BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037816
         (648 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/649 (70%), Positives = 536/649 (82%), Gaps = 2/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFCSSLVS-PFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           MK KW F KLNS  P+C+S VS P  T I+Q+P S TSK  + N VDIS LLS+  +EG+
Sbjct: 1   MKPKWFFQKLNSFLPYCTSPVSSPLKTLILQNPYSETSKFAI-NQVDISFLLSLCGREGY 59

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG SLHAS IK F   D  N  N+ N  V+WNSLLS Y +C ++R+A K+FD MPM+D
Sbjct: 60  LHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKD 119

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           T+SWN+ +SG L NG+ +MGF  FK+  E G YQ DQA+ T +L+ACD+ E   VSKMIH
Sbjct: 120 TISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIH 179

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            LV+L GYE E+TVGNALITSYF+CG  SSGR+VF EM  +NV+TWTAVISGL Q Q YE
Sbjct: 180 SLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYE 239

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E LKLF KM  G ++PNSLTYLSS+MACSGLQA+ EGRQIHG++WKL +  DLCIESALM
Sbjct: 240 ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALM 299

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMYSKCGS+EDAW+IFE AEE+D VSMTVILVG AQNGFEEE++Q+FVKMVK G+ IDPN
Sbjct: 300 DMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPN 359

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           M+SA+LGVFG+DTSL LGKQIHSLIIK  F SN FVNNGLINMYSKCGDL+DSIK+F  M
Sbjct: 360 MISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWM 419

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RNSVSWNSMIAAFARHGNG +AL+LYEEM+LEGV PTDVTFLSLLHAC+HVGLV KGM
Sbjct: 420 PQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGM 479

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            FL+SM + + I PR EHYACVVDM+GRAGLL EA+ FIER+P KP +LVWQALLGACSI
Sbjct: 480 GFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSI 539

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+SEMGKYAA +LFL  P+SPAPYIL+ANIYS  G+WKERA+ IK+MK+MGV KETGIS
Sbjct: 540 HGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGIS 599

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEIEKQ+HSFVV+D+MHP A+ I+GVL EL +LM+DEGYVP+KRFIL+
Sbjct: 600 WIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYVPDKRFILY 648


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/549 (75%), Positives = 473/549 (86%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K   + +A KLFD+MPMRDTVSWN M+SGFL++G FD+GFGFFK+   LGFY+LDQA+
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
            T ILSACDR EL  V+KM+HCL  L G++ E++VGNALITSYFKCG SSSG +VF EM 
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEML 121

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNVITWTA+ISGLVQ++LY + L+LFV+M  GL+ PNSLTYLSS+MACSGLQAL EG Q
Sbjct: 122 ERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQ 181

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IHG +WKL LQSD C+ESALMDMYSKCGS+ D  QIFE A +LD VSMT+IL GFAQNGF
Sbjct: 182 IHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGF 241

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           EEEAMQ FVKM++AG EID NMVSAVLGVFG DTSLGLG+QIHSL+IK  F SNPFV NG
Sbjct: 242 EEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNG 301

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LINMYSKCGDLEDS KVFSRM   NSVSWNSMIAAFARHG+G +AL+LY+EM+L+GVEPT
Sbjct: 302 LINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPT 361

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
           DVTFLSLLHACSHVGLV KGMEFLKSMTEVH+++PR EHYACVVDM+GRAGLL EA++FI
Sbjct: 362 DVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFI 421

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E +P+KPDVLVWQALLGAC IHGD EMGKYAAE L L+ P+ P+PYIL+ANIYS  GRWK
Sbjct: 422 EGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWK 481

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           ERAK IKRMKEM V KETGISWIEIE  +HSFVV+DKMHPQA+ I+GVLAEL   MIDEG
Sbjct: 482 ERAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEG 541

Query: 639 YVPNKRFIL 647
           YVP+KR+IL
Sbjct: 542 YVPDKRYIL 550



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 176/356 (49%), Gaps = 13/356 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC    + +++FD+M  R+ ++W  ++SG +++  +      F   +  G
Sbjct: 96  VGNALITSYFKCGFSSSGMQVFDEMLERNVITWTAIISGLVQSELYRDSLRLFVE-MTNG 154

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  ++   L AC   +       IH  V+  G + +  V +AL+  Y KCGS    
Sbjct: 155 LVEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDT 214

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            ++F      + ++ T +++G  QN   EE ++ FVKM       +S   +S+V+   G 
Sbjct: 215 LQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDS-NMVSAVLGVFGA 273

Query: 271 Q-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             +L  G+QIH ++ K +  S+  + + L++MYSKCG +ED+ ++F     ++ VS   +
Sbjct: 274 DTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSM 333

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLII 385
           +  FA++G    A+QL+ +M   G+E  P  V+  L +    + +GL ++    + S+  
Sbjct: 334 IAAFARHGDGSRALQLYKEMRLKGVE--PTDVT-FLSLLHACSHVGLVEKGMEFLKSMTE 390

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGN 439
               T        +++M  + G L ++ K F    P   + + W +++ A   HG+
Sbjct: 391 VHKLTPRMEHYACVVDMLGRAGLLNEA-KTFIEGLPIKPDVLVWQALLGACGIHGD 445



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 60/352 (17%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y KC  M + +++F+     D VS   +++GF +NG  +    FF + LE G
Sbjct: 197 VESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAG 256

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             ++D    + +L          + + IH LV    +     VGN LI  Y KCG     
Sbjct: 257 -TEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDS 315

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-- 268
            KVF  M   N ++W ++I+   ++      L+L+ +M L  + P  +T+LS + ACS  
Sbjct: 316 TKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHV 375

Query: 269 -----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
                G++ L    ++H +  +  ++   C+    +DM  + G + +A    E       
Sbjct: 376 GLVEKGMEFLKSMTEVHKLTPR--MEHYACV----VDMLGRAGLLNEAKTFIE------- 422

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGK-QI 380
                                        G+ I P+++   A+LG  G+     +GK   
Sbjct: 423 -----------------------------GLPIKPDVLVWQALLGACGIHGDPEMGKYAA 453

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-----APRNSVSW 427
             LI+ +    +P++   L N+YS  G  ++  K   RM     A    +SW
Sbjct: 454 EHLILSAPEKPSPYIL--LANIYSSKGRWKERAKTIKRMKEMCVAKETGISW 503



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 8/190 (4%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI-EIDPN 359
           MY+K G + DA ++F+     D VS  +++ GF ++G  +     F +M   G   +D  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            ++ +L          + K +H L + + F     V N LI  Y KCG     ++VF  M
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN ++W ++I+   +      +L L+ EM    VEP  +T+LS L ACS       G+
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACS-------GL 173

Query: 480 EFLKSMTEVH 489
           + L+   ++H
Sbjct: 174 QALREGCQIH 183



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 20/153 (13%)

Query: 24  FITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY 83
           F  K+++  T   S +V       S +L +   +    LG  +H+  IK           
Sbjct: 248 FFVKMLEAGTEIDSNMV-------SAVLGVFGADTSLGLGQQIHSLVIKR---------- 290

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +  +   + N L++ Y KC  + ++ K+F  MP  ++VSWN+M++ F R+G+       +
Sbjct: 291 SFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLY 350

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
           K  + L   +    +F  +L AC  S + LV K
Sbjct: 351 KE-MRLKGVEPTDVTFLSLLHAC--SHVGLVEK 380



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-V 460
           MY+K G L D+ K+F  M  R++VSWN MI+ F + G+       +++M+  G    D  
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 461 TFLSLLHACSH--VGLVNKGMEFLKSMTEVHR 490
           T  ++L AC    +G VNK +  L  +    R
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQR 92


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/534 (73%), Positives = 459/534 (85%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MPM+DT+SWN+ +SG L NG+ +MGF  FK+  E G YQ DQA+ T +L+ACD+ E   V
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           SKMIH LV+L GYE E+TVGNALITSYF+CG  SSGR+VF EM  +NV+TWTAVISGL Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
            Q YEE LKLF KM  G ++PNSLTYLSS+MACSGLQA+ EGRQIHG++WKL +  DLCI
Sbjct: 121 GQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCI 180

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
           ESALMDMYSKCGS+EDAW+IFE AEE+D VSMTVILVG AQNGFEEE++Q+FVKMVK G+
Sbjct: 181 ESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGV 240

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            IDPNM+SA+LGVFG+DTSL LGKQIHSLIIK  F SN FVNNGLINMYSKCGDL+DSIK
Sbjct: 241 VIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIK 300

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  RNSVSWNSMIAAFARHGNG +AL+LYEEM+LEGV PTDVTFLSLLHAC+HVGL
Sbjct: 301 IFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGL 360

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V KGM FL+SM + + I PR EHYACVVDM+GRAGLL EA+ FIER+P KP +LVWQALL
Sbjct: 361 VEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 420

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
           GACSIHG+SEMGKYAA +LFL  P+SPAPYIL+ANIYS  G+WKERA+ IK+MK+MGV K
Sbjct: 421 GACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTK 480

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ETGISWIEIEKQ+HSFVV+D+MHP A+ I+GVL EL +LM+DEGYVP+KRFIL+
Sbjct: 481 ETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYVPDKRFILY 534



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 194/373 (52%), Gaps = 29/373 (7%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           +Y       + N+L++ Y +C    +  ++FD+M  ++ V+W  ++SG L  G+      
Sbjct: 70  LYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISG-LSQGQ------ 122

Query: 142 FFKRSLELGFYQL-----DQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
           F++ SL+L F ++     D  S T +  L AC   +     + IH LV+  G   ++ + 
Sbjct: 123 FYEESLKL-FGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIE 181

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGL 252
           +AL+  Y KCGS     K+F      + ++ T ++ GL QN   EE +++FVKM  +  +
Sbjct: 182 SALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVV 241

Query: 253 INPNSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           I+PN    +S+++   G+  +L  G+QIH ++ K +  S+  + + L++MYSKCG ++D+
Sbjct: 242 IDPN---MISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDS 298

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            +IF +  + + VS   ++  FA++G    A+QL+ +M   G+   P  V+  L +    
Sbjct: 299 IKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVW--PTDVT-FLSLLHAC 355

Query: 372 TSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSV-S 426
             +GL ++    +  +  D+   P + +   +++M  + G L ++ K   R+  +  +  
Sbjct: 356 AHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILV 415

Query: 427 WNSMIAAFARHGN 439
           W +++ A + HGN
Sbjct: 416 WQALLGACSIHGN 428



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           IS +L +   +    LG  +H+  IK  + F +    N        N L++ Y KC  + 
Sbjct: 247 ISAILGVFGIDTSLALGKQIHSLIIK--KSFGSNYFVN--------NGLINMYSKCGDLD 296

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +++K+F  MP R++VSWN+M++ F R+G        ++     G +  D  +F  +L AC
Sbjct: 297 DSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTD-VTFLSLLHAC 355

Query: 167 DRSELSLVSK 176
             + + LV K
Sbjct: 356 --AHVGLVEK 363


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/619 (66%), Positives = 492/619 (79%), Gaps = 9/619 (1%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           ST+K +L N+ D++ LL++  ++ +  LG S+HA  IK    FD     +  NA  IWNS
Sbjct: 26  STTKSLL-NHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDG--SQRNALFIWNS 82

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY-- 152
           LLS Y KC + RNA  +FD MP+RDTVSWNTM+SGFLRNG+FD  F FFK+  E      
Sbjct: 83  LLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCC 142

Query: 153 QLDQASFTIILSACDRSELSL---VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           + D+A+ T +LS CD   L +   V++MIH LV++ G+E E+TVGNALITSYFKC   S 
Sbjct: 143 RFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQ 202

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACS 268
           GRKVF EM  RNV+TWTAVISGL QN+ YE+ L+LF +M   G ++PN LTYLSS+MACS
Sbjct: 203 GRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACS 262

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GLQ L +G++IHG+LWKL +QSDLCIESALMD+YSKCGS++ AWQIFE AEELDGVS+TV
Sbjct: 263 GLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTV 322

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ILV FAQNGFEEEA+Q+F KMV  G+E+D NMVSAVLGVFGV T L LGKQIHSLIIK +
Sbjct: 323 ILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKN 382

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  NPFV NGL+NMYSKCGDL DS+ VF +M  +NSVSWNS+IAAFARHG+GFKAL+ YE
Sbjct: 383 FCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYE 442

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM++EGV PTDVTFLSLLHACSH GLV KGME L+SMT  H ISPR+EHYACVVDM+GRA
Sbjct: 443 EMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRA 502

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+ FIE +P    VLVWQALLGACSIHGDSEMGKYAA++LF A P SPAPY+LMA
Sbjct: 503 GHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAPYVLMA 562

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS  G WKERA +IKRMKEMGV KE GISWIEIEK+V+SFVV DK+HP+AD I  VL+
Sbjct: 563 NIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFVVGDKLHPEADVIFWVLS 622

Query: 629 ELLRLMIDEGYVPNKRFIL 647
            LL+ + DEGYVP+K+FIL
Sbjct: 623 GLLKHLKDEGYVPDKKFIL 641


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/649 (63%), Positives = 497/649 (76%), Gaps = 5/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F HLGP LHAS IK  E F+  +     NA V+WNSLLS Y KC ++ +A+KLFD+MPMR
Sbjct: 60  FPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           S IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct: 598 SSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/649 (63%), Positives = 497/649 (76%), Gaps = 5/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F HLGP LHAS IK  E F+  +     NA V+WNSLLS Y KC ++ +A+KLFD+MPMR
Sbjct: 60  FPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           S IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct: 598 SSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/638 (63%), Positives = 496/638 (77%), Gaps = 5/638 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P+   S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCFSTVLSPSKILIRQSPSYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F +LGP LHAS +K  E FD  +     NA V+WNSLLS Y+KC ++ +A+KLFD+MP+R
Sbjct: 60  FPYLGPCLHASIVKNPEFFDPVDADIHRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  DQA+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DQATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF EM  RNVITWTAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW+IFE ++E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSA+LGV  VD SLGLGKQ+HSL+IK  F  N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGL+ EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS A +ILMANIYS  G+WKERAK IKRMKEMGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFETAPDSSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           SWIE+EK+ HSFVV+DKMHPQA+ I+ VL+ L  + +D
Sbjct: 598 SWIEMEKKTHSFVVEDKMHPQAEAIYDVLSGLFPVTVD 635


>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 736

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/454 (74%), Positives = 393/454 (86%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N +++ + + G   +GR+VF EM  RNVITWTA+ISGL QN++YE+ L LFV+M  GLI 
Sbjct: 27  NTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIE 86

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN LTYLSS+ ACSGLQAL +GRQIHG++WKL +QS+LCIESALMD+YSKCGS+EDA ++
Sbjct: 87  PNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRV 146

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE A ELD VSMTVILVGF QNGFEEEA++ FVKMV  G E+DPNMVSAVLG  GVDTSL
Sbjct: 147 FESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSL 206

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
           GLGKQIHSL+IK    SNPFV NGLINMYSKCG+L++SIKVF+ +  RNSVSWNSMIAAF
Sbjct: 207 GLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAF 266

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           ARHG+GF+AL LYEEM  EG  PTD+TFLSLLHACSHVGLV+KGM+FLKSMT+V+ ISPR
Sbjct: 267 ARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPR 326

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           AEHYACVVDM+GRAGLL EA+S IER+ +KPDVL+WQALLGACSI GD+E+GKYAAE+L 
Sbjct: 327 AEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLL 386

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           L +P  PAPY+L+ANIYS  GRW ERA+ IKRMKEMGV KETGISWIEIEK+VHSFVV+D
Sbjct: 387 LLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIEKKVHSFVVED 446

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K HPQA+ I+GVLAEL RLMIDEGYVP+KRFIL+
Sbjct: 447 KKHPQAEIIYGVLAELFRLMIDEGYVPDKRFILY 480



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 152/288 (52%), Gaps = 36/288 (12%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE---------- 148
           Y KC    +AVK+FDDMP RDTVSWNTMVSGFLRNG+ D G   F   LE          
Sbjct: 2   YFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAII 61

Query: 149 --------------------LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE 188
                                G  + +  ++   L+AC   +     + IH LV+  G +
Sbjct: 62  SGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQ 121

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
             + + +AL+  Y KCGS    R+VF      + ++ T ++ G  QN   EE ++ FVKM
Sbjct: 122 SNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKM 181

Query: 249 -HLGL-INPNSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            ++G  ++PN    +S+V+   G+  +L  G+QIH ++ K +L S+  + + L++MYSKC
Sbjct: 182 VNIGTEVDPN---MVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKC 238

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           G ++++ ++F      + VS   ++  FA++G    A++L+ +M++ G
Sbjct: 239 GELQESIKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEG 286



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 14/233 (6%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L+  Y KC  + +A ++F+     D VS   ++ GF +NG  +    FF + + +G
Sbjct: 126 IESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIG 185

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             ++D    + +L AC       + K IH LV          VGN LI  Y KCG     
Sbjct: 186 -TEVDPNMVSAVLGACGVDTSLGLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQES 244

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-- 268
            KVF  +  RN ++W ++I+   ++      L+L+ +M      P  LT+LS + ACS  
Sbjct: 245 IKVFNGLTCRNSVSWNSMIAAFARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHV 304

Query: 269 -----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
                G++ L    +++GI  +   +   C+    +DM  + G + +A  + E
Sbjct: 305 GLVDKGMKFLKSMTKVYGISPR--AEHYACV----VDMLGRAGLLNEAKSLIE 351



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 46/311 (14%)

Query: 301 MYSKCGSVEDA--------------W-----------------QIFEFAEELDGVSMTVI 329
           MY KCG   DA              W                 Q+F+   E + ++ T I
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM---VSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + G +QN   E+++ LFV+M + G+ I+PN    +S++    G+  +L  G+QIH L+ K
Sbjct: 61  ISGLSQNEMYEDSLGLFVQM-RCGL-IEPNFLTYLSSLTACSGLQ-ALEKGRQIHGLVWK 117

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               SN  + + L+++YSKCG LED+ +VF      + VS   ++  F ++G   +A+E 
Sbjct: 118 LGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEF 177

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M   G E       ++L AC     +  G + + S+     +         +++M  
Sbjct: 178 FVKMVNIGTEVDPNMVSAVLGACGVDTSLGLGKQ-IHSLVIKRSLGSNPFVGNGLINMYS 236

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDSPAP 563
           + G L E+      +  +  V  W +++ A + HGD     + A +L+   + +   P  
Sbjct: 237 KCGELQESIKVFNGLTCRNSV-SWNSMIAAFARHGDG----FRALRLYEEMIQEGAVPTD 291

Query: 564 YILMANIYSCS 574
              ++ +++CS
Sbjct: 292 LTFLSLLHACS 302



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 122/312 (39%), Gaps = 93/312 (29%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN---------------------- 439
           MY KCG   D++KVF  M  R++VSWN+M++ F R+G+                      
Sbjct: 1   MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAI 60

Query: 440 --GFKALELYE-------EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF--------- 481
             G    E+YE       +M+   +EP  +T+LS L ACS +  + KG +          
Sbjct: 61  ISGLSQNEMYEDSLGLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGI 120

Query: 482 ----------------LKSMTEVHRISPRA---EHYACVVDMVG--RAGLLIEARSFIER 520
                             S+ +  R+   A   +  +  V +VG  + G   EA  F  +
Sbjct: 121 QSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVGFTQNGFEEEAIEFFVK 180

Query: 521 M-----PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI--LMANIYSC 573
           M      V P+++   A+LGAC +     +GK     L + +     P++   + N+YS 
Sbjct: 181 MVNIGTEVDPNMV--SAVLGACGVDTSLGLGK-QIHSLVIKRSLGSNPFVGNGLINMYSK 237

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
            G  +E  K        G+     +SW       +S +        A   HG     LRL
Sbjct: 238 CGELQESIKVFN-----GLTCRNSVSW-------NSMIA-------AFARHGDGFRALRL 278

Query: 634 ---MIDEGYVPN 642
              MI EG VP 
Sbjct: 279 YEEMIQEGAVPT 290


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/454 (71%), Positives = 391/454 (86%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           NA+I+ + +     +GR+VF EM  RNV+TWTAVISGL QN+ YE+GL+LF +M  G ++
Sbjct: 27  NAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVS 86

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PNSLTYLS++MACSGLQAL EGR+IHG+LWKL +QSDLCIESALMD+YSKCGS+E+AW+I
Sbjct: 87  PNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEI 146

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE AEELD VS+TVILV F QNG EEEA+Q+F++MVK GIE+DPNMVSA+LGVFGV TSL
Sbjct: 147 FESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSL 206

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LGKQIHSLIIK +F  N FV+NGLINMYSKCGDL DS++VF  M  +NSVSWNS+IAA+
Sbjct: 207 TLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAY 266

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           AR+G+GF+AL+ Y++M++EG+  TDVTFLSLLHACSH GLV KGMEFL+SMT  H +SPR
Sbjct: 267 ARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPR 326

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           +EHYACVVDM+GRAGLL EA+ FIE +P  P VLVWQALLGACSIHGDSEMGKYAA +LF
Sbjct: 327 SEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLF 386

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           LA PDSPAPY+LMANIYS  G+WKERA++IK+MKEMGV KE GISW+EIEK+V+SFVV D
Sbjct: 387 LATPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIEKKVNSFVVGD 446

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           KMHPQAD I  +L+ LL+ + DEGYVP+KR IL+
Sbjct: 447 KMHPQADAIFWLLSRLLKHLKDEGYVPDKRCILY 480



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 187/380 (49%), Gaps = 46/380 (12%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-------- 150
           Y KC ++++A+KLFD MP++DTVSWN ++SGFLRN + D G   F   LE          
Sbjct: 2   YSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVI 61

Query: 151 -------FYQ-----LDQA----------SFTIILSACDRSELSLVSKMIHCLVYLCGYE 188
                  FY+      DQ           ++   L AC   +  L  + IH L++  G +
Sbjct: 62  SGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQ 121

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
            ++ + +AL+  Y KCGS     ++F      + ++ T ++   +QN L EE +++F++M
Sbjct: 122 SDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRM 181

Query: 249 -HLGL-INPNSLTYLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
             LG+ ++PN    +S+++   G+  +L  G+QIH ++ K     +L + + L++MYSKC
Sbjct: 182 VKLGIEVDPN---MVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKC 238

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G + D+ Q+F    + + VS   ++  +A+ G    A+Q +  M   GI +        L
Sbjct: 239 GDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTD---VTFL 295

Query: 366 GVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            +    +  GL ++    + S+      +        +++M  + G L+++ K F    P
Sbjct: 296 SLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVDMLGRAGLLKEA-KKFIEGLP 354

Query: 422 RNS--VSWNSMIAAFARHGN 439
            N   + W +++ A + HG+
Sbjct: 355 ENPGVLVWQALLGACSIHGD 374



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 14/249 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L+  Y KC  +  A ++F+     D VS   ++  F++NG  +     F R ++LG
Sbjct: 126 IESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLG 185

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             ++D    + IL          + K IH L+    + + + V N LI  Y KCG     
Sbjct: 186 I-EVDPNMVSAILGVFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDS 244

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-- 268
            +VF EM  +N ++W +VI+   +       L+ +  M +  I    +T+LS + ACS  
Sbjct: 245 LQVFHEMTQKNSVSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHA 304

Query: 269 -----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
                G++ L    + HG    L+ +S+    + ++DM  + G +++A +  E   E  G
Sbjct: 305 GLVEKGMEFLESMTRDHG----LSPRSEH--YACVVDMLGRAGLLKEAKKFIEGLPENPG 358

Query: 324 VSMTVILVG 332
           V +   L+G
Sbjct: 359 VLVWQALLG 367



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 107/228 (46%), Gaps = 28/228 (12%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG L+D+IK+F  M  +++VSWN++I+ F R+ +     ++++EM    +E   VT
Sbjct: 1   MYSKCGKLQDAIKLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEM----LERNVVT 56

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS---FI 518
           + +++   +       G+     M     +SP +  Y   +        L+E R     +
Sbjct: 57  WTAVISGLAQNEFYEDGLRLFDQMRR-GSVSPNSLTYLSALMACSGLQALLEGRKIHGLL 115

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCSG 575
            ++ ++ D+ +  AL+   S  G  E       +AE+L     D     IL+A  +  +G
Sbjct: 116 WKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEEL----DDVSLTVILVA--FMQNG 169

Query: 576 RWKERAKAIKRMKEMGVDKETGI-----------SWIEIEKQVHSFVV 612
             +E  +   RM ++G++ +  +           + + + KQ+HS ++
Sbjct: 170 LEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGKQIHSLII 217


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/462 (68%), Positives = 378/462 (81%), Gaps = 8/462 (1%)

Query: 195 NALI-------TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           NALI        SYFKCG    G +VF EM  RNVITWTAVISGL QN  +E  LKLF +
Sbjct: 119 NALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKE 178

Query: 248 M-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M   G + PNSLTYLS + ACSGL+AL EG QIHG++ KL +QSDLCI SALMDMYSK G
Sbjct: 179 MMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSG 238

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            + +AW+IFE AEELD VS+TVIL GF  NG EEEA+Q+F+KM+K GIEID N+VS VLG
Sbjct: 239 RIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLG 298

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           VFG DTSL LG+Q+HS ++K +F  NPFV+NGLINMYSKCG L++S+KVF RM  RNSV+
Sbjct: 299 VFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVT 358

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WNSMIAAFARHG+  KAL+LYE+M+LEG +PTDVTFLSLLHACSH GLV KGMEFLKSMT
Sbjct: 359 WNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMT 418

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + H ++PR+EH+ACVVDM+GRAG+L EAR+FIE++P +P +LVWQALLGACS++GDS++G
Sbjct: 419 KDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIG 478

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           KYAAE LF   PDSP PY+L+ANIYS  G WKERA+ I++MKE+G  KETGISWIEI+K+
Sbjct: 479 KYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKK 538

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           VHSF V DKMHPQ + I+GVL EL  LM+DEGYVP+K+FIL+
Sbjct: 539 VHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKFILY 580



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 242/485 (49%), Gaps = 57/485 (11%)

Query: 1   MKSKWVFLKLNSNFP-FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           MK KWVF K +S+ P + +SL+SPF  +  Q+P   TS   + N++D S LLSI  +EG+
Sbjct: 1   MKLKWVFQKRSSHLPSWVTSLISPFRNQFHQNPFPETSSTFVLNHLDPSFLLSICGREGN 60

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG SLHAS IK+FE      + N  N  VI NSL+S Y +C ++ +AVK+FD+M  RD
Sbjct: 61  LHLGSSLHASIIKSFE------LSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRD 114

Query: 120 TVSWNTMV--------------------------------------SGFLRNGEFDMGFG 141
           T+SWN ++                                      SG  +NG  +    
Sbjct: 115 TISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLK 174

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            FK  +  G  + +  ++  +L+AC   E       IH L+   G + ++ +G+AL+  Y
Sbjct: 175 LFKEMMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMY 234

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGL-INPNSLT 259
            K G      K+F      ++++ T +++G   N   EE +++F+KM  +G+ I+ N ++
Sbjct: 235 SKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVS 294

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
            +  V       +L  G+Q+H  + K     +  + + L++MYSKCG+++++ ++F+   
Sbjct: 295 VVLGVFGAD--TSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMR 352

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + V+   ++  FA++G   +A+QL+  M   G +  P  V+  L +    +  GL K+
Sbjct: 353 ERNSVTWNSMIAAFARHGDALKALQLYEDMQLEGAK--PTDVT-FLSLLHACSHAGLVKK 409

Query: 380 IHSLI--IKSDFTSNPFVNNG--LINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAF 434
               +  +  D   NP   +   +++M  + G L ++     ++  +   + W +++ A 
Sbjct: 410 GMEFLKSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGAC 469

Query: 435 ARHGN 439
           + +G+
Sbjct: 470 SLYGD 474


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/457 (67%), Positives = 376/457 (82%), Gaps = 3/457 (0%)

Query: 195 NALITSYFKCGS--SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLG 251
           NALI  + + G   +  G +VF EM  RNVITWTAVISGL QN  +E  LKLF +M   G
Sbjct: 119 NALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYG 178

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + PNSLTYLS + ACSGL+AL EG QIHG++ KL +QSDLCI SALMDMYSK G + +A
Sbjct: 179 SVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEA 238

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           W+IFE AEELD VS+TVIL GF  NG EEEA+Q+F+KM+K GIEID N+VS VLGVFG D
Sbjct: 239 WKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGAD 298

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           TSL LG+Q+HS ++K +F  NPFV+NGLINMYSKCG L++S+KVF RM  RNSV+WNSMI
Sbjct: 299 TSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMI 358

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           AAFARHG+  KAL+LYE+M+LEG +PTDVTFLSLLHACSH GLV KGMEFLKSMT+ H +
Sbjct: 359 AAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGM 418

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           +PR+EH+ACVVDM+GRAG+L EAR+FIE++P +P +LVWQALLGACS++GDS++GKYAAE
Sbjct: 419 NPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAE 478

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
            LF   PDSP PY+L+ANIYS  G WKERA+ I++MKE+G  KETGISWIEI+K+VHSF 
Sbjct: 479 HLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKKVHSFT 538

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           V DKMHPQ + I+GVL EL  LM+DEGYVP+K+FIL+
Sbjct: 539 VGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKFILY 575



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 242/480 (50%), Gaps = 52/480 (10%)

Query: 1   MKSKWVFLKLNSNFP-FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           MK KWVF K +S+ P + +SL+SPF  +  Q+P   TS   + N++D S LLSI  +EG+
Sbjct: 1   MKLKWVFQKRSSHLPSWVTSLISPFRNQFHQNPFPETSSTFVLNHLDPSFLLSICGREGN 60

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG SLHAS IK+FE      + N  N  VI NSL+S Y +C ++ +AVK+FD+M  RD
Sbjct: 61  LHLGSSLHASIIKSFE------LSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRD 114

Query: 120 TVSWNTMV---------------------------------SGFLRNGEFDMGFGFFKRS 146
           T+SWN ++                                 SG  +NG  +     FK  
Sbjct: 115 TISWNALIGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEM 174

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G  + +  ++  +L+AC   E       IH L+   G + ++ +G+AL+  Y K G 
Sbjct: 175 MSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGR 234

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGL-INPNSLTYLSSV 264
                K+F      ++++ T +++G   N   EE +++F+KM  +G+ I+ N ++ +  V
Sbjct: 235 IGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGV 294

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
                  +L  G+Q+H  + K     +  + + L++MYSKCG+++++ ++F+   E + V
Sbjct: 295 FGAD--TSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSV 352

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +   ++  FA++G   +A+QL+  M   G +  P  V+  L +    +  GL K+    +
Sbjct: 353 TWNSMIAAFARHGDALKALQLYEDMQLEGAK--PTDVT-FLSLLHACSHAGLVKKGMEFL 409

Query: 385 --IKSDFTSNPFVNNG--LINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGN 439
             +  D   NP   +   +++M  + G L ++     ++  +   + W +++ A + +G+
Sbjct: 410 KSMTKDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGD 469


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 302/585 (51%), Positives = 403/585 (68%), Gaps = 11/585 (1%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP---NATVIWNSLLS 97
           L NY   S LL+   +EG   LG +LHA+ +K   P   +   + P   +  V WNSL+S
Sbjct: 8   LLNYARFSGLLASCGREGDLRLGAALHAAVVKN--PAHFRLCASRPWLRHVLVAWNSLVS 65

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y +C +  +A ++FD+M +RD VSWN++++     G+       F+R L       D+A
Sbjct: 66  MYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRA 122

Query: 158 SFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           +FT +LS C R+  + +    M+H LV  CG+E EV VGNAL+T+YF+CGS +S  +VF 
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  +NVITWTA+ISG+ + +LY+E   LF +M +  ++ N+ TY  +++AC+   A  E
Sbjct: 183 GMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCALLACARSLAARE 241

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+Q+HG++ K   + DL +ES LMD+YSKCG +EDA  +F    E D V +TVILVGFAQ
Sbjct: 242 GQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQ 301

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG EE+A +LF +MV AG EID N VSAVLG FG      LGKQIH+L+IK  F  N +V
Sbjct: 302 NGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYV 361

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            NGL+NMYSKCG+L +S++VF  M  +NSVSWNS+IAAFARHG+G +  +L+E MK +G 
Sbjct: 362 CNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGA 421

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +PTDVTFLSLLHACSHVG   KG+E L SM+  + + PR EHYACVVDM+GRAGLL +A+
Sbjct: 422 KPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAK 481

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           SFIE  P   + L+WQAL+GACS HG+SE+GKYAAEKL L  P   A Y+L++NIYS  G
Sbjct: 482 SFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEG 541

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
           RW +RAK +KRM EMG+ K+TG SWIE+EK+VHSFVV    HP +
Sbjct: 542 RWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNS 586


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/585 (51%), Positives = 402/585 (68%), Gaps = 11/585 (1%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP---NATVIWNSLLS 97
           L NY   S LL+   +EG   LG +LHA+ +K   P   +   + P   +  V WN+L+S
Sbjct: 8   LLNYARFSGLLASCGREGDLRLGAALHAAVVKN--PAHFRLCASRPWLRHVLVAWNALVS 65

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y +C +  +A ++FD+M +RD VSWN++++     G+       F+R L       D+A
Sbjct: 66  MYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGD---ALALFRRMLRSDARACDRA 122

Query: 158 SFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           +FT +LS C R+  + +    M+H LV  CG+E EV VGNAL+T+YF+CGS +S  +VF 
Sbjct: 123 TFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFH 182

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  +NVITWTA+ISG+ + +LY+E   LF +M +  ++ N+ TY  +++AC+   A  E
Sbjct: 183 GMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDANNATYSCTLLACARSLAARE 241

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+Q+HG++ K   ++DL +ES LMD+YSKCG +EDA  +F    E D V +TVILVGFAQ
Sbjct: 242 GQQVHGLVVKAGFEADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQ 301

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG EE+A +LF +MV AG EID N VS VLG FG      LGKQIH+L+IK  F  N +V
Sbjct: 302 NGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALGKQIHALVIKRCFGVNTYV 361

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            NGL+NMYSKCG+L +S++VF  M  +NSVSWNS+IAAFARHG+G +  +L+E MK +G 
Sbjct: 362 CNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGA 421

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +PTDVTFLSLLHACSHVG   KG+E L SM+  + + PR EHYACVVDM+GRAGLL +A+
Sbjct: 422 KPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAK 481

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           SFIE  P     L+WQAL+GACS HG+SE+GK+AAEKL L  P   A Y+L++NIYS  G
Sbjct: 482 SFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYSSEG 541

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
           RW +RAK +KRM EMG+ K+TG SWIE+EK+VHSFVV    HP +
Sbjct: 542 RWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNS 586


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/604 (50%), Positives = 406/604 (67%), Gaps = 12/604 (1%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY-NVPNATVIWNSLLSF 98
            L +Y  +S LLS   +     LG +LH + +K    F    +  ++ +  V WN+L+S 
Sbjct: 5   ALLDYAYLSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSM 64

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL---- 154
           Y +C +   A ++FD+M +RD+VSWN+++     +G  D     F+R L           
Sbjct: 65  YARCGRHAEAARVFDEMRIRDSVSWNSLIGS---SGAED-ALSQFRRMLRSSSSPGGGVS 120

Query: 155 -DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D A+FT +LSAC R        M+H LV   G+E EV+VGNAL+T+YF+C S  S  + 
Sbjct: 121 CDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERA 180

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  RNVITWTA+ISG+ + +LY++ + LF +M    ++ NS TY SS++AC+G  AL
Sbjct: 181 FHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRR-TVDANSATYSSSLLACAGSLAL 239

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            EG+QIHG++ K  L++DL +ES LMD+YSKCG +ED   +F    + D +S+TVILVGF
Sbjct: 240 KEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGF 299

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQNG EE+A +LF +M   GI ID NMVSAVLG FG      LGKQIH+L+IK  F  N 
Sbjct: 300 AQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNI 359

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           +V NGLINMYSKCG+LE+SI+VF+    +NS+SWNS+IAAFARHG G +  +L+E MK +
Sbjct: 360 YVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKAD 419

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  PTDVTFLSLLH CSHVG   KG+E L SM+  + I PR EHYACVVDM+GRAGLL +
Sbjct: 420 GANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLED 479

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           ARSFIE  P K   L+WQAL+GACS  G+SE+GKYAAEKL    PDSPA Y+L++NIYS 
Sbjct: 480 ARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSS 539

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM-HPQADTIHGVLAELLR 632
            GRW +RA+ +K M+EMG+ K+TG SWIE+EK+VHSFVV      P + T+  ++ +L  
Sbjct: 540 EGRWDDRARVMKSMREMGLRKDTGKSWIELEKEVHSFVVGSPASRPDSATMDDMMLQLSA 599

Query: 633 LMID 636
           ++ D
Sbjct: 600 VVGD 603


>gi|242089513|ref|XP_002440589.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
 gi|241945874|gb|EES19019.1| hypothetical protein SORBIDRAFT_09g003570 [Sorghum bicolor]
          Length = 613

 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/587 (49%), Positives = 396/587 (67%), Gaps = 15/587 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKT-----FEPFDNQNVYNVPNATVIWNSLLS 97
           NY  +S LL+   + G   LG +LHA   K        P  + ++++V     +WNSL++
Sbjct: 10  NYAHLSGLLARCGRAGDLRLGTALHAVVAKNPAHFRLCPHRSASLHHV---LAVWNSLVA 66

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y +C +  +A + FD+MP+RD+VSWN++++      +         R+   G    D A
Sbjct: 67  MYARCGRRGDAARAFDEMPLRDSVSWNSLLAASASAADALALLRRMLRAAP-GAAACDHA 125

Query: 158 SFTIILSACDRSELSLVSK-----MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + T +LSAC R++    +      ++H L   CG + EV+VGNALIT+YF+C S  S  +
Sbjct: 126 TLTTVLSACARADGGGGTGAASLPVVHGLAVSCGLDAEVSVGNALITAYFECSSPGSAER 185

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RNV+TWTA++SG+ + + Y E L LF +M    ++ N  +Y SS++AC+G  A
Sbjct: 186 VFDAMADRNVVTWTAMVSGMARAERYRESLSLFRQMRHA-VDANRASYSSSLLACAGSLA 244

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             EG+QIHG++ K   ++DL +ES LMDMYSKCG +EDA ++F   ++ D V +TVILVG
Sbjct: 245 ASEGQQIHGLVVKAGFETDLHVESELMDMYSKCGLMEDALRVFRSCQDPDEVFLTVILVG 304

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           FAQNG EE+A +LF +MV  GI+ID NMVSAVLG FG      LGKQIH+L+IK  F  N
Sbjct: 305 FAQNGLEEKAFELFAEMVGKGIDIDANMVSAVLGAFGASAPFALGKQIHALVIKKCFGGN 364

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V NGLINMYSKCG+L++SI+VF     +N+V+WNS+IAAFARHG+G +   L+E MK 
Sbjct: 365 TYVCNGLINMYSKCGELQESIEVFDGTPSKNTVTWNSIIAAFARHGHGSEVFGLFESMKA 424

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV+PT+VTFLSLLH CSHVG  +KG+E L SM+  + I P+ EHYACVVDM+GRA  L 
Sbjct: 425 DGVKPTNVTFLSLLHGCSHVGSASKGLEILNSMSSQYGIHPKVEHYACVVDMLGRASQLD 484

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           +A++FIE  P K   L+WQAL+GACS H DSE+GKYAAEKL L  PD  A Y+L++NIYS
Sbjct: 485 DAKAFIEDGPFKDSALLWQALMGACSFHKDSEVGKYAAEKLLLLDPDCTAAYVLLSNIYS 544

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
             GRW +RA+ +KRM+E G+ K+TG SWIE+EK+V SFV+  +  P 
Sbjct: 545 SEGRWDDRARILKRMREKGLRKDTGKSWIELEKEVRSFVMAPRSRPD 591


>gi|413917687|gb|AFW57619.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 611

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/576 (49%), Positives = 383/576 (66%), Gaps = 10/576 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFD-NQNVYNVPNATVIWNSLLSFYLK 101
           +Y  +S LL+   + G   LG SLHA   K    F        + +  V+WNSL++ Y +
Sbjct: 10  SYAHLSGLLARCGRAGDLRLGTSLHAIVAKNPSHFRLCPRRSCLQHVVVVWNSLVAMYGR 69

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL--GFYQLDQASF 159
           C    +AV++FD+M +RD+VSWN+++S    +          +R L    G    D A+ 
Sbjct: 70  CGCRGDAVRVFDEMALRDSVSWNSLLSA---SASATDALALLRRMLSAAPGAAACDHATL 126

Query: 160 TIILSACDRSELSLVSK---MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           T +LSAC R+     S     +H L   CG + EV+VGNALIT+YF+C S  S  +VF  
Sbjct: 127 TTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAERVFDG 186

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  RNVITWTA++SG+ + + Y E L LF +M    ++ N  +Y SS++AC+G +A  EG
Sbjct: 187 MADRNVITWTAMVSGMARAERYSESLSLFRQMRRA-VDANRASYSSSLLACAGSRAAREG 245

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +QIHG+  K  L++DL +ES LMDMYSKCG +EDA ++F   ++ D VS+TVIL GFAQN
Sbjct: 246 QQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAGFAQN 305

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G EEEA +LF +MV  GI +D NMVSAVLG FG      LGKQIH+L IK  F  N +V 
Sbjct: 306 GLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGNTYVC 365

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           NGLINMYSKCG+L++SI+VF     +N+V+WNS+IAA+ARHG+G++   L+E M+ +GV+
Sbjct: 366 NGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEADGVK 425

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           PTDVTFLSLLH CSHVG   KG+E L SM   + I P+ EHYACVVDM+GRA  L +A++
Sbjct: 426 PTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYACVVDMLGRASQLDDAKA 485

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FIE  P K   L+WQ+L+GACS H +S +G+ AAEKL L  PD  A Y+L++N+YS  GR
Sbjct: 486 FIEDGPFKDSALLWQSLMGACSFHKNSGVGECAAEKLLLLDPDCTAAYVLLSNVYSSEGR 545

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           W +RA+ +KRM+  G+ K+TG SWIE+EK+V SF  
Sbjct: 546 WDDRARIMKRMRARGLRKDTGKSWIELEKEVRSFAA 581


>gi|293331543|ref|NP_001169748.1| uncharacterized protein LOC100383629 [Zea mays]
 gi|224031397|gb|ACN34774.1| unknown [Zea mays]
          Length = 546

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/520 (50%), Positives = 356/520 (68%), Gaps = 9/520 (1%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL--GFYQLD 155
            Y +C    +AV++FD+M +RD+VSWN+++S    +          +R L    G    D
Sbjct: 1   MYGRCGCRGDAVRVFDEMALRDSVSWNSLLSA---SASATDALALLRRMLSAAPGAAACD 57

Query: 156 QASFTIILSACDRSELSLVSK---MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            A+ T +LSAC R+     S     +H L   CG + EV+VGNALIT+YF+C S  S  +
Sbjct: 58  HATLTTVLSACARAGGGTGSASLPAVHGLAASCGLDAEVSVGNALITAYFECSSPGSAER 117

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RNVITWTA++SG+ + + Y E L LF +M    ++ N  +Y SS++AC+G +A
Sbjct: 118 VFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRRA-VDANRASYSSSLLACAGSRA 176

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             EG+QIHG+  K  L++DL +ES LMDMYSKCG +EDA ++F   ++ D VS+TVIL G
Sbjct: 177 AREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDALRVFRSGQDPDEVSLTVILAG 236

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           FAQNG EEEA +LF +MV  GI +D NMVSAVLG FG      LGKQIH+L IK  F  N
Sbjct: 237 FAQNGLEEEAFRLFAEMVGKGIRVDANMVSAVLGAFGASAPFALGKQIHALAIKRCFGGN 296

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V NGLINMYSKCG+L++SI+VF     +N+V+WNS+IAA+ARHG+G++   L+E M+ 
Sbjct: 297 TYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFESMEA 356

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV+PTDVTFLSLLH CSHVG   KG+E L SM   + I P+ EHYACVVDM+GRA  L 
Sbjct: 357 DGVKPTDVTFLSLLHGCSHVGSPRKGLEILDSMPSKYGIHPKVEHYACVVDMLGRASQLD 416

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           +A++FIE  P K   L+WQ+L+GACS H +S +G+ AAEKL L  PD  A Y+L++N+YS
Sbjct: 417 DAKAFIEDGPFKDSALLWQSLMGACSFHKNSGVGECAAEKLLLLDPDCTAAYVLLSNVYS 476

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
             GRW +RA+ +KRM+  G+ K+TG SWIE+EK+V SF  
Sbjct: 477 SEGRWDDRARIMKRMRARGLRKDTGKSWIELEKEVRSFAA 516



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 173/355 (48%), Gaps = 12/355 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y +C    +A ++FD M  R+ ++W  MVSG  R   +      F++     
Sbjct: 98  VGNALITAYFECSSPGSAERVFDGMADRNVITWTAMVSGMARAERYSESLSLFRQMRRA- 156

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               ++AS++  L AC  S  +   + IH L    G E ++ V + L+  Y KCG     
Sbjct: 157 -VDANRASYSSSLLACAGSRAAREGQQIHGLAVKAGLETDLHVESELMDMYSKCGLMEDA 215

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF   +  + ++ T +++G  QN L EE  +LF +M    I  ++   +S+V+   G 
Sbjct: 216 LRVFRSGQDPDEVSLTVILAGFAQNGLEEEAFRLFAEMVGKGIRVDA-NMVSAVLGAFGA 274

Query: 271 QA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            A    G+QIH +  K     +  + + L++MYSKCG ++++ ++F+     + V+   I
Sbjct: 275 SAPFALGKQIHALAIKRCFGGNTYVCNGLINMYSKCGELQESIRVFDGTPSKNTVTWNSI 334

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +  +A++G   E   LF  M   G++  D   +S + G   V +     + + S+   S 
Sbjct: 335 IAAYARHGHGWEVFGLFESMEADGVKPTDVTFLSLLHGCSHVGSPRKGLEILDSM--PSK 392

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGN 439
           +  +P V +   +++M  +   L+D+ K F    P   +++ W S++ A + H N
Sbjct: 393 YGIHPKVEHYACVVDMLGRASQLDDA-KAFIEDGPFKDSALLWQSLMGACSFHKN 446



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L        F LG  +HA  IK                T + N L++ Y KC +++
Sbjct: 265 VSAVLGAFGASAPFALGKQIHALAIKRC----------FGGNTYVCNGLINMYSKCGELQ 314

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            ++++FD  P ++TV+WN++++ + R+G     FG F+ S+E    +    +F  +L  C
Sbjct: 315 ESIRVFDGTPSKNTVTWNSIIAAYARHGHGWEVFGLFE-SMEADGVKPTDVTFLSLLHGC 373


>gi|297833248|ref|XP_002884506.1| hypothetical protein ARALYDRAFT_896610 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330346|gb|EFH60765.1| hypothetical protein ARALYDRAFT_896610 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 801

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/357 (59%), Positives = 256/357 (71%), Gaps = 45/357 (12%)

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +LCIESALMDMYSKCGS+EDAW+IFE  EE+D VSMT+ILVG AQNG EEEA+Q F++M+
Sbjct: 312 ELCIESALMDMYSKCGSIEDAWKIFESTEEVDEVSMTLILVGLAQNGSEEEAIQFFIRML 371

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           +AG+EID N+VSAVLGV  VD   G                                   
Sbjct: 372 QAGVEIDANVVSAVLGVSFVDKLFG----------------------------------- 396

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
                      RN VSWNSMIAAFA HG+G  AL+LYEEM ++ V+PTDVTFLSLLHACS
Sbjct: 397 ----------SRNYVSWNSMIAAFACHGHGLAALKLYEEMIMQDVKPTDVTFLSLLHACS 446

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GL++KG E L  M +V+ I PR EHY C++DM+GRAGL+ EA+SFI+ +PVKPD  +W
Sbjct: 447 HAGLIDKGRELLNDMKDVYGIKPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPVKPDCKMW 506

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           QALLGACS HGD+E+GKYAAE+L    PDS A +ILMANIYS   +WKERAK IKRMK M
Sbjct: 507 QALLGACSFHGDTEIGKYAAEQLLQTAPDSSAAHILMANIYSSREKWKERAKTIKRMKAM 566

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           GV K TGISWIEIE + H FVV+DKMHPQ + I+ VL+EL  +M+DEGY P+KRFIL
Sbjct: 567 GVTKGTGISWIEIEHKTHCFVVEDKMHPQEEAIYDVLSELFPVMVDEGYRPDKRFIL 623



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 59/228 (25%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L+  Y KC  + +A K+F+     D VS   ++ G  +NG  +    FF R L+ G
Sbjct: 315 IESALMDMYSKCGSIEDAWKIFESTEEVDEVSMTLILVGLAQNGSEEEAIQFFIRMLQAG 374

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             ++D    + +L       +S V K+                                 
Sbjct: 375 V-EIDANVVSAVLG------VSFVDKL--------------------------------- 394

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-- 268
              FG    RN ++W ++I+    +      LKL+ +M +  + P  +T+LS + ACS  
Sbjct: 395 ---FGS---RNYVSWNSMIAAFACHGHGLAALKLYEEMIMQDVKPTDVTFLSLLHACSHA 448

Query: 269 -----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
                G + L + + ++GI  K   +   CI    +DM  + G +++A
Sbjct: 449 GLIDKGRELLNDMKDVYGI--KPRTEHYTCI----IDMLGRAGLMKEA 490



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           E+ + +AL+  Y KCGS     K+F      + ++ T ++ GL QN   EE ++ F++M
Sbjct: 312 ELCIESALMDMYSKCGSIEDAWKIFESTEEVDEVSMTLILVGLAQNGSEEEAIQFFIRM 370


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 338/558 (60%), Gaps = 1/558 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++  +L S Y KC  + NA ++FD MP RD VSWN +++G+ +NG+       F   +++
Sbjct: 156 IVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSE-MQV 214

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + + ++   ++  C         K IHC     G E +V V N L+  Y KCG+ ++
Sbjct: 215 NGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNT 274

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F  M +R+V +W A+I G   N  + E L  F +M +  I PNS+T +S + AC+ 
Sbjct: 275 AHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L AL +G+QIHG   +   +S+  + +AL++MY+KCG+V  A+++FE   + + V+   I
Sbjct: 335 LFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAI 394

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G++Q+G   EA+ LF++M   GI+ D   + +VL       +L  GKQIH   I+S F
Sbjct: 395 ISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF 454

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN  V  GL+++Y+KCG++  + K+F RM  ++ VSW +MI A+  HG+G  AL L+ +
Sbjct: 455 ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G +   + F ++L ACSH GLV++G+++ + M   + ++P+ EHYAC+VD++GRAG
Sbjct: 515 MQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAG 574

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA   I+ M ++PD  VW ALLGAC IH + E+G+ AA+ LF   PD+   Y+L++N
Sbjct: 575 HLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSN 634

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ + RW++ AK  K MKE GV K+ G S + + + V +F+V D+ HPQ++ I+ +L  
Sbjct: 635 IYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEI 694

Query: 630 LLRLMIDEGYVPNKRFIL 647
           L   M   GYVPN    L
Sbjct: 695 LYEQMRKAGYVPNTNLAL 712



 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 241/439 (54%), Gaps = 29/439 (6%)

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-------DQASFTIILSACDRSEL 171
           + V W   + G+++NG       F+ ++L L +YQ+       D+  F  ++ AC     
Sbjct: 84  NAVVWKETIIGYVKNG-------FWNKALRL-YYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
               + +H  +   G+E +V VG AL + Y KCGS  + R+VF  M  R+V++W A+I+G
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             QN    E L LF +M +  I PNS T +S +  C+ L AL +G+QIH    +  ++SD
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + + L++MY+KCG+V  A ++FE     D  S   I+ G++ N    EA+  F +M  
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            GI+ +   + +VL       +L  G+QIH   I+S F SN  V N L+NMY+KCG++  
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           + K+F RM  +N V+WN++I+ +++HG+  +AL L+ EM+ +G++P     +S+L AC+H
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKP 525
              + +G        ++H  + R+   + V      VD+  + G +  A+   ERMP + 
Sbjct: 436 FLALEQG-------KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQ 487

Query: 526 DVLVWQALLGACSIHGDSE 544
           DV+ W  ++ A  IHG  E
Sbjct: 488 DVVSWTTMILAYGIHGHGE 506


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/604 (36%), Positives = 358/604 (59%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LLS  A  G  + G  LH+  IK            + +  +I  SLL  Y+KC  
Sbjct: 315 VTVASLLSACASVGAGYKGKQLHSYVIKM----------GMSSDLIIEGSLLDLYVKCFD 364

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A + F      + V WN M+  + + G     +  F + +++     +Q ++  IL 
Sbjct: 365 IETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQ-MQIEGLMPNQYTYPSILR 423

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C       + + IH  V   G++  V V + LI  Y K G   + R +   +R  +V++
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVS 483

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+I+G  Q+ L+ E LKLF +M    I  +++ + S++ AC+G+QAL +G+QIH   +
Sbjct: 484 WTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSY 543

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 DL I +AL+ +Y++CG  +DA+  FE  +  D +S   ++ GFAQ+G  EEA+Q
Sbjct: 544 ISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQ 603

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F +M +AG+E +     + +       ++  GKQIH+++IK+ + S    +N LI +YS
Sbjct: 604 VFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYS 663

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+ + F  M  +N VSWN+MI  +++HG G +A+ L+EEMK  G+ P  VTF+ 
Sbjct: 664 KCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVG 723

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLVN+G+ + +SM++ H + P+ EHY CVVD++GRA LL  AR FIE MP++
Sbjct: 724 VLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIE 783

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           PD ++W+ LL AC++H + E+G++AA  L   +P+  A Y+L++N+Y+ SG+W  R +  
Sbjct: 784 PDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTR 843

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           + MK+ GV KE G SWIE++  +H+F V D++HP A+ I+  + +L     + GYV ++ 
Sbjct: 844 QMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRY 903

Query: 645 FILH 648
            +L+
Sbjct: 904 NLLN 907



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 152/547 (27%), Positives = 275/547 (50%), Gaps = 33/547 (6%)

Query: 11  NSNFPFCSSLVSPFITKIIQDPTSS------TSKLVLDNYVDISRLLSISAKEGHFHLGP 64
           +SN  F + ++S  + K +            T  +  D     S L + S  +  F +  
Sbjct: 73  SSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTE 132

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
            +HA  I           +   ++ ++ N L+  Y K   +  A  +F+ + ++D+VSW 
Sbjct: 133 QIHAKIIH----------HGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWV 182

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS-------FTIILSACDRSELSLVSKM 177
            M+SG  +NG  D           L F Q+ +++       F+ +LSAC + EL  + + 
Sbjct: 183 AMISGLSQNGREDEAI--------LLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQ 234

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H  +   G   E  V NAL+T Y + G+  +  ++F +M  R+ I++ ++ISGL Q   
Sbjct: 235 LHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGF 294

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            +  L+LF KM L  + P+ +T  S + AC+ + A  +G+Q+H  + K+ + SDL IE +
Sbjct: 295 SDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGS 354

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+D+Y KC  +E A + F   E  + V   V+LV + Q G   E+  +F++M   G+  +
Sbjct: 355 LLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPN 414

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                ++L       +L LG+QIH+ +IKS F  N +V + LI+MY+K G+L+ +  +  
Sbjct: 415 QYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQ 474

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           R+   + VSW +MIA + +H    +AL+L++EM+ +G+   ++ F S + AC+ +  +N+
Sbjct: 475 RLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQ 534

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G + + + + +   S        +V +  R G   +A    E++  K D + W AL+   
Sbjct: 535 GQQ-IHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK-DNISWNALISGF 592

Query: 538 SIHGDSE 544
           +  G  E
Sbjct: 593 AQSGHCE 599



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 145/492 (29%), Positives = 250/492 (50%), Gaps = 23/492 (4%)

Query: 57  EGHFHLG-----PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKL 111
           EG F+ G       LHA   K+   FD ++V        + + L+  YL   ++ NA+KL
Sbjct: 18  EGCFNSGSLLDAKKLHARIFKS--GFDGEDV--------LGSRLIDIYLAHGEVDNAIKL 67

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FDD+P  +   WN ++SG L         G F   +       D+++F  +L AC   + 
Sbjct: 68  FDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTP-DESTFASVLRACSGGKA 126

Query: 172 SL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
              V++ IH  +   G+     V N LI  Y K G     + VF  + +++ ++W A+IS
Sbjct: 127 PFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMIS 186

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL QN   +E + LF +MH   + P    + S + AC+ ++    G Q+HG + K  L S
Sbjct: 187 GLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSS 246

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +  + +AL+ +YS+ G++  A QIF      D +S   ++ G AQ GF + A+QLF KM 
Sbjct: 247 ETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQ 306

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
              ++ D   V+++L       +   GKQ+HS +IK   +S+  +   L+++Y KC D+E
Sbjct: 307 LDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIE 366

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + + F      N V WN M+ A+ + GN  ++  ++ +M++EG+ P   T+ S+L  C+
Sbjct: 367 TAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCT 426

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVL 528
            +G ++ G +     T+V +   +   Y C  ++DM  + G L  AR  ++R+  + DV+
Sbjct: 427 SLGALDLGEQI---HTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVV 482

Query: 529 VWQALLGACSIH 540
            W A++   + H
Sbjct: 483 SWTAMIAGYTQH 494



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 243/494 (49%), Gaps = 13/494 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS   K   F LG  LH   +K          + + + T + N+L++ Y +   +  
Sbjct: 217 SSVLSACTKIELFKLGEQLHGFIVK----------WGLSSETFVCNALVTLYSRWGNLIA 266

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++F  M  RD +S+N+++SG  + G  D     F++ ++L   + D  +   +LSAC 
Sbjct: 267 AEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEK-MQLDCMKPDCVTVASLLSACA 325

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   K +H  V   G   ++ +  +L+  Y KC    +  + F      NV+ W  
Sbjct: 326 SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNV 385

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           ++    Q     E   +F++M +  + PN  TY S +  C+ L AL  G QIH  + K  
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            Q ++ + S L+DMY+K G ++ A  I +   E D VS T ++ G+ Q+    EA++LF 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M   GI  D    S+ +       +L  G+QIH+    S ++ +  + N L+++Y++CG
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCG 565

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
             +D+   F ++  ++++SWN++I+ FA+ G+  +AL+++ +M   GVE    TF S + 
Sbjct: 566 RAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVS 625

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           A ++   + +G +    M +    S   E    ++ +  + G + +A+     MP K +V
Sbjct: 626 ATANTANIKQGKQIHAMMIKTGYDS-ETEASNVLITLYSKCGSIEDAKREFFEMPEK-NV 683

Query: 528 LVWQALLGACSIHG 541
           + W A++   S HG
Sbjct: 684 VSWNAMITGYSQHG 697



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/325 (33%), Positives = 179/325 (55%), Gaps = 1/325 (0%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           ++  +   C  S   L +K +H  ++  G++ E  +G+ LI  Y   G   +  K+F ++
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-G 276
              NV  W  VISGL+  +L  + L LF  M    + P+  T+ S + ACSG +A  +  
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
            QIH  +      S   + + L+D+YSK G V+ A  +FE     D VS   ++ G +QN
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G E+EA+ LF +M K+ +   P + S+VL          LG+Q+H  I+K   +S  FV 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L+ +YS+ G+L  + ++FS+M  R+ +S+NS+I+  A+ G   +AL+L+E+M+L+ ++
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEF 481
           P  VT  SLL AC+ VG   KG + 
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQL 336



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 156/333 (46%), Gaps = 9/333 (2%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           I  N  TYL     C    +L + +++H  ++K     +  + S L+D+Y   G V++A 
Sbjct: 6   IRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAI 65

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVD 371
           ++F+     +      ++ G        + + LF  M+   +  D +  ++VL    G  
Sbjct: 66  KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGK 125

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
               + +QIH+ II   F S+P V N LI++YSK G ++ +  VF R+  ++SVSW +MI
Sbjct: 126 APFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMI 185

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           +  +++G   +A+ L+ +M    V PT   F S+L AC+ + L   G +    +    + 
Sbjct: 186 SGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIV---KW 242

Query: 492 SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
              +E + C  +V +  R G LI A     +M  + D + + +L+   +  G S+     
Sbjct: 243 GLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH-RRDRISYNSLISGLAQRGFSDRALQL 301

Query: 550 AEKLFL--AQPDSPAPYILMANIYSCSGRWKER 580
            EK+ L   +PD      L++   S    +K +
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/615 (35%), Positives = 360/615 (58%), Gaps = 15/615 (2%)

Query: 38  KLVLD----NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           K+ LD    + V ++ LLS  +  G   +G   H+  IK            + +  ++  
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA----------GMSSDIILEG 411

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +LL  Y+KC  ++ A + F      + V WN M+  +      +  F  F + +++   +
Sbjct: 412 ALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQ-MQMEGIE 470

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            +Q ++  IL  C       + + IH  V   G++  V V + LI  Y K G      K+
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  ++ ++V++WTA+I+G  Q++ + E L LF +M    I+ +++ + S++ AC+G+QAL
Sbjct: 531 FRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQAL 590

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +G+QIH          DL + +AL+ +Y++CG V DA+  F+     D +S   ++ GF
Sbjct: 591 NQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGF 650

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQ+G  EEA+ LF +M KAG EI+       +       ++ LGKQIH++IIK+   S  
Sbjct: 651 AQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSET 710

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V+N LI +Y+KCG+++D+ + F  M  +N +SWN+M+  +++HG+GFKAL L+E+MK  
Sbjct: 711 EVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQL 770

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           GV P  VTF+ +L ACSHVGLV++G+++ +SM EVH + P+ EHYACVVD++GR+GLL  
Sbjct: 771 GVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSR 830

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           AR F+E MP++PD +V + LL AC +H + ++G++AA  L   +P   A Y+L++N+Y+ 
Sbjct: 831 ARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAV 890

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +G+W  R +  + MK+ GV KE G SWIE+   VH+F   D+ HP  D I+  L +L  L
Sbjct: 891 TGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNEL 950

Query: 634 MIDEGYVPNKRFILH 648
             + GY+P    +L+
Sbjct: 951 AAENGYIPQTNSLLN 965



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/485 (30%), Positives = 253/485 (52%), Gaps = 13/485 (2%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           FH    +HA  I           +   N+  + N L+  Y K   + +A K+FD +  RD
Sbjct: 186 FHCVEKIHARTI----------THGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRD 235

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +VSW  M+SG  ++G  +     F +    G Y      F+ +LSAC + E   V + +H
Sbjct: 236 SVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYI-FSSVLSACTKVEFYKVGEQLH 294

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            LV   G+  E  V NAL+T Y + G+     +VF  M  R+ +++ ++ISGL Q    +
Sbjct: 295 GLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSD 354

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L+LF KM L  + P+ +T  S + ACS + AL  G+Q H    K  + SD+ +E AL+
Sbjct: 355 KALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALL 414

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           D+Y KC  ++ A + F   E  + V   V+LV +       E+ ++F +M   GIE +  
Sbjct: 415 DLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQF 474

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
              ++L       ++ LG+QIH+ ++K+ F  N +V++ LI+MY+K G L+ ++K+F R+
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRL 534

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             ++ VSW +MIA +A+H    +AL L++EM+ +G+   ++ F S + AC+ +  +N+G 
Sbjct: 535 KEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQ 594

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           + + +   V   S        +V +  R G + +A    +++  K D + W +L+   + 
Sbjct: 595 Q-IHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSK-DNISWNSLISGFAQ 652

Query: 540 HGDSE 544
            G  E
Sbjct: 653 SGHCE 657



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 235/454 (51%), Gaps = 8/454 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   L+  Y+    +  AV +FD+MP+R    WN ++  F+         G F+R L+ 
Sbjct: 104 VLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQE 163

Query: 150 GFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              + D+ ++  +L  C   ++     + IH      GYE  + V N LI  YFK G  +
Sbjct: 164 KV-KPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLN 222

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S +KVF  ++ R+ ++W A++SGL Q+   EE + LF +MH   + P    + S + AC+
Sbjct: 223 SAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACT 282

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            ++    G Q+HG++ K     +  + +AL+ +YS+ G+   A Q+F    + D VS   
Sbjct: 283 KVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNS 342

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G +Q G+ ++A++LF KM    ++ D   V+++L       +L +GKQ HS  IK+ 
Sbjct: 343 LISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAG 402

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            +S+  +   L+++Y KC D++ + + F      N V WN M+ A+    N  ++ +++ 
Sbjct: 403 MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFT 462

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVG 506
           +M++EG+EP   T+ S+L  CS +  V+ G +     T+V +   +   Y  + ++DM  
Sbjct: 463 QMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQI---HTQVLKTGFQFNVYVSSVLIDMYA 519

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           + G L  A     R+  K DV+ W A++   + H
Sbjct: 520 KLGKLDHALKIFRRLKEK-DVVSWTAMIAGYAQH 552



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 150/509 (29%), Positives = 244/509 (47%), Gaps = 43/509 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS   K   + +G  LH   +K     +          T + N+L++ Y +      
Sbjct: 275 SSVLSACTKVEFYKVGEQLHGLVLKQGFSLE----------TYVCNALVTLYSRLGNFIP 324

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++F+ M  RD VS+N+++SG  + G  D     FK+ + L   + D  +   +LSAC 
Sbjct: 325 AEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKK-MCLDCLKPDCVTVASLLSACS 383

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                LV K  H      G   ++ +  AL+  Y KC    +  + F      NV+ W  
Sbjct: 384 SVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNV 443

Query: 228 --VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             V  GL+ N    E  K+F +M +  I PN  TY S +  CS L+A+  G QIH  + K
Sbjct: 444 MLVAYGLLDN--LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLK 501

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
              Q ++ + S L+DMY+K G ++ A +IF   +E D VS T ++ G+AQ+    EA+ L
Sbjct: 502 TGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNL 561

Query: 346 FVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F +M   GI  D     SA+    G+  +L  G+QIH+    S ++ +  V N L+++Y+
Sbjct: 562 FKEMQDQGIHSDNIGFASAISACAGIQ-ALNQGQQIHAQACVSGYSDDLSVGNALVSLYA 620

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF-- 462
           +CG + D+   F ++  ++++SWNS+I+ FA+ G+  +AL L+ +M   G E    TF  
Sbjct: 621 RCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGP 680

Query: 463 ---------LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
                       L    H  ++  G +   S TEV  +         ++ +  + G + +
Sbjct: 681 AVSAAANVANVKLGKQIHAMIIKTGHD---SETEVSNV---------LITLYAKCGNIDD 728

Query: 514 A-RSFIERMPVKPDVLVWQALLGACSIHG 541
           A R F E MP K ++  W A+L   S HG
Sbjct: 729 AERQFFE-MPEKNEI-SWNAMLTGYSQHG 755



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 186/383 (48%), Gaps = 5/383 (1%)

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLELGFYQLDQASF 159
           K  Q R  V +F     +  +  NT +S    N E +  G  F     E G  + +  ++
Sbjct: 15  KIKQFRPVVSIF--FFFQKFLEHNTALSYAYSNDEGEANGINFLHLMEERGV-RANSQTY 71

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L  C  S        +H  +   G+  EV +   L+  Y   G       VF EM V
Sbjct: 72  LWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPV 131

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQ 278
           R +  W  V+   V  ++    L LF +M    + P+  TY   +  C G         +
Sbjct: 132 RPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEK 191

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH        ++ L + + L+D+Y K G +  A ++F+  ++ D VS   +L G +Q+G 
Sbjct: 192 IHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGC 251

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           EEEA+ LF +M  +G+   P + S+VL          +G+Q+H L++K  F+   +V N 
Sbjct: 252 EEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNA 311

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L+ +YS+ G+   + +VF+ M  R+ VS+NS+I+  ++ G   KALEL+++M L+ ++P 
Sbjct: 312 LVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPD 371

Query: 459 DVTFLSLLHACSHVGLVNKGMEF 481
            VT  SLL ACS VG +  G +F
Sbjct: 372 CVTVASLLSACSSVGALLVGKQF 394



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 147/316 (46%), Gaps = 17/316 (5%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           +  NS TYL  +  C       +G ++HG + K+   +++ +   LMD+Y   G ++ A 
Sbjct: 64  VRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAV 123

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVD 371
            +F+            +L  F         + LF +M++  ++ D    + VL G  G D
Sbjct: 124 TVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGD 183

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
                 ++IH+  I   + ++ FV N LI++Y K G L  + KVF  +  R+SVSW +M+
Sbjct: 184 VPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAML 243

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           +  ++ G   +A+ L+ +M   GV PT   F S+L AC+ V       EF K   ++H +
Sbjct: 244 SGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKV-------EFYKVGEQLHGL 296

Query: 492 SPRA----EHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
             +     E Y C  +V +  R G  I A      M ++ D + + +L+   S  G S+ 
Sbjct: 297 VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM-LQRDEVSYNSLISGLSQQGYSDK 355

Query: 546 GKYAAEKLFLA--QPD 559
                +K+ L   +PD
Sbjct: 356 ALELFKKMCLDCLKPD 371


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 337/546 (61%), Gaps = 5/546 (0%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K+FD MP R+ V+W  M++ F + G        F   +EL  Y  D+ +++ +LSAC
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSAC 259

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVI 223
               L  + K +H  V   G   +V VG +L+  Y KC   GS    RKVF +M   NV+
Sbjct: 260 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 319

Query: 224 TWTAVISGLVQN-QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +WTA+I+  VQ+ +  +E ++LF KM  G I PN  ++ S + AC  L     G Q++  
Sbjct: 320 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 379

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             KL + S  C+ ++L+ MY++ G +EDA + F+   E + VS   I+ G+A+N   EEA
Sbjct: 380 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 439

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
             LF ++   GI I     +++L       ++G G+QIH  ++K  + SN  + N LI+M
Sbjct: 440 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 499

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YS+CG++E + +VF+ M  RN +SW SMI  FA+HG   +ALE++ +M   G +P ++T+
Sbjct: 500 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 559

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSHVG++++G +   SM + H I PR EHYAC+VD++GR+GLL+EA  FI  MP
Sbjct: 560 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 619

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           +  D LVW+ LLGAC +HG++E+G++AAE +   +PD PA YIL++N+++ +G+WK+  K
Sbjct: 620 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 679

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MKE  + KE G SWIE+E +VH F V +  HPQA  I+  L +L   + + GY+P+
Sbjct: 680 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 739

Query: 643 KRFILH 648
             F+LH
Sbjct: 740 TDFVLH 745



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 275/555 (49%), Gaps = 24/555 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S LL    +  +F LG  +H   +++    D          +V+ N+L+S Y KC     
Sbjct: 48  SILLKSCIRFRNFQLGKLVHRKLMQSGLELD----------SVVLNTLISLYSKCGDTET 97

Query: 108 AVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           A  +F+ M   RD VSW+ MVS F  N         F   LELGFY  ++  F  ++ AC
Sbjct: 98  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP-NEYCFAAVIRAC 156

Query: 167 DRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFK-CGSSSSGRKVFGEMRVRNVIT 224
             +  + V ++I+  V   GY E +V VG  LI  + K  G   S  KVF +M  RN++T
Sbjct: 157 SNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVT 216

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT +I+   Q     + + LF+ M L    P+  TY S + AC+ L  L  G+Q+H  + 
Sbjct: 217 WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 276

Query: 285 KLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEE 340
           +L L  D+C+  +L+DMY+KC   GSV+D+ ++FE   E + +S T I+  + Q+G  ++
Sbjct: 277 RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDK 336

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA++LF KM+   I  +    S+VL   G  +    G+Q++S  +K    S   V N LI
Sbjct: 337 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 396

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MY++ G +ED+ K F  +  +N VS+N+++  +A++    +A  L+ E+   G+  +  
Sbjct: 397 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 456

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF SLL   + +G + KG +    + +    S +    A ++ M  R G +  A      
Sbjct: 457 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-LISMYSRCGNIEAAFQVFNE 515

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWK 578
           M  + +V+ W +++   + HG +        K+ L     P     +A + +CS  G   
Sbjct: 516 MEDR-NVISWTSMITGFAKHGFATRALEMFHKM-LETGTKPNEITYVAVLSACSHVGMIS 573

Query: 579 ERAKAIKRM-KEMGV 592
           E  K    M KE G+
Sbjct: 574 EGQKHFNSMYKEHGI 588



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 176/326 (53%), Gaps = 9/326 (2%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +++I+L +C R     + K++H  +   G E +  V N LI+ Y KCG + + R +F
Sbjct: 43  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 102

Query: 215 GEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQA 272
             M   R++++W+A++S    N +  + +  F+ M  LG   PN   + + + ACS    
Sbjct: 103 EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PNEYCFAAVIRACSNANY 161

Query: 273 LCEGRQIHGILWKLA-LQSDLCIESALMDMYSK-CGSVEDAWQIFEFAEELDGVSMTVIL 330
              G  I+G + K   L++D+C+   L+DM+ K  G +  A+++F+   E + V+ T+++
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             FAQ G   +A+ LF+ M  +G   D    S+VL        L LGKQ+HS +I+    
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 391 SNPFVNNGLINMYSKC---GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK-ALEL 446
            +  V   L++MY+KC   G ++DS KVF +M   N +SW ++I A+ + G   K A+EL
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 341

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHV 472
           + +M    + P   +F S+L AC ++
Sbjct: 342 FCKMISGHIRPNHFSFSSVLKACGNL 367



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 150/292 (51%), Gaps = 16/292 (5%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+  TY   + +C   +    G+ +H  L +  L+ D  + + L+ +YSKCG  E A  I
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 315 FE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           FE    + D VS + ++  FA N  E +A+  F+ M++ G   +    +AV+        
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 374 LGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMI 431
             +G+ I+  ++K+ +  ++  V   LI+M+ K  GDL  + KVF +M  RN V+W  MI
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             FA+ G    A++L+ +M+L G  P   T+ S+L AC+ +GL+  G +     + V R+
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL---HSRVIRL 278

Query: 492 SPRAEHYACV----VDMVGRA---GLLIEARSFIERMPVKPDVLVWQALLGA 536
               +   CV    VDM  +    G + ++R   E+MP + +V+ W A++ A
Sbjct: 279 GLALD--VCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/546 (39%), Positives = 337/546 (61%), Gaps = 5/546 (0%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K+FD MP R+ V+W  M++ F + G        F   +EL  Y  D+ +++ +LSAC
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSAC 241

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVI 223
               L  + K +H  V   G   +V VG +L+  Y KC   GS    RKVF +M   NV+
Sbjct: 242 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 301

Query: 224 TWTAVISGLVQN-QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +WTA+I+  VQ+ +  +E ++LF KM  G I PN  ++ S + AC  L     G Q++  
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 361

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             KL + S  C+ ++L+ MY++ G +EDA + F+   E + VS   I+ G+A+N   EEA
Sbjct: 362 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 421

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
             LF ++   GI I     +++L       ++G G+QIH  ++K  + SN  + N LI+M
Sbjct: 422 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 481

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YS+CG++E + +VF+ M  RN +SW SMI  FA+HG   +ALE++ +M   G +P ++T+
Sbjct: 482 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 541

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSHVG++++G +   SM + H I PR EHYAC+VD++GR+GLL+EA  FI  MP
Sbjct: 542 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 601

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           +  D LVW+ LLGAC +HG++E+G++AAE +   +PD PA YIL++N+++ +G+WK+  K
Sbjct: 602 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 661

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MKE  + KE G SWIE+E +VH F V +  HPQA  I+  L +L   + + GY+P+
Sbjct: 662 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 721

Query: 643 KRFILH 648
             F+LH
Sbjct: 722 TDFVLH 727



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 168/555 (30%), Positives = 275/555 (49%), Gaps = 24/555 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S LL    +  +F LG  +H   +++    D          +V+ N+L+S Y KC     
Sbjct: 30  SILLKSCIRFRNFQLGKLVHRKLMQSGLELD----------SVVLNTLISLYSKCGDTET 79

Query: 108 AVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           A  +F+ M   RD VSW+ MVS F  N         F   LELGFY  ++  F  ++ AC
Sbjct: 80  ARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP-NEYCFAAVIRAC 138

Query: 167 DRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFK-CGSSSSGRKVFGEMRVRNVIT 224
             +  + V ++I+  V   GY E +V VG  LI  + K  G   S  KVF +M  RN++T
Sbjct: 139 SNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVT 198

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT +I+   Q     + + LF+ M L    P+  TY S + AC+ L  L  G+Q+H  + 
Sbjct: 199 WTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI 258

Query: 285 KLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEE 340
           +L L  D+C+  +L+DMY+KC   GSV+D+ ++FE   E + +S T I+  + Q+G  ++
Sbjct: 259 RLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDK 318

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA++LF KM+   I  +    S+VL   G  +    G+Q++S  +K    S   V N LI
Sbjct: 319 EAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLI 378

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MY++ G +ED+ K F  +  +N VS+N+++  +A++    +A  L+ E+   G+  +  
Sbjct: 379 SMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAF 438

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF SLL   + +G + KG +    + +    S +    A ++ M  R G +  A      
Sbjct: 439 TFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA-LISMYSRCGNIEAAFQVFNE 497

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWK 578
           M  + +V+ W +++   + HG +        K+ L     P     +A + +CS  G   
Sbjct: 498 MEDR-NVISWTSMITGFAKHGFATRALEMFHKM-LETGTKPNEITYVAVLSACSHVGMIS 555

Query: 579 ERAKAIKRM-KEMGV 592
           E  K    M KE G+
Sbjct: 556 EGQKHFNSMYKEHGI 570



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 176/326 (53%), Gaps = 9/326 (2%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +++I+L +C R     + K++H  +   G E +  V N LI+ Y KCG + + R +F
Sbjct: 25  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84

Query: 215 GEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQA 272
             M   R++++W+A++S    N +  + +  F+ M  LG   PN   + + + ACS    
Sbjct: 85  EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PNEYCFAAVIRACSNANY 143

Query: 273 LCEGRQIHGILWKLA-LQSDLCIESALMDMYSK-CGSVEDAWQIFEFAEELDGVSMTVIL 330
              G  I+G + K   L++D+C+   L+DM+ K  G +  A+++F+   E + V+ T+++
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             FAQ G   +A+ LF+ M  +G   D    S+VL        L LGKQ+HS +I+    
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 263

Query: 391 SNPFVNNGLINMYSKC---GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK-ALEL 446
            +  V   L++MY+KC   G ++DS KVF +M   N +SW ++I A+ + G   K A+EL
Sbjct: 264 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 323

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHV 472
           + +M    + P   +F S+L AC ++
Sbjct: 324 FCKMISGHIRPNHFSFSSVLKACGNL 349



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 150/292 (51%), Gaps = 16/292 (5%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+  TY   + +C   +    G+ +H  L +  L+ D  + + L+ +YSKCG  E A  I
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 315 FE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           FE    + D VS + ++  FA N  E +A+  F+ M++ G   +    +AV+        
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 374 LGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMI 431
             +G+ I+  ++K+ +  ++  V   LI+M+ K  GDL  + KVF +M  RN V+W  MI
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             FA+ G    A++L+ +M+L G  P   T+ S+L AC+ +GL+  G +     + V R+
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL---HSRVIRL 260

Query: 492 SPRAEHYACV----VDMVGRA---GLLIEARSFIERMPVKPDVLVWQALLGA 536
               +   CV    VDM  +    G + ++R   E+MP + +V+ W A++ A
Sbjct: 261 GLALD--VCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/566 (39%), Positives = 350/566 (61%), Gaps = 18/566 (3%)

Query: 94  SLLSFYLKCD-QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF- 151
           +L+  ++K +  + +A K+FD MP R+ V+W  M++ F +        GF + +++L   
Sbjct: 83  ALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ-------LGFSRDAVDLFLD 135

Query: 152 -----YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-- 204
                Y  D+ + + ++SAC    L  + +  HCLV   G + +V VG +L+  Y KC  
Sbjct: 136 MVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVA 195

Query: 205 -GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLS 262
            GS    RKVF  M V NV++WTA+I+G VQ+     E ++LF++M  G + PN  T+ S
Sbjct: 196 DGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSS 255

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+ L  +  G Q++ ++ K+ L S  C+ ++L+ MYS+CG++E+A + F+   E +
Sbjct: 256 VLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKN 315

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   I+  +A++   EEA +LF ++  AG  ++    +++L       ++G G+QIHS
Sbjct: 316 LVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHS 375

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            I+KS F SN  + N LI+MYS+CG++E + +VF+ M   N +SW SMI  FA+HG   +
Sbjct: 376 RILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATR 435

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           ALE + +M   GV P +VT++++L ACSHVGL+++G++  KSM   H I PR EHYACVV
Sbjct: 436 ALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVV 495

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++GR+G L EA   +  MP K D LV +  LGAC +HG+ ++GK+AAE +    P  PA
Sbjct: 496 DLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPA 555

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            YIL++N+++ +G+W+E A+  K+MKE  + KE G SWIE+E +VH F V D  HPQA  
Sbjct: 556 AYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQE 615

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  L +L   + + GY+P+  F+LH
Sbjct: 616 IYDELDQLALKIKELGYIPSTDFVLH 641



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 251/486 (51%), Gaps = 17/486 (3%)

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           RD VSW+ ++S +  N +       F   LE GFY  ++  FT +  AC   E   + K+
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYP-NEYCFTGVFRACSNKENISLGKI 63

Query: 178 IHCLVYLCGY-EEEVTVGNALITSYFKC-GSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           I   +   GY E +V VG ALI  + K  G   S  KVF  M  RNV+TWT +I+   Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
               + + LF+ M L    P+  T    V AC+ +  L  GRQ H ++ K  L  D+C+ 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 296 SALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQN-GFEEEAMQLFVKMVK 351
            +L+DMY+KC   GSV+DA ++F+     + +S T I+ G+ Q+ G + EA++LF++MV+
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ +    S+VL      + + LG+Q+++L++K    S   V N LI+MYS+CG++E+
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           + K F  +  +N VS+N+++ A+A+  N  +A EL+ E++  G      TF SLL   S 
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           +G + KG +     + + +   ++  + C  ++ M  R G +  A      M    +V+ 
Sbjct: 364 IGAIGKGEQI---HSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVIS 419

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRM 587
           W +++   + HG +        K+  A   SP     +A + +CS  G   E  K  K M
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGV-SPNEVTYIAVLSACSHVGLISEGLKHFKSM 478

Query: 588 K-EMGV 592
           K E G+
Sbjct: 479 KVEHGI 484



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 188/419 (44%), Gaps = 58/419 (13%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+   S +L   A      LG  ++A  +K            + +   + NSL+S Y +C
Sbjct: 249 NHFTFSSVLKACANLSDIWLGEQVYALVVKM----------RLASINCVGNSLISMYSRC 298

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             M NA K FD +  ++ VS+NT+V+ + ++   +  F  F   +E     ++  +F  +
Sbjct: 299 GNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNE-IEGAGTGVNAFTFASL 357

Query: 163 LSACDRSELSLVSK--MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           LS    S +  + K   IH  +   G++  + + NALI+ Y +CG+  +  +VF EM   
Sbjct: 358 LSGA--SSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDG 415

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           NVI+WT++I+G  ++      L+ F KM    ++PN +TY++ + ACS +  + EG +  
Sbjct: 416 NVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLK-- 473

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                                + K   VE           ++  +  V L+G  ++G  E
Sbjct: 474 ---------------------HFKSMKVEHG-----IVPRMEHYACVVDLLG--RSGHLE 505

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EAM+L   M     + D  ++   LG   V  ++ LGK    +I++ D   +P     L 
Sbjct: 506 EAMELVNSM---PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQD-PHDPAAYILLS 561

Query: 401 NMYSKCGDLEDSIKVFSRMAPRN-----SVSW----NSMIAAFARHGNGFKALELYEEM 450
           N+++  G  E+  ++  +M  RN       SW    N +   +    +  +A E+Y+E+
Sbjct: 562 NLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDEL 620


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 335/545 (61%), Gaps = 5/545 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+FD MP R+ V+W  M++ F + G        F   +EL  Y  D+ +++ +LSAC 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSACT 67

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVIT 224
              L  + K +H  V   G   +V VG +L+  Y KC   GS    RKVF +M   NV++
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 225 WTAVISGLVQN-QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           WTA+I+   Q+ +  +E ++LF KM  G I PN  ++ S + AC  L     G Q++   
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            KL + S  C+ ++L+ MY++ G +EDA + F+   E + VS   I+ G+A+N   EEA 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF ++   GI I     +++L       ++G G+QIH  ++K  + SN  + N LI+MY
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           S+CG++E + +VF+ M  RN +SW SMI  FA+HG   +ALE++ +M   G +P ++T++
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           ++L ACSHVG++++G +   SM + H I PR EHYAC+VD++GR+GLL+EA  FI  MP+
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             D LVW+ LLGAC +HG++E+G++AAE +   +PD PA YIL++N+++ +G+WK+  K 
Sbjct: 428 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 487

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            K MKE  + KE G SWIE+E +VH F V +  HPQA  I+  L +L   + + GY+P+ 
Sbjct: 488 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 547

Query: 644 RFILH 648
            F+LH
Sbjct: 548 DFVLH 552



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 171/381 (44%), Gaps = 42/381 (11%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN------VPNATVIWNSLLSFYLKC 102
           +++S   +  HF     L A      +P+  + VY+      + +   + NSL+S Y + 
Sbjct: 151 KMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 209

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M +A K FD +  ++ VS+N +V G+ +N + +  F  F    + G   +   +F  +
Sbjct: 210 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASL 268

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LS           + IH  +   GY+    + NALI+ Y +CG+  +  +VF EM  RNV
Sbjct: 269 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 328

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           I+WT++I+G  ++      L++F KM      PN +TY++ + ACS +  + EG++    
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK---- 384

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
                             MY + G V            ++  +  V L+G  ++G   EA
Sbjct: 385 --------------HFNSMYKEHGIV----------PRMEHYACMVDLLG--RSGLLVEA 418

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           M+    M    +  D  +   +LG   V  +  LG+    +I++ +   +P     L N+
Sbjct: 419 MEFINSM---PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE-PDDPAAYILLSNL 474

Query: 403 YSKCGDLEDSIKVFSRMAPRN 423
           ++  G  +D +K+   M  RN
Sbjct: 475 HASAGQWKDVVKIRKSMKERN 495


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/545 (39%), Positives = 335/545 (61%), Gaps = 5/545 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+FD MP R+ V+W  M++ F + G        F   +EL  Y  D+ +++ +LSAC 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLF-LDMELSGYVPDRFTYSSVLSACT 62

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVIT 224
              L  + K +H  V   G   +V VG +L+  Y KC   GS    RKVF +M   NV++
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 225 WTAVISGLVQN-QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           WTA+I+   Q+ +  +E ++LF KM  G I PN  ++ S + AC  L     G Q++   
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            KL + S  C+ ++L+ MY++ G +EDA + F+   E + VS   I+ G+A+N   EEA 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF ++   GI I     +++L       ++G G+QIH  ++K  + SN  + N LI+MY
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           S+CG++E + +VF+ M  RN +SW SMI  FA+HG   +ALE++ +M   G +P ++T++
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           ++L ACSHVG++++G +   SM + H I PR EHYAC+VD++GR+GLL+EA  FI  MP+
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             D LVW+ LLGAC +HG++E+G++AAE +   +PD PA YIL++N+++ +G+WK+  K 
Sbjct: 423 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 482

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            K MKE  + KE G SWIE+E +VH F V +  HPQA  I+  L +L   + + GY+P+ 
Sbjct: 483 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 542

Query: 644 RFILH 648
            F+LH
Sbjct: 543 DFVLH 547



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 171/381 (44%), Gaps = 42/381 (11%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN------VPNATVIWNSLLSFYLKC 102
           +++S   +  HF     L A      +P+  + VY+      + +   + NSL+S Y + 
Sbjct: 146 KMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARS 204

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M +A K FD +  ++ VS+N +V G+ +N + +  F  F    + G   +   +F  +
Sbjct: 205 GRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI-GISAFTFASL 263

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LS           + IH  +   GY+    + NALI+ Y +CG+  +  +VF EM  RNV
Sbjct: 264 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 323

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           I+WT++I+G  ++      L++F KM      PN +TY++ + ACS +  + EG++    
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK---- 379

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
                             MY + G V            ++  +  V L+G  ++G   EA
Sbjct: 380 --------------HFNSMYKEHGIV----------PRMEHYACMVDLLG--RSGLLVEA 413

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           M+    M    +  D  +   +LG   V  +  LG+    +I++ +   +P     L N+
Sbjct: 414 MEFINSM---PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE-PDDPAAYILLSNL 469

Query: 403 YSKCGDLEDSIKVFSRMAPRN 423
           ++  G  +D +K+   M  RN
Sbjct: 470 HASAGQWKDVVKIRKSMKERN 490


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 358/604 (59%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V I+ LL+  A  G  + G  LH+  +K     D           +I  SLL  Y+KC  
Sbjct: 245 VTIASLLAACASIGDLNKGKQLHSYLLKAGMSPD----------YIIEGSLLDLYVKCGV 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+++F      + V WN M+  + +  +    F  F + +  G  + ++ ++  +L 
Sbjct: 295 IVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGV-RPNEFTYPCLLR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     R++   +  ++V++
Sbjct: 354 TCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  +E L+ F  M L  I P+++   S++ AC+G++A+ +G+QIH  ++
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +D+ I +AL+++Y++CG  ++A+ +FE  E  D ++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALE 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F+KM +AG++ +     + +        +  GKQIH+ +IK+  TS   V N LI++Y 
Sbjct: 534 VFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+   F  M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 594 KCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIG 653

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM+  H I PR +HYACVVD++GRAG L  AR F+E MPV 
Sbjct: 654 VLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVS 713

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            + +VW+ LL AC +H + E+G+ AA+ L   +P   A Y+L++N Y+ +G+W  R    
Sbjct: 714 ANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVR 773

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MK+ GV KE G SWIE++  VH+F V D++HP A  I+  LA+L   +   GY+    
Sbjct: 774 KMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNY 833

Query: 645 FILH 648
           F+ H
Sbjct: 834 FLFH 837



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 241/476 (50%), Gaps = 13/476 (2%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           H+ L P +HA  I             +    +  N L+  Y K   ++ A ++F+ +  R
Sbjct: 57  HWPLVPVIHAKAITC----------GLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSAR 106

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D VSW  M+SG+ RNG  +   G + +    G         + +LSAC ++ L    +++
Sbjct: 107 DNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYV-LSSVLSACTKAALFEQGRLV 165

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  VY  G   E  VGNALI  Y + GS S   +VF EM   + +T+  +IS   Q    
Sbjct: 166 HAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNG 225

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E  L++F +M L    P+ +T  S + AC+ +  L +G+Q+H  L K  +  D  IE +L
Sbjct: 226 ESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSL 285

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +D+Y KCG + +A +IF+  +  + V   ++LV + Q     ++  LF +MV AG+  + 
Sbjct: 286 LDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNE 345

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
                +L        + LG+QIH L IK+ F S+ +V+  LI+MYSK G L+ + ++   
Sbjct: 346 FTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEV 405

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ VSW SMIA + +H    +ALE +++M+L G+ P ++   S + AC+ +  + +G
Sbjct: 406 LEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG 465

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            + + S   V   S     +  +V++  R G   EA S  E +  K D + W  ++
Sbjct: 466 QQ-IHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMV 519


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 332/558 (59%), Gaps = 2/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  ++LS Y KC  M +A+++FD +  R+ VSW  M++GF ++G  D  F FF + +E G
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ +F  IL AC         + I   +   GY  +  V  AL++ Y KCGS    
Sbjct: 409 I-EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF ++  +NV+ W A+I+  VQ++ Y+  L  F  +    I PNS T+ S +  C   
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  G+ +H ++ K  L+SDL + +AL+ M+  CG +  A  +F    + D VS   I+
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF Q+G  + A   F  M ++GI+ D    + +L       +L  G+++H+LI ++ F 
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V  GLI+MY+KCG +ED+ +VF ++  +N  SW SMIA +A+HG G +ALEL+ +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQM 707

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + EGV+P  +TF+  L AC+H GL+ +G+   +SM E + I PR EHY C+VD+ GRAGL
Sbjct: 708 QQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRAGL 766

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FI +M V+PD  VW ALLGAC +H + E+ + AA+K     P+    +++++NI
Sbjct: 767 LNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNI 826

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G WKE AK  K M + GV K+ G SWIE++ +VH+F  DDK HPQ + IH  L  L
Sbjct: 827 YAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERL 886

Query: 631 LRLMIDEGYVPNKRFILH 648
              M   GYVP+ R++LH
Sbjct: 887 HMEMRQLGYVPDTRYVLH 904



 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 156/514 (30%), Positives = 276/514 (53%), Gaps = 24/514 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ ++KC  + +A K+FD++P RD V+W +M++G  R+G F      F+R  E G
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q D+ +F  +L AC+  E     K +H  +   G++ E+ VG A+++ Y KCGS    
Sbjct: 308 V-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF  ++ RNV++WTA+I+G  Q+   +E    F KM    I PN +T++S + ACS  
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+QI   + +    SD  + +AL+ MY+KCGS++DA ++FE   + + V+   ++
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+   + A+  F  ++K GI+ + +  +++L V     SL LGK +H LI+K+   
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V+N L++M+  CGDL  +  +F+ M  R+ VSWN++IA F +HG    A + ++ M
Sbjct: 547 SDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMM 606

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVD 503
           +  G++P  +TF  LL+AC+    + +G      +TE          + C       ++ 
Sbjct: 607 QESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA--------AFDCDVLVGTGLIS 658

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  + G + +A     ++P K +V  W +++   + HG    GK A E  +  Q +   P
Sbjct: 659 MYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHG---RGKEALELFYQMQQEGVKP 714

Query: 564 --YILMANIYSC--SGRWKERAKAIKRMKEMGVD 593
                +  + +C  +G  +E     + MKE  ++
Sbjct: 715 DWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/488 (28%), Positives = 276/488 (56%), Gaps = 35/488 (7%)

Query: 78  DNQNVYN------VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           D + +YN      V     + N+L++ Y KC    +A ++FDDM  +D  SWN ++ G++
Sbjct: 128 DGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G ++  F   ++ ++    + D+ +F  +L+AC  +      + ++ L+   G++ ++
Sbjct: 188 QHGLYEEAFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            VG ALI  + KCG      KVF  +  R+++TWT++I+GL ++  +++   LF +M   
Sbjct: 247 FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+ + ++S + AC+  +AL +G+++H  + ++   +++ + +A++ MY+KCGS+EDA
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFG 369
            ++F+  +  + VS T ++ GFAQ+G  +EA   F KM+++GIE  PN V+  ++LG   
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE--PNRVTFMSILGACS 424

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
             ++L  G+QI   II++ + S+  V   L++MY+KCG L+D+ +VF +++ +N V+WN+
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNA 484

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKG 478
           MI A+ +H     AL  ++ +  EG++P   TF S+L+ C            H  ++  G
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG 544

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           +E     +++H  +        +V M    G L+ A++    MP K D++ W  ++    
Sbjct: 545 LE-----SDLHVSNA-------LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFV 591

Query: 539 IHGDSEMG 546
            HG +++ 
Sbjct: 592 QHGKNQVA 599



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 187/348 (53%), Gaps = 10/348 (2%)

Query: 197 LITSYFKCGSSSSGR-KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           ++T+ F  G    GR  VF +  +++     AV++ L +   + E +++  ++    I  
Sbjct: 52  MLTTSFS-GRCPKGRCVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQI 108

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
              TY + +  C   + L +G +I+  + K  +Q D+ + + L++MY+KCG+   A QIF
Sbjct: 109 YRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIF 168

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E D  S  ++L G+ Q+G  EEA +L  +MV+  ++ D     ++L       ++ 
Sbjct: 169 DDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVD 228

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G+++++LI+K+ + ++ FV   LINM+ KCGD+ D+ KVF  +  R+ V+W SMI   A
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           RHG   +A  L++ M+ EGV+P  V F+SLL AC+H   + +G +    M EV       
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV---GWDT 345

Query: 496 EHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           E Y    ++ M  + G + +A    + +  + +V+ W A++   + HG
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHG 392



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
           FA+  D      +L   ++ G   EAMQ+  ++  + I+I     SA+L +     +LG 
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G++I++ I KS    + F+ N LINMY+KCG+   + ++F  M  ++  SWN ++  + +
Sbjct: 129 GERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRIS 492
           HG   +A +L+E+M  + V+P   TF+S+L+AC+    V+KG E     LK+  +     
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
             A     +++M  + G + +A    + +P + D++ W +++   + HG  +      ++
Sbjct: 249 GTA-----LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 553 LFL--AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           +     QPD  A ++ +    +     ++  K   RMKE+G D E
Sbjct: 303 MEEEGVQPDKVA-FVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 15/89 (16%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   L+S Y KC  + +A ++F  +P ++  SW +M++G+ ++G         K +LEL
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGR-------GKEALEL 703

Query: 150 GFYQLDQA-------SFTIILSACDRSEL 171
            FYQ+ Q        +F   LSAC  + L
Sbjct: 704 -FYQMQQEGVKPDWITFVGALSACAHAGL 731


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/558 (38%), Positives = 331/558 (59%), Gaps = 2/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  ++LS Y KC  M +A+++FD +  R+ VSW  M++GF ++G  D  F FF + +E G
Sbjct: 349 VGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESG 408

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ +F  IL AC         + I   +   GY  +  V  AL++ Y KCGS    
Sbjct: 409 I-EPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDA 467

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF ++  +NV+ W A+I+  VQ++ Y+  L  F  +    I PNS T+ S +  C   
Sbjct: 468 HRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  G+ +H ++ K  L+SDL + +AL+ M+  CG +  A  +F    + D VS   I+
Sbjct: 528 DSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTII 587

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF Q+G  + A   F  M ++GI+ D    + +L       +L  G+++H+LI ++ F 
Sbjct: 588 AGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFD 647

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V  GLI+MY+KCG +ED+ +VF ++  +N  SW SMI  +A+HG G +ALEL+ +M
Sbjct: 648 CDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQM 707

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + EGV+P  +TF+  L AC+H GL+ +G+   +SM E + I PR EHY C+VD+ GRAGL
Sbjct: 708 QQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRAGL 766

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FI +M V+PD  VW ALLGAC +H + E+ + AA+K     P+    +++++NI
Sbjct: 767 LNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNI 826

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G WKE AK  K M + GV K+ G SWIE++ +VH+F  DDK HPQ + IH  L  L
Sbjct: 827 YAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERL 886

Query: 631 LRLMIDEGYVPNKRFILH 648
              M   GYVP+ R++LH
Sbjct: 887 HMEMRQLGYVPDTRYVLH 904



 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/514 (30%), Positives = 276/514 (53%), Gaps = 24/514 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ ++KC  + +A K+FD++P RD V+W +M++G  R+G F      F+R  E G
Sbjct: 248 VGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG 307

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q D+ +F  +L AC+  E     K +H  +   G++ E+ VG A+++ Y KCGS    
Sbjct: 308 V-QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF  ++ RNV++WTA+I+G  Q+   +E    F KM    I PN +T++S + ACS  
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+QI   + +    SD  + +AL+ MY+KCGS++DA ++FE   + + V+   ++
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+   + A+  F  ++K GI+ + +  +++L V     SL LGK +H LI+K+   
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V+N L++M+  CGDL  +  +F+ M  R+ VSWN++IA F +HG    A + ++ M
Sbjct: 547 SDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMM 606

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVD 503
           +  G++P  +TF  LL+AC+    + +G      +TE          + C       ++ 
Sbjct: 607 QESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA--------AFDCDVLVGTGLIS 658

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  + G + +A     ++P K +V  W +++   + HG    GK A E  +  Q +   P
Sbjct: 659 MYTKCGSIEDAHQVFHKLP-KKNVYSWTSMITGYAQHG---RGKEALELFYQMQQEGVKP 714

Query: 564 --YILMANIYSC--SGRWKERAKAIKRMKEMGVD 593
                +  + +C  +G  +E     + MKE  ++
Sbjct: 715 DWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748



 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 142/488 (29%), Positives = 277/488 (56%), Gaps = 35/488 (7%)

Query: 78  DNQNVYN------VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           D + +YN      V     +WN+L++ Y KC    +A ++FDDM  +D  SWN ++ G++
Sbjct: 128 DGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYV 187

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G ++  F   ++ ++    + D+ +F  +L+AC  +      + ++ L+   G++ ++
Sbjct: 188 QHGLYEEAFKLHEQMVQDSV-KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDL 246

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            VG ALI  + KCG      KVF  +  R+++TWT++I+GL ++  +++   LF +M   
Sbjct: 247 FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE 306

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+ + ++S + AC+  +AL +G+++H  + ++   +++ + +A++ MY+KCGS+EDA
Sbjct: 307 GVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDA 366

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFG 369
            ++F+  +  + VS T ++ GFAQ+G  +EA   F KM+++GIE  PN V+  ++LG   
Sbjct: 367 LEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE--PNRVTFMSILGACS 424

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
             ++L  G+QI   II++ + S+  V   L++MY+KCG L+D+ +VF +++ +N V+WN+
Sbjct: 425 SPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNA 484

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKG 478
           MI A+ +H     AL  ++ +  EG++P   TF S+L+ C            H  ++  G
Sbjct: 485 MITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAG 544

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           +E     +++H  +        +V M    G L+ A++    MP K D++ W  ++    
Sbjct: 545 LE-----SDLHVSNA-------LVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFV 591

Query: 539 IHGDSEMG 546
            HG +++ 
Sbjct: 592 QHGKNQVA 599



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 187/348 (53%), Gaps = 10/348 (2%)

Query: 197 LITSYFKCGSSSSGR-KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           ++T+ F  G    GR  VF +  +++     AV++ L +   + E +++  ++    I  
Sbjct: 52  MLTTSFS-GRCPKGRCVVFAD--IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQI 108

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
              TY + +  C   + L +G +I+  + K  +Q D+ + + L++MY+KCG+   A QIF
Sbjct: 109 YRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIF 168

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E D  S  ++L G+ Q+G  EEA +L  +MV+  ++ D     ++L       ++ 
Sbjct: 169 DDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVD 228

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G+++++LI+K+ + ++ FV   LINM+ KCGD+ D+ KVF  +  R+ V+W SMI   A
Sbjct: 229 KGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLA 288

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           RHG   +A  L++ M+ EGV+P  V F+SLL AC+H   + +G +    M EV       
Sbjct: 289 RHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEV---GWDT 345

Query: 496 EHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           E Y    ++ M  + G + +A    + +  + +V+ W A++   + HG
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMIAGFAQHG 392



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 145/285 (50%), Gaps = 13/285 (4%)

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
           FA+  D      +L   ++ G   EAMQ+  ++  + I+I     SA+L +     +LG 
Sbjct: 69  FADIKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGD 128

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G++I++ I KS    + F+ N LINMY+KCG+   + ++F  M  ++  SWN ++  + +
Sbjct: 129 GERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQ 188

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRIS 492
           HG   +A +L+E+M  + V+P   TF+S+L+AC+    V+KG E     LK+  +     
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
             A     +++M  + G + +A    + +P + D++ W +++   + HG  +      ++
Sbjct: 249 GTA-----LINMHIKCGDIGDATKVFDNLPTR-DLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 553 LFL--AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           +     QPD  A ++ +    +     ++  K   RMKE+G D E
Sbjct: 303 MEEEGVQPDKVA-FVSLLRACNHPEALEQGKKVHARMKEVGWDTE 346



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 15/89 (16%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   L+S Y KC  + +A ++F  +P ++  SW +M++G+ ++G         K +LEL
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGR-------GKEALEL 703

Query: 150 GFYQLDQA-------SFTIILSACDRSEL 171
            FYQ+ Q        +F   LSAC  + L
Sbjct: 704 -FYQMQQEGVKPDWITFVGALSACAHAGL 731


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 351/604 (58%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LLS  A  G    G  LH+  IK            + +  ++  +LL  Y+ C  
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKA----------GISSDMIVEGALLDLYVNCSD 364

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           ++ A ++F      + V WN M+  F +       F  F R +++     +Q ++  IL 
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIF-RQMQIKGLIPNQFTYPSILR 423

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C       + + IH  V   G++  V V + LI  Y K G   +   +   +   +V++
Sbjct: 424 TCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS 483

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+ISG  Q+ L+ E LK F +M    I  +++ + S++ AC+G+QAL +GRQIH   +
Sbjct: 484 WTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 543

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 DL I +AL+ +Y++CG +++A+  FE  +  D +S   ++ GFAQ+G+ E+A++
Sbjct: 544 VSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALK 603

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F +M +A +E       + +       ++  GKQIH++IIK  F S+  V+N LI  Y+
Sbjct: 604 VFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYA 663

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+ + F  M  +N VSWN+MI  +++HG G +A+ L+E+MK  G  P  VTF+ 
Sbjct: 664 KCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVG 723

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV KG+ + +SM++ H + P+  HYACVVD++ RAG L  AR FIE MP++
Sbjct: 724 VLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE 783

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           PD  +W+ LL AC++H + E+G++AA+ L   +P+  A Y+L++N+Y+ SG+W  R +  
Sbjct: 784 PDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTR 843

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           + M+  GV KE G SWIE++  VH+F V D++HP AD I+  LAEL +   + GY  ++ 
Sbjct: 844 QMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRY 903

Query: 645 FILH 648
            +L+
Sbjct: 904 SLLN 907



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/457 (28%), Positives = 231/457 (50%), Gaps = 8/457 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N +V+ N L+  Y     +   VK+F+DMP R   SW+ ++SGF+     +     F   
Sbjct: 43  NESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCM 102

Query: 147 LELGFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +E       + SF  +L AC    + +  ++ IH  +   G      + N LI  Y K G
Sbjct: 103 IEENV-SPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNG 161

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
              S RKVF  +  ++ ++W A+ISG  QN   EE + LF +MH   I P    + S + 
Sbjct: 162 LIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLS 221

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C+ ++    G Q+H +++K     +  + +AL+ +YS+  +   A ++F   +  D VS
Sbjct: 222 GCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVS 281

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G AQ GF + A++LF KM +  ++ D   V+++L     + +L  G+Q+HS +I
Sbjct: 282 FNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVI 341

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+  +S+  V   L+++Y  C D++ + ++F      N V WN M+ AF +  N  ++  
Sbjct: 342 KAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFR 401

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVD 503
           ++ +M+++G+ P   T+ S+L  C+ VG ++ G +     T+V +   +   Y C  ++D
Sbjct: 402 IFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQI---HTQVIKTGFQFNVYVCSVLID 458

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           M  + G L  A   I R   + DV+ W AL+   + H
Sbjct: 459 MYAKHGKLDTAH-VILRTLTEDDVVSWTALISGYAQH 494



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 240/494 (48%), Gaps = 13/494 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS   K   F +G  LHA   K          Y     T + N+L++ Y +     +
Sbjct: 217 SSVLSGCTKIKLFDVGEQLHALVFK----------YGSSLETYVCNALVTLYSRMPNFVS 266

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+F  M  +D VS+N+++SG  + G  D     F + ++  + + D  +   +LSAC 
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK-MKRDYLKPDCVTVASLLSACA 325

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            +      + +H  V   G   ++ V  AL+  Y  C    +  ++F   +  NV+ W  
Sbjct: 326 SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNV 385

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           ++    +     E  ++F +M +  + PN  TY S +  C+ + AL  G QIH  + K  
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTG 445

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            Q ++ + S L+DMY+K G ++ A  I     E D VS T ++ G+AQ+    EA++ F 
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFK 505

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M+  GI+ D    S+ +       +L  G+QIH+    S ++ +  + N L+++Y++CG
Sbjct: 506 EMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCG 565

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            ++++   F ++  ++S+SWN +I+ FA+ G    AL+++ +M    +E +  TF S + 
Sbjct: 566 RIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVS 625

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           A +++  + +G + + +M          E    ++    + G + +AR     MP K DV
Sbjct: 626 AAANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDV 684

Query: 528 LVWQALLGACSIHG 541
             W A++   S HG
Sbjct: 685 -SWNAMITGYSQHG 697



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 173/325 (53%), Gaps = 1/325 (0%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           ++  +L  C  S   +  K +H  +   G+  E  + N L+  YF  G      KVF +M
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEG 276
             R+V +W  +ISG ++ ++    L LF  M    ++P  +++ S + ACSG +  +   
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
            QIH  +    L     I + L+ +Y+K G +  A ++F+     D VS   ++ GF+QN
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G+EEEA+ LF +M  AGI   P + S+VL          +G+Q+H+L+ K   +   +V 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L+ +YS+  +   + KVFS+M  ++ VS+NS+I+  A+ G    ALEL+ +MK + ++
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEF 481
           P  VT  SLL AC+  G + KG + 
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQL 336



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 136/282 (48%), Gaps = 7/282 (2%)

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
           H G I  N  TY+  +  C    +L E +++HG + KL   ++  + + L+D+Y   G +
Sbjct: 3   HRG-ICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDL 61

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGV 367
           +   ++FE        S   I+ GF +       + LF  M++  +   + +  S +   
Sbjct: 62  DGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRAC 121

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
            G    +   +QIH+ II      +P ++N LI +Y+K G +  + KVF  +  ++SVSW
Sbjct: 122 SGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSW 181

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +MI+ F+++G   +A+ L+ EM   G+ PT   F S+L  C+ + L + G E L ++  
Sbjct: 182 VAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVG-EQLHAL-- 238

Query: 488 VHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDV 527
           V +     E Y C  +V +  R    + A     +M  K +V
Sbjct: 239 VFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K++H  I+K  F +   + N L+++Y   GDL+  +KVF  M  R+  SW+ +I+ F   
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEK 89

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               + L+L+  M  E V PT+++F S+L ACS   +  +  E + +    H +      
Sbjct: 90  KMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPII 149

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
              ++ +  + GL+I AR   + +  K D + W A++   S +G  E     A  LF   
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTK-DSVSWVAMISGFSQNGYEE----EAIHLFCEM 204

Query: 558 PDS---PAPYILMANIYSCS 574
             +   P PY+  + +  C+
Sbjct: 205 HTAGIFPTPYVFSSVLSGCT 224


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/553 (40%), Positives = 330/553 (59%), Gaps = 5/553 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + +SL++ Y K      A K+FD MP R++VSW TM+SG+          G F+  R  E
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    ++  FT +LSA    EL    K IHC+    G    V+VGNAL+T Y KCGS  
Sbjct: 205 EG---ENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              + F     +N ITW+A+I+G  Q+   ++ LKLF  MHL  I P+  T++  + ACS
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A  EG+Q+H  L KL  +S + + +AL+DMY+KC S+ DA + F++ +E D V  T 
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+ QNG  E+A+ L+ +M   GI  +   +++VL       +L  GKQIH+  +K  
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F     + + L  MY+KCG L+D   VF RM  R+ +SWN+MI+  +++G G +ALEL+E
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+LEG +P  VTF+++L ACSH+GLV +G  + + M +   + PR EHYAC+VD++ RA
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRA 561

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  F E   +   + +W+ +LGAC  + + E+G YA EKL        + Y+L++
Sbjct: 562 GKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLS 621

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           +IYS  GRW++  +  + MK  GV KE G SWIE++  VH FVV D+MHPQ   IH  L 
Sbjct: 622 SIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELR 681

Query: 629 ELLRLMIDEGYVP 641
           +L + M DEGY P
Sbjct: 682 QLSKQMKDEGYEP 694



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 161/526 (30%), Positives = 264/526 (50%), Gaps = 41/526 (7%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G +LHA  IK+     +  VY       I NSL++ Y KC ++R A  +F+ +  +D VS
Sbjct: 25  GKALHAQIIKS----SSSCVY-------IANSLVNLYAKCQRLREAKFVFERIQNKDVVS 73

Query: 123 WNTMVSGFLRNGEFDMG--FGFFKRSLELG-------FYQLDQASFTIILSACDRSELSL 173
           WN +++G+ ++G          F+R            F  +  A+ T++ +A  R   ++
Sbjct: 74  WNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAV 133

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             KM  C         +V VG++L+  Y K G +   RKVF  M  RN ++W  +ISG  
Sbjct: 134 AIKMDSC--------RDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYA 185

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
             +L  E L LF  M       N   + S + A +  + +  G+QIH I  K  L S + 
Sbjct: 186 SQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVS 245

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +AL+ MY+KCGS++DA Q FE + + + ++ + ++ G+AQ+G  ++A++LF  M  +G
Sbjct: 246 VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSG 305

Query: 354 IEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           I   P+  + V GV    + LG    GKQ+H  ++K  F S  +V   L++MY+KC  + 
Sbjct: 306 IR--PSEFTFV-GVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIV 362

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           D+ K F  +   + V W SMI  + ++G    AL LY  M++EG+ P ++T  S+L ACS
Sbjct: 363 DARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACS 422

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            +  + +G + + + T  +         + +  M  + G L +      RMP + DV+ W
Sbjct: 423 SLAALEQGKQ-IHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR-DVISW 480

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANIYS-CS 574
            A++   S +G    GK A E     Q +   P Y+   NI S CS
Sbjct: 481 NAMISGLSQNG---CGKEALELFEEMQLEGTKPDYVTFVNILSACS 523


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 337/565 (59%), Gaps = 16/565 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L++ Y KC +MR+A  LFD M  RD V WN M+ G+++ G     F  F      G  +
Sbjct: 223 ALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGL-R 281

Query: 154 LDQASFTIILSAC-----DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            D+ S  +IL+ C     D  EL    K +H +    G + +V+V N+L+  Y K G + 
Sbjct: 282 PDEFSVQLILNGCLWAGTDDLELG---KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAY 338

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPN-----SLTYLS 262
             R+VF +M+  ++I+W ++IS   Q+ L EE + LF+ + H GL  P+     S+T  +
Sbjct: 339 FAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL-KPDHFTLASITLAT 397

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +  AC  L  L +G+QIH    K    SDL + S ++DMY KCG + +A  +F +    D
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 457

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            V+ T ++ G   NG E++A++++ +M ++ +  D    + ++      T+L  G+Q+H+
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            +IK D  S+PFV   L++MY+KCG++ED+ ++F +M  RN   WN+M+   A+HGN  +
Sbjct: 518 NVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 577

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           A+ L++ MK  G+EP  V+F+ +L ACSH GL ++  E+L SM   + I P  EHY+C+V
Sbjct: 578 AVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLV 637

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D +GRAGL+ EA   IE MP K    + +ALLGAC I GD E GK  A +LF  +P   A
Sbjct: 638 DALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSA 697

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+L++NIY+ + RW +   A K MK   V K+ G SWI+++  +H FVVDD+ HPQAD 
Sbjct: 698 AYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADI 757

Query: 623 IHGVLAELLRLMIDEGYVPNKRFIL 647
           I+  + E+++ + ++GYVP+  F+L
Sbjct: 758 IYDKVEEMMKTIREDGYVPDTEFVL 782



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 242/465 (52%), Gaps = 17/465 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL-----RNGEFDMGFGFFKRSL 147
           N+LL+ Y KC  + +A ++FD  P RD V+WN ++  +       +G    G   F R L
Sbjct: 116 NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLL 174

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                   + +   +L  C  S     ++ +H      G E +V V  AL+  Y KCG  
Sbjct: 175 RASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRM 234

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R +F  MR R+V+ W  ++ G VQ  L +E  +LF + H   + P+  +    +  C
Sbjct: 235 RDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGC 294

Query: 268 --SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             +G   L  G+Q+HGI  K  L SD+ + ++L++MYSK G    A ++F   + LD +S
Sbjct: 295 LWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLIS 354

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-----GVFGVDTSLGLGKQI 380
              ++   AQ+  EEE++ LF+ ++  G++ D   ++++         G    L  GKQI
Sbjct: 355 WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQI 414

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+  IK+ F S+  VN+G+++MY KCGD+ ++  VF+ ++  + V+W SMI+    +GN 
Sbjct: 415 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNE 474

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYA 499
            +AL +Y  M+   V P + TF +L+ A S V  + +G +   ++ ++  +S P      
Sbjct: 475 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--T 532

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            +VDM  + G + +A    ++M V+ ++ +W A+L   + HG++E
Sbjct: 533 SLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 576



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 194/390 (49%), Gaps = 22/390 (5%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           L+ K  H  + + G   +  + N L+T Y KCGS SS R+VF     R+++TW A++   
Sbjct: 94  LLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAY 153

Query: 233 V-----QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
                  +   +EGL LF  +   L +   +T    +  C     L     +HG   K+ 
Sbjct: 154 AASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 213

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L+ D+ +  AL+++YSKCG + DA  +F++  E D V   ++L G+ Q G E+EA QLF 
Sbjct: 214 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 273

Query: 348 KMVKAGIEIDPNMVSAVLG--VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           +  ++G+  D   V  +L   ++     L LGKQ+H + +KS   S+  V N L+NMYSK
Sbjct: 274 EFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSK 333

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G    + +VF+ M   + +SWNSMI++ A+     +++ L+ ++  EG++P   T  S+
Sbjct: 334 MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASI 393

Query: 466 L-----HACSHVGLVNKGMEFLKSMTEVHRISPRAEH----YACVVDMVGRAGLLIEARS 516
                  AC  + L+++G +        H I    +      + ++DM  + G ++ A  
Sbjct: 394 TLATAAKACGCLVLLDQGKQI-----HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGI 448

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMG 546
               +   PD + W +++  C  +G+ +  
Sbjct: 449 VFNYISA-PDDVAWTSMISGCVDNGNEDQA 477



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 12/255 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IK    FD+    N        + +L  Y+KC  M NA  +F+ +   D V+
Sbjct: 411 GKQIHAHAIKA--GFDSDLHVN--------SGILDMYIKCGDMVNAGIVFNYISAPDDVA 460

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W +M+SG + NG  D     + R +       D+ +F  ++ A          + +H  V
Sbjct: 461 WTSMISGCVDNGNEDQALRIYHR-MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 519

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                  +  VG +L+  Y KCG+     ++F +M VRN+  W A++ GL Q+   EE +
Sbjct: 520 IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAV 579

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESALMDM 301
            LF  M    I P+ ++++  + ACS      E  + +H +     ++ ++   S L+D 
Sbjct: 580 NLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDA 639

Query: 302 YSKCGSVEDAWQIFE 316
             + G V++A ++ E
Sbjct: 640 LGRAGLVQEADKVIE 654


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 351/604 (58%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS LL+  A  G    G  LH+   K            + +  ++  SLL  Y+KC  
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKA----------GISSDYIMEGSLLDLYVKCGD 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+ +F+     + V WN M+  F +  +    F  F +    G  + +Q ++  IL 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI-RPNQFTYPCILR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     R+V   ++ ++V++
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  ++ L  F +M    I P+++   S++  C+G+ A+ +G QIH  ++
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 D+ I +AL+++Y++CG + +A+  FE  E  DG++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALK 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F++M ++G++ +     + L        +  GKQIH+ +IK+  +    V N LI++Y 
Sbjct: 534 VFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG  ED+   FS M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 594 KCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIG 653

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM++ + I PR +HYACV+D+ GRAG L  A+ FIE MP+ 
Sbjct: 654 VLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D +VW+ LL AC +H + E+G++AA+ L   +P   A Y+L++N Y+ + +W  R +  
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVR 773

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K M++ GV KE G SWIE++  VH+F V D++HP A+ I+  LA +   +   GY   K 
Sbjct: 774 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKY 833

Query: 645 FILH 648
            + H
Sbjct: 834 HLFH 837



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/438 (31%), Positives = 236/438 (53%), Gaps = 2/438 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N L+  Y K   +  A ++F+++  RD VSW  M+SG+ +NG  +   G +++    
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G         + +LS+C ++EL    ++IH   Y  G+  E+ VGNA+IT Y +CGS   
Sbjct: 138 GVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRL 196

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  R+ +T+  +ISG  Q    E  L++F +M    ++P+ +T  S + AC+ 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L +G Q+H  L+K  + SD  +E +L+D+Y KCG VE A  IF  ++  + V   ++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV F Q     ++ +LF +M  AGI  +      +L        + LG+QIHSL +K+ F
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI+MYSK G LE + +V   +  ++ VSW SMIA + +H     AL  ++E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G+ P ++   S +  C+ +  + +G++ + +   V   S     +  +V++  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 510 LLIEARSFIERMPVKPDV 527
            + EA S  E M +K  +
Sbjct: 496 RIREAFSSFEEMELKDGI 513



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 208/435 (47%), Gaps = 20/435 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELGFYQLDQASFTIILSAC-DRSEL 171
           M  R   S    ++GFL + +       F  K     G   LD   F   L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD---FACALRACRGNGRR 57

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V   IH      G  +   VGN LI  Y K G     R+VF E+  R+ ++W A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             QN L EE L L+ +MH   + P      S + +C+  +   +GR IH   +K    S+
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + +A++ +Y +CGS   A ++F      D V+   ++ G AQ G  E A+++F +M  
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G+  D   +S++L        L  G Q+HS + K+  +S+  +   L+++Y KCGD+E 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           ++ +F+     N V WN M+ AF +  +  K+ EL+ +M+  G+ P   T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 472 VGLVNKGMEFLKSMTEVHRISPR----AEHY--ACVVDMVGRAGLLIEARSFIERMPVKP 525
              ++ G        ++H +S +    ++ Y    ++DM  + G L +AR  +E +  K 
Sbjct: 358 TREIDLG-------EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK- 409

Query: 526 DVLVWQALLGACSIH 540
           DV+ W +++     H
Sbjct: 410 DVVSWTSMIAGYVQH 424


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 350/604 (57%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS LL+  A  G    G  LH+   K            + +  ++  SLL  Y+KC  
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKA----------GISSDYIMEGSLLDLYVKCGD 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+ +F+     + V WN M+  F +  +    F  F +    G  + +Q ++  IL 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI-RPNQFTYPCILR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     R+V   ++ ++V++
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  ++ L  F +M    I P+++   S++  C+G+ A+ +G QIH  ++
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 D+ I +AL+++Y++CG + +A+  FE  E  D ++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALK 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F++M ++G++ +     + L        +  GKQIH+ +IK+  +    V N LI++Y 
Sbjct: 534 VFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG  ED+   FS M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 594 KCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIG 653

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM++ + I PR +HYACV+D+ GRAG L  A+ FIE MP+ 
Sbjct: 654 VLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D +VW+ LL AC +H + E+G++AA+ L   +P   A Y+L++N Y+ + +W  R +  
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVR 773

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K M++ GV KE G SWIE++  VH+F V D++HP A+ I+  LA +   +   GY   K 
Sbjct: 774 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKY 833

Query: 645 FILH 648
            + H
Sbjct: 834 HLFH 837



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 3/445 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N L+  Y K   +  A ++F+++  RD VSW  M+SG+ +NG  +   G +++    
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G         + +LS+C ++EL    ++IH   Y  G+  E+ VGNA+IT Y +CGS   
Sbjct: 138 GVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRL 196

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  R+ +T+  +ISG  Q    E  L++F +M    ++P+ +T  S + AC+ 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L +G Q+H  L+K  + SD  +E +L+D+Y KCG VE A  IF  ++  + V   ++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV F Q     ++ +LF +M  AGI  +      +L        + LG+QIHSL +K+ F
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI+MYSK G LE + +V   +  ++ VSW SMIA + +H     AL  ++E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G+ P ++   S +  C+ +  + +G++ + +   V   S     +  +V++  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 510 LLIEARSFIERMPVKPDVLVWQALL 534
            + EA S  E +  K D + W  L+
Sbjct: 496 RIREAFSSFEEIEHK-DEITWNGLV 519



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 208/435 (47%), Gaps = 20/435 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELGFYQLDQASFTIILSAC-DRSEL 171
           M  R   S    ++GFL + +       F  K     G   LD   F   L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD---FACALRACRGNGRR 57

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V   IH      G  +   VGN LI  Y K G     R+VF E+  R+ ++W A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             QN L EE L L+ +MH   + P      S + +C+  +   +GR IH   +K    S+
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + +A++ +Y +CGS   A ++F      D V+   ++ G AQ G  E A+++F +M  
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G+  D   +S++L        L  G Q+HS + K+  +S+  +   L+++Y KCGD+E 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           ++ +F+     N V WN M+ AF +  +  K+ EL+ +M+  G+ P   T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 472 VGLVNKGMEFLKSMTEVHRISPR----AEHY--ACVVDMVGRAGLLIEARSFIERMPVKP 525
              ++ G        ++H +S +    ++ Y    ++DM  + G L +AR  +E +  K 
Sbjct: 358 TREIDLG-------EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK- 409

Query: 526 DVLVWQALLGACSIH 540
           DV+ W +++     H
Sbjct: 410 DVVSWTSMIAGYVQH 424


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 350/604 (57%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS LL+  A  G    G  LH+   K            + +  ++  SLL  Y+KC  
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKA----------GISSDYIMEGSLLDLYVKCGD 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+ +F+     + V WN M+  F +  +    F  F +    G  + +Q ++  IL 
Sbjct: 295 VETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGI-RPNQFTYPCILR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     R+V   ++ ++V++
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  ++ L  F +M    I P+++   S++  C+G+ A+ +G QIH  ++
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 D+ I +AL+++Y++CG + +A+  FE  E  D ++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALK 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F++M ++G++ +     + L        +  GKQIH+ +IK+  +    V N LI++Y 
Sbjct: 534 VFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG  ED+   FS M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 594 KCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIG 653

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM++ + I PR +HYACV+D+ GRAG L  A+ FIE MP+ 
Sbjct: 654 VLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIA 713

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D +VW+ LL AC +H + E+G++AA+ L   +P   A Y+L++N Y+ + +W  R +  
Sbjct: 714 ADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVR 773

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K M++ GV KE G SWIE++  VH+F V D++HP A+ I+  LA +   +   GY   K 
Sbjct: 774 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKY 833

Query: 645 FILH 648
            + H
Sbjct: 834 HLFH 837



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 241/452 (53%), Gaps = 3/452 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N L+  Y K   +  A ++F+++  RD VSW  M+SG+ +NG  +   G +++    
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G         + +LS+C ++EL    ++IH   Y  G+  E+ VGNA+IT Y +CGS   
Sbjct: 138 GVVPTPYV-LSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRL 196

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  R+ +T+  +ISG  Q    E  L++F +M    ++P+ +T  S + AC+ 
Sbjct: 197 AERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACAS 256

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L +G Q+H  L+K  + SD  +E +L+D+Y KCG VE A  IF  ++  + V   ++
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV F Q     ++ +LF +M  AGI  +      +L        + LG+QIHSL +K+ F
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI+MYSK G LE + +V   +  ++ VSW SMIA + +H     AL  ++E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G+ P ++   S +  C+ +  + +G++ + +   V   S     +  +V++  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCG 495

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + EA S  E +  K D + W  L+   +  G
Sbjct: 496 RIREAFSSFEEIEHK-DEITWNGLVSGFAQSG 526



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/435 (28%), Positives = 208/435 (47%), Gaps = 20/435 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELGFYQLDQASFTIILSAC-DRSEL 171
           M  R   S    ++GFL + +       F  K     G   LD   F   L AC      
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLD---FACALRACRGNGRR 57

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V   IH      G  +   VGN LI  Y K G     R+VF E+  R+ ++W A++SG
Sbjct: 58  WQVVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             QN L EE L L+ +MH   + P      S + +C+  +   +GR IH   +K    S+
Sbjct: 118 YAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSE 177

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + +A++ +Y +CGS   A ++F      D V+   ++ G AQ G  E A+++F +M  
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G+  D   +S++L        L  G Q+HS + K+  +S+  +   L+++Y KCGD+E 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVET 297

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           ++ +F+     N V WN M+ AF +  +  K+ EL+ +M+  G+ P   T+  +L  C+ 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 472 VGLVNKGMEFLKSMTEVHRISPR----AEHY--ACVVDMVGRAGLLIEARSFIERMPVKP 525
              ++ G        ++H +S +    ++ Y    ++DM  + G L +AR  +E +  K 
Sbjct: 358 TREIDLG-------EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK- 409

Query: 526 DVLVWQALLGACSIH 540
           DV+ W +++     H
Sbjct: 410 DVVSWTSMIAGYVQH 424


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/604 (34%), Positives = 354/604 (58%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V I+ LL+  +  G    G  LH+  +K     D           ++  SLL  Y+K   
Sbjct: 245 VTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD----------YIMEGSLLDLYVKSGD 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+++FD     + V WN M+  + +  +    F  F R L  G  + ++ ++  +L 
Sbjct: 295 IEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGV-RPNKFTYPCMLR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G++ ++ V   LI  Y K G     +++   +  ++V++
Sbjct: 354 TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  +E L+ F +M    I P+++   S++ AC+G++A+ +G QIH  ++
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +D+ I + L+ +Y++CG  ++A+  FE  E  +G++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALK 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F+KM +AG + +     + +        +  GKQIH+ +IK+ +TS   ++N LI++Y 
Sbjct: 534 VFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+   F  M  RN VSWN++I   ++HG G +AL+L+++MK +G++P+DVTF+ 
Sbjct: 594 KCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVG 653

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM+  H I PR +HYACVVD++GRAG L  A+ F+E MP+ 
Sbjct: 654 VLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIP 713

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D +VW+ LL AC +H + E+G++AA+ L   +P   A Y+L++N Y+ +G+W  R +  
Sbjct: 714 ADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIR 773

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MK+ GV KE G SWIE++  VH+F V D++HP AD I+  L+ L   +   GY     
Sbjct: 774 KIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENY 833

Query: 645 FILH 648
            + H
Sbjct: 834 HLFH 837



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 277/544 (50%), Gaps = 24/544 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           L P +HA  I          +  +    +I N L+  Y K   +R A ++F+++ +RD V
Sbjct: 60  LVPEIHAKAI----------ICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNV 109

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  ++SG+ +NG  +     ++     G         + ILSAC ++EL  + ++IH  
Sbjct: 110 SWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYV-LSSILSACTKTELFQLGRLIHVQ 168

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           VY  G+  E  VGNALI+ Y +C S     +VF +M   + +T+  +ISG  Q    +  
Sbjct: 169 VYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRA 228

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L +F +M L  ++P+S+T  S + ACS +  L +G+Q+H  L K  +  D  +E +L+D+
Sbjct: 229 LGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDL 288

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y K G +E+A QIF+  +  + V   ++LV + Q     ++  +F +M+ AG+  +    
Sbjct: 289 YVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTY 348

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +L        +GLG+QIHSL IK+ F S+ +V+  LI+MYSK G L+ + ++   +  
Sbjct: 349 PCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEE 408

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ VSW SMIA + +H    +ALE ++EM+  G+ P ++   S + AC+ +  V++G + 
Sbjct: 409 KDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQ- 467

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + +   V   S     +  +V +  R G+  EA S  E +  K  +  W  L     I G
Sbjct: 468 IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGI-TWNGL-----ISG 521

Query: 542 DSEMGKY-AAEKLFLAQPDSPAPYILMANIYSCSGRW-----KERAKAIKRMKEMGVDKE 595
            ++ G Y  A K+F+    + A Y +   + S S        K+  +   R+ + G   E
Sbjct: 522 FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSE 581

Query: 596 TGIS 599
           T IS
Sbjct: 582 TEIS 585



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 245/506 (48%), Gaps = 16/506 (3%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S +V   YV +S +LS   K   F LG  +H    K       Q  ++    T + N+L+
Sbjct: 137 SGVVPTPYV-LSSILSACTKTELFQLGRLIHVQVYK-------QGFFS---ETFVGNALI 185

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           S YL+C   R A ++F DM   D+V++NT++SG  + G  D   G F   ++L     D 
Sbjct: 186 SLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDE-MQLSGLSPDS 244

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +   +L+AC         K +H  +   G   +  +  +L+  Y K G      ++F  
Sbjct: 245 VTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDS 304

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
               NV+ W  ++    Q     +   +F +M    + PN  TY   +  C+    +  G
Sbjct: 305 GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
            QIH +  K   QSD+ +   L+DMYSK G ++ A +I +  EE D VS T ++ G+ Q+
Sbjct: 365 EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQH 424

Query: 337 GFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
            F +EA++ F +M   GI  D   + SA+    G+  ++  G QIH+ +  S ++++  +
Sbjct: 425 EFCKEALETFKEMQACGIWPDNIGLASAISACAGI-KAVHQGSQIHARVYVSGYSADVSI 483

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            NGL+ +Y++CG  +++   F  +  +  ++WN +I+ FA+ G   +AL+++ +M   G 
Sbjct: 484 WNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGA 543

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +    TF+S + A +++  + +G +    + +    S   E    ++ + G+ G + +A+
Sbjct: 544 KYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTS-ETEISNALISLYGKCGSIEDAK 602

Query: 516 SFIERMPVKPDVLVWQALLGACSIHG 541
                M  + +V  W  ++  CS HG
Sbjct: 603 MDFFEMTKRNEV-SWNTIITCCSQHG 627



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 223/468 (47%), Gaps = 17/468 (3%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS--ELS 172
           M  R   S+N  ++GFL   + +     F       +  L    F   L AC  S     
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCR-QYMVLGAVDFACALRACRGSGRRWP 59

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           LV + IH    +CG      +GN LI  Y K G     R+VF E+ VR+ ++W AV+SG 
Sbjct: 60  LVPE-IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
            QN L EE ++L+ +MH   + P      S + AC+  +    GR IH  ++K    S+ 
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +AL+ +Y +C S   A ++F      D V+   ++ G AQ G  + A+ +F +M  +
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+  D   ++++L        L  GKQ+HS ++K+  + +  +   L+++Y K GD+E++
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA 298

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           +++F      N V WN M+ A+ +  +  K+ +++  M   GV P   T+  +L  C+H 
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G +  G E + S+T  +           ++DM  + G L +A+  ++ +  K DV+ W +
Sbjct: 359 GEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWTS 416

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQ-----PDSPAPYILMANIYSCSG 575
           ++     H   E  K A E     Q     PD+     L + I +C+G
Sbjct: 417 MIAGYVQH---EFCKEALETFKEMQACGIWPDNIG---LASAISACAG 458


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 333/559 (59%), Gaps = 1/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            +  +L+  Y KC   ++  ++F+ +  RD ++WNTM+ G    G ++     + +    
Sbjct: 381 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQRE 440

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    ++ ++ I+L+AC         + IH  V   G+  +++V NALI+ Y +CGS   
Sbjct: 441 GMMP-NKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKD 499

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F +M  +++I+WTA+I GL ++ L  E L +F  M    + PN +TY S + ACS 
Sbjct: 500 ARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSS 559

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             AL  GR+IH  + +  L +D  + + L++MYS CGSV+DA Q+F+   + D V+   +
Sbjct: 560 PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAM 619

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+A +   +EA++LF ++ + G++ D      +L       SL   K+IHSL++K  +
Sbjct: 620 IGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY 679

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  + N L++ Y+KCG   D++ VF +M  RN +SWN++I   A+HG G   L+L+E 
Sbjct: 680 LSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFER 739

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK+EG++P  VTF+SLL ACSH GL+ +G  +  SM+    I+P  EHY C+VD++GRAG
Sbjct: 740 MKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAG 799

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L E  + I+ MP + +  +W ALLGAC IHG+  + + AAE      PD+ A Y+ +++
Sbjct: 800 QLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSH 859

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+ +G W   AK  K M++ GV KE G SWIE+  ++H FV +D+ HP+++ I+  L +
Sbjct: 860 MYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDK 919

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M  EGYVP+ R ++H
Sbjct: 920 LTHAMKMEGYVPDTRSVMH 938



 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 147/502 (29%), Positives = 269/502 (53%), Gaps = 25/502 (4%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           RLLS          G  +H   +K    FD     NV N       +L+ Y KC  +  A
Sbjct: 249 RLLSSCKSPSALECGREIHVEAMKARLLFD----VNVANC------ILNMYAKCGSIHEA 298

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
            ++FD M  +  VSW  ++ G+   G  ++ F  F++  + G    ++ ++  +L+A   
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVP-NRITYINVLNAFSG 357

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                  K +H  +   G+E ++ VG AL+  Y KCGS    R+VF ++  R++I W  +
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTM 417

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I GL +   +EE  +++ +M    + PN +TY+  + AC    AL  GR+IH  + K   
Sbjct: 418 IGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF 477

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
             D+ +++AL+ MY++CGS++DA  +F      D +S T ++ G A++G   EA+ +F  
Sbjct: 478 MFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQD 537

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M +AG++ +    +++L       +L  G++IH  +I++   ++  V N L+NMYS CG 
Sbjct: 538 MQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGS 597

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           ++D+ +VF RM  R+ V++N+MI  +A H  G +AL+L++ ++ EG++P  VT++++L+A
Sbjct: 598 VKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNA 657

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMP 522
           C++ G     +E+ K   E+H +  +  + +       +V    + G   +A    ++M 
Sbjct: 658 CANSG----SLEWAK---EIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM- 709

Query: 523 VKPDVLVWQALLGACSIHGDSE 544
           +K +V+ W A++G C+ HG  +
Sbjct: 710 MKRNVISWNAIIGGCAQHGRGQ 731



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 259/491 (52%), Gaps = 16/491 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDM--PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           N+L++ Y++C  +  A ++++ +    R   SWN MV G+++ G  +      +   + G
Sbjct: 180 NALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHG 239

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              L +A+   +LS+C         + IH          +V V N ++  Y KCGS    
Sbjct: 240 L-ALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEA 298

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+VF +M  ++V++WT +I G       E   ++F KM    + PN +TY++ + A SG 
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGP 358

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+ +H  +     +SDL + +AL+ MY+KCGS +D  Q+FE     D ++   ++
Sbjct: 359 AALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMI 418

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSD 388
            G A+ G  EEA +++ +M + G+   PN ++ V  L      T+L  G++IHS ++K  
Sbjct: 419 GGLAEGGNWEEASEIYHQMQREGMM--PNKITYVILLNACVNPTALHWGREIHSRVVKDG 476

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  +  V N LI+MY++CG ++D+  +F++M  ++ +SW +MI   A+ G G +AL +++
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P  VT+ S+L+ACS    ++ G    + + E   ++  A     +V+M    
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG-LATDAHVANTLVNMYSMC 595

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP----Y 564
           G + +AR   +RM  + D++ + A++G  + H    +GK A +     Q +   P    Y
Sbjct: 596 GSVKDARQVFDRM-TQRDIVAYNAMIGGYAAH---NLGKEALKLFDRLQEEGLKPDKVTY 651

Query: 565 ILMANIYSCSG 575
           I M N  + SG
Sbjct: 652 INMLNACANSG 662



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 123/397 (30%), Positives = 211/397 (53%), Gaps = 16/397 (4%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIH-CLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           +++   +  +L  C   +  +  + +H  ++  C   ++ TV NALI  Y +CGS    R
Sbjct: 138 RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTV-NALINMYIQCGSIEEAR 196

Query: 212 KVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSSVMA 266
           +V+ ++    R V +W A++ G VQ    EE LKL  +M    L L    ++  LSS   
Sbjct: 197 QVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSS--- 253

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C    AL  GR+IH    K  L  D+ + + +++MY+KCGS+ +A ++F+  E    VS 
Sbjct: 254 CKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSW 313

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
           T+I+ G+A  G  E A ++F KM + G+   PN ++   VL  F    +L  GK +HS I
Sbjct: 314 TIIIGGYADCGHSEIAFEIFQKMQQEGVV--PNRITYINVLNAFSGPAALKWGKTVHSHI 371

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           + +   S+  V   L+ MY+KCG  +D  +VF ++  R+ ++WN+MI   A  GN  +A 
Sbjct: 372 LNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEAS 431

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           E+Y +M+ EG+ P  +T++ LL+AC +   ++ G E    + +   +   +   A ++ M
Sbjct: 432 EIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNA-LISM 490

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             R G + +AR    +M V+ D++ W A++G  +  G
Sbjct: 491 YARCGSIKDARLLFNKM-VRKDIISWTAMIGGLAKSG 526



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N+L+S Y KC    +A+ +FD M  R+ +SWN ++ G  ++G        F+R ++
Sbjct: 683 TSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFER-MK 741

Query: 149 LGFYQLDQASFTIILSACDRSEL 171
           +   + D  +F  +LSAC  + L
Sbjct: 742 MEGIKPDIVTFVSLLSACSHAGL 764


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 329/544 (60%), Gaps = 3/544 (0%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +++A  +FD M  ++ V+W  M++ + + G  D     F R L +  Y  D+ + T +LS
Sbjct: 198 IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLL-VSEYTPDKFTLTSLLS 256

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC   E   + K +H  V   G   +V VG  L+  Y K  +  + RK+F  M   NV++
Sbjct: 257 ACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMS 316

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+ISG VQ++  +E +KLF  M  G + PN  T+ S + AC+ L     G+Q+HG   
Sbjct: 317 WTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTI 376

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           KL L +  C+ ++L++MY++ G++E A + F    E + +S        A+    +E+  
Sbjct: 377 KLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN 436

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
             V+    G+   P   + +L       ++  G+QIH+LI+KS F +N  +NN LI+MYS
Sbjct: 437 HEVE--HTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYS 494

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG+ E +++VF+ M  RN ++W S+I+ FA+HG   KALEL+ EM   GV+P +VT+++
Sbjct: 495 KCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIA 554

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGL+++  +   SM   H ISPR EHYAC+VD++GR+GLL+EA  FI  MP  
Sbjct: 555 VLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFD 614

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D LVW+  LG+C +H ++++G++AA+K+   +P  PA YIL++N+Y+  GRW + A   
Sbjct: 615 ADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALR 674

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MK+  + KETG SWIE++ QVH F V D  HPQA  I+  L EL   + + GY+PN  
Sbjct: 675 KSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTD 734

Query: 645 FILH 648
           F+LH
Sbjct: 735 FVLH 738



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 214/437 (48%), Gaps = 18/437 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S LL    + G+  LG  LH   I +  P D          +V+ NSL++ Y KC    N
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLD----------SVLLNSLITLYSKCGDWEN 92

Query: 108 AVKLFDDM--PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL--GFYQLDQASFTIIL 163
           A+ +F +M    RD VSW+ ++S F  N         F   L+        ++  FT +L
Sbjct: 93  ALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALL 152

Query: 164 SACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCG-SSSSGRKVFGEMRVRN 221
            +C           I   +   GY +  V VG ALI  + K G    S R VF +M+ +N
Sbjct: 153 RSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKN 212

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           ++TWT +I+   Q  L ++ + LF ++ +    P+  T  S + AC  L+    G+Q+H 
Sbjct: 213 LVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHS 272

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + +  L SD+ +   L+DMY+K  +VE++ +IF      + +S T ++ G+ Q+  E+E
Sbjct: 273 WVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQE 332

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A++LF  M+   +  +    S+VL         G+GKQ+H   IK   ++   V N LIN
Sbjct: 333 AIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLIN 392

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY++ G +E + K F+ +  +N +S+N+   A A+  +  ++     E++  GV  +  T
Sbjct: 393 MYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFN--HEVEHTGVGASPFT 450

Query: 462 FLSLLHACSHVGLVNKG 478
           +  LL   + +G + KG
Sbjct: 451 YACLLSGAACIGTIVKG 467



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 9/266 (3%)

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGF 333
           G+ +H  L    L  D  + ++L+ +YSKCG  E+A  IF      + D VS + I+  F
Sbjct: 58  GKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCF 117

Query: 334 AQNGFEEEAMQLFVKMVKAGIEI-DPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSD-F 389
           A N  E  A+  F+ M++    I  PN    +A+L           G  I + ++K+  F
Sbjct: 118 ANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYF 177

Query: 390 TSNPFVNNGLINMYSKCG-DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            S+  V   LI+M++K G D++ +  VF +M  +N V+W  MI  +++ G    A++L+ 
Sbjct: 178 DSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFC 237

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            + +    P   T  SLL AC  +   + G + L S      ++        +VDM  ++
Sbjct: 238 RLLVSEYTPDKFTLTSLLSACVELEFFSLGKQ-LHSWVIRSGLASDVFVGCTLVDMYAKS 296

Query: 509 GLLIEARSFIERMPVKPDVLVWQALL 534
             +  +R     M +  +V+ W AL+
Sbjct: 297 AAVENSRKIFNTM-LHHNVMSWTALI 321



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSM 430
           +L LGK +H  +I S    +  + N LI +YSKCGD E+++ +F  M    R+ VSW+++
Sbjct: 54  NLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAI 113

Query: 431 IAAFARHGNGFKALELYEEM---KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           I+ FA +    +AL  +  M       + P +  F +LL +CS+      G+     + +
Sbjct: 114 ISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLK 173

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIE-ARSFIERMPVKPDVLVWQALL 534
                        ++DM  + GL I+ AR   ++M  K +++ W  ++
Sbjct: 174 TGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHK-NLVTWTLMI 220



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 11/117 (9%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS +A  G    G  +HA  +K+                 I N+L+S Y KC     A+
Sbjct: 454 LLSGAACIGTIVKGEQIHALIVKS----------GFGTNLCINNALISMYSKCGNKEAAL 503

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           ++F+DM  R+ ++W +++SGF ++G        F   LE+G  + ++ ++  +LSAC
Sbjct: 504 QVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGV-KPNEVTYIAVLSAC 559


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 354/607 (58%), Gaps = 14/607 (2%)

Query: 44  YVDISR-LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           Y D+ R LL   A+      G  +HA+ +K+  +P    N Y       + N+LLS Y K
Sbjct: 95  YSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP----NRY-------LENTLLSMYAK 143

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +A ++FD +  R+ VSW  M+  F+   +    +  ++ +++L   + D+ +F  
Sbjct: 144 CGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYE-TMKLAGCKPDKVTFVS 202

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L+A    EL  V + +H  +   G E E  VG +L+  Y KCG  S  + +F ++  +N
Sbjct: 203 LLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKN 262

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWT +I+G  Q    +  L+L  KM    + PN +TY S +  C+   AL  G+++H 
Sbjct: 263 VVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHR 322

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + +     ++ + +AL+ MY KCG +++A ++F      D V+ T ++ G+AQ GF +E
Sbjct: 323 YIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDE 382

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +M + GI+ D    ++ L        L  GK IH  ++ + ++ + ++ + L++
Sbjct: 383 AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVS 442

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG ++D+  VF++M+ RN V+W +MI   A+HG   +ALE +E+MK +G++P  VT
Sbjct: 443 MYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVT 502

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S+L AC+HVGLV +G +  +SM   + I P  EHY+C VD++GRAG L EA + I  M
Sbjct: 503 FTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTM 562

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P +P   VW ALL AC IH D E G+ AAE +    PD    Y+ ++NIY+ +GR+++  
Sbjct: 563 PFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAE 622

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  + M++  V KE G SWIE++ +VH F V+DK HP+A  I+  L +L   + ++GYVP
Sbjct: 623 KVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVP 682

Query: 642 NKRFILH 648
           + RF+LH
Sbjct: 683 DTRFVLH 689



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 155/312 (49%), Gaps = 14/312 (4%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S L +    +E L +   M L      S  +   +  C+ L++L +GR++H  + K  +
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           Q +  +E+ L+ MY+KCGS+ DA ++F+   + + VS T ++  F       EA + +  
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M  AG + D     ++L  F     L +G+++H  I K+     P V   L+ MY+KCGD
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGD 247

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +  +  +F ++  +N V+W  +IA +A+ G    ALEL E+M+   V P  +T+ S+L  
Sbjct: 248 ISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQG 307

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMP 522
           C+    +  G        +VHR   ++ +         ++ M  + G L EAR     +P
Sbjct: 308 CTTPLALEHG-------KKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP 360

Query: 523 VKPDVLVWQALL 534
            + DV+ W A++
Sbjct: 361 HR-DVVTWTAMV 371


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 324/558 (58%), Gaps = 2/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +LLS Y KC  M +A+++F+ +  R+ VSW  M++GF ++G  +  F FF + +E G
Sbjct: 343 VGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESG 402

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ +F  IL AC R       + IH  +   GY  +  V  AL++ Y KCGS    
Sbjct: 403 I-EPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDA 461

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  +  +NV+ W A+I+  VQ++ Y+  +  F  +    I P+S T+ S +  C   
Sbjct: 462 RNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSP 521

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+ +  ++ +   +SDL I +AL+ M+  CG +  A  +F    E D VS   I+
Sbjct: 522 DALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTII 581

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF Q+G  + A   F  M ++G++ D    + +L       +L  G+++H+LI ++   
Sbjct: 582 AGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALD 641

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V  GLI+MY+KCG ++D+  VF  +  +N  SW SMI  +A+HG G +ALEL+ +M
Sbjct: 642 CDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQM 701

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + EGV+P  +TF+  L AC+H GL+ +G+   +SM + + I PR EHY C+VD+ GRAGL
Sbjct: 702 QQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFN-IEPRMEHYGCMVDLFGRAGL 760

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FI +M VKPD  +W ALLGAC +H D E+ +  A+K     P+    Y++++NI
Sbjct: 761 LHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNI 820

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G WKE  K  K M + GV K+ G SWIE++ +VH F  DDK HPQ + IH  L  L
Sbjct: 821 YAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRL 880

Query: 631 LRLMIDEGYVPNKRFILH 648
              M   GYVP+ R++LH
Sbjct: 881 HMEMKKLGYVPDTRYVLH 898



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/507 (30%), Positives = 273/507 (53%), Gaps = 10/507 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ ++KC  + +A+K+F+++P RD ++W +M++G  R+ +F      F+   E G
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q D+ +F  +L AC+  E     K +H  +   G + E+ VG AL++ Y KCGS    
Sbjct: 302 V-QPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDA 360

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF  ++ RNV++WTA+I+G  Q+   EE    F KM    I PN +T++S + ACS  
Sbjct: 361 LEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRP 420

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL +GRQIH  + K    +D  + +AL+ MY+KCGS+ DA  +FE   + + V+   ++
Sbjct: 421 SALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMI 480

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+   + A+  F  ++K GI+ D +  +++L V     +L LGK + SLII++ F 
Sbjct: 481 TAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  + N L++M+  CGDL  ++ +F+ M  R+ VSWN++IA F +HG    A + ++ M
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMM 600

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  GV+P  +TF  LL+AC+    + +G      +TE   +         ++ M  + G 
Sbjct: 601 QESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA-ALDCDVVVGTGLISMYTKCGS 659

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMA 568
           + +A      +P K +V  W +++   + HG    GK A E     Q +   P     + 
Sbjct: 660 IDDAHLVFHNLP-KKNVYSWTSMITGYAQHG---RGKEALELFCQMQQEGVKPDWITFVG 715

Query: 569 NIYSC--SGRWKERAKAIKRMKEMGVD 593
            + +C  +G  KE     + MK+  ++
Sbjct: 716 ALSACAHAGLIKEGLHHFESMKDFNIE 742



 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 265/456 (58%), Gaps = 7/456 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +WN L+S Y KC    +A ++FD+MP +D  SWN ++ G++++  ++  F   ++ ++ G
Sbjct: 141 MWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG 200

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D+ +F  +L+AC  ++       +  L+   G++ ++ VG ALI  + KCG     
Sbjct: 201 V-KPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDA 259

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            KVF  +  R++ITWT++I+GL +++ +++   LF  M    + P+ + ++S + AC+  
Sbjct: 260 LKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +AL +G+++H  + ++ L +++ + +AL+ MY+KCGS+EDA ++F   +  + VS T ++
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            GFAQ+G  EEA   F KM+++GIE  PN V+  ++LG     ++L  G+QIH  IIK+ 
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIE--PNRVTFMSILGACSRPSALKQGRQIHDRIIKAG 437

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           + ++  V   L++MY+KCG L D+  VF R++ +N V+WN+MI A+ +H     A+  ++
Sbjct: 438 YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            +  EG++P   TF S+L+ C     +  G ++++S+               +V M    
Sbjct: 498 ALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNC 556

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G L+ A +    MP + D++ W  ++     HG+++
Sbjct: 557 GDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQ 591



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 226/410 (55%), Gaps = 4/410 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q+ + +++ +L  C + +     + IH  +     + ++ + N LI+ Y KCG+++S ++
Sbjct: 101 QIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQ 160

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM  ++V +W  ++ G VQ++ YEE  +L  +M    + P+  T++  + AC+  + 
Sbjct: 161 IFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKN 220

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           + +G ++  ++      +DL + +AL++M+ KCG V+DA ++F      D ++ T ++ G
Sbjct: 221 VDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITG 280

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            A++   ++A  LF  M + G++ D     ++L       +L  GK++H+ + +    + 
Sbjct: 281 LARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTE 340

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V   L++MY+KCG +ED+++VF+ +  RN VSW +MIA FA+HG   +A   + +M  
Sbjct: 341 IYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+EP  VTF+S+L ACS    + +G +    + +   I+      A ++ M  + G L+
Sbjct: 401 SGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLM 459

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDS 560
           +AR+  ER+  K +V+ W A++ A   H   D+ +  + A      +PDS
Sbjct: 460 DARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS 508



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 187/374 (50%), Gaps = 12/374 (3%)

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           ++N     A ++ L +     E + + + +    I  +  TY S +  C   + L +G +
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  +    +Q D+ + + L+ MY+KCG+   A QIF+   + D  S  ++L G+ Q+  
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            EEA +L  +MV+ G++ D      +L       ++  G ++ SLI+ + + ++ FV   
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTA 245

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LINM+ KCG ++D++KVF+ +  R+ ++W SMI   ARH    +A  L++ M+ EGV+P 
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPD 305

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARS 516
            V F+SLL AC+H   + +G      M EV       E Y    ++ M  + G + +A  
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEV---GLDTEIYVGTALLSMYTKCGSMEDALE 362

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
               +  + +V+ W A++   + HG  E       K+  +  + P     M+ + +CS  
Sbjct: 363 VFNLVKGR-NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE-PNRVTFMSILGACS-- 418

Query: 577 WKERAKAIKRMKEM 590
              R  A+K+ +++
Sbjct: 419 ---RPSALKQGRQI 429



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   L+S Y KC  + +A  +F ++P ++  SW +M++G+ ++G        F +  + 
Sbjct: 645 VVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQE 704

Query: 150 GFYQLDQASFTIILSACDRSEL 171
           G  + D  +F   LSAC  + L
Sbjct: 705 GV-KPDWITFVGALSACAHAGL 725


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 325/546 (59%), Gaps = 5/546 (0%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K+F+ MP R+ V+W  M++  ++ G        F   +  G Y+ D+ + + ++SAC
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSG-YEPDRFTLSGVISAC 281

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVI 223
              EL L+ + +H      G   +  VG  LI  Y KC   GS  + RK+F ++   NV 
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 224 TWTAVISGLVQNQLY-EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +WTA+I+G VQ   Y EE L LF  M L  + PN  T+ S++ AC+ L AL  G Q+   
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             KL   S  C+ ++L+ MY++ G ++DA + F+   E + +S   ++  +A+N   EEA
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEA 461

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++LF ++   G+       +++L       ++G G+QIH+ +IKS    N  V N LI+M
Sbjct: 462 LELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISM 521

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YS+CG++E + +VF  M  RN +SW S+I  FA+HG   +ALEL+ +M  EGV P +VT+
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTY 581

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSHVGLVN+G +  KSM   H + PR EHYAC+VD++GR+G L EA  FI  MP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMP 641

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            K D LVW+  LGAC +HG+ E+GK+AA+ +   +P  PA YIL++N+Y+   +W E + 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSN 701

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MKE  + KE G SW+E+E +VH F V D  HP+A  I+  L  L   +   GYVPN
Sbjct: 702 IRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPN 761

Query: 643 KRFILH 648
             F+LH
Sbjct: 762 LDFVLH 767



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 158/519 (30%), Positives = 257/519 (49%), Gaps = 24/519 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFG---FFK 144
           +V  NSL+S Y KC Q   A  +F  M   RD +SW+ MVS F  N   +MGF     F 
Sbjct: 101 SVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANN---NMGFRALLTFV 157

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFK 203
             +E G+Y  ++  F     AC  +E   V   I   V   GY + +V VG  LI  + K
Sbjct: 158 DMIENGYYP-NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK 216

Query: 204 C-GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
             G   S  KVF +M  RN +TWT +I+ L+Q     E + LF+ M      P+  T   
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAE 319
            + AC+ ++ L  G+Q+H    +  L  D C+   L++MY+KC   GS+  A +IF+   
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 320 ELDGVSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           + +  S T ++ G+ Q  G++EEA+ LF  M+   +  +    S+ L       +L +G+
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+ +  +K  F+S   V N LI+MY++ G ++D+ K F  +  +N +S+N++I A+A++ 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           N  +ALEL+ E++ +G+  +  TF SLL   + +G + KG +       V +   +    
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI---HARVIKSGLKLNQS 513

Query: 499 AC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
            C  ++ M  R G +  A    E M  + +V+ W +++   + HG +        K+ L 
Sbjct: 514 VCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKHGFATQALELFHKM-LE 571

Query: 557 QPDSPAPYILMANIYSCS--GRWKERAKAIKRM-KEMGV 592
           +   P     +A + +CS  G   E  K  K M  E GV
Sbjct: 572 EGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGV 610



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 13/308 (4%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           +P+  TY   +  C   ++   G  +H  L +  LQ D    ++L+ +YSKCG  E A  
Sbjct: 63  HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATS 122

Query: 314 IFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           IF       D +S + ++  FA N     A+  FV M++ G   +    +A         
Sbjct: 123 IFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAE 182

Query: 373 SLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSM 430
            + +G  I   +IK+ +  S+  V  GLI+M+ K  GDL  + KVF +M  RN+V+W  M
Sbjct: 183 FVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLM 242

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I    + G   +A++L+ +M   G EP   T   ++ AC+++ L+  G + L S    H 
Sbjct: 243 ITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQ-LHSQAIRHG 301

Query: 491 ISPRAEHYACVVDMVGRA---GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
           ++       C+++M  +    G +  AR   +++ +  +V  W A+     I G  + G 
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAM-----ITGYVQKGG 355

Query: 548 YAAEKLFL 555
           Y  E L L
Sbjct: 356 YDEEALDL 363



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 3/211 (1%)

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           +T  L+    NG   +A+     MV  G   D    S  L       S  +G  +H  + 
Sbjct: 34  LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLT 93

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKAL 444
           +SD   +    N LI++YSKCG  E +  +F  M + R+ +SW++M++ FA +  GF+AL
Sbjct: 94  QSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRAL 153

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + +M   G  P +  F +   ACS    V+ G      + +   +         ++DM
Sbjct: 154 LTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDM 213

Query: 505 -VGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            V   G L+ A    E+MP + + + W  ++
Sbjct: 214 FVKGRGDLVSAFKVFEKMPER-NAVTWTLMI 243


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/546 (39%), Positives = 325/546 (59%), Gaps = 5/546 (0%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K+F+ MP R+ V+W  M++  ++ G        F   + L  Y+ D+ + + ++SAC
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMI-LSGYEPDRFTLSGVISAC 281

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSSGRKVFGEMRVRNVI 223
              EL L+ + +H      G   +  VG  LI  Y KC   GS  + RK+F ++   NV 
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 224 TWTAVISGLVQNQLY-EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +WTA+I+G VQ   Y EE L LF  M L  + PN  T+ S++ AC+ L AL  G Q+   
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             KL   S  C+ ++L+ MY++ G ++DA + F+   E + +S   ++  +A+N   EEA
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEA 461

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++LF ++   G+       +++L       ++G G+QIH+ +IKS    N  V N LI+M
Sbjct: 462 LELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISM 521

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YS+CG++E + +VF  M  RN +SW S+I  FA+HG   +ALEL+ +M  EGV P  VT+
Sbjct: 522 YSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTY 581

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSHVGLVN+G +  KSM   H + PR EHYAC+VD++GR+G L EA  FI  MP
Sbjct: 582 IAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMP 641

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            K D LVW+  LGAC +HG+ E+GK+AA+ +   +P  PA YIL++N+Y+ + +W E + 
Sbjct: 642 YKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSN 701

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MKE  + KE G SW+E+E +VH F V D  HP+A  I+  L  L   +   GYVPN
Sbjct: 702 IRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPN 761

Query: 643 KRFILH 648
             F+LH
Sbjct: 762 LDFVLH 767



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 239/465 (51%), Gaps = 20/465 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFG---FFK 144
           +V  NSL+S Y KC Q   A  +F  M   RD +SW+ MVS F  N   +MGF     F 
Sbjct: 101 SVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANN---NMGFRALLTFV 157

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFK 203
             +E G+Y  ++  F     AC  +E   V   I   V   GY + +V VG  LI  + K
Sbjct: 158 DMIENGYYP-NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 216

Query: 204 C-GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
             G   S  KVF +M  RN +TWT +I+ L+Q     E + LF++M L    P+  T   
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSG 276

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAE 319
            + AC+ ++ L  G+Q+H    +  L  D C+   L++MY+KC   GS+  A +IF+   
Sbjct: 277 VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQIL 336

Query: 320 ELDGVSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           + +  S T ++ G+ Q  G++EEA+ LF  M+   +  +    S+ L       +L +G+
Sbjct: 337 DHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+ +  +K  F+S   V N LI+MY++ G ++D+ K F  +  +N +S+N++I A+A++ 
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNL 456

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           N  +ALEL+ E++ +G+  +  TF SLL   + +G + KG +       V +   +    
Sbjct: 457 NSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQI---HARVIKSGLKLNQS 513

Query: 499 AC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            C  ++ M  R G +  A    E M  + +V+ W +++   + HG
Sbjct: 514 VCNALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIITGFAKHG 557



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 146/308 (47%), Gaps = 13/308 (4%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           +P+  TY   +  C   ++   G  +H  L +  LQ D    ++L+ +YSKCG  E A  
Sbjct: 63  HPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATS 122

Query: 314 IFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           IF+      D +S + ++  FA N     A+  FV M++ G   +    +A         
Sbjct: 123 IFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAE 182

Query: 373 SLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSM 430
            + +G  I   ++K+ +  S+  V  GLI+M+ K  GDL  + KVF +M  RN+V+W  M
Sbjct: 183 FVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLM 242

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I    + G   +A++L+ EM L G EP   T   ++ AC+++ L+  G + L S    H 
Sbjct: 243 ITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQ-LHSQAIRHG 301

Query: 491 ISPRAEHYACVVDMVGRA---GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
           ++       C+++M  +    G +  AR   +++ +  +V  W A+     I G  + G 
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQI-LDHNVFSWTAM-----ITGYVQKGG 355

Query: 548 YAAEKLFL 555
           Y  E L L
Sbjct: 356 YDEEALDL 363



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 3/211 (1%)

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           +T  L+    NG   +A+     MV  G   D    S  L       S  +G  +H  + 
Sbjct: 34  LTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLT 93

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKAL 444
           +SD   +    N LI++YSKCG  E +  +F  M + R+ +SW++M++ FA +  GF+AL
Sbjct: 94  QSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRAL 153

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + +M   G  P +  F +   ACS    V+ G      + +   +         ++DM
Sbjct: 154 LTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDM 213

Query: 505 -VGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            V   G L+ A    E+MP + + + W  ++
Sbjct: 214 FVKGRGDLVSAFKVFEKMPER-NAVTWTLMI 243



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 13/129 (10%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LLS +A  G    G  +HA  IK+     NQ+V          N+L+S Y +C  + +
Sbjct: 481 ASLLSGAASIGTIGKGEQIHARVIKSGLKL-NQSV---------CNALISMYSRCGNIES 530

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++F+DM  R+ +SW ++++GF ++G        F + LE G  + +  ++  +LSAC 
Sbjct: 531 AFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV-RPNLVTYIAVLSAC- 588

Query: 168 RSELSLVSK 176
            S + LV++
Sbjct: 589 -SHVGLVNE 596


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 331/560 (59%), Gaps = 1/560 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T +  +L+  Y KC   ++  ++F+ +  RD ++WNTM+ G    G ++     + +   
Sbjct: 262 TAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQR 321

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    ++ ++ I+L+AC  S      K IH  V   G+  ++ V NALI+ Y +CGS  
Sbjct: 322 EGVMP-NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIK 380

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R VF +M  ++VI+WTA+I GL ++    E L ++ +M    + PN +TY S + ACS
Sbjct: 381 DARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS 440

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              AL  GR+IH  + +  L +D  + + L++MYS CGSV+DA Q+F+   + D V+   
Sbjct: 441 SPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNA 500

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+A +   +EA++LF ++ + G++ D      +L       SL   ++IH+L+ K  
Sbjct: 501 MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S+  V N L++ Y+KCG   D+  VF +M  RN +SWN++I   A+HG G  AL+L+E
Sbjct: 561 FFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFE 620

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK+EGV+P  VTF+SLL ACSH GL+ +G  +  SM++   I P  EHY C+VD++GRA
Sbjct: 621 RMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRA 680

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA + I+ MP + +  +W ALLGAC IHG+  + + AAE       D+   Y+ ++
Sbjct: 681 GQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALS 740

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +G W   AK  K M++ GV KE G SWI++  ++H FV +D+ HPQ++ I+  L 
Sbjct: 741 HMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELD 800

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   M  +GYVP+ R ++H
Sbjct: 801 RLTHAMKMKGYVPDTRSVMH 820



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 255/458 (55%), Gaps = 15/458 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L+ Y KC  +  A ++FD M  +  VSW   + G+   G  +  F  F++  + G  
Sbjct: 165 NCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV 224

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ ++  +L+A          K +H  +   G+E +  VG AL+  Y KCGS    R+
Sbjct: 225 P-NRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQ 283

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  R++I W  +I GL +   +EE  +++ +M    + PN +TY+  + AC    A
Sbjct: 284 VFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAA 343

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G++IH  + K    SD+ +++AL+ MYS+CGS++DA  +F+     D +S T ++ G
Sbjct: 344 LHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGG 403

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            A++GF  EA+ ++ +M +AG+E +    +++L       +L  G++IH  ++++   ++
Sbjct: 404 LAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATD 463

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L+NMYS CG ++D+ +VF RM  R+ V++N+MI  +A H  G +AL+L++ ++ 
Sbjct: 464 AHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE 523

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVG 506
           EG++P  VT++++L+AC++ G     +E+ +   E+H +  +   ++       +V    
Sbjct: 524 EGLKPDKVTYINMLNACANSG----SLEWAR---EIHTLVRKGGFFSDTSVGNALVSTYA 576

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + G   +A    E+M  K +V+ W A++G  + HG  +
Sbjct: 577 KCGSFSDASIVFEKM-TKRNVISWNAIIGGSAQHGRGQ 613



 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 161/537 (29%), Positives = 273/537 (50%), Gaps = 19/537 (3%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTV-SWNTMVSGFLRNGEFDMGFG 141
            VP+   + N+L++ Y++C  +  A +++  +  M  TV SWN MV G+++ G  +    
Sbjct: 54  TVPDQYTV-NALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALK 112

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
             ++  + G    D+ +    LS+C         + IH      G   +V V N ++  Y
Sbjct: 113 LLRQMQQHGLAP-DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMY 171

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCGS    R+VF +M  ++V++WT  I G       E   ++F KM    + PN +TY+
Sbjct: 172 AKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYI 231

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + A S   AL  G+ +H  +     +SD  + +AL+ MY+KCGS +D  Q+FE     
Sbjct: 232 SVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR 291

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQ 379
           D ++   ++ G A+ G+ EEA +++ +M + G+   PN ++ V+ +     S  L  GK+
Sbjct: 292 DLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM--PNKITYVILLNACVNSAALHWGKE 349

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IHS + K+ FTS+  V N LI+MYS+CG ++D+  VF +M  ++ +SW +MI   A+ G 
Sbjct: 350 IHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGF 409

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G +AL +Y+EM+  GVEP  VT+ S+L+ACS    +  G    + + E   ++  A    
Sbjct: 410 GAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAG-LATDAHVGN 468

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +V+M    G + +AR   +RM ++ D++ + A++G  + H    +GK A +     Q +
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAH---NLGKEALKLFDRLQEE 524

Query: 560 SPAP----YILMANIYSCSG--RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
              P    YI M N  + SG   W      + R      D   G + +    +  SF
Sbjct: 525 GLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSF 581



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/410 (30%), Positives = 219/410 (53%), Gaps = 16/410 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           Q++ + +  +L  C   +  +  + +H  ++      ++ TV NALI  Y +CGS    R
Sbjct: 20  QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTV-NALINMYIQCGSIEEAR 78

Query: 212 KVFGEMRV--RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           +V+ ++    R V +W A++ G +Q    E+ LKL  +M    + P+  T +S + +C  
Sbjct: 79  QVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKS 138

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             AL  GR+IH    +  L  D+ + + +++MY+KCGS+E+A ++F+  E+   VS T+ 
Sbjct: 139 PGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTIT 198

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           + G+A  G  E A ++F KM + G+   PN ++  +VL  F    +L  GK +HS I+ +
Sbjct: 199 IGGYADCGRSETAFEIFQKMEQEGVV--PNRITYISVLNAFSSPAALKWGKAVHSRILNA 256

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              S+  V   L+ MY+KCG  +D  +VF ++  R+ ++WN+MI   A  G   +A E+Y
Sbjct: 257 GHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVY 316

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M+ EGV P  +T++ LL+AC +   ++ G E    + +    S      A ++ M  R
Sbjct: 317 NQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNA-LISMYSR 375

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
            G + +AR   ++M V+ DV+ W A++G  +  G      + AE L + Q
Sbjct: 376 CGSIKDARLVFDKM-VRKDVISWTAMIGGLAKSG------FGAEALTVYQ 418


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/604 (34%), Positives = 346/604 (57%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LL+  A  G    G  LH+  +K    FD           +   SLL  Y+KC  
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD----------YITEGSLLDLYVKCGD 295

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A  +F+     + V WN M+  + +  +    F  F +    G +  +Q ++  IL 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP-NQFTYPCILR 354

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     RK+   +  R+V++
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVS 414

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ+   EE L  F +M    + P+++   S+  AC+G++A+ +G QIH  ++
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +D+ I + L+++Y++CG  E+A+ +F   E  D ++   ++ GF Q+   ++A+ 
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALM 534

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F+KM +AG + +     + +        +  GKQ+H   +K+  TS   V N LI++Y 
Sbjct: 535 VFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+  +FS M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIG 654

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM+ V+ ++P  +HYACVVD++GRAG L  AR F++ MP+ 
Sbjct: 655 VLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT 714

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            + ++W+ LL AC +H + E+G+ AA+ L   +P   A Y+L++N Y+ +G+W  R +  
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVR 774

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MK+ G+ KE G SWIE++  VH+F V D++HP +D I+  L+EL   +   GY     
Sbjct: 775 KMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENP 834

Query: 645 FILH 648
            + H
Sbjct: 835 NLFH 838



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 242/477 (50%), Gaps = 11/477 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           +I N L+  Y K   +  A ++F ++  RD VSW  M+SG+ ++G   +G   F+   ++
Sbjct: 79  LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG---LGKEAFRLYSQM 135

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            +  +    + +  +LSAC + +L    +MIH  VY   +  E  VGNALI  Y   GS 
Sbjct: 136 HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSF 195

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               +VF +M   + +T+  +ISG  Q    E  L++F +M L  + P+ +T  S + AC
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + +  L +G+Q+H  L K  +  D   E +L+D+Y KCG +E A  IF   +  + V   
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           ++LV + Q     ++ ++F +M   GI  +      +L        + LG+QIHSL IK+
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F S+ +V+  LI+MYSK G L+ + K+   +  R+ VSW SMIA + +H    +AL  +
Sbjct: 376 GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +EM+  GV P ++   S   AC+ +  + +G++ + +   V   +     +  +V++  R
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYAR 494

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
            G   EA S    +  K D + W  L+   S  G S + K A   +F+    + A Y
Sbjct: 495 CGRSEEAFSLFREIEHK-DEITWNGLI---SGFGQSRLYKQAL-MVFMKMGQAGAKY 546



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 237/496 (47%), Gaps = 15/496 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS   K   F  G  +HA   K  + F ++        T + N+L++ YL     +
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYK--QAFCSE--------TFVGNALIALYLGFGSFK 196

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F DM   D V++NT++SG  + G  +     F   ++L   + D  +   +L+AC
Sbjct: 197 LAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDE-MQLSGLRPDCVTVASLLAAC 255

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                    K +H  +   G   +     +L+  Y KCG   +   +F      NV+ W 
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++    Q     +  ++F +M    I+PN  TY   +  C+    +  G QIH +  K 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +SD+ +   L+DMYSK G ++ A +I E  E+ D VS T ++ G+ Q+ F EEA+  F
Sbjct: 376 GFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 347 VKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +M   G+  D   + SA     G+  ++  G QIH+ +  S + ++  + N L+N+Y++
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGI-KAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR 494

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG  E++  +F  +  ++ ++WN +I+ F +     +AL ++ +M   G +    TF+S 
Sbjct: 495 CGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISA 554

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + A +++  + +G +      +    S   E    ++ + G+ G + +A+     M ++ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 526 DVLVWQALLGACSIHG 541
           +V  W  ++ +CS HG
Sbjct: 614 EV-SWNTIITSCSQHG 628



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 193/388 (49%), Gaps = 3/388 (0%)

Query: 154 LDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           L  A  T  L AC  R     +   IH    + G   +  +GN LI  Y K G     R+
Sbjct: 40  LGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQ 99

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  R+ ++W A++SG  Q+ L +E  +L+ +MH   + P      S + AC+  + 
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKL 159

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             +GR IH  ++K A  S+  + +AL+ +Y   GS + A ++F      D V+   ++ G
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ G  E A+Q+F +M  +G+  D   V+++L        L  GKQ+HS ++K+  + +
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD 279

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                 L+++Y KCGD+E +  +F+     N V WN M+ A+ +  +  K+ E++ +M+ 
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+ P   T+  +L  C+  G +  G E + S++  +           ++DM  + G L 
Sbjct: 340 TGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIH 540
           +AR  +E M  K DV+ W +++     H
Sbjct: 399 KARKILE-MLEKRDVVSWTSMIAGYVQH 425


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/556 (41%), Positives = 333/556 (59%), Gaps = 11/556 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKRSL 147
           + +SLL+ Y K   + +A KLFD MP R+TVSW TM+SG+  +   D     F   +R  
Sbjct: 155 VGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREE 214

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           E+     ++ + T +LSA          + +H L    G    V+V NAL+T Y KCGS 
Sbjct: 215 EIQ----NEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSL 270

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               + F     +N ITW+A+++G  Q    ++ LKLF KMH   + P+  T +  + AC
Sbjct: 271 DDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINAC 330

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L A+ EG+Q+H   +KL     L + SA++DMY+KCGS+ DA + FE  ++ D V  T
Sbjct: 331 SDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWT 390

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            I+ G+ QNG  E  + L+ KM    +  +   +++VL       +L  GKQ+H+ IIK 
Sbjct: 391 SIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKY 450

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F     + + L  MY+KCG L+D   +F RM  R+ +SWN+MI+  +++G+G KALEL+
Sbjct: 451 GFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELF 510

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           E+M LEG++P  VTF++LL ACSH+GLV++G E+ K M +   I+P  EHYAC+VD++ R
Sbjct: 511 EKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSR 570

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYIL 566
           AG L EA+ FIE   V   + +W+ LLGAC  H + E+G YA EKL  L  P+S A Y+L
Sbjct: 571 AGKLNEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSA-YVL 629

Query: 567 MANIYSCSGRWKERAKAIKR-MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           +++IY+  G  +E  + ++R MK  GV+KE G SWIE++  VH FVV D  HPQ D I  
Sbjct: 630 LSSIYTALGD-RENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRL 688

Query: 626 VLAELLRLMIDEGYVP 641
            L  L +LMIDEGY P
Sbjct: 689 ELELLTKLMIDEGYQP 704



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/517 (26%), Positives = 251/517 (48%), Gaps = 18/517 (3%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM--RDT 120
           G +LHA  +KT             ++  + N+ L+ Y K + + +A+ LFD +    +D 
Sbjct: 30  GRTLHARILKT----------GSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDD 79

Query: 121 VSWNTMVSGFLRN---GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           VSWN++++ F +N            F+R +       +  +   + SA       +  K 
Sbjct: 80  VSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQ 139

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
            H +    G   +V VG++L+  Y K G     RK+F  M  RN ++W  +ISG   + +
Sbjct: 140 AHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDI 199

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            ++ +++F  M       N     S + A +    +  GRQ+H +  K  L + + + +A
Sbjct: 200 ADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANA 259

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+ MY+KCGS++DA + FEF+ + + ++ + ++ G+AQ G  ++A++LF KM  +G+   
Sbjct: 260 LVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPS 319

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              +  V+       ++  GKQ+HS   K  F    +V + +++MY+KCG L D+ K F 
Sbjct: 320 EFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFE 379

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +   + V W S+I  + ++G+    L LY +M++E V P ++T  S+L ACS +  +++
Sbjct: 380 CVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQ 439

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G +    + + +         + +  M  + G L +      RMP + DV+ W A++   
Sbjct: 440 GKQMHARIIK-YGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSR-DVISWNAMISGL 497

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           S +G         EK+ L +   P P   +  + +CS
Sbjct: 498 SQNGHGNKALELFEKMLL-EGIKPDPVTFVNLLSACS 533



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 33/338 (9%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P     L  ++ C+  + + +GR +H  + K    S + + +  +++Y+K   +  A  +
Sbjct: 9   PQHRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTL 68

Query: 315 FEFA--EELDGVSMTVILVGFAQNGFEEE---AMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           F+     + D VS   ++  F+QN        A+ LF +M++A   + PN    + GVF 
Sbjct: 69  FDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRAN-NVIPN-AHTLAGVFS 126

Query: 370 VDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             ++L     GKQ HS+ +K+  + + +V + L+NMY K G + D+ K+F RM  RN+VS
Sbjct: 127 AASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVS 186

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           W +MI+ +A      KA+E++E M+ E     +    S+L A +    V  G        
Sbjct: 187 WATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTG-------R 239

Query: 487 EVHRISPRAEHYACV------VDMVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSI 539
           +VH ++ +    A V      V M  + G L +A R+F        + + W A++   + 
Sbjct: 240 QVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTF--EFSGDKNSITWSAMVTGYAQ 297

Query: 540 HGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
            GDS+     A KLF     S   P+ + L+  I +CS
Sbjct: 298 GGDSD----KALKLFNKMHSSGVLPSEFTLVGVINACS 331


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 349/598 (58%), Gaps = 11/598 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           + ++ LLS  A  G  H G  LH+  IK     D           ++  SLL  Y KC  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSAD----------IILEGSLLDLYSKCAD 412

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A K F      + V WN M+  + +       F  F R +++     +Q ++  IL 
Sbjct: 413 VETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIF-RQMQMEGMIPNQFTYPSILR 471

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C       + + IH  V   G++  V V + LI  Y K G  +   ++   +   +V++
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS 531

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+I+G VQ+ ++ E L+LF +M    I  +++ + S++ AC+G++AL +G+QIH   +
Sbjct: 532 WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY 591

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +DL I +AL+ +Y++CG +++A+  FE   + + +S   ++ G AQ+G+ EEA+Q
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQ 651

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +FV+M++   E++     + +       ++  G+QIHS+++K+ + S   V+N LI++Y+
Sbjct: 652 VFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYA 711

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K G + D+ + F+ M+ RN +SWN+MI  +++HG G +AL L+EEMK+ G+ P  VTF+ 
Sbjct: 712 KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVG 771

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSH+GLV +G+++ +SM ++H + P++EHY CVVD++GRAG L  A  +I+ MP+ 
Sbjct: 772 VLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP 831

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D ++W+ LL AC IH + E+G+ AA  L   +P+  A Y+L++NIY+ S +W  R  + 
Sbjct: 832 ADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSR 891

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           K MK+ GV KE G SWIE++  VH+F   DK+HP  + I+  +  L R   + GYV +
Sbjct: 892 KLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD 949



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 226/451 (50%), Gaps = 8/451 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  Y +      AVK+FD+   R   SWN M+  F+        F  F+R L  G  
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 153 QLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
             +  +F  +L AC   +++    K +H   +  G++    V N LI  Y K G   S +
Sbjct: 157 P-NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           KVF  + +++++TW A+ISGL QN L EE + LF  MH   I P      S + A + +Q
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G Q+H ++ K    S+  + + L+ +YS+   +  A +IF      DGVS   ++ 
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  Q GF + A++LF KM +  ++ D   V+++L       +L  G Q+HS  IK+  ++
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  +   L+++YSKC D+E + K F      N V WN M+ A+ +  N   + E++ +M+
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAG 509
           +EG+ P   T+ S+L  C+ +G +  G +     T V +   +   Y C  ++DM  + G
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQI---HTHVIKTGFQLNVYVCSVLIDMYAKYG 512

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            L  A   + R+P + DV+ W A++     H
Sbjct: 513 QLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 243/467 (52%), Gaps = 19/467 (4%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   ++ ++ N L+  Y K   + +A K+F+ + M+D V+W  M+SG  +NG  +     
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 143 FKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
           F    ++   ++    + +  +LSA  + +L  + + +HCLV   G+  E  V N L+  
Sbjct: 249 F---CDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y +     S  ++F  M  R+ +++ ++ISGLVQ    +  L+LF KM    + P+ +T 
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            S + AC+ + AL +G Q+H    K  + +D+ +E +L+D+YSKC  VE A + F   E 
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTET 425

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            + V   V+LV + Q     ++ ++F +M   G+  +     ++L       +L LG+QI
Sbjct: 426 ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ +IK+ F  N +V + LI+MY+K G L  ++++  R+   + VSW +MIA + +H   
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA- 499
            +AL+L+EEM+  G++  ++ F S + AC+       G+  L+   ++H  S  A   A 
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACA-------GIRALRQGQQIHAQSYAAGFGAD 598

Query: 500 -----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                 ++ +  R G + EA    E++  K ++  W +L+   +  G
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNI-SWNSLVSGLAQSG 644



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 240/496 (48%), Gaps = 15/496 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS S K   F LG  LH   IK          +   + T + N L++ Y +  ++ 
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIK----------WGFHSETYVCNGLVALYSRSRKLI 313

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A ++F  M  RD VS+N+++SG ++ G  D     F + ++    + D  +   +LSAC
Sbjct: 314 SAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK-MQRDCLKPDCITVASLLSAC 372

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                      +H      G   ++ +  +L+  Y KC    +  K F      N++ W 
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWN 432

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++    Q     +  ++F +M +  + PN  TY S +  C+ L AL  G QIH  + K 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             Q ++ + S L+DMY+K G +  A +I     E D VS T ++ G+ Q+    EA+QLF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 347 VKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +M   GI+ D     SA+    G+  +L  G+QIH+    + F ++  +NN LI++Y++
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLSINNALISLYAR 611

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG ++++   F ++  +N++SWNS+++  A+ G   +AL+++  M     E    T+ S 
Sbjct: 612 CGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + A + +  + +G + + SM          E    ++ +  ++G + +A      M  + 
Sbjct: 672 ISAAASLANIKQGQQ-IHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSER- 729

Query: 526 DVLVWQALLGACSIHG 541
           +V+ W A++   S HG
Sbjct: 730 NVISWNAMITGYSQHG 745



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 1/321 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L  C  S     +  +HC +   G++ E  + ++L+ +YF+ G      KVF E   R+
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIH 280
           V +W  +I   V  +   +   LF +M    I PN  T+   + AC G   A    +Q+H
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
              +     S   + + L+D+YSK G +E A ++F      D V+   ++ G +QNG EE
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA+ LF  M  + I   P ++S+VL          LG+Q+H L+IK  F S  +V NGL+
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            +YS+   L  + ++FS M  R+ VS+NS+I+   + G   +ALEL+ +M+ + ++P  +
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 461 TFLSLLHACSHVGLVNKGMEF 481
           T  SLL AC+ VG ++KGM+ 
Sbjct: 364 TVASLLSACASVGALHKGMQL 384



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 6/278 (2%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           +  N   YL  +  C    +L E  ++H  + K     +  +  +L+D Y + G    A 
Sbjct: 54  VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAV 113

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVD 371
           ++F+        S   ++  F       +   LF +M+  GI  +    + VL    G D
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +    KQ+HS      F S+P V N LI++YSK G +E + KVF+ +  ++ V+W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           +  +++G   +A+ L+ +M    + PT     S+L A + + L   G E L  +  V + 
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG-EQLHCL--VIKW 290

Query: 492 SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDV 527
              +E Y C  +V +  R+  LI A      M  +  V
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 30/253 (11%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           ++H  I KS F   P + + L++ Y + GD   ++KVF   + R+  SWN MI  F    
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           + F+   L+  M  EG+ P   TF  +L AC    +    ++ + S T  +         
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
             ++D+  + G +  A+     + +K D++ W A++   S +G  E     A  LF    
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMK-DIVTWVAMISGLSQNGLEE----EAILLFCDMH 253

Query: 559 DS---PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
            S   P PY+L +++ S S                     T I   E+ +Q+H  V+   
Sbjct: 254 ASEIFPTPYVL-SSVLSAS---------------------TKIQLFELGEQLHCLVIKWG 291

Query: 616 MHPQADTIHGVLA 628
            H +    +G++A
Sbjct: 292 FHSETYVCNGLVA 304


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 349/598 (58%), Gaps = 11/598 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           + ++ LLS  A  G  H G  LH+  IK     D           ++  SLL  Y KC  
Sbjct: 363 ITVASLLSACASVGALHKGMQLHSHAIKAGMSAD----------IILEGSLLDLYSKCAD 412

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A K F      + V WN M+  + +       F  F R +++     +Q ++  IL 
Sbjct: 413 VETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIF-RQMQMEGMIPNQFTYPSILR 471

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C       + + IH  V   G++  V V + LI  Y K G  +   ++   +   +V++
Sbjct: 472 TCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVS 531

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+I+G VQ+ ++ E L+LF +M    I  +++ + S++ AC+G++AL +G+QIH   +
Sbjct: 532 WTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSY 591

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +DL I +AL+ +Y++CG +++A+  FE   + + +S   ++ G AQ+G+ EEA+Q
Sbjct: 592 AAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQ 651

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +FV+M++   E++     + +       ++  G+QIHS+++K+ + S   V+N LI++Y+
Sbjct: 652 VFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYA 711

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K G + D+ + F+ M+ RN +SWN+MI  +++HG G +AL L+EEMK+ G+ P  VTF+ 
Sbjct: 712 KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVG 771

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSH+GLV +G+++ +SM ++H + P++EHY CVVD++GRAG L  A  +I+ MP+ 
Sbjct: 772 VLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP 831

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D ++W+ LL AC IH + E+G+ AA  L   +P+  A Y+L++NIY+ S +W  R  + 
Sbjct: 832 ADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSR 891

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           K MK+ GV KE G SWIE++  VH+F   DK+HP  + I+  +  L R   + GYV +
Sbjct: 892 KLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQD 949



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 226/451 (50%), Gaps = 8/451 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  Y +      AVK+FD+   R   SWN M+  F+        F  F+R L  G  
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 153 QLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
             +  +F  +L AC   +++    K +H   +  G++    V N LI  Y K G   S +
Sbjct: 157 P-NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAK 215

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           KVF  + +++++TW A+ISGL QN L EE + LF  MH   I P      S + A + +Q
Sbjct: 216 KVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQ 275

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G Q+H ++ K    S+  + + L+ +YS+   +  A +IF      DGVS   ++ 
Sbjct: 276 LFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  Q GF + A++LF KM +  ++ D   V+++L       +L  G Q+HS  IK+  ++
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSA 395

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  +   L+++YSKC D+E + K F      N V WN M+ A+ +  N   + E++ +M+
Sbjct: 396 DIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAG 509
           +EG+ P   T+ S+L  C+ +G +  G +     T V +   +   Y C  ++DM  + G
Sbjct: 456 MEGMIPNQFTYPSILRTCTSLGALYLGEQI---HTHVIKTGFQLNVYVCSVLIDMYAKYG 512

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            L  A   + R+P + DV+ W A++     H
Sbjct: 513 QLALALRILRRLP-EDDVVSWTAMIAGYVQH 542



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 243/467 (52%), Gaps = 19/467 (4%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   ++ ++ N L+  Y K   + +A K+F+ + M+D V+W  M+SG  +NG  +     
Sbjct: 189 YGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILL 248

Query: 143 FKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
           F    ++   ++    + +  +LSA  + +L  + + +HCLV   G+  E  V N L+  
Sbjct: 249 F---CDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVAL 305

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y +     S  ++F  M  R+ +++ ++ISGLVQ    +  L+LF KM    + P+ +T 
Sbjct: 306 YSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITV 365

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            S + AC+ + AL +G Q+H    K  + +D+ +E +L+D+YSKC  VE A + F   E 
Sbjct: 366 ASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTET 425

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            + V   V+LV + Q     ++ ++F +M   G+  +     ++L       +L LG+QI
Sbjct: 426 ENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQI 485

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ +IK+ F  N +V + LI+MY+K G L  ++++  R+   + VSW +MIA + +H   
Sbjct: 486 HTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMF 545

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA- 499
            +AL+L+EEM+  G++  ++ F S + AC+       G+  L+   ++H  S  A   A 
Sbjct: 546 SEALQLFEEMEYRGIQFDNIGFASAISACA-------GIRALRQGQQIHAQSYAAGFGAD 598

Query: 500 -----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                 ++ +  R G + EA    E++  K ++  W +L+   +  G
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIGDKNNI-SWNSLVSGLAQSG 644



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 131/496 (26%), Positives = 241/496 (48%), Gaps = 15/496 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS S K   F LG  LH   IK          +   + T + N L++ Y +  ++ 
Sbjct: 264 LSSVLSASTKIQLFELGEQLHCLVIK----------WGFHSETYVCNGLVALYSRSRKLI 313

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A ++F  M  RD VS+N+++SG ++ G  D     F + ++    + D  +   +LSAC
Sbjct: 314 SAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTK-MQRDCLKPDCITVASLLSAC 372

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                      +H      G   ++ +  +L+  Y KC    +  K F      N++ W 
Sbjct: 373 ASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWN 432

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++    Q     +  ++F +M +  + PN  TY S +  C+ L AL  G QIH  + K 
Sbjct: 433 VMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT 492

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             Q ++ + S L+DMY+K G +  A +I     E D VS T ++ G+ Q+    EA+QLF
Sbjct: 493 GFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLF 552

Query: 347 VKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +M   GI+ D     SA+    G+  +L  G+QIH+    + F ++  +NN LI++Y++
Sbjct: 553 EEMEYRGIQFDNIGFASAISACAGI-RALRQGQQIHAQSYAAGFGADLSINNALISLYAR 611

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG ++++   F ++  +N++SWNS+++  A+ G   +AL+++  M     E    T+ S 
Sbjct: 612 CGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSA 671

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + A + +  + +G +    + +    S R E    ++ +  ++G + +A      M  + 
Sbjct: 672 ISAAASLANIKQGQQIHSMVLKTGYDSER-EVSNSLISLYAKSGSISDAWREFNDMSER- 729

Query: 526 DVLVWQALLGACSIHG 541
           +V+ W A++   S HG
Sbjct: 730 NVISWNAMITGYSQHG 745



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 170/321 (52%), Gaps = 1/321 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L  C  S     +  +HC +   G++ E  + ++L+ +YF+ G      KVF E   R+
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRS 123

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIH 280
           V +W  +I   V  +   +   LF +M    I PN  T+   + AC G   A    +Q+H
Sbjct: 124 VFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVH 183

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
              +     S   + + L+D+YSK G +E A ++F      D V+   ++ G +QNG EE
Sbjct: 184 SRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEE 243

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA+ LF  M  + I   P ++S+VL          LG+Q+H L+IK  F S  +V NGL+
Sbjct: 244 EAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            +YS+   L  + ++FS M  R+ VS+NS+I+   + G   +ALEL+ +M+ + ++P  +
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 461 TFLSLLHACSHVGLVNKGMEF 481
           T  SLL AC+ VG ++KGM+ 
Sbjct: 364 TVASLLSACASVGALHKGMQL 384



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 125/278 (44%), Gaps = 6/278 (2%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           +  N   YL  +  C    +L E  ++H  + K     +  +  +L+D Y + G    A 
Sbjct: 54  VRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAV 113

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVD 371
           ++F+        S   ++  F       +   LF +M+  GI  +    + VL    G D
Sbjct: 114 KVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGD 173

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +    KQ+HS      F S+P V N LI++YSK G +E + KVF+ +  ++ V+W +MI
Sbjct: 174 IAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMI 233

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           +  +++G   +A+ L+ +M    + PT     S+L A + + L   G E L  +  V + 
Sbjct: 234 SGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELG-EQLHCL--VIKW 290

Query: 492 SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDV 527
              +E Y C  +V +  R+  LI A      M  +  V
Sbjct: 291 GFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGV 328



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 108/253 (42%), Gaps = 30/253 (11%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           ++H  I KS F   P + + L++ Y + GD   ++KVF   + R+  SWN MI  F    
Sbjct: 79  RLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQK 138

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           + F+   L+  M  EG+ P   TF  +L AC    +    ++ + S T  +         
Sbjct: 139 SNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVA 198

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
             ++D+  + G +  A+     + +K D++ W A++   S +G  E     A  LF    
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMK-DIVTWVAMISGLSQNGLEE----EAILLFCDMH 253

Query: 559 DS---PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
            S   P PY+L +++ S S                     T I   E+ +Q+H  V+   
Sbjct: 254 ASEIFPTPYVL-SSVLSAS---------------------TKIQLFELGEQLHCLVIKWG 291

Query: 616 MHPQADTIHGVLA 628
            H +    +G++A
Sbjct: 292 FHSETYVCNGLVA 304


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/542 (39%), Positives = 326/542 (60%), Gaps = 7/542 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC+++R+A  +F  +P R++VSWN +++GF+  G+ D  F +  R +E    
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAF-WLLRCMEEEGV 199

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  +F+ +L+  D  +   ++  +HC +   G + + TV NA ITSY +CGS     +
Sbjct: 200 RLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAER 259

Query: 213 VF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           VF G +  R+++TW ++++  + +   E   KLF+ M      P+  TY + + ACS   
Sbjct: 260 VFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKD 319

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTVI 329
               G+ +HG++ K  L+  + I +A++ MY  S   S+EDA  +F   E  D VS   I
Sbjct: 320 ---NGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSI 376

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L GF+Q G  E A++LFV M  A ++ID    SAVL       +L LG+QIH L +KS F
Sbjct: 377 LTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGF 436

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN FV + LI MYSKCG +ED+ K F + A  +S++WNS++ A+A+HG G  AL L+ +
Sbjct: 437 ESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQGDVALGLFFQ 496

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ + V+   +TF++ L ACSH+GLV +G   LKSM   + ISPR EHYAC VD+ GRAG
Sbjct: 497 MRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYACAVDLFGRAG 556

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA++ IE MP  PD +VW+ LLGAC   GD E+    A  L   +P+    Y++++N
Sbjct: 557 YLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEEHCTYVILSN 616

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y    RW E+A   + M+E  V K  G SWIE++ +VH+F+ DD+ H   + I+ +L +
Sbjct: 617 MYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVHAFIADDRCHSHFEEIYQILEQ 676

Query: 630 LL 631
           L+
Sbjct: 677 LM 678



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 19/463 (4%)

Query: 93  NSLLSFYLKCDQ--MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           N++LS Y +C    +  A  LFD+M  RDTV+WNTM+SG++ +G     +  +K     G
Sbjct: 38  NNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFG 97

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +F  IL     +    V + +H L+   GYEE V  G+AL+  Y KC      
Sbjct: 98  LMP-DAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDA 156

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  +  RN ++W A+I+G V    ++    L   M    +  +  T+   +      
Sbjct: 157 FMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEK 216

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA-EELDGVSMTVI 329
           +      Q+H  + K  +Q D  + +A +  YS+CGS+EDA ++F+ A    D V+   +
Sbjct: 217 KFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSM 276

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L  F  +  +E A +LF+ M + G E D    + ++       +   GK +H L+IK   
Sbjct: 277 LAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSHKDN---GKSLHGLVIKRGL 333

Query: 390 TSNPFVNNGLINMY--SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
                + N +I MY  S    +ED++ VF  M  ++ VSWNS++  F++ G+   AL+L+
Sbjct: 334 EQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLF 393

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVD 503
             M+   V+     F ++L +CS +  +  G +     +KS  E +     +     ++ 
Sbjct: 394 VHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASS-----LIF 448

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           M  + G++ +AR   E+   K   + W +++ A + HG  ++ 
Sbjct: 449 MYSKCGMIEDARKSFEK-TAKDSSITWNSIMFAYAQHGQGDVA 490



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 156/312 (50%), Gaps = 4/312 (1%)

Query: 164 SACDRSELSLVSKMI-HCLVYLCGYEEEVTVGNALITSYFKCGSS--SSGRKVFGEMRVR 220
           S  D S+ +L +  I HC     G   ++   N +++ Y +C S   +    +F EM  R
Sbjct: 6   SVIDSSKHALYNIFITHCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHR 65

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           + +TW  +ISG V +       +L+  M    + P++ T+ S +   +    L  G+Q+H
Sbjct: 66  DTVTWNTMISGYVNSGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVH 125

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            ++ K+  +  +   SAL+DMY+KC  V DA+ +F+     + VS   ++ GF   G  +
Sbjct: 126 SLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHD 185

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
            A  L   M + G+ +D    S +L +        L  Q+H  IIK     +  V N  I
Sbjct: 186 TAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATI 245

Query: 401 NMYSKCGDLEDSIKVFS-RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
             YS+CG LED+ +VF   +  R+ V+WNSM+AAF  H     A +L+ +M+  G EP  
Sbjct: 246 TSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDI 305

Query: 460 VTFLSLLHACSH 471
            T+ +++ ACSH
Sbjct: 306 YTYTTIISACSH 317



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 190/419 (45%), Gaps = 75/419 (17%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT------------------ 89
           S LL++  ++  + L   LH   IK    FDN     V NAT                  
Sbjct: 207 SPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDN----TVCNATITSYSQCGSLEDAERVFD 262

Query: 90  --------VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
                   V WNS+L+ +L  D+   A KLF DM                        FG
Sbjct: 263 GAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQ----------------------FG 300

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
           F          + D  ++T I+SAC   +     K +H LV   G E+ V + NA+I  Y
Sbjct: 301 F----------EPDIYTYTTIISACSHKD---NGKSLHGLVIKRGLEQLVPICNAVIAMY 347

Query: 202 FKCGSSS--SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            +  S+S      VF  M  ++ ++W ++++G  Q    E  LKLFV M   +++ +   
Sbjct: 348 LESSSNSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYA 407

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + + + +CS L  L  G+QIH +  K   +S+  + S+L+ MYSKCG +EDA + FE   
Sbjct: 408 FSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTA 467

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           +   ++   I+  +AQ+G  + A+ LF +M    +++D     A L      + +GL +Q
Sbjct: 468 KDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTAC---SHIGLVEQ 524

Query: 380 IHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAA 433
              L+  + SD+  +P + +    ++++ + G L+++  +   M    +++ W +++ A
Sbjct: 525 GRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGA 583


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/597 (35%), Positives = 341/597 (57%), Gaps = 39/597 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LLS  A  G    G   H+  IK            + +  V+  SLL  Y+KC  
Sbjct: 353 VTVASLLSACASVGALPNGKQFHSYAIKA----------GMTSDIVVEGSLLDLYVKCSD 402

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           ++ A + F             +  G L N   +  F  F + +++     +Q ++  IL 
Sbjct: 403 IKTAHEFF-------------LCYGQLDN--LNKSFQIFTQ-MQIEGIVPNQFTYPSILK 446

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C     + + + IH  V   G++  V V + LI  Y K G      K+F  ++  +V++
Sbjct: 447 TCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVS 506

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTA+I+G  Q+  + E L LF +M    I  +++ + S++ AC+G+QAL +GRQIH    
Sbjct: 507 WTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSC 566

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 DL I +AL+ +Y++CG V +A+  F+     D VS   ++ GFAQ+G+ EEA+ 
Sbjct: 567 LSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALN 626

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F +M KAG+EI+     + +       ++ +GKQIH +I K+ + S   V+N LI +Y+
Sbjct: 627 IFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYA 686

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG ++D             +SWNSMI  +++HG GF+AL+L+E+MK   V P  VTF+ 
Sbjct: 687 KCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVG 733

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV++G+ + +SM+E H + P+ EHYACVVD++GR+GLL  A+ F+E MP++
Sbjct: 734 VLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQ 793

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           PD +VW+ LL AC++H + ++G++AA  L   +P   A Y+L++N+Y+ SG+W  R +  
Sbjct: 794 PDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTR 853

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           + MK+ GV KE G SW+E++  VH+F   D+ HP+AD I+  L  L     + GYVP
Sbjct: 854 QMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVP 910



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 240/455 (52%), Gaps = 32/455 (7%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           ++T I N L+  Y K   + +A K+F+++  RD+VSW  M+SG  +NG        ++  
Sbjct: 197 SSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNG--------YEEE 248

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             L F Q       I+LSAC + E     K +H LV   G+  E  V NAL+T Y + G+
Sbjct: 249 AMLLFCQ-------IVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGN 301

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            SS  ++F  M  R+ +++ ++ISGL Q       L LF KM+L    P+ +T  S + A
Sbjct: 302 LSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSA 361

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ + AL  G+Q H    K  + SD+ +E +L+D+Y KC  ++ A + F    +LD ++ 
Sbjct: 362 CASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLN- 420

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
                         ++ Q+F +M   GI  +     ++L       +  LG+QIH+ ++K
Sbjct: 421 --------------KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLK 466

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           + F  N +V++ LI+MY+K G L+ ++K+F R+   + VSW +MIA + +H    +AL L
Sbjct: 467 TGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNL 526

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++EM+ +G++  ++ F S + AC+ +  +++G + + + + +   S        +V +  
Sbjct: 527 FKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-IHAQSCLSGYSDDLSIGNALVSLYA 585

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           R G + EA +  +++  K +V  W +L+   +  G
Sbjct: 586 RCGKVREAYAAFDQIYAKDNV-SWNSLVSGFAQSG 619



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 219/449 (48%), Gaps = 37/449 (8%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+ FYL    +  AV +FD+MP+R    WN + + F+         G F+R L     + 
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV-EF 161

Query: 155 DQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           D+  F ++L  C  + +S    + IH      G+E    + N LI  YFK G  SS +KV
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  ++ R+ ++W A+ISGL QN   EE + LF ++ L               AC+ ++  
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLS--------------ACTKVEFF 267

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+Q+HG++ K    S+  + +AL+ +YS+ G++  A QIF    + D VS   ++ G 
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQ G+   A+ LF KM     + D   V+++L       +L  GKQ HS  IK+  TS+ 
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI 387

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V   L+++Y KC D++ + + F                 + +  N  K+ +++ +M++E
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIE 432

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLL 511
           G+ P   T+ S+L  C+ +G  + G +     T+V +   +   Y  + ++DM  + G L
Sbjct: 433 GIVPNQFTYPSILKTCTTLGATDLGEQI---HTQVLKTGFQFNVYVSSVLIDMYAKHGKL 489

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIH 540
             A     R+  + DV+ W A++   + H
Sbjct: 490 DHALKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 30/228 (13%)

Query: 345 LFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           LF +M+   +E D  + + VL G  G   S    +QIH+  I S F S+ F+ N LI++Y
Sbjct: 150 LFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLY 209

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV--- 460
            K G L  + KVF  +  R+SVSW +MI+  +++G   +A+ L+ ++ L      +    
Sbjct: 210 FKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEF 269

Query: 461 -----------TFLSLLHAC-------SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
                       F S  + C       S  G ++   +    M++  R+S     Y  ++
Sbjct: 270 GKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS-----YNSLI 324

Query: 503 DMVGRAGLLIEARSFIERMPV---KPDVLVWQALLGACSIHGDSEMGK 547
             + + G +  A +  ++M +   KPD +   +LL AC+  G    GK
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGK 372


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/620 (34%), Positives = 343/620 (55%), Gaps = 37/620 (5%)

Query: 66  LHASFIKTFEPFDN----QNVYN-VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           L+ + I T+    +    +NV++ +P   +  WN+LLS Y K   +++  ++FD MP  D
Sbjct: 42  LYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHD 101

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            VSWN+++SG+  NG        +   L+ G   L++ +F+ +L          + + IH
Sbjct: 102 VVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIH 161

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV----------------- 222
             ++  GY+  + VG+ L+  Y K G  +   ++F E+  +N+                 
Sbjct: 162 GQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIV 221

Query: 223 --------------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
                         I+WT +I+GL QN L++E +  F +M +     +  T+ S + AC 
Sbjct: 222 EAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACG 281

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  AL EG+QIH  + +   Q ++ + SAL+DMY KC +V+ A  +F      + +S T 
Sbjct: 282 GFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTA 341

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +LVG+ QNG+ EEA+++F  M +  I  D   + +V+       SL  G Q H   + S 
Sbjct: 342 MLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASG 401

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 V+N LI +Y KCG LE + ++F  M  R+ VSW ++++ +A+ G   + + L+E
Sbjct: 402 LICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFE 461

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M   G+ P  VTF+ +L ACS  GLV KG  + + M + HRI+P  +HY C++D++ RA
Sbjct: 462 TMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRA 521

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA++FI +MP  PD + W  LL +C ++G+ E+GK+AAE L   +P +PA YIL++
Sbjct: 522 GRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLS 581

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           +IY+  G+W + AK  K M+EMGV KE G SWI+ + +VH F  DD+  P +D I+  L 
Sbjct: 582 SIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLE 641

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   MI+EGYVP+  F+LH
Sbjct: 642 SLYLKMIEEGYVPDMSFVLH 661



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 170/391 (43%), Gaps = 57/391 (14%)

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           +TA +    + +   +  KL  ++   L NP +  Y + +     L  L   R +    +
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNV----F 63

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
               Q +L   + L+  YSK G ++D  ++F+     D VS   +L G+A NG   E+++
Sbjct: 64  DHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVR 123

Query: 345 LFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           ++  M+K G + ++    S +L +      + LG+QIH  I K  + S  FV + L++MY
Sbjct: 124 VYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMY 183

Query: 404 SKCGDLEDSIKVFSRMAPRN-------------------------------SVSWNSMIA 432
           +K G + D+ ++F  +  +N                               S+SW ++I 
Sbjct: 184 AKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIIT 243

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
              ++G   +A++ ++EM +EG      TF S+L AC        G   L    ++H   
Sbjct: 244 GLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACG-------GFLALDEGKQIHAYI 296

Query: 493 PRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            R ++       + ++DM  +   +  A +   +M  K +V+ W A+L     +G SE  
Sbjct: 297 IRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHK-NVISWTAMLVGYGQNGYSE-- 353

Query: 547 KYAAEKLFLAQPDS---PAPYILMANIYSCS 574
              A ++F     +   P  + L + I SC+
Sbjct: 354 --EAVRIFCDMQRNEIHPDDFTLGSVISSCA 382


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/604 (33%), Positives = 345/604 (57%), Gaps = 11/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LL+  A  G    G  LH+  +K    FD           +   SLL  Y+KC  
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD----------YITEGSLLDLYVKCGD 295

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A  +F+     + V WN M+  + +  +    F  F +    G +  ++ ++  IL 
Sbjct: 296 IETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHP-NKFTYPCILR 354

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K       RK+   +  R+V++
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS 414

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ+   EE L  F +M    + P+++   S+  AC+G++A+ +G QIH  ++
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVY 474

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                +D+ I + L+++Y++CG  E+A+ +F   +  D ++   ++ GF Q+   E+A+ 
Sbjct: 475 VSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALM 534

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F+KM +AG + +     + +        +  GKQ+H   +K+  TS   V N LI++Y 
Sbjct: 535 VFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYG 594

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +ED+  +FS M+ RN VSWN++I + ++HG G +AL+L+++MK EG++P DVTF+ 
Sbjct: 595 KCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIG 654

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSHVGLV +G+ + KSM+ V+ ++P  +HYACVVD++GRAG L  AR F++ MP+ 
Sbjct: 655 VLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT 714

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            + ++W+ LL AC +H + E+G+ AA+ L   +P   A Y+L++N Y+ +G+W  R +  
Sbjct: 715 ANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVR 774

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MK+ G+ KE G SWIE++  VH+F V D++HP +D I+  L+EL   +   GY     
Sbjct: 775 KMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENP 834

Query: 645 FILH 648
            + H
Sbjct: 835 NLFH 838



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 228/447 (51%), Gaps = 7/447 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           +I N L+  Y K   +  A ++F ++  RD VSW  M+SG+ + G   +G   F+   ++
Sbjct: 79  LIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG---LGKEAFRLYSQM 135

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            +  +    + +  +LSAC + +L    +MIH  VY   +  E  VGNALI  Y   GS 
Sbjct: 136 HWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSF 195

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               +VF +M   + +T+  +ISG  Q    E  L++F +M L  + P+ +T  S + AC
Sbjct: 196 KLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC 255

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + +  L +G+Q+H  L K  +  D   E +L+D+Y KCG +E A  IF   +  + V   
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           ++LV + Q     ++ ++F +M   GI  +      +L        + LG+QIHSL IK+
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F S+ +V+  LI+MYSK   L+ + K+   +  R+ VSW SMIA + +H    +AL  +
Sbjct: 376 GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +EM+  GV P ++   S   AC+ +  + +G++ + +   V   +     +  +V++  R
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYAR 494

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALL 534
            G   EA S    +  K D + W  L+
Sbjct: 495 CGRSEEAFSLFREIDHK-DEITWNGLI 520



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 125/496 (25%), Positives = 236/496 (47%), Gaps = 15/496 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS   K   F  G  +HA   K  + F ++        T + N+L++ YL     +
Sbjct: 147 LSSVLSACTKGKLFAQGRMIHAQVYK--QAFCSE--------TFVGNALIALYLGFGSFK 196

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F DM   D V++NT++SG  + G  +     F   ++L   + D  +   +L+AC
Sbjct: 197 LAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDE-MQLSGLRPDCVTVASLLAAC 255

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                    K +H  +   G   +     +L+  Y KCG   +   +F      NV+ W 
Sbjct: 256 ASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWN 315

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++    Q     +  ++F +M    I+PN  TY   +  C+    +  G QIH +  K 
Sbjct: 316 LMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKN 375

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +SD+ +   L+DMYSK   ++ A +I E  E+ D VS T ++ G+ Q+ F EEA+  F
Sbjct: 376 GFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF 435

Query: 347 VKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +M   G+  D   + SA     G+  ++  G QIH+ +  S + ++  + N L+N+Y++
Sbjct: 436 KEMQDCGVWPDNIGLASAASACAGI-KAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR 494

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG  E++  +F  +  ++ ++WN +I+ F +     +AL ++ +M   G +    TF+S 
Sbjct: 495 CGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISA 554

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + A +++  + +G +      +    S   E    ++ + G+ G + +A+     M ++ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTS-ETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 526 DVLVWQALLGACSIHG 541
           +V  W  ++ +CS HG
Sbjct: 614 EV-SWNTIITSCSQHG 628



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 191/388 (49%), Gaps = 3/388 (0%)

Query: 154 LDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           L  A  T  L AC  R     +   IH    + G   +  +GN LI  Y K G     R+
Sbjct: 40  LGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQ 99

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  R+ ++W A++SG  Q  L +E  +L+ +MH   + P      S + AC+  + 
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKL 159

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             +GR IH  ++K A  S+  + +AL+ +Y   GS + A ++F      D V+   ++ G
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ G  E A+Q+F +M  +G+  D   V+++L        L  GKQ+HS ++K+  + +
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFD 279

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                 L+++Y KCGD+E +  +F+     N V WN M+ A+ +  +  K+ E++ +M+ 
Sbjct: 280 YITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQA 339

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+ P   T+  +L  C+  G +  G E + S++  +           ++DM  +   L 
Sbjct: 340 TGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIH 540
           +AR  +E M  K DV+ W +++     H
Sbjct: 399 KARKILE-MLEKRDVVSWTSMIAGYVQH 425


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/551 (41%), Positives = 323/551 (58%), Gaps = 3/551 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELG 150
           +SLL+ Y K   +  A  LFD+MP R+ VSW TM+SG+      D  F  FK  R  E G
Sbjct: 155 SSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKG 214

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++  FT +LSA     L    + +H L    G    V+V NAL+T Y KCGS    
Sbjct: 215 KNE-NEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDA 273

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K F     +N ITW+A+++G  Q    ++ LKLF  MH     P+  T +  + ACS  
Sbjct: 274 LKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDA 333

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            A+ EGRQ+HG   KL  +  L + SAL+DMY+KCGS+ DA + FE  ++ D V  T I+
Sbjct: 334 CAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSII 393

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+ QNG  E A+ L+ KM   G+  +   +++VL       +L  GKQ+H+ IIK +F+
Sbjct: 394 TGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFS 453

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               + + L  MY+KCG L+D  ++F RM  R+ +SWN+MI+  +++G G + LEL+E+M
Sbjct: 454 LEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKM 513

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            LEG +P +VTF++LL ACSH+GLV++G  + K M +   I+P  EHYAC+VD++ RAG 
Sbjct: 514 CLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGK 573

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA+ FIE   V   + +W+ LL A   H D ++G YA EKL        + Y+L+++I
Sbjct: 574 LHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSI 633

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+  G+W++  +    MK  GV KE G SWIE++   H FVV D MHPQ D I   L  L
Sbjct: 634 YTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSLTHVFVVGDNMHPQIDEIRLGLKLL 693

Query: 631 LRLMIDEGYVP 641
            +LM DEGY P
Sbjct: 694 TKLMKDEGYQP 704



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/525 (26%), Positives = 248/525 (47%), Gaps = 20/525 (3%)

Query: 44  YVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCD 103
           ++ + R L    +      G +LHA  +          V    ++T I NSL++ Y KC 
Sbjct: 10  HLQVLRALVHCTRHKQLRKGRALHARIL----------VTGSFSSTQIANSLINLYAKCS 59

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQL--DQASF 159
               A  +FD +  +D VSWN +++ F +              R L +    +  +  + 
Sbjct: 60  HFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTL 119

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T + +A      S   +  H L        +V   ++L+  Y K G     R +F EM  
Sbjct: 120 TGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPE 179

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLF--VKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           RN ++W  +ISG    +L +E  +LF  ++      N N   + S + A +    +  GR
Sbjct: 180 RNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGR 239

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H +  K  L   + + +AL+ MY KCGS+EDA + FE +   + ++ + ++ GFAQ G
Sbjct: 240 QVHSLAMKNGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFG 299

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             ++A++LF  M ++G       +  V+       ++  G+Q+H   +K  +    +V +
Sbjct: 300 DSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLS 359

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++MY+KCG + D+ K F  +   + V W S+I  + ++G+   AL LY +M+L GV P
Sbjct: 360 ALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIP 419

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            D+T  S+L ACS++  +++G +    + + +  S      + +  M  + G L +    
Sbjct: 420 NDLTMASVLKACSNLAALDQGKQMHAGIIK-YNFSLEIPIGSALSAMYAKCGSLDDGYRI 478

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL--AQPDS 560
             RMP + DV+ W A++   S +G    G    EK+ L   +PD+
Sbjct: 479 FWRMPAR-DVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDN 522



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 32/335 (9%)

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           L  L +++ C+  + L +GR +H  +      S   I ++L+++Y+KC     A  +F+ 
Sbjct: 11  LQVLRALVHCTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDS 70

Query: 318 AEELDGVSMTVILVGFAQNGFEEEA---MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
               D VS   ++  F+Q      +   M LF ++V A   I PN    + GVF   ++L
Sbjct: 71  INNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPN-AHTLTGVFTAASTL 129

Query: 375 G---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
                G+Q H+L +K+  + + F  + L+NMY K G + ++  +F  M  RN+VSW +MI
Sbjct: 130 SDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMI 189

Query: 432 AAFARHGNGFKALELYEEMKLE--GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           + +A      +A EL++ M+ E  G    +  F S+L A +   LVN G        +VH
Sbjct: 190 SGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTG-------RQVH 242

Query: 490 RISPRAEHYACVVD-------MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            ++ +     C+V        M  + G L +A    E +    + + W A++   +  GD
Sbjct: 243 SLAMK-NGLVCIVSVANALVTMYVKCGSLEDALKTFE-LSGNKNSITWSAMVTGFAQFGD 300

Query: 543 SEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           S+     A KLF     S   P+ + L+  I +CS
Sbjct: 301 SD----KALKLFYDMHQSGELPSEFTLVGVINACS 331



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 13/137 (9%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ N + ++ +L   +       G  +HA  IK          YN      I ++L + Y
Sbjct: 417 VIPNDLTMASVLKACSNLAALDQGKQMHAGIIK----------YNFSLEIPIGSALSAMY 466

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +  ++F  MP RD +SWN M+SG  +NG  + G   F++ + L   + D  +F
Sbjct: 467 AKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEK-MCLEGTKPDNVTF 525

Query: 160 TIILSACDRSELSLVSK 176
             +LSAC  S + LV +
Sbjct: 526 VNLLSAC--SHMGLVDR 540


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 340/623 (54%), Gaps = 14/623 (2%)

Query: 26  TKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85
            K+ +D  +  +K    N +  + +LSI A E     G  LH   I     FD       
Sbjct: 58  VKVFEDMRNCQTK---PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFD------- 107

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
               ++ N+L++ Y K  Q+ +A+KLF+ MP  + V+WN M++GF++NG  D     F  
Sbjct: 108 ---PLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSE 164

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +  G    D  +F   L +   S      K IH  +   G   +V + +ALI  YFKC 
Sbjct: 165 MISAGVSP-DSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCR 223

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 K+F +    +++  TA+ISG V N L  + L++F  +    ++PN++T  S + 
Sbjct: 224 DVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLP 283

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+GL  L  G+++H  + K  L     + SA+MDMY+KCG ++ A+QIF    E D V 
Sbjct: 284 ACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVC 343

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              I+   +QNG  +EA+ LF +M + G+  D   +SA L       +L  GK IHS +I
Sbjct: 344 WNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMI 403

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S  F  + LI+MY KCG+L  +  VF  M  +N VSWNS+IAA+  HG+   +L 
Sbjct: 404 KGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLA 463

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+ +M  +G++P  VTFL++L AC H G V+KG+++ + MTE + I  R EHYAC+VD+ 
Sbjct: 464 LFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLF 523

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L EA   I+ MP  PD  VW  LLGAC +HG+ E+ + A+  L    P++   Y+
Sbjct: 524 GRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYV 583

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+++ +G+W    K    MK+ GV K  G SWIE+ K  H FV  D  HP++  I+ 
Sbjct: 584 LLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYS 643

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
           VL  LL  +  EGY P     +H
Sbjct: 644 VLNNLLLELRKEGYCPKPYLPMH 666



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/512 (29%), Positives = 270/512 (52%), Gaps = 15/512 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + +SL+  Y +   + +A +LFD MP +D V WN M++GF++ GE +     F+  R+ +
Sbjct: 9   VGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQ 68

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               + +  +F  +LS C    LS     +H LV  CG+  +  V NAL+  Y K G  S
Sbjct: 69  T---KPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLS 125

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              K+F  M   NV+TW  +I+G VQN   +E   LF +M    ++P+S+T+ S + + +
Sbjct: 126 DALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVT 185

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              +L +G++IHG + +  +  D+ ++SAL+D+Y KC  V  A +IF+ +  +D V  T 
Sbjct: 186 ESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTA 245

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ G+  NG   +A+++F  +++  +  +   +++VL       +L LGK++H+ I+K  
Sbjct: 246 IISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHG 305

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 V + +++MY+KCG L+ + ++F RM  +++V WN++I   +++G   +A++L+ 
Sbjct: 306 LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFR 365

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M  EG+    V+  + L AC+++  ++ G      M +    S      A ++DM G+ 
Sbjct: 366 QMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESA-LIDMYGKC 424

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL--AQPDSPAPYIL 566
           G L  AR   + M  K +V  W +++ A   HG  E+      K+     QPD    ++ 
Sbjct: 425 GNLSVARCVFDMMREKNEV-SWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPD----HVT 479

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
              I S  G   +  K I+  + M   +E GI
Sbjct: 480 FLTILSACGHAGQVDKGIQYFRCM--TEEYGI 509



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/360 (29%), Positives = 187/360 (51%), Gaps = 4/360 (1%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  +  VG++LI  Y + G     R++F +M  ++ + W  +++G V+       +K+F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQSDLCIESALMDMYSK 304
             M      PNS+T+ S +  C+  +AL E G Q+HG++       D  + +AL+ MYSK
Sbjct: 62  EDMRNCQTKPNSITFASVLSICAS-EALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G + DA ++F    + + V+   ++ GF QNGF +EA  LF +M+ AG+  D    ++ 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           L       SL  GK+IH  I++     + F+ + LI++Y KC D+  + K+F +    + 
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           V   ++I+ +  +G    ALE++  +  E + P  VT  S+L AC+ +  +N G E   +
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + + H +  R    + ++DM  + G L  A     RMP K D + W A++  CS +G  +
Sbjct: 301 ILK-HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNGKPQ 358


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/592 (38%), Positives = 333/592 (56%), Gaps = 40/592 (6%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T  WNSL+S   K   +  A +LF  MP  D  SWN+MVSGF ++  F+    +F +   
Sbjct: 81  TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR 140

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             F  L++ SF   LSAC       +   +H LV    Y  +V +G+ALI  Y KCGS +
Sbjct: 141 EDFL-LNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              +VF  M  RN++TW ++I+   QN    E L++FV+M    + P+ +T  S V AC+
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259

Query: 269 GLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFE----------- 316
            L AL EG QIH  + K    + DL + +AL+DMY+KC  V +A ++F+           
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSET 319

Query: 317 ------------------FAE--ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
                             F++  + + VS   ++ G+ QNG  EEA++LF  + +  I  
Sbjct: 320 SMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWP 379

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT------SNPFVNNGLINMYSKCGDLE 410
                  +L        L LG+Q H+ ++K  F       S+ FV N LI+MY KCG +E
Sbjct: 380 THYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIE 439

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           D  +VF +M  R+ VSWN++I  +A++G G +AL+++ +M + G +P  VT + +L ACS
Sbjct: 440 DGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACS 499

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV +G  +  SM E H + P  +HY C+VD++GRAG L EA++ IE MPV PD +VW
Sbjct: 500 HAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVW 558

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            +LL AC +HG+ EMGK+AAEKL    P +  PY+L++N+Y+  GRW +  +  K M++ 
Sbjct: 559 GSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQ 618

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           GV K+ G SWIE+E +VH F+V DK HP    I+ VL  L   M   GY+P+
Sbjct: 619 GVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPD 670



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 237/510 (46%), Gaps = 92/510 (18%)

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           K  L    Y  + + F  +L +C RS  +  ++++H  + +  +  E+ + N LI  Y K
Sbjct: 3   KHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGK 62

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVI-------------------------------SGL 232
           C      RK+F  M  RN  TW ++I                               SG 
Sbjct: 63  CDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGF 122

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
            Q+  +EE L+ FVKMH      N  ++ S++ AC+GL  L  G Q+H ++ K    +D+
Sbjct: 123 AQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDV 182

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + SAL+DMYSKCGSV  A ++F    E + V+   ++  + QNG   EA+++FV+M+ +
Sbjct: 183 YMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDS 242

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLED 411
           G+E D   +++V+       +L  G QIH+ ++K++ F  +  + N L++MY+KC  + +
Sbjct: 243 GLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302

Query: 412 SIKVFSRMA-------------------------------PRNSVSWNSMIAAFARHGNG 440
           + +VF RM+                                RN VSWN++IA + ++G  
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHAC-----------SHVGLVNKGMEFLKSMTEVH 489
            +AL L+  +K E + PT  TF +LL AC           +H  ++ +G EF +S  E  
Sbjct: 363 EEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEF-QSGAESD 421

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
                +     ++DM  + G + +     E+M  + D + W A++   + +G      Y 
Sbjct: 422 IFVGNS-----LIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAIIVGYAQNG------YG 469

Query: 550 AEKL-----FLAQPDSPAPYILMANIYSCS 574
           AE L      L   + P    ++  + +CS
Sbjct: 470 AEALQIFRKMLVCGEKPDHVTMIGVLCACS 499



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 160/354 (45%), Gaps = 64/354 (18%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           FD  ++ NV + T    S++S Y +   ++ A  +F  M  R+ VSWN +++G+ +NGE 
Sbjct: 307 FDRMSIRNVVSET----SMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV------YLCGYEEE 190
           +     F R L+         +F  +LSAC      L+ +  H  V      +  G E +
Sbjct: 363 EEALRLF-RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESD 421

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + VGN+LI  Y KCGS   G +VF +M+ R+ ++W A+I G  QN    E L++F KM +
Sbjct: 422 IFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLV 481

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQI------HGILWKLALQSDLCIESALMDMYSK 304
               P+ +T +  + ACS    + EGR        HG+   + L+      + ++D+  +
Sbjct: 482 CGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGL---IPLKDHY---TCMVDLLGR 535

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--S 362
            G + +A  + E                                     + ++P+ V   
Sbjct: 536 AGCLNEAKNLIE------------------------------------AMPVNPDAVVWG 559

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKV 415
           ++L    V  ++ +GK     +++ D + S P+V   L NMY++ G   D ++V
Sbjct: 560 SLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVL--LSNMYAELGRWGDVVRV 611


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 341/596 (57%), Gaps = 17/596 (2%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           A +G    G  +H   IK+           + +   + NS+++ Y K   + +A  +FD 
Sbjct: 204 AADGAVEKGVQVHTMVIKS----------GLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  R+ VSWN+M++GF+ NG     F  F R + L   +L Q  F  ++  C   +    
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYR-MRLEGVKLTQTIFATVIKLCANIKEMSF 312

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLV 233
           +K +HC V   G + ++ +  AL+ +Y KC       K+F  M  V+NV++WTA+ISG V
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           QN   +  + LF +M    + PN  TY + + A     A     QIH ++ K   ++   
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA----NAAVSPSQIHALVVKTNYENSPS 428

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +AL D YSK G   +A +IFE  +E D V+ + +L G+AQ G  E A+++F+++ K G
Sbjct: 429 VGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEG 488

Query: 354 IEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           +E +    S+VL      T S+  GKQ HS  IKS F++   V++ L+ MY+K G++E +
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 548

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +VF R   R+ VSWNSMI+ +A+HG G K+L+++EEM+ + +E   +TF+ ++ AC+H 
Sbjct: 549 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GLVN+G  +   M + + I P  EHY+C+VD+  RAG+L +A   I +MP      +W+ 
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL AC +H + ++G+ AAEKL   QP   A Y+L++NIY+ +G W+ERAK  K M    V
Sbjct: 669 LLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKV 728

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            KE G SWIE++ +  SF+  D  HPQ+D I+  L EL   + D GY P+ +++LH
Sbjct: 729 KKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLH 784



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 137/455 (30%), Positives = 234/455 (51%), Gaps = 28/455 (6%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD+ P +     N ++  F RN +       F   L       D +S + +L  C   
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLF-LGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
              +V K +HC    CG+ E+V+VG +L+  Y K  S   G +VF EMRV+NV++WT+++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +G  QN L E+ LKLF +M L  I PN  T+ + +   +   A+ +G Q+H ++ K  L 
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           S + + +++++MYSK   V DA  +F+  E  + VS   ++ GF  NG + EA +LF +M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCG 407
              G+++   + + V+ +      +   KQ+H  +IK  SDF  N  +   L+  YSKC 
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN--IKTALMVAYSKCS 343

Query: 408 DLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           +++D+ K+F  M   +N VSW ++I+ + ++G   +A+ L+ +M+ EGV P   T+ ++L
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL 403

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIER 520
            A + V           S +++H +  +  +         + D   + G   EA    E 
Sbjct: 404 TANAAV-----------SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFEL 452

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           +  K D++ W A+L   +  GD E     A K+FL
Sbjct: 453 IDEK-DIVAWSAMLSGYAQMGDIE----GAVKIFL 482



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 240/459 (52%), Gaps = 21/459 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+  Y+K + + +  ++FD+M +++ VSW ++++G+ +NG  +     F + ++L 
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ-MQLE 187

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  +F  +L              +H +V   G +  + VGN+++  Y K    S  
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF  M  RN ++W ++I+G V N L  E  +LF +M L  +      + + +  C+ +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG-VSMTVI 329
           + +   +Q+H  + K     DL I++ALM  YSKC  ++DA+++F     +   VS T I
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNG  + AM LF +M + G+  +    S +L      +      QIH+L++K+++
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVVKTNY 423

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            ++P V   L + YSK GD  ++ K+F  +  ++ V+W++M++ +A+ G+   A++++ +
Sbjct: 424 ENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQ 483

Query: 450 MKLEGVEPTDVTFLSLLHACSH-VGLVNKGMEFLKSMTEVHRISPRA--EHYACV----V 502
           +  EGVEP + TF S+L+AC+     V +G +F       H  S ++   +  CV    V
Sbjct: 484 LAKEGVEPNEFTFSSVLNACAAPTASVEQGKQF-------HSCSIKSGFSNALCVSSALV 536

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            M  + G +  A    +R  V  D++ W +++   + HG
Sbjct: 537 TMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQHG 574


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 336/565 (59%), Gaps = 9/565 (1%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P    NVY       +  SLL+ Y K   + +A ++FD MP R++ SW+TMV+G+     
Sbjct: 147 PSAVSNVY-------VCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKC 199

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            +  F  F+  LE    +  +   T +LSA       L+ + +H L+   G  + V+V N
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           +L+T Y K G   +   VF   R RN ITW+A+I+G  QN   +  + +F +MH     P
Sbjct: 260 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 319

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
              T++  + A S L AL  G+Q HG++ KL  +  + ++SAL+DMY+KCG + DA + F
Sbjct: 320 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E+D V  T ++ G  QNG  EEA+ L+ +M K GI    + +++ L       +L 
Sbjct: 380 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 439

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            GKQ+H+ I+K        V + L  MYSKCG+LED + VF R+  R+ ++WNS+I+ F+
Sbjct: 440 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 499

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           ++G G  AL+L+EEMK+EG  P ++TF+++L ACSH+GLV++G E+   MT+ + ++PR 
Sbjct: 500 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRL 559

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF- 554
           +HYAC+VD++ RAG+L EA+ FIE + +     +W+ +LGAC    D ++G YA E+L  
Sbjct: 560 DHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLME 619

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           L   DS A YIL++NIY+   +W +  +    M+  GV+K+ G SW+E+  +VH FVV +
Sbjct: 620 LGTRDSSA-YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGE 678

Query: 615 KMHPQADTIHGVLAELLRLMIDEGY 639
           + HP+A+ I+  L  L + M DEGY
Sbjct: 679 QQHPEAENINAQLRRLAKHMKDEGY 703



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 231/487 (47%), Gaps = 23/487 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY--LKCDQMRNAVKLFDDMP--MR 118
           G +LHA  +K+             +   + NSL++FY  L    +  A  +FDD+P   R
Sbjct: 31  GEALHAWALKS----------GAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAAR 80

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D  SWN++++   R+   D     F+  L          SF    +A  R+  +      
Sbjct: 81  DVASWNSLLNPLSRHRPLD-ALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAA 139

Query: 179 HCLVYLCGYEEEVT---VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           H L   C     V+   V  +L+  Y K G  S  R++F  M  RN  +W+ +++G    
Sbjct: 140 HALA--CKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAE 197

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVM-ACSGLQALCEGRQIHGILWKLALQSDLCI 294
           +  EE   LF  M     +  S    ++V+ A S    L  G Q+HG++ K  L   + +
Sbjct: 198 KCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSV 257

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
           E++L+ MY+K G +  A+ +FE + E + ++ + ++ G+AQNG  + A+ +F +M  AG 
Sbjct: 258 ENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGF 317

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
                    VL       +L +GKQ H L++K  F    +V + L++MY+KCG + D+ +
Sbjct: 318 TPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKE 377

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
            F ++   + V W +M++   ++G   +AL LY  M  EG+ P+  T  S L AC+ +  
Sbjct: 378 GFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAA 437

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +  G +    + + + +   A   + +  M  + G L +  S   R+P + DV+ W +++
Sbjct: 438 LEPGKQLHTQIVK-YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSII 495

Query: 535 GACSIHG 541
              S +G
Sbjct: 496 SGFSQNG 502



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 30/187 (16%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD--LEDSIKVFSRMAP--RNSVSWNSMIA 432
           G+ +H+  +KS   S+  V N LIN YS      L  +  VF  + P  R+  SWNS++ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
             +RH     AL  +  M       +  T L   H+ +             + T  H ++
Sbjct: 91  PLSRH-RPLDALSRFRSML------SSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALA 143

Query: 493 ---PRA--EHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              P A    Y C  +++M  + G++ +AR   + MP + +   W  ++           
Sbjct: 144 CKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQR-NSFSWSTMVAG--------- 193

Query: 546 GKYAAEK 552
             YAAEK
Sbjct: 194 --YAAEK 198


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 336/565 (59%), Gaps = 9/565 (1%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P    NVY       +  SLL+ Y K   + +A ++FD MP R++ SW+TMV+G+     
Sbjct: 147 PSAVSNVY-------VCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 199

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            +  F  F+  LE    +  +   T +LSA       L+ + +H L+   G  + V+V N
Sbjct: 200 SEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           +L+T Y K G   +   VF   R RN ITW+A+I+G  QN   +  + +F +MH     P
Sbjct: 260 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 319

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
              T++  + A S L AL  G+Q HG++ KL  +  + ++SAL+DMY+KCG + DA + F
Sbjct: 320 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E+D V  T ++ G  QNG  EEA+ L+ +M K GI    + +++ L       +L 
Sbjct: 380 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 439

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            GKQ+H+ I+K        V + L  MYSKCG+LED + VF R+  R+ ++WNS+I+ F+
Sbjct: 440 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 499

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           ++G G  AL+L+EEMK+EG  P ++TF+++L ACSH+GLV++G E+   MT+ + ++PR 
Sbjct: 500 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRL 559

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF- 554
           +HYAC+VD++ RAG+L EA+ FIE + +     +W+ +LGAC    D ++G YA E+L  
Sbjct: 560 DHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLME 619

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           L   DS A YIL++NIY+   +W +  +    M+  GV+K+ G SW+E+  +VH FVV +
Sbjct: 620 LGTGDSSA-YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGE 678

Query: 615 KMHPQADTIHGVLAELLRLMIDEGY 639
           + HP+A+ I+  L  L + M DEGY
Sbjct: 679 QQHPEAENINAQLRRLAKHMKDEGY 703


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 336/559 (60%), Gaps = 5/559 (0%)

Query: 85  VPNAT---VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           +P+A     +  SLL+ Y K   + +A ++FD MP R++ SW+TMV+G+      +  F 
Sbjct: 40  IPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFD 99

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F+  LE    +  +   T +LSA       L+ + +H L+   G  + V+V N+L+T Y
Sbjct: 100 LFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 159

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            K G   +   VF   R RN ITW+A+I+G  QN   +  + +F +MH     P   T++
Sbjct: 160 AKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFV 219

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
             + A S L AL  G+Q HG++ KL  +  + ++SAL+DMY+KCG + DA + F+   E+
Sbjct: 220 GVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEV 279

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D V  T ++ G  QNG  EEA+ L+ +M K GI    + +++ L       +L  GKQ+H
Sbjct: 280 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 339

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + I+K        V + L  MYSKCG+LED + VF R+  R+ ++WNS+I+ F+++G G 
Sbjct: 340 TQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGN 399

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL+L+EEMK+EG  P ++TF+++L ACSH+GLV++G E+   MT+ + ++PR +HYAC+
Sbjct: 400 GALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACM 459

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDS 560
           VD++ RAG+L EA+ FIE + +     +W+ +LGAC    D ++G YA E+L  L   DS
Sbjct: 460 VDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDS 519

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
            A YIL++NIY+   +W +  +    M+  GV+K+ G SW+E+  +VH FVV ++ HP+A
Sbjct: 520 SA-YILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPEA 578

Query: 621 DTIHGVLAELLRLMIDEGY 639
           + I+  L  L + M DEGY
Sbjct: 579 ENINAQLRRLAKHMKDEGY 597


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 356/612 (58%), Gaps = 13/612 (2%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           +++ L+ ++  + L+S +A  G  H G S+HA   K          Y   +  +I N+ +
Sbjct: 84  TRIRLNQFI-FASLISAAASLGDNHYGESIHACVCK----------YGFESDILISNAFV 132

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           + Y+K   + N  + F  M + +  S N ++SGF      D G     + L  GF + + 
Sbjct: 133 TMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGF-EPNM 191

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +F  IL  C         K IH  V   G   +  + N+L+  Y KCGS++   KVFGE
Sbjct: 192 YTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  R+V++WTA+I+G V  + Y  GL++F +M     NPN  T++S + +CS L  +  G
Sbjct: 252 IPERDVVSWTALITGFVA-EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+H  + K +L  +  + +AL+DMY+K   +EDA  IF    + D  + TVI+ G+AQ+
Sbjct: 311 KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQD 370

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E+A++ F++M + G++ +   +++ L       +L  G+Q+HS+ IK+  + + FV 
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVA 430

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + L++MY+KCG +ED+  VF  +  R++VSWN++I  +++HG G KAL+ +E M  EG  
Sbjct: 431 SALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTV 490

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P +VTF+ +L ACSH+GL+ +G +   S+++++ I+P  EHYAC+VD++GRAG   E  S
Sbjct: 491 PDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVES 550

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FIE M +  +VL+W+ +LGAC +HG+ E G+ AA KLF  +P+  + YIL++N+++  G 
Sbjct: 551 FIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGM 610

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W +       M   GV KE G SW+E+  QVH F+  D  HP+   IH  L +L + ++ 
Sbjct: 611 WDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMS 670

Query: 637 EGYVPNKRFILH 648
            GY PN   +LH
Sbjct: 671 VGYTPNTDHVLH 682



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/493 (27%), Positives = 256/493 (51%), Gaps = 23/493 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +W+SL++ Y+KC+ ++ A ++ ++MP++D   WN  +S    N  + +     + +++L 
Sbjct: 26  LWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS--ANSPYPL-----QEAVQL- 77

Query: 151 FY-------QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           FY       +L+Q  F  ++SA      +   + IH  V   G+E ++ + NA +T Y K
Sbjct: 78  FYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMK 137

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
             S  +G + F  M + N+ +   ++SG    +  ++G ++ +++ +    PN  T++S 
Sbjct: 138 TQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISI 197

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           +  C+    L EG+ IHG + K  +  D  + ++L+++Y+KCGS   A ++F    E D 
Sbjct: 198 LKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 257

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIH 381
           VS T ++ GF   G+    +++F +M+  G   +PNM +  ++L      + + LGKQ+H
Sbjct: 258 VSWTALITGFVAEGY-GSGLRIFNQMLAEG--FNPNMYTFISILRSCSSLSDVDLGKQVH 314

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + I+K+    N FV   L++MY+K   LED+  +F+R+  R+  +W  ++A +A+ G G 
Sbjct: 315 AQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGE 374

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           KA++ + +M+ EGV+P + T  S L  CS +  ++ G + L SM      S      + +
Sbjct: 375 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASAL 433

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VDM  + G + +A    + + V  D + W  ++   S HG       A E + L +   P
Sbjct: 434 VDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAM-LDEGTVP 491

Query: 562 APYILMANIYSCS 574
                +  + +CS
Sbjct: 492 DEVTFIGVLSACS 504


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 337/594 (56%), Gaps = 32/594 (5%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN +  WN++LS Y K   +    ++F  MP RD VSWN+++SG++  G        +  
Sbjct: 69  PN-SFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNS 127

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            ++ G   L++ +F+ +L          + + IH  +   G+   V VG++L+  Y K G
Sbjct: 128 MMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMG 187

Query: 206 SSSSGRKVFGEMRVRNV-------------------------------ITWTAVISGLVQ 234
             S   +VF E++ RNV                               I+WT +I+GL+Q
Sbjct: 188 LVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQ 247

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N L  E + LF  M    +  +  T+ S + AC GL+AL EG++IH ++ +     ++ +
Sbjct: 248 NGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFV 307

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL+DMY KC SV  A  +F+     + VS T +LVG+ QNGF EEA+++F  M + GI
Sbjct: 308 GSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGI 367

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           E D   + +V+       SL  G Q H   + S   S   V+N LI +Y KCG +EDS +
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQ 427

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M+ R+ VSW ++++ +A+ G   + ++L+E M ++G++P  VTF+++L ACS  GL
Sbjct: 428 LFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGL 487

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V +G ++ +SM + H I P ++HY C++D+ GRAG L EA++FI +MP  PD + W  LL
Sbjct: 488 VERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLL 547

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
            +C ++G+ E+GK+AAE L    P +PA YIL+++IY+  G+W   A+  + M+E G  K
Sbjct: 548 SSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARK 607

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           E G SWI+ + +V+ F  DD+  P +D I+  L +L   MI+EGYVP+   +LH
Sbjct: 608 EPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLH 661



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
            K++H LIIKS      F+ N LIN YSK G++  +  VF +M   NS SWN+M++A+++
Sbjct: 24  AKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSK 83

Query: 437 HGNGFKALELYEEM 450
            G+     E++  M
Sbjct: 84  SGDLSTMQEIFSIM 97


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 329/587 (56%), Gaps = 11/587 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   HA  IK     D +          I  +L+S Y+K   M  A ++FD +  RD  
Sbjct: 180 LGKEFHAQVIKVGFVSDFR----------IGTALVSMYVKGGSMDGARQVFDGLYKRDVS 229

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           ++N M+ G+ ++G+ +  F  F R  + GF + ++ SF  IL  C   E     K +H  
Sbjct: 230 TFNVMIGGYAKSGDGEKAFQLFYRMQQEGF-KPNRISFLSILDGCSTPEALAWGKAVHAQ 288

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G  ++V V  ALI  Y  CGS    R+VF +M+VR+V++WT +I G  +N   E+ 
Sbjct: 289 CMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDA 348

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
             LF  M    I P+ +TY+  + AC+    L   R+IH  + +    +DL +++AL+ M
Sbjct: 349 FGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHM 408

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KCG+++DA Q+F+     D VS + ++  + +NG  EEA + F  M +  +E D    
Sbjct: 409 YAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTY 468

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +L   G   +L LG +I++  IK+D  S+  V N LINM  K G +E +  +F  M  
Sbjct: 469 INLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQ 528

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ V+WN MI  ++ HGN  +AL+L++ M  E   P  VTF+ +L ACS  G V +G  F
Sbjct: 529 RDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRF 588

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              + +   I P  E Y C+VD++GRAG L EA   I RMP+KP+  +W  LL AC I+G
Sbjct: 589 FSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYG 648

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + ++ + AAE+  +++P   A Y+ ++++Y+ +G W+  AK  K M+  GV KE G +WI
Sbjct: 649 NLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWI 708

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           E+E ++H+FVV+D+ HPQA  I+  LA L+  +  EGY+P  + +LH
Sbjct: 709 EVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLH 755



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/452 (30%), Positives = 245/452 (54%), Gaps = 3/452 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  +  C  M  A + FD +  +  V+WN +++G+ + G     F  F++ ++    
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAM- 158

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +    +F I+L AC       + K  H  V   G+  +  +G AL++ Y K GS    R+
Sbjct: 159 EPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQ 218

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  R+V T+  +I G  ++   E+  +LF +M      PN +++LS +  CS  +A
Sbjct: 219 VFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEA 278

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ +H       L  D+ + +AL+ MY  CGS+E A ++F+  +  D VS TV++ G
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRG 338

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A+N   E+A  LF  M + GI+ D      ++        L L ++IHS ++++ F ++
Sbjct: 339 YAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+  L++MY+KCG ++D+ +VF  M+ R+ VSW++MI A+  +G G +A E +  MK 
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKR 458

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             VEP  VT+++LL+AC H+G ++ GME      +   +S      A +++M  + G + 
Sbjct: 459 NNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNA-LINMNVKHGSIE 517

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            AR   E M V+ DV+ W  ++G  S+HG++ 
Sbjct: 518 RARYIFENM-VQRDVVTWNVMIGGYSLHGNAR 548



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 208/425 (48%), Gaps = 21/425 (4%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +D  ++  +   C     + + K +   +   G +  +   N LI  +  CG+   
Sbjct: 55  GSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLE 114

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+ F  +  + V+TW A+I+G  Q    +E   LF +M    + P+ +T+L  + ACS 
Sbjct: 115 ARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSS 174

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  G++ H  + K+   SD  I +AL+ MY K GS++ A Q+F+   + D  +  V+
Sbjct: 175 PAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVM 234

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKS 387
           + G+A++G  E+A QLF +M + G +  PN +S +  + G  T  +L  GK +H+  + +
Sbjct: 235 IGGYAKSGDGEKAFQLFYRMQQEGFK--PNRISFLSILDGCSTPEALAWGKAVHAQCMNT 292

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               +  V   LI MY  CG +E + +VF +M  R+ VSW  MI  +A + N   A  L+
Sbjct: 293 GLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLF 352

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACV 501
             M+ EG++P  +T++ +++AC+           L    E+H    RA           +
Sbjct: 353 ATMQEEGIQPDRITYIHIINACASSA-------DLSLAREIHSQVVRAGFGTDLLVDTAL 405

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           V M  + G + +AR   + M  + DV+ W A++GA   +G    G+ A E   L + ++ 
Sbjct: 406 VHMYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENG---CGEEAFETFHLMKRNNV 461

Query: 562 APYIL 566
            P ++
Sbjct: 462 EPDVV 466


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 334/582 (57%), Gaps = 11/582 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F LG  LHA  +KT   +DN          ++  + L  Y KCD+M +A K+F+  P   
Sbjct: 287 FELGTQLHAYALKTNFGYDN----------IVGTATLDMYAKCDRMVDARKVFNTFPNPT 336

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S N ++ G+ R  +       F RSL+  +   D+ S +  L+AC   +  L    +H
Sbjct: 337 RQSHNALIVGYARQDQVLEALEIF-RSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLH 395

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L   CG +  + V N ++  Y KCG+      +F +M +++ ++W A+I+   QN+  E
Sbjct: 396 GLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVE 455

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E L LFV M    + P+  T+ S V AC+G +AL  G ++HG + K  +  D  + SA++
Sbjct: 456 ETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAII 515

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG + +A +I E  EE   VS   I+ GF+     E A+  F +M++ G+  D  
Sbjct: 516 DMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNF 575

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL +     ++ LGKQIH  I+K    S+ ++ + +++MYSKCG+++DS  +F + 
Sbjct: 576 TYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKA 635

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+W++MI A+A HG G  A++L+EEM+L+ V+P    F+S+L AC+H+G V+KG+
Sbjct: 636 PKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGL 695

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            + + M   + + P+ EHY+C+VD++GR+G + EA   IE MP + D ++W+ LLG C +
Sbjct: 696 HYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRL 755

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            G+ E+ + AA  L    P   + Y+L++N+Y+ +G W E AK    MK   + KE G S
Sbjct: 756 QGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCS 815

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           WI++  +VH+F+V DK HP+++ I+     L+  M  +GYVP
Sbjct: 816 WIQVRDEVHAFLVGDKAHPRSEEIYQQTHLLVDEMKWDGYVP 857



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 238/470 (50%), Gaps = 13/470 (2%)

Query: 81  NVYN-VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
           NV++ +P   VI WN+++  Y     M  A  LFD MP RD VSWN+M+S +L+NG    
Sbjct: 94  NVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRK 153

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
               F + + L   Q D A+F ++L AC   E   +   +HCL    G++ +V  G AL+
Sbjct: 154 SIEIFTK-MRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALV 212

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y  C        +F EM  RN + W+AVI+G V+N  + EGLKL+  M    +  +  
Sbjct: 213 DMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQA 272

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T+ S+  +C+GL A   G Q+H    K     D  + +A +DMY+KC  + DA ++F   
Sbjct: 273 TFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTF 332

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
                 S   ++VG+A+     EA+++F  + K+ ++ D   +S  L           G 
Sbjct: 333 PNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI 392

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+H L +K     N  V N +++MY+KCG L ++  +F  M  +++VSWN++IAA  ++ 
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNE 452

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPR 494
           +  + L L+  M    +EP D TF S++ AC+    +N GME     +KS   +      
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGS 512

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           A     ++DM  + G+L+EA    ER+  +  V  W +++   S     E
Sbjct: 513 A-----IIDMYCKCGMLVEAEKIHERLEERTTV-SWNSIISGFSSEKQGE 556



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 117/510 (22%), Positives = 227/510 (44%), Gaps = 64/510 (12%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F+ I   C   +     K  H  + + G+   V V N L+  Y KC + +    VF +M
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 218 RVRNVITWTAVISG-------------------------------LVQNQLYEEGLKLFV 246
             R+VI+W  +I G                                +QN  + + +++F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           KM L  I  +  T+   + AC+G++    G Q+H +  ++   SD+   +AL+DMYS C 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            ++ A+ IF    E + V  + ++ G+ +N    E ++L+  M+  G+ +     ++   
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                ++  LG Q+H+  +K++F  +  V    ++MY+KC  + D+ KVF+        S
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
            N++I  +AR     +ALE++  ++   ++  +++    L ACS +    +G+       
Sbjct: 340 HNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI------- 392

Query: 487 EVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           ++H ++ +   +   CV    +DM  + G L+EA    + M +K D + W A++ A    
Sbjct: 393 QLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAA---- 447

Query: 541 GDSEMGKYAAEKL-----FLAQPDSPAPYILMANIYSCSGR------WKERAKAIKRMKE 589
              E  ++  E L      L     P  Y   + + +C+G+       +   + IK    
Sbjct: 448 --HEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIK--SG 503

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           MG+D   G + I++  +    V  +K+H +
Sbjct: 504 MGLDWFVGSAIIDMYCKCGMLVEAEKIHER 533



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 136/308 (44%), Gaps = 45/308 (14%)

Query: 253 INPNS-LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           +NP   LT+      CS L+A+  G+Q H  +        + + + L+  Y KC ++  A
Sbjct: 33  MNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYA 92

Query: 312 WQIF------------------------EFAE-------ELDGVSMTVILVGFAQNGFEE 340
           + +F                        EFA+       E D VS   +L  + QNGF  
Sbjct: 93  FNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHR 152

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +++++F KM    I+ D    + VL         GLG Q+H L I+  F S+      L+
Sbjct: 153 KSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALV 212

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYS C  L+ +  +F  M  RNSV W+++IA + R+    + L+LY+ M  EG+  +  
Sbjct: 213 DMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQA 272

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH-YACVV-----DMVGRAGLLIEA 514
           TF S   +C+       G+   +  T++H  + +    Y  +V     DM  +   +++A
Sbjct: 273 TFASAFRSCA-------GLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDA 325

Query: 515 RSFIERMP 522
           R      P
Sbjct: 326 RKVFNTFP 333


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/571 (38%), Positives = 331/571 (57%), Gaps = 7/571 (1%)

Query: 77  FDNQNVY--NVPNATV----IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           FD + V+   +  A++    + +SL++FY K   +  A KLFD MP R+ VSW TM+SG+
Sbjct: 129 FDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGY 188

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
                     G F   + L    L++  FT +LSA    E     K +HC+V   G  E 
Sbjct: 189 ASKQMAKEALGVFGL-MRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEF 247

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V+V NAL+T Y KCG+ +    +F     +N ITW+A+I+G  Q     + LKLF KMH 
Sbjct: 248 VSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHY 307

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               P+  T +  + ACS + A+ EG+Q HG L K   ++ +   +AL+DMY+K G   D
Sbjct: 308 AGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGD 367

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A + F+F  E D V  T I+ G+ QNG  EEA+ ++ +M    I  +   +++VL     
Sbjct: 368 ARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSN 427

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             +L  GKQIH+  IK        + + L  MY+KCG LE+ + +F RM  R+ VSWN+M
Sbjct: 428 LAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAM 487

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+  +++G+G +ALEL+EEM+LEG +P  +TF+++L ACSH+G+V +G  +   M +   
Sbjct: 488 ISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFC 547

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           + PR EHYAC+VD++ RAG L EA+ FIE   +   + +W+ LL AC  H + E+G YA 
Sbjct: 548 LVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAG 607

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           EKL        + Y+L+++IY+  GR  +  +  + MK  GV KETG SWIE++  VH F
Sbjct: 608 EKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVF 667

Query: 611 VVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           VV D++HPQ + I G +  L + M D+GY P
Sbjct: 668 VVGDQIHPQIEEIQGAIWRLRKHMKDDGYRP 698



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 248/502 (49%), Gaps = 17/502 (3%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  IK   P+       + +   + N+L+ FY KC  +  A  +F+++  ++ VS
Sbjct: 26  GQILHAHIIKI--PY-------LSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVS 76

Query: 123 WNTMVSGFLRNGEFDMGF--GFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIH 179
           +N ++ G   NG     F    F+R +       D  +F  + +A   +   +  ++ +H
Sbjct: 77  YNCLIHGLSHNGSKGSNFVLELFRRMIANNILP-DAHTFPGVFTAAALNLGCNFDARQVH 135

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L       ++V VG++L+  Y K G     RK+F  M  RN+++WT +ISG    Q+ +
Sbjct: 136 VLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAK 195

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E L +F  M L   N N   + S + A    + +  G+Q+H ++ K  +   + + +AL+
Sbjct: 196 EALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALV 255

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
            MY+KCG++  +  +FE   + + ++ + ++ G++Q G   +A++LF KM  AG      
Sbjct: 256 TMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEF 315

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +  VL       ++  GKQ H  ++KS + +  +    L++MY+K G   D+ K F  +
Sbjct: 316 TLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFL 375

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
              + V W S+IA + ++G   +AL +Y  M++  + P ++T  S+L ACS++  + +G 
Sbjct: 376 LEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGK 435

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           + + + T  + + P     + +  M  + G L E      RM ++ D++ W A++   S 
Sbjct: 436 Q-IHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM-LQRDIVSWNAMISGLSQ 493

Query: 540 --HGDSEMGKYAAEKLFLAQPD 559
             HG   +  +   +L   +PD
Sbjct: 494 NGHGREALELFEEMRLEGTKPD 515


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/608 (35%), Positives = 352/608 (57%), Gaps = 15/608 (2%)

Query: 44  YVDISR-LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           Y D+ R LL   A+      G  +HA+ +K+  +P    N Y       + N+LLS Y K
Sbjct: 46  YSDVFRGLLQECARLRSLEQGREVHAAILKSGIQP----NRY-------LENTLLSMYAK 94

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +A ++FD +  R+ VSW  M+  F+   +    F  ++ +++L   + D+ +F  
Sbjct: 95  CGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYE-TMKLAGCKPDKVTFVS 153

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L+A    EL  + + +H  +   G E E  VG +L+  Y KCG  S  R +F  +  +N
Sbjct: 154 LLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKN 213

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWT +I+G  Q    +  L+L   M    + PN +T+ S +  C+   AL  G+++H 
Sbjct: 214 VVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHR 273

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + +     +L + ++L+ MY KCG +E+A ++F      D V+ T ++ G+AQ GF +E
Sbjct: 274 YIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDE 333

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +M + GI+ D    ++VL        L  GK+IH  ++ + +  + ++ + L++
Sbjct: 334 AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVS 393

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF-ARHGNGFKALELYEEMKLEGVEPTDV 460
           MY+KCG ++D+  VF++M+ RN V+W ++I    A+HG   +ALE +++MK +G++P  V
Sbjct: 394 MYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKV 453

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF S+L AC+HVGLV +G +  +SM   + I P  EHY+C VD++GRAG L EA + I  
Sbjct: 454 TFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILS 513

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP  P   VW ALL AC +H D E G+ AAE +    PD    Y+ +++IY+ +GR+++ 
Sbjct: 514 MPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDA 573

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            K  + M++  V KE G SWIE++ +VH F V+DK HP+++ I+  L +L   + + GYV
Sbjct: 574 EKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYV 633

Query: 641 PNKRFILH 648
           P+ RF+LH
Sbjct: 634 PDTRFVLH 641



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 14/312 (4%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S L +    +E L +   M L      S  +   +  C+ L++L +GR++H  + K  +
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           Q +  +E+ L+ MY+KCGS+ DA ++F+   + + VS T ++  F       EA + +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M  AG + D     ++L  F     L LG+++H  I+++     P V   L+ MY+KCGD
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +  +  +F R+  +N V+W  +IA +A+ G    ALEL E M+   V P  +TF S+L  
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMP 522
           C+    +  G        +VHR   ++ +         ++ M  + G L EAR     +P
Sbjct: 259 CTTPAALEHG-------KKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP 311

Query: 523 VKPDVLVWQALL 534
            + DV+ W A++
Sbjct: 312 HR-DVVTWTAMV 322



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 7/232 (3%)

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             + G  +EA+ +   M+  G  +  ++   +L       SL  G+++H+ I+KS    N
Sbjct: 22  LCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 81

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            ++ N L++MY+KCG L D+ +VF  +  RN VSW +MI AF       +A + YE MKL
Sbjct: 82  RYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKL 141

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYACVVDMVGRAGLL 511
            G +P  VTF+SLL+A ++  L+  G +    + E    + PR      +V M  + G +
Sbjct: 142 AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDI 199

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
            +AR   +R+P K +V+ W  L+   +  G  ++   A E L   Q    AP
Sbjct: 200 SKARVIFDRLPEK-NVVTWTLLIAGYAQQGQVDV---ALELLETMQQAEVAP 247


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 337/608 (55%), Gaps = 23/608 (3%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           + + LL +         G  +H   I       N    NV   T + N     Y KC Q+
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLIT------NSFAANVFAMTGVVN----MYAKCRQI 198

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA------SF 159
            +A K+FD MP RD VSWNT+++GF +NG       F K++LEL     D+       + 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNG-------FAKKALELVLRMQDEGQRPDSITL 251

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L A     L +V K IH      G+ + V +  AL   Y KCGS  + R +F  M  
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           + V++W +++ G VQN   E+ + +F KM    I+P  +T + ++ AC+ L  L  G+ +
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + +L L SD+ + ++L+ MYSKC  V+ A  IF        VS   +++G+AQNG  
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV 431

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA+  F +M   G++ D   + +V+      +     K IH LII+S    N FV   L
Sbjct: 432 SEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTAL 491

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MYSKCG +  + K+F  ++ R+ ++WN+MI  +  HG G  AL+L+++MK   VEP D
Sbjct: 492 VDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPND 551

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +T+LS++ ACSH GLV++G+   KSM + + + P  +HY  +VD++GRAG + EA  FIE
Sbjct: 552 ITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIE 611

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP+ P + V+ A+LGAC IH + E+G+ AA+KLF   PD    ++L+ANIY+ + +W +
Sbjct: 612 NMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSK 671

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            A+  K M++ G+ K  G S +E+  +VHSF      HPQ+  I+  L EL+  +   GY
Sbjct: 672 VAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGY 731

Query: 640 VPNKRFIL 647
           VP+   IL
Sbjct: 732 VPDTNLIL 739



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 246/510 (48%), Gaps = 16/510 (3%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  +    L+S + K   +  A ++F+ +  +    ++TM+ G+ +N   +    F  R 
Sbjct: 79  NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCR- 137

Query: 147 LELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +     +    +FT +L  C D ++L    K IH  +    +   V     ++  Y KC 
Sbjct: 138 MRYDDVKPVVYNFTYLLKVCGDNADLKR-GKEIHGQLITNSFAANVFAMTGVVNMYAKCR 196

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 K+F  M  R++++W  +I+G  QN   ++ L+L ++M      P+S+T ++ + 
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A + +  L  G+ IHG   +      + I +AL DMYSKCGSVE A  IF+  ++   VS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSL 383
              ++ G+ QNG  E+A+ +F KM++ G  IDP  V+ +  +        L  GK +H  
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEG--IDPTGVTIMEALHACADLGDLERGKFVHKF 374

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           + + +  S+  V N LI+MYSKC  ++ +  +F+ +  R  VSWN+MI  +A++G   +A
Sbjct: 375 VDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEA 434

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L  + EMK  G++P   T +S++ A + +  V +  +++  +     +         +VD
Sbjct: 435 LNCFSEMKSLGMKPDSFTMVSVIPALAELS-VTRHAKWIHGLIIRSCLDKNIFVTTALVD 493

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  + G +  AR   + M     V+ W A++     HG   +G+ A +     +  +  P
Sbjct: 494 MYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEP 549

Query: 564 ----YILMANIYSCSGRWKERAKAIKRMKE 589
               Y+ + +  S SG   E  +  K MK+
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQ 579



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 160/312 (51%), Gaps = 3/312 (0%)

Query: 170 ELSLVSKMIHCLVYLC---GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           EL    K +H ++ L    G   E      L++ + K GS +   +VF  +  +    + 
Sbjct: 57  ELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYH 116

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++ G  +N   E  L    +M    + P    +   +  C     L  G++IHG L   
Sbjct: 117 TMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN 176

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
           +  +++   + +++MY+KC  ++DA+++F+   E D VS   I+ GF+QNGF ++A++L 
Sbjct: 177 SFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELV 236

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++M   G   D   +  VL        L +GK IH   I++ F     ++  L +MYSKC
Sbjct: 237 LRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKC 296

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +E +  +F  M  +  VSWNSM+  + ++G   KA+ ++E+M  EG++PT VT +  L
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356

Query: 467 HACSHVGLVNKG 478
           HAC+ +G + +G
Sbjct: 357 HACADLGDLERG 368



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           TS+    QI  L+IK+   +       L++++SK G + ++ +VF  +  +    +++M+
Sbjct: 60  TSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTML 119

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             +A++ +   AL     M+ + V+P    F  LL  C     + +G E    +   +  
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI-TNSF 178

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           +        VV+M  +   + +A    +RMP + D++ W  ++   S +G     K A E
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER-DLVSWNTIIAGFSQNG---FAKKALE 234

Query: 552 KLFLAQPDSPAP 563
            +   Q +   P
Sbjct: 235 LVLRMQDEGQRP 246


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/637 (33%), Positives = 343/637 (53%), Gaps = 37/637 (5%)

Query: 49   RLLSISAKEGHFHLGPSLHASF----IKTFEPFDNQNVYNVPNATVIWNS-LLSFYLKCD 103
            R+     K   F+LG  L AS     I          V N+ N+ +I  S L+  Y KC 
Sbjct: 367  RMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCG 426

Query: 104  QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
             +  A ++F  +  R+ VS+N +++G+++ G+ +     +         Q DQ +FT +L
Sbjct: 427  MVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLL 486

Query: 164  SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            + C         + IH  +      + + V   L+  Y +CG  +  +++F  M  RN  
Sbjct: 487  TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 546

Query: 224  TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            +W ++I G  QN   +E L+LF +M L  I P+  +  S + +C  L    +GR++H  +
Sbjct: 547  SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 606

Query: 284  WKLALQSDLCIESALMDMYSKCGSVEDAWQI----------------------------- 314
             +  ++ +  ++  L+DMY+KCGS++ AW++                             
Sbjct: 607  VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAK 666

Query: 315  --FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
              F+  E+ +      IL G+A  G ++E+   F++M+++ IE D   +  ++ +     
Sbjct: 667  NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLP 726

Query: 373  SLGLGKQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +L  G Q+HSLIIK  F +   V    L++MYSKCG +  +  VF  M  +N VSWN+MI
Sbjct: 727  ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 786

Query: 432  AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
            + +++HG   +AL LYEEM  +G+ P +VTFL++L ACSH GLV +G+    SM E + I
Sbjct: 787  SGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNI 846

Query: 492  SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
              +AEHY C+VD++GRAG L +A+ F+E+MP++P+V  W ALLGAC +H D +MG+ AA+
Sbjct: 847  EAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQ 906

Query: 552  KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
            +LF   P +P PY++M+NIY+ +GRWKE     + MK  GV K+ G+SWIEI  ++  F 
Sbjct: 907  RLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFH 966

Query: 612  VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
               K HP+ + I+  L  L       GY+P+  FIL 
Sbjct: 967  AGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQ 1003



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 139/518 (26%), Positives = 256/518 (49%), Gaps = 18/518 (3%)

Query: 32  PTSSTSKLVLD-NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           PTS  +K   D N +  S L+        F  G S+H   I         N YN P+A +
Sbjct: 58  PTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI--------SNGYN-PDAYL 108

Query: 91  IWNSLLSFYLKC---DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           +   +L  Y +    D +  A KLF++MP R+  +WNTM+  + R  ++      + R  
Sbjct: 109 M-TKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMR 167

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G +  D+ +F  ++ AC   E     + +   V   G    + VG AL+  Y + G  
Sbjct: 168 GSGNFS-DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWM 226

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                   E+   +V+TW AVI+G V+   +EE   +F +M    + P++ T+ S++  C
Sbjct: 227 DDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L++   G+Q+H  L     + D  + +AL+DMY+KC   E   ++F+   E + V+  
Sbjct: 287 GALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWN 346

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            I+   AQ G   +A+ LF++M ++G + +   + ++L        +G G+++H  ++++
Sbjct: 347 SIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN 406

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              S+  + + L++MYSKCG +E++ +VF  +  RN VS+N+++A + + G   +ALELY
Sbjct: 407 LLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELY 466

Query: 448 EEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            +M+ E G++P   TF +LL  C++    N+G +    +   + I+        +V M  
Sbjct: 467 HDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN-ITKNIIVETELVHMYS 525

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             G L  A+    RM  + +   W +++     +G+++
Sbjct: 526 ECGRLNYAKEIFNRMAER-NAYSWNSMIEGYQQNGETQ 562


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/641 (33%), Positives = 350/641 (54%), Gaps = 40/641 (6%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           L+L         LS +    ++ LG   +A  +  F+     N+++       WN++LS 
Sbjct: 30  LILKTIKQPETFLSNNLITAYYKLGNLAYAHHV--FDHIPQPNLFS-------WNTILSV 80

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K   +    ++F+ MP RD VSWN  +SG+   G        +K  L+     L++ +
Sbjct: 81  YSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRIT 140

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG------------------------ 194
           F+ +L  C +     + + I+  +   G+  +V VG                        
Sbjct: 141 FSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMP 200

Query: 195 -------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
                  N +IT   +CG     +++F  ++ R+ I+WT +I+GL+QN L  E L +F +
Sbjct: 201 ERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFRE 260

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M L     +  T+ S + AC  L AL EG+QIH  + +   + ++ + SAL+DMYSKC S
Sbjct: 261 MRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRS 320

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           ++ A  +F+   + + +S T +LVG+ QNGF EEA+++F +M + G+E D   + +V+  
Sbjct: 321 IKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISS 380

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                SL  G Q H   + S   S   V+N LI +Y KCG  E+S ++F+ M  R+ VSW
Sbjct: 381 CANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSW 440

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +++A +A+ G   + + L+E M   G++P  VTF+ +L ACS  GLV KG+++ +SM +
Sbjct: 441 TALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIK 500

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
            H I P  +H  C++D++GRAG L EAR+FI  MP  PDV+ W  LL +C +HGD E+GK
Sbjct: 501 EHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGK 560

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
           +AA+ L   +P +PA Y+L++++Y+  G+W + A+  + M++  V KE G SWI+ + +V
Sbjct: 561 WAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKV 620

Query: 608 HSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           H F  DD+  P    I+  L +L   MI+EGYVP+   +LH
Sbjct: 621 HVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLH 661



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 224/479 (46%), Gaps = 66/479 (13%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS------------ 206
           +  +L  C  S+    +K +HCL+     + E  + N LIT+Y+K G+            
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 207 -------------------SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-V 246
                               S  +++F  M  R+ ++W   ISG        + ++++ +
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK-- 304
            +    +N N +T+ + ++ CS  + +  GRQI+G + K    SD+ + S L+DMY+K  
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 305 -----------------------------CGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
                                        CG +E++ ++F   +E D +S T+++ G  Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG E EA+ +F +M  AG  +D     +VL   G   +LG GKQIH+ +I++D   N FV
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            + L++MYSKC  ++ +  VF RM  +N +SW +M+  + ++G   +A++++ EM+  GV
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           EP D T  S++ +C+++  + +G +F         IS      A ++ + G+ G    + 
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNA-LITLYGKCGSTENSH 426

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
                M ++ +V  W ALL   +  G +       E++ LA    P     +  + +CS
Sbjct: 427 RLFTEMNIRDEV-SWTALLAGYAQFGKANETIGLFERM-LAHGLKPDGVTFIGVLSACS 483


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 331/606 (54%), Gaps = 11/606 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V  + +LS+ A E   + G  LH   + +    D          + + N+LL+ Y KC
Sbjct: 247 NSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMD----------SPVANTLLAMYAKC 296

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +A +LFD MP  D V+WN M+SG+++NG  D     F   +     + D  +F+  
Sbjct: 297 GHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMIS-ARMKPDSITFSSF 355

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L            K IHC +   G   +V + +ALI  YFKC      RK+F +    ++
Sbjct: 356 LPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDI 415

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +  TA+ISG V N +    L++F  +    +  NS+T  S + AC+GL AL  G+++HG 
Sbjct: 416 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGH 475

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K        + SA+MDMY+KCG ++ A Q F    + D V    ++   +QNG  EEA
Sbjct: 476 ILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 535

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M  AG + D   +SA L       +L  GK+IH+ +++  F S+ F  + LI+M
Sbjct: 536 IDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDM 595

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG+L+ + +VF  M  +N VSWNS+IAA+  HG    +L L+  M  +G++P  VTF
Sbjct: 596 YSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTF 655

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+++ AC H G V++G+ + + MTE   I  R EHYAC+VD+ GRAG L EA   I  MP
Sbjct: 656 LAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMP 715

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
             PD  VW  LLGAC +HG+ E+ + A+  LF   P +   Y+L++N+++ +G+W+   K
Sbjct: 716 FSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLK 775

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               MKE GV K  G SWI++    H FV  D+ HPQ+  I+ +L  L   +  EGYVP 
Sbjct: 776 IRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQ 835

Query: 643 KRFILH 648
               +H
Sbjct: 836 LYLPMH 841



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 233/461 (50%), Gaps = 15/461 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   LL  Y+ C    +A  +F  + +  +  WN M+ GF   G+FD    F+ + L  
Sbjct: 82  ILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    D+ +F  ++ AC       + +++H  +   G+E +V VG++LI  Y + G    
Sbjct: 142 GTLP-DKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F  M  ++ + W  +++G V+N  ++    +F++M     NPNS+T+   +  C+ 
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              +  G Q+HG++    L+ D  + + L+ MY+KCG + DA ++F+   + D V+   +
Sbjct: 261 EIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGM 320

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNGF +EA  LF +M+ A ++ D    S+ L +     +L  GK+IH  II++  
Sbjct: 321 ISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGV 380

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           + + F+ + LI++Y KC D+E + K+F +  P + V   +MI+ +  +G    ALE++  
Sbjct: 381 SLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 440

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYAC-----VVD 503
           +  E +    VT  S+L AC+       G+  L    E+H  I       +C     ++D
Sbjct: 441 LLQERMRANSVTLASVLPACA-------GLAALTLGKELHGHILKNGHGGSCYVGSAIMD 493

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G L  A      +  K D + W +++ +CS +G  E
Sbjct: 494 MYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSCSQNGKPE 533



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 6/276 (2%)

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S +  C+    L +GRQ H  +    +  +  + + L+ MY  CG+  DA  IF     
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
                   ++ GF   G  + A+  + KM+  G   D      V+   G   S+ LG+ +
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVV 169

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H  I    F  + FV + LI  YS+ G + D+  +F RM  ++ V WN M+  + ++G+ 
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW 229

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF--LKSMTEVHRISPRAEHY 498
             A  ++ EM+     P  VTF  +L  C+   ++N G +   L   + +   SP A   
Sbjct: 230 DNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN-- 287

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
             ++ M  + G L +AR   + MP K D++ W  ++
Sbjct: 288 -TLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMI 321



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 15/191 (7%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           P +VS +L      + L  G+Q H+ ++ +    N  +   L+ MY  CG   D+  +F 
Sbjct: 47  PQLVS-ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFY 105

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG---- 473
           ++    S  WN MI  F   G    AL  Y +M   G  P   TF  ++ AC  +     
Sbjct: 106 QLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVAL 165

Query: 474 --LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             +V+  ++F+    +V   S   + Y+         G + +AR   +RMP K  VL W 
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYS-------ENGCIHDARYLFDRMPSKDGVL-WN 217

Query: 532 ALLGACSIHGD 542
            +L     +GD
Sbjct: 218 VMLNGYVKNGD 228


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/553 (37%), Positives = 324/553 (58%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+ Y K   + +A  +FD+MP R+ VSW  MV+G+         F  F++ L     
Sbjct: 157 TALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPL 216

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++   T +LSA        +   +H LV   G    V+V N+L+T Y K G   +   
Sbjct: 217 HKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFH 276

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF   + RN ITW+A+I+G  QN   E  +++F +MH     P   T +  + ACS +  
Sbjct: 277 VFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGT 336

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L EG+Q HG++ KL  +  + ++SAL+DMY+KCG + DA + F    ELD V  T ++ G
Sbjct: 337 LMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTG 396

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             QNG  E+A+ L+ +M K G+  +   ++++L       +L  GKQ+H+ I+K  F   
Sbjct: 397 HVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLG 456

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + L  MYSKCG+LED + VF RM  R+ ++WNS+I+ F+++G G  A+ L+EEMKL
Sbjct: 457 ASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKL 516

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EG  P  VTF+++L ACSH+GLV++G  + +SM + + ++PR +HYAC+VD++ RAG+L 
Sbjct: 517 EGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLS 576

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA+ FIE + +     +W+ +LGAC    D ++G YA EKL        A YIL++NIY+
Sbjct: 577 EAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYILLSNIYA 636

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
              +W +  +    MK +GV K+ G SW+E+  +VH FVV ++ HP A+ I+  L  L +
Sbjct: 637 AQRKWNDVERVRYLMKLVGVSKDPGCSWVELNSRVHVFVVGEQQHPDAEIINTELRRLGK 696

Query: 633 LMIDEGYVPNKRF 645
            M DEGY P  ++
Sbjct: 697 HMKDEGYNPASKY 709


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 347/614 (56%), Gaps = 8/614 (1%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           S++  VL      + + + +A+      G   HA   K      + NV+       +  +
Sbjct: 111 SSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVF-------VSTA 163

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           LL+ Y K   + +A ++FD MP R+ VSW  MVSG+      +  F  F+  L+    + 
Sbjct: 164 LLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEK 223

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           ++   T +LSA       L+   +H LV   G    V+V N+L+T Y K     +   VF
Sbjct: 224 NEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVF 283

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
           G  + RN ITW+A+I+G  QN   +    +F++MH    +P   T++  + A S + AL 
Sbjct: 284 GSSKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALV 343

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM-TVILVGF 333
            G+Q HG++ KL  +  + ++SAL+DMY+KCG   DA   F    ++D V + T ++ G 
Sbjct: 344 VGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGH 403

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QNG  EEA+ L+ +M K G+      V++VL       +L  GKQ+H+ I+K  F    
Sbjct: 404 VQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCGFGLGG 463

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V   L  MYSKCG+LEDS+ VF RM  R+ +SWNS+I+ F++HG G  AL+L+EEMKLE
Sbjct: 464 SVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFEEMKLE 523

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+ P  +TF+++L ACSH+GLV++G  + ++M++ + + P+ +HYAC+VD++ RAG L E
Sbjct: 524 GIAPDHITFINVLCACSHMGLVDRGWFYFRAMSKDYGLIPKLDHYACIVDILSRAGQLKE 583

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A+ FIE + +     +W+ +LGAC    D ++G YA E+L     +  + YIL++NIY+ 
Sbjct: 584 AKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYILLSNIYAA 643

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
             +W +  +    M+  GV K+ G SW+E+  QV+ FVV ++ HP+A+ I+  L  L + 
Sbjct: 644 QRKWNDVERVRHLMRLRGVSKDPGCSWVELNNQVNVFVVGEQQHPEAEKINVELIRLAKH 703

Query: 634 MIDEGYVPNKRFIL 647
           M DEGY    +F+ 
Sbjct: 704 MKDEGYRQTYKFLF 717



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 224/468 (47%), Gaps = 23/468 (4%)

Query: 89  TVIWNSLLSFYLKCDQMR----NAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGF 142
           T + NSL++FY  C   R     A  +F D+P  +RD  SWN++++   R+         
Sbjct: 49  TPVSNSLITFY--CSPPRPLLGAAFAVFADIPAGLRDVASWNSLLNPLSRHQPL-AALSH 105

Query: 143 FKRSLELGFYQLDQA-SFTIILSACDR---SELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
           F+  +      L    SF  + +A  R   +    V+    C +        V V  AL+
Sbjct: 106 FRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGAVAHAFACKLPSSSGSNNVFVSTALL 165

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNS 257
             Y K G+ S  R+VF +M  RN ++W A++SG    +  EE  +LF + +    +  N 
Sbjct: 166 NMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQECPLEKNE 225

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
               + + A S    L  G Q+HG++ K  L   + +E++L+ MY+K   ++ A  +F  
Sbjct: 226 FVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMAVFGS 285

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG-- 375
           ++E + ++ + ++ G+AQNG  + A  +F++M  AG    P   + V G+    + +G  
Sbjct: 286 SKERNSITWSAMITGYAQNGEADCAATMFLQMHSAGFS--PTEFTFV-GILNASSDMGAL 342

Query: 376 -LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAA 433
            +GKQ H L++K  F    +V + L++MY+KCG   D+   F ++   + V  W +MI  
Sbjct: 343 VVGKQAHGLMVKLGFERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITG 402

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
             ++G   +AL LY  M  EGV P+ +T  S+L AC+ +  +  G +    + +      
Sbjct: 403 HVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCG-FGL 461

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                  +  M  + G L ++     RMP + D++ W +++   S HG
Sbjct: 462 GGSVGTALSTMYSKCGNLEDSMVVFRRMPDR-DIISWNSIISGFSQHG 508


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/610 (34%), Positives = 350/610 (57%), Gaps = 13/610 (2%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ N    +  L          LG  +HA+ +K+    D   VY       + N+L++ Y
Sbjct: 156 VVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLD---VY-------VANALVAMY 205

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           ++  +M  A  +F ++  +D V+WN+M++GF++NG +     FF   L+    + DQ S 
Sbjct: 206 VRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF-YDLQNADLKPDQVSI 264

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             I+ A  R    L  K IH      G++  + VGN LI  Y KC   S G + F  M  
Sbjct: 265 ISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAH 324

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +++I+WT   +G  QN+ Y + L+L  ++ +  ++ ++    S ++AC GL  L + ++I
Sbjct: 325 KDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEI 384

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG   +  L SD  +++ ++D+Y +CG ++ A +IFE  E  D VS T ++  +  NG  
Sbjct: 385 HGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLA 443

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            +A+++F  M + G+E D   + ++L      ++L  GK+IH  II+  F     ++N L
Sbjct: 444 NKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTL 503

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY++CG +ED+ K+F+    RN + W +MI+A+  HG G  A+EL+  MK E + P  
Sbjct: 504 VDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDH 563

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +TFL+LL+ACSH GLVN+G  FL+ M   +++ P  EHY C+VD++GR   L EA   ++
Sbjct: 564 ITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVK 623

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            M  +P   VW ALLGAC IH + E+G+ AAEKL     D+P  Y+L++N+++ +GRWK+
Sbjct: 624 SMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKD 683

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL-RLMIDEG 638
             +   RMK  G+ K  G SWIE+  ++H+F+  DK+HP+ D I+  LA++  +L  + G
Sbjct: 684 VEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGG 743

Query: 639 YVPNKRFILH 648
           YV   +F+LH
Sbjct: 744 YVAQTKFVLH 753



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/496 (29%), Positives = 252/496 (50%), Gaps = 12/496 (2%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFG 141
           Y   +   + NSL++ Y KC+ +  A KLFD M +R D VSWN+++S +  NG       
Sbjct: 87  YGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALC 146

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F   L+ G    +  +F   L AC+ S    +   IH  +   G   +V V NAL+  Y
Sbjct: 147 LFSEMLKAGVVT-NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMY 205

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            + G       +FG +  ++++TW ++++G +QN LY E L+ F  +    + P+ ++ +
Sbjct: 206 VRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSII 265

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S ++A   L  L  G++IH    K    S++ + + L+DMY+KC  +    + F+     
Sbjct: 266 SIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHK 325

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D +S T    G+AQN    +A++L  ++   G+++D  M+ ++L        LG  K+IH
Sbjct: 326 DLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIH 385

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
              I+    S+P + N +I++Y +CG ++ ++++F  +  ++ VSW SMI+ +  +G   
Sbjct: 386 GYTIRGGL-SDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLAN 444

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           KALE++  MK  G+EP  VT +S+L A   +  + KG E    +     I   +     +
Sbjct: 445 KALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNT-L 503

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS- 560
           VDM  R G + +A   I       ++++W A++ A  +HG  E    AA +LF+   D  
Sbjct: 504 VDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMHGYGE----AAVELFMRMKDEK 558

Query: 561 --PAPYILMANIYSCS 574
             P     +A +Y+CS
Sbjct: 559 IIPDHITFLALLYACS 574



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 145/497 (29%), Positives = 244/497 (49%), Gaps = 25/497 (5%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  + +A  +FD M  R   +WN M+ G++ NGE       ++    LG    D  +
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGV-SFDSYT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F ++L AC   E       IH L    G +  V V N+L+  Y KC   +  RK+F  M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 219 VRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           VRN V++W ++IS    N +  E L LF +M    +  N+ T+ +++ AC     +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QIH  + K     D+ + +AL+ MY + G + +A  IF   E  D V+   +L GF QNG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA++ F  +  A ++ D   + +++   G    L  GK+IH+  IK+ F SN  V N
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MY+KC  +    + F  MA ++ +SW +  A +A++    +ALEL  ++++EG++ 
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE-----HYACVVDMVGRAGLLI 512
                 S+L AC       +G+  L  + E+H  + R           ++D+ G  G++ 
Sbjct: 361 DATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIID 413

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            A    E +  K DV+ W +++ +C +H    +  +  +++ K    +PD    Y+ + +
Sbjct: 414 YAVRIFESIECK-DVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPD----YVTLVS 467

Query: 570 IYS--CSGRWKERAKAI 584
           I S  CS    ++ K I
Sbjct: 468 ILSAVCSLSTLKKGKEI 484



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 3/235 (1%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCGSV DA  IF+   E    +   ++ G+  NG    A++++ +M   G+  D   
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
              +L   G+   L  G +IH L IK    S  FV N L+ +Y+KC D+  + K+F RM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 421 PRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
            RN  VSWNS+I+A++ +G   +AL L+ EM   GV     TF + L AC     +  GM
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +   ++ +  R+       A +V M  R G + EA      +  K D++ W ++L
Sbjct: 181 QIHAAILKSGRVLDVYVANA-LVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSML 233


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/589 (36%), Positives = 337/589 (57%), Gaps = 11/589 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG  LH   +KT          +     VI  + L  Y+KC+ + +A KLF+ +P  +
Sbjct: 291 LRLGSQLHGHALKT----------DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN 340

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S+N ++ G+ R+ +     G F R L+     LD+ S +    AC   +  L    +H
Sbjct: 341 LQSYNAIIVGYARSDKGIEALGMF-RLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVH 399

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L      +  + V NA++  Y KCG+      VF EM  R+ ++W A+I+   QN   E
Sbjct: 400 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 459

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L LFV M    + P+  TY S + AC+G QAL  G +IH  + K  L  D  +  AL+
Sbjct: 460 KTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALI 519

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMYSKCG +E A ++ +   E   VS   I+ GF+     EEA + F KM++ G++ D  
Sbjct: 520 DMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF 579

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + +L       ++ LGKQIH+ IIK +  S+ ++++ L++MYSKCG+++D   +F + 
Sbjct: 580 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 639

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+WN+M+  +A+HG G +AL+++E M+LE V+P   TFL++L AC H+GLV KG+
Sbjct: 640 PNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 699

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +  SM   + + P+ EHY+CVVD++GR+G + +A   IE MP + D ++W+ LL  C I
Sbjct: 700 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKI 759

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+ E+ + AA  +   +P+  A Y+L++NIY+ +G W E  K  K M+  G+ KE G S
Sbjct: 760 HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCS 819

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI+ +VH+F+V DK HP++  I+  L  L   M   GY+P+  FIL+
Sbjct: 820 WIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILN 868



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 163/543 (30%), Positives = 266/543 (48%), Gaps = 48/543 (8%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L  Y     +  A KLFD MP RD VSWN+++SG+L NG+       F +   
Sbjct: 108 TVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGR 167

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G    D+ +F ++L +C   E       IH L    G++ +V  G+AL+  Y KC    
Sbjct: 168 MGTV-FDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              + F  M  +N ++W+A+I+G VQN     GL+LF +M    +  +  T+ S   +C+
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL AL  G Q+HG   K    +D+ I +A +DMY KC ++ DA ++F      +  S   
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+VG+A++    EA+ +F  + K+G+ +D   +S       V      G Q+H L +KS 
Sbjct: 347 IIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSL 406

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN  V N +++MY KCG L ++  VF  M  R++VSWN++IAA  ++GN  K L L+ 
Sbjct: 407 CQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFV 466

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M   G+EP + T+ S+L AC+    +N GME    + +  R+   +     ++DM  + 
Sbjct: 467 WMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIK-SRLGLDSFVGIALIDMYSKC 525

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G++ +A    +R+  +  V+ W A++   S+   SE                        
Sbjct: 526 GMMEKAEKLHDRL-AEQTVVSWNAIISGFSLQKQSE------------------------ 560

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKE-----------TGISWIEIEKQVHSFVVDDKMH 617
                     E  K   +M EMGVD +             +  +E+ KQ+H+ ++  ++ 
Sbjct: 561 ----------EAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQ 610

Query: 618 PQA 620
             A
Sbjct: 611 SDA 613



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 238/455 (52%), Gaps = 3/455 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V  ++LL  Y KC ++  +++ F  MP ++ VSW+ +++G ++N +   G   FK   + 
Sbjct: 210 VTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKA 269

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   + Q++F  +  +C       +   +H       +  +V +G A +  Y KC + S 
Sbjct: 270 GV-GVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSD 328

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F  +   N+ ++ A+I G  ++    E L +F  +    +  + ++   +  AC+ 
Sbjct: 329 AQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAV 388

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++   EG Q+HG+  K   QS++C+ +A++DMY KCG++ +A  +FE     D VS   I
Sbjct: 389 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 448

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +    QNG EE+ + LFV M+++G+E D     +VL       +L  G +IH+ IIKS  
Sbjct: 449 IAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRL 508

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + FV   LI+MYSKCG +E + K+  R+A +  VSWN++I+ F+      +A + + +
Sbjct: 509 GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 568

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   GV+P + T+ ++L  C+++  V  G +    + +   +   A   + +VDM  + G
Sbjct: 569 MLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIK-KELQSDAYISSTLVDMYSKCG 627

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + + +   E+ P + D + W A++   + HG  E
Sbjct: 628 NMQDFQLIFEKAPNR-DFVTWNAMVCGYAQHGLGE 661



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 245/520 (47%), Gaps = 67/520 (12%)

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC----------- 204
           + +F+ I   C   +     K  H  + L  ++  V V N LI  Y KC           
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 205 --------------------GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
                               G     +K+F  M  R+V++W ++ISG + N  + + + +
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDV 161

Query: 245 FVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           F++M  +G +   + T+   + +CS L+    G QIHG+  K+    D+   SAL+DMY+
Sbjct: 162 FLQMGRMGTVFDRT-TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYA 220

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KC  ++ + Q F    E + VS + I+ G  QN      ++LF +M KAG+ +  +  ++
Sbjct: 221 KCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFAS 280

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           V       ++L LG Q+H   +K+DF ++  +    ++MY KC +L D+ K+F+ +   N
Sbjct: 281 VFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN 340

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
             S+N++I  +AR   G +AL ++  ++  G+   +V+      AC+   ++   +E L 
Sbjct: 341 LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA---VIKGDLEGL- 396

Query: 484 SMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              +VH +S ++  +   CV    +DM G+ G L+EA    E M V  D + W A++ A 
Sbjct: 397 ---QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAH 452

Query: 538 SIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKE-------RAKAIKRMKE 589
             +G+ E  K  +  +++ Q    P  +   + + +C+G W+          + IK    
Sbjct: 453 EQNGNEE--KTLSLFVWMLQSGMEPDEFTYGSVLKACAG-WQALNCGMEIHNRIIK--SR 507

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +G+D   GI+ I++  +         M  +A+ +H  LAE
Sbjct: 508 LGLDSFVGIALIDMYSKC-------GMMEKAEKLHDRLAE 540


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/604 (36%), Positives = 339/604 (56%), Gaps = 17/604 (2%)

Query: 48   SRLLSISAKEGHFHLGPSLHASFIK-TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
            + +LS  A      +G  LH+  IK  FE       YN+     + N+L+  Y KC  + 
Sbjct: 454  TSILSACACLECLEMGRQLHSFIIKHNFE-------YNL----FVENTLVDMYAKCGALE 502

Query: 107  NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
             A + F+ +  RD VSWN ++ G+++  + D  F  F+R +  G    D+ S   ILS C
Sbjct: 503  EARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAP-DEVSLASILSGC 561

Query: 167  DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
               +     + +HC +   G +  +  G++LI  Y KCG+  + R VF  M  R+V++  
Sbjct: 562  ANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMN 621

Query: 227  AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            A+I+G  QN L E  + LF +M    +NP+ +T+ S + AC+G   L  GRQIH ++ K 
Sbjct: 622  AIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKR 680

Query: 287  ALQSD-LCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             L  D   +  +L+ MY       DA  +F EF      +  T I+ G  QNG  EEA+Q
Sbjct: 681  GLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQ 740

Query: 345  LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
            L+ +M +     D    ++VL    +  SLG G+ IHSLI      S+    + +++MY+
Sbjct: 741  LYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYA 800

Query: 405  KCGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCGD++ S++VF  M  +N V SWNSMI  FA++G    AL++++EMK   + P DVTFL
Sbjct: 801  KCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFL 860

Query: 464  SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
             +L ACSH G V++G E    M   ++I PR +H AC++D++GR G L EA  FI+++  
Sbjct: 861  GVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNF 920

Query: 524  KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            +P+ ++W  LLGAC IHGD   G+ AAEKL   +P++ +PY+L++NIY+ SG W E    
Sbjct: 921  EPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSV 980

Query: 584  IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
             + M+E G+ K  G SWI + ++ + FV  DK HP A  IH +L +L+ LM ++GY+   
Sbjct: 981  RRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAET 1040

Query: 644  RFIL 647
              +L
Sbjct: 1041 DSLL 1044



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 243/444 (54%), Gaps = 7/444 (1%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           ++ + D  VD   +   +   G+  +G  L    +K FE  D Q +  VP+  V + +++
Sbjct: 236 ARKIFDAVVDPDTVSWTAMIAGYVQVG--LPEEALKVFE--DMQKLGLVPD-QVAFVTVI 290

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           +  +   ++ +A  LF  MP  + V+WN M+SG ++ G       FFK   + G  +  +
Sbjct: 291 TACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGV-KSTR 349

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           ++   +LSA    E      ++H      G    V VG++LI  Y KC    + +KVF  
Sbjct: 350 STLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDA 409

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  RN++ W A++ G  QN    + +KLF +M      P+  TY S + AC+ L+ L  G
Sbjct: 410 LDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMG 469

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           RQ+H  + K   + +L +E+ L+DMY+KCG++E+A Q FEF    D VS   I+VG+ Q 
Sbjct: 470 RQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQE 529

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
             E+EA  +F +M+  GI  D   ++++L       +L  G+Q+H  ++KS   +  +  
Sbjct: 530 EDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAG 589

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + LI+MY KCG +E +  VFS M  R+ VS N++IA +A++ +  +A++L++EM+ EG+ 
Sbjct: 590 SSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLN 648

Query: 457 PTDVTFLSLLHACSHVGLVNKGME 480
           P+++TF SLL AC+    +N G +
Sbjct: 649 PSEITFASLLDACTGPYKLNLGRQ 672



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 216/443 (48%), Gaps = 40/443 (9%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++++  Y KC  +  A K F+ +  RD ++WN+++S + R G  +     F  SL+    
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFG-SLQNCGV 178

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             +Q ++ I+LS+C R     + K +HC V   G+E       +LI  Y KCGS    RK
Sbjct: 179 SPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARK 238

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQ 271
           +F  +   + ++WTA+I+G VQ  L EE LK+F  M  LGL+ P+ + +++ + AC GL 
Sbjct: 239 IFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLV-PDQVAFVTVITACVGL- 296

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
                                             G ++DA  +F      + V+  V++ 
Sbjct: 297 ----------------------------------GRLDDACDLFVQMPNTNVVAWNVMIS 322

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  + G + EA+  F  M K G++   + + +VL       +L  G  +H+  IK    S
Sbjct: 323 GHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNS 382

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N +V + LINMY+KC  +E + KVF  +  RN V WN+M+  +A++G   K ++L+ EM+
Sbjct: 383 NVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMR 442

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G  P + T+ S+L AC+ +  +  G + L S    H           +VDM  + G L
Sbjct: 443 GCGFWPDEFTYTSILSACACLECLEMGRQ-LHSFIIKHNFEYNLFVENTLVDMYAKCGAL 501

Query: 512 IEARSFIERMPVKPDVLVWQALL 534
            EAR   E +  + +V  W A++
Sbjct: 502 EEARQQFEFIRNRDNV-SWNAII 523



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 180/373 (48%), Gaps = 37/373 (9%)

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           ++ S  SK IH      G+  +  +G+A++  Y KCG+     K F ++  R+++ W +V
Sbjct: 94  AQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSV 153

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S   +    E+ +  F  +    ++PN  TY   + +C+ L  +  G+Q+H  + K+  
Sbjct: 154 LSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGF 213

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + +   E +L+DMYSKCGS+ DA +IF+   + D VS T ++ G+ Q G  EEA+++F  
Sbjct: 214 EFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFED 273

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M K G+  D      V  V  +   +GLG+                              
Sbjct: 274 MQKLGLVPDQ-----VAFVTVITACVGLGR------------------------------ 298

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L+D+  +F +M   N V+WN MI+   + G   +A++ ++ M   GV+ T  T  S+L A
Sbjct: 299 LDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSA 358

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
            + +  +N G+  + +      ++      + +++M  +   +  A+   + +  + +++
Sbjct: 359 IASLEALNYGL-LVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDER-NLV 416

Query: 529 VWQALLGACSIHG 541
           +W A+LG  + +G
Sbjct: 417 LWNAMLGGYAQNG 429


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 321/563 (57%), Gaps = 28/563 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N+L+  Y KCD   + +K+FD+M  R+ V+WN+++S   + G F+     F R  E
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 269

Query: 149 L-GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                Q DQ +FT +L+ C         + IH  +      + + V   L+  Y +CG  
Sbjct: 270 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRL 329

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  +++F  M  RN  +W ++I G  QN   +E L+LF +M L  I P+  +  S + +C
Sbjct: 330 NYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 389

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE--FAEELDGVS 325
             L    +GR++H  + +  ++ +  ++  L+DMY+KCGS++ AW++++    ++ +   
Sbjct: 390 VSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              IL G+A  G ++E+   F++M+++ IE D   +  ++ +  ++T+L           
Sbjct: 450 WNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETAL----------- 498

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
                         ++MYSKCG +  +  VF  M  +N VSWN+MI+ +++HG   +AL 
Sbjct: 499 --------------VDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALI 544

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           LYEEM  +G+ P +VTFL++L ACSH GLV +G+    SM E + I  +AEHY C+VD++
Sbjct: 545 LYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLL 604

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A+ F+E+MP++P+V  W ALLGAC +H D +MG+ AA++LF   P +P PY+
Sbjct: 605 GRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYV 664

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           +M+NIY+ +GRWKE     + MK  GV K+ G+SWIEI  ++  F    K HP+ + I+ 
Sbjct: 665 IMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYN 724

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L  L       GY+P+  FIL 
Sbjct: 725 NLRHLTLQSKGLGYIPDTSFILQ 747



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 164/583 (28%), Positives = 278/583 (47%), Gaps = 47/583 (8%)

Query: 32  PTSSTSKLVLD-NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           PTS  +K   D N +  S L+        F  G S+H   I         N YN P+A +
Sbjct: 58  PTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI--------SNGYN-PDAYL 108

Query: 91  IWNSLLSFYLKC---DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           +   +L  Y +    D +  A KLF++MP R+  +WNTM+  + R  ++   +G F R L
Sbjct: 109 M-TKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRML 167

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           ++G    D  +F   L  C         K +H  +  CG++ +  VGNALI  Y KC   
Sbjct: 168 KIGVCP-DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE 226

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTYLSSVM 265
            S  KVF EM  RN +TW ++IS   Q   + + L LF++M      I P+  T+ + + 
Sbjct: 227 ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLT 286

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C+  +   +GRQIH  L +  +  ++ +E+ L+ MYS+CG +  A +IF    E +  S
Sbjct: 287 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 346

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G+ QNG  +EA++LF +M   GI+ D   +S++L      +    G+++H+ I+
Sbjct: 347 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 406

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGNGFKA 443
           ++       +   L++MY+KCG ++ + KV+ +     RN+  WNS++A +A  G   ++
Sbjct: 407 RNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKES 466

Query: 444 LELYEEMKLEGVEP---TDVTFLSLL-------HACSHVGLVNKGMEFLKSMTEVHRISP 493
              + EM    +E    T VT ++LL          S  G + K      +M   + +S 
Sbjct: 467 FNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVS- 525

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVK---PDVLVWQALLGACSIHGDSEMGKYAA 550
               +  ++    + G   EA    E MP K   P+ + + A+L ACS  G  E G    
Sbjct: 526 ----WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGL--- 578

Query: 551 EKLFLA-QPD-----SPAPYILMANIYSCSGRWKERAKAIKRM 587
            ++F + Q D         Y  M ++   +GR ++  + +++M
Sbjct: 579 -RIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 620


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 335/608 (55%), Gaps = 23/608 (3%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           + + LL +         G  +H   I       N    NV   T + N     Y KC Q+
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLIT------NSFAANVFAMTGVVN----MYAKCRQI 198

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA------SF 159
            +A K+FD MP RD VSWNT+++GF +NG       F K++LEL     D+       + 
Sbjct: 199 DDAYKMFDRMPERDLVSWNTIIAGFSQNG-------FAKKALELVLRMQDEGQRPDSITL 251

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L A     L +V K IH      G+ + V +  AL   Y KCGS  + R +F  M  
Sbjct: 252 VTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQ 311

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           + V++W +++ G VQN   E+ + +F KM    I+P  +T + ++ AC+ L  L  G+ +
Sbjct: 312 KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV 371

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + +L L SD+ + ++L+ MYSKC  V+ A  IF        VS   +++G+AQNG  
Sbjct: 372 HKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRV 431

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA+  F +M   G++ D   + +V+      +     K IH LII+S    N FV   L
Sbjct: 432 SEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTAL 491

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MYSKCG +  + K+F  ++ R+ ++WN+MI  +  HG G  AL+L+++MK   VEP D
Sbjct: 492 VDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPND 551

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +T+LS++ ACSH GLV++G+   KSM + + + P  +HY  +VD++GRAG + EA  FIE
Sbjct: 552 ITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIE 611

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP+ P + V+ A  GAC IH + E+G+ AA+KLF   PD    ++L+ANIY+ + +W +
Sbjct: 612 NMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSK 671

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            A+  K M++ G+ K  G S +E+  +VHSF      HPQ+  I+  L EL+  +   GY
Sbjct: 672 VAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGY 731

Query: 640 VPNKRFIL 647
           VP+   IL
Sbjct: 732 VPDTNLIL 739



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 246/510 (48%), Gaps = 16/510 (3%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  +    L+S + K   +  A ++F+ +  +    ++TM+ G+ +N   +    F  R 
Sbjct: 79  NEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCR- 137

Query: 147 LELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +     +    +FT +L  C D ++L    K IH  +    +   V     ++  Y KC 
Sbjct: 138 MRYDDVKPVVYNFTYLLKVCGDNADLKR-GKEIHGQLITNSFAANVFAMTGVVNMYAKCR 196

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 K+F  M  R++++W  +I+G  QN   ++ L+L ++M      P+S+T ++ + 
Sbjct: 197 QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLP 256

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A + +  L  G+ IHG   +      + I +AL DMYSKCGSVE A  IF+  ++   VS
Sbjct: 257 AAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVS 316

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSL 383
              ++ G+ QNG  E+A+ +F KM++ G  IDP  V+ +  +        L  GK +H  
Sbjct: 317 WNSMMDGYVQNGEPEKAIAVFEKMLEEG--IDPTGVTIMEALHACADLGDLERGKFVHKF 374

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           + + +  S+  V N LI+MYSKC  ++ +  +F+ +  R  VSWN+MI  +A++G   +A
Sbjct: 375 VDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEA 434

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L  + EMK  G++P   T +S++ A + +  V +  +++  +     +         +VD
Sbjct: 435 LNCFSEMKSLGMKPDSFTMVSVIPALAELS-VTRHAKWIHGLIIRSCLDKNIFVTTALVD 493

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  + G +  AR   + M     V+ W A++     HG   +G+ A +     +  +  P
Sbjct: 494 MYSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEP 549

Query: 564 ----YILMANIYSCSGRWKERAKAIKRMKE 589
               Y+ + +  S SG   E  +  K MK+
Sbjct: 550 NDITYLSVISACSHSGLVDEGLRHFKSMKQ 579



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 160/312 (51%), Gaps = 3/312 (0%)

Query: 170 ELSLVSKMIHCLVYLC---GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           EL    K +H ++ L    G   E      L++ + K GS +   +VF  +  +    + 
Sbjct: 57  ELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYH 116

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++ G  +N   E  L    +M    + P    +   +  C     L  G++IHG L   
Sbjct: 117 TMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN 176

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
           +  +++   + +++MY+KC  ++DA+++F+   E D VS   I+ GF+QNGF ++A++L 
Sbjct: 177 SFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELV 236

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++M   G   D   +  VL        L +GK IH   I++ F     ++  L +MYSKC
Sbjct: 237 LRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKC 296

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +E +  +F  M  +  VSWNSM+  + ++G   KA+ ++E+M  EG++PT VT +  L
Sbjct: 297 GSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEAL 356

Query: 467 HACSHVGLVNKG 478
           HAC+ +G + +G
Sbjct: 357 HACADLGDLERG 368



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 5/192 (2%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           TS+    QI  L+IK+   +       L++++SK G + ++ +VF  +  +    +++M+
Sbjct: 60  TSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTML 119

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             +A++ +   AL     M+ + V+P    F  LL  C     + +G E    +   +  
Sbjct: 120 KGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI-TNSF 178

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           +        VV+M  +   + +A    +RMP + D++ W  ++   S +G     K A E
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPER-DLVSWNTIIAGFSQNG---FAKKALE 234

Query: 552 KLFLAQPDSPAP 563
            +   Q +   P
Sbjct: 235 LVLRMQDEGQRP 246


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 344/623 (55%), Gaps = 20/623 (3%)

Query: 22  SPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQN 81
           S F+ ++ Q   +     +L N    S + + ++       G   HA  IK    +D   
Sbjct: 92  SSFVMELFQRMRADN---ILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYD--- 145

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN---GEFDM 138
                    + +SLL+ Y K   +  A ++FD MP R+ V+W TM+SG+      GE   
Sbjct: 146 -------VFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFE 198

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
            F   +R  E     +++ +FT +LSA    E     K IHCL    G    +++ NAL+
Sbjct: 199 VFELMRREEE----DVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALV 254

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
           T Y KCGS     +VF     +N ITW+A+I+G  Q+    + LKLF +MH   INP+  
Sbjct: 255 TMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEF 314

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T +  + ACS   A+ EG+Q+H  L KL  +S L I +AL+DMY+K G  EDA + F + 
Sbjct: 315 TLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYL 374

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           ++ D V  T ++ G+ QNG  E+A+ L+ +M   GI  +   +++VL       +   G+
Sbjct: 375 QQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGR 434

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           QIH+  IK        + + L  MY+KCG+LE+   VF RM  R+ +SWN+MI+  +++G
Sbjct: 435 QIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNG 494

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            G +ALEL+EEM+ +  +P DVTF+++L ACSH+GLV+ G  + + M +   + P+ EHY
Sbjct: 495 YGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHY 554

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
           AC+VD++ RAG L EA+ FIE   +   + +W+ LLGAC  + + E+G YA EKL     
Sbjct: 555 ACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGS 614

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
              + Y+L++ IY+  GR ++  +    MK  GV KE G SWIE++  VH FVV D+MHP
Sbjct: 615 QESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHP 674

Query: 619 QADTIHGVLAELLRLMIDEGYVP 641
               I   +  L + M DEGY P
Sbjct: 675 CIGEIRTEILRLSKQMKDEGYQP 697



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 150/517 (29%), Positives = 261/517 (50%), Gaps = 21/517 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G +LHA  IK         + +  +   + NSL++FY KC  +  A  +FD +  +D +S
Sbjct: 26  GRALHAQIIK---------LASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVIS 76

Query: 123 WNTMVSGFLRNGEFDMGF--GFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           WN +++G+ + G     F    F+R +       +  +F+ I +A          +  H 
Sbjct: 77  WNCLINGYSQQGPTGSSFVMELFQR-MRADNILPNAHTFSGIFTAASNLSSIFFGQQAHA 135

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +        +V VG++L+  Y K G     R+VF  M  RN +TW  +ISG    +L  E
Sbjct: 136 VAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGE 195

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
             ++F  M     + N   + S + A +  + +  G+QIH +  K  L   L I +AL+ 
Sbjct: 196 AFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVT 255

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+KCGS++D+ Q+FE + + + ++ + ++ G+AQ+G   +A++LF +M  AGI      
Sbjct: 256 MYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFT 315

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +  VL       ++  GKQ+H+ ++K  F S  ++   L++MY+K G  ED+ K F+ + 
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ 375

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             + V W SMIA + ++G    AL LY  M++EG+ P ++T  S+L ACS++   ++G +
Sbjct: 376 QPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQ 435

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            + + T  + +       + +  M  + G L E      RMP + D++ W A++   S +
Sbjct: 436 -IHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPER-DIISWNAMISGLSQN 493

Query: 541 GDSEMGKYAAEKLF--LAQPDSPAPYILMANIYS-CS 574
           G    GK A E LF  + Q D+    +   N+ S CS
Sbjct: 494 G---YGKEALE-LFEEMRQQDTKPDDVTFVNVLSACS 526



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 163/331 (49%), Gaps = 18/331 (5%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD-LCIESALMDMYSKCGSVEDA 311
           ++P +L+  +S++  +  ++L +GR +H  + KLA  S  + + ++L++ Y+KC  +  A
Sbjct: 3   LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKA 62

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEA--MQLFVKMVKAGIEIDPNMVSAVLGVFG 369
             +F+     D +S   ++ G++Q G    +  M+LF +M    I  + +  S +     
Sbjct: 63  KLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAAS 122

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
             +S+  G+Q H++ IK     + FV + L+NMY K G L ++ +VF RM  RN V+W +
Sbjct: 123 NLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWAT 182

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI+ +A      +A E++E M+ E  +  +  F S+L A +         EF+ S  ++H
Sbjct: 183 MISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVP-------EFVDSGKQIH 235

Query: 490 RISPRA------EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            ++ +            +V M  + G L ++    E M    + + W A++   +  GDS
Sbjct: 236 CLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFE-MSNDKNSITWSAMITGYAQSGDS 294

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
                   ++  A  + P+ + L+  + +CS
Sbjct: 295 HKALKLFSRMHFAGIN-PSEFTLVGVLNACS 324


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 329/608 (54%), Gaps = 38/608 (6%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           + F+    +N+Y+       WN+LLS Y K   +    ++F  MP RD VSWN+++S + 
Sbjct: 65  RVFDQMPQRNLYS-------WNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYA 117

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
             G        +   L  G + L++ + + +L    +     +   +H  V   G++  V
Sbjct: 118 GRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYV 177

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNV----------------------------- 222
            VG+ L+  Y K G     R+ F EM  +NV                             
Sbjct: 178 FVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEK 237

Query: 223 --ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
             I+WTA+I+G  QN L  E + LF +M L  +  +  T+ S + AC G+ AL EG+Q+H
Sbjct: 238 DSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH 297

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             + +   Q ++ + SAL+DMY KC S++ A  +F      + VS T +LVG+ QNG+ E
Sbjct: 298 AYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSE 357

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA+++F  M   GIE D   + +V+       SL  G Q H   + S   S   V+N L+
Sbjct: 358 EAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALV 417

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            +Y KCG +EDS ++FS M+  + VSW ++++ +A+ G   + L L+E M   G +P  V
Sbjct: 418 TLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKV 477

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +L ACS  GLV KG +  +SM + HRI P  +HY C++D+  RAG L EAR FI +
Sbjct: 478 TFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINK 537

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP  PD + W +LL +C  H + E+GK+AAE L   +P + A YIL+++IY+  G+W+E 
Sbjct: 538 MPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEV 597

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           A   K M++ G+ KE G SWI+ + QVH F  DD+ +P +D I+  L +L   M+ EGYV
Sbjct: 598 ANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYV 657

Query: 641 PNKRFILH 648
           P+   +LH
Sbjct: 658 PDMNSVLH 665



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 238/476 (50%), Gaps = 49/476 (10%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIK-------------------------TFEPF 77
           N + +S +L +++K+G  HLG  +H   +K                           + F
Sbjct: 141 NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAF 200

Query: 78  DNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD 137
           D     NV    V++N+L++  ++C ++ ++ +LF DM  +D++SW  M++GF +NG   
Sbjct: 201 DEMPEKNV----VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDR 256

Query: 138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL 197
                F R + L   ++DQ +F  +L+AC         K +H  +    Y++ + VG+AL
Sbjct: 257 EAIDLF-REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSAL 315

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           +  Y KC S  S   VF +M  +NV++WTA++ G  QN   EE +K+F  M    I P+ 
Sbjct: 316 VDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDD 375

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
            T  S + +C+ L +L EG Q H       L S + + +AL+ +Y KCGS+ED+ ++F  
Sbjct: 376 FTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSE 435

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL- 376
              +D VS T ++ G+AQ G   E ++LF  M+  G +  P+ V+  +GV    +  GL 
Sbjct: 436 MSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFK--PDKVT-FIGVLSACSRAGLV 492

Query: 377 --GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMI 431
             G QI   +IK +    P  ++   +I+++S+ G LE++ K  ++M    +++ W S++
Sbjct: 493 QKGNQIFESMIK-EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLL 551

Query: 432 AAFARHGN---GFKALELYEEMKLEGVEPTDVTFLSLLHACS----HVGLVNKGME 480
           ++   H N   G  A E    +KLE         LS ++A       V  + KGM 
Sbjct: 552 SSCRFHRNMEIGKWAAE--SLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMR 605



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 116/290 (40%), Gaps = 72/290 (24%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW---------- 427
           K+IH  IIK+      F+ N L++ Y+K   +  + +VF +M  RN  SW          
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 428 ---------------------NSMIAAFARHGNGFKALELYEEMKLEG------VEPTDV 460
                                NS+I+A+A  G   ++++ Y  M   G      +  + +
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARS 516
             L+    C H+GL   G          H +    + Y  V    VDM  + GL+  AR 
Sbjct: 149 LILASKQGCVHLGLQVHG----------HVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 517 FIERMPVKPDVLVWQALLGA---CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
             + MP K +V+++  L+     CS   DS       +  +  Q      +  M   ++ 
Sbjct: 199 AFDEMPEK-NVVMYNTLIAGLMRCSRIEDSR------QLFYDMQEKDSISWTAMIAGFTQ 251

Query: 574 SGRWKERAKAIK--RMKEMGVDKET---------GISWIEIEKQVHSFVV 612
           +G  +E     +  R++ + +D+ T         G+  ++  KQVH++++
Sbjct: 252 NGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYII 301


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/595 (33%), Positives = 334/595 (56%), Gaps = 37/595 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            +  +L++ Y KC ++  A ++F  M  R+ VSW  ++    ++ + +  F  +++ L+ 
Sbjct: 193 AVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQA 252

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    +  +F  +L++C+  E     + IH  +   G E ++ V NALIT Y KC S   
Sbjct: 253 GI-SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQE 311

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-----QLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            R++F  M  R+VI+W+A+I+G  Q+     +  +E  +L  +M    + PN +T++S +
Sbjct: 312 AREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-------- 316
            AC+   AL +GRQIH  L K+  + D  +++A+ +MY+KCGS+ +A Q+F         
Sbjct: 372 RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVV 431

Query: 317 ---------------------FAE--ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
                                F+E    + VS  +++ G+AQNG   +  +L   M   G
Sbjct: 432 AWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEG 491

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
            + D   V  +L   G    L  GK +H+  +K    S+  V   LI MYSKCG + ++ 
Sbjct: 492 FQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEAR 551

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            VF +M+ R++V+WN+M+A + +HG+G +A++L++ M  E V P ++T  +++ ACS  G
Sbjct: 552 TVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAG 611

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV +G E  + M E  +++PR +HY C+VD++GRAG L EA  FI+ MP +PD+ VW AL
Sbjct: 612 LVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHAL 671

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC  H + ++ + AA  +   +P   + YI ++NIY+ +GRW +  K  + M + G+ 
Sbjct: 672 LGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLK 731

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K+ G S IEI+ ++H+FV +D  HP+ D IH  L  L + M + GY P+ RF+LH
Sbjct: 732 KDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLH 786



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/543 (31%), Positives = 282/543 (51%), Gaps = 58/543 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++FY K + + +A ++F  M +RD V+W++M++ +  N      F  F+R  +    
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANI- 153

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++ +F  IL AC+   +    + IH +V   G E +V V  ALIT Y KCG  S   +
Sbjct: 154 EPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  RNV++WTA+I    Q++   E  +L+ +M    I+PN++T++S + +C+  +A
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH  + +  L++D+ + +AL+ MY KC SV++A +IF+   + D +S + ++ G
Sbjct: 274 LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG 333

Query: 333 FAQNGFE-----EEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLII 385
           +AQ+G++     +E  QL  +M + G  + PN V+  ++L       +L  G+QIH+ + 
Sbjct: 334 YAQSGYKDKESIDEVFQLLERMRREG--VFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 386 KSDFTSNPFVNNGLINMYS-------------------------------KCGDLEDSIK 414
           K  F  +  +   + NMY+                               KCGDL  + K
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VFS M  RN VSWN MIA +A++G+  K  EL   MK EG +P  VT +++L AC  +  
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 475 VNKG----MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           + +G     E +K   E   +   +     ++ M  + G + EAR+  ++M  + D + W
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATS-----LIGMYSKCGQVAEARTVFDKMSNR-DTVAW 565

Query: 531 QALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKR 586
            A+L     HGD   G  A +  K  L +  SP    L A I +CS  G  +E  +  + 
Sbjct: 566 NAMLAGYGQHGD---GLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRM 622

Query: 587 MKE 589
           M+E
Sbjct: 623 MQE 625



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 223/412 (54%), Gaps = 15/412 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           ++  ++  ++  C ++      KM+H  +   G E ++ +GN+LI  Y K    +S  +V
Sbjct: 54  VNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQV 113

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M +R+V+TW+++I+    N    +    F +M    I PN +T+LS + AC+    L
Sbjct: 114 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSIL 173

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +GR+IH I+  + +++D+ + +AL+ MYSKCG +  A ++F    E + VS T I+   
Sbjct: 174 EKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQAN 233

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           AQ+    EA +L+ +M++AG  I PN V+  ++L       +L  G++IHS I +    +
Sbjct: 234 AQHRKLNEAFELYEQMLQAG--ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 291

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK-----ALEL 446
           +  V N LI MY KC  ++++ ++F RM+ R+ +SW++MIA +A+ G   K       +L
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            E M+ EGV P  VTF+S+L AC+  G + +G +    +++V     R+   A + +M  
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA-IFNMYA 410

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
           + G + EA     +M  K +V+ W + L      GD      +AEK+F   P
Sbjct: 411 KCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLS----SAEKVFSEMP 457



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 173/339 (51%), Gaps = 11/339 (3%)

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G +S+G+++ G   V     W    +G ++  +   G+   +K    L+N N  TY   +
Sbjct: 9   GFASTGKELDGPTSVSGGEVWRLCKAGRLREAIQLLGI---IKQRGLLVNSN--TYGCVI 63

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             C+  +   +G+ +H  L +L ++ D+ + ++L++ YSK   V  A Q+F      D V
Sbjct: 64  EHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVV 123

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHS 382
           + + ++  +A N    +A   F +M  A IE  PN ++  ++L      + L  G++IH+
Sbjct: 124 TWSSMIAAYAGNNHPAKAFDTFERMTDANIE--PNRITFLSILKACNNYSILEKGRKIHT 181

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
           ++      ++  V   LI MYSKCG++  + +VF +M  RN VSW ++I A A+H    +
Sbjct: 182 IVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNE 241

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           A ELYE+M   G+ P  VTF+SLL++C+    +N+G      ++E    +      A ++
Sbjct: 242 AFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANA-LI 300

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            M  +   + EAR   +RM  K DV+ W A++   +  G
Sbjct: 301 TMYCKCNSVQEAREIFDRMS-KRDVISWSAMIAGYAQSG 338



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+  SL+  Y KC Q+  A  +FD M  RDTV+WN M++G+ ++G+       FKR L+
Sbjct: 531 TVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLK 590

Query: 149 LGFYQLDQASFTIILSACDRSEL 171
                 ++ + T ++SAC R+ L
Sbjct: 591 ERV-SPNEITLTAVISACSRAGL 612


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 336/596 (56%), Gaps = 11/596 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ L+   + +G    G  LHA   K     +N+          I  +LL+ Y KC  + 
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNNK----------IEGALLNLYAKCADIE 441

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A+  F +  + + V WN M+  +    +    F  F R +++     +Q ++  IL  C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF-RQMQIEEIVPNQYTYPSILKTC 500

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            R     + + IH  +    ++    V + LI  Y K G   +   +      ++V++WT
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I+G  Q    ++ L  F +M    I  + +   ++V AC+GLQAL EG+QIH      
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              SDL  ++AL+ +YS+CG +E+++  FE  E  D ++   ++ GF Q+G  EEA+++F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           V+M + GI+ +     + +       ++  GKQ+H++I K+ + S   V N LI+MY+KC
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G + D+ K F  ++ +N VSWN++I A+++HG G +AL+ +++M    V P  VT + +L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH+GLV+KG+ + +SM   + +SP+ EHY CVVDM+ RAGLL  A+ FI+ MP+KPD
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            LVW+ LL AC +H + E+G++AA  L   +P+  A Y+L++N+Y+ S +W  R    ++
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           MKE GV KE G SWIE++  +HSF V D+ HP AD IH    +L +   + GYV +
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 225/445 (50%), Gaps = 8/445 (1%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L  FYL    +  A K+FD+MP R   +WN M+            FG F R +       
Sbjct: 126 LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTP- 184

Query: 155 DQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           ++ +F+ +L AC    ++  V + IH  +   G  +   V N LI  Y + G     R+V
Sbjct: 185 NEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV 244

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +R+++  +W A+ISGL +N+   E ++LF  M++  I P    + S + AC  +++L
Sbjct: 245 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 304

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G Q+HG++ KL   SD  + +AL+ +Y   G++  A  IF    + D V+   ++ G 
Sbjct: 305 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 364

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           +Q G+ E+AM+LF +M   G+E D N +++++     D +L  G+Q+H+   K  F SN 
Sbjct: 365 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 424

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            +   L+N+Y+KC D+E ++  F      N V WN M+ A+    +   +  ++ +M++E
Sbjct: 425 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 484

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLL 511
            + P   T+ S+L  C  +G +  G +     +++ + + +   Y C  ++DM  + G L
Sbjct: 485 EIVPNQYTYPSILKTCIRLGDLELGEQI---HSQIIKTNFQLNAYVCSVLIDMYAKLGKL 541

Query: 512 IEARSFIERMPVKPDVLVWQALLGA 536
             A   + R   K DV+ W  ++  
Sbjct: 542 DTAWDILIRFAGK-DVVSWTTMIAG 565



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 233/500 (46%), Gaps = 25/500 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS   K     +G  LH   +K              + T + N+L+S Y     + +
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLK----------LGFSSDTYVCNALVSLYFHLGNLIS 341

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +F +M  RD V++NT+++G  + G  +     FKR + L   + D  +   ++ AC 
Sbjct: 342 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR-MHLDGLEPDSNTLASLVVACS 400

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   + +H      G+     +  AL+  Y KC    +    F E  V NV+ W  
Sbjct: 401 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 460

Query: 228 --VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             V  GL+ +       ++F +M +  I PN  TY S +  C  L  L  G QIH  + K
Sbjct: 461 MLVAYGLLDD--LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 518

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
              Q +  + S L+DMY+K G ++ AW I       D VS T ++ G+ Q  F+++A+  
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 578

Query: 346 FVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           F +M+  GI  D     N VSA  G+     +L  G+QIH+    S F+S+    N L+ 
Sbjct: 579 FRQMLDRGIRSDEVGLTNAVSACAGL----QALKEGQQIHAQACVSGFSSDLPFQNALVT 634

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           +YS+CG +E+S   F +    ++++WN++++ F + GN  +AL ++  M  EG++  + T
Sbjct: 635 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 694

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S + A S    + +G +    +T+    S   E    ++ M  + G + +A      +
Sbjct: 695 FGSAVKAASETANMKQGKQVHAVITKTGYDS-ETEVCNALISMYAKCGSISDAEKQFLEV 753

Query: 522 PVKPDVLVWQALLGACSIHG 541
             K +V  W A++ A S HG
Sbjct: 754 STKNEV-SWNAIINAYSKHG 772



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 231/460 (50%), Gaps = 7/460 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           ++TV+ N L+  Y +   +  A ++FD + ++D  SW  M+SG  +N         F   
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 279

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             LG      A F+ +LSAC + E   + + +H LV   G+  +  V NAL++ YF  G+
Sbjct: 280 YVLGIMPTPYA-FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 338

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             S   +F  M  R+ +T+  +I+GL Q    E+ ++LF +MHL  + P+S T  S V+A
Sbjct: 339 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 398

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS    L  G+Q+H    KL   S+  IE AL+++Y+KC  +E A   F   E  + V  
Sbjct: 399 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 458

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
            V+LV +        + ++F +M     EI PN  +  ++L        L LG+QIHS I
Sbjct: 459 NVMLVAYGLLDDLRNSFRIFRQMQIE--EIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 516

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK++F  N +V + LI+MY+K G L+ +  +  R A ++ VSW +MIA + ++    KAL
Sbjct: 517 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 576

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + +M   G+   +V   + + AC+ +  + +G + + +   V   S        +V +
Sbjct: 577 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTL 635

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             R G + E+    E+     D + W AL+      G++E
Sbjct: 636 YSRCGKIEESYLAFEQTEA-GDNIAWNALVSGFQQSGNNE 674



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 168/329 (51%), Gaps = 2/329 (0%)

Query: 162 ILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           +L  C ++  SL   + +H  +   G +    +   L   Y   G      KVF EM  R
Sbjct: 90  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 149

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQI 279
            + TW  +I  L    L  E   LFV+M    + PN  T+   + AC G   A     QI
Sbjct: 150 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 209

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  +    L+    + + L+D+YS+ G V+ A ++F+     D  S   ++ G ++N  E
Sbjct: 210 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 269

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA++LF  M   GI   P   S+VL       SL +G+Q+H L++K  F+S+ +V N L
Sbjct: 270 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 329

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +++Y   G+L  +  +FS M+ R++V++N++I   ++ G G KA+EL++ M L+G+EP  
Sbjct: 330 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 389

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
            T  SL+ ACS  G + +G +     T++
Sbjct: 390 NTLASLVVACSADGTLFRGQQLHAYTTKL 418



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 206/440 (46%), Gaps = 26/440 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ N      +L    + G   LG  +H+  IKT          N      + + L+  Y
Sbjct: 486 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT----------NFQLNAYVCSVLIDMY 535

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K  ++  A  +      +D VSW TM++G+ +    D     F++ L+ G  + D+   
Sbjct: 536 AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGL 594

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T  +SAC   +     + IH    + G+  ++   NAL+T Y +CG        F +   
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 654

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            + I W A++SG  Q+   EE L++FV+M+   I+ N+ T+ S+V A S    + +G+Q+
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 714

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H ++ K    S+  + +AL+ MY+KCGS+ DA + F      + VS   I+  ++++GF 
Sbjct: 715 HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFG 774

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFV 395
            EA+  F +M+ + +   PN V+ V GV    + +GL  +      S+  +   +  P  
Sbjct: 775 SEALDSFDQMIHSNVR--PNHVTLV-GVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEH 831

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN----GFKALELYEEM 450
              +++M ++ G L  + +    M  + +++ W ++++A   H N     F A  L E  
Sbjct: 832 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE-- 889

Query: 451 KLEGVEPTDVTFLSLLHACS 470
            LE  +      LS L+A S
Sbjct: 890 -LEPEDSATYVLLSNLYAVS 908



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
           G    + SL  G+++HS I+K    SN  ++  L + Y   GDL  + KVF  M  R   
Sbjct: 93  GCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF 152

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           +WN MI   A      +   L+  M  E V P + TF  +L AC    +    +E + + 
Sbjct: 153 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 212

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
                +         ++D+  R G +  AR   + + +K D   W A++   S
Sbjct: 213 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-DHSSWVAMISGLS 264


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 336/596 (56%), Gaps = 11/596 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ L+   + +G    G  LHA   K     +N+          I  +LL+ Y KC  + 
Sbjct: 352 LASLVVACSADGTLFRGQQLHAYTTKLGFASNNK----------IEGALLNLYAKCADIE 401

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A+  F +  + + V WN M+  +    +    F  F R +++     +Q ++  IL  C
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF-RQMQIEEIVPNQYTYPSILKTC 460

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            R     + + IH  +    ++    V + LI  Y K G   +   +      ++V++WT
Sbjct: 461 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 520

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I+G  Q    ++ L  F +M    I  + +   ++V AC+GLQAL EG+QIH      
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              SDL  ++AL+ +YS+CG +E+++  FE  E  D ++   ++ GF Q+G  EEA+++F
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 640

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           V+M + GI+ +     + +       ++  GKQ+H++I K+ + S   V N LI+MY+KC
Sbjct: 641 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 700

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G + D+ K F  ++ +N VSWN++I A+++HG G +AL+ +++M    V P  VT + +L
Sbjct: 701 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 760

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH+GLV+KG+ + +SM   + +SP+ EHY CVVDM+ RAGLL  A+ FI+ MP+KPD
Sbjct: 761 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 820

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            LVW+ LL AC +H + E+G++AA  L   +P+  A Y+L++N+Y+ S +W  R    ++
Sbjct: 821 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 880

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           MKE GV KE G SWIE++  +HSF V D+ HP AD IH    +L +   + GYV +
Sbjct: 881 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 936



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 225/445 (50%), Gaps = 8/445 (1%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L  FYL    +  A K+FD+MP R   +WN M+            FG F R +       
Sbjct: 86  LFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTP- 144

Query: 155 DQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           ++ +F+ +L AC    ++  V + IH  +   G  +   V N LI  Y + G     R+V
Sbjct: 145 NEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRV 204

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +R+++  +W A+ISGL +N+   E ++LF  M++  I P    + S + AC  +++L
Sbjct: 205 FDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESL 264

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G Q+HG++ KL   SD  + +AL+ +Y   G++  A  IF    + D V+   ++ G 
Sbjct: 265 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGL 324

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           +Q G+ E+AM+LF +M   G+E D N +++++     D +L  G+Q+H+   K  F SN 
Sbjct: 325 SQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNN 384

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            +   L+N+Y+KC D+E ++  F      N V WN M+ A+    +   +  ++ +M++E
Sbjct: 385 KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIE 444

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLL 511
            + P   T+ S+L  C  +G +  G +     +++ + + +   Y C  ++DM  + G L
Sbjct: 445 EIVPNQYTYPSILKTCIRLGDLELGEQI---HSQIIKTNFQLNAYVCSVLIDMYAKLGKL 501

Query: 512 IEARSFIERMPVKPDVLVWQALLGA 536
             A   + R   K DV+ W  ++  
Sbjct: 502 DTAWDILIRFAGK-DVVSWTTMIAG 525



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 233/500 (46%), Gaps = 25/500 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS   K     +G  LH   +K              + T + N+L+S Y     + +
Sbjct: 252 SSVLSACKKIESLEIGEQLHGLVLK----------LGFSSDTYVCNALVSLYFHLGNLIS 301

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +F +M  RD V++NT+++G  + G  +     FKR + L   + D  +   ++ AC 
Sbjct: 302 AEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR-MHLDGLEPDSNTLASLVVACS 360

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   + +H      G+     +  AL+  Y KC    +    F E  V NV+ W  
Sbjct: 361 ADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNV 420

Query: 228 --VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             V  GL+ +       ++F +M +  I PN  TY S +  C  L  L  G QIH  + K
Sbjct: 421 MLVAYGLLDD--LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK 478

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
              Q +  + S L+DMY+K G ++ AW I       D VS T ++ G+ Q  F+++A+  
Sbjct: 479 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 538

Query: 346 FVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           F +M+  GI  D     N VSA  G+     +L  G+QIH+    S F+S+    N L+ 
Sbjct: 539 FRQMLDRGIRSDEVGLTNAVSACAGL----QALKEGQQIHAQACVSGFSSDLPFQNALVT 594

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           +YS+CG +E+S   F +    ++++WN++++ F + GN  +AL ++  M  EG++  + T
Sbjct: 595 LYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFT 654

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S + A S    + +G +    +T+    S   E    ++ M  + G + +A      +
Sbjct: 655 FGSAVKAASETANMKQGKQVHAVITKTGYDS-ETEVCNALISMYAKCGSISDAEKQFLEV 713

Query: 522 PVKPDVLVWQALLGACSIHG 541
             K +V  W A++ A S HG
Sbjct: 714 STKNEV-SWNAIINAYSKHG 732



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 231/460 (50%), Gaps = 7/460 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           ++TV+ N L+  Y +   +  A ++FD + ++D  SW  M+SG  +N         F   
Sbjct: 180 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDM 239

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             LG      A F+ +LSAC + E   + + +H LV   G+  +  V NAL++ YF  G+
Sbjct: 240 YVLGIMPTPYA-FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGN 298

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             S   +F  M  R+ +T+  +I+GL Q    E+ ++LF +MHL  + P+S T  S V+A
Sbjct: 299 LISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVA 358

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS    L  G+Q+H    KL   S+  IE AL+++Y+KC  +E A   F   E  + V  
Sbjct: 359 CSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLW 418

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
            V+LV +        + ++F +M     EI PN  +  ++L        L LG+QIHS I
Sbjct: 419 NVMLVAYGLLDDLRNSFRIFRQMQIE--EIVPNQYTYPSILKTCIRLGDLELGEQIHSQI 476

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK++F  N +V + LI+MY+K G L+ +  +  R A ++ VSW +MIA + ++    KAL
Sbjct: 477 IKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKAL 536

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + +M   G+   +V   + + AC+ +  + +G + + +   V   S        +V +
Sbjct: 537 TTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ-IHAQACVSGFSSDLPFQNALVTL 595

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             R G + E+    E+     D + W AL+      G++E
Sbjct: 596 YSRCGKIEESYLAFEQTEA-GDNIAWNALVSGFQQSGNNE 634



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 168/329 (51%), Gaps = 2/329 (0%)

Query: 162 ILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           +L  C ++  SL   + +H  +   G +    +   L   Y   G      KVF EM  R
Sbjct: 50  LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPER 109

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQI 279
            + TW  +I  L    L  E   LFV+M    + PN  T+   + AC G   A     QI
Sbjct: 110 TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQI 169

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  +    L+    + + L+D+YS+ G V+ A ++F+     D  S   ++ G ++N  E
Sbjct: 170 HARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECE 229

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA++LF  M   GI   P   S+VL       SL +G+Q+H L++K  F+S+ +V N L
Sbjct: 230 AEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNAL 289

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +++Y   G+L  +  +FS M+ R++V++N++I   ++ G G KA+EL++ M L+G+EP  
Sbjct: 290 VSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDS 349

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
            T  SL+ ACS  G + +G +     T++
Sbjct: 350 NTLASLVVACSADGTLFRGQQLHAYTTKL 378



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/440 (25%), Positives = 206/440 (46%), Gaps = 26/440 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ N      +L    + G   LG  +H+  IKT          N      + + L+  Y
Sbjct: 446 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT----------NFQLNAYVCSVLIDMY 495

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K  ++  A  +      +D VSW TM++G+ +    D     F++ L+ G  + D+   
Sbjct: 496 AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGL 554

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T  +SAC   +     + IH    + G+  ++   NAL+T Y +CG        F +   
Sbjct: 555 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 614

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            + I W A++SG  Q+   EE L++FV+M+   I+ N+ T+ S+V A S    + +G+Q+
Sbjct: 615 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 674

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H ++ K    S+  + +AL+ MY+KCGS+ DA + F      + VS   I+  ++++GF 
Sbjct: 675 HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFG 734

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFV 395
            EA+  F +M+ + +   PN V+ V GV    + +GL  +      S+  +   +  P  
Sbjct: 735 SEALDSFDQMIHSNVR--PNHVTLV-GVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEH 791

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN----GFKALELYEEM 450
              +++M ++ G L  + +    M  + +++ W ++++A   H N     F A  L E  
Sbjct: 792 YVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLE-- 849

Query: 451 KLEGVEPTDVTFLSLLHACS 470
            LE  +      LS L+A S
Sbjct: 850 -LEPEDSATYVLLSNLYAVS 868



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 1/173 (0%)

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
           G    + SL  G+++HS I+K    SN  ++  L + Y   GDL  + KVF  M  R   
Sbjct: 53  GCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIF 112

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           +WN MI   A      +   L+  M  E V P + TF  +L AC    +    +E + + 
Sbjct: 113 TWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHAR 172

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
                +         ++D+  R G +  AR   + + +K D   W A++   S
Sbjct: 173 ILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK-DHSSWVAMISGLS 224


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/608 (36%), Positives = 334/608 (54%), Gaps = 46/608 (7%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K F+    +N ++       WN++L    K   +  A+ LF  MP RD  SWN MVSGF 
Sbjct: 75  KVFDHMQQRNTFS-------WNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFA 127

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           +   F+    F        F  L++ SF   LSAC       +   IH L+    Y  +V
Sbjct: 128 QRDRFEEALRFVVDMHSEDFV-LNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDV 186

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            +G+AL+  Y KC   +S ++ F +M VRN+++W ++I+   QN    + L++FV+M   
Sbjct: 187 YMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNC 246

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVED 310
            I P+ +T  S   AC+ L A+ EG QIH  + K    ++DL + +AL+DMY+KC  V +
Sbjct: 247 GIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNE 306

Query: 311 AWQIFE----------------FAE---------------ELDGVSMTVILVGFAQNGFE 339
           A  +F+                +A+               E + VS   ++ G+ QNG  
Sbjct: 307 ARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGEN 366

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF------TSNP 393
           EEA++LF+ + +  I         +L        L LG+Q H+ I+K  F       S+ 
Sbjct: 367 EEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDI 426

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV N LI+MY KCG +ED   VF RM  R++VSWN+MI  +A++G G +ALE++ EM + 
Sbjct: 427 FVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVS 486

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  P  VT + +L ACSH GLV +G  + +SMT  H + P  +HY C+VD++GRAG L E
Sbjct: 487 GERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDE 546

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A + I+ MP++PD +VW +LL AC +HG+  +GKY AE+L    P +  PY+L++N+Y+ 
Sbjct: 547 ANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAE 606

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
            GRWK+  +  K+M++MGV K+ G SWI I+  +H F+V DK HP    I+ +L  L   
Sbjct: 607 LGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQ 666

Query: 634 MIDEGYVP 641
           M   GYVP
Sbjct: 667 MKRVGYVP 674



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 133/494 (26%), Positives = 225/494 (45%), Gaps = 80/494 (16%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           LD + F  +L  C +S+    ++++H  +    +  E+ + N L+  Y KCG     RKV
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 214 FGEMRVRNVITWTAV-------------------------------ISGLVQNQLYEEGL 242
           F  M+ RN  +W AV                               +SG  Q   +EE L
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +  V MH      N  ++ S++ AC+GL  L  G QIHG++ K     D+ + SAL+DMY
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMY 196

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           SKC  V  A + F+  +  + VS   ++  + QNG   +A+++FV+M+  GIE D   ++
Sbjct: 197 SKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLA 256

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVFSRMA- 420
           +V       +++  G QIH+ ++K D   N  V  N L++MY+KC  + ++  VF RM  
Sbjct: 257 SVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPL 316

Query: 421 ------------------------------PRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                                          RN VSWN++IA + ++G   +A+ L+  +
Sbjct: 317 RDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLL 376

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMV 505
           K E + PT  TF +LL+AC+++  +  G +    + +        E         ++DM 
Sbjct: 377 KRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMY 436

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL-----FLAQPDS 560
            + GL+ + R   ERM ++ D + W A++   + +G      Y  E L      L   + 
Sbjct: 437 MKCGLVEDGRLVFERM-LERDNVSWNAMIVGYAQNG------YGTEALEIFREMLVSGER 489

Query: 561 PAPYILMANIYSCS 574
           P    ++  + +CS
Sbjct: 490 PDHVTMIGVLSACS 503


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/609 (34%), Positives = 338/609 (55%), Gaps = 39/609 (6%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K F+   + N+Y+       WN++LS Y K  ++     LFD MP RD VSWN+++SG+ 
Sbjct: 65  KVFDQMPHPNLYS-------WNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYA 117

Query: 132 RNGEFDMGFGFFKRSLEL-GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
             G        +   L+  G + L++ +F+ +L    +     + + IH  V   G+   
Sbjct: 118 GCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSY 177

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGE-------------------------------MRV 219
           V VG+ L+  Y K G  S  RKVF E                               MR 
Sbjct: 178 VFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRE 237

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+ I+WT++I+G  QN L  + + +F +M L  +  +  T+ S + AC G+ AL EG+Q+
Sbjct: 238 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + +   + ++ + SAL+DMY KC +++ A  +F+     + VS T +LVG+ QNG+ 
Sbjct: 298 HAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYS 357

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++ F  M K GIE D   + +V+       SL  G Q H+  + S   S   V+N L
Sbjct: 358 EEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNAL 417

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           + +Y KCG +EDS ++F+ ++ ++ V+W ++++ +A+ G   + + L+E M   G++P  
Sbjct: 418 VTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDK 477

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VTF+ +L ACS  GLV KG +  +SM   H I P  +HY C++D+  RAG + EAR+FI 
Sbjct: 478 VTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFIN 537

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
           +MP  PD + W  LL +C  +G+ ++GK+AAE L    P + A Y+L++++Y+  G+W+E
Sbjct: 538 KMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEE 597

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            A+  K M++ G+ KE G SWI+ + QVH F  DDK +P +D I+  L +L   MI EGY
Sbjct: 598 VARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGY 657

Query: 640 VPNKRFILH 648
           VP+   +LH
Sbjct: 658 VPDMNSVLH 666



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 63/287 (21%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
            K +HS IIK+      F+ N LI+ Y+K G +  + KVF +M   N  SWN++++A+++
Sbjct: 28  AKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSK 87

Query: 437 HGNGFKALELYEEM-KLEGV--------------------------------EPTDVTFL 463
            G   +   L++ M + +GV                                    +TF 
Sbjct: 88  LGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFS 147

Query: 464 SLLHACSHVGLVNKGMEF------LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
           +LL   S  G V  G +          M+ V   SP       +VDM  + G++  AR  
Sbjct: 148 TLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP-------LVDMYSKMGMISCARKV 200

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-PYILMANIYSCSGR 576
            + +P K +V+++  L+      G  E  K    +LF    +  +  +  M   ++ +G 
Sbjct: 201 FDELPEK-NVVMYNTLIMGLMRCGRVEDSK----RLFFEMRERDSISWTSMITGFTQNGL 255

Query: 577 WKERAKAIKRMK--EMGVDKET---------GISWIEIEKQVHSFVV 612
            ++     + MK   + +D+ T         G+  ++  KQVH++++
Sbjct: 256 DRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYII 302


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 325/557 (58%), Gaps = 2/557 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y KC  + +A  +FD M  RD +SWN M+ G  +NG     F  F +  + G
Sbjct: 271 VGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEG 330

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F   D  ++  +L+    +      K +H      G   ++ VG+A +  Y +CGS    
Sbjct: 331 FVP-DSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + +F ++ VRNV TW A+I G+ Q +   E L LF++M      P++ T+++ + A  G 
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGE 449

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +AL   +++H       L  DL + +AL+ MY+KCG+   A Q+F+   E +  + TV++
Sbjct: 450 EALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQ+G   EA  LF++M++ GI  D     ++L       +L   K++HS  + +   
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V N L++MY+KCG ++D+ +VF  M  R+  SW  MI   A+HG G  AL+L+ +M
Sbjct: 569 SDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKM 628

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           KLEG +P   +F+++L ACSH GLV++G     S+T+ + I P  EHY C+VD++GRAG 
Sbjct: 629 KLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA+ FI  MP++P    W ALLGAC  +G+ EM ++AA++    +P S + Y+L++NI
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 748

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G W+++      M+  G+ KE G SWIE++ Q+HSFVV D  HP++  I+  L +L
Sbjct: 749 YAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDL 808

Query: 631 LRLMIDEGYVPNKRFIL 647
           ++ +  EGYVP+ R +L
Sbjct: 809 IKRLKAEGYVPDTRLVL 825



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/459 (31%), Positives = 229/459 (49%), Gaps = 18/459 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y K   + +A  +FD M  RD  SW  M+ G  ++G     F  F + +E G
Sbjct: 168 VGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQ-MERG 226

Query: 151 FYQLDQASFTIILSACDRSELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               +  ++  IL+A   +    +   K +H      G+  ++ VGNALI  Y KCGS  
Sbjct: 227 GCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSID 286

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R VF  M  R+VI+W A+I GL QN    E   +F+KM      P+S TYLS +    
Sbjct: 287 DARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHV 346

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              A    +++H    ++ L SDL + SA + MY +CGS++DA  IF+     +  +   
Sbjct: 347 STGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNA 406

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G AQ     EA+ LF++M + G   D      +L     + +L   K++HS  I + 
Sbjct: 407 MIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAG 466

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              +  V N L++MY+KCG+   + +VF  M  RN  +W  MI+  A+HG G +A  L+ 
Sbjct: 467 LV-DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFL 525

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVV 502
           +M  EG+ P   T++S+L AC+  G     +E++K   EVH  +  A   +       +V
Sbjct: 526 QMLREGIVPDATTYVSILSACASTG----ALEWVK---EVHSHAVNAGLVSDLRVGNALV 578

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            M  + G + +AR   + M ++ DV  W  ++G  + HG
Sbjct: 579 HMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHG 616



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 224/456 (49%), Gaps = 16/456 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +L++ Y+KC  + +A  +FD M  R+ +SW  M+ G    G     F  F +    GF 
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                  +I+ +      L  V K +H      G   ++ VGNAL+  Y K GS    R 
Sbjct: 129 PNSYTYVSILNANASAGALEWV-KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARV 187

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS--SVMACSGL 270
           VF  M  R++ +WT +I GL Q+   +E   LF++M  G   PN  TYLS  +  A +  
Sbjct: 188 VFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITST 247

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL   +++H    K    SDL + +AL+ MY+KCGS++DA  +F+   + D +S   ++
Sbjct: 248 GALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMI 307

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQNG   EA  +F+KM + G   D     ++L       +    K++H   ++    
Sbjct: 308 GGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV 367

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V +  ++MY +CG ++D+  +F ++A RN  +WN+MI   A+   G +AL L+ +M
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-----EHYACVVDMV 505
           + EG  P   TF+++L A       N G E L+ + EVH  +  A          +V M 
Sbjct: 428 RREGFFPDATTFVNILSA-------NVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMY 480

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + G  + A+   + M V+ +V  W  ++   + HG
Sbjct: 481 AKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHG 515



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 48/500 (9%)

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV-SKMIHCLVYL 184
           M+ G+   G  +     + +    G  Q ++ ++  IL AC  S +SL   K IH  +  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACC-SPVSLKWGKKIHAHIIQ 58

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G++ +V V  AL+  Y KCGS    + +F +M  RNVI+WT +I GL      +E    
Sbjct: 59  SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F++M      PNS TY+S + A +   AL   +++H       L  DL + +AL+ MY+K
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAK 178

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS-- 362
            GS++DA  +F+   E D  S TV++ G AQ+G  +EA  LF++M + G    PN+ +  
Sbjct: 179 SGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL--PNLTTYL 236

Query: 363 AVLGVFGVDTSLGLG--KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           ++L    + ++  L   K++H    K+ F S+  V N LI+MY+KCG ++D+  VF  M 
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ +SWN+MI   A++G G +A  ++ +M+ EG  P   T+LSLL+     G      E
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             K   EV  +S      A  V M  R G + +A+   +++ V+ +V  W A++G  +  
Sbjct: 357 VHKHAVEVGLVSDLRVGSA-FVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVA-- 412

Query: 541 GDSEMGKYAAEKLFLAQ------PDSPA-PYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
              + G+ A   LFL        PD+     IL AN+                       
Sbjct: 413 -QQKCGREAL-SLFLQMRREGFFPDATTFVNILSANV----------------------- 447

Query: 594 KETGISWIEIEKQVHSFVVD 613
            E  + W+   K+VHS+ +D
Sbjct: 448 GEEALEWV---KEVHSYAID 464


>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 736

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 325/552 (58%), Gaps = 1/552 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   +  +LL+ Y K   + +A ++FD M  R+ VSW  MVSG+      +  F  F+  
Sbjct: 156 NNVFVSTALLNMYCKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLM 215

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           L+    + ++   T +LSA       L+   +H LV   G    V+V N+L+T Y K   
Sbjct: 216 LQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAEC 275

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             +  +VFG  + RN ITW+A+I+G  QN       ++F++MH     P   T++  + A
Sbjct: 276 MDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNA 335

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS + AL  G+Q H ++ KL  ++ + ++SAL+DMY+KCG + DA   F    ++D V +
Sbjct: 336 CSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVL 395

Query: 327 -TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T ++ G  QNG  EEA+ L+ +M K GI      V++VL       +L LGKQ+H+ I+
Sbjct: 396 WTAMITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQIL 455

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F+    V   L  MYSKCG+LEDS+ VF RM  R+ +SWNS+I+ F++HG G  AL+
Sbjct: 456 KCRFSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALD 515

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++EEMKLEG  P  +TF++LL ACSH+GLV++G  + ++MT+ + + P  +HYAC+VD++
Sbjct: 516 MFEEMKLEGTAPDHITFINLLSACSHMGLVDRGWFYFRAMTKDYNLIPTLDHYACMVDIL 575

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            RAG L EA+ FI+ + +     +W+ +LGAC    D ++G YA E+L     +  + YI
Sbjct: 576 SRAGQLKEAKDFIDSITIDHGTCLWRIVLGACRSLRDFDVGAYAGEQLMELGTEDSSAYI 635

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++NIY+   +W +  +    M+  GV K+ G SW+E+  +VH FVV ++ HP+A+ I+ 
Sbjct: 636 LLSNIYAAQRKWNDVERVRHLMRLRGVSKDLGCSWVELYNRVHVFVVGEQQHPEAENINV 695

Query: 626 VLAELLRLMIDE 637
            L  L + M DE
Sbjct: 696 ELIRLAKHMKDE 707



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 224/462 (48%), Gaps = 15/462 (3%)

Query: 91  IWNSLLSFYLKCDQ--MRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           + NSL++FY    +  +  A  +F D+P  +RD  SWN++++   R+         F+  
Sbjct: 51  VSNSLITFYCSLPRPLLGAAYVVFADIPAALRDVASWNSLLNPLSRHHPVS-ALSHFRSM 109

Query: 147 LELGFYQLDQA-SFTIILSACDRSELSLVSKMIHCLV----YLCGYEEEVTVGNALITSY 201
           +      L    SF    +A  R   +    + H L       CG    V V  AL+  Y
Sbjct: 110 MSSPEAVLPSPHSFAAAFTAAARVPSASAGAVTHALACKLPSSCG-SNNVFVSTALLNMY 168

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLTY 260
            K G+ S  ++VF  M  RN ++W A++SG    +  EE  +LF + +    +  N    
Sbjct: 169 CKLGAVSDAKRVFDGMLHRNAVSWAAMVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVT 228

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            + + A S    L  G Q+HG++ K  L   + +E++L+ MY+K   ++ A ++F  ++E
Sbjct: 229 TAVLSAVSVPLGLLMGTQLHGLVLKDGLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKE 288

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            + ++ + ++ G+AQNG    A ++F++M  +G          VL       +L +GKQ 
Sbjct: 289 RNSITWSAMITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQT 348

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           H L++K  F +  +V + L++MY+KCG + D+   F ++   + V  W +MI    ++G 
Sbjct: 349 HCLMVKLGFETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGE 408

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +AL LY  M  +G+ P+ +T  S+L AC+ +  ++ G +    + +  R S       
Sbjct: 409 HEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKC-RFSLGGSVGT 467

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +  M  + G L ++     RMP + DV+ W +++   S HG
Sbjct: 468 ALSTMYSKCGNLEDSMVVFRRMPDR-DVISWNSIISVFSQHG 508


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/562 (38%), Positives = 327/562 (58%), Gaps = 10/562 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T  WNSL+S   K   +  A +LF  MP  D  SWN+MVSGF ++  F+    +F +   
Sbjct: 81  TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR 140

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             F  L++ SF   LSAC       +   +H LV    Y  +V +G+ALI  Y KCGS +
Sbjct: 141 EDFL-LNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              +VF  M  RN++TW ++I+   QN    E L++FV+M    + P+ +T  S V AC+
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259

Query: 269 GLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            L AL EG QIH  + K    + DL + +AL+DMY+KC  V +A ++F+     + VS T
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSET 319

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI-HSLIIK 386
            ++ G+A+    + A  +F KM +  +     +++        + +L L + +    I  
Sbjct: 320 SMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWP 379

Query: 387 SDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           + +T      S+ FV N LI+MY KCG +ED  +VF +M  R+ VSWN++I  +A++G G
Sbjct: 380 THYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG 439

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +AL+++ +M + G +P  VT + +L ACSH GLV +G  +  SM E H + P  +HY C
Sbjct: 440 AEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTC 498

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +VD++GRAG L EA++ IE MPV PD +VW +LL AC +HG+ EMGK+AAEKL    P +
Sbjct: 499 MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWN 558

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
             PY+L++N+Y+  GRW +  +  K M++ GV K+ G SWIE+E +VH F+V DK HP  
Sbjct: 559 SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHR 618

Query: 621 DTIHGVLAELLRLMIDEGYVPN 642
             I+ VL  L   M   GY+P+
Sbjct: 619 KQIYSVLKMLTEQMKRVGYIPD 640



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 150/301 (49%), Gaps = 31/301 (10%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PNS  +   + +C   ++    R +H  +       ++ I++ L+D+Y KC  ++DA ++
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 315 FE---------------------FAEEL----------DGVSMTVILVGFAQNGFEEEAM 343
           F+                     F +E           D  S   ++ GFAQ+   EE++
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           + FVKM +    ++     + L        L +G Q+H+L+ KS ++++ ++ + LI+MY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SKCG +  + +VFS M  RN V+WNS+I  + ++G   +ALE++  M   G+EP +VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S++ AC+ +  + +G++    + + ++          +VDM  +   + EAR   +RM +
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 524 K 524
           +
Sbjct: 313 R 313



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 104/231 (45%), Gaps = 40/231 (17%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW---------- 427
           + +H+ I+ + F+   F+ N LI++Y KC  L+D+ K+F RM  RN+ +W          
Sbjct: 35  RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKS 94

Query: 428 ---------------------NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
                                NSM++ FA+H    ++LE + +M  E     + +F S L
Sbjct: 95  GFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSAL 154

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+ +  +N G + + ++    R S      + ++DM  + G +  A      M ++ +
Sbjct: 155 SACAGLMDLNMGTQ-VHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGM-IERN 212

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           ++ W +L+     +G +      A ++F+   DS   P    L + + +C+
Sbjct: 213 LVTWNSLITCYEQNGPAS----EALEVFVRMMDSGLEPDEVTLASVVSACA 259


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/595 (33%), Positives = 338/595 (56%), Gaps = 37/595 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            +  +L++ Y KC ++  A ++F  M  R+ VSW  ++    ++ + +  F  +++ L+ 
Sbjct: 215 AVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQA 274

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    +  +F  +L++C+  E     + IH  +   G E +V V NALIT Y KC     
Sbjct: 275 GI-SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD 333

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-----QLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            R+ F  M  R+VI+W+A+I+G  Q+     +  +E  +L  +M    + PN +T++S +
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-------- 316
            ACS   AL +GRQIH  + K+  +SD  +++A+ +MY+KCGS+ +A Q+F         
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453

Query: 317 ---------------------FAE--ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
                                F+E    + VS  +++ G+AQ+G   +  +L   M   G
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG 513

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
            + D   + ++L   G  ++L  GK +H+  +K    S+  V   LI MYSKCG++ ++ 
Sbjct: 514 FQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEAR 573

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            VF +++ R++V+WN+M+A + +HG G +A++L++ M  E V P ++TF +++ AC   G
Sbjct: 574 TVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAG 633

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV +G E  + M E  R+ P  +HY C+VD++GRAG L EA  FI+RMP +PD+ VW AL
Sbjct: 634 LVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHAL 693

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC  H + ++ ++AA  +   +P + + Y+ ++NIY+ +GRW +  K  K M + G+ 
Sbjct: 694 LGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLK 753

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K+ G S IEI+ ++H+FV +D  HP+ D+IH  L  L + M + GY P+ RF+LH
Sbjct: 754 KDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLH 808



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 163/528 (30%), Positives = 274/528 (51%), Gaps = 57/528 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++FY K   + +  ++F  M +RD V+W++M++ +  N      F  F+R  +    
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANI- 175

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++ +F  IL AC+   +   ++ IH +V   G E +V V  ALIT Y KCG  S   +
Sbjct: 176 EPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACE 235

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +M+ RNV++WTA+I    Q++   E  +L+ KM    I+PN++T++S + +C+  +A
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH  + +  L++D+ + +AL+ MY KC  ++DA + F+   + D +S + ++ G
Sbjct: 296 LNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355

Query: 333 FAQNGFE-----EEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLII 385
           +AQ+G++     +E  QL  +M + G  + PN V+  ++L    V  +L  G+QIH+ I 
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREG--VFPNKVTFMSILKACSVHGALEQGRQIHAEIS 413

Query: 386 KSDFTSNPFVNNGLINMYS-------------------------------KCGDLEDSIK 414
           K  F S+  +   + NMY+                               KCGDL  + K
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VFS M+ RN VSWN MIA +A+ G+  K  EL   MK+EG +P  VT +S+L AC  +  
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 475 VNKG----MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           + +G     E +K   E   +   +     ++ M  + G + EAR+  +++  + D + W
Sbjct: 534 LERGKLVHAEAVKLGLESDTVVATS-----LIGMYSKCGEVTEARTVFDKISNR-DTVAW 587

Query: 531 QALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCSGR 576
            A+L     HG   +G  A +  K  L +   P      A I +C GR
Sbjct: 588 NAMLAGYGQHG---IGPEAVDLFKRMLKERVPPNEITFTAVISAC-GR 631



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 222/408 (54%), Gaps = 15/408 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           ++  ++  I+  C +       KM+H  +   G   ++ +GN+LI  Y K G  +S  +V
Sbjct: 76  VNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQV 135

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M +R+V+TW+++I+    N    +    F +M    I PN +T+LS + AC+    L
Sbjct: 136 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSML 195

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            + R+IH ++    +++D+ + +AL+ MYSKCG +  A +IF+  +E + VS T I+   
Sbjct: 196 EKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQAN 255

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           AQ+    EA +L+ KM++AG  I PN V+  ++L       +L  G++IHS I +    +
Sbjct: 256 AQHRKLNEAFELYEKMLQAG--ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLET 313

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK-----ALEL 446
           +  V N LI MY KC  ++D+ + F RM+ R+ +SW++MIA +A+ G   K       +L
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQL 373

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            E M+ EGV P  VTF+S+L ACS  G + +G +    +++V   S R+   A + +M  
Sbjct: 374 LERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTA-IFNMYA 432

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           + G + EA     +M  K +V+ W +LL      GD      +AEK+F
Sbjct: 433 KCGSIYEAEQVFSKMENK-NVVAWASLLTMYIKCGDLT----SAEKVF 475



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 175/348 (50%), Gaps = 11/348 (3%)

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           A+ +  +  G +S+G ++ G   V     W    +G ++  +   G+   +K    L+N 
Sbjct: 22  AMTSIVYNNGFASTGEELAGPRSVSGGEVWRLCKAGRLKEAIQLLGI---IKQRGLLVNS 78

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           N  TY   +  C+ L+   +G+ +H  L +L L  D+ + ++L++ YSK G V    Q+F
Sbjct: 79  N--TYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVF 136

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTS 373
                 D V+ + ++  +A N    +A   F +M  A IE  PN ++  ++L      + 
Sbjct: 137 RRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE--PNRITFLSILKACNNYSM 194

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L   ++IH+++  S   ++  V   LI MYSKCG++  + ++F +M  RN VSW ++I A
Sbjct: 195 LEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQA 254

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
            A+H    +A ELYE+M   G+ P  VTF+SLL++C+    +N+G      ++E   +  
Sbjct: 255 NAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE-RGLET 313

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                  ++ M  +   + +AR   +RM  K DV+ W A++   +  G
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMS-KRDVISWSAMIAGYAQSG 360



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+  SL+  Y KC ++  A  +FD +  RDTV+WN M++G+ ++G        FKR L+
Sbjct: 553 TVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLK 612

Query: 149 LGFYQLDQASFTIILSACDRSEL 171
                 ++ +FT ++SAC R+ L
Sbjct: 613 ERV-PPNEITFTAVISACGRAGL 634


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 346/588 (58%), Gaps = 13/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HA+ +K+ +  D   VY       + N+L++ +++  +M  A ++FD++  +D +
Sbjct: 130 LGMEIHAAILKSNQVLD---VY-------VANALVAMHVRFGKMSYAARIFDELDEKDNI 179

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+M++GF +NG ++    FF   L+    + D+ S   IL+A  R    L  K IH  
Sbjct: 180 TWNSMIAGFTQNGLYNEALQFFC-GLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY 238

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                 +  + +GN LI  Y KC   +    VF +M  +++I+WT VI+   QN  + E 
Sbjct: 239 AMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEA 298

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           LKL  K+    ++ +++   S+++ACSGL+ L   +++HG   K  L SDL +++ ++D+
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDV 357

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+ CG++  A ++FE  +  D VS T ++  +  NG   EA+ +F  M +  +E D   +
Sbjct: 358 YADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITL 417

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            ++L      ++L  GK+IH  I +  F       N L++MY+ CG LE++ KVF     
Sbjct: 418 VSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRS 477

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ V W +MI A+  HG G  A+EL+  M+ + + P  +TFL+LL+ACSH GL+N+G   
Sbjct: 478 KSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRL 537

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           L++M   +++ P  EHYAC+VD++GRA  L EA  F++ M ++P   VW A LGAC IH 
Sbjct: 538 LETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHS 597

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + ++G+ AA+KL    PDSP  Y+L++N+++ SGRWK+  +   RMK  G+ K  G SWI
Sbjct: 598 NKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWI 657

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELL-RLMIDEGYVPNKRFILH 648
           E+  +VH+F+V DK HP++  I+  LA++  +L  + GYVP  + +LH
Sbjct: 658 EVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLH 705



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 156/542 (28%), Positives = 264/542 (48%), Gaps = 40/542 (7%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR-D 119
           H G  +H   IK              +   + NSL+S Y KC+ +  A KLFD M  R D
Sbjct: 27  HRGAEIHGLIIKC----------GYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERND 76

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII--LSACDRSELSLVSKM 177
            VSWN+++S +  NG+     G F+   + G   +   ++T++  L AC+ S    +   
Sbjct: 77  VVSWNSIISAYSLNGQCMEALGLFREMQKAG---VGANTYTLVAALQACEDSSFKKLGME 133

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +       +V V NAL+  + + G  S   ++F E+  ++ ITW ++I+G  QN L
Sbjct: 134 IHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGL 193

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           Y E L+ F  +    + P+ ++ +S + A   L  L  G++IH    K  L S+L I + 
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNT 253

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMYSKC  V  A  +F+     D +S T ++  +AQN    EA++L  K+   G+++D
Sbjct: 254 LIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVD 313

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
             M+ + L        L   K++H   +K    S+  + N +I++Y+ CG++  + ++F 
Sbjct: 314 TMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYADCGNINYATRMFE 372

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  ++ VSW SMI+ +  +G   +AL ++  MK   VEP  +T +S+L A + +  +NK
Sbjct: 373 SIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNK 432

Query: 478 GME-----FLKS-MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
           G E     F K  M E   ++   + YAC   +     + I  RS          +++W 
Sbjct: 433 GKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRS--------KSLVLWT 484

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSC--SGRWKERAKAIKR 586
            ++ A  +HG  +    AA +LF    D    P     +A +Y+C  SG   E  + ++ 
Sbjct: 485 TMINAYGMHGRGK----AAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLET 540

Query: 587 MK 588
           MK
Sbjct: 541 MK 542



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 206/416 (49%), Gaps = 18/416 (4%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D  +F  +L AC   E       IH L+  CGY+  V V N+L++ Y KC      RK+
Sbjct: 8   FDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKL 67

Query: 214 FGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           F  M  RN V++W ++IS    N    E L LF +M    +  N+ T ++++ AC     
Sbjct: 68  FDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSF 127

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G +IH  + K     D+ + +AL+ M+ + G +  A +IF+  +E D ++   ++ G
Sbjct: 128 KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG 187

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F QNG   EA+Q F  +  A ++ D   + ++L   G    L  GK+IH+  +K+   SN
Sbjct: 188 FTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSN 247

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N LI+MYSKC  +  +  VF +M  ++ +SW ++IAA+A++    +AL+L  +++ 
Sbjct: 248 LRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQT 307

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE-----HYACVVDMVGR 507
           +G++   +   S L ACS       G+  L    EVH  + +           ++D+   
Sbjct: 308 KGMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYAD 360

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDS 560
            G +  A    E +  K DV+ W +++ +C +H    +  +G +   K    +PDS
Sbjct: 361 CGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPDS 414



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 3/190 (1%)

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+  D      VL   GV   +  G +IH LIIK  + S  FV N L++MY+KC D+  +
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 413 IKVFSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
            K+F RM  RN  VSWNS+I+A++ +G   +AL L+ EM+  GV     T ++ L AC  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
                 GME   ++ + +++       A +V M  R G +  A    + +  K D + W 
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANA-LVAMHVRFGKMSYAARIFDELDEK-DNITWN 182

Query: 532 ALLGACSIHG 541
           +++   + +G
Sbjct: 183 SMIAGFTQNG 192


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/588 (35%), Positives = 343/588 (58%), Gaps = 12/588 (2%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           H G  LH   +K+   F  +N         + NSL++FYLK  ++ +A K+FD+M  RD 
Sbjct: 212 HGGEQLHGFILKS--GFGERNS--------VGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +SWN++++G++ NG  + G   F + L  G  ++D A+   + + C  S L  + + +H 
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHS 320

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +     +  E    N L+  Y KCG   S + VF EM  R+V+++T++I+G  +  L  E
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            +KLF +M    I+P+  T  + +  C+  + L EG+++H  + +  L  D+ + +ALMD
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPN 359
           MY+KCGS+++A  +F      D +S   I+ G+++N +  EA+ LF + + +     D  
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            V+ VL      ++   G++IH  I+++ + S+  V N L++MY+KCG L  +  +F  +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
           A ++ VSW  MIA +  HG G +A+ L+ +M+  G+E  +++F+SLL+ACSH GLV++G 
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            F   M    +I P  EHYAC+VDM+ R G LI+A  FIE MP+ PD  +W ALL  C I
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           H D ++ +  AEK+F  +P++   Y+LMANIY+ + +W++  +  KR+ + G+ K  G S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           WIEI+ +V+ FV  D  +P+ + I   L ++   MI+EGY P  ++ L
Sbjct: 741 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYAL 788



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 235/448 (52%), Gaps = 12/448 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y  C  ++ A ++FD++ +   + WN +++   ++G+F    G FK+ +  G  ++D  +
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYT 197

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F+ +  +          + +H  +   G+ E  +VGN+L+  Y K     S RKVF EM 
Sbjct: 198 FSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMT 257

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+VI+W ++I+G V N L E+GL +FV+M +  I  +  T +S    C+  + +  GR 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H I  K     +    + L+DMYSKCG ++ A  +F    +   VS T ++ G+A+ G 
Sbjct: 318 VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGL 377

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             EA++LF +M + GI  D   V+AVL        L  GK++H  I ++D   + FV+N 
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY----EEMKLEG 454
           L++MY+KCG ++++  VFS M  ++ +SWN++I  ++++    +AL L+    EE +   
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF-- 495

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIE 513
             P + T   +L AC+ +   +KG E    +      S R  H A  +VDM  + G L+ 
Sbjct: 496 -SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLL 552

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHG 541
           A    + +  K D++ W  ++    +HG
Sbjct: 553 AHMLFDDIASK-DLVSWTVMIAGYGMHG 579



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 213/432 (49%), Gaps = 9/432 (2%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +++  FD    R     NT +  F  +G  +        S   G + +D  +   +L  C
Sbjct: 52  DSITTFD----RSVTDANTQLRRFCESGNLENAVKLLCVS---GKWDIDPRTLCSVLQLC 104

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             S+     K +   +   G+  +  +G+ L   Y  CG      +VF E+++   + W 
Sbjct: 105 ADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWN 164

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +++ L ++  +   + LF KM    +  +S T+     + S L+++  G Q+HG + K 
Sbjct: 165 ILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKS 224

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
                  + ++L+  Y K   V+ A ++F+   E D +S   I+ G+  NG  E+ + +F
Sbjct: 225 GFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           V+M+ +GIEID   + +V         + LG+ +HS+ +K+ F+      N L++MYSKC
Sbjct: 285 VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKC 344

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           GDL+ +  VF  M+ R+ VS+ SMIA +AR G   +A++L+EEM+ EG+ P   T  ++L
Sbjct: 345 GDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
           + C+   L+++G    + + E + +         ++DM  + G + EA      M VK D
Sbjct: 405 NCCARYRLLDEGKRVHEWIKE-NDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK-D 462

Query: 527 VLVWQALLGACS 538
           ++ W  ++G  S
Sbjct: 463 IISWNTIIGGYS 474


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/557 (38%), Positives = 314/557 (56%), Gaps = 4/557 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++S Y KC ++R A K+F +   RD VSWNTM++GF+  G F+    F K     GF 
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGF- 96

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            +D  SF  IL          V + +H ++   GYE  V  G+AL+  Y KC       +
Sbjct: 97  AVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFE 156

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + +RN +TW A+ISG  Q         L   M L  +  +  T+   +        
Sbjct: 157 VFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDL 216

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA---EELDGVSMTVI 329
                Q+H  + K  L SD  + +A++  YS+CGS+EDA ++F+ A    +LD VS   I
Sbjct: 217 HKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSI 276

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L GF+Q+G  E+A++ F  M    + ID    SAVL       +L LG+Q+H L++KS F
Sbjct: 277 LTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGF 336

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N FV + LI MYSKCG +ED+ K F      +S++WNS+I  +A+HG G  AL+L+  
Sbjct: 337 EPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFL 396

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK   V+   +TF+++L ACSH+GLV +G  FLKSM   + I PR EHYAC++D++GRAG
Sbjct: 397 MKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAG 456

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA++ IE MP +PD +VW+ LLGAC   GD E+    A  L   +P+    Y+L+++
Sbjct: 457 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSS 516

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           ++    RW E+A   + MKE GV K  G SWIE++ +V SF  +D+ HP  + I+  L E
Sbjct: 517 MFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGE 576

Query: 630 LLRLMIDEGYVPNKRFI 646
           L+  +    YV N  F+
Sbjct: 577 LMEEIRRLDYVANSEFL 593



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 198/414 (47%), Gaps = 30/414 (7%)

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            + L Q+SFT +  A           + HCL    G    +   N +I+ Y KCG     
Sbjct: 4   LHSLSQSSFTALYRA----------SVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIA 53

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF--VKMHLGLINPNSLTYLSSVMACS 268
            K+FGE   R+ ++W  +I+G V    +E  L+    +K +   ++  S   +   +AC 
Sbjct: 54  SKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACV 113

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   +  G+Q+H ++ K+  + ++   SAL+DMY+KC  VEDA+++F+     + V+   
Sbjct: 114 GYVEV--GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNA 171

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+AQ G    A  L   M   G+EID    + +L +        L  Q+H+ I+K  
Sbjct: 172 LISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHG 231

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFS---RMAPRNSVSWNSMIAAFARHGNGFKALE 445
             S+  V N +I  YS+CG +ED+ +VF         + VSWNS++  F++ G    AL+
Sbjct: 232 LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALK 291

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACV 501
            +E M+ + V      F ++L +CS +  +  G +     LKS  E     P     + +
Sbjct: 292 FFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFE-----PNGFVASSL 346

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           + M  + G++ +AR   +  P K   + W +L+   + HG    GK A +  FL
Sbjct: 347 IFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHG---RGKIALDLFFL 396



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 47/235 (20%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WNS+L+ + +     +A+K F++M  +  V                            
Sbjct: 271 VSWNSILTGFSQSGLSEDALKFFENMRSQYVV---------------------------- 302

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
               +D  +F+ +L +C       + + +H LV   G+E    V ++LI  Y KCG    
Sbjct: 303 ----IDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIED 358

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RK F      + I W ++I G  Q+   +  L LF  M    +  + +T+++ + ACS 
Sbjct: 359 ARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSH 418

Query: 270 LQALCEGRQIHGILWKL--ALQSDLCIE------SALMDMYSKCGSVEDAWQIFE 316
           +  + EG       W    +++SD  I       + ++D+  + G +++A  + E
Sbjct: 419 IGLVEEG-------WSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIE 466


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 333/592 (56%), Gaps = 19/592 (3%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F LG  LH   +K+   +D          ++I  + L  Y KC++M +A K+F+ +P   
Sbjct: 255 FKLGTQLHGHALKSDFAYD----------SIIGTATLDMYAKCERMFDAWKVFNTLPNPP 304

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S+N ++ G+ R  +       F+ SL+      D+ S +  L+AC   +  L    +H
Sbjct: 305 RQSYNAIIVGYARQDQGLKALDIFQ-SLQRNNLGFDEISLSGALTACSVIKRHLEGIQLH 363

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L   CG    + V N ++  Y KCG+      +F EM  R+ ++W A+I+   QN+   
Sbjct: 364 GLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIV 423

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L LFV M    + P+  TY S V AC+G QAL  G +IHG + K  +  D  + SAL+
Sbjct: 424 KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALV 483

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG + +A +I    EE   VS   I+ GF+     E A + F +M++ GI  D  
Sbjct: 484 DMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNY 543

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL V     ++ LGKQIH+ I+K    S+ ++ + L++MYSKCG+++DS  +F + 
Sbjct: 544 TYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKA 603

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+W++MI A+A HG G KA+ L+EEM+L  V+P    F+S+L AC+H+G V+KG+
Sbjct: 604 PKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGL 663

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            + + M   + + P+ EHY+C+VD++GR+G + EA   IE MP + D ++W+ LL  C +
Sbjct: 664 HYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKM 723

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            G+ E+ + A   L    P   + Y+L+AN+Y+  G W E AK    MK   + KE G S
Sbjct: 724 QGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCS 783

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE----GYVPNKRFIL 647
           WIE+  +VH+F+V DK HP+++ I+    E   L++DE    GYVP+  F+L
Sbjct: 784 WIEVRDEVHTFLVGDKAHPRSEEIY----EQTHLLVDEMKWAGYVPDIDFML 831



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 163/479 (34%), Positives = 237/479 (49%), Gaps = 21/479 (4%)

Query: 73  TFEPFDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
            F+ FD      +P   VI WN+L+  Y     M  A  LFD MP RD VSWN+++S +L
Sbjct: 60  AFKVFDR-----MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYL 114

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
            NG        F R   L     D A+F +IL AC   E   +   +HCL    G+E +V
Sbjct: 115 HNGVNRKSIEIFVRMRSLKIPH-DYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDV 173

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
             G+AL+  Y KC       +VF EM  RN++ W+AVI+G VQN  + EGLKLF  M   
Sbjct: 174 VTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKV 233

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +  +  TY S   +C+GL A   G Q+HG   K     D  I +A +DMY+KC  + DA
Sbjct: 234 GMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDA 293

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           W++F         S   I+VG+A+     +A+ +F  + +  +  D   +S  L    V 
Sbjct: 294 WKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVI 353

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
                G Q+H L +K     N  V N +++MY KCG L ++  +F  M  R++VSWN++I
Sbjct: 354 KRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAII 413

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-R 490
           AA  ++    K L L+  M    +EP D T+ S++ AC+       G + L   TE+H R
Sbjct: 414 AAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA-------GQQALNYGTEIHGR 466

Query: 491 ISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           I            + +VDM G+ G+L+EA     R+  K  V  W +++   S    SE
Sbjct: 467 IIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTV-SWNSIISGFSSQKQSE 524



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 234/460 (50%), Gaps = 7/460 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  V  ++L+  Y KC ++ +A ++F +MP R+ V W+ +++G+++N  F  G   FK  
Sbjct: 171 NDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDM 230

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           L++G   + Q+++  +  +C       +   +H       +  +  +G A +  Y KC  
Sbjct: 231 LKVGM-GVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCER 289

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                KVF  +      ++ A+I G  +     + L +F  +    +  + ++   ++ A
Sbjct: 290 MFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTA 349

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS ++   EG Q+HG+  K  L  ++C+ + ++DMY KCG++ +A  IFE  E  D VS 
Sbjct: 350 CSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSW 409

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+    QN    + + LFV M+++ +E D     +V+       +L  G +IH  IIK
Sbjct: 410 NAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIK 469

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S    + FV + L++MY KCG L ++ K+ +R+  + +VSWNS+I+ F+       A   
Sbjct: 470 SGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRY 529

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDM 504
           + +M   G+ P + T+ ++L  C+++  +  G +      ++ ++   ++ Y  + +VDM
Sbjct: 530 FSQMLEMGIIPDNYTYATVLDVCANMATIELGKQI---HAQILKLQLHSDVYIASTLVDM 586

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             + G + ++R   E+ P K D + W A++ A + HG  E
Sbjct: 587 YSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHGLGE 625



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 201/416 (48%), Gaps = 45/416 (10%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F+ IL  C   +     K +H  + + G+   + V N L+  Y K    +   KVF  M
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 218 RVRNVITWTAVISG-------------------------------LVQNQLYEEGLKLFV 246
             R+VI+W  +I G                                + N +  + +++FV
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M    I  +  T+   + ACSG++    G Q+H +  ++  ++D+   SAL+DMYSKC 
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            ++DA+++F    E + V  + ++ G+ QN    E ++LF  M+K G+ +  +  ++V  
Sbjct: 188 KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                ++  LG Q+H   +KSDF  +  +    ++MY+KC  + D+ KVF+ +      S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQS 307

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           +N++I  +AR   G KAL++++ ++   +   +++    L ACS   ++ + +E +    
Sbjct: 308 YNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS---VIKRHLEGI---- 360

Query: 487 EVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           ++H ++ +       CV    +DM G+ G L+EA    E M  + D + W A++ A
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAA 415



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 138/311 (44%), Gaps = 45/311 (14%)

Query: 253 INPNS-LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           +NP   LT+   +  CS L+AL  G+Q+H  +        + + + L+  Y K   +  A
Sbjct: 1   MNPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYA 60

Query: 312 WQIFEFAEELDGVSMTVILVGFA-------------------------------QNGFEE 340
           +++F+   + D +S   ++ G+A                                NG   
Sbjct: 61  FKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNR 120

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +++++FV+M    I  D    + +L         GLG Q+H L I+  F ++    + L+
Sbjct: 121 KSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALV 180

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYSKC  L+D+ +VF  M  RN V W+++IA + ++    + L+L+++M   G+  +  
Sbjct: 181 DMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEA 514
           T+ S+  +C+       G+   K  T++H  + +++           +DM  +   + +A
Sbjct: 241 TYASVFRSCA-------GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDA 293

Query: 515 RSFIERMPVKP 525
                 +P  P
Sbjct: 294 WKVFNTLPNPP 304


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/588 (35%), Positives = 343/588 (58%), Gaps = 12/588 (2%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           H G  LH   +K+   F  +N         + NSL++FYLK  ++ +A K+FD+M  RD 
Sbjct: 61  HGGEQLHGFILKS--GFGERNS--------VGNSLVAFYLKNQRVDSARKVFDEMTERDV 110

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +SWN++++G++ NG  + G   F + L  G  ++D A+   + + C  S L  + + +H 
Sbjct: 111 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHS 169

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +     +  E    N L+  Y KCG   S + VF EM  R+V+++T++I+G  +  L  E
Sbjct: 170 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 229

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            +KLF +M    I+P+  T  + +  C+  + L EG+++H  + +  L  D+ + +ALMD
Sbjct: 230 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 289

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPN 359
           MY+KCGS+++A  +F      D +S   I+ G+++N +  EA+ LF + + +     D  
Sbjct: 290 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 349

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            V+ VL      ++   G++IH  I+++ + S+  V N L++MY+KCG L  +  +F  +
Sbjct: 350 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 409

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
           A ++ VSW  MIA +  HG G +A+ L+ +M+  G+E  +++F+SLL+ACSH GLV++G 
Sbjct: 410 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 469

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            F   M    +I P  EHYAC+VDM+ R G LI+A  FIE MP+ PD  +W ALL  C I
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           H D ++ +  AEK+F  +P++   Y+LMANIY+ + +W++  +  KR+ + G+ K  G S
Sbjct: 530 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           WIEI+ +V+ FV  D  +P+ + I   L ++   MI+EGY P  ++ L
Sbjct: 590 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYAL 637



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 228/435 (52%), Gaps = 12/435 (2%)

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD++ +   + WN +++   ++G+F    G FK+ +  G  ++D  +F+ +  +      
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYTFSCVSKSFSSLRS 59

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
               + +H  +   G+ E  +VGN+L+  Y K     S RKVF EM  R+VI+W ++I+G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
            V N L E+GL +FV+M +  I  +  T +S    C+  + +  GR +H I  K     +
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
               + L+DMYSKCG ++ A  +F    +   VS T ++ G+A+ G   EA++LF +M +
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            GI  D   V+AVL        L  GK++H  I ++D   + FV+N L++MY+KCG +++
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY----EEMKLEGVEPTDVTFLSLLH 467
           +  VFS M  ++ +SWN++I  ++++    +AL L+    EE +     P + T   +L 
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF---SPDERTVACVLP 356

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIERMPVKPD 526
           AC+ +   +KG E    +      S R  H A  +VDM  + G L+ A    + +  K D
Sbjct: 357 ACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLAHMLFDDIASK-D 413

Query: 527 VLVWQALLGACSIHG 541
           ++ W  ++    +HG
Sbjct: 414 LVSWTVMIAGYGMHG 428


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/633 (35%), Positives = 339/633 (53%), Gaps = 53/633 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           +RL+ +  K G+            K F+    +NV++       +NS++S  ++   +  
Sbjct: 63  NRLIDVYGKCGYLDYAR-------KVFDRMSERNVFS-------FNSIISTLMRWGFVDE 108

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           +  LF  MP +D  SWN+M++GF ++  F+    +F R +    + L+  SF   LSAC 
Sbjct: 109 SAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR-MHRDDFVLNDYSFGSGLSACS 167

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           R +   +   IH L+    Y  +V +G+ LI  Y KCG     R+VF  M  +NV++W  
Sbjct: 168 RLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNC 227

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL- 286
           +I+   QN    E L+ F +M      P+ +T  S V AC+ L A  EG QIH  + K  
Sbjct: 228 LITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSD 287

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFE-----------------------------F 317
             ++DL + +AL+DMY+KCG V +A  +F+                             F
Sbjct: 288 KFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMF 347

Query: 318 A--EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           A  ++ D VS   ++ G+ QNG  EEA+ LF  + +  +         +L        L 
Sbjct: 348 ATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLE 407

Query: 376 LGKQIHSLIIKSDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           LG+Q HS ++K  F        + FV N LI+MY KCG +E+ ++VF  M  ++ VSWN+
Sbjct: 408 LGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNT 467

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI  +A++G G +ALEL+++M   G +P  VT +  L ACSH GLV +G  +  SMT+ H
Sbjct: 468 MIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEH 527

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            + P  +HY C+VD++GRAG L EA+  IE MP +PD +VW +LL AC +H +  +GKY 
Sbjct: 528 GLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYV 587

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEK+F   P S  PY+L+AN+YS  GRW +     K M+  GV K+ G SWI+I+  VH 
Sbjct: 588 AEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHV 647

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           F+V DK HPQ   I+ +L  L + M   GYVP+
Sbjct: 648 FMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPD 680



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 223/499 (44%), Gaps = 92/499 (18%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D + F  +L  C +   S  ++ +H  +    + EEV + N LI  Y KCG     RKVF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 215 GEMRVRNVI-------------------------------TWTAVISGLVQNQLYEEGLK 243
             M  RNV                                +W ++I+G  Q+  +EE L 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
            FV+MH      N  ++ S + ACS L+ L  G QIHG++ K     D+ + S L+D YS
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG V  A ++F+  EE + VS   ++  + QNG   EA++ F +M + G + D   +++
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           V+       +   G QIH+ ++KSD F ++  + N L++MY+KCG + ++  VF RM  R
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 423 NS-------------------------------VSWNSMIAAFARHGNGFKALELYEEMK 451
           N+                               VSWN++IA + ++G   +AL L+  +K
Sbjct: 323 NAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLK 382

Query: 452 LEGVEPTDVTFLSLLHAC-----------SHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            E V PT  TF +LL+A            +H  +V  G  F +S  E     P       
Sbjct: 383 RESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRF-QSGEE-----PDIFVGNS 436

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP-- 558
           ++DM  + G + E     E M V+ D + W  ++   + +G      Y  E L L Q   
Sbjct: 437 LIDMYMKCGSVEEGLRVFENM-VEKDHVSWNTMIIGYAQNG------YGMEALELFQKML 489

Query: 559 ---DSPAPYILMANIYSCS 574
              + P    ++  + +CS
Sbjct: 490 ESGEKPDHVTMIGTLCACS 508



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 115/420 (27%), Positives = 175/420 (41%), Gaps = 85/420 (20%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ ++S  A    F  G  +HA  +K+ + F N          ++ N+L+  Y KC +
Sbjct: 258 VTLASVVSACATLAAFKEGVQIHARVVKS-DKFRND--------LILGNALVDMYAKCGR 308

Query: 105 MRNAVKLFDDMPMR-------------------------------DTVSWNTMVSGFLRN 133
           +  A  +FD MP+R                               D VSWN +++G+ +N
Sbjct: 309 VNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQN 368

Query: 134 GEFDMGFGFFKR-------SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
           GE +   G F+             F  L  AS  +      R   S V K  H   +  G
Sbjct: 369 GENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVK--HGFRFQSG 426

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
            E ++ VGN+LI  Y KCGS   G +VF  M  ++ ++W  +I G  QN    E L+LF 
Sbjct: 427 EEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQ 486

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           KM      P+ +T + ++ ACS    + EGR+    + K         E  L+ +     
Sbjct: 487 KMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTK---------EHGLLPVK---- 533

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
                          D  +  V L+G A  G  EEA  L   M K   + D  + S++L 
Sbjct: 534 ---------------DHYTCMVDLLGRA--GCLEEAKDLIESMPK---QPDAVVWSSLLS 573

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSN-PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
              V  ++ LGK +   I + D TS+ P+V   L NMYS+ G   D++ V   M  R  V
Sbjct: 574 ACKVHRNITLGKYVAEKIFEIDPTSSGPYVL--LANMYSELGRWGDAVSVRKLMRRRGVV 631



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 11/135 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TFEPFDNQNVYNVPNATVIWNSLL 96
           V   +     LL+ SA      LG   H+  +K    F+  +  +++       + NSL+
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIF-------VGNSLI 438

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y+KC  +   +++F++M  +D VSWNTM+ G+ +NG        F++ LE G  + D 
Sbjct: 439 DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESG-EKPDH 497

Query: 157 ASFTIILSACDRSEL 171
            +    L AC  + L
Sbjct: 498 VTMIGTLCACSHAGL 512


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 340/608 (55%), Gaps = 46/608 (7%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K F+    +N+++       WNS++  + K   + +AV +F+ MP  D  SWN+M+SGF 
Sbjct: 75  KLFDRMLERNIFS-------WNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFE 127

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G FD    +F +    GF  +++ SF   LSAC   +   +   IH LVY   Y  +V
Sbjct: 128 QHGRFDEALVYFAQMHGHGFL-VNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDV 186

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            +G+AL+  Y KCG     + VF EM VR+ ++W ++I+   QN   +E LK+FV+M   
Sbjct: 187 YMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKC 246

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVED 310
            + P+ +T  S V AC+ + A+ EG+QIH  + K    ++DL + +AL+DMY+KC  + +
Sbjct: 247 GVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINE 306

Query: 311 AWQIFEFAEELDGVSMTVILVGFA-------------------------------QNGFE 339
           A  IF+       VS T ++ G+A                               QNG  
Sbjct: 307 ARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGEN 366

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT------SNP 393
           EEA+ LF  + +  +         +L        L LG+Q HS ++K  F       S+ 
Sbjct: 367 EEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDV 426

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV N LI+MY KCG +E+  +VF  M  ++ VSWN+MI  +A++G G KALE++ +M   
Sbjct: 427 FVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLES 486

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  P  VT + +L ACSH GL+++G  + +SMT  H + P  +HY C+VD++GRAG L E
Sbjct: 487 GEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEE 546

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A++ IE M ++PD +VW +LL AC +H + ++G+Y  +KL    P++  PY+L++N+Y+ 
Sbjct: 547 AKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAE 606

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +  WK   +  K M++ GV K+ G SWIEI+ +++ F+V DK H +   I+ VL  +L+ 
Sbjct: 607 NRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQ 666

Query: 634 MIDEGYVP 641
           M   GYVP
Sbjct: 667 MKQAGYVP 674



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 195/390 (50%), Gaps = 63/390 (16%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           LD + F+ +L+ C RS  +  +  +H  +    +  E  + N LI  Y KCG     RK+
Sbjct: 17  LDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKL 76

Query: 214 FGEMRVRNVITWTAV-------------------------------ISGLVQNQLYEEGL 242
           F  M  RN+ +W ++                               ISG  Q+  ++E L
Sbjct: 77  FDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEAL 136

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
             F +MH      N  ++ S++ AC+GLQ L  G QIH ++++    SD+ + SAL+DMY
Sbjct: 137 VYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMY 196

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           SKCG VE A  +F+       VS   ++  + QNG  +EA+++FV+M+K G+E D   ++
Sbjct: 197 SKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLA 256

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDS--------- 412
           +V+      +++  G+QIH+ ++K D F ++  + N L++MY+KC  + ++         
Sbjct: 257 SVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPI 316

Query: 413 ------------------IKV----FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                             +KV    FS M  ++ ++WN++IA   ++G   +AL L+  +
Sbjct: 317 RSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLL 376

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           K E V PT  TF +LL+AC+++  +  G +
Sbjct: 377 KRESVWPTHYTFGNLLNACANLADLQLGRQ 406



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 155/339 (45%), Gaps = 61/339 (17%)

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV------------------ 308
           C+  ++  +  ++H  + K    S+  I++ L+D+Y KCG V                  
Sbjct: 29  CARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSW 88

Query: 309 -------------EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
                        +DA  IFE   ++D  S   ++ GF Q+G  +EA+  F +M   G  
Sbjct: 89  NSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL 148

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           ++     + L        L LG QIHSL+ +S++ S+ ++ + L++MYSKCG +E +  V
Sbjct: 149 VNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSV 208

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  R+ VSWNS+I  + ++G   +AL+++ EM   GVEP +VT  S++ AC+ +  +
Sbjct: 209 FDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAI 268

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK----------- 524
            +G +    + +             ++DM  +   + EAR   + MP++           
Sbjct: 269 KEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSG 328

Query: 525 -------------------PDVLVWQALLGACSIHGDSE 544
                               DV+ W AL+  C+ +G++E
Sbjct: 329 YAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 347/652 (53%), Gaps = 96/652 (14%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG------------- 139
           N+L++FY K   +R A  +FD+MP++ T SWNT++SG+ + G F++              
Sbjct: 49  NNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPV 108

Query: 140 -----------FGFFKRSL----ELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLV 182
                      FG F  ++    ++   ++  + FT+  +LS+C  ++   + + IH  V
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE--- 239
              G    V V  +L+  Y KCG     + VF  M V+N+ TW A+IS  +Q+  +E   
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228

Query: 240 ----------------------------EGLKLFVKM-HLGLINPNSLTYLSSVMACSGL 270
                                       E L +F KM +   + P++ T  S + AC+ L
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANL 288

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-----------FAE 319
           + L  G+QIH  + +   ++   + +AL+ MY+K G VE A  I E           F  
Sbjct: 289 EKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS 348

Query: 320 ELDG----------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
            LDG                      V+ T ++VG+ QNG   +A++LF  MV  G E +
Sbjct: 349 LLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPN 408

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++A+L V    T L  GKQIH+  IK+  +S P V N LI MY+K G++  + +VF 
Sbjct: 409 SYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD 468

Query: 418 -RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
                +  VSW SMI A A+HG G +A+ L+E M   G++P  +T++ +L AC+HVGLV 
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G ++   MTEVH I P   HYAC++D+ GRAGLL EA  FIE MP++PD + W +LL +
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C IH ++++ K AAE+L L  P +   Y+ +AN+YS  G+W+  A+  K MK+ GV KE 
Sbjct: 589 CKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEK 648

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           GISWI I+ +VH+F V+D +HPQ D I+ ++AE+   +   G++P+   +LH
Sbjct: 649 GISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLH 700



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 255/560 (45%), Gaps = 78/560 (13%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           FD   V N+      WN+L+S Y++  Q   A   F+ MP RD VSWN+M+SG+ + G  
Sbjct: 200 FDRMTVKNIST----WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
                 F + L     + D  +   ILSAC   E   + K IH  +     E    VGNA
Sbjct: 256 LEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 197 LIT---------------------------------SYFKCGSSSSGRKVFGEMRVRNVI 223
           LI+                                  Y K G+    R++F ++R R+V+
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            WTA+I G VQN L+ + L+LF  M      PNS T  + +   S L  L  G+QIH   
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTVILVGFAQNGFEEEA 342
            K    S   + +AL+ MY+K G++  A ++F+    + + VS T +++  AQ+G  +EA
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNG- 398
           + LF +M+  G++  P+ ++ V GV    T +GL   G++ ++++ +         +   
Sbjct: 496 INLFERMLSVGMK--PDHITYV-GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 399 LINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           +I++Y + G L+++      M   P N ++W S++A+   H N   A    E + L  ++
Sbjct: 553 MIDLYGRAGLLQEAYLFIESMPIEPDN-IAWGSLLASCKIHKNADLAKVAAERLLL--ID 609

Query: 457 PTDV-TFLSLLHACSHVG-----------LVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           P +   +L+L +  S  G           + ++G+   K ++ +H       H   V D+
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH--IKNEVHAFGVEDV 667

Query: 505 VGRA-----GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--- 556
           +         L+ E    I++M   PD    +++L         ++ KY +EKL +A   
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDT---ESVLHDLEEEVKEQILKYHSEKLAIAFGL 724

Query: 557 --QPDSPAPYILMANIYSCS 574
              P++ A  I M N+  C+
Sbjct: 725 LNTPENTALRI-MKNLRVCN 743



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 145/624 (23%), Positives = 254/624 (40%), Gaps = 145/624 (23%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +E+G        F  IL    R +     + +HC +   G    V + N L+T Y K GS
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ-----------------------------NQ- 236
                 VF EM +++  +W  +ISG  +                             NQ 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 237 -LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            L++  + +F KM    + P+  T  + + +C+  Q L  GR+IH  + KL L S + + 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 296 SALMDMYSKC-------------------------------GSVEDAWQIFEFAEELDGV 324
           ++L++MY+KC                               G  E A   FE   + D V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           S   ++ G++Q G+  EA+ +F KM+ +  ++ D   ++++L        L +GKQIH+ 
Sbjct: 241 SWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLE--------------------------------- 410
           I++++  ++  V N LI+MY+K G +E                                 
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + ++F+++  R+ V+W +MI  + ++G    ALEL+  M  EG EP   T  ++L   S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 471 HVGLVNKGMEFLKSMTEVHRIS---------------------------PRAEH----YA 499
            + ++  G +   S  +    S                           P  +     + 
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 500 CVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
            ++  + + GL  EA +  ERM    +KPD + +  +L AC+  G  E G+     +   
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEV 540

Query: 557 QPDSP--APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
               P  + Y  M ++Y  +G  +E   A   ++ M ++ +  I+W        S +   
Sbjct: 541 HEIEPTLSHYACMIDLYGRAGLLQE---AYLFIESMPIEPDN-IAW-------GSLLASC 589

Query: 615 KMHPQADTIHGVLAELLRLMIDEG 638
           K+H  AD +  V AE L L+ID G
Sbjct: 590 KIHKNAD-LAKVAAERL-LLIDPG 611



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 68/283 (24%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   ++ +LS+S+       G  +HAS IK  E        + P+ T   N+L++ Y K 
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES-------STPSVT---NALIAMYAKT 457

Query: 103 DQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
             +  A ++F D+P   ++ VSW +M+    ++G        F+R L +G  + D  ++ 
Sbjct: 458 GNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM-KPDHITYV 515

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +LSAC    L    +  + ++    +E E T+      S++ C     GR         
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEV-HEIEPTL------SHYACMIDLYGR--------- 559

Query: 221 NVITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
                    +GL+Q   L+ E +          I P+++ + S + +C          +I
Sbjct: 560 ---------AGLLQEAYLFIESMP---------IEPDNIAWGSLLASC----------KI 591

Query: 280 H--GILWKLALQSDLCIES-------ALMDMYSKCGSVEDAWQ 313
           H    L K+A +  L I+        AL ++YS CG  E+A Q
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQ 634


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 328/578 (56%), Gaps = 13/578 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G   HA  IKT       N Y+V     + +SL++ Y K   M +A K+FD +P R+TVS
Sbjct: 132 GLQAHALAIKT------SNFYDV----FVGSSLINMYCKIGCMLDARKVFDTIPERNTVS 181

Query: 123 WNTMVSGF-LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           W T++SG+ +    F+    F     E G +  D+  +T +LSA    +L    K IHCL
Sbjct: 182 WATIISGYAMERMAFEAWELFXLMRREEGAH--DKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G     +VGNAL+T Y KCG      K F     ++ ITW+A+I+G  Q     E 
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF  MHL    P+  T++  + ACS + AL EG+QIHG   K   +  +   +AL+DM
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDM 359

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KCGS+ DA + F++ +E D V  T ++ G+AQNG  E A+ L+ +M    I      +
Sbjct: 360 YAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTM 419

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++VL       +L  GKQIH+  IK  F+    + + L  MY+KCG LED   VF RM  
Sbjct: 420 ASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPS 479

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ ++WN+MI+  +++G G KALEL+EE++    +P  VTF+++L ACSH+GLV +G  +
Sbjct: 480 RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVY 539

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M +   I PR EHYAC+VD++ RAG L E + FIE   +   + +W+ LLGAC  + 
Sbjct: 540 FRMMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYR 599

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G YA EKL        + YIL+++IY+  GR  +  +  + MK  GV+KE G SWI
Sbjct: 600 NYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWI 659

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           E++ QVH FVV D++HPQ   I   L  L   M DE Y
Sbjct: 660 ELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKDECY 697



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 252/544 (46%), Gaps = 23/544 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL    ++     G ++HA  ++T             ++  + NSL++ Y KC  +  A 
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRT----------GSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF--GFFKRSLELGFYQLDQASFTIILSACD 167
            +F+ +  +D VSWN +++G+ + G     F    F+R +       +  +F+ + +A  
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQR-MRAENTLPNGHTFSGVFTAAS 124

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            S  +      H L        +V VG++LI  Y K G     RKVF  +  RN ++W  
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWAT 184

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG    ++  E  +LF  M       +   Y S + A +    +  G+QIH +  K  
Sbjct: 185 IISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L S   + +AL+ MY KCG ++DA + FE + + D ++ + ++ G+AQ G   EA+ LF 
Sbjct: 245 LLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M   G +        V+       +L  GKQIH   +K+ +    +    L++MY+KCG
Sbjct: 305 NMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCG 364

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            L D+ K F  +   + V W SMI+ +A++G    AL LY  M++E + P ++T  S+L 
Sbjct: 365 SLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLR 424

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           ACS +  + +G + + + T  +  S      + +  M  + G L +      RMP + D+
Sbjct: 425 ACSSLAALEQGKQ-IHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR-DI 482

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLF--LAQPDSPAPYILMANIYSCSGRWK--ERAKA 583
           + W A++   S +G+       A +LF  L    +   Y+   N+ S        ER K 
Sbjct: 483 MTWNAMISGLSQNGEG----LKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKV 538

Query: 584 IKRM 587
             RM
Sbjct: 539 YFRM 542



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 203/396 (51%), Gaps = 18/396 (4%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           SF  +L  C R +     K IH  +   G    V + N+L+  Y KCGS    + VF  +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 218 RVRNVITWTAVISGLVQNQL--YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
             ++V++W  +I+G  Q     Y   ++LF +M      PN  T+     A S       
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFG 131

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G Q H +  K +   D+ + S+L++MY K G + DA ++F+   E + VS   I+ G+A 
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
                EA +LF  M +     D  + ++VL    V   +  GKQIH L +K+   S   V
Sbjct: 192 ERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N L+ MY KCG L+D++K F     ++ ++W++MI  +A+ G+  +AL L+  M L G 
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVDMVGRA 508
           +P++ TF+ +++ACS +G + +G        ++H  S +A  Y C       +VDM  + 
Sbjct: 312 KPSEFTFVGVINACSDIGALEEG-------KQIHGYSLKAG-YECQIYFMTALVDMYAKC 363

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G L++AR   + +  +PD+++W +++   + +G++E
Sbjct: 364 GSLVDARKGFDYLK-EPDIVLWTSMISGYAQNGENE 398



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 11/332 (3%)

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M+L L+ P   +++  ++ C+  + L +G+ IH  L +    S + + ++L+++Y+KCGS
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA--MQLFVKMVKAGIEIDPNMVSAVL 365
           +  A  +FE     D VS   ++ G++Q G    +  M+LF +M       + +  S V 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                      G Q H+L IK+    + FV + LINMY K G + D+ KVF  +  RN+V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW ++I+ +A     F+A EL+  M+ E        + S+L A +   LV+ G + +  +
Sbjct: 181 SWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQ-IHCL 239

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              + +   A     +V M G+ G L +A    E    K D+  W A++   +  GDS  
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDI-TWSAMITGYAQAGDS-- 296

Query: 546 GKYAAEKLFLA---QPDSPAPYILMANIYSCS 574
             + A  LF       + P+ +  +  I +CS
Sbjct: 297 --HEALNLFYNMHLNGNKPSEFTFVGVINACS 326


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 340/586 (58%), Gaps = 12/586 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +K+   F  +N         + NSL++FYLK  ++ +A K+FD+M  RD +S
Sbjct: 214 GEQLHGYILKS--GFGERNS--------VGNSLVAFYLKNHRVDSARKVFDEMTERDVIS 263

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN++++G++ NG  + G   F + L  G  ++D A+   + + C  S L  + + +HC  
Sbjct: 264 WNSIINGYVSNGLAEKGLSVFVQMLFSGI-EIDLATIVSVFAGCADSRLISLGRAVHCFG 322

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  E    N L+  Y KCG   S + VF EM  R+V+++T++I+G  +  L  E +
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF +M    I+P+  T  + +  C+  + L EG+++H  + +  +  D+ + +ALMDMY
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMY 442

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPNMV 361
           +KCGS+ +A  +F      D +S   ++ G+++N +  EA+ LF + +V+     D   V
Sbjct: 443 AKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTV 502

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           + VL      ++   G++IH  I+++ + S+  V N L++MY+KCG L  +  +F  +  
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITS 562

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ VSW  MIA +  HG G +A+ L+ +M+  G+EP +++F+SLL+ACSH GLV++G  F
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRF 622

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              M    +I P  EHYAC+VDM+ R G L +A  FIE MP+ PD  +W ALL  C IH 
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHH 682

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D ++ +  AEK+F  +P++   Y+LMANIY+ + +W+E  +  KR+ + G+ K  G SWI
Sbjct: 683 DVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWI 742

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           EI+ +V+ FV  D  +P+ + I   L  +   MI+EGY P  ++ L
Sbjct: 743 EIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYAL 788



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 235/447 (52%), Gaps = 10/447 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y  C  ++ A ++FD + +   + WN +++   ++G+F    G FK+ +  G  ++D  +
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGV-EMDSYT 197

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F+ +  +          + +H  +   G+ E  +VGN+L+  Y K     S RKVF EM 
Sbjct: 198 FSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMT 257

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+VI+W ++I+G V N L E+GL +FV+M    I  +  T +S    C+  + +  GR 
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRA 317

Query: 279 IH--GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +H  G+    + +   C  + L+DMYSKCG ++ A  +F        VS T ++ G+A+ 
Sbjct: 318 VHCFGVKACFSREDRFC--NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYARE 375

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G   EA++LF +M + GI  D   V+AVL     +  L  GK++H  I ++D   + FV+
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS 435

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-V 455
           N L++MY+KCG + ++  VFS M  ++ +SWN++I  ++++    +AL L+  + +E   
Sbjct: 436 NALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRF 495

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEA 514
            P + T   +L AC+ +   +KG E    +      S R  H A  +VDM  + G L+ A
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLA 553

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG 541
           R   + +  K D++ W  ++    +HG
Sbjct: 554 RLLFDDITSK-DLVSWTVMIAGYGMHG 579



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 210/432 (48%), Gaps = 9/432 (2%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +++  FD    R     NT +  F  +G           S   G + +D  +   +L  C
Sbjct: 52  DSITTFD----RSVTDANTQLRRFCESGNLKNAVKLLHVS---GKWDIDPRTLCSVLQLC 104

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             S+     K +   +   G+  +  +G+ L   Y  CG      +VF ++++   + W 
Sbjct: 105 ADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWN 164

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +++ L ++  +   + LF KM    +  +S T+     + S L+++  G Q+HG + K 
Sbjct: 165 ILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKS 224

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
                  + ++L+  Y K   V+ A ++F+   E D +S   I+ G+  NG  E+ + +F
Sbjct: 225 GFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVF 284

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           V+M+ +GIEID   + +V         + LG+ +H   +K+ F+      N L++MYSKC
Sbjct: 285 VQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKC 344

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           GDL+ +  VF  M+ R+ VS+ SMIA +AR G   +A++L+EEM+ EG+ P   T  ++L
Sbjct: 345 GDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVL 404

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
           + C+   L+++G    + + E + +         ++DM  + G + EA      M VK D
Sbjct: 405 NCCARNRLLDEGKRVHEWIKE-NDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVK-D 462

Query: 527 VLVWQALLGACS 538
           ++ W  ++G  S
Sbjct: 463 IISWNTVIGGYS 474


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 334/597 (55%), Gaps = 13/597 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++ L+   + +G    G  LHA   K  F   D            I  +LL+ Y KC  +
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDK-----------IEGALLNLYAKCSDI 423

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
             A+  F +  + + V WN M+  +    +    F  F R +++     +Q ++  IL  
Sbjct: 424 ETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF-RQMQIEEIVPNQYTYPSILKT 482

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C R     + + IH  +    ++    V + LI  Y K G   +   +      ++V++W
Sbjct: 483 CIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSW 542

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           T +I+G  Q    ++ L  F +M    I  + +   ++V AC+GLQAL EG+QIH     
Sbjct: 543 TTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACV 602

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
               SDL  ++AL+ +YSKCG++E+A+  FE  E  D ++   ++ GF Q+G  EEA+++
Sbjct: 603 SGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 662

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M + GI+ +     + +       ++  GKQ+H++I K+ + S   V N +I+MY+K
Sbjct: 663 FARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAK 722

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG + D+ K F  ++ +N VSWN+MI A+++HG G +AL+ +++M    V P  VT + +
Sbjct: 723 CGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 782

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L ACSH+GLV+KG+E+ +SM   + ++P+ EHY CVVDM+ RAGLL  A+ FI  MP++P
Sbjct: 783 LSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEP 842

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           D LVW+ LL AC +H + E+G++AA  L   +P+  A Y+L++N+Y+   +W  R    +
Sbjct: 843 DALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQ 902

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           +MKE GV KE G SWIE++  +HSF V D+ HP AD IH    +L +   + GYV +
Sbjct: 903 KMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQD 959



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 236/482 (48%), Gaps = 18/482 (3%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G    G  LH+  +K    FDN           +   LL FYL    +  A+K+FD+MP 
Sbjct: 82  GSLDEGRKLHSQILKL--GFDNN--------ACLSEKLLDFYLFKGDLDGALKVFDEMPE 131

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL-VSK 176
           R   +WN M+            F  F R +       ++ +F+ +L AC    ++  V +
Sbjct: 132 RTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTP-NEGTFSGVLEACRGGSVAFDVVE 190

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  +   G  +   V N LI  Y + G     R+VF  + +++  +W A+ISGL +N+
Sbjct: 191 QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNE 250

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              E ++LF  M++  I P    + S + AC  +++L  G Q+HG++ KL   SD  + +
Sbjct: 251 CEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 310

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+ +Y   GS+  A  IF    + D V+   ++ G +Q G+ E+AM+LF +M   G+E 
Sbjct: 311 ALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEP 370

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D N +++++     D +L  G+Q+H+   K  F SN  +   L+N+Y+KC D+E ++  F
Sbjct: 371 DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYF 430

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
                 N V WN M+ A+    +   +  ++ +M++E + P   T+ S+L  C  +G + 
Sbjct: 431 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 490

Query: 477 KGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            G +     +++ + S +   Y C  ++DM  + G L  A   + R   K DV+ W  ++
Sbjct: 491 LGEQI---HSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMI 546

Query: 535 GA 536
             
Sbjct: 547 AG 548



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 203/438 (46%), Gaps = 26/438 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ N      +L    + G   LG  +H+  IKT       N Y       + + L+  Y
Sbjct: 469 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQL---NAY-------VCSVLIDMY 518

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K  ++  A  +      +D VSW TM++G+ +    D     F++ L+ G  + D+   
Sbjct: 519 AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI-RSDEVGL 577

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T  +SAC   +     + IH    + G+  ++   NAL+T Y KCG+       F +   
Sbjct: 578 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEA 637

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            + I W A++SG  Q+   EE L++F +M+   I+ N+ T+ S+V A S    + +G+Q+
Sbjct: 638 GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQV 697

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H ++ K    S+  + +A++ MY+KCGS+ DA + F      + VS   ++  ++++GF 
Sbjct: 698 HAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFG 757

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFV 395
            EA+  F +M+ + +   PN V+ V GV    + +GL  +      S+  +      P  
Sbjct: 758 SEALDSFDQMIHSNVR--PNHVTLV-GVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEH 814

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN----GFKALELYEEM 450
              +++M ++ G L  +      M    +++ W ++++A   H N     F A  L E  
Sbjct: 815 YVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLE-- 872

Query: 451 KLEGVEPTDVTFLSLLHA 468
            LE  +      LS L+A
Sbjct: 873 -LEPEDSATYVLLSNLYA 889



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 6/217 (2%)

Query: 324 VSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIH 381
            S T I V  +++  F+E  +     +   GI  +   +  +L G    + SL  G+++H
Sbjct: 35  ASFTAISVSISEDESFQENGID---SVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLH 91

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           S I+K  F +N  ++  L++ Y   GDL+ ++KVF  M  R   +WN MI   A      
Sbjct: 92  SQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSG 151

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           K   L+  M  E V P + TF  +L AC    +    +E + +      +         +
Sbjct: 152 KVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPL 211

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           +D+  R G +  AR   + + +K D   W A++   S
Sbjct: 212 IDLYSRNGFVDRARRVFDGLYLK-DHSSWVAMISGLS 247


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 347/652 (53%), Gaps = 96/652 (14%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG------------- 139
           N+L++FY K   +R A  +FD+MP++ T SWNT++SG+ + G F++              
Sbjct: 49  NNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPV 108

Query: 140 -----------FGFFKRSL----ELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLV 182
                      FG F  ++    ++   ++  + FT+  +LS+C  ++   + + IH  V
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE--- 239
              G    V V  +L+  Y KCG     + VF  M V+N+ TW A+IS  +Q+  +E   
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228

Query: 240 ----------------------------EGLKLFVKM-HLGLINPNSLTYLSSVMACSGL 270
                                       E L +F KM +   + P++ T  S + AC+ L
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANL 288

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-----------FAE 319
           + L  G+QIH  + +   ++   + +AL+ MY+K G VE A  I E           F  
Sbjct: 289 EKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS 348

Query: 320 ELDG----------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
            LDG                      V+ T ++VG+ QNG   +A++LF  MV  G E +
Sbjct: 349 LLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPN 408

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++A+L V    T L  GKQIH+  IK+  +S P V N LI MY+K G++  + +VF 
Sbjct: 409 SYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFD 468

Query: 418 -RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
                +  VSW SMI A A+HG G +A+ L+E M   G++P  +T++ +L AC+HVGLV 
Sbjct: 469 LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVE 528

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G ++   MTEVH I P   HYAC++D+ GRAGLL EA  FIE MP++PD + W +LL +
Sbjct: 529 QGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLAS 588

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C IH ++++ K AAE+L L  P +   Y+ +AN+YS  G+W+  A+  K MK+ GV KE 
Sbjct: 589 CKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEK 648

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           GISWI I+ +VH+F V+D +HPQ D I+ ++AE+   +   G++P+   +LH
Sbjct: 649 GISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLH 700



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 255/560 (45%), Gaps = 78/560 (13%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           FD   V N+      WN+L+S Y++  Q   A   F+ MP RD VSWN+M+SG+ + G  
Sbjct: 200 FDRMTVKNIST----WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYN 255

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
                 F + L     + D  +   ILSAC   E   + K IH  +     E    VGNA
Sbjct: 256 LEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNA 315

Query: 197 LIT---------------------------------SYFKCGSSSSGRKVFGEMRVRNVI 223
           LI+                                  Y K G+    R++F ++R R+V+
Sbjct: 316 LISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVV 375

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            WTA+I G VQN L+ + L+LF  M      PNS T  + +   S L  L  G+QIH   
Sbjct: 376 AWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASA 435

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTVILVGFAQNGFEEEA 342
            K    S   + +AL+ MY+K G++  A ++F+    + + VS T +++  AQ+G  +EA
Sbjct: 436 IKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEA 495

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNG- 398
           + LF +M+  G++  P+ ++ V GV    T +GL   G++ ++++ +         +   
Sbjct: 496 INLFERMLSVGMK--PDHITYV-GVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYAC 552

Query: 399 LINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           +I++Y + G L+++      M   P N ++W S++A+   H N   A    E + L  ++
Sbjct: 553 MIDLYGRAGLLQEAYLFIESMPIEPDN-IAWGSLLASCKIHKNADLAKVAAERLLL--ID 609

Query: 457 PTDV-TFLSLLHACSHVG-----------LVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           P +   +L+L +  S  G           + ++G+   K ++ +H       H   V D+
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIH--IKNEVHAFGVEDV 667

Query: 505 VGRA-----GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--- 556
           +         L+ E    I++M   PD    +++L         ++ KY +EKL +A   
Sbjct: 668 IHPQKDEIYKLMAEIWEEIKKMGFIPDT---ESVLHDLEEEVKEQILKYHSEKLAIAFGL 724

Query: 557 --QPDSPAPYILMANIYSCS 574
              P++ A  I M N+  C+
Sbjct: 725 LNTPENTALRI-MKNLRVCN 743



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 145/624 (23%), Positives = 254/624 (40%), Gaps = 145/624 (23%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +E+G        F  IL    R +     + +HC +   G    V + N L+T Y K GS
Sbjct: 1   MEVGNSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGS 60

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ-----------------------------NQ- 236
                 VF EM +++  +W  +ISG  +                             NQ 
Sbjct: 61  LRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQF 120

Query: 237 -LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            L++  + +F KM    + P+  T  + + +C+  Q L  GR+IH  + KL L S + + 
Sbjct: 121 GLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVA 180

Query: 296 SALMDMYSKC-------------------------------GSVEDAWQIFEFAEELDGV 324
           ++L++MY+KC                               G  E A   FE   + D V
Sbjct: 181 TSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIV 240

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           S   ++ G++Q G+  EA+ +F KM+ +  ++ D   ++++L        L +GKQIH+ 
Sbjct: 241 SWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAY 300

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLE--------------------------------- 410
           I++++  ++  V N LI+MY+K G +E                                 
Sbjct: 301 ILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVK 360

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + ++F+++  R+ V+W +MI  + ++G    ALEL+  M  EG EP   T  ++L   S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 471 HVGLVNKGMEFLKSMTEVHRIS---------------------------PRAEH----YA 499
            + ++  G +   S  +    S                           P  +     + 
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 500 CVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
            ++  + + GL  EA +  ERM    +KPD + +  +L AC+  G  E G+     +   
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEV 540

Query: 557 QPDSP--APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
               P  + Y  M ++Y  +G  +E   A   ++ M ++ +  I+W        S +   
Sbjct: 541 HEIEPTLSHYACMIDLYGRAGLLQE---AYLFIESMPIEPDN-IAW-------GSLLASC 589

Query: 615 KMHPQADTIHGVLAELLRLMIDEG 638
           K+H  AD +  V AE L L+ID G
Sbjct: 590 KIHKNAD-LAKVAAERL-LLIDPG 611



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 68/283 (24%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   ++ +LS+S+       G  +HAS IK  E        + P+ T   N+L++ Y K 
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGES-------STPSVT---NALIAMYAKT 457

Query: 103 DQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
             +  A ++F D+P   ++ VSW +M+    ++G        F+R L +G  + D  ++ 
Sbjct: 458 GNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM-KPDHITYV 515

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +LSAC    L    +  + ++    +E E T+      S++ C     GR         
Sbjct: 516 GVLSACTHVGLVEQGRKYYNMMTEV-HEIEPTL------SHYACMIDLYGR--------- 559

Query: 221 NVITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
                    +GL+Q   L+ E +          I P+++ + S + +C          +I
Sbjct: 560 ---------AGLLQEAYLFIESMP---------IEPDNIAWGSLLASC----------KI 591

Query: 280 H--GILWKLALQSDLCIES-------ALMDMYSKCGSVEDAWQ 313
           H    L K+A +  L I+        AL ++YS CG  E+A Q
Sbjct: 592 HKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQ 634


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 320/564 (56%), Gaps = 1/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N   + N+L+S Y KC  +R+A ++FD M  RD VSW T+   +  +G        + 
Sbjct: 176 LANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYH 235

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             L+ G  +  + ++  +LSAC         K IH  +    +  +V V  AL   Y KC
Sbjct: 236 AMLQEGV-RPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKC 294

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G+    R+VF  +  R+VI W  +I GLV +   EE   +F +M    + P+ +TYL+ +
Sbjct: 295 GAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAIL 354

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+    L  G++IH    K  L SD+   +AL++MYSK GS++DA Q+F+   + D V
Sbjct: 355 SACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 414

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T ++ G+A  G   E+   F KM++ G+E +      VL       +L  GK+IH+ +
Sbjct: 415 SWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV 474

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K+   ++  V N L++MY KCG +ED+I+V   M+ R+ V+WN++I   A++G G +AL
Sbjct: 475 VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEAL 534

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           + +E MK E + P   TF++++ AC    LV +G     SM + + I P  +HYAC+VD+
Sbjct: 535 QKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDI 594

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + RAG L EA   I  MP KP   +W ALL AC  HG+ E+G+ AAE+    +P +   Y
Sbjct: 595 LARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTY 654

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           + ++ IY+ +G W++ AK  K MKE GV KE G SWIE+  +VHSFV  D+ HP+ + I+
Sbjct: 655 VSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIY 714

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L  L + +   GYVP+ RF++H
Sbjct: 715 SELEALTKQIKSLGYVPDTRFVMH 738



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 251/502 (50%), Gaps = 16/502 (3%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIK-TFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +D+Y D  +LL    K     +G  +H   ++   +P    NVY       I N+LL  Y
Sbjct: 42  VDSY-DYVKLLQSCVKAKDLAVGKQVHEHILRFGMKP----NVY-------IINTLLKLY 89

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           + C  +  A +LFD    +  VSWN M+SG+   G     F  F    + G  + D+ +F
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGL-EPDKFTF 148

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             ILSAC         + +H  V   G     TVGNALI+ Y KCGS    R+VF  M  
Sbjct: 149 VSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMAS 208

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+ ++WT +     ++   +E LK +  M    + P+ +TY++ + AC  L AL +G+QI
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + +    SD+ + +AL  MY KCG+V+DA ++FE     D ++   ++ G   +G  
Sbjct: 269 HAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQL 328

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA  +F +M+K  +  D     A+L        L  GK+IH+  +K    S+    N L
Sbjct: 329 EEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNAL 388

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           INMYSK G ++D+ +VF RM  R+ VSW +++  +A  G   ++   +++M  +GVE   
Sbjct: 389 INMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANK 448

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +T++ +L ACS+   +  G E    + +    +  A   A ++ M  + G + +A    E
Sbjct: 449 ITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANA-LMSMYFKCGSVEDAIRVSE 507

Query: 520 RMPVKPDVLVWQALLGACSIHG 541
            M  + DV+ W  L+G  + +G
Sbjct: 508 GMSTR-DVVTWNTLIGGLAQNG 528



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 206/384 (53%), Gaps = 2/384 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q+D   +  +L +C +++   V K +H  +   G +  V + N L+  Y  CGS +  R+
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARR 100

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +   ++V++W  +ISG     L +E   LF  M    + P+  T++S + ACS   A
Sbjct: 101 LFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAA 160

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR++H  + +  L ++  + +AL+ MY+KCGSV DA ++F+     D VS T +   
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A++G+ +E+++ +  M++ G+         VL   G   +L  GKQIH+ I++S+  S+
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSD 280

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+  L  MY KCG ++D+ +VF  +  R+ ++WN+MI      G   +A  ++  M  
Sbjct: 281 VRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK 340

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           E V P  VT+L++L AC+  G +  G E      +   +S        +++M  +AG + 
Sbjct: 341 ECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSD-VRFGNALINMYSKAGSMK 399

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           +AR   +RMP K DV+ W AL+G 
Sbjct: 400 DARQVFDRMP-KRDVVSWTALVGG 422


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/628 (35%), Positives = 338/628 (53%), Gaps = 76/628 (12%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V   T + N+L+S Y +  ++R+A ++FD++P+R+T S+N ++S + R G  D     F+
Sbjct: 48  VAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFE 107

Query: 145 R--------------------------------SLELGFYQLDQASFTIILSACDRSELS 172
                                            ++    + L+  SF   LSAC   + S
Sbjct: 108 AIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDS 167

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
              + +H LV    + ++V + +AL+  Y KC      R+VF  M  RNV++W ++I+  
Sbjct: 168 RTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCY 227

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM-ACSGLQALCEGRQIHGILWKL-ALQS 290
            QN    E L LFV+M     +P+ +T LSSVM AC+GL A  EGRQ+H  + K   L+ 
Sbjct: 228 EQNGPVGEALMLFVEMMAAGFSPDEVT-LSSVMSACAGLAADREGRQVHAHMVKCDRLRD 286

Query: 291 DLCIESALMDMYSKCG-------------------------------SVEDAWQIFEFAE 319
           D+ + +AL+DMY+KCG                               +VEDA  +F    
Sbjct: 287 DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMV 346

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + ++  V++  +AQNG EEEA++LFV++ +  I         VL   G    L LG+Q
Sbjct: 347 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQ 406

Query: 380 IHSLIIKSDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
            H  ++K  F       S+ FV N L++MY K G ++D  KVF RMA R++VSWN+MI  
Sbjct: 407 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVG 466

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A++G    AL L+E M      P  VT + +L AC H GLV++G  +  SMTE H I+P
Sbjct: 467 YAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITP 526

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HY C+VD++GRAG L EA   I  MP++PD ++W +LLGAC +H + E+G++ A +L
Sbjct: 527 SRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRL 586

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F   P +  PY+L++N+Y+  G+W E  +  + MK+ GV K+ G SWIEI ++++ F+  
Sbjct: 587 FELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLAR 646

Query: 614 DKMHPQADTIHGVLA----ELLRLMIDE 637
           DK HP  + IH  L     E+ R  IDE
Sbjct: 647 DKRHPCRNEIHNTLRIIQMEMGRTSIDE 674



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 118/240 (49%), Gaps = 9/240 (3%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           ++P+ +++   S+L+ Y K   + +A  +F  M  ++ ++WN +++ + +NGE +     
Sbjct: 313 SMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRL 372

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY------EEEVTVGNA 196
           F + L+         ++  +L+AC       + +  H  V   G+      E +V VGN+
Sbjct: 373 FVQ-LKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNS 431

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L+  Y K GS   G KVF  M  R+ ++W A+I G  QN   ++ L LF +M     NP+
Sbjct: 432 LVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPD 491

Query: 257 SLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           S+T +  + AC     + EGR+  H +     +       + ++D+  + G +++A ++ 
Sbjct: 492 SVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELI 551



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 41/198 (20%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L   +  H+ I+KS      F+ N L++ Y++ G L D+ +VF  +  RN+ S+N++++
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VGLVNKGMEFLKSM----- 485
           A+AR G   +A  L+E +     +P   ++ +++ A +    G     + FL +M     
Sbjct: 92  AYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDF 147

Query: 486 -----------------------TEVHRISPRAEH------YACVVDMVGRAGLLIEARS 516
                                   +VH +  R+ H       + +VDM  +     +AR 
Sbjct: 148 VLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARR 207

Query: 517 FIERMPVKPDVLVWQALL 534
             + MP + +V+ W +L+
Sbjct: 208 VFDAMPER-NVVSWNSLI 224


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 329/582 (56%), Gaps = 15/582 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  LH   +KT          +  +  ++  + L  Y KCD M +A KLF  +P  +  
Sbjct: 276 LGTQLHCHALKT----------DFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLEL--GFYQLDQASFTIILSACDRSELSLVSKMIH 179
           S+N M+ G+ RN   + GF  FK  L+L    +  D+ S +  LSA    +       +H
Sbjct: 326 SYNAMIIGYARN---EQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLH 382

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L         + V NA++  Y KCG+      +F EM +R+ ++W A+I+   QN+   
Sbjct: 383 GLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEG 442

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L  F  M    + P+  TY S + AC+G +A   G ++HG + K  +   + + SAL+
Sbjct: 443 KTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALV 502

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMYSKCG +E+A +I    EE   VS   I+ GF+     E++ + F  M++ G+E D  
Sbjct: 503 DMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNF 562

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL       ++GLGKQIH+ +IK +  S+ ++ + L++MYSKCG++ DS+ +F + 
Sbjct: 563 TYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKA 622

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+SV+WN+MI  FA HG G +ALEL+E M  E ++P   TF+S+L ACSHVG   KG+
Sbjct: 623 PKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGL 682

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            + + M  ++ + P+ EHY+C+VD++GR+G + EA   I+ MP + D ++W+ LL  C I
Sbjct: 683 FYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKI 742

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            G+ E+ + AA  L    P+  + Y L++NIY+ +G W++ +K  + M+   + KE G S
Sbjct: 743 QGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCS 802

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           WIE++ +VH+F+V DK HP+ + I+ +L  L+  M   G  P
Sbjct: 803 WIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLICDMRRSGCAP 844



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 239/490 (48%), Gaps = 43/490 (8%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV----------------------- 127
           + N L+  Y+KC  +  A K+F++MP RD VSWNTMV                       
Sbjct: 61  VTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHG 120

Query: 128 ---------SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
                    SG+L+NG+       F +  +LG    D  +  + L  C   E  ++   I
Sbjct: 121 DVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGV-MFDHTTLAVSLKICSLLEDQVLGIQI 179

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H +    G++ +V  G+AL+  Y KC S      VF E+  +N I+W+A I+G VQN   
Sbjct: 180 HGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQL 239

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
             GLKLF +M    I  +  TY S   +C+GL A   G Q+H    K    SD+ + +A 
Sbjct: 240 LRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTAT 299

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KC ++ DA+++F    + +  S   +++G+A+N    +A +LF+++ K     D 
Sbjct: 300 LDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDE 359

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             +S  L    V      G Q+H L IKS+ +SN  V N +++MY KCG L ++  +F  
Sbjct: 360 VSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDE 419

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  R+ VSWN++I A  ++ +  K L  +  M    +EP + T+ S+L AC+     + G
Sbjct: 420 MEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG 479

Query: 479 ME----FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ME     +KS   +      A     +VDM  + G++ EA     R+  +  ++ W A++
Sbjct: 480 MEVHGRIIKSGMGLKMFVGSA-----LVDMYSKCGMMEEAEKIHYRLE-EQTMVSWNAII 533

Query: 535 GACSIHGDSE 544
              S+   SE
Sbjct: 534 SGFSLQKKSE 543



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 233/455 (51%), Gaps = 3/455 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V  ++L+  Y KC+ + +++ +F ++P ++ +SW+  ++G ++N +   G   FK     
Sbjct: 193 VTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRK 252

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   + Q+++  +  +C     S +   +HC      +  +V VG A +  Y KC + S 
Sbjct: 253 GI-GVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSD 311

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F  +   N+ ++ A+I G  +N+   +  KLF+++     + + ++   ++ A + 
Sbjct: 312 AYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAV 371

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++   EG Q+HG+  K  L S++C+ +A++DMY KCG++ +A  +F+  E  D VS   I
Sbjct: 372 IKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAI 431

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +    QN  E + +  F  M+++ +E D     +VL       +   G ++H  IIKS  
Sbjct: 432 ITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGM 491

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
               FV + L++MYSKCG +E++ K+  R+  +  VSWN++I+ F+       +   +  
Sbjct: 492 GLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSH 551

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   GVEP + T+ ++L  C+++  V  G +    M ++  +S      + +VDM  + G
Sbjct: 552 MLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSD-VYITSTLVDMYSKCG 610

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + ++     + P K D + W A++   + HG  E
Sbjct: 611 NMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLGE 644



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 44/82 (53%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  GK+ H+ +I S FT   FV N LI MY KC  LE + KVF  M  R+ VSWN+M+ 
Sbjct: 39  ALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVF 98

Query: 433 AFARHGNGFKALELYEEMKLEG 454
             A  G    A  ++  M   G
Sbjct: 99  GCAGAGRMELAQAVFNSMPHHG 120


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 372/718 (51%), Gaps = 93/718 (12%)

Query: 6   VFLKLNSNFPFCSSLVSPFITKIIQDPTSS-------TSKLVLDNYVDISRLLSISAKEG 58
           V L L++    C++L+   + K     T+         S LV   Y+ ++ L+++ +K G
Sbjct: 5   VPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYL-MNNLMNVYSKTG 63

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           +     +LHA   K F+    +  ++       WN++LS Y K   M ++ + FD +P R
Sbjct: 64  Y-----ALHAR--KLFDEMPLRTAFS-------WNTVLSAYAKRGDMDSSCEFFDRLPQR 109

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D+VSW TM+ G+   G++          +  G  +  Q + T +L++   +      K +
Sbjct: 110 DSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGI-EPSQFTLTNVLASVAATRCLETGKKV 168

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV------------------- 219
           H  +   G    V+V N+L+  Y KCG     + VF  M V                   
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQM 228

Query: 220 ------------RNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMA 266
                       R+++TW ++ISG  Q       L +F KM    +++P+  T  S + A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSA 288

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---------- 316
           C+ L+ LC G QIH  +          + +AL+ MYS+CG VE A ++ E          
Sbjct: 289 CANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 317 -FAEELDG----------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
            F   LDG                      V+ T ++VG+ Q+G   EA+ LF  MV  G
Sbjct: 349 GFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMV--G 406

Query: 354 IEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            E  PN   ++A+L V     SLG GKQIH   +KS    +  V+N LI MY+K G +  
Sbjct: 407 EEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITS 466

Query: 412 SIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           + + F  +   R++VSW SMI A A+HG+  +ALEL+E M +EG+ P  +T++ +  AC+
Sbjct: 467 ASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACT 526

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLVN+G ++   M +V +I P   HYAC+VD+ GRAGLL EA+ FIE+MP++PDV+ W
Sbjct: 527 HAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTW 586

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            +LL AC ++ + ++GK AAE+L L +P++   Y  +AN+YS  G+W+E AK  K MK+ 
Sbjct: 587 GSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDG 646

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            V KE G SWIE++ +VH+F V+D +HPQ + I+  + ++   +   GYVP+   +LH
Sbjct: 647 RVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLH 704


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 337/600 (56%), Gaps = 11/600 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+  ++  LS+ A E     G  LH+  +K            +     + N+LLS Y KC
Sbjct: 241 NFATLACFLSVCAAEADLLSGVQLHSLAVKC----------GLEQEVAVANTLLSMYAKC 290

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +A +LF+ +P  D V+WN M+SG ++NG  D   G F   L  G  + D  +   +
Sbjct: 291 RCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG-ARPDSVTLVSL 349

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L A          K +H  +       +  + +AL+  YFKC    + R ++   R  +V
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +  + VISG V N + E+ L++F  +    I PN++T  S + AC+ + AL  G++IHG 
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + + A +    +ESALMDMY+KCG ++ +  IF      D V+   ++  F+QNG  +EA
Sbjct: 470 VLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEA 529

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   GI+ +   +S+ L       ++  GK+IH +IIK    ++ F  + LI+M
Sbjct: 530 LDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDM 589

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG++E +++VF  M  +N VSWNS+I+A+  HG   +++     M+ EG +P  VTF
Sbjct: 590 YAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTF 649

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+L+ AC+H GLV +G++  + MT+ + I+PR EH+AC+VD+  R+G L +A  FI  MP
Sbjct: 650 LALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMP 709

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            KPD  +W ALL AC +H + E+   A+++LF   P +   Y+LM+NI + +GRW   +K
Sbjct: 710 FKPDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSK 769

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             + MK+  + K  G SW+++    H FV  DK HP+++ I+  L  LL+ + +EGYVP 
Sbjct: 770 VRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELREEGYVPR 829



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 281/552 (50%), Gaps = 57/552 (10%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y     +R+A   FD MP RD V WN M+ G+++ G+       F R++ + 
Sbjct: 178 VGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLF-RNMRVS 236

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + + A+    LS C      L    +H L   CG E+EV V N L++ Y KC      
Sbjct: 237 GCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDA 296

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            ++F  +   +++TW  +ISG VQN L +E L LF  M      P+S+T +S + A + L
Sbjct: 297 WRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDL 356

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +G+++HG + +  +  D  + SAL+D+Y KC  V  A  +++ A  +D V  + ++
Sbjct: 357 NGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVI 416

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+  NG  E+A+Q+F  +++  I+ +   V++VL      ++L LG++IH  ++++ + 
Sbjct: 417 SGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYE 476

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
              +V + L++MY+KCG L+ S  +FS+M+ ++ V+WNSMI++F+++G   +AL+L+ +M
Sbjct: 477 GKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQM 536

Query: 451 KLEGVEPTDVTFLSLLHACSHV----------GLVNKG---------------------- 478
            +EG++  +VT  S L AC+ +          G++ KG                      
Sbjct: 537 CMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNM 596

Query: 479 ------MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP---VKPDVLV 529
                  EF+    EV         +  ++   G  GL+ E+ SF+ RM     KPD + 
Sbjct: 597 ELALRVFEFMPDKNEV--------SWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVT 648

Query: 530 WQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + AL+ AC+  G  E G        K +L  P     +  M ++YS SGR     KAI+ 
Sbjct: 649 FLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEH-FACMVDLYSRSGRLD---KAIQF 704

Query: 587 MKEMGVDKETGI 598
           + +M    + GI
Sbjct: 705 IADMPFKPDAGI 716



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/536 (23%), Positives = 246/536 (45%), Gaps = 23/536 (4%)

Query: 21  VSPFITKIIQDPTSSTSKLVLDNYVDIS---RLLSI---SAKEGHFHLGPSLHASFIKTF 74
           ++P I K+ + P  ST+    +   D+S   RLL++        H  LG  +HA  + + 
Sbjct: 3   LAPPILKMPRRPCCSTTFSATEVVTDVSSADRLLALLRGCVSAPHLPLGLQIHARAVVS- 61

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFL 131
                    +  N   +   LL  Y+   + R+AV +F  +P      ++ WN ++ GF 
Sbjct: 62  ------GALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFT 115

Query: 132 RNGEFDMGFGFF-KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
             G   +   F+ K          D  +   ++ +C       + +++H      G   +
Sbjct: 116 AAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASD 175

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V VG+ALI  Y   G     R  F  M  R+ + W  ++ G ++       ++LF  M +
Sbjct: 176 VYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRV 235

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               PN  T    +  C+    L  G Q+H +  K  L+ ++ + + L+ MY+KC  ++D
Sbjct: 236 SGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDD 295

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           AW++FE     D V+   ++ G  QNG  +EA+ LF  M+++G   D   + ++L     
Sbjct: 296 AWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTD 355

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L  GK++H  II++    + F+ + L+++Y KC D+  +  ++      + V  +++
Sbjct: 356 LNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTV 415

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ +  +G   KAL+++  +  + ++P  VT  S+L AC+ +  +  G E       V R
Sbjct: 416 ISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEI---HGYVLR 472

Query: 491 ISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            +   + Y  + ++DM  + G L  +     +M +K D + W +++ + S +G+ +
Sbjct: 473 NAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISSFSQNGEPQ 527


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 339/600 (56%), Gaps = 13/600 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           N+  ++  LS+ A +     G  LH+  +K   EP              + N+LL+ Y K
Sbjct: 241 NFATLACFLSVCATDADLLSGAQLHSLAVKCGLEP-----------EVAVANTLLAMYAK 289

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +A +LF+ MP  D V+WN M+SG ++NG F   FG F   ++    + D  +   
Sbjct: 290 CQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFY-DMQRSGARPDSITLVS 348

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L A          K +H  +       +V + +AL+  YFKC      + ++   R  +
Sbjct: 349 LLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAID 408

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+  + +ISG V N + EE L++F  +    I PN++T  S +  C+ + AL  G+QIHG
Sbjct: 409 VVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHG 468

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + + A +    +ESALMDMY+KCG ++ +  IF    + D V+   ++  F+QNG  +E
Sbjct: 469 YVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQE 528

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +M   GI+ +   +SA L       ++  GK+IH + IK    ++ F  + LI+
Sbjct: 529 ALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALID 588

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG+LE +++VF  M  +N VSWNS+I+A+  HG   +++ L   M+ EG +P  VT
Sbjct: 589 MYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVT 648

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL+L+ AC+H GLV +G++  + MT+ + I+PR EH+AC+VD+  R+G L +A  FI  M
Sbjct: 649 FLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADM 708

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P KPD  +W ALL AC +H + E+   A+++LF   P +   Y+LM+NI + +GRW   +
Sbjct: 709 PFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVS 768

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  + MK+  + K  G SW+++    H FV  DK HP+++ I+  L  LL+ + +EGYVP
Sbjct: 769 KVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELREEGYVP 828



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 124/539 (23%), Positives = 240/539 (44%), Gaps = 34/539 (6%)

Query: 15  PFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSI---SAKEGHFHLGPSLHASFI 71
           PFCS+  S   T  + D +S+             RLL++        H  LG  +HA  +
Sbjct: 14  PFCSTTFSA--TAAVTDVSSA------------DRLLAVLRGCVSAPHLPLGLQIHARAV 59

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS---WNTMVS 128
            +    D+       N   +   LL  Y+   + R+AV +F  +P     S   WN ++ 
Sbjct: 60  VSGALSDH-------NHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIR 112

Query: 129 GFLRNGEFDMGFGFF-KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
           GF   G+  +   F+ K          D  +   ++ +C       + +++H      G 
Sbjct: 113 GFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGL 172

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
             +V VG+AL+  Y   G   + R  F  +  R+ + W  ++ G ++    +  ++LF  
Sbjct: 173 ANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRN 232

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M      PN  T    +  C+    L  G Q+H +  K  L+ ++ + + L+ MY+KC  
Sbjct: 233 MRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQC 292

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           ++DAW++FE   + D V+   ++ G  QNG   EA  LF  M ++G   D   + ++L  
Sbjct: 293 LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                 L  GK++H  I+++    + F+ + L+++Y KC D+  +  ++      + V  
Sbjct: 353 LTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIG 412

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           ++MI+ +  +G   +AL+++  +  + ++P  VT  S+L  C+ +  +  G +       
Sbjct: 413 STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQI---HGY 469

Query: 488 VHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           V R +   + Y  + ++DM  + G L  +     +M  K D + W +++ + S +G  +
Sbjct: 470 VLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQK-DEVTWNSMISSFSQNGKPQ 527


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 324/562 (57%), Gaps = 9/562 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y +C  +  A  +FD M  RD VSW+TM+    RN EFDM     +   E+ 
Sbjct: 131 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIR---EMN 187

Query: 151 FYQL---DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE--VTVGNALITSYFKCG 205
           F Q+   + A  +++    D + + +  K +H  V      E   V    AL+  Y KCG
Sbjct: 188 FMQVRPSEVAMVSMVNLFADTANMRM-GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 246

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                R++F  +  + V++WTA+I+G +++   EEG KLF++M    I PN +T LS ++
Sbjct: 247 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIV 306

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C    AL  G+Q+H  + +      L + +AL+DMY KC  + +A  +F+  +  D + 
Sbjct: 307 ECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMI 366

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T +L  +AQ    ++A  LF +M  +G+      + ++L +  V  +L LGK +HS I 
Sbjct: 367 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYID 426

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K     +  +N  L++MY+KCGD+  + ++F     R+   WN++I  FA HG G +AL+
Sbjct: 427 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 486

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++ EM+ +GV+P D+TF+ LLHACSH GLV +G +  + M     + P+ EHY C+VD++
Sbjct: 487 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 546

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAGLL EA   I+ MP+KP+ +VW AL+ AC +H + ++G+ AA +L   +P++    +
Sbjct: 547 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNV 606

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           LM+NIY+ + RW + A   K MK +G+ KE G S IE+   VH F++ D+ HPQ   I+ 
Sbjct: 607 LMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINE 666

Query: 626 VLAELLRLMIDEGYVPNKRFIL 647
           +LAE+ R + + GYVP+   +L
Sbjct: 667 MLAEMRRKLNEAGYVPDTSTVL 688



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 207/386 (53%), Gaps = 6/386 (1%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L AC +   + + K IH  V   G + +V VGNAL+  Y +C      R VF +M  R+
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++W+ +I  L +N+ ++  L+L  +M+   + P+ +  +S V   +    +  G+ +H 
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 282 ILWKLALQSDLCI--ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
            + + +    + +   +AL+DMY+KCG +  A Q+F    +   VS T ++ G  ++   
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EE  +LF++M +  I  +   + +++   G   +L LGKQ+H+ I+++ F+ +  +   L
Sbjct: 280 EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATAL 339

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY KC D+ ++  +F     R+ + W +M++A+A+     +A  L+++M+  GV PT 
Sbjct: 340 VDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 399

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFI 518
           VT +SLL  C+  G ++ G +++ S  +  R+         +VDM  + G +  A R FI
Sbjct: 400 VTIVSLLSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFI 458

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           E   +  D+ +W A++   ++HG  E
Sbjct: 459 E--AISRDICMWNAIITGFAMHGYGE 482



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + AC  +     G++IHG + K  L  D+ + +ALM MY +C  VE A  +F+   E 
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQ 379
           D VS + ++   ++N   + A++L  +M    +++ P+ V+ V  + +F    ++ +GK 
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREM--NFMQVRPSEVAMVSMVNLFADTANMRMGKA 216

Query: 380 IHSLIIKSDFTSNPFV--NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +H+ +I++    +  V     L++MY+KCG L  + ++F+ +  +  VSW +MIA   R 
Sbjct: 217 MHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRS 276

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               +  +L+  M+ E + P ++T LSL+  C   G +  G + L +    +  S     
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQ-LHAYILRNGFSVSLAL 335

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              +VDM G+   +  AR+  +    + DV++W A+L A
Sbjct: 336 ATALVDMYGKCSDIRNARALFDSTQNR-DVMIWTAMLSA 373



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 17/222 (7%)

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           M  +VL   G  +   LGK+IH  ++K     + FV N L+ MY +C  +E +  VF +M
Sbjct: 96  MAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKM 155

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ VSW++MI + +R+     ALEL  EM    V P++V  +S+++  +        M
Sbjct: 156 MERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTA----NM 211

Query: 480 EFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
              K+M      +   EH        ++DM  + G L  AR     +  K  V+ W A++
Sbjct: 212 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT-VVSWTAMI 270

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSC 573
             C      E G     KLF+   +    P    +++ I  C
Sbjct: 271 AGCIRSNRLEEGT----KLFIRMQEENIFPNEITMLSLIVEC 308



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 21/193 (10%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V I  LLS+ A  G   LG  +H+   K     D           ++  +L+  Y KC  
Sbjct: 400 VTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD----------CILNTALVDMYAKCGD 449

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A +LF +   RD   WN +++GF  +G  +     F   +E    + +  +F  +L 
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA-EMERQGVKPNDITFIGLLH 508

Query: 165 ACDRSEL-----SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           AC  + L      L  KM+H      G   ++     ++    + G      ++   M +
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHTF----GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 564

Query: 220 R-NVITWTAVISG 231
           + N I W A+++ 
Sbjct: 565 KPNTIVWGALVAA 577


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 338/607 (55%), Gaps = 18/607 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +++LL   +K G F  G  +HA+ +     FD           ++ N L+  Y KC ++ 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFD----------LIMNNDLIDMYGKCSRVD 56

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL--DQASFTIILS 164
            A  +FD M  R+ VSW  ++ G+L+ G             E+G+  +  ++ +F+  L 
Sbjct: 57  LACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALL---CEMGYSGVKPNEFTFSTSLK 113

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC    +      IH +    G+E    VGNA I  Y KCG      +VF +M  RN+++
Sbjct: 114 ACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVS 173

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W A+I+G        + L LF +M      P+  T+ S++ AC  L A+  G QIH  L 
Sbjct: 174 WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLI 233

Query: 285 KLALQSDL--CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
                  +   I SA++D+Y+KCG + +A ++F+  E+ + +S + ++ GFAQ G   EA
Sbjct: 234 TRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEA 293

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           M LF ++ ++   +D  ++S ++GVF     +  GKQ+H  I+K     +  V N +I+M
Sbjct: 294 MDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDM 353

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG  E++ ++FS M  RN VSW  MI  + +HG G KA+ L+  M+L+G+E  +V +
Sbjct: 354 YLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAY 413

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+LL ACSH GL+ +  E+   +   H++ P  EHYAC+VD++GRAG L EA++ IE M 
Sbjct: 414 LALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMK 473

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           +KP+  +WQ LL AC +HG+ E+G+   E LF    D+P  Y++M+NIY+ +G WKE  +
Sbjct: 474 LKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECER 533

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVP 641
             K +K  G+ KE G SW+EI K++H F   D  HP  + IH +L E+ R + +E GY  
Sbjct: 534 VRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAY 593

Query: 642 NKRFILH 648
             RF LH
Sbjct: 594 GLRFALH 600


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/608 (34%), Positives = 340/608 (55%), Gaps = 17/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    +  L + A+EG    G  +H   +K            +     + NSL++ YLKC
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKN----------GLDKTIPVSNSLINLYLKC 242

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R A  LFD   ++  V+WN+M+SG+  NG      G F  S+ L + +L ++SF  +
Sbjct: 243 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF-YSMRLNYVRLSESSFASV 301

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRN 221
           +  C   +    ++ +HC V   G+  +  +  AL+ +Y KC +     ++F E+  V N
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WTA+ISG +QN   EE + LF +M    + PN  TY   + A   +       ++H 
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHA 417

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +    + +AL+D Y K G VE+A ++F   ++ D V+ + +L G+AQ G  E 
Sbjct: 418 QVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEA 477

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGV-FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           A+++F ++ K GI+ +    S++L V    + S+G GKQ H   IKS   S+  V++ L+
Sbjct: 478 AIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALL 537

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY+K G++E + +VF R   ++ VSWNSMI+ +A+HG   KAL++++EMK   V+   V
Sbjct: 538 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 597

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +  AC+H GLV +G ++   M    +I+P  EH +C+VD+  RAG L +A   IE 
Sbjct: 598 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIEN 657

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W+ +L AC +H  +E+G+ AAEK+   +P+  A Y+L++N+Y+ SG W+ER
Sbjct: 658 MPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQER 717

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           AK  K M E  V KE G SWIE++ + +SF+  D+ HP  D I+  L +L   + D GY 
Sbjct: 718 AKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 777

Query: 641 PNKRFILH 648
           P+  ++L 
Sbjct: 778 PDTSYVLQ 785



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 141/502 (28%), Positives = 248/502 (49%), Gaps = 27/502 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +L +SA       G  LH   IK F   D+ +V           SL+  Y+K    ++
Sbjct: 97  SSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSV---------GTSLVDTYMKGSNFKD 146

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
             K+FD+M  R+ V+W T++SG+ RN   D     F R    G  Q +  +F   L    
Sbjct: 147 GRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG-TQPNSFTFAAALGVLA 205

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
              +      +H +V   G ++ + V N+LI  Y KCG+    R +F +  V++V+TW +
Sbjct: 206 EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 265

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG   N L  E L +F  M L  +  +  ++ S +  C+ L+ L    Q+H  + K  
Sbjct: 266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              D  I +ALM  YSKC ++ DA ++F E     + VS T ++ GF QN  +EEA+ LF
Sbjct: 326 FLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLF 385

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M + G+  +    S +L    V +      ++H+ ++K+++  +  V   L++ Y K 
Sbjct: 386 SEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL 441

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +E++ KVFS +  ++ V+W++M+A +A+ G    A++++ E+   G++P + TF S+L
Sbjct: 442 GKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSIL 501

Query: 467 HACSHVGL-VNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERM 521
           + C+     + +G +F         I  R +   CV    + M  + G +  A    +R 
Sbjct: 502 NVCAATNASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ 556

Query: 522 PVKPDVLVWQALLGACSIHGDS 543
             K D++ W +++   + HG +
Sbjct: 557 REK-DLVSWNSMISGYAQHGQA 577



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 236/458 (51%), Gaps = 24/458 (5%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           ++ NA  LFD  P RD  S+ +++ GF R+G        F     LG  ++D + F+ +L
Sbjct: 42  RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGM-EMDCSIFSSVL 100

Query: 164 ----SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
               + CD     L  + +HC     G+ ++V+VG +L+ +Y K  +   GRKVF EM+ 
Sbjct: 101 KVSATLCD----ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKE 156

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS--VMACSGLQALCEGR 277
           RNV+TWT +ISG  +N + +E L LF++M      PNS T+ ++  V+A  G+     G 
Sbjct: 157 RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG--RGL 214

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H ++ K  L   + + ++L+++Y KCG+V  A  +F+  E    V+   ++ G+A NG
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
            + EA+ +F  M    + +  +  ++V+ +      L   +Q+H  ++K  F  +  +  
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334

Query: 398 GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            L+  YSKC  + D++++F  +    N VSW +MI+ F ++    +A++L+ EMK +GV 
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P + T+  +L A   +       + +K+  E       A     ++D   + G + EA  
Sbjct: 395 PNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTA-----LLDAYVKLGKVEEAAK 449

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
               +  K D++ W A+L   +  G++E    AA K+F
Sbjct: 450 VFSGIDDK-DIVAWSAMLAGYAQTGETE----AAIKMF 482



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 154/277 (55%), Gaps = 13/277 (4%)

Query: 205 GSSSSGR-----KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSL 258
           G+ SS R      +F +   R+  ++ +++ G  ++   +E  +LF+ +H LG+    S+
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 259 TYLSSVMACSGLQALCE---GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
              SSV+  S    LC+   GRQ+H    K     D+ + ++L+D Y K  + +D  ++F
Sbjct: 96  --FSSVLKVSA--TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVF 151

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +  +E + V+ T ++ G+A+N   +E + LF++M   G + +    +A LGV   +   G
Sbjct: 152 DEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGG 211

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G Q+H++++K+       V+N LIN+Y KCG++  +  +F +   ++ V+WNSMI+ +A
Sbjct: 212 RGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +G   +AL ++  M+L  V  ++ +F S++  C+++
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANL 308


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/554 (37%), Positives = 317/554 (57%), Gaps = 1/554 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N L+  Y KC ++  A KLFD M  R+ VSW TM+SG+++N         F    +
Sbjct: 256 TSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQ 315

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G +Q D  + T IL++C         + IH  V     E +  V NALI  Y KC   +
Sbjct: 316 AG-WQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLT 374

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R VF  +   + I++ A+I G  +N+   E + +F +M    + P+ LT++S +   S
Sbjct: 375 EARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSS 434

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              A+   +QIHG++ K     DL   SAL+D+YSKC  V DA  +F      D V    
Sbjct: 435 SQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNS 494

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G AQN   EEA++LF +++ +G+  +     A++ V     S+  G+Q H+ IIK+ 
Sbjct: 495 MIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAG 554

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             ++P V+N LI+MY+KCG +++   +F      + + WNSMI  +A+HG+  +AL+++ 
Sbjct: 555 VDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFR 614

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M    VEP  VTF+ +L AC+H G V +G+    SM   + I P  EHYA VV++ GR+
Sbjct: 615 LMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRS 674

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L  A+ FIERMP+KP   VW++LL AC + G++E+G+YAAE   LA P    PY+L++
Sbjct: 675 GKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLS 734

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+  G W +     ++M   G  KETG SWIE+ K+VH+F+V  + HP+A+ I+ VL 
Sbjct: 735 NIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGREHPEAELIYSVLD 794

Query: 629 ELLRLMIDEGYVPN 642
           EL  L+ + GYVP+
Sbjct: 795 ELTSLIKNLGYVPD 808



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 252/486 (51%), Gaps = 19/486 (3%)

Query: 62  LGPSLHASFIKTFEPFD-NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           LG  +H   +K     D + NVY       +  +L++ Y K   M  A+ +F  +P+R  
Sbjct: 138 LGEQVHGIAVK----LDLDANVY-------VGTALINLYAKLGCMDEAMLVFHALPVRTP 186

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           V+WNT+++G+ + G   +    F R + +   + D+      +SAC         + IH 
Sbjct: 187 VTWNTVITGYAQIGCGGVALELFDR-MGIEGVRPDRFVLASAVSACSALGFLEGGRQIHG 245

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
             Y    E + +V N LI  Y KC   S+ RK+F  M  RN+++WT +ISG +QN    E
Sbjct: 246 YAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAE 305

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            + +F  M      P+     S + +C  L A+ +GRQIH  + K  L++D  +++AL+D
Sbjct: 306 AITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALID 365

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+KC  + +A  +F+   E D +S   ++ G+++N    EA+ +F +M      + P++
Sbjct: 366 MYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRM--RFFSLRPSL 423

Query: 361 VS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           ++  ++LGV     ++ L KQIH LIIKS  + + +  + LI++YSKC  + D+  VF+ 
Sbjct: 424 LTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNM 483

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ V WNSMI   A++  G +A++L+ ++ L G+ P + TF++L+   S +  +  G
Sbjct: 484 LHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHG 543

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            +F   + +   +         ++DM  + G + E R   E      DV+ W +++   +
Sbjct: 544 QQFHAWIIKA-GVDNDPHVSNALIDMYAKCGFIKEGRMLFES-TCGEDVICWNSMITTYA 601

Query: 539 IHGDSE 544
            HG +E
Sbjct: 602 QHGHAE 607



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 245/466 (52%), Gaps = 14/466 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL  Y    ++R+A  LFD MP R+ VSW +++S + ++G  D     F    +    
Sbjct: 57  NLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCE 116

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++     +L AC +S+   + + +H +      +  V VG ALI  Y K G       
Sbjct: 117 VPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAML 176

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + VR  +TW  VI+G  Q       L+LF +M +  + P+     S+V ACS L  
Sbjct: 177 VFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGF 236

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQIHG  ++ A ++D  + + L+D+Y KC  +  A ++F+  E  + VS T ++ G
Sbjct: 237 LEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISG 296

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + QN F  EA+ +F  M +AG + D    +++L   G   ++  G+QIH+ +IK+D  ++
Sbjct: 297 YMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEAD 356

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V N LI+MY+KC  L ++  VF  +A  +++S+N+MI  ++++ +  +A+ +++ M+ 
Sbjct: 357 EYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRF 416

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVGRA 508
             + P+ +TF+SLL   S    +    +     +KS T +   +  A     ++D+  + 
Sbjct: 417 FSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASA-----LIDVYSKC 471

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            L+ +A++    +  K D+++W +++     H  +E G+ A  KLF
Sbjct: 472 SLVNDAKTVFNMLHYK-DMVIWNSMIFG---HAQNEQGEEAI-KLF 512



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 184/376 (48%), Gaps = 7/376 (1%)

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            L  ++  IH    + G  +++ + N L+  Y   G     R +F  M  RN+++W +VI
Sbjct: 32  RLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVI 91

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLIN-PNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           S   Q+   +  + LFV         PN     S + AC+  +A+  G Q+HGI  KL L
Sbjct: 92  SMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDL 151

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            +++ + +AL+++Y+K G +++A  +F        V+   ++ G+AQ G    A++LF +
Sbjct: 152 DANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDR 211

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M   G+  D  ++++ +        L  G+QIH    +S   ++  V N LI++Y KC  
Sbjct: 212 MGIEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSR 271

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L  + K+F  M  RN VSW +MI+ + ++    +A+ ++  M   G +P      S+L++
Sbjct: 272 LSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNS 331

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPD 526
           C  +  + +G +       V +    A+ Y    ++DM  +   L EAR+  + +  + D
Sbjct: 332 CGSLAAIWQGRQI---HAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDAL-AEDD 387

Query: 527 VLVWQALLGACSIHGD 542
            + + A++   S + D
Sbjct: 388 AISYNAMIEGYSKNRD 403



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G D    L   IH+    +    + F+ N L+  YS  G L D+  +F RM  RN VSW 
Sbjct: 29  GGDRLRRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWG 88

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVE-PTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           S+I+ + +HG    A+ L+   +    E P +    S+L AC+    V+ G        +
Sbjct: 89  SVISMYTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLG-------EQ 141

Query: 488 VHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           VH I+ + +  A V      +++  + G + EA      +PV+  V  W  ++
Sbjct: 142 VHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV-TWNTVI 193



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 12/107 (11%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           FH G   HA  IK         V N P+ +   N+L+  Y KC  ++    LF+     D
Sbjct: 541 FH-GQQFHAWIIKA-------GVDNDPHVS---NALIDMYAKCGFIKEGRMLFESTCGED 589

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            + WN+M++ + ++G  +     F R +     + +  +F  +LSAC
Sbjct: 590 VICWNSMITTYAQHGHAEEALQVF-RLMGEAEVEPNYVTFVGVLSAC 635


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 345/602 (57%), Gaps = 11/602 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L   A  G+   G  +H+  I+     D            I   L+  Y KC    
Sbjct: 333 LSTVLKGCANSGNLRAGQIVHSLAIRIGCELDE----------FISCCLVDMYSKCGLAG 382

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A+K+F  +   D VSW+ +++   + G+       FKR    G         +++ +A 
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           D  +L    + IH  V   G+E + TV NAL+T Y K GS   G +VF     R++I+W 
Sbjct: 443 DLGDL-YYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWN 501

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A++SG   N+  + GL++F +M     NPN  T++S + +CS L  +  G+Q+H  + K 
Sbjct: 502 ALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 561

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
           +L  +  + +AL+DMY+K   +EDA  IF    + D  + TVI+ G+AQ+G  E+A++ F
Sbjct: 562 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCF 621

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++M + G++ +   +++ L       +L  G+Q+HS+ IK+  + + FV + L++MY+KC
Sbjct: 622 IQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKC 681

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +ED+  VF  +  R++VSWN++I  +++HG G KAL+ +E M  EG  P +VTF+ +L
Sbjct: 682 GCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVL 741

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH+GL+ +G +   S+++++ I+P  EHYAC+VD++GRAG   E  SFIE M +  +
Sbjct: 742 SACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSN 801

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           VL+W+ +LGAC +HG+ E G+ AA KLF  +P+  + YIL++N+++  G W +       
Sbjct: 802 VLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRAL 861

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           M   GV KE G SW+E+  QVH F+  D  HP+   IH  L +L + ++  GY PN   +
Sbjct: 862 MSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHV 921

Query: 647 LH 648
           LH
Sbjct: 922 LH 923



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 255/520 (49%), Gaps = 24/520 (4%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
              G  +HA  IK  +  D            + ++L+  Y KC +M  A ++F  MP ++
Sbjct: 245 LEFGKQVHAEAIKVGDFSD----------LFVGSALVDLYAKCGEMVLAERVFLCMPKQN 294

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKR--SLELGFYQLDQASFTIILSACDRSELSLVSKM 177
            VSWN +++GF + G+ +     F R    E+ F +    + + +L  C  S      ++
Sbjct: 295 AVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKF---TLSTVLKGCANSGNLRAGQI 351

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H L    G E +  +   L+  Y KCG +    KVF  +   +V++W+A+I+ L Q   
Sbjct: 352 VHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQ 411

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E  ++F +M H G+I PN  T  S V A + L  L  G  IH  + K   + D  + +
Sbjct: 412 SREAAEVFKRMRHSGVI-PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCN 470

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+ MY K GSV+D  ++FE     D +S   +L GF  N   +  +++F +M+  G   
Sbjct: 471 ALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF-- 528

Query: 357 DPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           +PNM +  ++L      + + LGKQ+H+ I+K+    N FV   L++MY+K   LED+  
Sbjct: 529 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAET 588

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F+R+  R+  +W  ++A +A+ G G KA++ + +M+ EGV+P + T  S L  CS +  
Sbjct: 589 IFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 648

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++ G + L SM      S      + +VDM  + G + +A    + + V  D + W  ++
Sbjct: 649 LDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTII 706

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              S HG       A E + L +   P     +  + +CS
Sbjct: 707 CGYSQHGQGGKALKAFEAM-LDEGTVPDEVTFIGVLSACS 745



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 250/535 (46%), Gaps = 30/535 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +L   A +G  + G ++H   IK+    D+           +WNSL++ Y KC     
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSH----------LWNSLVNVYAKCGSANY 181

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+F ++P RD VSW  +++GF+  G        F      G  + ++ ++   L AC 
Sbjct: 182 ACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV-EANEFTYATALKACS 240

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   K +H      G   ++ VG+AL+  Y KCG      +VF  M  +N ++W A
Sbjct: 241 MCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNA 300

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +++G  Q    E+ L LF +M    IN +  T  + +  C+    L  G+ +H +  ++ 
Sbjct: 301 LLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIG 360

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            + D  I   L+DMYSKCG   DA ++F   E+ D VS + I+    Q G   EA ++F 
Sbjct: 361 CELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFK 420

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +M  +G  + PN  + +  +    T LG    G+ IH+ + K  F  +  V N L+ MY 
Sbjct: 421 RMRHSG--VIPNQFT-LASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYM 477

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K G ++D  +VF     R+ +SWN++++ F  +      L ++ +M  EG  P   TF+S
Sbjct: 478 KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFIS 537

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMP 522
           +L +CS +  V+ G +      ++ + S     +    +VDM  +   L +A +   R+ 
Sbjct: 538 ILRSCSSLSDVDLGKQV---HAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL- 593

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA---QPDSPAPYILMANIYSCS 574
           +K D+  W  ++   +  G  E     A K F+    +   P  + L +++  CS
Sbjct: 594 IKRDLFAWTVIVAGYAQDGQGE----KAVKCFIQMQREGVKPNEFTLASSLSGCS 644



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 218/443 (49%), Gaps = 29/443 (6%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  V   G   +  + N+L+  Y KCGS++   KVFGE+  R+V++WTA+I+G V  
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 207

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
                 + LF +M    +  N  TY +++ ACS    L  G+Q+H    K+   SDL + 
Sbjct: 208 GYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVG 267

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           SAL+D+Y+KCG +  A ++F    + + VS   +L GFAQ G  E+ + LF +M  + I 
Sbjct: 268 SALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEIN 327

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                +S VL       +L  G+ +HSL I+     + F++  L++MYSKCG   D++KV
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F R+   + VSW+++I    + G   +A E+++ M+  GV P   T  SL+ A + +G +
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 476 NKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
             G         V +     ++  C  +V M  + G + +     E    + D++ W AL
Sbjct: 448 YYGESIHAC---VCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNR-DLISWNAL 503

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           L     +   + G     ++ LA+  +P  Y  ++ + SCS                   
Sbjct: 504 LSGFHDNETCDTGLRIFNQM-LAEGFNPNMYTFISILRSCS------------------- 543

Query: 594 KETGISWIEIEKQVHSFVVDDKM 616
               +S +++ KQVH+ +V + +
Sbjct: 544 ---SLSDVDLGKQVHAQIVKNSL 563



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 202/426 (47%), Gaps = 27/426 (6%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ N   ++ L+S +   G  + G S+HA   K    +DN           + N+L++ Y
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDN----------TVCNALVTMY 476

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           +K   +++  ++F+    RD +SWN ++SGF  N   D G   F + L  GF   +  +F
Sbjct: 477 MKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGF-NPNMYTF 535

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             IL +C       + K +H  +     +    VG AL+  Y K         +F  +  
Sbjct: 536 ISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK 595

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R++  WT +++G  Q+   E+ +K F++M    + PN  T  SS+  CS +  L  GRQ+
Sbjct: 596 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 655

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H +  K     D+ + SAL+DMY+KCG VEDA  +F+     D VS   I+ G++Q+G  
Sbjct: 656 HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQG 715

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVN 396
            +A++ F  M+  G    P+ V+  +GV    + +GL   GK+ H   +   +   P + 
Sbjct: 716 GKALKAFEAMLDEGTV--PDEVT-FIGVLSACSHMGLIEEGKK-HFNSLSKIYGITPTIE 771

Query: 397 N--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEE--MK 451
           +   ++++  + G   +       M    N + W +++ A   HGN    +E  E   MK
Sbjct: 772 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGN----IEFGERAAMK 827

Query: 452 LEGVEP 457
           L  +EP
Sbjct: 828 LFELEP 833



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 9/294 (3%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y   +  C+    L EG+ IHG + K  +  D  + ++L+++Y+KCGS   A ++F    
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E D VS T ++ GF   G+   A+ LF +M + G+E +    +  L    +   L  GKQ
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+  IK    S+ FV + L+++Y+KCG++  + +VF  M  +N+VSWN+++  FA+ G+
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY- 498
             K L L+  M    +  +  T  ++L  C++ G +  G + + S+    RI    + + 
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSL--AIRIGCELDEFI 367

Query: 499 -ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
             C+VDM  + GL  +A     R+   PDV+ W A++      G S   + AAE
Sbjct: 368 SCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAIITCLDQKGQS---REAAE 417


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 330/562 (58%), Gaps = 6/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   L+  Y KC +   A +LF  +  RD V+W+ +++  ++ G  +     F+  ++ 
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE-MQN 423

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + ++ +   IL AC    L  + K IHC       + +++ G AL++ Y KCG  ++
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F  M  R+++TW ++I+G  Q       + +F K+ L  INP++ T +  V AC+ 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTV 328
           L  L +G  IHG++ KL  +SD  +++AL+DMY+KCGS+  A  +F   +   D V+  V
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIK 386
           I+  + QNG  +EA+  F +M        PN V+  +VL       +   G   H+ II+
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFH--PNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F SN  V N LI+MY+KCG L+ S K+F+ M  +++VSWN+M++ +A HG+G +A+ L
Sbjct: 662 MGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M+   V+   V+F+S+L AC H GLV +G +   SM++ + I P  EHYAC+VD++G
Sbjct: 722 FSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGL  E   FI+ MPV+PD  VW ALLG+C +H + ++G+ A + L   +P +PA +++
Sbjct: 782 RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 841

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +++IY+ SGRW +  KA  +M ++G+ K  G SW+E++ +VH+F V DK HPQ +++H +
Sbjct: 842 LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 901

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
              LL  M   GYVP++  +L 
Sbjct: 902 WNTLLEKMEKIGYVPDRSCVLQ 923



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 242/465 (52%), Gaps = 6/465 (1%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+    ++ + N L+  Y KC  +  A ++FD M  +D VSW TM++G+  NG F     
Sbjct: 256 VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 142 FFKRSLELGFYQLDQAS-FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
            F + ++LG  ++++ S  +  L+A +  +L    K IH        + ++ V   L+  
Sbjct: 316 LFDK-MKLGNVRINKVSAVSAFLAAAETIDLE-KGKEIHGCALQQRIDSDILVATPLMVM 373

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCG +   +++F  ++ R+++ W+A+I+ LVQ    EE L LF +M    + PN +T 
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S + AC+ L  L  G+ IH    K  + SDL   +AL+ MY+KCG    A   F     
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D V+   ++ G+AQ G    A+ +F K+  + I  D   +  V+    +   L  G  I
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           H LI+K  F S+  V N LI+MY+KCG L  +  +F++    ++ V+WN +IAA+ ++G+
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+  + +M+LE   P  VTF+S+L A +++    +GM F   + ++  +S      +
Sbjct: 614 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 673

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            ++DM  + G L  +      M  K D + W A+L   ++HG  +
Sbjct: 674 -LIDMYAKCGQLDYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGD 716



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 230/444 (51%), Gaps = 8/444 (1%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y K   ++ A ++FD MP RD V+WN M++G  ++ +      FF+    +G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             +   +    C  S + L  + IH  V+   +   V+  N LI  Y KCG     R+VF
Sbjct: 230 SVSLLNLFPGICKLSNIELC-RSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVF 286

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  ++ ++W  +++G   N  + E L+LF KM LG +  N ++ +S+ +A +    L 
Sbjct: 287 DQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLE 346

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G++IHG   +  + SD+ + + LM MY+KCG  E A Q+F   +  D V+ + I+    
Sbjct: 347 KGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           Q G+ EEA+ LF +M     ++ PN V+  ++L      + L LGK IH   +K+D  S+
Sbjct: 407 QTGYPEEALSLFQEMQNQ--KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                 L++MY+KCG    ++  F+RM+ R+ V+WNS+I  +A+ G+ + A++++ +++L
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             + P   T + ++ AC+ +  +++G      + ++   S      A ++DM  + G L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA-LIDMYAKCGSLP 583

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
            A     +     D + W  ++ A
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 262/517 (50%), Gaps = 33/517 (6%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP--SLHASFIKT-FEPFDNQNVYNVPNA 88
           P+ S+S     NY+   RLLS S K    HL P   +HA  I + F+   + ++ ++ N 
Sbjct: 22  PSLSSSTYT--NYLHYPRLLS-SCK----HLNPLLQIHAQIIVSGFK--HHHSITHLIN- 71

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
                 L S + KCD  R+   +FD  P    + WN+M+  + R+ +++     +   +E
Sbjct: 72  ------LYSLFHKCDLARS---VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE 122

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            G  + D+ +FT +L AC    L+L   +  H  +   G E +V +G  L+  Y K G  
Sbjct: 123 KGL-EPDKYTFTFVLKAC-TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDL 180

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF +M  R+V+ W A+I+GL Q++   E +  F  M L  + P+S++ L+     
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGI 240

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L  +   R IHG +++    S   + + L+D+YSKCG V+ A ++F+   + D VS  
Sbjct: 241 CKLSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWG 298

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLII 385
            ++ G+A NG   E ++LF KM    + I  N VSAV        ++ L  GK+IH   +
Sbjct: 299 TMMAGYAHNGCFVEVLELFDKMKLGNVRI--NKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +    S+  V   L+ MY+KCG+ E + ++F  +  R+ V+W+++IAA  + G   +AL 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L++EM+ + ++P  VT +S+L AC+ + L+  G + +   T    +         +V M 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMY 475

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            + G    A +   RM  + D++ W +L+   +  GD
Sbjct: 476 AKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 15/146 (10%)

Query: 30  QDPTSSTSKLVLDNY----VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85
           ++  SS  ++ L+N+    V    +L  +A    F  G + HA  I+             
Sbjct: 615 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM----------GF 664

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
            + T++ NSL+  Y KC Q+  + KLF++M  +DTVSWN M+SG+  +G  D     F  
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 146 SLELGFYQLDQASFTIILSACDRSEL 171
             E    Q+D  SF  +LSAC  + L
Sbjct: 725 MQE-SQVQIDSVSFVSVLSACRHAGL 749


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/560 (33%), Positives = 329/560 (58%), Gaps = 6/560 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + N+L++FY K ++ ++A+ +FD MP RD +SWN+M+SG   NG +D     F R + L
Sbjct: 232 AVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVR-MWL 290

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              +LD A+   +L AC    L  + +++H      G+  + ++ N L+  Y  C    S
Sbjct: 291 EGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRS 350

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F  M  +NV++WTA+I+   +  LY++   LF +M L    P+     S++ A +G
Sbjct: 351 TNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAG 410

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + L  G+ +HG   +  ++  L + +ALM+MY KCG++E+A  IF+     D +S   +
Sbjct: 411 NELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTL 470

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           + G+++N    EA  LF +M+   +++ PN V+   +L      +SL  G+++H+  ++ 
Sbjct: 471 IGGYSRNNLANEAFSLFTEML---LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRR 527

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +  + FV N LI+MY KCG L  + ++F R++ +N +SW  M+A +  HG G  A+ L+
Sbjct: 528 GYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALF 587

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           E+M++ G+ P   +F ++L+ACSH GL ++G  F  +M + H+I PR +HY C+VD++  
Sbjct: 588 EQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLIN 647

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G L EA  FI+ MP++PD  +W +LL  C IH + ++ +  AE++F  +P++   Y+L+
Sbjct: 648 TGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLL 707

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           ANIY+ + RW+   K   ++   G+ + TG SWIE + +VH F+ D++ HPQ   I   L
Sbjct: 708 ANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFL 767

Query: 628 AELLRLMIDEGYVPNKRFIL 647
            E+ + M +EG+ P K++ L
Sbjct: 768 NEVAKRMQEEGHDPKKKYAL 787



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 241/495 (48%), Gaps = 22/495 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
            V+   L+  YLKC  + NA ++FD+MP + D   W  ++SG+ + G+   G   F++  
Sbjct: 129 NVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMH 188

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G  + D  + + +L            +++H L+   G+  +  VGNAL+  Y K   +
Sbjct: 189 CCGV-RPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT 247

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                VF  M  R+VI+W ++ISG   N LY++ ++LFV+M L     +S T LS + AC
Sbjct: 248 KDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  GR +HG   K    S   + + L+DMYS C       +IF    + + VS T
Sbjct: 308 AELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWT 367

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  + + G  ++   LF +M   G   D   +++ L  F  +  L  GK +H   I++
Sbjct: 368 AMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN 427

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
                  V N L+ MY KCG++E++  +F  +  ++ +SWN++I  ++R+    +A  L+
Sbjct: 428 GMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLF 487

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CV 501
            EM L+ + P  VT   +L A + +  + +G        E+H  + R  +         +
Sbjct: 488 TEMLLQ-LRPNAVTMTCILPAAASLSSLERG-------REMHAYALRRGYLEDDFVANAL 539

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPD 559
           +DM  + G L+ AR   +R+  K +++ W  ++    +HG         E++ ++   PD
Sbjct: 540 IDMYVKCGALLLARRLFDRLSNK-NLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPD 598

Query: 560 SPAPYILMANIYSCS 574
           + +     A +Y+CS
Sbjct: 599 AAS---FSAILYACS 610



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 162/326 (49%), Gaps = 19/326 (5%)

Query: 45  VDISRLLSISAKEGHFHL---GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           +D + LLS+       HL   G  +H   +KT   F +Q        T + N LL  Y  
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKT--GFISQ--------TSLANVLLDMYSN 344

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF--YQLDQASF 159
           C   R+  K+F +M  ++ VSW  M++ + R G +D   G F+   E+G    + D  + 
Sbjct: 345 CSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQ---EMGLEGTRPDIFAI 401

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T  L A   +EL    K +H      G E+ + V NAL+  Y KCG+    + +F  +  
Sbjct: 402 TSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVS 461

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +++I+W  +I G  +N L  E   LF +M L L  PN++T    + A + L +L  GR++
Sbjct: 462 KDMISWNTLIGGYSRNNLANEAFSLFTEMLLQL-RPNAVTMTCILPAAASLSSLERGREM 520

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H    +     D  + +AL+DMY KCG++  A ++F+     + +S T+++ G+  +G  
Sbjct: 521 HAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRG 580

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVL 365
            +A+ LF +M  +GI  D    SA+L
Sbjct: 581 RDAIALFEQMRVSGIAPDAASFSAIL 606



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I  L ++   EE L L     LG    +  +Y + +  CS +++L  G++ H ++   +L
Sbjct: 68  IQRLCRSGDLEEALGL-----LGSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSL 122

Query: 289 QSD---LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM-TVILVGFAQNGFEEEAMQ 344
             D     +   L+ MY KCG +E+A ++F+   ++  V + T ++ G+A+ G   E + 
Sbjct: 123 GRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVL 182

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF KM   G+  D   +S VL       S+  G+ +H L+ K  F S   V N L+  Y+
Sbjct: 183 LFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYA 242

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K    +D+I VF  M  R+ +SWNSMI+    +G   KA+EL+  M LEG E    T LS
Sbjct: 243 KSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLS 302

Query: 465 LLHACSHVGLV 475
           +L AC+ + L+
Sbjct: 303 VLPACAELHLL 313


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 325/551 (58%), Gaps = 11/551 (1%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +A K+FD M  ++ V+W  M++   + G  D     F   L    Y  D+ + T ++S
Sbjct: 211 LESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLIS 270

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C   +   + K +H  V   G   ++ VG +L+  Y KCG     RKVF  MR  NV++
Sbjct: 271 VCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMS 330

Query: 225 WTAVISGLVQNQL-YE-EGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           WTA+++G V+    YE E +++F  M L G + PN  T+   + AC+ L     G Q+HG
Sbjct: 331 WTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHG 390

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI----LVGFAQNG 337
              KL L +  C+ + L+ +Y+K G +E A + F+   E + VS TV+    +  F  N 
Sbjct: 391 QTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNS 450

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E+ +   V+ V +G+       S + G   + T +G G+QIH++++K  F ++  VNN
Sbjct: 451 --EQDLDREVEYVGSGVS-SFTYASLLSGAACIGT-IGKGEQIHAMVVKIGFRTDLSVNN 506

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MYSKCG+ E +++VF+ M   N ++W S+I  FA+HG   KALEL+  M   GV+P
Sbjct: 507 ALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKP 566

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            DVT++++L ACSHVGL+++  +   SM + H I PR EHYAC+VD++GR+GLL EA  F
Sbjct: 567 NDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEF 626

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           I  MP   D LVW+  LG+C +H ++++G++AA+ +   +P  PA YIL++N+Y+  GRW
Sbjct: 627 INSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRW 686

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           ++ A   K MK+  + KE G SWIE+E QVH F V D +HP+A  I+  L EL   + + 
Sbjct: 687 EDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNV 746

Query: 638 GYVPNKRFILH 648
           GYVPN  F+LH
Sbjct: 747 GYVPNTDFVLH 757



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/530 (27%), Positives = 252/530 (47%), Gaps = 31/530 (5%)

Query: 25  ITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN 84
           IT +    T ST     +  +  S LL    +  + HLG  LH     +          N
Sbjct: 36  ITTLNLTDTESTHN---NKLITSSLLLKQCIRTKNTHLGKLLHHKLTTS----------N 82

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDM--PMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           +P  T++ NSL++ Y K +    A  +F  M    RD VS+++++S F  N         
Sbjct: 83  LPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEM 142

Query: 143 FKR-SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITS 200
           F +  L+ G Y  ++  FT ++ AC +         +   V   GY +  V VG  LI  
Sbjct: 143 FDQLLLQDGVYP-NEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDM 201

Query: 201 YFKCGSSS---SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINP 255
           + K  S +   S RKVF +MR +NV+TWT +I+ L Q    +E + LF++M +  G + P
Sbjct: 202 FVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYV-P 260

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           +  T    +  C+ +Q L  G+++H  + +  L  DLC+  +L+DMY+KCG V++A ++F
Sbjct: 261 DRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVF 320

Query: 316 EFAEELDGVSMTVILVGFAQ--NGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVD 371
           +   E + +S T ++ G+ +   G+E EAM++F  M+  G  + PN    S VL      
Sbjct: 321 DGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQG-GVAPNCFTFSGVLKACASL 379

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
                G+Q+H   IK   ++   V NGL+++Y+K G +E + K F  +  +N VS   + 
Sbjct: 380 PDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVD 439

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
               +  N     +L  E++  G   +  T+ SLL   + +G + KG +    + ++   
Sbjct: 440 DTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFR 499

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +  + + A ++ M  + G    A      M    +V+ W +++   + HG
Sbjct: 500 TDLSVNNA-LISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHG 547


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/562 (37%), Positives = 317/562 (56%), Gaps = 7/562 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + +SL+ FY +   + +A  LFD MP +D V WN M++G+++NG++D   G F   R  E
Sbjct: 184 VGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTE 243

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN--ALITSYFKCGS 206
                 +  +F  +LS C    +      +H LV   G E +  V N  ALI  YFKC  
Sbjct: 244 T---NPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRD 300

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RK+F +    +++  TA+ISG V N +    L++F  +    +  NS+T  S + A
Sbjct: 301 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 360

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL AL  G+++HG + K        + SA+MDMY+KCG ++ A Q F    + D V  
Sbjct: 361 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCW 420

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++   +QNG  EEA+ LF +M  AG + D   +SA L       +L  GK+IH+ +++
Sbjct: 421 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 480

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F S+ F  + LI+MYSKCG+L+ + +VF  M  +N VSWNS+IAA+  HG    +L L
Sbjct: 481 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNL 540

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M  +G++P  VTFL+++ AC H G V++G+ + + MTE   I  R EHYAC+VD+ G
Sbjct: 541 FHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFG 600

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L EA   I  MP  PD  VW  LLGAC +HG+ E+ + A+  LF   P +   Y+L
Sbjct: 601 RAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVL 660

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+++ +G+W+   K    MKE GV K  G SWI++    H FV  D+ HPQ+  I+ +
Sbjct: 661 LSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQIYLL 720

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  L   +  EGYVP     +H
Sbjct: 721 LKNLFLELRKEGYVPQLYLPMH 742



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 240/456 (52%), Gaps = 9/456 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   LL  Y+ C    +A  +F  + +  +  WN M+ GF   G+FD    F+ + L  
Sbjct: 82  ILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    D+ +F  ++ AC       + +++H  +   G+E +V VG++LI  Y + G    
Sbjct: 142 GTLP-DKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHD 200

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F  M  ++ + W  +++G V+N  ++    +F++M     NPNS+T+   +  C+ 
Sbjct: 201 ARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCAS 260

Query: 270 LQALCEGRQIHGILWKLALQSDLCIES--ALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
              +  G Q+HG++    L+ D  + +  AL+D+Y KC  VE A +IF+    +D V  T
Sbjct: 261 EIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCT 320

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G+  NG    A+++F  +++  +  +   +++VL       +L LGK++H  I+K+
Sbjct: 321 AMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN 380

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               + +V + +++MY+KCG L+ + + F  ++ +++V WNSMI + +++G   +A++L+
Sbjct: 381 GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLF 440

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMV 505
            +M + G +   V+  + L AC+++  ++ G E    M    R + R++ +A   ++DM 
Sbjct: 441 RQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMM---RGAFRSDLFAESALIDMY 497

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + G L  A    + M  K +V  W +++ A   HG
Sbjct: 498 SKCGNLDLACRVFDTMEEKNEV-SWNSIIAAYGNHG 532



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 6/284 (2%)

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S +  C+    L +GRQ H  +    +  +  + + L+ MY  CG+  DA  IF     
Sbjct: 50  VSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRL 109

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
                   ++ GF   G  + A+  + KM+  G   D      V+   G   S+ LG+ +
Sbjct: 110 WCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVV 169

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H  I    F  + FV + LI  YS+ G + D+  +F RM  ++ V WN M+  + ++G+ 
Sbjct: 170 HDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDW 229

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF--LKSMTEVHRISPRAEHY 498
             A  ++ EM+     P  VTF  +L  C+   ++N G +   L   + +   SP A  +
Sbjct: 230 DNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTF 289

Query: 499 ACVVDMVGRAGLLIEARS-FIERMPVKPDVLVWQALLGACSIHG 541
           A ++D+  +   +  AR  F +R PV  D++V  A++    ++G
Sbjct: 290 A-LIDIYFKCRDVEMARKIFDQRTPV--DIVVCTAMISGYVLNG 330


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 319/552 (57%), Gaps = 2/552 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +++S Y KC Q+ NA K+F+ M  +D VSW T+V+G+ +NG          +  E G
Sbjct: 182 VMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAG 241

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   IL A    +   + + IH   +  G+E  V V NAL+  YFKCGS+   
Sbjct: 242 -QKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIA 300

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  MR + V++W  +I G  QN   EE    F+KM      P  +T +  ++AC+ L
Sbjct: 301 RLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANL 360

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G  +H +L KL L S++ + ++L+ MYSKC  V+ A  IF   E+ + V+   ++
Sbjct: 361 GDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMI 419

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +G+AQNG  +EA+ LF  M   GI++D   +  V+      +     K IH L +++   
Sbjct: 420 LGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMD 479

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +N FV+  L++MY+KCG ++ + K+F  M  R+ ++WN+MI  +  HG G + L+L+ EM
Sbjct: 480 NNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEM 539

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +   V+P D+TFLS++ ACSH G V +G+   KSM E + + P  +HY+ +VD++GRAG 
Sbjct: 540 QKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQ 599

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A +FI+ MP+KP + V  A+LGAC IH + E+G+ AA+KLF   PD    ++L+ANI
Sbjct: 600 LDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANI 659

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +  W + AK    M++ G+ K  G SW+E+  ++H+F      HP++  I+  L  L
Sbjct: 660 YASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETL 719

Query: 631 LRLMIDEGYVPN 642
              +   GYVP+
Sbjct: 720 GDEIKAAGYVPD 731



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 231/458 (50%), Gaps = 10/458 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  +    ++S + K      A ++F+ + ++  V ++ M+ G+ +N        FF R 
Sbjct: 77  NEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRM 136

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +     +L    +  +L  C  +      + IH L+   G+E  + V  A+++ Y KC  
Sbjct: 137 M-CDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQ 195

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             +  K+F  M+ +++++WT +++G  QN   +  L+L ++M      P+S+T +S + A
Sbjct: 196 IDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPA 255

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            + ++AL  GR IHG  ++   +S + + +AL+DMY KCGS   A  +F+       VS 
Sbjct: 256 VADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSW 315

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSL 383
             ++ G AQNG  EEA   F+KM+  G E+ P  V+ ++GV     +LG    G  +H L
Sbjct: 316 NTMIDGCAQNGESEEAFATFLKMLDEG-EV-PTRVT-MMGVLLACANLGDLERGWFVHKL 372

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           + K    SN  V N LI+MYSKC  ++ +  +F+ +   N V+WN+MI  +A++G   +A
Sbjct: 373 LDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEA 431

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+  M+ +G++    T + ++ A +    VN+  +++  +     +         +VD
Sbjct: 432 LNLFCMMQSQGIKLDCFTLVGVITALADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVD 490

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           M  + G +  AR   + M  +  V+ W A++     HG
Sbjct: 491 MYAKCGAIKTARKLFDMMQER-HVITWNAMIDGYGTHG 527



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 158/293 (53%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  E      +I+ + K GS+S   +VF  + ++  + +  ++ G  +N    + L  F
Sbjct: 74  GFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFF 133

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           ++M    +      Y   +  C     L +GR+IHG++     +S+L + +A+M +Y+KC
Sbjct: 134 LRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKC 193

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             +++A+++FE  +  D VS T ++ G+AQNG  + A+QL ++M +AG + D   + ++L
Sbjct: 194 RQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSIL 253

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L +G+ IH    +S F S   V N L++MY KCG    +  VF  M  +  V
Sbjct: 254 PAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVV 313

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           SWN+MI   A++G   +A   + +M  EG  PT VT + +L AC+++G + +G
Sbjct: 314 SWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERG 366



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 158/303 (52%), Gaps = 15/303 (4%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QI   + K    ++   ++ ++ ++ K GS  +A ++FE  E    V   ++L G+A+N 
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              +A+  F++M+   + +     + +L + G +  L  G++IH LII + F SN FV  
Sbjct: 125 SLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMT 184

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            ++++Y+KC  ++++ K+F RM  ++ VSW +++A +A++G+  +AL+L  +M+  G +P
Sbjct: 185 AVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKP 244

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLL 511
             VT +S+L A +        M+ L+    +H  + R+   + V      +DM  + G  
Sbjct: 245 DSVTLVSILPAVA-------DMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSA 297

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
             AR   + M  K  V+ W  ++  C+ +G+SE   +A     L + + P    +M  + 
Sbjct: 298 RIARLVFKGMRSKT-VVSWNTMIDGCAQNGESEEA-FATFLKMLDEGEVPTRVTMMGVLL 355

Query: 572 SCS 574
           +C+
Sbjct: 356 ACA 358


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 330/598 (55%), Gaps = 14/598 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFI-KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++ ++   AK      G  LHA  I   + P            T + N L++ Y KC ++
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTP-----------CTFLTNHLVNMYSKCGEL 56

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
            +A+KLFD MP R+ VSW  M+SG  +N +F      F   + +      Q +F+  + A
Sbjct: 57  DHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFC-GMRICGEVPTQFAFSSAIRA 115

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C       + K +HCL    G   E+ VG+ L   Y KCG+     KVF EM  ++ ++W
Sbjct: 116 CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSW 175

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA+I G  +   +EE L  F KM    +  +     S++ AC  L+A   GR +H  + K
Sbjct: 176 TAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK 235

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV-SMTVILVGFAQNGFEEEAMQ 344
           L  +SD+ + +AL DMYSK G +E A  +F    E   V S T ++ G+ +    E+ + 
Sbjct: 236 LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLS 295

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +FV++ + GIE +    S+++       +L  G Q+H+ ++K +F  +PFV++ L++MY 
Sbjct: 296 VFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG LE +I+ F  +     ++WNS+++ F +HG G  A++++E M   GV+P  +TF+S
Sbjct: 356 KCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFIS 415

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           LL  CSH GLV +G+++  SM + + + P  EHY+CV+D++GRAG L EA+ FI RMP +
Sbjct: 416 LLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFE 475

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P+   W + LGAC IHGD EMGK AAEKL   +P +    +L++NIY+   +W++     
Sbjct: 476 PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVR 535

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
            RM++  V K  G SW+++  + H F  +D  HP+   I+  L  LL  +   GYVP 
Sbjct: 536 MRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPR 593



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 104/197 (52%), Gaps = 2/197 (1%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D N ++ V+  +     L  GKQ+H+L+I + +T   F+ N L+NMYSKCG+L+ ++K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  RN VSW +MI+  +++    +A+  +  M++ G  PT   F S + AC+ +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            G + +  +     I       + + DM  + G + +A    E MP K D + W A++  
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 537 CSIHGDSEMGKYAAEKL 553
            S  G+ E    A +K+
Sbjct: 182 YSKIGEFEEALLAFKKM 198


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 329/639 (51%), Gaps = 74/639 (11%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P   +NV+        WNSLLS + K  ++ +A  +F +MP RD VSW  MV G  R G 
Sbjct: 92  PLARRNVFT-------WNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           F             GF    Q + T +LS+C  ++   V + +H  V   G    V V N
Sbjct: 145 FGEAIKTLLDMTADGFTPT-QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNV-------------------------------IT 224
           +++  Y KCG S +   VF  M VR+V                               ++
Sbjct: 204 SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 263

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W A+I+G  QN L  + LKLF +M H   + P+  T  S + AC+ L  +  G+Q+H  +
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIF--------------------------EF 317
            +  +  +  + +AL+  Y+K GSVE+A +I                           E 
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 318 AEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A E+       D V+ T ++VG+ QNG  +EA+ LF  M+  G E +   ++AVL V   
Sbjct: 384 AREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNS 429
              L  GKQIH   I+S    +  V+N +I MY++ G    + ++F ++  R  +++W S
Sbjct: 444 LACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI A A+HG G +A+ L+EEM   GVEP  +T++ +L ACSH G VN+G  +   +   H
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
           +I+P   HYAC+VD++ RAGL  EA+ FI RMPV+PD + W +LL AC +H ++E+ + A
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEKL    P++   Y  +AN+YS  GRW + A+  K  KE  V KETG SW  I  ++H 
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F  DD +HPQ D ++ + A +   +   G+VP+ + +LH
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLH 722



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 166/365 (45%), Gaps = 32/365 (8%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQ------NVY----NVP 86
           S +  D +  I+ +LS  A  G+  +G  +HA  ++T   +++Q      + Y    +V 
Sbjct: 291 SSMAPDEFT-ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 87  NATVI-------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           NA  I             + +LL  Y+K   M +A ++F  M  RD V+W  M+ G+ +N
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G  D     F+  +  G  + +  +   +LS C         K IHC       E+  +V
Sbjct: 410 GRNDEAIDLFRSMITCG-PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSV 468

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
            NA+IT Y + GS    R++F ++  R   ITWT++I  L Q+   EE + LF +M    
Sbjct: 469 SNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAG 528

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           + P+ +TY+  + ACS    + EG++ +  I  +  +  ++   + ++D+ ++ G   +A
Sbjct: 529 VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEA 588

Query: 312 WQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
            + I     E D ++   +L     +   E A     K+    + IDPN   A   +  V
Sbjct: 589 QEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL----LSIDPNNSGAYSAIANV 644

Query: 371 DTSLG 375
            ++ G
Sbjct: 645 YSACG 649



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 31/321 (9%)

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG--KQIHSLIIKSDFTS-NPFVNNGLIN 401
           +  + VKAG+     + + +L  +G +T+ G G  +    L  +      N F  N L++
Sbjct: 48  IHARAVKAGLLASAYLCNNLLSYYG-ETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLS 106

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           M++K G L D+  VF+ M  R++VSW  M+    R G   +A++   +M  +G  PT  T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 462 FLSLLHAC--SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
             ++L +C  +  G V + +        +    P A     V++M G+ G    A +  E
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMYGKCGDSETATTVFE 223

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWK 578
           RMPV+  V  W A++   +  G  ++    AE LF + PD S   +  M   Y+ +G   
Sbjct: 224 RMPVR-SVSSWNAMVSLNTHLGRMDL----AESLFESMPDRSIVSWNAMIAGYNQNGLDA 278

Query: 579 ERAKAIKRM---KEMGVDKET---------GISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +  K   RM     M  D+ T          +  + I KQVH++++  +M   +   + +
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           ++   +     G V N R I+
Sbjct: 339 ISTYAK----SGSVENARRIM 355


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 329/562 (58%), Gaps = 6/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++   L+  Y KC +   A +LF  +  RD V+W+ +++  ++ G  +     F+  ++ 
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQE-MQN 423

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + ++ +   IL AC    L  + K IHC       + +++ G AL++ Y KCG  ++
Sbjct: 424 QKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTA 483

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F  M  R+++TW ++I+G  Q       + +F K+ L  INP++ T +  V AC+ 
Sbjct: 484 ALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACAL 543

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTV 328
           L  L +G  IHG++ KL  +SD  +++AL+DMY+KCGS+  A  +F   +   D V+  V
Sbjct: 544 LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNV 603

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIK 386
           I+  + QNG  +EA+  F +M        PN V+  +VL       +   G   H+ II+
Sbjct: 604 IIAAYMQNGHAKEAISSFHQMRLENFH--PNSVTFVSVLPAAAYLAAFREGMAFHACIIQ 661

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F SN  V N LI+MY+KCG L  S K+F+ M  +++VSWN+M++ +A HG+G +A+ L
Sbjct: 662 MGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIAL 721

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M+   V+   V+F+S+L AC H GLV +G +   SM++ + I P  EHYAC+VD++G
Sbjct: 722 FSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLG 781

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGL  E   FI+ MPV+PD  VW ALLG+C +H + ++G+ A + L   +P +PA +++
Sbjct: 782 RAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVV 841

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +++IY+ SGRW +  KA  +M ++G+ K  G SW+E++ +VH+F V DK HPQ +++H +
Sbjct: 842 LSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLL 901

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
              LL  M   GYVP++  +L 
Sbjct: 902 WNTLLEKMEKIGYVPDRSCVLQ 923



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 242/465 (52%), Gaps = 6/465 (1%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+    ++ + N L+  Y KC  +  A ++FD M  +D VSW TM++G+  NG F     
Sbjct: 256 VFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 142 FFKRSLELGFYQLDQAS-FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
            F + ++LG  ++++ S  +  L+A +  +L    K IH        + ++ V   L+  
Sbjct: 316 LFDK-MKLGNVRINKVSAVSAFLAAAETIDLE-KGKEIHGCALQQRIDSDILVATPLMVM 373

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCG +   +++F  ++ R+++ W+A+I+ LVQ    EE L LF +M    + PN +T 
Sbjct: 374 YAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S + AC+ L  L  G+ IH    K  + SDL   +AL+ MY+KCG    A   F     
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D V+   ++ G+AQ G    A+ +F K+  + I  D   +  V+    +   L  G  I
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           H LI+K  F S+  V N LI+MY+KCG L  +  +F++    ++ V+WN +IAA+ ++G+
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+  + +M+LE   P  VTF+S+L A +++    +GM F   + ++  +S      +
Sbjct: 614 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 673

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            ++DM  + G L  +      M  K D + W A+L   ++HG  +
Sbjct: 674 -LIDMYAKCGQLXYSEKLFNEMDHK-DTVSWNAMLSGYAVHGHGD 716



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 230/444 (51%), Gaps = 8/444 (1%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y K   ++ A ++FD MP RD V+WN M++G  ++ +      FF+    +G    
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             +   +    C  S + L  + IH  V+   +   V+  N LI  Y KCG     R+VF
Sbjct: 230 SVSLLNLFPGICKLSNIELC-RSIHGYVFRRDFSSAVS--NGLIDLYSKCGDVDVARRVF 286

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  ++ ++W  +++G   N  + E L+LF KM LG +  N ++ +S+ +A +    L 
Sbjct: 287 DQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLE 346

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G++IHG   +  + SD+ + + LM MY+KCG  E A Q+F   +  D V+ + I+    
Sbjct: 347 KGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           Q G+ EEA+ LF +M     ++ PN V+  ++L      + L LGK IH   +K+D  S+
Sbjct: 407 QTGYPEEALSLFQEMQNQ--KMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSD 464

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                 L++MY+KCG    ++  F+RM+ R+ V+WNS+I  +A+ G+ + A++++ +++L
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             + P   T + ++ AC+ +  +++G      + ++   S      A ++DM  + G L 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNA-LIDMYAKCGSLP 583

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
            A     +     D + W  ++ A
Sbjct: 584 SAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 262/517 (50%), Gaps = 33/517 (6%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP--SLHASFIKT-FEPFDNQNVYNVPNA 88
           P+ S+S     NY+   RLLS S K    HL P   +HA  I + F+   + ++ ++ N 
Sbjct: 22  PSLSSSTYT--NYLHYPRLLS-SCK----HLNPLLQIHAQIIVSGFK--HHHSITHLIN- 71

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
                 L S + KCD  R+   +FD  P    + WN+M+  + R+ +++     +   +E
Sbjct: 72  ------LYSLFHKCDLARS---VFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE 122

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            G  + D+ +FT +L AC    L+L   +  H  +   G E +V +G  L+  Y K G  
Sbjct: 123 KGL-EPDKYTFTFVLKAC-TGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDL 180

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF +M  R+V+ W A+I+GL Q++   E +  F  M L  + P+S++ L+     
Sbjct: 181 KRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGI 240

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L  +   R IHG +++    S   + + L+D+YSKCG V+ A ++F+   + D VS  
Sbjct: 241 CKLSNIELCRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWG 298

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLII 385
            ++ G+A NG   E ++LF KM    + I  N VSAV        ++ L  GK+IH   +
Sbjct: 299 TMMAGYAHNGCFVEVLELFDKMKLGNVRI--NKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +    S+  V   L+ MY+KCG+ E + ++F  +  R+ V+W+++IAA  + G   +AL 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L++EM+ + ++P  VT +S+L AC+ + L+  G + +   T    +         +V M 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLG-KSIHCFTVKADMDSDLSTGTALVSMY 475

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            + G    A +   RM  + D++ W +L+   +  GD
Sbjct: 476 AKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGD 511



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 15/141 (10%)

Query: 30  QDPTSSTSKLVLDNY----VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85
           ++  SS  ++ L+N+    V    +L  +A    F  G + HA  I+             
Sbjct: 615 KEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM----------GF 664

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
            + T++ NSL+  Y KC Q+  + KLF++M  +DTVSWN M+SG+  +G  D     F  
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 146 SLELGFYQLDQASFTIILSAC 166
             E    Q+D  SF  +LSAC
Sbjct: 725 MQE-SQVQIDSVSFVSVLSAC 744


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/608 (33%), Positives = 335/608 (55%), Gaps = 12/608 (1%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L +   ++ L+   A+    + G  LHA  I+            +PN T + N  L+ Y 
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRG---------GCLPN-TFLSNHFLNLYS 121

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC ++   +KLFD M  R+ VSW ++++GF  N  F      F + + +      Q + +
Sbjct: 122 KCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQ-MRIEGEIATQFALS 180

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +L AC           +HCLV  CG+  E+ VG+ L   Y KCG  S   K F EM  +
Sbjct: 181 SVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCK 240

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           + + WT++I G V+N  +++ L  ++KM    +  +     S++ ACS L+A   G+ +H
Sbjct: 241 DAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLH 300

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-LDGVSMTVILVGFAQNGFE 339
             + KL  + +  I +AL DMYSK G +  A  +F+   + +  VS+T I+ G+ +    
Sbjct: 301 ATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQI 360

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E+A+  FV + + GIE +    ++++        L  G Q+H  ++K +F  +PFV++ L
Sbjct: 361 EKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTL 420

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY KCG  + SI++F  +   + ++WN+++  F++HG G  A+E +  M   G++P  
Sbjct: 421 VDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNA 480

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VTF++LL  CSH G+V  G+ +  SM +++ + P+ EHY+CV+D++GRAG L EA  FI 
Sbjct: 481 VTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFIN 540

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP +P+V  W + LGAC IHGD E  K+AA+KL   +P++   ++L++NIY+   +W++
Sbjct: 541 NMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWED 600

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
                K +K+  ++K  G SW++I  + H F V+D  HPQ   I+  L  LL  +   GY
Sbjct: 601 VQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGY 660

Query: 640 VPNKRFIL 647
           VP    +L
Sbjct: 661 VPQTESVL 668



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/416 (28%), Positives = 200/416 (48%), Gaps = 8/416 (1%)

Query: 138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL 197
           + F F K     G    D  +   ++    R++     K +H ++   G      + N  
Sbjct: 57  ISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHF 116

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           +  Y KCG      K+F +M  RN+++WT++I+G   N  ++E L  F +M +       
Sbjct: 117 LNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQ 176

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
               S + AC+ L A+  G Q+H ++ K     +L + S L DMYSKCG + DA + FE 
Sbjct: 177 FALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEE 236

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
               D V  T ++ GF +NG  ++A+  ++KMV   + ID +++ + L       +   G
Sbjct: 237 MPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFG 296

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFAR 436
           K +H+ I+K  F    F+ N L +MYSK GD+  +  VF   +   S VS  ++I  +  
Sbjct: 297 KSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVE 356

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRA 495
                KAL  + +++  G+EP + TF SL+ AC++   +  G +    + + + +  P  
Sbjct: 357 MDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFV 416

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
              + +VDM G+ GL   +    + +   PD + W  L+G  S HG   +G+ A E
Sbjct: 417 S--STLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG---LGRNAIE 466


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/647 (33%), Positives = 352/647 (54%), Gaps = 69/647 (10%)

Query: 70  FIKTFEPFDNQNVYN-VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           + KT   +D   V++ +P  +V  WN +LS Y K  ++  A ++F++MP  D+VSW  M+
Sbjct: 58  YAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMI 117

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
            G+ + G+F+   G F R +        Q + T +L++C   E   + + +H  V   G 
Sbjct: 118 VGYNQMGQFENAIGMF-REMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGL 176

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---------------------------- 219
              ++V N+L+  Y K G   + + VF  M++                            
Sbjct: 177 SSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQ 236

Query: 220 ---RNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCE 275
              R+V++W A+ISG  Q+    E L +F KM +     P+  T  S++ AC+ L+ L  
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-----------FAEELDG- 323
           G+QIH  + +    +   + +AL+ MYSK G VE A +I E           F   LDG 
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGY 356

Query: 324 ---------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
                                V+ T ++VG+ QNGF ++AM+LF  M+K G + +   ++
Sbjct: 357 VKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLA 416

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-P 421
            +L V     SL  G+QIH+   +S   S+  V+N LI MY+K G + D+  VF+ +   
Sbjct: 417 TMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWK 476

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R++++W SMI A A+HG G +AL L+E M   G++P  +T++ +L AC+HVGLV +G  +
Sbjct: 477 RDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSY 536

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              M   H+I P   HYAC++D+ GRAGLL EA +FIE MP++PDV+ W +LL +C +H 
Sbjct: 537 YNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHK 596

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+ + AAE+L L +P++   Y  +AN+YS  G+W+  A   K MK+ GV K+ G SW+
Sbjct: 597 NVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWV 656

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +I+ +VH F VDD +HPQ D I+ ++A++ + +   G+VP+   +LH
Sbjct: 657 QIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLH 703



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 144/316 (45%), Gaps = 32/316 (10%)

Query: 26  TKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDN----- 79
           +K++ D +S   K  L      +  LS  A   +  LG  +HA  I+T F+ F       
Sbjct: 266 SKMLMDSSSKPDKFTL------ASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 80  -------------QNVYN---VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
                        Q +     + N  VI + +LL  Y+K   +  A ++FD + +RD V+
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVA 379

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  M+ G+++NG        F+  ++ G  + +  +   +LS           + IH   
Sbjct: 380 WTAMIVGYVQNGFNQDAMELFRSMIKEG-PKPNNYTLATMLSVSSSLASLDHGRQIHASA 438

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEG 241
              G    V+V NALIT Y K GS +  R VF  +   R+ ITWT++I  L Q+ L EE 
Sbjct: 439 TRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEA 498

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMD 300
           L LF +M    I P+ +TY+  + AC+ +  + +GR  + ++     +       + ++D
Sbjct: 499 LTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMID 558

Query: 301 MYSKCGSVEDAWQIFE 316
           ++ + G +++A    E
Sbjct: 559 LFGRAGLLQEAHAFIE 574



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 77/337 (22%)

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKC------------------------------ 305
           G+ IH  + K  L   + + + LM+ Y+K                               
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 306 -GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G +E+A ++FE   E D VS T ++VG+ Q G  E A+ +F +MV   +      ++ V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---- 420
           L        LG+G+++HS ++K   +S   V N L+NMY+K GD   +  VF RM     
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 421 ---------------------------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
                                       R+ VSWN+MI+ + +HG   +AL+++ +M ++
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 454 -GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVG 506
              +P   T  S L AC++       +E LK   ++H    R E          ++ M  
Sbjct: 272 SSSKPDKFTLASALSACAN-------LENLKLGKQIHAHIIRTEFDTFGAVGNALISMYS 324

Query: 507 RAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHGD 542
           ++G +  A+  IE+ M    DV+ + ALL      GD
Sbjct: 325 KSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD 361



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 100/259 (38%), Gaps = 62/259 (23%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKC------------------------------ 406
           GK IH+ IIK+      F+ N L+N Y+K                               
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 407 -GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G LE++ +VF  M   +SVSW +MI  + + G    A+ ++ EM  + V PT  T  ++
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L +C+ V  +  G + + S    H +S        +++M  ++G  + A+   +RM +K 
Sbjct: 152 LASCAAVECLGIGRK-VHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKS 210

Query: 526 ------------------------------DVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                                         DV+ W A++   + HG          K+ +
Sbjct: 211 TSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLM 270

Query: 556 AQPDSPAPYILMANIYSCS 574
                P  + L + + +C+
Sbjct: 271 DSSSKPDKFTLASALSACA 289


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/639 (33%), Positives = 329/639 (51%), Gaps = 74/639 (11%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P   +NV+        WNSLLS + K  ++ +A  +F +MP RD VSW  MV G  R G 
Sbjct: 92  PLARRNVFT-------WNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           F             GF    Q + T +LS+C  ++   V + +H  V   G    V V N
Sbjct: 145 FGEAIKTLLDMTADGFTPT-QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNV-------------------------------IT 224
           +++  Y KCG + +   VF  M VR+V                               ++
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W A+I+G  QN L  + LKLF +M H   + P+  T  S + AC+ L  +  G+Q+H  +
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIF--------------------------EF 317
            +  +  +  + +AL+  Y+K GSVE+A +I                           E 
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 318 AEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A E+       D V+ T ++VG+ QNG  +EA+ LF  M+  G E +   ++AVL V   
Sbjct: 384 AREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCAS 443

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNS 429
              L  GKQIH   I+S    +  V+N +I MY++ G    + ++F ++  R  +++W S
Sbjct: 444 LACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTS 503

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI A A+HG G +A+ L+EEM   GVEP  +T++ +L ACSH G VN+G  +   +   H
Sbjct: 504 MIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEH 563

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
           +I+P   HYAC+VD++ RAGL  EA+ FI RMPV+PD + W +LL AC +H ++E+ + A
Sbjct: 564 QIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELA 623

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEKL    P++   Y  +AN+YS  GRW + A+  K  KE  V KETG SW  I  ++H 
Sbjct: 624 AEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHV 683

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F  DD +HPQ D ++ + A +   +   G+VP+ + +LH
Sbjct: 684 FGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLH 722



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 165/365 (45%), Gaps = 32/365 (8%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQ------NVY----NVP 86
           S +  D +  I+ +LS  A  G+  +G  +HA  ++T   +++Q      + Y    +V 
Sbjct: 291 SSMAPDEFT-ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 349

Query: 87  NATVI-------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           NA  I             + +LL  Y+K   M +A ++F  M  RD V+W  M+ G+ +N
Sbjct: 350 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 409

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G  D     F+  +  G  + +  +   +LS C         K IHC       E   +V
Sbjct: 410 GRNDEAIDLFRSMITCG-PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSV 468

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
            NA+IT Y + GS    R++F ++  R   ITWT++I  L Q+   EE + LF +M    
Sbjct: 469 SNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAG 528

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           + P+ +TY+  + ACS    + EG++ +  I  +  +  ++   + ++D+ ++ G   +A
Sbjct: 529 VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEA 588

Query: 312 WQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
            + I     E D ++   +L     +   E A     K+    + IDPN   A   +  V
Sbjct: 589 QEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL----LSIDPNNSGAYSAIANV 644

Query: 371 DTSLG 375
            ++ G
Sbjct: 645 YSACG 649



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 31/321 (9%)

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG--KQIHSLIIKSDFTS-NPFVNNGLIN 401
           +  + VKAG+     + + +L  +G +T+ G G  +    L  +      N F  N L++
Sbjct: 48  IHARAVKAGLLASAYLCNNLLSYYG-ETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLS 106

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           M++K G L D+  VF+ M  R++VSW  M+    R G   +A++   +M  +G  PT  T
Sbjct: 107 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 166

Query: 462 FLSLLHAC--SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
             ++L +C  +  G V + +        +    P A     V++M G+ G    A +  E
Sbjct: 167 LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN---SVLNMYGKCGDAETASTVFE 223

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWK 578
           RMPV+  V  W A++   +  G  ++    AE LF + P  S   +  M   Y+ +G   
Sbjct: 224 RMPVR-SVSSWNAMVSLNTHLGRMDL----AESLFESMPGRSIVSWNAMIAGYNQNGLDA 278

Query: 579 ERAKAIKRM---KEMGVDKET---------GISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +  K   RM     M  D+ T          +  + I KQVH++++  +M   +   + +
Sbjct: 279 KALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNAL 338

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           ++   +     G V N R I+
Sbjct: 339 ISTYAK----SGSVENARRIM 355


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 312/556 (56%), Gaps = 1/556 (0%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            N+L++ Y +C  +  A  +F+    RD +SWN+M++G  ++G ++  +  F    + G  
Sbjct: 525  NALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGL- 583

Query: 153  QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            + D+ +F  +L  C   E   + + IH L+   G + +V +GNALI  Y +CGS     +
Sbjct: 584  EPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYE 643

Query: 213  VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            VF  +R RNV++WTA+I G        +  +LF +M      P   T+ S + AC     
Sbjct: 644  VFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSAC 703

Query: 273  LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            L EG+++   +     + D  + +AL+  YSK GS+ DA ++F+     D +S   ++ G
Sbjct: 704  LDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAG 763

Query: 333  FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +AQNG    A+Q   +M + G+ ++     ++L      ++L  GK++H+ I+K     +
Sbjct: 764  YAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGD 823

Query: 393  PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
              V   LI+MY+KCG LE++ +VF     +N V+WN+MI A+A+HG   KAL+ +  M  
Sbjct: 824  VRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDK 883

Query: 453  EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            EG++P   TF S+L AC+H GLV +G     S+   H +SP  EHY C+V ++GRAG   
Sbjct: 884  EGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQ 943

Query: 513  EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
            EA + I +MP  PD  VW+ LLGAC IHG+  + ++AA         +PA Y+L++N+Y+
Sbjct: 944  EAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYA 1003

Query: 573  CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             +GRW + AK  + M+  G+ KE G SWIE++  +H F+  D+ HP+   I+  L  L  
Sbjct: 1004 AAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSL 1063

Query: 633  LMIDEGYVPNKRFILH 648
             M   GY P+ +++LH
Sbjct: 1064 EMERAGYSPDTQYVLH 1079



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 248/451 (54%), Gaps = 3/451 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I NSL+S Y +C  +  A +LF+ MP RD +SWN +++G+ R  +       +K+    G
Sbjct: 422 IGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG 481

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +  + +F  +LSAC  S      KMIH  +   G +    + NAL+  Y +CGS    
Sbjct: 482 V-KPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEA 540

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF   R R++I+W ++I+G  Q+  YE   KLF++M    + P+ +T+ S ++ C   
Sbjct: 541 QNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNP 600

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +AL  GRQIH ++ +  LQ D+ + +AL++MY +CGS++DA+++F      + +S T ++
Sbjct: 601 EALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMI 660

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GFA  G + +A +LF +M   G +   +  S++L        L  GK++ + I+ S + 
Sbjct: 661 GGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE 720

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V N LI+ YSK G + D+ KVF +M  R+ +SWN MIA +A++G G  AL+   +M
Sbjct: 721 LDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQM 780

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + +GV     +F+S+L+ACS    + +G      + +  ++       A ++ M  + G 
Sbjct: 781 QEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVK-RKMQGDVRVGAALISMYAKCGS 839

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           L EA+   +    K +V+ W A++ A + HG
Sbjct: 840 LEEAQEVFDNFTEK-NVVTWNAMINAYAQHG 869



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 248/455 (54%), Gaps = 11/455 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L + +++C  +  A +  +    RD V +N +++   ++G ++  F  + +    G
Sbjct: 321 VGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDG 380

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +++ ++  +L+AC  S+     ++IH  +   G+  +V +GN+LI+ Y +CG     
Sbjct: 381 VV-MNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRA 439

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F  M  R++I+W A+I+G  + +   E +KL+ +M    + P  +T+L  + AC+  
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            A  +G+ IH  + +  ++S+  + +ALM+MY +CGS+ +A  +FE     D +S   ++
Sbjct: 500 SAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMI 559

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQ+G  E A +LF++M K G+E D    ++VL       +L LG+QIH LII+S   
Sbjct: 560 AGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  + N LINMY +CG L+D+ +VF  +  RN +SW +MI  FA  G   KA EL+ +M
Sbjct: 620 LDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQM 679

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVG 506
           + +G +P   TF S+L AC     +++G +     L S  E+      A     ++    
Sbjct: 680 QNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNA-----LISAYS 734

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           ++G + +AR   ++MP + D++ W  ++   + +G
Sbjct: 735 KSGSMTDARKVFDKMPNR-DIMSWNKMIAGYAQNG 768



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 143/463 (30%), Positives = 246/463 (53%), Gaps = 7/463 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+KC  + +A ++F  MP RD +SWN+++S + + G     F  F+     GF 
Sbjct: 121 NLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI 180

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                  +I+ + C  +EL    K IH  +   GY+ +  V N+L+  Y KC    S R+
Sbjct: 181 PSKITYISILTACCSPAELEY-GKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQ 239

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  R+V+++  ++    Q    EE + LF +M    I P+ +TY++ + A +    
Sbjct: 240 VFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSM 299

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L EG++IH +     L SD+ + +AL  M+ +CG V  A Q  E   + D V    ++  
Sbjct: 300 LDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAA 359

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G  EEA + + +M   G+ ++     +VL       +LG G+ IHS I +   +S+
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N LI+MY++CGDL  + ++F+ M  R+ +SWN++IA +AR  +  +A++LY++M+ 
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV+P  VTFL LL AC++    + G    + +     I         +++M  R G ++
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSIM 538

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           EA++  E    + D++ W +++   + HG  E    AA KLFL
Sbjct: 539 EAQNVFEGTRAR-DIISWNSMIAGHAQHGSYE----AAYKLFL 576



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 254/523 (48%), Gaps = 32/523 (6%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSLL+ Y KC+ + +A ++F  +  RD VS+NTM+  + +    +   G F +    G
Sbjct: 220 VQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEG 279

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ ++  +L A     +    K IH L    G   ++ VG AL T + +CG  +  
Sbjct: 280 I-PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGA 338

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           ++       R+V+ + A+I+ L Q+  YEE  + + +M    +  N  TYLS + ACS  
Sbjct: 339 KQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +AL  G  IH  + ++   SD+ I ++L+ MY++CG +  A ++F    + D +S   I+
Sbjct: 399 KALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAII 458

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+A+     EAM+L+ +M   G++        +L      ++   GK IH  I++S   
Sbjct: 459 AGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIK 518

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           SN  + N L+NMY +CG + ++  VF     R+ +SWNSMIA  A+HG+   A +L+ EM
Sbjct: 519 SNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEM 578

Query: 451 KLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           K EG+EP  +TF S+L  C            H+ ++  G++   ++              
Sbjct: 579 KKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNA----------- 627

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +++M  R G L +A      +  + +V+ W A++G  +  G+    + A E  +  Q D
Sbjct: 628 -LINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMIGGFADQGED---RKAFELFWQMQND 682

Query: 560 S--PAPYILMANIYSC--SGRWKERAKAIKRMKEMGVDKETGI 598
              P      + + +C  S    E  K I  +   G + +TG+
Sbjct: 683 GFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 192/384 (50%), Gaps = 2/384 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++A++  ++  C R      +K IH  +   G   ++ + N LI  Y KC S S   +
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  R+VI+W ++IS   Q    ++  +LF +M      P+ +TY+S + AC     
Sbjct: 139 VFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE 198

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G++IH  + +   Q D  ++++L++MY KC  +  A Q+F      D VS   +L  
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ  + EE + LF +M   GI  D      +L  F   + L  GK+IH L +     S+
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V   L  M+ +CGD+  + +     A R+ V +N++IAA A+HG+  +A E Y +M+ 
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS 378

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV     T+LS+L+ACS    +  G      ++EV   S   +    ++ M  R G L 
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGH-SSDVQIGNSLISMYARCGDLP 437

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
            AR     MP K D++ W A++  
Sbjct: 438 RARELFNTMP-KRDLISWNAIIAG 460



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 164/385 (42%), Gaps = 60/385 (15%)

Query: 89   TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            T + N+L+S Y K   M +A K+FD MP RD +SWN M++G+ +NG       F  +  E
Sbjct: 723  TGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQE 782

Query: 149  LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             G   L++ SF  IL+AC         K +H  +     + +V VG ALI+ Y KCGS  
Sbjct: 783  QGVV-LNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLE 841

Query: 209  SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              ++VF     +NV+TW A+I+   Q+ L  + L  F  M    I P+  T+ S + AC 
Sbjct: 842  EAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSAC- 900

Query: 269  GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
                                              +  G V +  +IF   E   G+S T+
Sbjct: 901  ----------------------------------NHSGLVMEGNRIFSSLESQHGLSPTI 926

Query: 329  ----ILVG-FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
                 LVG   + G  +EA  L  +M       D  +   +LG   +  ++ L +   + 
Sbjct: 927  EHYGCLVGLLGRAGRFQEAETLINQMP---FPPDAAVWETLLGACRIHGNVALAEHAANN 983

Query: 384  IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-----SVSW-------NSMI 431
             +K +   NP V   L N+Y+  G  +D  K+   M  R        SW       +  I
Sbjct: 984  ALKLN-ARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFI 1042

Query: 432  AAFARHGNGFKALELYEEMKLEGVE 456
            AA   H    +  E+YEE+K   +E
Sbjct: 1043 AADRSHP---ETAEIYEELKRLSLE 1064


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/632 (35%), Positives = 340/632 (53%), Gaps = 53/632 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           +RL+    K G+F           K F+    +N ++       +N++LS   K  ++  
Sbjct: 58  NRLVDAYGKCGYFEDAR-------KVFDRMPQRNTFS-------YNAVLSVLTKFGKLDE 103

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +F  MP  D  SWN MVSGF ++  F+    FF       F  L++ SF   LSAC 
Sbjct: 104 AFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV-LNEYSFGSALSACA 162

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                 +   IH L+    Y  +V +G+AL+  Y KCG  +  ++ F  M VRN+++W +
Sbjct: 163 GLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNS 222

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKL 286
           +I+   QN    + L++FV M    + P+ +T  S V AC+   A+ EG QIH  ++ + 
Sbjct: 223 LITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRD 282

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFE----------------FAE----------- 319
             ++DL + +AL+DMY+KC  V +A  +F+                +A            
Sbjct: 283 KYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMF 342

Query: 320 ----ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
               E + VS   ++ G+ QNG  EEA++LF+ + +  I         +L        L 
Sbjct: 343 SNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLK 402

Query: 376 LGKQIHSLIIKSDF------TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           LG+Q H+ I+K  F       S+ FV N LI+MY KCG +ED   VF RM  R+ VSWN+
Sbjct: 403 LGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNA 462

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI  +A++G G  ALE++ +M + G +P  VT + +L ACSH GLV +G  +  SM    
Sbjct: 463 MIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTEL 522

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            ++P  +H+ C+VD++GRAG L EA   I+ MP++PD +VW +LL AC +HG+ E+GKY 
Sbjct: 523 GLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYV 582

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEKL    P +  PY+L++N+Y+  GRWK+  +  K+M++ GV K+ G SWIEI+ +VH 
Sbjct: 583 AEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHV 642

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           F+V DK HP    IH VL  L   M   GYVP
Sbjct: 643 FMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVP 674



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 235/505 (46%), Gaps = 77/505 (15%)

Query: 141 GFFKRSL-ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
           GF ++ + EL F  LD + F  +L +C RS+  + ++ IH  +    +  E+ + N L+ 
Sbjct: 5   GFVQKLVGELCF--LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVD 62

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVI-------------------------------TWTAV 228
           +Y KCG     RKVF  M  RN                                 +W A+
Sbjct: 63  AYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAM 122

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +SG  Q+  +EE L+ FV MH      N  ++ S++ AC+GL  L  G QIH ++ K   
Sbjct: 123 VSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRY 182

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
             D+ + SAL+DMYSKCG V  A + F+     + VS   ++  + QNG   +A+++FV 
Sbjct: 183 LLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVM 242

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV-NNGLINMYSKCG 407
           M+  G+E D   +++V+      +++  G QIH+ ++K D   N  V  N L++MY+KC 
Sbjct: 243 MMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCR 302

Query: 408 DLEDSIKVFSRMAPR-------------------------------NSVSWNSMIAAFAR 436
            + ++  VF RM  R                               N VSWN++IA + +
Sbjct: 303 RVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQ 362

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G   +A+ L+  +K E + PT  TF +LL+AC+++  +  G +    + +        E
Sbjct: 363 NGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGE 422

Query: 497 HY-----ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                    ++DM  + G++ +     ERM V+ DV+ W A++   + +G    G  A E
Sbjct: 423 ESDIFVGNSLIDMYMKCGMVEDGCLVFERM-VERDVVSWNAMIVGYAQNG---YGTNALE 478

Query: 552 --KLFLAQPDSPAPYILMANIYSCS 574
             +  L     P    ++  + +CS
Sbjct: 479 IFRKMLVSGQKPDHVTMIGVLSACS 503



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 114/251 (45%), Gaps = 44/251 (17%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS------------ 424
            ++IH+ IIK+ F+S  F+ N L++ Y KCG  ED+ KVF RM  RN+            
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 425 -------------------VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
                               SWN+M++ FA+H    +AL  + +M  E     + +F S 
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+ +  +N G++ + ++    R        + +VDM  + G++  A+   + M V+ 
Sbjct: 158 LSACAGLTDLNMGIQ-IHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVR- 215

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANIYSCSGRWKE----- 579
           +++ W +L+     +G +  GK A E   +   +   P  I +A++ S    W       
Sbjct: 216 NIVSWNSLITCYEQNGPA--GK-ALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGL 272

Query: 580 --RAKAIKRMK 588
              A+ +KR K
Sbjct: 273 QIHARVVKRDK 283


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 327/567 (57%), Gaps = 21/567 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y K   +  A  +F+ MP  D VSWN  +SG + +G          R+LEL   
Sbjct: 244 NALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHD-------HRALEL-LL 295

Query: 153 QLDQAS-----FTI--ILSACDRSELSLVSKMIHCLVY--LCGYEEEVTVGNALITSYFK 203
           Q+  +      FT+  +L AC  +    + + IH  +   +  ++E V VG  L+  Y K
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVG--LVDMYAK 353

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GL-INPNSLTYL 261
            G     RKVF  M  R++I W A+ISG   +  + E L LF +M   GL ++ N  T  
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + + +  +A+C  RQ+H +  K+ L SD  + + L+D Y KCG ++ A ++F+ +   
Sbjct: 414 SVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSD 473

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D +S T ++   +Q    E+A++LFV+M++ G+E D  ++S++L      ++   GKQ+H
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVH 533

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + +IK  FTS+ F  N L+  Y+KCG +ED+   FS +  R  VSW++MI   A+HG+G 
Sbjct: 534 AHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGK 593

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL+L+  M  EGV P  +T  S+L AC+H GLV+   ++ +SM E   I    EHYAC+
Sbjct: 594 RALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACM 653

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           +D++GRAG L +A   +  MP + +  VW ALLGA  +H D E+G+ AAEKLF  +P+  
Sbjct: 654 IDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKS 713

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             ++L+AN Y+ +G W E AK  K MK+  V KE  +SW+EI+ +VH+F+V DK HP   
Sbjct: 714 GTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTR 773

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFILH 648
            I+G LAEL  LM   GYVPN    LH
Sbjct: 774 DIYGKLAELGDLMNKAGYVPNVEVDLH 800



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 257/515 (49%), Gaps = 17/515 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDM----PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           + N+L++ Y     +  A ++FD+       R+ VSWNTM+S +++N +     G F+  
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G  + ++  F+ +++AC  S      + +H  V   GYE++V   NAL+  Y K G 
Sbjct: 197 VWSG-ERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGD 255

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF +M   +V++W A ISG V +      L+L ++M    + PN  T  S + A
Sbjct: 256 IEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKA 315

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+G  A   GRQIHG + K     D  +   L+DMY+K G ++DA ++F+F    D +  
Sbjct: 316 CAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILW 375

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLI 384
             ++ G + +G   E + LF +M K G+++D N   +++VL       ++   +Q+H+L 
Sbjct: 376 NALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALA 435

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            K    S+  V NGLI+ Y KCG L+ +IKVF      + +S  +M+ A ++  +G  A+
Sbjct: 436 EKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAI 495

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+ +M  +G+EP      SLL+AC+ +    +G +    + +    S      A V   
Sbjct: 496 KLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVY-A 554

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP- 563
             + G + +A      +P +  ++ W A++G  + HG    GK A +       +  AP 
Sbjct: 555 YAKCGSIEDADMAFSGLPER-GIVSWSAMIGGLAQHGH---GKRALDLFHRMLDEGVAPN 610

Query: 564 YILMANIYSC---SGRWKERAKAIKRMKE-MGVDK 594
           +I + ++ S    +G   +  K  + MKE  G+D+
Sbjct: 611 HITLTSVLSACNHAGLVDDAKKYFESMKETFGIDR 645



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 155/593 (26%), Positives = 258/593 (43%), Gaps = 66/593 (11%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGF 151
           N LL+ Y +C     A  +FD++P    VSW+++V+ +  NG   D    F  R++    
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAF--RAMRGRG 98

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              ++ +  ++L              +H L        +V V NAL+  Y   G     R
Sbjct: 99  VPCNEFALPVVLKCAPDVRFG---AQVHALAVATRLVHDVFVANALVAVYGGFGMVDEAR 155

Query: 212 KVFGEM----RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           ++F E       RN ++W  +IS  V+N    + + +F +M      PN   +   V AC
Sbjct: 156 RMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNAC 215

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +G + L  GRQ+HG + +   + D+   +AL+DMYSK G +E A  +FE     D VS  
Sbjct: 216 TGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWN 275

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             + G   +G +  A++L ++M  +G+  +   +S+VL       +  LG+QIH  ++K+
Sbjct: 276 AFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKA 335

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               + FV  GL++MY+K G L+D+ KVF  M  R+ + WN++I+  +  G   + L L+
Sbjct: 336 VADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLF 395

Query: 448 EEMKLEG--VEPTDVTFLSLL------HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             M+ EG  ++    T  S+L       A  H   V+   E +  +++ H I+   + Y 
Sbjct: 396 HRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYW 455

Query: 500 CVVDMVGRAGLLIEARS-------------------------FIE--RMPVKPDVLVWQA 532
               +     +  E+RS                         F++  R  ++PD  V  +
Sbjct: 456 KCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSS 515

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           LL AC+     E GK     L   Q   D  A   L+     C G  ++   A   + E 
Sbjct: 516 LLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKC-GSIEDADMAFSGLPER 574

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA-ELLRLMIDEGYVPN 642
           G+     +SW  +            +   A   HG  A +L   M+DEG  PN
Sbjct: 575 GI-----VSWSAM------------IGGLAQHGHGKRALDLFHRMLDEGVAPN 610



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 195/406 (48%), Gaps = 17/406 (4%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S  ++ N   +S +L   A  G F+LG  +H   +K    FD            +   L+
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDE----------FVAVGLV 348

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLD 155
             Y K   + +A K+FD MP RD + WN ++SG   +G        F R  + G    ++
Sbjct: 349 DMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVN 408

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           + +   +L +   SE    ++ +H L    G   +  V N LI SY+KCG      KVF 
Sbjct: 409 RTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK 468

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           E R  ++I+ T +++ L Q    E+ +KLFV+M    + P+S    S + AC+ L A  +
Sbjct: 469 ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQ 528

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+Q+H  L K    SD+   +AL+  Y+KCGS+EDA   F    E   VS + ++ G AQ
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQ 588

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS---DFTSN 392
           +G  + A+ LF +M+  G+  +   +++VL        +   K+    + ++   D T  
Sbjct: 589 HGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEE 648

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
            +    +I++  + G LED++++ + M    N+  W +++ A   H
Sbjct: 649 HYAC--MIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVH 692



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 3/113 (2%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           P  + + L  FG   SL  G  +HS ++KS   +    +N L+ +YS+C     +  VF 
Sbjct: 4   PETIGSALARFGTSRSLFAGAHLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFD 61

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +     VSW+S++ A++ +G    AL  +  M+  GV P +   L ++  C+
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGV-PCNEFALPVVLKCA 113


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 319/564 (56%), Gaps = 3/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +    +I N LLS Y K +++R A ++F  M ++D+V+WNTM+ G+ + G  +     F 
Sbjct: 253 IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFM 312

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             ++ GF   D  S T  + AC +S    V K +H  +   G+E +    N LI  Y KC
Sbjct: 313 DMID-GFVP-DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G   + ++VF   + ++ +TW ++I+G  Q+  Y+EGL+ F  M +    P+S+T++  +
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLL 429

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              S L  + +GR IH  + K   +++L I ++L+D+Y+KCG ++D  ++F +    D +
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDII 489

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++             Q+  +M   G+  D   V  +L +  +      GK+IH  I
Sbjct: 490 SWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYI 549

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            KS F SN  + N LI MYSKCG LE+ IKVF  M  ++ V+W ++I+AF  +G G KAL
Sbjct: 550 FKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKAL 609

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           + +++M+L GV P  V F++ + ACSH G+V +G+ F   M   + + PR EHYACVVD+
Sbjct: 610 KAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDL 669

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + R+GLL +A  FI  MP+KPD  +W ALL AC   G++ + +  ++K+     D    Y
Sbjct: 670 LARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYY 729

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+  G+W +       MK  G+ KE G SWIEI+K+V+ F   DK   Q D + 
Sbjct: 730 VLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVK 789

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
            +L  L+RLM  EGYV + +F LH
Sbjct: 790 DLLEYLVRLMAKEGYVADLQFALH 813



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 150/508 (29%), Positives = 263/508 (51%), Gaps = 24/508 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L+  Y +   + NA  +F++M  RD+VSWN+++SG+  NG ++     + +    G
Sbjct: 158 IGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTG 217

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + + +L AC           +H ++   G   +V +GN L++ YFK       
Sbjct: 218 MVP-DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+VF +M V++ +TW  +I G  Q   +E  +KLF+ M  G + P+ L+  S++ AC   
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQS 335

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ +H  L     + D    + L+DMY+KCG +  A ++F+  +  D V+   ++
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSD 388
            G+ Q+G+ +E ++ F KM+K  +E  P+ V+ V  L +F     +  G+ IH  +IK  
Sbjct: 396 NGYTQSGYYKEGLESF-KMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F +   + N L+++Y+KCG+++D +KVFS M+  + +SWN++IA+     +     ++  
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDM 504
           EM+ EG+ P + T L +L  CS + +  +G E      KS  E +     A     +++M
Sbjct: 513 EMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNA-----LIEM 567

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPA 562
             + G L       + M  K DV+ W AL+ A  ++G+ +    A + + L+   PDS A
Sbjct: 568 YSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626

Query: 563 PYILMANIYSC--SGRWKERAKAIKRMK 588
               +A I++C  SG  KE  +   RMK
Sbjct: 627 ---FIAFIFACSHSGMVKEGLRFFDRMK 651



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 207/394 (52%), Gaps = 8/394 (2%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           + +    L+S Y +     ++V +F  + P  +   WN+++     NG F    G++   
Sbjct: 53  SVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM 112

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            E    Q D  +F  ++++C R     +  ++H      G+E ++ +GNALI  Y +   
Sbjct: 113 REKKL-QPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             + R VF EM  R+ ++W ++ISG   N  +E+ L ++ K  +  + P+  T  S ++A
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L A+ EG  +HG++ K+ +  D+ I + L+ MY K   + +A ++F      D V+ 
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTW 291

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
             ++ G+AQ G  E +++LF+ M+   +   P+M+S  + +   G    L +GK +H  +
Sbjct: 292 NTMICGYAQLGRHEASVKLFMDMIDGFV---PDMLSITSTIRACGQSGDLQVGKFVHKYL 348

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I S F  +    N LI+MY+KCGDL  + +VF     ++SV+WNS+I  + + G   + L
Sbjct: 349 IGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGL 408

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           E ++ MK+E  +P  VTF+ LL   S +  +N+G
Sbjct: 409 ESFKMMKMER-KPDSVTFVLLLSIFSQLADINQG 441



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 198/400 (49%), Gaps = 8/400 (2%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQ 234
           + +H L+   G    V     LI+ Y +     S   VF  +    NV  W ++I  L  
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N L+ + L  + +M    + P++ T+ S + +C+ +  L  G  +H    ++  +SDL I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +AL+DMYS+   +++A  +FE     D VS   ++ G+  NGF E+A+ ++ K    G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D   +S+VL   G   ++  G  +H +I K     +  + NGL++MY K   L ++ +
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VFS+MA ++SV+WN+MI  +A+ G    +++L+ +M ++G  P  ++  S + AC   G 
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGD 337

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           +  G    K +          +  AC  ++DM  + G L+ A+   +    K D + W +
Sbjct: 338 LQVGKFVHKYLIGS---GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNS 393

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           L+   +  G  + G  + + + + +      ++L+ +I+S
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 329/560 (58%), Gaps = 2/560 (0%)

Query: 90  VIWNSLLSFYLKCDQMRN-AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           VI  + L  Y+KC+ + + + +LF+ +P  +  S+N ++ G+ R+ +     G F R L+
Sbjct: 247 VIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMF-RLLQ 305

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                LD+ S +    AC   +  L    +H L      +  + V NA++  Y KCG+  
Sbjct: 306 KSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALV 365

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               VF EM  R+ ++W A+I+   QN   E+ L LFV M    + P+  TY S + AC+
Sbjct: 366 EACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA 425

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G QAL  G +IH  + K  +  D  +  AL+DMYSKCG +E A ++ +   E   VS   
Sbjct: 426 GWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 485

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ GF+     EEA + F KM++ G++ D    + +L       ++ LGKQIH+ IIK +
Sbjct: 486 IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKE 545

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S+ ++++ L++MYSKCG+++D   +F +   R+ V+WN+M+  +A+HG G +AL+++E
Sbjct: 546 LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFE 605

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+LE V+P   TFL++L AC H+GLV KG+ +  SM   + + P+ EHY+CVVD++GR+
Sbjct: 606 YMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRS 665

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G + +A   IE MP + D ++W+ LL  C IHG+ E+ + AA  +   +P+  A Y+L++
Sbjct: 666 GQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLS 725

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G W E  K  K M+  G+ KE G SWIEI+ +VH+F+V DK HP++  I+  L 
Sbjct: 726 NIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLD 785

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   M   GY+P+  FIL+
Sbjct: 786 VLTDEMKWVGYMPDTDFILN 805



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/607 (26%), Positives = 269/607 (44%), Gaps = 92/607 (15%)

Query: 7   FLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSL 66
           F    S  PF +  +SPF +         T   +     D   L            G   
Sbjct: 15  FFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCP----------GKQA 64

Query: 67  HASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           HA  I T F+P              + N L+  Y+KC  +  A K+FD MP RDTVSWN 
Sbjct: 65  HARMILTEFKP-----------TVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNA 113

Query: 126 MVSGFLRNGE-------FDMGFGFFKRSLELGFYQL-------DQASFTIILSACDRSEL 171
           M+ G+   G+       FD   G     +EL  +++       D+ +F ++L +C   E 
Sbjct: 114 MLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLED 173

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS----SGRKVFGEMRV-------- 219
                 IH L    G++ +V  G+AL+  Y KC   +     G ++F EM+         
Sbjct: 174 HGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQL 233

Query: 220 ------------------------------------------RNVITWTAVISGLVQNQL 237
                                                      N+ ++ A+I G  ++  
Sbjct: 234 HGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDK 293

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E L +F  +    +  + ++   +  AC+ ++   EG Q+HG+  K   QS++C+ +A
Sbjct: 294 GIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANA 353

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++DMY KCG++ +A  +FE     D VS   I+    QNG EE+ + LFV M+++G+E D
Sbjct: 354 ILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPD 413

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                +VL       +L  G +IH+ IIKS    + FV   LI+MYSKCG +E + K+  
Sbjct: 414 EFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHD 473

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           R+A +  VSWN++I+ F+      +A + + +M   GV+P + T+ ++L  C+++  V  
Sbjct: 474 RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 533

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G +    + +   +   A   + +VDM  + G + + +   E+ P + D + W A++   
Sbjct: 534 GKQIHAQIIK-KELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNR-DFVTWNAMVCGY 591

Query: 538 SIHGDSE 544
           + HG  E
Sbjct: 592 AQHGLGE 598


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/587 (35%), Positives = 332/587 (56%), Gaps = 19/587 (3%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F LG  LH   +K+   +D          ++I  + L  Y KCD+M +A K+F+ +P   
Sbjct: 255 FKLGTQLHGHALKSDFAYD----------SIIGTATLDMYAKCDRMSDAWKVFNTLPNPP 304

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S+N ++ G+ R  +       F+ SL+  +   D+ S +  L+AC   +  L    +H
Sbjct: 305 RQSYNAIIVGYARQDQGLKALEIFQ-SLQRTYLSFDEISLSGALTACSVIKGHLEGIQLH 363

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L   CG    + V N ++  Y KCG+      +F +M  R+ ++W A+I+   QN+   
Sbjct: 364 GLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIV 423

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L LFV M    + P+  TY S V AC+G QAL  G +IHG + K  +  D  + SAL+
Sbjct: 424 KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALV 483

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG + +A +I +  EE   VS   I+ GF+     E A + F +M++ G+  D  
Sbjct: 484 DMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNF 543

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL V     ++ LGKQIH+ I+K +  S+ ++ + L++MYSKCG+++DS  +F + 
Sbjct: 544 TYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKT 603

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+W++MI A+A HG+G +A++L+EEM+L  V+P    F+S+L AC+H+G V+KG+
Sbjct: 604 PKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGL 663

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            + + M   + + P  EHY+C+VD++GR+  + EA   IE M  + D ++W+ LL  C +
Sbjct: 664 HYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKM 723

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            G+ E+ + A   L    P   + Y+L+AN+Y+  G W E AK    MK   + KE G S
Sbjct: 724 QGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCS 783

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE----GYVPN 642
           WIE+  +VH+F+V DK HP+++ I+    E   L++DE    GYVP+
Sbjct: 784 WIEVRDEVHTFLVGDKAHPRSEEIY----EQTHLLVDEMKWAGYVPD 826



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 73  TFEPFDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
            F+ FD      +P+  VI WN+++  Y +   M  A  LFD MP RD VSWN+++S +L
Sbjct: 60  AFKVFDR-----MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYL 114

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
            NG        F R   L     D A+F+++L AC   E   +   +HCL    G+E +V
Sbjct: 115 HNGVNRKSIEIFVRMRSLKIPH-DYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDV 173

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
             G+AL+  Y KC       ++F EM  RN++ W+AVI+G VQN  + EGLKLF  M   
Sbjct: 174 VTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKV 233

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +  +  TY S   +C+GL A   G Q+HG   K     D  I +A +DMY+KC  + DA
Sbjct: 234 GMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA 293

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           W++F         S   I+VG+A+     +A+++F  + +  +  D   +S  L    V 
Sbjct: 294 WKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVI 353

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
                G Q+H L +K     N  V N +++MY KCG L ++  +F  M  R++VSWN++I
Sbjct: 354 KGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAII 413

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTE 487
           AA  ++    K L L+  M    +EP D T+ S++ AC+    +N GME     +KS   
Sbjct: 414 AAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMG 473

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +      A     +VDM G+ G+L+EA    +R+  K  V  W +++   S    SE
Sbjct: 474 LDWFVGSA-----LVDMYGKCGMLMEAEKIHDRLEEKTTV-SWNSIISGFSSQKQSE 524



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 248/490 (50%), Gaps = 8/490 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  V  ++L+  Y KC ++  A ++F +MP R+ V W+ +++G+++N  F  G   FK  
Sbjct: 171 NDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDM 230

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           L++G   + Q+++  +  +C       +   +H       +  +  +G A +  Y KC  
Sbjct: 231 LKVGM-GVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDR 289

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S   KVF  +      ++ A+I G  +     + L++F  +    ++ + ++   ++ A
Sbjct: 290 MSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTA 349

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS ++   EG Q+HG+  K  L  ++C+ + ++DMY KCG++ +A  IF+  E  D VS 
Sbjct: 350 CSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSW 409

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+    QN    + + LFV M+++ +E D     +V+       +L  G +IH  I+K
Sbjct: 410 NAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVK 469

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S    + FV + L++MY KCG L ++ K+  R+  + +VSWNS+I+ F+       A   
Sbjct: 470 SGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRY 529

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDM 504
           + +M   GV P + T+ ++L  C+++  +  G +      ++ +++  ++ Y  + +VDM
Sbjct: 530 FSQMLEMGVIPDNFTYATVLDVCANMATIELGKQI---HAQILKLNLHSDVYIASTLVDM 586

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
             + G + ++R   E+ P K D + W A++ A + HG  E      E++ L     P   
Sbjct: 587 YSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNV-KPNHT 644

Query: 565 ILMANIYSCS 574
           I ++ + +C+
Sbjct: 645 IFISVLRACA 654



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 195/410 (47%), Gaps = 33/410 (8%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F+ IL  C   +     K  H  + +  +   + V N L+  Y K  + +   KVF  M
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 218 RVRNVITWTAVISGLVQ-------------------------------NQLYEEGLKLFV 246
             R+VI+W  +I G  +                               N +  + +++FV
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M    I  +  T+   + ACSG++    G Q+H +  ++  ++D+   SAL+DMYSKC 
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK 187

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            ++ A++IF    E + V  + ++ G+ QN    E ++LF  M+K G+ +  +  ++V  
Sbjct: 188 KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFR 247

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                ++  LG Q+H   +KSDF  +  +    ++MY+KC  + D+ KVF+ +      S
Sbjct: 248 SCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQS 307

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           +N++I  +AR   G KALE+++ ++   +   +++    L ACS +    +G++ L  + 
Sbjct: 308 YNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ-LHGLA 366

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
               +         ++DM G+ G L+EA +  + M  + D + W A++ A
Sbjct: 367 VKCGLGFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAA 415



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 137/311 (44%), Gaps = 45/311 (14%)

Query: 253 INPNS-LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           +NP    T+   +  CS L+AL  G+Q H  +   +    + + + L+  Y K  ++  A
Sbjct: 1   MNPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYA 60

Query: 312 WQIFEFAEELDGVSMTVILVGFAQ-------------------------------NGFEE 340
           +++F+     D +S   ++ G+A+                               NG   
Sbjct: 61  FKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNR 120

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +++++FV+M    I  D    S VL         GLG Q+H L I+  F ++    + L+
Sbjct: 121 KSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALV 180

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYSKC  L+ + ++F  M  RN V W+++IA + ++    + L+L+++M   G+  +  
Sbjct: 181 DMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEA 514
           T+ S+  +C+       G+   K  T++H  + +++           +DM  +   + +A
Sbjct: 241 TYASVFRSCA-------GLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDA 293

Query: 515 RSFIERMPVKP 525
                 +P  P
Sbjct: 294 WKVFNTLPNPP 304


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/628 (36%), Positives = 351/628 (55%), Gaps = 38/628 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEP----FDNQNV----------------YNVPNAT 89
           LL     E     G SLH+ +IK+F P    F N  +                 ++ +  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 90  VI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V  +N++++ Y K  +   A +LFD +P  D VS+NT++S +   GE     G F    E
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 149 LGFYQLDQASFT---IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +G   LD   FT   +I + CD  ++ L+ ++ H +    G++  V+V NAL+T Y K G
Sbjct: 134 MG---LDMDGFTLSAVITACCD--DVGLIGQL-HSVAVSSGFDSYVSVNNALLTYYGKNG 187

Query: 206 SSSSGRKVF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                ++VF G   +R+ ++W ++I    Q+Q   + L LF +M    +N +  T  S +
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDG 323
            A + L+ L  G Q HG L K     +  + S L+D+YSKCG  + D  ++FE   E D 
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 324 VSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQI 380
           V    ++ G++QN  F E+A++ F +M   GI   PN  S V  +      +S   GKQI
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 381 HSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           HSL +KSD  SN   V+N LI MYSKCG+L+D+ ++F RMA  N+VS NSMIA +A+HG 
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             ++L L++ M    + PT +TF+S+L AC+H G V +G  +   M E   I P AEHY+
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C++D++GRAG L EA + I RMP  P  + W +LLGAC  HG+ E+   AA ++   +P 
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           + APY++++N+Y+ +GRW+E A   K M++ GV K+ G SWIE++K++H FV +D  HP 
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPM 605

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
              I+  L E+   M   GYVP+ R+ L
Sbjct: 606 IKEIYEFLEEMSGKMKRAGYVPDVRWAL 633



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 218/481 (45%), Gaps = 53/481 (11%)

Query: 154 LDQASFTI-----ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           ++Q S+T+     +L  C         K +H L             N  I  Y KCG  +
Sbjct: 1   MNQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLA 60

Query: 209 SGRKVFGEMRVRNVITWTAVISG-------LVQNQLYEE--------------------- 240
             RK F ++   NV ++ A+I+        L+ +QL+++                     
Sbjct: 61  WARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGE 120

Query: 241 ---GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
               L LF  M    ++ +  T  + + AC     L    Q+H +       S + + +A
Sbjct: 121 TAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNA 178

Query: 298 LMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           L+  Y K G ++DA ++F     + D VS   ++V + Q+    +A+ LF +MV+ G+ +
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKV 415
           D   +++VL  F     L  G Q H  +IK+ F  N  V +GLI++YSKC G + D  KV
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           F  +   + V WN+M++ ++++    + ALE + +M+  G  P D +F+ ++ ACS++  
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 475 VNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            ++G +     LKS    +RIS        ++ M  + G L +AR   +RM  + + +  
Sbjct: 359 PSQGKQIHSLALKSDIPSNRISVD----NALIAMYSKCGNLQDARRLFDRM-AEHNTVSL 413

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKERAKAIKRMK 588
            +++   + HG  EM      +  L +  +P     ++ + +C  +GR +E       MK
Sbjct: 414 NSMIAGYAQHG-IEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMK 472

Query: 589 E 589
           E
Sbjct: 473 E 473


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/628 (36%), Positives = 351/628 (55%), Gaps = 38/628 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEP----FDNQNV----------------YNVPNAT 89
           LL     E     G SLH+ +IK+F P    F N  +                 ++ +  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 90  VI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V  +N++++ Y K  +   A +LFD +P  D VS+NT++S +   GE     G F    E
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 149 LGFYQLDQASFT---IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +G   LD   FT   +I + CD  ++ L+ ++ H +    G++  V+V NAL+T Y K G
Sbjct: 134 MG---LDMDXFTLSAVITACCD--DVGLIGQL-HSVAVSSGFDSYVSVNNALLTYYGKNG 187

Query: 206 SSSSGRKVF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                ++VF G   +R+ ++W ++I    Q+Q   + L LF +M    +N +  T  S +
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDG 323
            A + L+ L  G Q HG L K     +  + S L+D+YSKCG  + D  ++FE   E D 
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 324 VSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQI 380
           V    ++ G++QN  F E+A++ F +M   GI   PN  S V  +      +S   GKQI
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 381 HSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           HSL +KSD  SN   V+N LI MYSKCG+L+D+ ++F RMA  N+VS NSMIA +A+HG 
Sbjct: 366 HSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGI 425

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             ++L L++ M    + PT +TF+S+L AC+H G V +G  +   M E   I P AEHY+
Sbjct: 426 EMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYS 485

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C++D++GRAG L EA + I RMP  P  + W +LLGAC  HG+ E+   AA ++   +P 
Sbjct: 486 CMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPS 545

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           + APY++++N+Y+ +GRW+E A   K M++ GV K+ G SWIE++K++H FV +D  HP 
Sbjct: 546 NAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPM 605

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
              I+  L E+   M   GYVP+ R+ L
Sbjct: 606 IKEIYEFLEEMSGKMKRAGYVPDVRWAL 633



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 218/481 (45%), Gaps = 53/481 (11%)

Query: 154 LDQASFTI-----ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           ++Q S+T+     +L  C         K +H L             N  I  Y KCG  +
Sbjct: 1   MNQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLA 60

Query: 209 SGRKVFGEMRVRNVITWTAVISG-------LVQNQLYEE--------------------- 240
             RK F ++   NV ++ A+I+        L+ +QL+++                     
Sbjct: 61  WARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGE 120

Query: 241 ---GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
               L LF  M    ++ +  T  + + AC     L    Q+H +       S + + +A
Sbjct: 121 TAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNA 178

Query: 298 LMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           L+  Y K G ++DA ++F     + D VS   ++V + Q+    +A+ LF +MV+ G+ +
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKV 415
           D   +++VL  F     L  G Q H  +IK+ F  N  V +GLI++YSKC G + D  KV
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           F  +   + V WN+M++ ++++    + ALE + +M+  G  P D +F+ ++ ACS++  
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 475 VNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            ++G +     LKS    +RIS        ++ M  + G L +AR   +RM  + + +  
Sbjct: 359 PSQGKQIHSLALKSDIPSNRISVD----NALIAMYSKCGNLQDARRLFDRM-AEHNTVSL 413

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKERAKAIKRMK 588
            +++   + HG  EM      +  L +  +P     ++ + +C  +GR +E       MK
Sbjct: 414 NSMIAGYAQHG-IEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMK 472

Query: 589 E 589
           E
Sbjct: 473 E 473


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 334/559 (59%), Gaps = 3/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y +  +M  A  +F +M   DT+SWN+M+SGF++NG +     F+    + G
Sbjct: 319 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 378

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   I++A  RS  +L    IH      G + ++ VGN+L+  Y K  S    
Sbjct: 379 -QKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 437

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F +M  ++V++WT +I+G  QN  +   L+LF ++ L  I+ + +   S ++ACSGL
Sbjct: 438 DCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 497

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + +   ++IH  + +  L SDL +++ ++D+Y +CG+V+ A ++FE  E  D VS T ++
Sbjct: 498 KLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMI 556

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             +  NG   EA++LF  M + G+E D   + ++L      ++L  GK+IH  +I+  F 
Sbjct: 557 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 616

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               + + L++MY++CG LE S  VF+ +  ++ V W SMI A+  HG G  A++L+  M
Sbjct: 617 LEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRM 676

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + E + P  + F+++L+ACSH GL+N+G  FL+SM   +++ P  EHYAC+VD++GRA  
Sbjct: 677 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANH 736

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  F++ M V+P   VW ALLGAC IH + E+G+ AA+KL    P++P  Y+L++N+
Sbjct: 737 LEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNV 796

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           YS   RWK+      RMK  G+ K  G SWIE+  +VH+F+  DK HPQ+  I+  L+++
Sbjct: 797 YSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQI 856

Query: 631 LRLMIDE-GYVPNKRFILH 648
              +  E GYV   +F+LH
Sbjct: 857 TEKLAKEGGYVAQTKFVLH 875



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 254/514 (49%), Gaps = 27/514 (5%)

Query: 33  TSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIW 92
             S S+  LD     S +L +   +     G  +HA  I +   F         N+  + 
Sbjct: 69  NQSPSQFSLDE--AYSSVLELCGSKKALSEGQQVHAHMITSNALF---------NSVFLS 117

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
             L+  Y KC  + +A KLFD MP +   +WN M+  ++ NGE  +G     R + +   
Sbjct: 118 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGE-PLGSLELYREMRVSGI 176

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            LD  +F  IL AC   +       +H L    GY   V V N+++  Y KC   +  R+
Sbjct: 177 PLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 236

Query: 213 VFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +F  M  + +V++W ++IS    N    E L+LF +M    + PN+ T+++++ AC    
Sbjct: 237 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSS 296

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            + +G  IH  + K +   ++ + +AL+ MY++ G + +A  IF   ++ D +S   +L 
Sbjct: 297 FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLS 356

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           GF QNG   EA+Q + +M  AG + D   V +++       +   G QIH+  +K+   S
Sbjct: 357 GFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDS 416

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  V N L++MY+K   ++    +F +M  ++ VSW ++IA  A++G+  +ALEL+ E++
Sbjct: 417 DLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ 476

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVG 506
           LEG++   +   S+L ACS       G++ + S+ E+H    R      V     VD+ G
Sbjct: 477 LEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG 529

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             G +  A    E +  K DV+ W +++ +C +H
Sbjct: 530 ECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVH 561



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 26/253 (10%)

Query: 335 QNGFEEEAMQ----LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + G   EA Q    LF     +   +D    S+VL + G   +L  G+Q+H+ +I S+  
Sbjct: 52  KRGSVNEAFQSLTDLFANQSPSQFSLD-EAYSSVLELCGSKKALSEGQQVHAHMITSNAL 110

Query: 391 SNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            N  F++  L+ MY KCG L D+ K+F  M  +   +WN+MI A+  +G    +LELY E
Sbjct: 111 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 170

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VD 503
           M++ G+     TF  +L AC   GL+       +   EVH ++ +  + + V      V 
Sbjct: 171 MRVSGIPLDACTFPCILKAC---GLLKD----RRYGAEVHGLAIKEGYVSIVFVANSIVG 223

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPA 562
           M  +   L  AR   +RMP K DV+ W +++ A S +G S      A +LF   Q  S A
Sbjct: 224 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQS----IEALRLFGEMQKASLA 279

Query: 563 P--YILMANIYSC 573
           P  Y  +A + +C
Sbjct: 280 PNTYTFVAALQAC 292



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 129/270 (47%), Gaps = 5/270 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N ++  Y +C  +  A ++F+ +  +D VSW +M+S ++ NG  +     F    E 
Sbjct: 519 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 578

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  S   ILSA          K IH  +   G+  E ++ + L+  Y +CG+   
Sbjct: 579 GV-EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 637

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF  +R ++++ WT++I+    +      + LF +M    I P+ + +++ + ACS 
Sbjct: 638 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 697

Query: 270 LQALCEGRQ-IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              + EGR+ +  + ++  L+      + L+D+  +   +E+A+Q  +  E      +  
Sbjct: 698 SGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 757

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
            L+G  Q    +E  ++  + +   +E+DP
Sbjct: 758 ALLGACQIHSNKELGEIAAQKL---LEMDP 784


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 319/564 (56%), Gaps = 3/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +    +I N LLS Y K +++R A ++F  M ++D+V+WNTM+ G+ + G  +     F 
Sbjct: 253 IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFM 312

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             ++ GF   D  S T  + AC +S    V K +H  +   G+E +    N LI  Y KC
Sbjct: 313 DMID-GFVP-DMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKC 370

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G   + ++VF   + ++ +TW ++I+G  Q+  Y+EGL+ F  M +    P+S+T++  +
Sbjct: 371 GDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLL 429

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              S L  + +GR IH  + K   +++L I ++L+D+Y+KCG ++D  ++F +    D +
Sbjct: 430 SIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDII 489

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++             Q+  +M   G+  D   V  +L +  +      GK+IH  I
Sbjct: 490 SWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYI 549

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            KS F SN  + N LI MYSKCG LE+ IKVF  M  ++ V+W ++I+AF  +G G KAL
Sbjct: 550 FKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKAL 609

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           + +++M+L GV P  V F++ + ACSH G+V +G+ F   M   + + PR EHYACVVD+
Sbjct: 610 KAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDL 669

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + R+GLL +A  FI  MP+KPD  +W ALL AC   G++ + +  ++K+     D    Y
Sbjct: 670 LARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYY 729

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+  G+W +       MK  G+ KE G SWIEI+K+V+ F   DK   Q D + 
Sbjct: 730 VLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVK 789

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
            +L  L+RLM  EGYV + +F LH
Sbjct: 790 DLLEYLVRLMAKEGYVADLQFALH 813



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 150/508 (29%), Positives = 263/508 (51%), Gaps = 24/508 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L+  Y +   + NA  +F++M  RD+VSWN+++SG+  NG ++     + +    G
Sbjct: 158 IGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTG 217

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + + +L AC           +H ++   G   +V +GN L++ YFK       
Sbjct: 218 MVP-DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREA 276

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+VF +M V++ +TW  +I G  Q   +E  +KLF+ M  G + P+ L+  S++ AC   
Sbjct: 277 RRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQS 335

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ +H  L     + D    + L+DMY+KCG +  A ++F+  +  D V+   ++
Sbjct: 336 GDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLI 395

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSD 388
            G+ Q+G+ +E ++ F KM+K  +E  P+ V+ V  L +F     +  G+ IH  +IK  
Sbjct: 396 NGYTQSGYYKEGLESF-KMMK--MERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG 452

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F +   + N L+++Y+KCG+++D +KVFS M+  + +SWN++IA+     +     ++  
Sbjct: 453 FEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMIN 512

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDM 504
           EM+ EG+ P + T L +L  CS + +  +G E      KS  E +     A     +++M
Sbjct: 513 EMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNA-----LIEM 567

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPA 562
             + G L       + M  K DV+ W AL+ A  ++G+ +    A + + L+   PDS A
Sbjct: 568 YSKCGSLENCIKVFKYMKEK-DVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVA 626

Query: 563 PYILMANIYSC--SGRWKERAKAIKRMK 588
               +A I++C  SG  KE  +   RMK
Sbjct: 627 ---FIAFIFACSHSGMVKEGLRFFDRMK 651



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 207/394 (52%), Gaps = 8/394 (2%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           + +    L+S Y +     ++V +F  + P  +   WN+++     NG F    G++   
Sbjct: 53  SVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM 112

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            E    Q D  +F  ++++C R     +  ++H      G+E ++ +GNALI  Y +   
Sbjct: 113 REKKL-QPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             + R VF EM  R+ ++W ++ISG   N  +E+ L ++ K  +  + P+  T  S ++A
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L A+ EG  +HG++ K+ +  D+ I + L+ MY K   + +A ++F      D V+ 
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTW 291

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
             ++ G+AQ G  E +++LF+ M+   +   P+M+S  + +   G    L +GK +H  +
Sbjct: 292 NTMICGYAQLGRHEASVKLFMDMIDGFV---PDMLSITSTIRACGQSGDLQVGKFVHKYL 348

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I S F  +    N LI+MY+KCGDL  + +VF     ++SV+WNS+I  + + G   + L
Sbjct: 349 IGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGL 408

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           E ++ MK+E  +P  VTF+ LL   S +  +N+G
Sbjct: 409 ESFKMMKMER-KPDSVTFVLLLSIFSQLADINQG 441



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 198/400 (49%), Gaps = 8/400 (2%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQ 234
           + +H L+   G    V     LI+ Y +     S   VF  +    NV  W ++I  L  
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N L+ + L  + +M    + P++ T+ S + +C+ +  L  G  +H    ++  +SDL I
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYI 158

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +AL+DMYS+   +++A  +FE     D VS   ++ G+  NGF E+A+ ++ K    G+
Sbjct: 159 GNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGM 218

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D   +S+VL   G   ++  G  +H +I K     +  + NGL++MY K   L ++ +
Sbjct: 219 VPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARR 278

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VFS+MA ++SV+WN+MI  +A+ G    +++L+ +M ++G  P  ++  S + AC   G 
Sbjct: 279 VFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGD 337

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           +  G    K +          +  AC  ++DM  + G L+ A+   +    K D + W +
Sbjct: 338 LQVGKFVHKYLIGS---GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNS 393

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           L+   +  G  + G  + + + + +      ++L+ +I+S
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 332/603 (55%), Gaps = 17/603 (2%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D+  LL+ +AK         +H+  + T       N+          N+LL  Y KC  +
Sbjct: 99  DLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANI----------NTLLLLYAKCGSI 148

Query: 106 RNAVKLFDDMPMRDT--VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
            + + LF+  P   T  V+W T+++   R+ +      FF R    G Y  +  +F+ IL
Sbjct: 149 HHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYP-NHFTFSAIL 207

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC  + L    + IH L++   +  +  V  AL+  Y KCGS      VF EM  RN++
Sbjct: 208 PACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLV 267

Query: 224 TWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +W ++I G V+N+LY   + +F + + LG   P+ ++  S + AC+GL  L  G+Q+HG 
Sbjct: 268 SWNSMIVGFVKNKLYGRAIGVFREVLSLG---PDQVSISSVLSACAGLVELDFGKQVHGS 324

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  L   + ++++L+DMY KCG  EDA ++F    + D V+  V+++G  +    E+A
Sbjct: 325 IVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQA 384

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
              F  M++ G+E D    S++        +L  G  IHS ++K+    N  +++ L+ M
Sbjct: 385 CTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTM 444

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG + D+ +VF      N V W +MI  F +HG   +A++L+EEM  EGV P  +TF
Sbjct: 445 YGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITF 504

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +S+L ACSH G ++ G ++  SM  VH I P  EHYAC+VD++GR G L EA  FIE MP
Sbjct: 505 VSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMP 564

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            +PD LVW ALLGAC  H + EMG+  AE+LF  +PD+P  Y+L++NIY   G  +E  +
Sbjct: 565 FEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADE 624

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             + M   GV KE+G SWI+++ +   F  +D+ H +   I+G+L +L  L+   GYV  
Sbjct: 625 VRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAE 684

Query: 643 KRF 645
            +F
Sbjct: 685 TQF 687


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/639 (34%), Positives = 331/639 (51%), Gaps = 74/639 (11%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P   +NV+        WNSLLS Y K  ++ +A  +F +MP RD VSW  MV G  R G 
Sbjct: 90  PAAQRNVFT-------WNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGR 142

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           F      F   +  G     Q + T +LS+C  +E   V + +H  V   G    V V N
Sbjct: 143 FGEAIKMFLDMVTDGLSPT-QFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN 201

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNV-------------------------------IT 224
           +++  Y KCG + + R VF  M  R+V                               ++
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVS 261

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W AVI+G  QN L  + L  F +M     + P+  T  S + AC+ L  +  G+Q+H  +
Sbjct: 262 WNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAW------------------------------- 312
            +  +     + +AL+ MY+K GSVE+A                                
Sbjct: 322 LRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH 381

Query: 313 --QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
             ++F+     D V+ T ++VG+ QNG  +EAM+LF  M+++G E +   V+AVL V   
Sbjct: 382 AREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCAS 441

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNS 429
              L  GKQIH   I+S    +  V+N ++ MY++ G L  + +VF R+  R  +V+W S
Sbjct: 442 LACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTS 501

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI A A+HG G  A+ L+EEM   GV+P  +TF+ +L AC+HVG V++G  + + + + H
Sbjct: 502 MIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKH 561

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I P   HYAC+VD++ RAGL  EA+ FI++MPV+PD + W +LL AC +H ++++ + A
Sbjct: 562 GIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELA 621

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEKL    P +   Y  ++N+YS  GRW + AK  KR K+  V KETG SW  I  +VH 
Sbjct: 622 AEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHV 681

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F  DD +HPQ DT++   A++   +   G+VP+ + +LH
Sbjct: 682 FGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLH 720



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 181/411 (44%), Gaps = 66/411 (16%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQ------NVY----N 84
           S S +  D +  I+ +LS  A  G   +G  +HA  +++  P+  Q      ++Y    +
Sbjct: 287 SYSTMAPDEFT-ITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGS 345

Query: 85  VPNA-------------TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           V NA              + + +LL  Y+K   M++A ++FD M  RD V+W  M+ G+ 
Sbjct: 346 VENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYE 405

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEE 189
           +NG  D     F+  +  G    +  S+T+  +LS C         K IHC       E+
Sbjct: 406 QNGHNDEAMELFRLMIRSG---PEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQ 462

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKM 248
             +V N+++T Y + GS    R+VF  +  R   +TWT++I  L Q+ L E+ + LF +M
Sbjct: 463 SSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEM 522

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW-KLALQSDLCIESALMDMYSKCGS 307
               + P+ +T++  + AC+ +  + EG++    L  K  +  ++   + ++D+ ++ G 
Sbjct: 523 LRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAG- 581

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
                 +F  A+E                         F++ +   +E D     ++L  
Sbjct: 582 ------LFSEAQE-------------------------FIQQMP--VEPDAIAWGSLLSA 608

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             V  +  L +     ++  D   N    + L N+YS CG   D+ K++ R
Sbjct: 609 CRVHKNADLAELAAEKLLSID-PGNSGAYSALSNVYSACGRWNDAAKIWKR 658



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 134/335 (40%), Gaps = 81/335 (24%)

Query: 375 GLGKQIHSLIIKSDFTS--------------------------------------NPFVN 396
           G G+ IH+  +K+   +                                      N F  
Sbjct: 40  GAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTW 99

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L+++Y+K G L D+  VF+ M  R+ VSW  M+    R G   +A++++ +M  +G+ 
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC------VVDMVGRAGL 510
           PT  T  ++L +C+       G        +VH    +    +C      V++M G+ G 
Sbjct: 160 PTQFTLTNVLSSCAATEARGVG-------RKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLFLAQPDSP-APYILMA 568
              AR+  ERMP +  V  W A++       D+ +G+   A  LF   PD     +  + 
Sbjct: 213 AETARAVFERMPER-SVSSWNAMVSL-----DAHLGRMDLALSLFENMPDRTIVSWNAVI 266

Query: 569 NIYSCSGRWKERAKAI---KRM---KEMGVDKET---------GISWIEIEKQVHSFVVD 613
             Y+ +G     AKA+    RM     M  D+ T          +  + I KQVH++++ 
Sbjct: 267 AGYNQNGL---NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILR 323

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            +M      I  V   L+ +    G V N R ++ 
Sbjct: 324 SRM----PYIGQVTNALISMYAKSGSVENARGVMQ 354


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 329/563 (58%), Gaps = 9/563 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y KC QM  A+K+F++    DTV W +MV+G+ +N + +     F + + + 
Sbjct: 141 VGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMD 200

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              LD  +   ++SAC +         +H LV    ++ ++ + N+L+  Y K G     
Sbjct: 201 CVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIA 260

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F +M  ++VI+W+ +I+    N+   E L LF +M      PNS+T +S++ AC+  
Sbjct: 261 ANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVS 320

Query: 271 QALCEGRQIHGI-LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           + L EG++IH I +WK   + D  + +AL+DMY KC   ++A  +F+   + D VS   +
Sbjct: 321 RNLEEGKKIHKIAVWK-GFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVAL 379

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIK 386
           L G+AQNG   ++M +F  M+  GI+  P+ V AV+ +    + LG+ +Q   +H  +++
Sbjct: 380 LSGYAQNGMAYKSMGVFRNMLSDGIQ--PDAV-AVVKILAASSELGIFQQALCLHGYVVR 436

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F SN FV   LI +YSKCG L D++K+F  M  R+ V W+SMIAA+  HG G +ALE+
Sbjct: 437 SGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEI 496

Query: 447 YEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +++M K   V P +VTFLS+L ACSH GLV +G++    M   +++ P +EH+  +VD++
Sbjct: 497 FDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLL 556

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GR G L +A   I RMP+     VW ALLGAC IH + EMG+ AA+ LF   P     YI
Sbjct: 557 GRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYI 616

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++NIY+  G+W   A+   R+KE G+ K  G S +E+   VHSF+  D+ HP +  I+ 
Sbjct: 617 LLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYE 676

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
           +L +L   M  E Y+P+  F+LH
Sbjct: 677 LLRKLEAQMGKEVYIPDLDFLLH 699



 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 278/519 (53%), Gaps = 9/519 (1%)

Query: 137  DMGFGFFKRSLELGFYQLDQAS---FTIILSACDRSELSLVS--KMIHCLVYLCGYEEEV 191
            D+ F        L F+Q  +A+   +  I SA     +S  S  K  H  ++  G + + 
Sbjct: 693  DLDFLLHDTGAVLQFWQRIKATESKYKTIGSAPGTDTISCFSCLKKTHAKIFAYGLQYDS 752

Query: 192  TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
             +       Y       +   VF ++       W  +I G   +  +   L+L+ KM   
Sbjct: 753  RILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEK 812

Query: 252  LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
             + P+   +  ++ +C+GL  L  G+ IH  L      +DL +++AL+DMY+KCG +E A
Sbjct: 813  GLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAA 872

Query: 312  WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFG 369
              +F+     D VS T ++ G+A NG+  E +  F  M  +G  + PN VS  +VL   G
Sbjct: 873  RLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG--VIPNRVSILSVLLACG 930

Query: 370  VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
               +L  G+  HS +I++ F  +  V   +++MYSKCG L+ +  +F   A ++ V W++
Sbjct: 931  NLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSA 990

Query: 430  MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
            MIA++  HG+G KA++L+++M   GV P+ VTF  +L ACSH GL+ +G  + + MTE  
Sbjct: 991  MIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEF 1050

Query: 490  RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
             I+ +  +YAC+VD++GRAG L EA   IE MPV+PD  +W +LLGAC IH + ++ +  
Sbjct: 1051 VIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKI 1110

Query: 550  AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
            A+ LF   P     ++L++NIY+   RW E  K  K M   G +K  G S +E + QVH 
Sbjct: 1111 ADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHK 1170

Query: 610  FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F V D+ HPQ + ++  L EL   M   GYVP   F+LH
Sbjct: 1171 FGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLH 1209



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/509 (25%), Positives = 248/509 (48%), Gaps = 18/509 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T     L S Y KC  ++ A K+FD+ P  +   WN+ +  + R  +++     F   + 
Sbjct: 36  TFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMIC 95

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE-------EVTVGNALITSY 201
                 D  +  I L AC    +  + K+IH      G+ +       ++ VG+AL+  Y
Sbjct: 96  TAGEAPDNFTIPIALKACAGLRMLELGKVIH------GFAKKNDEIGSDMFVGSALVELY 149

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTY 260
            KCG      KVF E +  + + WT++++G  QN   EE L LF +M  +  +  + +T 
Sbjct: 150 SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTL 209

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S V AC+ L  +  G  +HG++ +     DL + ++L+++Y+K G  + A  +F    E
Sbjct: 210 VSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPE 269

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D +S + ++  +A N    EA+ LF +M++   E +   V + L    V  +L  GK+I
Sbjct: 270 KDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKI 329

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H + +   F  +  V+  LI+MY KC   ++++ +F R+  ++ VSW ++++ +A++G  
Sbjct: 330 HKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMA 389

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
           +K++ ++  M  +G++P  V  + +L A S +G+  + +  L         +      A 
Sbjct: 390 YKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQAL-CLHGYVVRSGFNSNVFVGAS 448

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           ++++  + G L +A    + M V+ DV++W +++ A  IHG         +++       
Sbjct: 449 LIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVR 507

Query: 561 PAPYILMANIYSCS--GRWKERAKAIKRM 587
           P     ++ + +CS  G  +E  K   RM
Sbjct: 508 PNNVTFLSILSACSHAGLVEEGLKIFDRM 536



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 210/405 (51%), Gaps = 25/405 (6%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H  V+  G   +      L + Y KC S  + RKVF E    NV  W + +    + + 
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 238 YEEGLKLFVKMHLGLIN----PNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDL 292
           +EE L+LF   HL +      P++ T   ++ AC+GL+ L  G+ IHG   K   + SD+
Sbjct: 83  WEETLRLF---HLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDM 139

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + SAL+++YSKCG + +A ++FE  +  D V  T ++ G+ QN   EEA+ LF +MV  
Sbjct: 140 FVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMM 199

Query: 353 G-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             + +DP  + +V+       ++  G  +H L+I+ +F  +  + N L+N+Y+K G  + 
Sbjct: 200 DCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKI 259

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +FS+M  ++ +SW++MIA +A +    +AL L+ EM  +  EP  VT +S L AC+ 
Sbjct: 260 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA- 318

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKP 525
              V++ +E  K   ++H+I+              ++DM  +     EA    +R+P K 
Sbjct: 319 ---VSRNLEEGK---KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KK 371

Query: 526 DVLVWQALLGACSIHGDS--EMGKYAAEKLFLAQPDSPAPYILMA 568
           DV+ W ALL   + +G +   MG +        QPD+ A   ++A
Sbjct: 372 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILA 416



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 188/397 (47%), Gaps = 15/397 (3%)

Query: 83   YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
            Y +   + I       Y+  +++  A  +F+D+P   +  WN M+ GF  +G F      
Sbjct: 746  YGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLEL 805

Query: 143  FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
            + + +E G  + D+ +F   L +C         K+IH  +  CG   ++ V  AL+  Y 
Sbjct: 806  YSKMMEKGL-KPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYA 864

Query: 203  KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
            KCG   + R VF +M VR++++WT++ISG   N    E L  F  M    + PN ++ LS
Sbjct: 865  KCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILS 924

Query: 263  SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
             ++AC  L AL +G   H  + +   + D+ + +A+MDMYSKCGS++ A  +F+     D
Sbjct: 925  VLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKD 984

Query: 323  GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             V  + ++  +  +G   +A+ LF +MVKAG+       + VL        L  GK    
Sbjct: 985  LVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQ 1044

Query: 383  LIIKSDFTSNPFVNNG-LINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
            L+ +    +    N   ++++  + G L +++ +   M      S W S++ A   H N 
Sbjct: 1045 LMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNN- 1103

Query: 441  FKALELYEEMKLEGVEPTDVTF-LSLLHACSHVGLVN 476
               L+L E++        D  F L  +HA  HV L N
Sbjct: 1104 ---LDLAEKI-------ADHLFHLDPVHAGYHVLLSN 1130



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 135/280 (48%), Gaps = 21/280 (7%)

Query: 270 LQALCEGR---QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            QA   GR   Q+H  ++K  +  D    + L  +Y+KC S++ A ++F+     +    
Sbjct: 11  FQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLW 70

Query: 327 TVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              L  + +    EE ++LF  M+  AG   D   +   L        L LGK IH    
Sbjct: 71  NSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAK 130

Query: 386 KSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           K+D   S+ FV + L+ +YSKCG + +++KVF      ++V W SM+  + ++ +  +AL
Sbjct: 131 KNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEAL 190

Query: 445 ELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA---- 499
            L+ +M  ++ V    VT +S++ AC+   L+N     +K+ + VH +  R E       
Sbjct: 191 ALFSQMVMMDCVVLDPVTLVSVVSACAQ--LLN-----VKAGSCVHGLVIRREFDGDLPL 243

Query: 500 --CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              ++++  + G    A +   +MP K DV+ W  ++ AC
Sbjct: 244 VNSLLNLYAKTGCEKIAANLFSKMPEK-DVISWSTMI-AC 281



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 86/204 (42%), Gaps = 16/204 (7%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+HS + K+    + F    L ++Y+KC  L+ + KVF      N   WNS + ++ R  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 439 NGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
              + L L+  M    G  P + T    L AC+       G+  L+    +H  + + + 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACA-------GLRMLELGKVIHGFAKKNDE 134

Query: 498 Y-------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
                   + +V++  + G + EA    E    +PD ++W +++     + D E      
Sbjct: 135 IGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 551 EKLFLAQPDSPAPYILMANIYSCS 574
            ++ +       P  L++ + +C+
Sbjct: 194 SQMVMMDCVVLDPVTLVSVVSACA 217



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 11/138 (7%)

Query: 40   VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
            V+ N V I  +L      G    G   H+  I+T   FD           ++  +++  Y
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFD----------ILVATAIMDMY 964

Query: 100  LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
             KC  +  A  LFD+   +D V W+ M++ +  +G        F + ++ G  +    +F
Sbjct: 965  SKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGV-RPSHVTF 1023

Query: 160  TIILSACDRSELSLVSKM 177
            T +LSAC  S L    KM
Sbjct: 1024 TCVLSACSHSGLLEEGKM 1041


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/612 (33%), Positives = 347/612 (56%), Gaps = 19/612 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           VL N   +S +++    EG   +G  +HA  +K          +    A  ++NSL+S Y
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK----------HGFEEAIPVFNSLISLY 239

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            +   +R+A  +FD M +RD V+WN+M++G++RNG+    F  F + ++L   +    +F
Sbjct: 240 SRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK-MQLAGVKPTHMTF 298

Query: 160 TIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
             ++ +C    EL+LV K++ C     G+  +  V  AL+ +  KC        +F  M 
Sbjct: 299 ASVIKSCASLRELALV-KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLME 357

Query: 219 V-RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
             +NV++WTA+ISG +QN   ++ + LF +M    + PN  TY S+++       + E  
Sbjct: 358 EGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTY-SAILTVHYPVFVSE-- 414

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
            +H  + K   +    + +AL+D Y K G+  DA ++FE  E  D ++ + +L G+AQ G
Sbjct: 415 -MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTG 473

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG-LGKQIHSLIIKSDFTSNPFVN 396
             EEA +LF +++K GI+ +    S+V+      T+    GKQ H+  IK    +   V+
Sbjct: 474 ETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVS 533

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + L+ MY+K G+++ + +VF R   R+ VSWNSMI+ +++HG   KALE+++EM+   ++
Sbjct: 534 SALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMD 593

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
              VTF+ ++ AC+H GLV KG ++  SM   H I+P  +HY+C++D+  RAG+L +A  
Sbjct: 594 VDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMG 653

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            I  MP  P   VW+ LLGA  +H + E+G+ AAEKL   QP+  A Y+L++N+Y+ +G 
Sbjct: 654 IINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGN 713

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W+ER    K M +  V KE G SWIE++ + +SF+  D  HP ++ I+  L+EL   + D
Sbjct: 714 WQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKD 773

Query: 637 EGYVPNKRFILH 648
            GY P+ + + H
Sbjct: 774 AGYQPDTKNVFH 785



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 246/461 (53%), Gaps = 19/461 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+  Y+K + + +  ++FD+M  R+ VSW ++++G+  NG +   +  F +    G
Sbjct: 130 VGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG 189

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               ++ + + +++A     +  +   +H +V   G+EE + V N+LI+ Y + G     
Sbjct: 190 VLP-NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDA 248

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF +M +R+ +TW ++I+G V+N    E  ++F KM L  + P  +T+ S + +C+ L
Sbjct: 249 RDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASL 308

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-LDGVSMTVI 329
           + L   + +     K    +D  + +ALM   SKC  ++DA  +F   EE  + VS T +
Sbjct: 309 RELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV-FGVDTSLGLGKQIHSLIIKSD 388
           + G  QNG  ++A+ LF +M + G++ +    SA+L V + V  S     ++H+ +IK++
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS-----EMHAEVIKTN 423

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +  +  V   L++ Y K G+  D++KVF  +  ++ ++W++M+A +A+ G   +A +L+ 
Sbjct: 424 YERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFH 483

Query: 449 EMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VD 503
           ++  EG++P + TF S+++AC S      +G +F       + I  R  +  CV    V 
Sbjct: 484 QLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF-----HAYAIKMRLNNALCVSSALVT 538

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G +  A    +R   + D++ W +++   S HG ++
Sbjct: 539 MYAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQAK 578



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 233/473 (49%), Gaps = 17/473 (3%)

Query: 108 AVKLFDDMPMRDTV--SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           A  LFD +P R T     N ++  + R+ +       F  SL     Q D+++ + + + 
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFV-SLLHSSLQPDESTLSCVFNI 102

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  S    + + +HC     G  + V+VG +L+  Y K  + + GR+VF EM  RNV++W
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSW 162

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           T++++G   N LY    +LF +M    + PN  T  + + A      +  G Q+H ++ K
Sbjct: 163 TSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVK 222

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
              +  + + ++L+ +YS+ G + DA  +F+  E  D V+   ++ G+ +NG + E  ++
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F KM  AG++      ++V+        L L K +    +KS FT++  V   L+   SK
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSK 342

Query: 406 CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           C +++D++ +FS M   +N VSW +MI+   ++G   +A+ L+ +M+ EGV+P   T+ +
Sbjct: 343 CKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSA 402

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L     V +     E +K  T   R S        ++D   + G  I+A    E +  K
Sbjct: 403 ILTVHYPVFVSEMHAEVIK--TNYERSSSVG---TALLDAYVKLGNTIDAVKVFEIIEAK 457

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDSPAPYILMANIYSCS 574
            D++ W A+L   +  G++E     A KLF   + +   P  +   + I +C+
Sbjct: 458 -DLMAWSAMLAGYAQTGETE----EAAKLFHQLIKEGIKPNEFTFSSVINACA 505


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/589 (36%), Positives = 318/589 (53%), Gaps = 12/589 (2%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
            LG + HA  IKT    DN      P  + I+N L++ Y K D+  +A  L    P R  
Sbjct: 23  RLGRAAHAQIIKTL---DN------PLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSV 73

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           V+W  +++G ++NG F      F  ++     Q +  +F     A       LV K +H 
Sbjct: 74  VTWTALIAGSVQNGRFTSALFHFS-NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHA 132

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           L    G   +V VG +    Y K G +   RK+F EM  RN+ TW A +S  V    Y++
Sbjct: 133 LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDD 192

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L  F++       PN +T+ + + AC+G   L  GRQ+HG + +   ++D+ + + L+D
Sbjct: 193 ALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLID 252

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
            Y KC  V  +  IF    + + VS   ++V + QN  EE+A  +F++  K GIE    M
Sbjct: 253 FYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFM 312

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           VS+VL      + L +GK +H+L +K+    N FV + L++MY KCG +ED+ + F  M 
Sbjct: 313 VSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP 372

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKL--EGVEPTDVTFLSLLHACSHVGLVNKG 478
            RN V+WN+MI  +A  G    A+ L++EM      V P  VTF+ +L ACS  G VN G
Sbjct: 373 ERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVG 432

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           ME  +SM   + I P AEHYACVVD++GRAG++ +A  FI++MP++P V VW ALLGA  
Sbjct: 433 MEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASK 492

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           + G SE+GK AA+ LF   P     ++L++N+++ +GRW+E     K MK++G+ K  G 
Sbjct: 493 MFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGC 552

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           SWI     VH F   D  H +   I  +LA+L   M   GY+P+  F L
Sbjct: 553 SWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFAL 601


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/581 (36%), Positives = 329/581 (56%), Gaps = 11/581 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG S+HA   K    FD+           +  +L+  Y  C     A ++FD +  +D V
Sbjct: 163 LGFSVHACVYKL--GFDSD--------AFVGTALIDCYSVCGYAECARQVFDAIEYKDMV 212

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  MV+ ++ N  F+     F R   +GF + +  +F  +L AC   E+  V K +H  
Sbjct: 213 SWTGMVACYVENECFEESLKLFSRMRIVGF-KPNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
            +   Y EE+ VG  LI  Y K G      +VF EM   +VI W+ +I+   Q++  EE 
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEA 331

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +++F +M  GL+ PN  T  S + AC+ L  L  G QIH  + K+ L  ++ + +ALMDM
Sbjct: 332 IEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDM 391

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KCG +E++ Q+F  +     VS   ++VG+ Q G  E+A+ LF  M++  ++      
Sbjct: 392 YAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTY 451

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           S+VL       +L  G QIHSL +K+ +  N  V N LI+MY+KCG+++D+  VF  +  
Sbjct: 452 SSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLRE 511

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
            + VSWN+MI+ ++ HG   +AL+ +E M     +P  VTF+ +L ACS+ GL+++G  +
Sbjct: 512 HDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAY 571

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            KSM E + I P AEHY C+V ++GR+G L +A   +  +P +P V+VW+ALL AC IH 
Sbjct: 572 FKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHN 631

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D E+G+ +A+++   +P+  A ++L++NIY+ + RW   A     MK  G+ KE G+SWI
Sbjct: 632 DVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWI 691

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           E + +VH F V D  HP    I+G+L  L     +EGYVP+
Sbjct: 692 ENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPD 732



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/496 (31%), Positives = 270/496 (54%), Gaps = 21/496 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL    + G    G  LH   IK     D              N LL+FY+K D + +A 
Sbjct: 50  LLQSCIRNGDCATGKYLHCEIIKKGNCLD----------LFANNILLNFYVKYDSLPDAA 99

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           KLFD+MP R+TVS+ T++ G+ +   F    G F R L+   ++L+   F+ +L     +
Sbjct: 100 KLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSR-LQGEGHELNPFVFSTVLKLLVSA 158

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           E + +   +H  VY  G++ +  VG ALI  Y  CG +   R+VF  +  +++++WT ++
Sbjct: 159 EWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMV 218

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +  V+N+ +EE LKLF +M +    PN+ T+ S + AC GL+    G+ +HG  +K +  
Sbjct: 219 ACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYL 278

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            +L +   L+D+Y K G V+DA Q+FE   + D +  + ++  +AQ+   EEA+++F +M
Sbjct: 279 EELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRM 338

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            +  +  +   ++++L        L LG QIH  ++K     N FV+N L++MY+KCG +
Sbjct: 339 RRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRM 398

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           E+S+++FS       VSWN++I  + + GNG KAL L+++M    V+ T+VT+ S+L AC
Sbjct: 399 ENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRAC 458

Query: 470 SHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + +  +  G +     +K++ + + +   A     ++DM  + G + +AR  +  M  + 
Sbjct: 459 AGIAALEPGSQIHSLSVKTIYDKNTVVGNA-----LIDMYAKCGNIKDAR-LVFDMLREH 512

Query: 526 DVLVWQALLGACSIHG 541
           D + W A++   S+HG
Sbjct: 513 DQVSWNAMISGYSVHG 528



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 145/301 (48%), Gaps = 15/301 (4%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           N+  Y S + +C        G+ +H  + K     DL   + L++ Y K  S+ DA ++F
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   + + VS   ++ G++Q     EA+ LF ++   G E++P + S VL +        
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           LG  +H+ + K  F S+ FV   LI+ YS CG  E + +VF  +  ++ VSW  M+A + 
Sbjct: 163 LGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYV 222

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----HVGLVNKGMEFLKSMTEVHR 490
            +    ++L+L+  M++ G +P + TF S+L AC      +VG    G  F  S  E   
Sbjct: 223 ENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           +         ++D+  ++G + +A    E MP K DV+ W  ++     +  SE  + A 
Sbjct: 283 VGVE------LIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIAR---YAQSEQSEEAI 332

Query: 551 E 551
           E
Sbjct: 333 E 333


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 315/564 (55%), Gaps = 1/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N T + N+L+S Y KC  +R+A ++FD M  RD VSW T+   +  +G  +     + 
Sbjct: 160 LANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYH 219

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             L+    +  + ++  +LSAC         K IH  +    Y  +V V  AL   Y KC
Sbjct: 220 AMLQERV-RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKC 278

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G+    R+VF  +  R+VI W  +I G V +   EE    F +M    + P+  TY + +
Sbjct: 279 GAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVL 338

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+    L  G++IH    K  L SD+   +AL++MYSK GS++DA Q+F+   + D V
Sbjct: 339 SACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVV 398

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T +L  +A      E+   F +M++ G++ +      VL       +L  GK+IH+ +
Sbjct: 399 SWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEV 458

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K+   ++  V N L++MY KCG +ED+I+VF  M+ R+ V+WN++I    ++G G +AL
Sbjct: 459 VKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEAL 518

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           + YE MK EG+ P   TF+++L AC    LV +G      M++ + I P  +HYAC+VD+
Sbjct: 519 QRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDI 578

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + RAG L EA   I  +P+KP   +W ALL AC IH + E+G+ AAE     +P +   Y
Sbjct: 579 LARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLY 638

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           + ++ IY+ +G W++ AK  K MKE GV KE G SWIEI  +VHSFV  D+ HP+   I+
Sbjct: 639 VSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIY 698

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L  L + M   GYVP+ RF++H
Sbjct: 699 AELETLKKQMKSLGYVPDTRFVMH 722



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/502 (30%), Positives = 251/502 (50%), Gaps = 16/502 (3%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFY 99
           +D+Y D  +LL    K     +G  +H   ++   +P    NVY       I N+LL  Y
Sbjct: 26  VDSY-DYVKLLQSCVKAKDLAVGKQVHEHILRCGVKP----NVY-------ITNTLLKLY 73

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
             C  +  A +LFD    +  VSWN M+SG+   G     F  F   ++    + D+ +F
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFT-LMQQERLEPDKFTF 132

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             ILSAC    +    + IH  V   G   + TVGNALI+ Y KCGS    R+VF  M  
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMAS 192

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+ ++WT +     ++   EE LK +  M    + P+ +TY++ + AC  L AL +G+QI
Sbjct: 193 RDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQI 252

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + +    SD+ + +AL  MY KCG+ +DA ++FE     D ++   ++ GF  +G  
Sbjct: 253 HAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQL 312

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA   F +M++ G+  D    + VL        L  GK+IH+   K    S+    N L
Sbjct: 313 EEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNAL 372

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           INMYSK G ++D+ +VF RM  R+ VSW +++  +A      ++   +++M  +GV+   
Sbjct: 373 INMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANK 432

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +T++ +L ACS+   +  G E    + +   ++  A   A ++ M  + G + +A    E
Sbjct: 433 ITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNA-LMSMYFKCGSVEDAIRVFE 491

Query: 520 RMPVKPDVLVWQALLGACSIHG 541
            M ++ DV+ W  L+G    +G
Sbjct: 492 GMSMR-DVVTWNTLIGGLGQNG 512



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 205/383 (53%), Gaps = 2/383 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q+D   +  +L +C +++   V K +H  +  CG +  V + N L+  Y  CGS +  R+
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ 84

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +   ++V++W  +ISG     L +E   LF  M    + P+  T++S + ACS    
Sbjct: 85  LFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAV 144

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH  + +  L +D  + +AL+ MY+KCGSV DA ++F+     D VS T +   
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A++G+ EE+++ +  M++  +         VL   G   +L  GKQIH+ I++S++ S+
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+  L  MY KCG  +D+ +VF  ++ R+ ++WN+MI  F   G   +A   +  M  
Sbjct: 265 VRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE 324

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV P   T+ ++L AC+  G + +G E      +   +S        +++M  +AG + 
Sbjct: 325 EGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSD-VRFGNALINMYSKAGSMK 383

Query: 513 EARSFIERMPVKPDVLVWQALLG 535
           +AR   +RMP K DV+ W  LLG
Sbjct: 384 DARQVFDRMP-KRDVVSWTTLLG 405


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 322/607 (53%), Gaps = 13/607 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V  + +LS+ A E    LG  LH   +      D+           + N+LL+ Y KC
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSP----------VANTLLAMYSKC 207

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++ A KLFD  P  D VSWN ++SG+++NG        F+  +  G  + D  +F   
Sbjct: 208 QCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI-KPDSITFASF 266

Query: 163 LSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           L  C    LSL   K IH  +       +V + +ALI  YFKC      +K+  +    +
Sbjct: 267 LP-CVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFD 325

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            +  T +ISG V N   +E L+ F  +    + P S+T+ S   A +GL AL  G+++HG
Sbjct: 326 TVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHG 385

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K  L     + SA++DMY+KCG ++ A ++F    E D +    ++   +QNG   E
Sbjct: 386 SIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +M   G   D   +S  L       +L  GK+IH L+IK    S+ +  + LI+
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLID 505

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG+L  S +VF RM  RN VSWNS+I+A+  HG+  + L L+ EM   G++P  VT
Sbjct: 506 MYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVT 565

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL ++ AC H G V++G+ +   MTE + I  R EHYACV DM GRAG L EA   I  M
Sbjct: 566 FLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSM 625

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  PD  VW  LLGAC IHG+ E+ + A++ LF   P +   Y+L+AN+ + +G+W++  
Sbjct: 626 PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVL 685

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K    MKE GV K  G SWIE+    H FV  D  HP    I+ VL  LL  +  EGYVP
Sbjct: 686 KVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVP 745

Query: 642 NKRFILH 648
                +H
Sbjct: 746 QLYLPMH 752



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 250/467 (53%), Gaps = 13/467 (2%)

Query: 81  NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF 140
           N+  +     + +SL+  Y +   + +A  LFD++P +D+V WN M++G+++NG+     
Sbjct: 85  NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAI 144

Query: 141 GFFKRSLELGFYQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
             F   LE+   ++  +  +F  +LS C    +  +   +H +   CG E +  V N L+
Sbjct: 145 KIF---LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLL 201

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y KC    + RK+F      ++++W  +ISG VQN L  E   LF  M    I P+S+
Sbjct: 202 AMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSI 261

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T+ S +   + L +L   ++IHG + + A+  D+ ++SAL+D+Y KC  VE A +I   +
Sbjct: 262 TFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQS 321

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D V  T ++ G+  NG  +EA++ F  +V+  ++      S++   F    +L LGK
Sbjct: 322 SSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGK 381

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           ++H  IIK+       V + +++MY+KCG L+ + +VF+R+  ++++ WNSMI + +++G
Sbjct: 382 ELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEH 497
              +A+ L+ +M +EG     V+    L AC+++  ++ G E    M +     P R++ 
Sbjct: 442 RPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK----GPLRSDL 497

Query: 498 YA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           YA   ++DM  + G L  +R   +RM  + +V  W +++ A   HGD
Sbjct: 498 YAESSLIDMYAKCGNLNFSRRVFDRMQERNEV-SWNSIISAYGNHGD 543



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 233/443 (52%), Gaps = 3/443 (0%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y++   +++A  LF  + +  T +WN M+ GF   G+F+    F+ + L  G    D+ +
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGV-SPDKYT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F  ++ AC   +   + K++H  V L G +E+V VG++LI  Y + G  S  + +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            ++ + W  +++G V+N      +K+F++M    I PNS+T+   +  C+    L  G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HGI     L+ D  + + L+ MYSKC  ++ A ++F+ + + D VS   I+ G+ QNG 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             EA  LF  M+ AGI+ D    ++ L       SL   K+IH  II+     + F+ + 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI++Y KC D+E + K+  + +  ++V   +MI+ +  +G   +ALE +  +  E ++PT
Sbjct: 301 LIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VTF S+  A + +  +N G E   S+ +  ++  +    + ++DM  + G L  A    
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 519 ERMPVKPDVLVWQALLGACSIHG 541
            R+  K D + W +++ +CS +G
Sbjct: 420 NRITEK-DAICWNSMITSCSQNG 441



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY + G L+D+  +F  +    + +WN MI  F   G    AL  Y +M   GV P   T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F  ++ AC  +  V  G + +     +  +       + ++ +    G L +A+   + +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 522 PVKPDVLVWQALLGACSIHGDS 543
           P K  VL W  +L     +GDS
Sbjct: 120 PQKDSVL-WNVMLNGYVKNGDS 140


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 323/559 (57%), Gaps = 4/559 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KC ++  A  +FD M  R+ VSW  ++ G ++NG        F + + L   
Sbjct: 11  NDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSK-MGLSGV 69

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F+  L AC       + + IH +    G++    VGN++I  Y KCG  +    
Sbjct: 70  KPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAAC 129

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M VRN+I+W A+I+G       E+ L LF KM       +  T+ S++ ACS L A
Sbjct: 130 MFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGA 189

Query: 273 LCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + EG QIH  L         +  +  AL+D+Y KCG +  A ++F   EE   +S T ++
Sbjct: 190 IKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALI 249

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +G+AQ G   E+M+LF ++ ++ I++D  ++S+++GVF     +  GKQ+H+  IK    
Sbjct: 250 LGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSG 309

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V N +++MY KCG + ++ ++FS M  RN +SW  MI  + +HG G +A+ L++EM
Sbjct: 310 VDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEM 369

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +L+  EP DVT+L++L  CSH GLV KG E+   +   H I  R EHYAC+VD++GRAG 
Sbjct: 370 QLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGR 429

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA++ ++ MP++ +V +WQ LL AC +HGD E+GK     L     ++P  Y++M+NI
Sbjct: 430 LKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNI 489

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G WKE  +  + +K   + KE G SW+EI+K+VH F   D  HP  + IH +L E+
Sbjct: 490 YADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEM 549

Query: 631 LRLMIDE-GYVPNKRFILH 648
            R M +E GYV   ++ LH
Sbjct: 550 ERRMKEELGYVYGVKYALH 568



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 196/395 (49%), Gaps = 13/395 (3%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  ++ + N LI  Y KCG       VF  M  RNV++WTA++ G +QN    E L LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            KM L  + PN  T+ +++ AC  L  L  GRQIH I  K        + ++++DMYSKC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G + +A  +FE     + +S   ++ G+   GF E+A+ LF KM + G  +D    ++ L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
                  ++  G QIH+ +I   F  + N  V   LI++Y KCG L  + +VFS +  ++
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            +SW ++I  +A+ GN  +++EL+ +++   ++       S++   +   LV +G +   
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHA 301

Query: 484 SMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                 ++    +   C  ++DM  + G++ EA      MP + +V+ W  ++     HG
Sbjct: 302 FAI---KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR-NVISWTVMITGYGKHG 357

Query: 542 DSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCS 574
              +GK A       Q DS  P     +A +  CS
Sbjct: 358 ---LGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCS 389



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 210/422 (49%), Gaps = 36/422 (8%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  +H   +KT   FD  NV        + NS++  Y KC ++  A  +F+ MP+R+ +
Sbjct: 91  IGRQIHDICVKT--GFDMVNV--------VGNSIIDMYSKCGRINEAACMFEVMPVRNLI 140

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK--MIH 179
           SWN M++G+   G  +     F++  E+G + LD+ +FT  L AC  S+L  + +   IH
Sbjct: 141 SWNAMIAGYTVAGFCEKALVLFQKMQEVGGF-LDEFTFTSTLKAC--SDLGAIKEGNQIH 197

Query: 180 CLVYLCG--YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
             +   G  Y     V  ALI  Y KCG     R+VF  +  ++VI+WTA+I G  Q   
Sbjct: 198 AFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGN 257

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC-EGRQIHGILWKLALQSDLCIES 296
             E ++LF ++    I  +    LSS+M      AL  +G+Q+H    K+    D+ + +
Sbjct: 258 LAESMELFRQLRESSIQVDGFI-LSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCN 316

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +++DMY KCG + +A ++F      + +S TV++ G+ ++G  +EA++LF +M     E 
Sbjct: 317 SILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEP 376

Query: 357 DPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNG-LINMYSKCGDLEDS 412
           D     AVL   G   S GL   G++  S +           +   ++++  + G L+++
Sbjct: 377 DDVTYLAVL--LGCSHS-GLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEA 433

Query: 413 IKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEE-----MKLEGVEPTDVTFLSLL 466
             +   M    +V  W ++++A   HG+    LEL +E     ++L+   P +   +S +
Sbjct: 434 KNLVDSMPLEANVGIWQTLLSACRVHGD----LELGKEVGGILLRLDSENPVNYVMMSNI 489

Query: 467 HA 468
           +A
Sbjct: 490 YA 491


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/597 (34%), Positives = 328/597 (54%), Gaps = 14/597 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFI-KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++ ++   AK      G  LHA  I   + P            T + N L++ Y KC ++
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTP-----------CTFLTNHLVNMYSKCGEL 56

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
            +A+KLFD MP R+ VSW  M+SG  +N +F      F   + +      Q +F+  + A
Sbjct: 57  DHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFC-GMRICGEVPTQFAFSSAIRA 115

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C       + K +HCL    G   E+ VG+ L   Y KCG+     KVF EM  ++ ++W
Sbjct: 116 CASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSW 175

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA+I G  +   +EE L  F KM    +  +     S++ AC  L+A   GR +H  + K
Sbjct: 176 TAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK 235

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV-SMTVILVGFAQNGFEEEAMQ 344
           L  +SD+ + +AL DMYSK G +E A  +F    E   V S T ++ G+ +    E+ + 
Sbjct: 236 LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLS 295

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +FV++ + GIE +    S+++       +L  G Q+H+ ++K +F  +PFV++ L++MY 
Sbjct: 296 VFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYG 355

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG LE +I+ F  +     ++WNS+++ F +HG G  A++ +E M   GV+P  +TF+S
Sbjct: 356 KCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFIS 415

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           LL  CSH GLV +G+++  SM + + + P  EHY+CV+D++GRAG L EA+ FI RMP +
Sbjct: 416 LLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFE 475

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P+   W + LGAC IHGD EMGK AAEKL   +P +    +L++NIY+   +W++     
Sbjct: 476 PNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVR 535

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            RM++  V K  G SW+++  + H F  +D  H +   I+  L  LL  +   GYVP
Sbjct: 536 MRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVP 592



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 114/217 (52%), Gaps = 3/217 (1%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D N ++ V+  +     L  GKQ+H+L+I + +T   F+ N L+NMYSKCG+L+ ++K+F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  RN VSW +MI+  +++    +A+  +  M++ G  PT   F S + AC+ +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            G + +  +     I       + + DM  + G + +A    E MP K D + W A++  
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
            S  G+ E    A +K+ + +  +   ++L + + +C
Sbjct: 182 YSKIGEFEEALLAFKKM-IDEEVTIDQHVLCSTLGAC 217


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/591 (33%), Positives = 337/591 (57%), Gaps = 37/591 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y +   + +A ++F  +  RD  SWN ++    ++G++      FK  ++    
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKE-MKCDM- 203

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  ++  ++S     E+    + IH  +   G++ ++ V  ALI  Y KCGSS   R+
Sbjct: 204 KPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEARE 263

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M+ R++++W  +I   VQN  + E L+L+ K+ +        T++S + ACS ++A
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKA 323

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +GR +H  + +  L S++ + +AL++MY+KCGS+E+A ++F   +  D V+ + ++  
Sbjct: 324 LAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGA 383

Query: 333 FAQNGFEEEA----------------------------------MQLFVKMV-KAGIEID 357
           +A NG+ ++A                                  M++F +M   AG++ D
Sbjct: 384 YASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPD 443

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                AVL        L   K +H+ I +S+  SN  V N LINMY++CG LE++ ++F+
Sbjct: 444 AVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFA 503

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
               +  VSW +M+AAF+++G   +AL+L++EM LEGV+P DVT+ S+L  C+H G + +
Sbjct: 504 AAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQ 563

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G  +   M E+H ++P A+H+A +VD++GR+G L +A+  +E MP +PD + W   L AC
Sbjct: 564 GWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTAC 623

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            IHG  E+G+ AAE+++   P S APYI M+NIY+  G W++ A   K+M+E G+ K  G
Sbjct: 624 RIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPG 683

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +S+IE++ ++H F    K HP+ D I   L  L  LM   GYVP+ + +LH
Sbjct: 684 LSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/510 (29%), Positives = 258/510 (50%), Gaps = 16/510 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           T++ N+L+S Y KCD + +A  +F+ M    R+ VSWN M++ + +NG        + R 
Sbjct: 42  TMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWR- 100

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L     D  +F  +L AC  S L+   + IH  V+  G +   ++ NAL+T Y + GS
Sbjct: 101 MNLQGLGTDHVTFVSVLGAC--SSLAQ-GREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               +++F  ++ R+  +W AVI    Q+  +   L++F +M   +  PNS TY++ +  
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDM-KPNSTTYINVISG 216

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S  + L EGR+IH  +      SDL + +AL++MY KCGS  +A ++F+  ++ D VS 
Sbjct: 217 FSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW 276

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            V++  + QNG   EA++L+ K+   G +       ++LG      +L  G+ +HS I++
Sbjct: 277 NVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILE 336

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               S   V   L+NMY+KCG LE++ KVF+ M  R++V+W+++I A+A +G G  A + 
Sbjct: 337 RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKA 396

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            +     G   T + + +++      G     M+  + MT    + P A  +  V++   
Sbjct: 397 RKVFDRLGSRDT-ICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455

Query: 507 RAGLLIEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPA 562
             G L E ++    I    ++ +V+V   L+   +  G  E     AE+LF A  + +  
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLE----EAERLFAAAKEKTVV 511

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGV 592
            +  M   +S  GR+ E     + M   GV
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 221/408 (54%), Gaps = 17/408 (4%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D  +F  +L +C         + +H  +    +E +  VGNALI+ Y KC S    R 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 213 VFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           VF  M  R RNV++W A+I+   QN    E L L+ +M+L  +  + +T++S + ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L +GR+IH  ++   L S   + +AL+ MY++ GSV DA ++F+  +  D  S   ++
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS--LGLGKQIHSLIIKSD 388
           +  +Q+G    A+++F +M     ++ PN  + +  + G  T   L  G++IH+ I+ + 
Sbjct: 181 LAHSQSGDWSGALRIFKEM---KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S+  V   LINMY KCG   ++ +VF +M  R+ VSWN MI  + ++G+  +ALELY+
Sbjct: 238 FDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQ 297

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           ++ +EG + T  TF+S+L ACS V  + +G      + E    S  A   A +V+M  + 
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA-LVNMYAKC 356

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA--AEKLF 554
           G L EAR     M  + D + W  L+GA + +G    GK A  A K+F
Sbjct: 357 GSLEEARKVFNAMKNR-DAVAWSTLIGAYASNG---YGKDARKARKVF 400



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 194/420 (46%), Gaps = 79/420 (18%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +L++ Y KC     A ++FD M  RD VSWN M+  +++NG+F      +++ L++
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQK-LDM 301

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             ++  +A+F  IL AC   +     +++H  +   G + EV V  AL+  Y KCGS   
Sbjct: 302 EGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEE 361

Query: 210 GRKVFGEMR----------------------------------VRNVITWTAVISGLVQN 235
            RKVF  M+                                   R+ I W A+I+  VQN
Sbjct: 362 ARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQN 421

Query: 236 QLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
                 +K+F +M     + P+++T+++ + AC+ L  L E + +H  + +  L+S++ +
Sbjct: 422 GCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVV 481

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + L++MY++CGS+E+A ++F  A+E   VS T ++  F+Q G   EA+ LF +M   G+
Sbjct: 482 TNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           + D    +++L V                                    +  G LE   +
Sbjct: 542 KPDDVTYTSILFVC-----------------------------------THGGSLEQGWR 566

Query: 415 VFSRMAPRNSVS-----WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            F+ MA  + ++     + +M+    R G  F A EL E M     EP  V +++ L AC
Sbjct: 567 YFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPF---EPDPVAWMTFLTAC 623


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/552 (38%), Positives = 310/552 (56%), Gaps = 7/552 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKRSLEL 149
            SL+  Y K   + + +K+F  MP R+T +W+TMVSG+   G  +     F  F R  E 
Sbjct: 157 TSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEE 216

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G        FT +LS+   +    + + IHC+    G    V + NAL+T Y KC S + 
Sbjct: 217 G--SDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNE 274

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F     RN ITW+A+++G  QN    E +KLF +M    I P+  T +  + ACS 
Sbjct: 275 ACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSD 334

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  L EG+Q+H  L KL  +  L   +AL+DMY+K G + DA + F+  +E D    T +
Sbjct: 335 ICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSL 394

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           + G+ QN   EEA+ L+ +M  AGI   DP M S VL       +L LGKQ+H   IK  
Sbjct: 395 ISGYVQNSDNEEALILYRRMKTAGIIPNDPTMAS-VLKACSSLATLELGKQVHGHTIKHG 453

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F     + + L  MYSKCG LED   VF R   ++ VSWN+MI+  + +G G +ALEL+E
Sbjct: 454 FGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFE 513

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM  EG+EP DVTF++++ ACSH G V +G  +   M++   + P+ +HYAC+VD++ RA
Sbjct: 514 EMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRA 573

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+ FIE   +   + +W+ LL AC  HG  E+G YA EKL        + Y+ ++
Sbjct: 574 GQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLS 633

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
            IY+  GR ++  +  K M+  GV KE G SWIE++ Q H FVV D MHP  +    ++ 
Sbjct: 634 GIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVC 693

Query: 629 ELLRLMIDEGYV 640
            + R MI+EG+V
Sbjct: 694 LVSRQMIEEGFV 705



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 240/490 (48%), Gaps = 11/490 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++FY KC ++  A  +F+ +  +D VSWN++++G+ +NG     +   +   E+   
Sbjct: 53  NVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ 112

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +   ++T+  I  A    + S V +  H LV       ++ V  +L+  Y K G    G
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDG 172

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF----VKMHLGLINPNSLTYLSSVMA 266
            KVF  M  RN  TW+ ++SG       EE +K+F     +   G  +    T + S +A
Sbjct: 173 LKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLA 232

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            +    L  GRQIH I  K  L   + + +AL+ MYSKC S+ +A ++F+ + + + ++ 
Sbjct: 233 ATIYVGL--GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITW 290

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + ++ G++QNG   EA++LF +M  AGI+     +  VL        L  GKQ+HS ++K
Sbjct: 291 SAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLK 350

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F  + F    L++MY+K G L D+ K F  +  R+   W S+I+ + ++ +  +AL L
Sbjct: 351 LGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALIL 410

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           Y  MK  G+ P D T  S+L ACS +  +  G + +   T  H         + +  M  
Sbjct: 411 YRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ-VHGHTIKHGFGLEVPIGSALSTMYS 469

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           + G L +      R P K DV+ W A++   S +G  +      E++ LA+   P     
Sbjct: 470 KCGSLEDGNLVFRRTPNK-DVVSWNAMISGLSHNGQGDEALELFEEM-LAEGMEPDDVTF 527

Query: 567 MANIYSCSGR 576
           +  I +CS +
Sbjct: 528 VNIISACSHK 537



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 203/382 (53%), Gaps = 17/382 (4%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           +  + +H  +   G    +   N L+  Y KCG  +    +F  +  ++V++W ++I+G 
Sbjct: 31  VAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGY 90

Query: 233 VQNQLYEEG---LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            QN         ++LF +M    I PN+ T      A S LQ+   GRQ H ++ K++  
Sbjct: 91  SQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSF 150

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ---LF 346
            D+ ++++L+ MY K G VED  ++F +  E +  + + ++ G+A  G  EEA++   LF
Sbjct: 151 GDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLF 210

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++  + G + D  + +AVL        +GLG+QIH + IK+       ++N L+ MYSKC
Sbjct: 211 LREKEEGSDSDY-VFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKC 269

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
             L ++ K+F     RNS++W++M+  ++++G   +A++L+  M   G++P++ T + +L
Sbjct: 270 ESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVL 329

Query: 467 HACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +ACS +  + +G +     LK   E H  +  A     +VDM  +AG L +AR   + + 
Sbjct: 330 NACSDICYLEEGKQLHSFLLKLGFERHLFATTA-----LVDMYAKAGCLADARKGFDCLQ 384

Query: 523 VKPDVLVWQALLGACSIHGDSE 544
            + DV +W +L+     + D+E
Sbjct: 385 ER-DVALWTSLISGYVQNSDNE 405



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 178/373 (47%), Gaps = 46/373 (12%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA--LMDMYSKCGSVED 310
           +NP++ T L  +   S  + L  GR +HG + +    +  CI+ A  L++ Y+KCG +  
Sbjct: 10  LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTG--ASTCIQHANVLVNFYAKCGKLAK 67

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEA---MQLFVKMVKAGIEIDPNMVSAVLGV 367
           A  IF      D VS   ++ G++QNG    +   MQLF +M     +I PN  + + G+
Sbjct: 68  AHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ--DILPNAYT-LAGI 124

Query: 368 FGVDTSL---GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           F  ++SL    +G+Q H+L++K     + +V+  L+ MY K G +ED +KVF+ M  RN+
Sbjct: 125 FKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNT 184

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF-----LSLLHACSHVGLVNKGM 479
            +W++M++ +A  G   +A++++     E  E +D  +     LS L A  +VGL  +  
Sbjct: 185 YTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQ-- 242

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
             +  +T  + +         +V M  +   L EA    +    + + + W A++   S 
Sbjct: 243 --IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDR-NSITWSAMVTGYSQ 299

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           +G+S        ++F A    P+ Y ++  + +CS                       I 
Sbjct: 300 NGESLEAVKLFSRMFSAGI-KPSEYTIVGVLNACS----------------------DIC 336

Query: 600 WIEIEKQVHSFVV 612
           ++E  KQ+HSF++
Sbjct: 337 YLEEGKQLHSFLL 349



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 11/127 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ N   ++ +L   +      LG  +H   IK     +      VP    I ++L + Y
Sbjct: 419 IIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLE------VP----IGSALSTMY 468

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +   +F   P +D VSWN M+SG   NG+ D     F+  L  G  + D  +F
Sbjct: 469 SKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGM-EPDDVTF 527

Query: 160 TIILSAC 166
             I+SAC
Sbjct: 528 VNIISAC 534


>gi|296088347|emb|CBI36792.3| unnamed protein product [Vitis vinifera]
          Length = 238

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 204/230 (88%)

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RNSVSWNSMIAAFARHGNG +AL+LYEEM+LEGV PTDVTFLSLLHAC+HVGLV KG
Sbjct: 1   MPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKG 60

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           M FL+SM + + I PR EHYACVVDM+GRAGLL EA+ FIER+P KP +LVWQALLGACS
Sbjct: 61  MGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACS 120

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           IHG+SEMGKYAA +LFL  P+SPAPYIL+ANIYS  G+WKERA+ IK+MK+MGV KETGI
Sbjct: 121 IHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGI 180

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SWIEIEKQ+HSFVV+D+MHP A+ I+GVL EL +LM+DEGYVP+KRFIL+
Sbjct: 181 SWIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYVPDKRFILY 230


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 334/559 (59%), Gaps = 3/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y +  +M  A  +F +M   DT+SWN+M+SGF++NG +     F+    + G
Sbjct: 355 VANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAG 414

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   I++A  RS  +L    IH      G + ++ VGN+L+  Y K  S    
Sbjct: 415 -QKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYM 473

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F +M  ++V++WT +I+G  QN  +   L+LF ++ L  I+ + +   S ++ACSGL
Sbjct: 474 DCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGL 533

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + +   ++IH  + +  L SDL +++ ++D+Y +CG+V+ A ++FE  E  D VS T ++
Sbjct: 534 KLISSVKEIHSYIIRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMI 592

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             +  NG   EA++LF  M + G+E D   + ++L      ++L  GK+IH  +I+  F 
Sbjct: 593 SCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFV 652

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               + + L++MY++CG LE S  VF+ +  ++ V W SMI A+  HG G  A++L+  M
Sbjct: 653 LEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRM 712

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + E + P  + F+++L+ACSH GL+N+G  FL+SM   +++ P  EHY C+VD++GRA  
Sbjct: 713 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANH 772

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  F++ M V+P   VW ALLGAC IH + E+G+ AA+KL    P++P  Y+L++N+
Sbjct: 773 LEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNV 832

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+   RWK+  +   RMK  G+ K  G SWIE+  +VH+F+  DK HPQ+  I+  L+++
Sbjct: 833 YAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQI 892

Query: 631 LRLMIDE-GYVPNKRFILH 648
              +  E GYV   +F+LH
Sbjct: 893 TEKLAKEGGYVAQTKFVLH 911



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 254/514 (49%), Gaps = 27/514 (5%)

Query: 33  TSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIW 92
             S S+  LD     S +L +   +     G  +HA  I +   F         N+  + 
Sbjct: 105 NQSPSQFSLDE--AYSSVLELCGSKKALSEGQQVHAHMITSNALF---------NSVFLS 153

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
             L+  Y KC  + +A KLFD MP +   +WN M+  ++ NGE  +G     R + +   
Sbjct: 154 TRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGE-PLGSLELYREMRVSGI 212

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            LD  +F  IL AC   +       +H L    GY   V V N+++  Y KC   +  R+
Sbjct: 213 PLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 272

Query: 213 VFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +F  M  + +V++W ++IS    N    E L+LF +M    + PN+ T+++++ AC    
Sbjct: 273 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSS 332

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            + +G  IH  + K +   ++ + +AL+ MY++ G + +A  IF   ++ D +S   +L 
Sbjct: 333 FIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLS 392

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           GF QNG   EA+Q + +M  AG + D   V +++       +   G QIH+  +K+   S
Sbjct: 393 GFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDS 452

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  V N L++MY+K   ++    +F +M  ++ VSW ++IA  A++G+  +ALEL+ E++
Sbjct: 453 DLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ 512

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVG 506
           LEG++   +   S+L ACS       G++ + S+ E+H    R      V     VD+ G
Sbjct: 513 LEGIDLDVMMISSILLACS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYG 565

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             G +  A    E +  K DV+ W +++ +C +H
Sbjct: 566 ECGNVDYAARMFELIEFK-DVVSWTSMI-SCYVH 597



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 26/253 (10%)

Query: 335 QNGFEEEAMQ----LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + G   EA Q    LF     +   +D    S+VL + G   +L  G+Q+H+ +I S+  
Sbjct: 88  KRGSVNEAFQSLTDLFANQSPSQFSLD-EAYSSVLELCGSKKALSEGQQVHAHMITSNAL 146

Query: 391 SNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            N  F++  L+ MY KCG L D+ K+F  M  +   +WN+MI A+  +G    +LELY E
Sbjct: 147 FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYRE 206

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VD 503
           M++ G+     TF  +L AC   GL+       +   EVH ++ +  + + V      V 
Sbjct: 207 MRVSGIPLDACTFPCILKAC---GLLKD----RRCGAEVHGLAIKEGYVSIVFVANSIVG 259

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPA 562
           M  +   L  AR   +RMP K DV+ W +++ A S +G S      A +LF   Q  S A
Sbjct: 260 MYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQS----IEALRLFGEMQKASLA 315

Query: 563 P--YILMANIYSC 573
           P  Y  +A + +C
Sbjct: 316 PNTYTFVAALQAC 328



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 128/270 (47%), Gaps = 5/270 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N ++  Y +C  +  A ++F+ +  +D VSW +M+S ++ NG  +     F    E 
Sbjct: 555 VLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKET 614

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  S   ILSA          K IH  +   G+  E ++ + L+  Y +CG+   
Sbjct: 615 GV-EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 673

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF  +R ++++ WT++I+    +      + LF +M    I P+ + +++ + ACS 
Sbjct: 674 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 733

Query: 270 LQALCEGRQ-IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              + EGR+ +  + ++  L+        L+D+  +   +E+A+Q  +  E      +  
Sbjct: 734 SGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 793

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
            L+G  Q    +E  ++  + +   +E+DP
Sbjct: 794 ALLGACQIHSNKELGEIAAQKL---LEMDP 820


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 328/557 (58%), Gaps = 4/557 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC+++ +A ++F  + +R++V+WN ++SG+ + G+    F      +EL   
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLD-CMELEGV 197

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D  +F  +L+  D  +L  ++  +H  +   G   + TV NA+IT+Y +CGS     +
Sbjct: 198 EIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAER 257

Query: 213 VF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           VF G +  R+++TW ++++  + N   EE  +LF++M +    P+  TY S + A     
Sbjct: 258 VFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGS 317

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTVI 329
              +G+ +HG++ K  L+  + I ++L+ MY  S   S+++A  IFE  E  D VS   I
Sbjct: 318 HQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSI 377

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L GF+Q+G  E+A++ F  M    + ID    SAVL       +L LG+Q+H L++KS F
Sbjct: 378 LTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGF 437

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N FV + LI MYSKCG +ED+ K F      +S++WNS+I  +A+HG G  AL+L+  
Sbjct: 438 EPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFL 497

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK   V+   +TF+++L ACSH+GLV +G  FLKSM   + I PR EHYAC++D++GRAG
Sbjct: 498 MKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAG 557

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA++ IE MP +PD +VW+ LLGAC   GD E+    A  L   +P+    Y+L+++
Sbjct: 558 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSS 617

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           ++    RW E+A   + MKE GV K  G SWIE++ +V SF  +D+ HP  + I+  L E
Sbjct: 618 MFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGE 677

Query: 630 LLRLMIDEGYVPNKRFI 646
           L+  +    YV N   +
Sbjct: 678 LMEEIRRLDYVANSEIM 694



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 229/470 (48%), Gaps = 17/470 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++S Y KC ++R A K+F +   RD VSWNTM++GF+  G F+    F K     GF 
Sbjct: 38  NNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGF- 96

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            +D  SF  IL          V + +H ++   GYE  V  G+AL+  Y KC       +
Sbjct: 97  AVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFE 156

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + +RN +TW A+ISG  Q         L   M L  +  +  T+   +        
Sbjct: 157 VFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDL 216

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA-EELDGVSMTVILV 331
                Q+H  + K  L SD  + +A++  YS+CGS+EDA ++F+ A E  D V+   +L 
Sbjct: 217 HKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLA 276

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +  N  EEEA QLF++M   G E D    ++V+      +  G GK +H L+IK     
Sbjct: 277 AYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEF 336

Query: 392 NPFVNNGLINMY--SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
              ++N LI MY  S    +++++ +F  +  ++ VSWNS++  F++ G    AL+ +E 
Sbjct: 337 LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFEN 396

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMV 505
           M+ + V      F ++L +CS +  +  G +     LKS  E     P     + ++ M 
Sbjct: 397 MRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFE-----PNGFVASSLIFMY 451

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            + G++ +AR   +  P K   + W +L+   + HG    GK A +  FL
Sbjct: 452 SKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHG---RGKIALDLFFL 497



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 208/435 (47%), Gaps = 50/435 (11%)

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            + L Q+SFT +  A           + HCL    G    +   N +I+ Y KCG     
Sbjct: 4   LHSLSQSSFTALYRA----------SVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIA 53

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF--VKMHLGLINPNSLTYLSSVMACS 268
            K+FGE   R+ ++W  +I+G V    +E  L+    +K +   ++  S   +   +AC 
Sbjct: 54  SKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACV 113

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   +  G+Q+H ++ K+  + ++   SAL+DMY+KC  VEDA+++F+     + V+   
Sbjct: 114 GYVEV--GQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNA 171

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+AQ G    A  L   M   G+EID    + +L +        L  Q+H+ I+K  
Sbjct: 172 LISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHG 231

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVF-SRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             S+  V N +I  YS+CG +ED+ +VF   +  R+ V+WNSM+AA+  +    +A +L+
Sbjct: 232 LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLF 291

Query: 448 EEMKLEGVEPTDVTFLSLLHAC---SHVG--------LVNKGMEFL-------------- 482
            EM++ G EP   T+ S++ A    SH G        ++ +G+EFL              
Sbjct: 292 LEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKS 351

Query: 483 --KSMTEVHRISPRAEH-----YACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQA 532
             KSM E   I    E+     +  ++    ++GL  +A  F E M    V  D   + A
Sbjct: 352 HSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSA 411

Query: 533 LLGACSIHGDSEMGK 547
           +L +CS     ++G+
Sbjct: 412 VLRSCSDLATLQLGQ 426



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 167/351 (47%), Gaps = 42/351 (11%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WNS+L+ YL  +Q   A +LF +M +                               L
Sbjct: 269 VTWNSMLAAYLVNNQEEEAFQLFLEMQV-------------------------------L 297

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS- 208
           GF + D  ++T ++SA          K +H LV   G E  V + N+LI  Y K  S S 
Sbjct: 298 GF-EPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSM 356

Query: 209 -SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                +F  +  ++ ++W ++++G  Q+ L E+ LK F  M    +  +   + + + +C
Sbjct: 357 DEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSC 416

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L  L  G+Q+H ++ K   + +  + S+L+ MYSKCG +EDA + F+   +   ++  
Sbjct: 417 SDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWN 476

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--I 385
            ++ G+AQ+G  + A+ LF  M    +++D     AVL      + +GL ++  S +  +
Sbjct: 477 SLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTAC---SHIGLVEEGWSFLKSM 533

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAA 433
           +SD+   P + +   +I++  + G L+++  +   M    +++ W +++ A
Sbjct: 534 ESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGA 584


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 338/609 (55%), Gaps = 19/609 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + +LS  A +G   LG  +HA  +K          +   ++  + NSL++ Y KC
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVK----------FGCRSSVFVCNSLMNMYAKC 249

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGF-LRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A  +F+ M  RD VSWNT+++G  L   E +    F +    +G  ++ Q+++  
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG--KMTQSTYAT 307

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG-EMRVR 220
           ++  C   +   +++ +H  V   G+     V  AL  +Y KCG  +    +F      R
Sbjct: 308 VIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           NV++WTA+ISG +QN      + LF +M    + PN  TY  S M  + L  L    QIH
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY--SAMLKASLSIL--PPQIH 423

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             + K   Q    + +AL+  YSK GS EDA  IF+  E+ D V+ + +L   AQ G  E
Sbjct: 424 AQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNNGL 399
            A  LF KM   GI+ +   +S+V+      ++ +  G+Q H++ IK  +     V++ L
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MYS+ G+++ +  VF R   R+ VSWNSMI+ +A+HG   KA+E + +M+  G++   
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VTFL+++  C+H GLV +G ++  SM   H+I+P  EHYAC+VD+  RAG L E  S I 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP     +VW+ LLGAC +H + E+GK++A+KL   +P   + Y+L++NIY+ +G+WKE
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           R +  K M    V KE G SWI+I+ +VHSF+  DK HP +D I+  L  ++  +  +GY
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGY 783

Query: 640 VPNKRFILH 648
            PN  F+LH
Sbjct: 784 SPNTSFVLH 792



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 234/477 (49%), Gaps = 33/477 (6%)

Query: 112 FDDMPMRDT-VSWNTMVSGFLRNG---EFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            D++P RD  V  N ++  + R G   E    F   +R    G   +D A+ + +L AC 
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARR----GGVLVDSATLSCVLKACR 110

Query: 168 RSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                ++ + +HCL   CG++  EV+ G +L+  Y KCGS   G +VF  M  +NV+TWT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++++G    Q++ E + LF +M    I PN  T+ S + A +   AL  G+++H    K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +S + + ++LM+MY+KCG VEDA  +F + E  D VS   ++ G   N  E EA+QLF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +      ++  +  + V+ +      L L +Q+HS ++K  F     V   L + YSKC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 407 GDLEDSIKVFS-RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           G+L D++ +FS     RN VSW ++I+   ++G+   A+ L+  M+ + V P + T+ ++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF-------- 517
           L A          +  L        I    +H    +  VG A LL     F        
Sbjct: 411 LKA---------SLSILPPQIHAQVIKTNYQH----IPSVGTA-LLASYSKFGSTEDALS 456

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           I +M  + DV+ W A+L   +  GD E   Y   K+ + Q   P  + + + I +C+
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI-QGIKPNEFTISSVIDACA 512



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 224/460 (48%), Gaps = 23/460 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SL+  Y+KC  +   +++F+ MP ++ V+W ++++G             F R    G +
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             +  +F  +LSA        + + +H      G    V V N+L+  Y KCG     + 
Sbjct: 199 P-NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R++++W  +++GL  N+   E L+LF +    +      TY + +  C+ L+ 
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTVILV 331
           L   RQ+H  + K        + +AL D YSKCG + DA  IF       + VS T I+ 
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG-LGKQIHSLIIKSDFT 390
           G  QNG    A+ LF +M +  +  +    SA+L       SL  L  QIH+ +IK+++ 
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML-----KASLSILPPQIHAQVIKTNYQ 432

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
             P V   L+  YSK G  ED++ +F  +  ++ V+W++M++  A+ G+   A  L+ +M
Sbjct: 433 HIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKM 492

Query: 451 KLEGVEPTDVTFLSLLHACSHVGL-VNKGMEFLKSMTEVHRISPRAEHY------ACVVD 503
            ++G++P + T  S++ AC+     V++G +F       H IS +  ++      + +V 
Sbjct: 493 AIQGIKPNEFTISSVIDACACPSAGVDQGRQF-------HAISIKYRYHDAICVSSALVS 545

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           M  R G +  A+   ER   + D++ W +++   + HG S
Sbjct: 546 MYSRKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHGYS 584


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 327/639 (51%), Gaps = 74/639 (11%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P+  +N +        WNSLLS Y K  ++ +A  +F  MP RD VSW  MV G  R G 
Sbjct: 91  PYARRNAFT-------WNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGR 143

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           F      F   +  G     Q   T +LS+C  +E   + + +H  V   G    V V N
Sbjct: 144 FWDAVKTFLDMVGEGLAP-SQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVAN 202

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRN-------------------------------VIT 224
           +++  Y KCG + + R VF  M+VR+                               +++
Sbjct: 203 SVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVS 262

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W A+I+G  QN L +  LK F +M     + P+  T  S + AC+ L+ L  G+Q+H  +
Sbjct: 263 WNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYI 322

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQI----------------------------- 314
            +  +     I +AL+  Y+K GSVE A +I                             
Sbjct: 323 LRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQ 382

Query: 315 ----FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
               F+     D ++ T ++VG+ QNG  +EAM+LF  M+++G E + + ++AVL     
Sbjct: 383 AREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACAS 442

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNS 429
              LG GKQIH   I+S    +  V+N +I +Y++ G +  + +VF ++  R  +V+W S
Sbjct: 443 LAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTS 502

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI A A+HG G +A+ L+EEM   GV+P  VT++ +  AC+H G ++KG  + + M   H
Sbjct: 503 MIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEH 562

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I P   HYAC+VD++ RAGLL EA  FI+RMPV PD +VW +LL AC +  ++++ + A
Sbjct: 563 GIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELA 622

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           AEKL    PD+   Y  +AN+YS  GRW + A+  K  K+  V KETG SW  ++ +VH 
Sbjct: 623 AEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHV 682

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F  DD +HPQ D I    AE+   +   G+VP+   +LH
Sbjct: 683 FGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLH 721



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 90/210 (42%), Gaps = 45/210 (21%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD----LEDSIKVFSRM--APRNSVSWNSM 430
           G+ IH+  +K+    + ++ N L++ Y++ G       ++ ++F  +  A RN+ +WNS+
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 431 IAAFA-------------------------------RHGNGFKALELYEEMKLEGVEPTD 459
           ++ +A                               R G  + A++ + +M  EG+ P+ 
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 460 VTFLSLLHACSHV---GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
               ++L +C+     G+  K   F+  +  +    P A     V+ M G+ G    AR+
Sbjct: 164 FMLTNVLSSCAATEARGIGRKVHSFVIKLG-LSSCVPVAN---SVLYMYGKCGDAETARA 219

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             ERM V+ +   W A++   +  G  ++ 
Sbjct: 220 VFERMKVRSES-SWNAMVSLYTHQGRMDLA 248


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 325/561 (57%), Gaps = 4/561 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+  Y+K + + +  ++FD+M +++ VSW ++++G+ +NG  +     F + ++L 
Sbjct: 129 VGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ-MQLE 187

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  +F  +L              +H +V   G +  + VGN+++  Y K    S  
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF  M  RN ++W ++I+G V N L  E  +LF +M L  +      + + +  C+ +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV-SMTVI 329
           + +   +Q+H  + K     DL I++ALM  YSKC  ++DA+++F     +  V S T I
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 330 LVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKS 387
           + G+ QNG  + AM LF +M +  G+E +    S+VL      T S+  GKQ HS  IKS
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 427

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F++   V++ L+ MY+K G++E + +VF R   R+ VSWNSMI+ +A+HG G K+L+++
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 487

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           EEM+ + +E   +TF+ ++ AC+H GLVN+G  +   M + + I P  EHY+C+VD+  R
Sbjct: 488 EEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSR 547

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG+L +A   I +MP      +W+ LL AC +H + ++G+ AAEKL   QP   A Y+L+
Sbjct: 548 AGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLL 607

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+ +G W+ERAK  K M    V KE G SWIE++ +  SF+  D  HPQ+D I+  L
Sbjct: 608 SNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKL 667

Query: 628 AELLRLMIDEGYVPNKRFILH 648
            EL   + D GY P+ +++LH
Sbjct: 668 EELSIRLKDAGYYPDTKYVLH 688



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 235/443 (53%), Gaps = 22/443 (4%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD+ P +     N ++  F RN +       F   L       D +S + +L  C   
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLF-LGLRRSGSPTDGSSLSCVLKVCGCL 105

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
              +V K +HC    CG+ E+V+VG +L+  Y K  S   G +VF EMRV+NV++WT+++
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +G  QN L E+ LKLF +M L  I PN  T+ + +   +   A+ +G Q+H ++ K  L 
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLD 225

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           S + + +++++MYSK   V DA  +F+  E  + VS   ++ GF  NG + EA +LF +M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCG 407
              G+++   + + V+ +      +   KQ+H  +IK  SDF  N  +   L+  YSKC 
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN--IKTALMVAYSKCS 343

Query: 408 DLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSL 465
           +++D+ K+F  M   +N VSW ++I+ + ++G   +A+ L+ +M+  EGVEP + TF S+
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSV 403

Query: 466 LHACSH-VGLVNKGMEFLKSMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARSFI 518
           L+AC+     V +G +F       H  S ++   +  CV    V M  + G +  A    
Sbjct: 404 LNACAAPTASVEQGKQF-------HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVF 456

Query: 519 ERMPVKPDVLVWQALLGACSIHG 541
           +R  V  D++ W +++   + HG
Sbjct: 457 KRQ-VDRDLVSWNSMISGYAQHG 478



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 15/126 (11%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S L + +A       G   H+  IK+             NA  + ++L++ Y K   + +
Sbjct: 402 SVLNACAAPTASVEQGKQFHSCSIKS----------GFSNALCVSSALVTMYAKRGNIES 451

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTIILSA 165
           A ++F     RD VSWN+M+SG+ ++G        F+  RS  L   +LD  +F  ++SA
Sbjct: 452 ANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNL---ELDGITFIGVISA 508

Query: 166 CDRSEL 171
           C  + L
Sbjct: 509 CTHAGL 514


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/565 (37%), Positives = 333/565 (58%), Gaps = 10/565 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N L++ Y KC  + +A ++F  M  +D+VSWN+M++G  +NG F      +K    + 
Sbjct: 351 IGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYK---SMR 407

Query: 151 FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            + +   SFT+I  LS+C   + + + + IH      G +  V+V NAL+T Y + G  +
Sbjct: 408 RHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             RK+F  M   + ++W ++I  L +++    E +  F+         N +T+ S + A 
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSM 326
           S L     G+QIHG+  K  +  +   E+AL+  Y KCG ++   +IF   AE  D V+ 
Sbjct: 528 SSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+  N    +A+ L   M++ G  +D  M + VL  F    +L  G ++H+  ++
Sbjct: 588 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+  V + L++MYSKCG L+ +++ F+ M  RNS SWNSMI+ +ARHG G +AL+L
Sbjct: 648 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 707

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +E MKL+G  P D VTF+ +L ACSH GL+ +G +  +SM++ + ++PR EH++C+ D++
Sbjct: 708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAP 563
           GRAG L +   FIE+MP+KP+VL+W+ +LGAC       +E+GK AAE LF  +P++   
Sbjct: 768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L+ N+Y+  GRW++  KA K+MK+  V KE G SW+ ++  VH FV  DK HP AD I
Sbjct: 828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVI 887

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L EL R M D GYVP   F L+
Sbjct: 888 YKKLKELNRKMRDAGYVPQTGFALY 912



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/459 (30%), Positives = 231/459 (50%), Gaps = 23/459 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ YL+     +A K+FD+MP+R+ VSW  +VSG+ RNGE      F +  ++ G +
Sbjct: 40  NNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIF 99

Query: 153 QLDQASFTIILSACDR--SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-GSSSS 209
             +Q +F  +L AC    S   L  + IH L++   Y  +  V N LI+ Y+KC GS   
Sbjct: 100 S-NQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGY 158

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV-MACS 268
               FG++ V+N ++W ++IS   Q        ++F  M      P   T+ S V  ACS
Sbjct: 159 ALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACS 218

Query: 269 GLQA---LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             +    L E  QI   + K  L +DL + S L+  ++K GS+  A ++F   E  + V+
Sbjct: 219 LTEPDVRLLE--QIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVT 276

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF-----GVDTSLGLGKQI 380
           +  ++VG  +  + EEA +LF+ M  + I++ P     +L  F       +  L  G+++
Sbjct: 277 LNGLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREV 335

Query: 381 HSLIIKS---DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           H  +I +   DF     + NGL+NMY+KCG + D+ +VF  M  ++SVSWNSMI    ++
Sbjct: 336 HGHVITTGLVDFMVG--IGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQN 393

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G   +A+E Y+ M+   + P   T +S L +C+ +     G +      ++  I      
Sbjct: 394 GCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG-IDLNVSV 452

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              ++ +    G L E R     MP + D + W +++GA
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 242/500 (48%), Gaps = 28/500 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + + L+S + K   +  A K+F+ M  R+ V+ N ++ G +R    +     F     + 
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM- 303

Query: 151 FYQLDQASFTIILSACDRSELSLVSKM-------IHCLVYLCGYEE-EVTVGNALITSYF 202
              +   S+ I+LS+    E SL  ++       +H  V   G  +  V +GN L+  Y 
Sbjct: 304 -IDVSPESYVILLSSF--PEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCGS +  R+VF  M  ++ ++W ++I+GL QN  + E ++ +  M    I P S T +S
Sbjct: 361 KCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLIS 420

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           S+ +C+ L+    G+QIHG   KL +  ++ + +ALM +Y++ G + +  +IF    E D
Sbjct: 421 SLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHD 480

Query: 323 GVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            VS   I+   A++     EA+  F+   +AG +++    S+VL      +   LGKQIH
Sbjct: 481 QVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNG 440
            L +K++        N LI  Y KCG+++   K+FSRMA  R++V+WNSMI+ +  +   
Sbjct: 541 GLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELL 600

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHY 498
            KAL+L   M   G       + ++L A + V  + +GM       EVH  S RA  E  
Sbjct: 601 AKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGM-------EVHACSVRACLESD 653

Query: 499 ACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
             V    VDM  + G L  A  F   MPV+ +   W +++   + HG  E      E + 
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGYARHGQGEEALKLFETMK 712

Query: 555 LAQPDSPAPYILMANIYSCS 574
           L     P     +  + +CS
Sbjct: 713 LDGQTPPDHVTFVGVLSACS 732



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 208/441 (47%), Gaps = 21/441 (4%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            ++  H  +Y    +++V + N LI +Y + G S S RKVF EM +RN ++W  ++SG  
Sbjct: 19  AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYS 78

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSD 291
           +N  ++E L     M    I  N   ++S + AC   G   +  GRQIHG+++KL+   D
Sbjct: 79  RNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVD 138

Query: 292 LCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
             + + L+ MY KC GSV  A   F   E  + VS   I+  ++Q G +  A ++F  M 
Sbjct: 139 AVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQ 198

Query: 351 KAGIEIDPNMVSAVLGVFG--VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
             G         +++       +  + L +QI   I KS   ++ FV +GL++ ++K G 
Sbjct: 199 YDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGS 258

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L  + KVF++M  RN+V+ N ++    R   G +A +L+ +M    ++ +  +++ LL +
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSS 317

Query: 469 ------CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
                    VGL  KG E    +     +         +V+M  + G + +AR     M 
Sbjct: 318 FPEYSLAEEVGL-KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT 376

Query: 523 VKPDVLVWQALLGACSIHGD--SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG-RWKE 579
            K D + W +++     +G     + +Y   K        P  + L++++ SC+  +W +
Sbjct: 377 DK-DSVSWNSMITGLDQNGCFIEAVERY---KSMRRHDILPGSFTLISSLSSCASLKWAK 432

Query: 580 RAKAIK-RMKEMGVDKETGIS 599
             + I     ++G+D    +S
Sbjct: 433 LGQQIHGESLKLGIDLNVSVS 453



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 105/218 (48%), Gaps = 15/218 (6%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDT 120
           LG  +H   +K           N+ +     N+L++ Y KC +M    K+F  M   RD 
Sbjct: 535 LGKQIHGLALKN----------NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDN 584

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA-CDRSELSLVSKMIH 179
           V+WN+M+SG++ N             L+ G  +LD   +  +LSA    + L    ++  
Sbjct: 585 VTWNSMISGYIHNELLAKALDLVWFMLQTG-QRLDSFMYATVLSAFASVATLERGMEVHA 643

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           C V  C  E +V VG+AL+  Y KCG      + F  M VRN  +W ++ISG  ++   E
Sbjct: 644 CSVRAC-LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGE 702

Query: 240 EGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEG 276
           E LKLF  M L G   P+ +T++  + ACS    L EG
Sbjct: 703 EALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%)

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
           G  +  HS + K+    + ++ N LIN Y + GD   + KVF  M  RN VSW  +++ +
Sbjct: 18  GAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGY 77

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           +R+G   +AL    +M  EG+      F+S+L AC  +G V
Sbjct: 78  SRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 332/568 (58%), Gaps = 8/568 (1%)

Query: 81  NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF 140
           N YN    TV+ NSL+SFY    ++R A KLFD++  RD +SWN+M+SG+++NG  D G 
Sbjct: 283 NSYN----TVV-NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGI 337

Query: 141 GFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL-VYLCGYEEEVTVGNALIT 199
             F + L  G   +D A+   +  AC      L+ K++H   +     + EV   N L+ 
Sbjct: 338 EIFIKMLVFGV-DIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y KCG  +S  +VF  M  + V++WT++I+G V+  L +  +KLF +M    + P+   
Sbjct: 397 MYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYA 456

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S + AC+    L  G+ +H  + +  L+++  + +AL DMY+KCGS++DA  +F   +
Sbjct: 457 VTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK 516

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           + D +S   ++ G+ +N    EA+ LF +M +   + D   V+ +L       +L  G++
Sbjct: 517 KKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGRE 575

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH   +++ ++ + +V N +++MY KCG L  +  +F  +  ++ VSW  MIA +  HG 
Sbjct: 576 IHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGY 635

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G +A+  + +M++ G+EP +V+F+S+L+ACSH GL+++G +    M +  +I P  EHYA
Sbjct: 636 GSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYA 695

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++ R G L++A  FI+ MP+KPD  +W ALL  C IH D ++ +  AE++F  +P+
Sbjct: 696 CMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPE 755

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           +   Y+L+ANIY+ + +W+E  K  K++ + G+ K  G SWIEI+ +++ FV  D   PQ
Sbjct: 756 NTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQ 815

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           A  I  +L  L   M +EGY P   + L
Sbjct: 816 AKKIELLLKRLRSKMKEEGYSPKTAYAL 843



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 265/492 (53%), Gaps = 28/492 (5%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y+KC  ++    +FD +       WN M+S +  +G +      FK+ LELG  + 
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI-KP 249

Query: 155 DQASFTIIL---SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           +  +F+ IL   +A  R E     + +H L+   G+    TV N+LI+ YF        +
Sbjct: 250 NSYTFSSILKCFAAVARVE---EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ 306

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           K+F E+  R+VI+W ++ISG V+N L + G+++F+KM +  ++ +  T ++  +AC+ + 
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366

Query: 272 ALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            L  G+ +H    K A L  ++   + L+DMYSKCG +  A ++FE  +E   VS T ++
Sbjct: 367 TLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMI 426

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+ + G  + A++LF +M   G+  D   V+++L    ++ +L  GK +H  I +++  
Sbjct: 427 TGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLE 486

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +N FV+N L +MY+KCG ++D+  VFS M  ++ +SWN+MI  + ++    +AL L+ EM
Sbjct: 487 TNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM 546

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYA--CVVDM 504
           + E  +P   T   +L AC+ +  ++KG        E+H  + R     + Y    VVDM
Sbjct: 547 QRES-KPDGTTVACILPACASLAALDKG-------REIHGYALRNGYSEDKYVTNAVVDM 598

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPA 562
             + GLL+ ARS  + +P K D++ W  ++    +H  G   +  +   ++   +PD  +
Sbjct: 599 YVKCGLLVLARSLFDMIPNK-DLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVS 657

Query: 563 PYILMANIYSCS 574
               ++ +Y+CS
Sbjct: 658 ---FISILYACS 666



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 194/387 (50%), Gaps = 7/387 (1%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  ++  IL  C   +     + +  ++   G   +  +G  L+  Y KCG    GR 
Sbjct: 147 NFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRM 206

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC-SGLQ 271
           VF ++    +  W  +IS    +  Y E + LF +M    I PNS T+ SS++ C + + 
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF-SSILKCFAAVA 265

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            + EGRQ+HG++ KL   S   + ++L+  Y     V  A ++F+   + D +S   ++ 
Sbjct: 266 RVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMIS 325

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDF 389
           G+ +NG ++  +++F+KM+  G++ID   MV+  +    + T L LGK +HS  IK +  
Sbjct: 326 GYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL-LGKVLHSYSIKAATL 384

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                 NN L++MYSKCGDL  +I+VF RM  +  VSW SMI  + R G    A++L++E
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  GV P      S+L+AC+  G +  G + +      + +   +     + DM  + G
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCG 503

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGA 536
            + +A      M  K DV+ W  ++G 
Sbjct: 504 SMKDAHDVFSHMK-KKDVISWNTMIGG 529


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 323/561 (57%), Gaps = 9/561 (1%)

Query: 94  SLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SL+  ++K +    NA K+FD M   + V+W  M++  ++ G       FF   +  GF 
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF- 265

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSS 209
           + D+ + + + SAC   E   + K +H      G  ++V    +L+  Y KC   GS   
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDD 323

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            RKVF  M   +V++WTA+I+G ++N  L  E + LF +M   G + PN  T+ S+  AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L     G+Q+ G  +K  L S+  + ++++ M+ K   +EDA + FE   E + VS  
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             L G  +N   E+A +L  ++ +  + +     +++L       S+  G+QIHS ++K 
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL 503

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + N  V N LI+MYSKCG ++ + +VF+ M  RN +SW SMI  FA+HG   + LE +
Sbjct: 504 GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETF 563

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M  EGV+P +VT++++L ACSHVGLV++G     SM E H+I P+ EHYAC+VD++ R
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL +A  FI  MP + DVLVW+  LGAC +H ++E+GK AA K+    P+ PA YI +
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+C+G+W+E  +  ++MKE  + KE G SWIE+  ++H F V D  HP A  I+  L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVP+   +LH
Sbjct: 744 DRLITEIKRCGYVPDTDLVLH 764



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 246/510 (48%), Gaps = 31/510 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V  S LL    +   F LG  +HA  I+          +++   +V++NSL+S Y K   
Sbjct: 63  VTFSSLLKSCIRARDFRLGKLVHARLIE----------FDIEPDSVLYNSLISLYSKSGD 112

Query: 105 MRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
              A  +F+ M     RD VSW+ M++ +  NG        F   LELG    D   +T 
Sbjct: 113 SAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC-YTA 171

Query: 162 ILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS-SSGRKVFGEMRV 219
           ++ AC  S+   V ++    +   G +E +V VG +LI  + K  +S  +  KVF +M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            NV+TWT +I+  +Q     E ++ F+ M L     +  T  S   AC+ L+ L  G+Q+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 280 HGILWKLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           H    +  L  D  +E +L+DMY+KC   GSV+D  ++F+  E+   +S T ++ G+ +N
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 337 -GFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
                EA+ LF +M+  G  ++PN    S+     G  +   +GKQ+     K    SN 
Sbjct: 350 CNLATEAINLFSEMITQG-HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N +I+M+ K   +ED+ + F  ++ +N VS+N+ +    R+ N  +A +L  E+   
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITER 468

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLL 511
            +  +  TF SLL   ++VG + KG +     ++V ++        C  ++ M  + G +
Sbjct: 469 ELGVSAFTFASLLSGVANVGSIRKGEQI---HSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHG 541
             A      M  + +V+ W +++   + HG
Sbjct: 526 DTASRVFNFMENR-NVISWTSMITGFAKHG 554



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 187/344 (54%), Gaps = 14/344 (4%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +D  +F+ +L +C R+    + K++H  +     E +  + N+LI+ Y K G S+ 
Sbjct: 56  GIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 210 GRKVFGEMR---VRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVM 265
              VF  MR    R+V++W+A+++    N    + +K+FV+ + LGL+ PN   Y + + 
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIR 174

Query: 266 ACSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDG 323
           ACS    +  GR   G L K    +SD+C+  +L+DM+ K   S E+A+++F+   EL+ 
Sbjct: 175 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+ T+++    Q GF  EA++ F+ MV +G E D   +S+V        +L LGKQ+HS 
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW 294

Query: 384 IIKSDFTSNPFVNNGLINMYSKC---GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN- 439
            I+S    +  V   L++MY+KC   G ++D  KVF RM   + +SW ++I  + ++ N 
Sbjct: 295 AIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNL 352

Query: 440 GFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFL 482
             +A+ L+ EM  +G VEP   TF S   AC ++     G + L
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 41/338 (12%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NS++S ++K D+M +A + F+ +  ++ VS+NT + G  RN  F+  F       E+ 
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLS---EIT 466

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             +L  ++FT   +LS           + IH  V   G      V NALI+ Y KCGS  
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +  +VF  M  RNVI+WT++I+G  ++      L+ F +M    + PN +TY++ + ACS
Sbjct: 527 TASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586

Query: 269 GLQALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            +  + EG R  + +     ++  +   + ++D+  + G + DA   FEF   +   +  
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA---FEFINTMPFQADV 643

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           ++   F                               LG   V ++  LGK     I++ 
Sbjct: 644 LVWRTF-------------------------------LGACRVHSNTELGKLAARKILEL 672

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
           D  + P     L N+Y+  G  E+S ++  +M  RN V
Sbjct: 673 D-PNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLV 709



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS  A  G    G  +H+  +K            +     + N+L+S Y KC  +  A 
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVK----------LGLSCNQPVCNALISMYSKCGSIDTAS 529

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++F+ M  R+ +SW +M++GF ++G        F + +E G  + ++ ++  ILSAC  S
Sbjct: 530 RVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV-KPNEVTYVAILSAC--S 586

Query: 170 ELSLVSK 176
            + LVS+
Sbjct: 587 HVGLVSE 593


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 338/609 (55%), Gaps = 19/609 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + +LS  A +G   LG  +HA  +K          +   ++  + NSL++ Y KC
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVK----------FGCRSSVFVCNSLMNMYAKC 249

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGF-LRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A  +F+ M  RD VSWNT+++G  L   E +    F +    +G  ++ Q+++  
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMG--KMTQSTYAT 307

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG-EMRVR 220
           ++  C   +   +++ +H  V   G+     V  AL  +Y KCG  +    +F      R
Sbjct: 308 VIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSR 367

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           NV++WTA+ISG +QN      + LF +M    + PN  TY  S M  + L  L    QIH
Sbjct: 368 NVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTY--SAMLKASLSIL--PPQIH 423

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             + K   Q    + +AL+  YSK GS EDA  IF+  E+ D V+ + +L   AQ G  E
Sbjct: 424 AQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNNGL 399
            A  LF KM   GI+ +   +S+V+      ++ +  G+Q H++ IK  +     V++ L
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MYS+ G+++ +  VF R   R+ VSWNSMI+ +A+HG   KA+E + +M+  G++   
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VTFL+++  C+H GLV +G ++  SM   H+I+P  EHYAC+VD+  RAG L E  S I 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP     +VW+ LLGAC +H + E+GK++A+KL   +P   + Y+L++NIY+ +G+WKE
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           R +  K M    V KE G SWI+I+ +VHSF+  DK HP +D I+  L  ++  +  +GY
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGY 783

Query: 640 VPNKRFILH 648
            PN  F+LH
Sbjct: 784 SPNTSFVLH 792



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 234/477 (49%), Gaps = 33/477 (6%)

Query: 112 FDDMPMRDT-VSWNTMVSGFLRNG---EFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            D++P RD  V  N ++  + R G   E    F   +R    G   +D A+ + +L AC 
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARR----GGVLVDSATLSCVLKACR 110

Query: 168 RSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                ++ + +HCL   CG++  EV+ G +L+  Y KCGS   G +VF  M  +NV+TWT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++++G    Q++ E + LF +M    I PN  T+ S + A +   AL  G+++H    K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +S + + ++LM+MY+KCG VEDA  +F + E  D VS   ++ G   N  E EA+QLF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +      ++  +  + V+ +      L L +Q+HS ++K  F     V   L + YSKC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 407 GDLEDSIKVFS-RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           G+L D++ +FS     RN VSW ++I+   ++G+   A+ L+  M+ + V P + T+ ++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF-------- 517
           L A          +  L        I    +H    +  VG A LL     F        
Sbjct: 411 LKA---------SLSILPPQIHAQVIKTNYQH----IPFVGTA-LLASYSKFGSTEDALS 456

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           I +M  + DV+ W A+L   +  GD E   Y   K+ + Q   P  + + + I +C+
Sbjct: 457 IFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAI-QGIKPNEFTISSVIDACA 512



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 225/460 (48%), Gaps = 23/460 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SL+  Y+KC  +   +++F+ MP ++ V+W ++++G             F R    G +
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             +  +F  +LSA        + + +H      G    V V N+L+  Y KCG     + 
Sbjct: 199 P-NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R++++W  +++GL  N+   E L+LF +    +      TY + +  C+ L+ 
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTVILV 331
           L   RQ+H  + K        + +AL D YSKCG + DA  IF       + VS T I+ 
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG-LGKQIHSLIIKSDFT 390
           G  QNG    A+ LF +M +  +  +    SA+L       SL  L  QIH+ +IK+++ 
Sbjct: 378 GCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML-----KASLSILPPQIHAQVIKTNYQ 432

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
             PFV   L+  YSK G  ED++ +F  +  ++ V+W++M++  A+ G+   A  L+ +M
Sbjct: 433 HIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKM 492

Query: 451 KLEGVEPTDVTFLSLLHACSHVGL-VNKGMEFLKSMTEVHRISPRAEHY------ACVVD 503
            ++G++P + T  S++ AC+     V++G +F       H IS +  ++      + +V 
Sbjct: 493 AIQGIKPNEFTISSVIDACACPSAGVDQGRQF-------HAISIKYRYHDAICVSSALVS 545

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           M  R G +  A+   ER   + D++ W +++   + HG S
Sbjct: 546 MYSRKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHGYS 584


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 322/607 (53%), Gaps = 13/607 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V  + +LS+ A E    LG  LH   +      D+           + N+LL+ Y KC
Sbjct: 158 NSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSP----------VANTLLAMYSKC 207

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++ A KLFD +P  D VSWN ++SG+++NG        F+  +  G  + D  +F   
Sbjct: 208 QCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGI-KPDSITFASF 266

Query: 163 LSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           L  C    LSL   K IH  +       +V + +ALI  YFKC      +K   +    +
Sbjct: 267 LP-CVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFD 325

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            +  T +ISG V N   +E L+ F  +    + P S+T+ S   A +GL AL  G+++HG
Sbjct: 326 TVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHG 385

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K  L     + SA++DMY+KCG ++ A ++F    E D +    ++   +QNG   E
Sbjct: 386 SIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGE 445

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +M   G   D   +S  L       +L  GK+IH L+IK    S+ +  + LI+
Sbjct: 446 AINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLID 505

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG+L  S +VF RM  +N VSWNS+I+A+  HG+  + L L+ EM   G++P  VT
Sbjct: 506 MYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVT 565

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL ++ AC H G V++G+ +   MTE + I  R EHYACV DM GRAG L EA   I  M
Sbjct: 566 FLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSM 625

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  PD  VW  LLGAC IHG+ E+ + A++ LF   P +   Y+L+AN+ + +G+W++  
Sbjct: 626 PFPPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVL 685

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K    MKE GV K  G SWIE+    H FV  D  HP    I+ VL  LL  +  EGYVP
Sbjct: 686 KVRSIMKERGVRKVPGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVP 745

Query: 642 NKRFILH 648
                +H
Sbjct: 746 QLYLPMH 752



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 250/467 (53%), Gaps = 13/467 (2%)

Query: 81  NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF 140
           N+  +     + +SL+  Y +   + +A  LFD++P +D+V WN M++G+++NG+     
Sbjct: 85  NLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAI 144

Query: 141 GFFKRSLELGFYQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
             F   LE+   ++  +  +F  +LS C    +  +   +H +   CG E +  V N L+
Sbjct: 145 KIF---LEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLL 201

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y KC    + RK+F  +   ++++W  +ISG VQN L  E   LF  M    I P+S+
Sbjct: 202 AMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSI 261

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T+ S +   + L +L   ++IHG + + A+  D+ ++SAL+D+Y KC  VE A +    +
Sbjct: 262 TFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQS 321

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D V  T ++ G+  NG  +EA++ F  +V+  ++      S++   F    +L LGK
Sbjct: 322 SSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGK 381

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           ++H  IIK+       V + +++MY+KCG L+ + +VF+R+  ++++ WNSMI + +++G
Sbjct: 382 ELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNG 441

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEH 497
              +A+ L+ +M +EG     V+    L AC+++  ++ G E    M +     P R++ 
Sbjct: 442 RPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK----GPLRSDL 497

Query: 498 YA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           YA   ++DM  + G L  +R   +RM  K +V  W +++ A   HGD
Sbjct: 498 YAESSLIDMYAKCGNLNFSRRVFDRMQEKNEV-SWNSIISAYGNHGD 543



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/443 (28%), Positives = 231/443 (52%), Gaps = 3/443 (0%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y++   +++A  LF  + +  T +WN M+ GF   G+F+    F+ + L  G    D+ +
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGV-SPDKYT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F  ++ AC   +   + K++H  V L G +E+V VG++LI  Y + G  S  + +F  + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            ++ + W  +++G V+N      +K+F++M    I PNS+T+   +  C+    L  G Q
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HGI     L+ D  + + L+ MYSKC  ++ A ++F+   + D VS   I+ G+ QNG 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             EA  LF  M+ AGI+ D    ++ L       SL   K+IH  II+     + F+ + 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI++Y KC D+E + K   + +  ++V   +MI+ +  +G   +ALE +  +  E ++PT
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPT 360

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VTF S+  A + +  +N G E   S+ +  ++  +    + ++DM  + G L  A    
Sbjct: 361 SVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVF 419

Query: 519 ERMPVKPDVLVWQALLGACSIHG 541
            R+  K D + W +++ +CS +G
Sbjct: 420 NRITEK-DAICWNSMITSCSQNG 441



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 2/142 (1%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY + G L+D+  +F  +    + +WN MI  F   G    AL  Y +M   GV P   T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F  ++ AC  +  V  G + +     +  +       + ++ +    G L +A+   + +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 522 PVKPDVLVWQALLGACSIHGDS 543
           P K  VL W  +L     +GDS
Sbjct: 120 PQKDSVL-WNVMLNGYVKNGDS 140


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 323/561 (57%), Gaps = 9/561 (1%)

Query: 94  SLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SL+  ++K +    NA K+FD M   + V+W  M++  ++ G       FF   +  GF 
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF- 265

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSS 209
           + D+ + + + SAC   E   + K +H      G  ++V    +L+  Y KC   GS   
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDD 323

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            RKVF  M   +V++WTA+I+G ++N  L  E + LF +M   G + PN  T+ S+  AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L     G+Q+ G  +K  L S+  + ++++ M+ K   +EDA + FE   E + VS  
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             L G  +N   E+A +L  ++ +  + +     +++L       S+  G+QIHS ++K 
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL 503

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + N  V N LI+MYSKCG ++ + +VF+ M  RN +SW SMI  FA+HG   + LE +
Sbjct: 504 GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETF 563

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M  EGV+P +VT++++L ACSHVGLV++G     SM E H+I P+ EHYAC+VD++ R
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL +A  FI  MP + DVLVW+  LGAC +H ++E+GK AA K+    P+ PA YI +
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+C+G+W+E  +  ++MKE  + KE G SWIE+  ++H F V D  HP A  I+  L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVP+   +LH
Sbjct: 744 DRLITEIKRCGYVPDTDLVLH 764



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 143/510 (28%), Positives = 246/510 (48%), Gaps = 31/510 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V  S LL    +   F LG  +HA  I+          +++   +V++NSL+S Y K   
Sbjct: 63  VTFSSLLKSCIRARDFRLGKLVHARLIE----------FDIEPDSVLYNSLISLYSKSGD 112

Query: 105 MRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
              A  +F+ M     RD VSW+ M++ +  NG        F   LELG    D   +T 
Sbjct: 113 SAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYC-YTA 171

Query: 162 ILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS-SSGRKVFGEMRV 219
           ++ AC  S+   V ++    +   G +E +V VG +LI  + K  +S  +  KVF +M  
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            NV+TWT +I+  +Q     E ++ F+ M L     +  T  S   AC+ L+ L  G+Q+
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 280 HGILWKLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           H    +  L  D  +E +L+DMY+KC   GSV+D  ++F+  E+   +S T ++ G+ +N
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 337 -GFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
                EA+ LF +M+  G  ++PN    S+     G  +   +GKQ+     K    SN 
Sbjct: 350 CNLATEAINLFSEMITQG-HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNS 408

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N +I+M+ K   +ED+ + F  ++ +N VS+N+ +    R+ N  +A +L  E+   
Sbjct: 409 SVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITER 468

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLL 511
            +  +  TF SLL   ++VG + KG +     ++V ++        C  ++ M  + G +
Sbjct: 469 ELGVSAFTFASLLSGVANVGSIRKGEQI---HSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHG 541
             A      M  + +V+ W +++   + HG
Sbjct: 526 DTASRVFNFMENR-NVISWTSMITGFAKHG 554



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/344 (32%), Positives = 187/344 (54%), Gaps = 14/344 (4%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +D  +F+ +L +C R+    + K++H  +     E +  + N+LI+ Y K G S+ 
Sbjct: 56  GIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAK 115

Query: 210 GRKVFGEMR---VRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVM 265
              VF  MR    R+V++W+A+++    N    + +K+FV+ + LGL+ PN   Y + + 
Sbjct: 116 AEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV-PNDYCYTAVIR 174

Query: 266 ACSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDG 323
           ACS    +  GR   G L K    +SD+C+  +L+DM+ K   S E+A+++F+   EL+ 
Sbjct: 175 ACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+ T+++    Q GF  EA++ F+ MV +G E D   +S+V        +L LGKQ+HS 
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSW 294

Query: 384 IIKSDFTSNPFVNNGLINMYSKC---GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN- 439
            I+S    +  V   L++MY+KC   G ++D  KVF RM   + +SW ++I  + ++ N 
Sbjct: 295 AIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNL 352

Query: 440 GFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFL 482
             +A+ L+ EM  +G VEP   TF S   AC ++     G + L
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVL 396



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 41/338 (12%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NS++S ++K D+M +A + F+ +  ++ VS+NT + G  RN  F+  F       E+ 
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLS---EIT 466

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             +L  ++FT   +LS           + IH  V   G      V NALI+ Y KCGS  
Sbjct: 467 ERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSID 526

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +  +VF  M  RNVI+WT++I+G  ++      L+ F +M    + PN +TY++ + ACS
Sbjct: 527 TASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACS 586

Query: 269 GLQALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            +  + EG R  + +     ++  +   + ++D+  + G + DA   FEF   +   +  
Sbjct: 587 HVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA---FEFINTMPFQADV 643

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           ++   F                               LG   V ++  LGK     I++ 
Sbjct: 644 LVWRTF-------------------------------LGACRVHSNTELGKLAARKILEL 672

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
           D  + P     L N+Y+  G  E+S ++  +M  RN V
Sbjct: 673 D-PNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLV 709



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 13/127 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS  A  G    G  +H+  +K            +     + N+L+S Y KC  +  A 
Sbjct: 480 LLSGVANVGSIRKGEQIHSQVVK----------LGLSCNQPVCNALISMYSKCGSIDTAS 529

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++F+ M  R+ +SW +M++GF ++G        F + +E G  + ++ ++  ILSAC  S
Sbjct: 530 RVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV-KPNEVTYVAILSAC--S 586

Query: 170 ELSLVSK 176
            + LVS+
Sbjct: 587 HVGLVSE 593


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 331/607 (54%), Gaps = 12/607 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V    +LS+ A +    LG  LH   + +   F+            I NSLLS Y KC
Sbjct: 238 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS----------IKNSLLSMYSKC 287

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +  +A KLF  M   DTV+WN M+SG++++G  +    FF   +  G    D  +F+ +
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP-DAITFSSL 346

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +  + E     K IHC +       ++ + +ALI +YFKC   S  + +F +    +V
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           + +TA+ISG + N LY + L++F  +    I+PN +T +S +     L AL  GR++HG 
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K    +   I  A++DMY+KCG +  A++IFE   + D VS   ++   AQ+     A
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + +F +M  +GI  D   +SA L       S   GK IH  +IK    S+ +  + LI+M
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVT 461
           Y+KCG+L+ ++ VF  M  +N VSWNS+IAA   HG    +L L+ EM +  G+ P  +T
Sbjct: 587 YAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQIT 646

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL ++ +C HVG V++G+ F +SMTE + I P+ EHYACVVD+ GRAG L EA   ++ M
Sbjct: 647 FLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSM 706

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  PD  VW  LLGAC +H + E+ + A+ KL    P +   Y+L++N ++ +  W+   
Sbjct: 707 PFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVT 766

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K    MKE  V K  G SWIEI K+ H FV  D  HP++  I+ +L  LL  +  EGY+P
Sbjct: 767 KVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826

Query: 642 NKRFILH 648
                LH
Sbjct: 827 QPYLPLH 833



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 242/453 (53%), Gaps = 7/453 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  YL+  ++    KLFD +  +D V WN M++G+ + G  D     F   + + 
Sbjct: 175 VASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFS-VMRMD 233

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  +F  +LS C    L  +   +H LV + G + E ++ N+L++ Y KCG     
Sbjct: 234 QISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDA 293

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M   + +TW  +ISG VQ+ L EE L  F +M    + P+++T+ S + + S  
Sbjct: 294 SKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKF 353

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L   +QIH  + + ++  D+ + SAL+D Y KC  V  A  IF     +D V  T ++
Sbjct: 354 ENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMI 413

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G+  NG   +++++F  +VK  ++I PN ++  ++L V G+  +L LG+++H  IIK  
Sbjct: 414 SGYLHNGLYIDSLEMFRWLVK--VKISPNEITLVSILPVIGILLALKLGRELHGFIIKKG 471

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F +   +   +I+MY+KCG +  + ++F R++ R+ VSWNSMI   A+  N   A++++ 
Sbjct: 472 FDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFR 531

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M + G+    V+  + L AC+++   + G      M + H ++      + ++DM  + 
Sbjct: 532 QMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKC 590

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G L  A +  + M  K +++ W +++ AC  HG
Sbjct: 591 GNLKAAMNVFKTMKEK-NIVSWNSIIAACGNHG 622



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 216/450 (48%), Gaps = 13/450 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTV--SWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +L  Y  C    +  K+F  + +R +    WN+++S F+RNG  +    F+ + L  G  
Sbjct: 76  ILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV- 134

Query: 153 QLDQASFTIILSAC----DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             D ++F  ++ AC    +   +  +S  +  L    G +    V ++LI +Y + G   
Sbjct: 135 SPDVSTFPCLVKACVALKNFKGIDFLSDTVSSL----GMDCNEFVASSLIKAYLEYGKID 190

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              K+F  +  ++ + W  +++G  +    +  +K F  M +  I+PN++T+   +  C+
Sbjct: 191 VPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCA 250

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               +  G Q+HG++    +  +  I+++L+ MYSKCG  +DA ++F      D V+   
Sbjct: 251 SKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNC 310

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+ Q+G  EE++  F +M+ +G+  D    S++L       +L   KQIH  I++  
Sbjct: 311 MISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHS 370

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            + + F+ + LI+ Y KC  +  +  +FS+    + V + +MI+ +  +G    +LE++ 
Sbjct: 371 ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFR 430

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            +    + P ++T +S+L     +  +  G E L           R      V+DM  + 
Sbjct: 431 WLVKVKISPNEITLVSILPVIGILLALKLGRE-LHGFIIKKGFDNRCNIGCAVIDMYAKC 489

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACS 538
           G +  A    ER+  K D++ W +++  C+
Sbjct: 490 GRMNLAYEIFERLS-KRDIVSWNSMITRCA 518



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           E  P  +S +L        L  GKQ+H+ +I +  + + + +  ++ MY+ CG   D  K
Sbjct: 32  ETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGK 91

Query: 415 VFSRMAPRNSV--SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           +F R+  R S    WNS+I++F R+G   +AL  Y +M   GV P   TF  L+ AC  V
Sbjct: 92  MFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC--V 149

Query: 473 GLVN-KGMEFL 482
            L N KG++FL
Sbjct: 150 ALKNFKGIDFL 160


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 318/558 (56%), Gaps = 1/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I  +L+S Y+K   M +A ++FD + +RD  ++N MV G+ ++G+++  F  F R  ++G
Sbjct: 195 IGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVG 254

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ SF  IL  C   E     K +H      G  +++ V  +LI  Y  CGS    
Sbjct: 255 L-KPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGA 313

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+VF  M+VR+V++WT +I G  +N   E+   LF  M    I P+ +TY+  + AC+  
Sbjct: 314 RRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAIS 373

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L   R+IH  +      +DL + +AL+ MY+KCG+++DA Q+F+     D VS + ++
Sbjct: 374 ANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMI 433

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + +NG+  EA + F  M ++ IE D      +L   G   +L +G +I++  IK+D  
Sbjct: 434 GAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLV 493

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  + N LI M +K G +E +  +F  M  R+ ++WN+MI  ++ HGN  +AL L++ M
Sbjct: 494 SHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRM 553

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E   P  VTF+ +L ACS  G V++G  F   + E   I P  + Y C+VD++GRAG 
Sbjct: 554 LKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGE 613

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   I+ MPVKP   +W +LL AC IHG+ ++ + AAE+  +  P   A Y+ ++++
Sbjct: 614 LDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHM 673

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G W+  AK  K M+  G+ KE G +WIE+  +VH+FVV+D+ HP    I+  LA L
Sbjct: 674 YAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARL 733

Query: 631 LRLMIDEGYVPNKRFILH 648
           +  +  EGY+P  + +LH
Sbjct: 734 MNAIKREGYIPITQNVLH 751



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/482 (29%), Positives = 260/482 (53%), Gaps = 4/482 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y  C  +  A ++FD +  +  V+WN +++G+ + G     F  F++ ++ G  
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGL- 154

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +    +F  +L AC         K +H  V   G+  +  +G AL++ Y K GS    R+
Sbjct: 155 EPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQ 214

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + +R+V T+  ++ G  ++  +E+  +LF +M    + PN +++LS +  C   +A
Sbjct: 215 VFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEA 274

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ +H       L  D+ + ++L+ MY+ CGS+E A ++F+  +  D VS TV++ G
Sbjct: 275 LAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEG 334

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A+NG  E+A  LF  M + GI+ D      ++    +  +L   ++IHS +  + F ++
Sbjct: 335 YAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTD 394

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+  L++MY+KCG ++D+ +VF  M  R+ VSW++MI A+  +G G +A E +  MK 
Sbjct: 395 LLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKR 454

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             +EP  VT+++LL+AC H+G ++ GME      +   +S      A ++ M  + G + 
Sbjct: 455 SNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALII-MNAKHGSVE 513

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
            AR   + M V+ DV+ W A++G  S+HG++    Y  +++ L +   P     +  + +
Sbjct: 514 RARYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRM-LKERFRPNSVTFVGVLSA 571

Query: 573 CS 574
           CS
Sbjct: 572 CS 573



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 209/416 (50%), Gaps = 9/416 (2%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +D  ++  +   C     + + K +   +   G +  +   N LI  Y  CG+ + 
Sbjct: 51  GGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTE 110

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R++F  +  + V+TW A+I+G  Q    +E   LF +M    + P+ +T+LS + ACS 
Sbjct: 111 ARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSS 170

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  G+++H  +      SD  I +AL+ MY K GS++DA Q+F+     D  +  V+
Sbjct: 171 PAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVM 230

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           + G+A++G  E+A +LF +M + G++  PN +S  ++L       +L  GK +H+  + +
Sbjct: 231 VGGYAKSGDWEKAFELFYRMQQVGLK--PNKISFLSILDGCWTPEALAWGKAVHAQCMNA 288

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               +  V   LI MY+ CG +E + +VF  M  R+ VSW  MI  +A +GN   A  L+
Sbjct: 289 GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLF 348

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EG++P  +T++ +++AC+    +N   E + S  ++            +V M  +
Sbjct: 349 ATMQEEGIQPDRITYMHIMNACAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAK 407

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
            G + +AR   + MP + DV+ W A++GA   +G    G  A E   L +  +  P
Sbjct: 408 CGAIKDARQVFDAMP-RRDVVSWSAMIGAYVENG---YGTEAFETFHLMKRSNIEP 459



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF---KRS 146
           ++  +L+  Y KC  +++A ++FD MP RD VSW+ M+  ++ NG     F  F   KRS
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRS 455

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
                 + D  ++  +L+AC       V   I+           V +GNALI    K GS
Sbjct: 456 ----NIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGS 511

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               R +F  M  R+VITW A+I G   +    E L LF +M      PNS+T++  + A
Sbjct: 512 VERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSA 571

Query: 267 CSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDA 311
           CS    + EGR+    L +   +   + +   ++D+  + G +++A
Sbjct: 572 CSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEA 617


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 330/586 (56%), Gaps = 40/586 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN ++  Y++   +  A +LF+ MP RD  SWNTM+SG+ +NG  D     F R  E 
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query: 150 GFYQLDQASFTIILSA----------C----DRSELSLVS------------KMIHCLVY 183
                +  S+  +LSA          C     R   +LVS            K++    +
Sbjct: 187 -----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQF 241

Query: 184 LCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                  +V   N +IT Y + G     R++F E  V++V TWTA++SG +QN++ EE  
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAR 301

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LF KM      P       + M    +Q   E  ++   L+ +    ++   + ++  Y
Sbjct: 302 ELFDKM------PERNEVSWNAMLAGYVQG--ERMEMAKELFDVMPCRNVSTWNTMITGY 353

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++CG + +A  +F+   + D VS   ++ G++Q+G   EA++LFV+M + G  ++ +  S
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           + L       +L LGKQ+H  ++K  + +  FV N L+ MY KCG +E++  +F  MA +
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSWN+MIA ++RHG G  AL  +E MK EG++P D T +++L ACSH GLV+KG ++ 
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +MT+ + + P ++HYAC+VD++GRAGLL +A + ++ MP +PD  +W  LLGA  +HG+
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           +E+ + AA+K+F  +P++   Y+L++N+Y+ SGRW +  K   RM++ GV K  G SWIE
Sbjct: 594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           I+ + H+F V D+ HP+ D I   L EL   M   GYV     +LH
Sbjct: 654 IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLH 699



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 218/463 (47%), Gaps = 43/463 (9%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN  +S Y++  +   A+++F  MP   +VS+N M+SG+LRNGEF++    F    E   
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPE--- 123

Query: 152 YQLDQASFTIILSACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              D  S+ +++    R+  L    ++   +      E +V   N +++ Y + G     
Sbjct: 124 --RDLVSWNVMIKGYVRNRNLGKARELFEIMP-----ERDVCSWNTMLSGYAQNGCVDDA 176

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLTYLSSVMACSG 269
           R VF  M  +N ++W A++S  VQN   EE   LF  + +  L++ N L     +     
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCL-----LGGFVK 231

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + + E RQ    +       D+   + ++  Y++ G +++A Q+F+ +   D  + T +
Sbjct: 232 KKKIVEARQFFDSM----NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAM 287

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QN   EEA +LF KM +   E+  N   A+L  +     + + K++  ++     
Sbjct: 288 VSGYIQNRMVEEARELFDKMPERN-EVSWN---AMLAGYVQGERMEMAKELFDVMP---- 339

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N    N +I  Y++CG + ++  +F +M  R+ VSW +MIA +++ G+ F+AL L+ +
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ 399

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYACVVD----- 503
           M+ EG      +F S L  C+ V  +  G        ++H R+        C V      
Sbjct: 400 MEREGGRLNRSSFSSALSTCADVVALELG-------KQLHGRLVKGGYETGCFVGNALLL 452

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           M  + G + EA    + M  K D++ W  ++   S HG  E+ 
Sbjct: 453 MYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 177/375 (47%), Gaps = 39/375 (10%)

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
           CG + ++   N  I+SY + G  +   +VF  M   + +++  +ISG ++N  +E   KL
Sbjct: 59  CG-DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKL 117

Query: 245 FVKM-HLGLINPNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           F +M    L++ N +   Y+ +       + L + R+    L+++  + D+C  + ++  
Sbjct: 118 FDEMPERDLVSWNVMIKGYVRN-------RNLGKARE----LFEIMPERDVCSWNTMLSG 166

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y++ G V+DA  +F+   E + VS   +L  + QN   EEA  LF       + +  N  
Sbjct: 167 YAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL-VSWN-- 223

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +LG F     +   +Q    +   D  S     N +I  Y++ G ++++ ++F     
Sbjct: 224 -CLLGGFVKKKKIVEARQFFDSMNVRDVVS----WNTIITGYAQSGKIDEARQLFDESPV 278

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN-KGME 480
           ++  +W +M++ + ++    +A EL+++M     E  +V++ ++L      G V  + ME
Sbjct: 279 QDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVSWNAML-----AGYVQGERME 329

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             K + +V         +  ++    + G + EA++  ++MP K D + W A++   S  
Sbjct: 330 MAKELFDVMPCR-NVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQS 387

Query: 541 GDSEMGKYAAEKLFL 555
           G S    + A +LF+
Sbjct: 388 GHS----FEALRLFV 398


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/592 (33%), Positives = 336/592 (56%), Gaps = 39/592 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF- 151
           N+L++ Y +   + +A ++F  +  RD  SWN ++    ++G++      FK   E+   
Sbjct: 146 NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFK---EMKCD 202

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            + +  ++  ++S     E+    + IH  +   G++ ++ V  ALI  Y KCGSS   R
Sbjct: 203 VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAR 262

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +VF +M+ R++++W  +I   V N  + E L+L+ K+ +        T++S + ACS ++
Sbjct: 263 EVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVK 322

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +GR +H  + +  L S++ + +AL++MY+KCGS+E+A ++F   +  D V+ + ++ 
Sbjct: 323 ALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIG 382

Query: 332 GFAQNGFEEEA----------------------------------MQLFVKMV-KAGIEI 356
            +A NG+ ++A                                  M++F +M   AG++ 
Sbjct: 383 AYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKP 442

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D     AVL        L   K +H+ I +S+  SN  V N LINMY++CG LE++ ++F
Sbjct: 443 DAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLF 502

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
           +    +  VSW +M+AAF+++G   +AL+L++EM LEGV+P DVT+ S+L  C+H G + 
Sbjct: 503 AAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE 562

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G  +   M E+H ++P A+H+A +VD++GR+G L +A+  +E MP +PD + W   L A
Sbjct: 563 QGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTA 622

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C IHG  E+G+ AAE+++   P S APYI M+NIY+  G W++ A   K+M+E G+ K  
Sbjct: 623 CRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLP 682

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G+S+IE++ ++H F    K HP+ D I   L  L  LM   GYVP+ + +LH
Sbjct: 683 GLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 258/510 (50%), Gaps = 16/510 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           T++ N+L+S Y KCD + +A  +F+ M    R+ VSWN M++ + +NG        + R 
Sbjct: 42  TMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWR- 100

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L     D  +F  +L AC  S L+   + IH  V+  G +   ++ NAL+T Y + GS
Sbjct: 101 MNLQGLGTDHVTFVSVLGAC--SSLAQ-GREIHNRVFYSGLDSFQSLANALVTMYARFGS 157

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               +++F  ++ R+  +W AVI    Q+  +   L++F +M    + PNS TY++ +  
Sbjct: 158 VGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD-VKPNSTTYINVISG 216

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S  + L EGR+IH  +      +DL + +AL++MY KCGS  +A ++F+  ++ D VS 
Sbjct: 217 FSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW 276

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            V++  +  NG   EA++L+ K+   G +       ++LG      +L  G+ +HS I++
Sbjct: 277 NVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILE 336

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               S   V   L+NMY+KCG LE++ KVF+ M  R++V+W+++I A+A +G G  A + 
Sbjct: 337 RGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKA 396

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            +     G   T +++ +++      G     M+  + MT    + P A  +  V++   
Sbjct: 397 RKVFDRLGSRDT-ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACA 455

Query: 507 RAGLLIEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPA 562
             G L E ++    I    ++ +V+V   L+   +  G  E     AE+LF A  + +  
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLE----EAERLFAAAKEKTVV 511

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGV 592
            +  M   +S  GR+ E     + M   GV
Sbjct: 512 SWTAMVAAFSQYGRYAEALDLFQEMDLEGV 541



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/408 (33%), Positives = 221/408 (54%), Gaps = 17/408 (4%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D  +F  +L +C      +  + +H  +    +E +  VGNALI+ Y KC S    R 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 213 VFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           VF  M  R RNV++W A+I+   QN    E L L+ +M+L  +  + +T++S + ACS  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS-- 121

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L +GR+IH  ++   L S   + +AL+ MY++ GSV DA ++F+  +  D  S   ++
Sbjct: 122 -SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS--LGLGKQIHSLIIKSD 388
           +  +Q+G    A+++F +M     ++ PN  + +  + G  T   L  G++IH+ I+ + 
Sbjct: 181 LAHSQSGDWSGALRIFKEM---KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG 237

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F ++  V   LINMY KCG   ++ +VF +M  R+ VSWN MI  +  +G+  +ALELY+
Sbjct: 238 FDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQ 297

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           ++ +EG + T  TF+S+L ACS V  + +G      + E    S  A   A +V+M  + 
Sbjct: 298 KLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATA-LVNMYAKC 356

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA--AEKLF 554
           G L EAR     M  + D + W  L+GA + +G    GK A  A K+F
Sbjct: 357 GSLEEARKVFNAMKNR-DAVAWSTLIGAYASNG---YGKDARKARKVF 400



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 148/321 (46%), Gaps = 18/321 (5%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLK---CDQMRNAVKLFDDMPMRDTVSWNTMVS 128
           K F    N++        V W++L+  Y         R A K+FD +  RDT+SWN M++
Sbjct: 364 KVFNAMKNRDA-------VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMIT 416

Query: 129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGY 187
            +++NG        F+        + D  +F  +L AC     LS V K +H  +     
Sbjct: 417 TYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEV-KALHAQISESEL 475

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E  V V N LI  Y +CGS     ++F   + + V++WTA+++   Q   Y E L LF +
Sbjct: 476 ESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQE 535

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCG 306
           M L  + P+ +TY S +  C+   +L +G +    + +L AL       +A++D+  + G
Sbjct: 536 MDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSG 595

Query: 307 SVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            + DA ++ E    E D V+    L     +G     ++L     +   E+DP+  +  +
Sbjct: 596 RLFDAKELLESMPFEPDPVAWMTFLTACRIHG----KLELGEAAAERVYELDPSSTAPYI 651

Query: 366 GVFGVDTSLGLGKQIHSLIIK 386
            +  +  + G+ +++ S+  K
Sbjct: 652 AMSNIYAAHGMWEKVASVRKK 672


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/567 (33%), Positives = 327/567 (57%), Gaps = 6/567 (1%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y       + N+L+SFY K +++ +A+ +FD+MP RD +SWN+++ G   NG +D     
Sbjct: 13  YGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVEL 72

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F R + L   +LD  +   ++ AC +S  S +  ++H      G   E ++GNAL+  Y 
Sbjct: 73  FVR-MWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYS 131

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
            C    S  K+F  M  +NV++WTA+I+   +   +++   LF +M L  I P+     S
Sbjct: 132 NCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITS 191

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ A +G ++L  G+ +HG   +  ++  L + +ALM+MY KCG +E+A  IF+   + D
Sbjct: 192 ALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKD 251

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            +S   ++ G++++    EA  LF +M+   +++ PN V+   +L      +SL  G+++
Sbjct: 252 TISWNTLIGGYSRSNLANEAFTLFNEML---LQLRPNAVTMACILPAAASLSSLERGREM 308

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+  ++  +  + FV N L++MY KCG L  + ++F  +  +N +SW  MIA +  HG G
Sbjct: 309 HAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRG 368

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
             A+ L+E+MK  G++P   +F ++L+ACSH GL ++G  F  +M   HRI P+ +HYAC
Sbjct: 369 RDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYAC 428

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +VD++   G L EA  FIE MP++PD  +W +LL  C IH + ++ +  AE +F  +P++
Sbjct: 429 MVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPEN 488

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              Y+L+ANIY+ + RW+   K   ++   G+ + TG SWIE+  + H F  +++ HPQ 
Sbjct: 489 TGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQG 548

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFIL 647
             I   L ++ R M +EG+ P K++ L
Sbjct: 549 MRIAEFLDDVARRMQEEGHDPKKKYAL 575



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 196/406 (48%), Gaps = 20/406 (4%)

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           ++H  +   G+  +  V NALI+ Y K         VF EM  R++I+W ++I G   N 
Sbjct: 5   VVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNG 64

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
           LY++ ++LFV+M L     +S T LS + AC        G  +HG   +  L S+  + +
Sbjct: 65  LYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGN 124

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+DMYS C       +IF   E+ + VS T ++  + + G  ++   LF +M   GI  
Sbjct: 125 ALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRP 184

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D   +++ L  F  + SL  GK +H   I++       V N L+ MY KCG +E++  +F
Sbjct: 185 DVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIF 244

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  ++++SWN++I  ++R     +A  L+ EM L+ + P  VT   +L A + +  + 
Sbjct: 245 DHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLE 303

Query: 477 KGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           +G        E+H  + R  +         +VDM  + G L+ AR   + M    +++ W
Sbjct: 304 RG-------REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFD-MLTNKNLISW 355

Query: 531 QALLGACSIHGDSE--MGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             ++    +HG     +  +   K    QPD+ +     A +Y+CS
Sbjct: 356 TIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGS---FSAILYACS 398



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 20/273 (7%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G  +HG L K    +   + +AL+  Y+K   +EDA  +F+   + D +S   I+ G A
Sbjct: 2   DGLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            NG  ++A++LFV+M   G E+D   + +V+          +G  +H   +++   S   
Sbjct: 62  SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + N L++MYS C D   + K+F  M  +N VSW +MI ++ R G+  K   L++EM LEG
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---------RISPRAEHYACVVDMV 505
           + P      S L A +       G E LK    VH          + P A     +++M 
Sbjct: 182 IRPDVFAITSALDAFA-------GNESLKHGKSVHGYAIRNGIEEVLPVAN---ALMEMY 231

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            + G + EAR FI     K D + W  L+G  S
Sbjct: 232 VKCGYMEEAR-FIFDHVTKKDTISWNTLIGGYS 263


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/647 (32%), Positives = 344/647 (53%), Gaps = 69/647 (10%)

Query: 70  FIKTFEPFDNQNVYN-VP-NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           + KT    D  +++N +P   T  WN++LS Y K  ++  A ++FD +P+RD+VSW T++
Sbjct: 20  YAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTII 79

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
            G+ + G F+     F   ++       Q + T +L++C  +    + K +H  V   G 
Sbjct: 80  VGYNQMGRFEDAIKIFVDMVKDKVLPT-QFTLTNVLASCAATGSRGIGKKVHSFVVKLGL 138

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN-------------------------- 221
              V V N+L+  Y K G     + VF  M++RN                          
Sbjct: 139 HACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFEL 198

Query: 222 -----VITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCE 275
                +++W ++I+G  Q+    E L+ F   +    + P+  +  S++ AC+ L+ L  
Sbjct: 199 LSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSF 258

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVE-------------------------- 309
           G+QIHG + +    +   + +AL+ MY+K G VE                          
Sbjct: 259 GKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGY 318

Query: 310 -------DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
                   A QIF   ++ D V+ T ++VG+ QNG   +A+++F  MV  G   +   ++
Sbjct: 319 VKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLA 378

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP- 421
           A+L      TSL  GKQIH+  I+S    +P V N L  MY+K G +  + KVF+ +   
Sbjct: 379 AMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQN 438

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R++VSW SMI A A+HG G +A+EL+E+M   G++P  +T++ +L AC+H GLV +G  +
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSY 498

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              M  VH+I P   HYAC+VD+ GRAGLL EA  F+E MP++PDV+ W +LL +C ++ 
Sbjct: 499 FDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYK 558

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + ++ K AAE+L L +P++   Y  +AN+YS  G+W + AK  K MK  GV KE G+SW+
Sbjct: 559 NVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWV 618

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +I+ + H F V+D +HPQ D I+ ++ ++ + +   G+ P+   +LH
Sbjct: 619 QIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLH 665



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 212/490 (43%), Gaps = 85/490 (17%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           VL     ++ +L+  A  G   +G  +H+  +K            +     + NSLL+ Y
Sbjct: 103 VLPTQFTLTNVLASCAATGSRGIGKKVHSFVVK----------LGLHACVPVANSLLNMY 152

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG------------------ 141
            K   ++ A  +FD M +R+T SWN M+S  +  G  D+                     
Sbjct: 153 AKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIA 212

Query: 142 -------------FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE 188
                        FF   L+    + D+ S    LSAC   E     K IH  +    ++
Sbjct: 213 GCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFD 272

Query: 189 EEVTVGNALIT---------------------------------SYFKCGSSSSGRKVFG 215
               VGNALI+                                  Y K G  +  R++F 
Sbjct: 273 ASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFN 332

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            ++  +V+ WTA+I G VQN L  + +++F  M      PNS T  + + A S + +L  
Sbjct: 333 SLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNH 392

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFA 334
           G+QIH    +        + +AL  MY+K GS+  A ++F    +  D VS T +++  A
Sbjct: 393 GKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALA 452

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--IIKSDFTSN 392
           Q+G  EEA++LF +M+  GI+  P+ ++ V GV    T  GL +Q  S   ++K+    +
Sbjct: 453 QHGLGEEAIELFEQMLTLGIK--PDHITYV-GVLSACTHGGLVEQGRSYFDLMKNVHKID 509

Query: 393 PFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEE 449
           P +++   +++++ + G L+++ K    M    + ++W S++++   + N   A    E 
Sbjct: 510 PTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAER 569

Query: 450 MKLEGVEPTD 459
           + L  +EP +
Sbjct: 570 LLL--IEPNN 577



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 45/188 (23%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKC-------------------------------GDLEDS 412
           ++K   T + ++ N L+N+Y+K                                G LE +
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +VF  +  R+SVSW ++I  + + G    A++++ +M  + V PT  T  ++L +C+  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPD 526
           G    G        +VH    +   +ACV      ++M  + G L  A+   +RM ++ +
Sbjct: 121 GSRGIG-------KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-N 172

Query: 527 VLVWQALL 534
              W A++
Sbjct: 173 TSSWNAMI 180


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 330/586 (56%), Gaps = 40/586 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN ++  Y++   +  A +LF+ MP RD  SWNT++SG+ +NG  D     F R  E 
Sbjct: 122 VSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181

Query: 150 GFYQLDQASFTIILSA----------C----DRSELSLVS------------KMIHCLVY 183
                +  S+  +LSA          C     R   +LVS            K++    +
Sbjct: 182 -----NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQF 236

Query: 184 LCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  +V   N +IT Y + G     R++F E  V +V TWTA++SG +QN++ EE  
Sbjct: 237 FDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEAR 296

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LF +M      P       + M    +Q   E  ++   L+ +    ++   + ++  Y
Sbjct: 297 ELFDRM------PERNEVSWNAMLAGYVQG--ERVEMAKELFDVMPCRNVSTWNTMITGY 348

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++CG + +A  +F+   + D VS   ++ G++Q+G   EA++LFV M + G  ++ +  S
Sbjct: 349 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFS 408

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           + L       +L LGKQ+H  ++K  + +  FV N L+ MY KCG +E++  +F  MA +
Sbjct: 409 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 468

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSWN+MIA ++RHG G +AL  +E MK EG++P D T +++L ACSH GLV+KG ++ 
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 528

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +MT+ + + P ++HYAC+VD++GRAGLL EA + ++ MP +PD  +W  LLGA  +HG+
Sbjct: 529 HTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGN 588

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           +E+ + AA+K+F  +P++   Y+L++N+Y+ SGRW +  K   RM++ GV K  G SWIE
Sbjct: 589 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 648

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           I+ + H+F V D+ HP+ D I   L +L   M   GYV     +LH
Sbjct: 649 IQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLH 694



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/415 (28%), Positives = 203/415 (48%), Gaps = 39/415 (9%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS- 146
           A V WN LL  ++K  ++  A + FD M +RD VSWNT+++G+ +NGE D     F  S 
Sbjct: 213 ALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESP 272

Query: 147 ---------LELGFYQ--LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE----- 190
                    +  G+ Q  + + +  +     +R+E+S  + +     Y+ G   E     
Sbjct: 273 VHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAG---YVQGERVEMAKEL 329

Query: 191 --------VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                   V+  N +IT Y +CG  S  + +F +M  R+ ++W A+I+G  Q+    E L
Sbjct: 330 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEAL 389

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LFV M       N  ++ S++  C+ + AL  G+Q+HG L K   ++   + +AL+ MY
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 449

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCGS+E+A  +F+     D VS   ++ G++++GF EEA++ F  M + G++ D   + 
Sbjct: 450 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMV 509

Query: 363 AVLGVFGVDTSLGLGKQ-IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA- 420
           AVL        +  G+Q  H++        N      ++++  + G LE++  +   M  
Sbjct: 510 AVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPF 569

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD---VTFLSLLHACS 470
             ++  W +++ A   HGN     EL E    K+  +EP +      LS L+A S
Sbjct: 570 EPDAAIWGTLLGASRVHGN----TELAETAADKIFAMEPENSGMYVLLSNLYASS 620



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 217/461 (47%), Gaps = 43/461 (9%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN  +S Y++  +   A+++F  MP   +VS+N M+SG+LRNGEF++    F    E   
Sbjct: 62  WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPE--- 118

Query: 152 YQLDQASFTIILSACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              D  S+ +++    R+  L    ++   +      E +V   N +++ Y + G     
Sbjct: 119 --RDLVSWNVMIKGYVRNRNLGKARELFERMP-----ERDVCSWNTILSGYAQNGCVDDA 171

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLTYLSSVMACSG 269
           R+VF  M  +N ++W A++S  VQN   EE   LF  + +  L++ N L     +     
Sbjct: 172 RRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCL-----LGGFVK 226

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + + E RQ    +       D+   + ++  Y++ G +++A Q+F+ +   D  + T +
Sbjct: 227 KKKIVEARQFFDSM----KVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAM 282

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QN   EEA +LF +M +   E+  N   A+L  +     + + K++  ++     
Sbjct: 283 VSGYIQNRMVEEARELFDRMPERN-EVSWN---AMLAGYVQGERVEMAKELFDVMP---- 334

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N    N +I  Y++CG + ++  +F +M  R+ VSW +MIA +++ G+ ++AL L+  
Sbjct: 335 CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVL 394

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYACVVD----- 503
           M+ EG      +F S L  C+ V  +  G        ++H R+        C V      
Sbjct: 395 MEREGGRLNRSSFSSALSTCADVVALELG-------KQLHGRLVKGGYETGCFVGNALLL 447

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G + EA    + M  K D++ W  ++   S HG  E
Sbjct: 448 MYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGE 487



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 174/373 (46%), Gaps = 40/373 (10%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           + ++   N  I+SY + G  S   +VF  M   + +++ A+ISG ++N  +E    LF +
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 248 M-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M    L++ N +     +      + L + R+    L++   + D+C  + ++  Y++ G
Sbjct: 116 MPERDLVSWNVM-----IKGYVRNRNLGKARE----LFERMPERDVCSWNTILSGYAQNG 166

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AV 364
            V+DA ++F+   E + VS   +L  + QN   EEA  LF      G   +  +VS   +
Sbjct: 167 CVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCL 220

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           LG F     +   +Q    +   D  S     N +I  Y++ G+++++ ++F      + 
Sbjct: 221 LGGFVKKKKIVEARQFFDSMKVRDVVS----WNTIITGYAQNGEIDEARQLFDESPVHDV 276

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
            +W +M++ + ++    +A EL++ M     E  +V++ ++L      G V    E ++ 
Sbjct: 277 FTWTAMVSGYIQNRMVEEARELFDRMP----ERNEVSWNAML-----AGYVQG--ERVEM 325

Query: 485 MTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             E+  + P      +  ++    + G + EA++  ++MP K D + W A++   S  G 
Sbjct: 326 AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGH 384

Query: 543 SEMGKYAAEKLFL 555
           S    Y A +LF+
Sbjct: 385 S----YEALRLFV 393


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 369/716 (51%), Gaps = 89/716 (12%)

Query: 6   VFLKLNSNFPFCSSLVSPFITKIIQDPTSS-------TSKLVLDNYVDISRLLSISAKEG 58
           V L L++    C++L+   + K     T+         S L+   Y+ ++ L+++ +K G
Sbjct: 5   VPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYL-MNNLMNVYSKTG 63

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           +     +LHA   K F+    +  ++       WN++LS Y K   M +  + FD +P R
Sbjct: 64  Y-----ALHAR--KLFDEMPLRTAFS-------WNTVLSAYSKRGDMDSTCEFFDQLPQR 109

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D+VSW TM+ G+   G++          ++ G  +  Q + T +L++   +      K +
Sbjct: 110 DSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATRCMETGKKV 168

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV---------------- 222
           H  +   G    V+V N+L+  Y KCG     + VF  M VR++                
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228

Query: 223 ---------------ITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMA 266
                          +TW ++ISG  Q       L +F KM    L++P+  T  S + A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---------- 316
           C+ L+ LC G+QIH  +          + +AL+ MYS+CG VE A ++ E          
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 317 -FAEELDG----------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
            F   LDG                      V+ T ++VG+ Q+G   EA+ LF  MV  G
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
              +   ++A+L V     SL  GKQIH   +KS    +  V+N LI MY+K G++  + 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468

Query: 414 KVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           + F  +   R++VSW SMI A A+HG+  +ALEL+E M +EG+ P  +T++ +  AC+H 
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GLVN+G ++   M +V +I P   HYAC+VD+ GRAGLL EA+ FIE+MP++PDV+ W +
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL AC +H + ++GK AAE+L L +P++   Y  +AN+YS  G+W+E AK  K MK+  V
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            KE G SWIE++ +VH F V+D  HP+ + I+  + ++   +   GYVP+   +LH
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLH 704


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 317/560 (56%), Gaps = 6/560 (1%)

Query: 92  WN-----SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           WN      +++ Y KC Q+ +A  +FD MP RD V WNTM+SG+ +NG   +      R 
Sbjct: 63  WNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRM 122

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            E G ++ D  +   IL A   + L  +   +H  V   G+E  V V  AL+  Y KCGS
Sbjct: 123 SEEG-HRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S  R +F  M  R V++W ++I G VQ+   E  + +F KM    + P ++T + ++ A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L  L  G+ +H ++ +L L SD+ + ++L+ MYSKC  V+ A  IF+       VS 
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +++G+AQNG   EA+  F +M    I+ D   + +V+      +     K IH L+I+
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                N FV   L++MY+KCG +  + K+F  M  R+ ++WN+MI  +  HG G  ++EL
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++EMK   ++P D+TFL  L ACSH GLV +G+ F +SM + + I P  +HY  +VD++G
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L +A  FI++MP+KP + V+ A+LGAC IH + ++G+ AA ++F   PD    ++L
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVL 541

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +ANIY+ +  W + AK    M++ G+ K  G S +EI  +VHSF      HPQ+  I+  
Sbjct: 542 LANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSY 601

Query: 627 LAELLRLMIDEGYVPNKRFI 646
           L  L+  +   GYVP+   I
Sbjct: 602 LETLVDEIRAAGYVPDTNSI 621



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 212/430 (49%), Gaps = 14/430 (3%)

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYL 184
           M+ G+ ++   D    FF R ++    +    +FT +L  C D S+L    K IH  V  
Sbjct: 1   MLKGYAKSSSLDSALSFFSR-MKHDSVRPVVYNFTYLLKLCGDNSDLKR-GKEIHGSVIT 58

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G+   +     ++  Y KC   +    +F  M  R+++ W  +ISG  QN   +  L L
Sbjct: 59  SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
            ++M      P+S+T +S + A +  + L  G  +HG + +   +S + + +AL+DMYSK
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           CGSV  A  IF+  +    VS   ++ G+ Q+G  E AM +F KM+  G++  P  V+ V
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQ--PTNVT-V 235

Query: 365 LGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +G       LG    GK +H L+ +    S+  V N LI+MYSKC  ++ +  +F  +  
Sbjct: 236 MGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRN 295

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  VSWN+MI  +A++G   +AL  + EM+   ++P   T +S++ A + + +  +  ++
Sbjct: 296 KTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA-KW 354

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +  +     +         +VDM  + G +  AR   + M  +  V+ W A++     HG
Sbjct: 355 IHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHG 413

Query: 542 DSEMGKYAAE 551
              +GK + E
Sbjct: 414 ---LGKTSVE 420



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 127/250 (50%), Gaps = 16/250 (6%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+S Y KC ++  A  +F ++  +  VSWN M+ G+ +NG  +     F    E+ 
Sbjct: 269 VMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAF---CEMQ 325

Query: 151 FYQLDQASFTIILSACDRSELSL--VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +   SFT++      +ELS+   +K IH LV     ++ V V  AL+  Y KCG+  
Sbjct: 326 SRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH 385

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           + RK+F  M  R+VITW A+I G   + L +  ++LF +M  G I PN +T+L ++ ACS
Sbjct: 386 TARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS 445

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIE------SALMDMYSKCGSVEDAWQIFEFAEELD 322
                  G    G+ +  +++ D  IE       A++D+  + G +  AW   +      
Sbjct: 446 H-----SGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 323 GVSMTVILVG 332
           G+++   ++G
Sbjct: 501 GITVYGAMLG 510


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 329/587 (56%), Gaps = 32/587 (5%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN LL+ Y+K D + +A KLFD+MP R+T+S+ T++ G+  +  F      F R    G 
Sbjct: 76  WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREG- 134

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           ++L+   FT IL     ++   +   IH  ++  G+E    VG ALI +Y  CG     R
Sbjct: 135 HELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAR 194

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +VF  +  +++++WT +++   +N  ++E LKLF +M +    PN+ T+ S   AC GL+
Sbjct: 195 EVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLE 254

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           A   G+ +HG   K   + DL +  AL+D+Y+K G ++DA + FE   + D +  + ++ 
Sbjct: 255 AFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIA 314

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +AQ+   +EA+++F +M +A +  +    ++VL        L LG QIH  +IK    S
Sbjct: 315 RYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHS 374

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM- 450
           + FV+N L+++Y+KCG +E+S+++F+    RN V+WN++I    + G+G KAL L+  M 
Sbjct: 375 DVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNML 434

Query: 451 ----------------------KLE--------GVEPTDVTFLSLLHACSHVGLVNKGME 480
                                  LE         V+P  +TF+ +L AC++ GL+++G  
Sbjct: 435 EYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQA 494

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  SM + H I P  EHY C+V ++GR G L +A   I+ +P +P V+VW+ALLGAC IH
Sbjct: 495 YFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 554

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            D E+G+ +A+++   +P   A ++L++N+Y+ + RW   A   K MK  GV KE G+SW
Sbjct: 555 NDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSW 614

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           IE +  VHSF V D  HP+   I+G+L  L       GY+PN   +L
Sbjct: 615 IESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVL 661



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 199/384 (51%), Gaps = 13/384 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y  C ++  A ++FD +  +D VSW  MV+ F  N  F      F +   +G
Sbjct: 176 VGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG 235

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F + +  +F  +  AC   E   V K +H       YE ++ VG AL+  Y K G     
Sbjct: 236 F-KPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDA 294

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+ F E+  ++VI W+ +I+   Q+   +E +++F +M   L+ PN  T+ S + AC+ +
Sbjct: 295 RRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATM 354

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L  G QIH  + K+ L SD+ + +ALMD+Y+KCG +E++ ++F  +   + V+   ++
Sbjct: 355 EGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVI 414

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VG  Q G  E+A++LF+ M++  ++      S+ L       +L  G QIHSL +K D  
Sbjct: 415 VGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKL 474

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-----WNSMIAAFARHGNGFKALE 445
           +  FV  G+++  +  G L+     F+ M   + +      +  M+    R G+  KA++
Sbjct: 475 T--FV--GVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVK 530

Query: 446 LYEEMKLEGVEPTDVTFLSLLHAC 469
           L +E+     +P+ + + +LL AC
Sbjct: 531 LIDEIPF---QPSVMVWRALLGAC 551



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 203/413 (49%), Gaps = 26/413 (6%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  ++   L  C + +     K +HC +   G   ++   N L+  Y K        K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGL 270
           +F EM  RN I++  +I G  ++  + E ++LFV++H     +NP   T +  ++  +  
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G  IH  ++KL  +S+  + +AL+D YS CG V+ A ++F+     D VS T ++
Sbjct: 155 GEL--GWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPN------MVSAVLGVFGVDTSLGLGKQIHSLI 384
             FA+N   +EA++LF +M   G +  PN      +  A LG+   D    +GK +H   
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFK--PNNFTFASVFKACLGLEAFD----VGKSVHGCA 266

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +KS +  + +V   L+++Y+K GD++D+ + F  +  ++ + W+ MIA +A+     +A+
Sbjct: 267 LKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAV 326

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVV 502
           E++ +M+   V P   TF S+L AC+ +  +N G +       V +I   ++ +    ++
Sbjct: 327 EMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQI---HCHVIKIGLHSDVFVSNALM 383

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           D+  + G +  +       P + DV  W  ++      GD E     A +LFL
Sbjct: 384 DVYAKCGRMENSMELFAESPHRNDV-TWNTVIVGHVQLGDGE----KALRLFL 431



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 160/315 (50%), Gaps = 22/315 (6%)

Query: 250 LGLINP---NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +G ++P   NS  Y +++  C        G+ +H  + K     DL   + L++MY K  
Sbjct: 28  VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSD 87

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            + DA ++F+   E + +S   ++ G+A++    EA++LFV++ + G E++P + + +L 
Sbjct: 88  FLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILK 147

Query: 367 VFGVDTSLG-LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
           +  V T  G LG  IH+ I K    SN FV   LI+ YS CG ++ + +VF  +  ++ V
Sbjct: 148 LL-VSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMV 206

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW  M+  FA +    +AL+L+ +M++ G +P + TF S+  AC        G+E     
Sbjct: 207 SWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC-------LGLEAFDVG 259

Query: 486 TEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
             VH  + ++ +         ++D+  ++G + +AR   E +P K DV+ W  ++     
Sbjct: 260 KSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIAR--- 315

Query: 540 HGDSEMGKYAAEKLF 554
           +  S+  K A E  F
Sbjct: 316 YAQSDQSKEAVEMFF 330


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 327/585 (55%), Gaps = 13/585 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +++   FD Q+VY       +  SL+ FY K   +  A  +FD +  +  V+
Sbjct: 170 GAQLHGFVVRS--GFD-QDVY-------VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVT 219

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W T+++G+ + G   +    F +  E      D+   + +LSAC   E     K IH  V
Sbjct: 220 WTTIIAGYTKCGRSAVSLELFAQMRETNVVP-DRYVVSSVLSACSMLEFLEGGKQIHAYV 278

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G E +V+V N LI  Y KC    +GRK+F +M V+N+I+WT +ISG +QN    E +
Sbjct: 279 LRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAM 338

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF +M+     P+     S + +C   +AL +GRQ+H    K  L+SD  +++ L+DMY
Sbjct: 339 KLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMY 398

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +K   + DA ++F+   E + +S   ++ G++      EA++LF +M     + +    +
Sbjct: 399 AKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFA 458

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           A++       SL  G+Q H+ ++K      PFV N L++MY+KCG +E++ K+F+    R
Sbjct: 459 ALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWR 518

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V WNSMI+  A+HG   +AL ++ EM  EG++P  VTF+++L ACSH G V  G+   
Sbjct: 519 DVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHF 578

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            SM     I P  EHYACVV ++GR+G L EA+ FIE+MP++P  +VW++LL AC I G+
Sbjct: 579 NSMPGFG-IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGN 637

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E+GKYAAE      P     YIL++NI++  G W +  K   RM    V KE G SWIE
Sbjct: 638 VELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIE 697

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           +  +V+ F+  D  H +AD I  VL  L++ +   GYVP+   +L
Sbjct: 698 VNNKVNVFIARDTTHREAD-IGSVLDILIQHIKGAGYVPDATALL 741



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 148/522 (28%), Positives = 271/522 (51%), Gaps = 15/522 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V  + + T + N L++   K D++ NA  +FD MP ++ ++W++MVS + + G  +    
Sbjct: 77  VSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALM 136

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSK--MIHCLVYLCGYEEEVTVGNALIT 199
            F           ++     ++ AC  ++L +V K   +H  V   G++++V VG +LI 
Sbjct: 137 VFVDLQRKSGEHPNEFVLASVIRAC--TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLID 194

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y K G+    R VF ++  +  +TWT +I+G  +       L+LF +M    + P+   
Sbjct: 195 FYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYV 254

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S + ACS L+ L  G+QIH  + +   + D+ + + L+D Y+KC  V+   ++F+   
Sbjct: 255 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 314

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             + +S T ++ G+ QN F+ EAM+LF +M + G + D    ++VL   G   +L  G+Q
Sbjct: 315 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ 374

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+  IK++  S+ FV NGLI+MY+K   L D+ KVF  MA +N +S+N+MI  ++    
Sbjct: 375 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEK 434

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHY 498
             +ALEL+ EM++   +P + TF +L+ A S++  +  G +F   + ++     P   + 
Sbjct: 435 LSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN- 493

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLA 556
             +VDM  + G + EAR       +  DV+ W +++   + HG++E  +G +   +  + 
Sbjct: 494 -ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEALGMF---REMMK 548

Query: 557 QPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEMGVDKET 596
           +   P     +A + +CS  GR ++       M   G+   T
Sbjct: 549 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGT 590



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 192/366 (52%), Gaps = 15/366 (4%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K+IH  + + G + +  + N LI    K     + R VF +M  +N+ITW++++S   Q 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 236 QLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
              EE L +FV +      +PN     S + AC+ L  + +G Q+HG + +     D+ +
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            ++L+D YSK G++E+A  +F+   E   V+ T I+ G+ + G    +++LF +M +  +
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D  +VS+VL    +   L  GKQIH+ +++     +  V N LI+ Y+KC  ++   K
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F +M  +N +SW +MI+ + ++   ++A++L+ EM   G +P      S+L +C     
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG---- 364

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                E L+   +VH  + +A   +       ++DM  ++ LLI+A+   + M  + +V+
Sbjct: 365 ---SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM-AEQNVI 420

Query: 529 VWQALL 534
            + A++
Sbjct: 421 SYNAMI 426



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 18/226 (7%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K IH  II S   S+ F+ N LIN+ SK   ++++  VF +M  +N ++W+SM++ +++ 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 438 GNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           G   +AL ++ +++ + G  P +    S++ AC+ +G+V KG + L              
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ-LHGFVVRSGFDQDVY 187

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               ++D   + G + EAR   +++  K  V  W  +     I G ++ G+ A      A
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAV-TWTTI-----IAGYTKCGRSAVSLELFA 241

Query: 557 QPDS----PAPYILMANIYSCS------GRWKERAKAIKRMKEMGV 592
           Q       P  Y++ + + +CS      G  +  A  ++R  EM V
Sbjct: 242 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 287


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 332/560 (59%), Gaps = 19/560 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN++LS Y +   ++ A ++FD+MP ++++SWN M++ +++NG  +     F+     
Sbjct: 143 VSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE----- 197

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCL-VYLCGYEEEVTVGNALITSYFKCGSSS 208
                 +A + +I   C        ++++    ++    E +    N +I+ Y + G   
Sbjct: 198 -----SKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELL 252

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             +++F E  VR+V TWTA++SG VQN + +E  ++F     G+   NS+++ + +    
Sbjct: 253 EAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD----GMPEKNSVSWNAIIAGYV 308

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             + + + R+    L++     ++   + ++  Y++ G +  A   F+   + D +S   
Sbjct: 309 QCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAA 364

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ G+AQ+G+ EEA+ LFV+M + G  ++ +  ++ L       +L LGKQ+H  ++K+ 
Sbjct: 365 IIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAG 424

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S  +V N L+ MY KCG+++D+  VF  +  +  VSWN+MIA +ARHG G +AL L+E
Sbjct: 425 LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFE 484

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK  G+ P DVT + +L ACSH GLV+KG E+  SMT+ + I+  ++HY C++D++GRA
Sbjct: 485 SMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRA 544

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A++ ++ MP +PD   W ALLGA  IHG++E+G+ AA+ +F  +PD+   Y+L++
Sbjct: 545 GRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLS 604

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ SGRW +  +   RM++ GV K  G SW+E++ ++H+F V D +HP+ D I+  L 
Sbjct: 605 NLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLE 664

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL   M  EGYV + + +LH
Sbjct: 665 ELDLKMKKEGYVSSTKLVLH 684



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 219/467 (46%), Gaps = 57/467 (12%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN  ++ +++  Q  +A++LF+ MP R ++SWN M+SG L N +F     +  R L  
Sbjct: 50  VKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKF-----YLARQLFE 104

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  S+ +++S C R      ++    L++    E +V   NA+++ Y + G    
Sbjct: 105 KMPTRDLVSWNVMISGCVRYRNLRAAR----LLFDQMPERDVVSWNAMLSGYAQNGYVKE 160

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLT--YLSSVMA 266
            +++F EM  +N I+W  +++  VQN   E+  +LF  K    LI+ N +   Y+     
Sbjct: 161 AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKR--- 217

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
                 L + R   GI  ++  + D    + ++  Y++ G + +A ++FE +   D  + 
Sbjct: 218 ----NRLVDAR---GIFDRMP-ERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTW 269

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
           T ++ G+ QNG  +EA ++F  M       + N VS  A++  +     +   +++    
Sbjct: 270 TAMVSGYVQNGMLDEARRVFDGMP------EKNSVSWNAIIAGYVQCKRMDQAREL---- 319

Query: 385 IKSDFTSNPFVN----NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
               F + P  N    N +I  Y++ GD+  +   F RM  R+S+SW ++IA +A+ G G
Sbjct: 320 ----FEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYA 499
            +AL L+ EMK +G      TF S L  C+ +  +  G        +VH R+        
Sbjct: 376 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG-------KQVHGRVVKAGLESG 428

Query: 500 CVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           C V      M  + G + +A    E +  K +V+ W  ++   + HG
Sbjct: 429 CYVGNALLVMYCKCGNIDDAYIVFEGIEEK-EVVSWNTMIAGYARHG 474



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 36/303 (11%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--- 145
           +V WN++++ Y++C +M  A +LF+ MP ++  SWNTM++G+ +NG+      FF R   
Sbjct: 297 SVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQ 356

Query: 146 -------SLELGFYQ--------------------LDQASFTIILSACDRSELSLVSKMI 178
                  ++  G+ Q                    L++++FT  LS C       + K +
Sbjct: 357 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 416

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  V   G E    VGNAL+  Y KCG+      VF  +  + V++W  +I+G  ++   
Sbjct: 417 HGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFG 476

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESA 297
           +E L LF  M    I P+ +T +  + ACS    + +G +  + +     + ++    + 
Sbjct: 477 KEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 536

Query: 298 LMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           ++D+  + G ++DA  + +    E D  +   +L     +G  E    L  K  K   E+
Sbjct: 537 MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTE----LGEKAAKMIFEM 592

Query: 357 DPN 359
           +P+
Sbjct: 593 EPD 595



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 191/437 (43%), Gaps = 73/437 (16%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           + ++   N  IT++ + G   S  ++F  M  R+ I+W A+ISG + N  +    +LF K
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 248 MHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M    L++ N +     +  C   + L   R    +L+    + D+   +A++  Y++ G
Sbjct: 106 MPTRDLVSWNVM-----ISGCVRYRNLRAAR----LLFDQMPERDVVSWNAMLSGYAQNG 156

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            V++A +IF+     + +S   +L  + QNG  E+A +LF        + D  ++S    
Sbjct: 157 YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFES------KADWELISW--- 207

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                                         N ++  Y K   L D+  +F RM  R+ VS
Sbjct: 208 ------------------------------NCMMGGYVKRNRLVDARGIFDRMPERDEVS 237

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+MI+ +A++G   +A  L+EE  +  V     T+ +++      G++++       M 
Sbjct: 238 WNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMP 293

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           E + +S     +  ++    +   + +AR   E MP + +V  W  ++   + +GD    
Sbjct: 294 EKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYAQNGDIAQA 347

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG--VDKET-------- 596
           +   ++  + Q DS +   ++A  Y+ SG  +E       MK  G  +++ T        
Sbjct: 348 RNFFDR--MPQRDSISWAAIIAG-YAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 404

Query: 597 -GISWIEIEKQVHSFVV 612
             I+ +E+ KQVH  VV
Sbjct: 405 AEIAALELGKQVHGRVV 421


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 325/567 (57%), Gaps = 9/567 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   I N L++ Y K   + +A  +F+ M  +D+VSWN+++SG  +N   +     F R 
Sbjct: 420 NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRM 479

Query: 147 LELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
              G      ++FT+I  LS+C      ++ + IHC     G + +V+V NAL+  Y + 
Sbjct: 480 RRTGSMP---SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAET 536

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSS 263
           G  +   KVF  M   + ++W +VI  L  ++    + +K F++M  G    + +T+++ 
Sbjct: 537 GCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINI 596

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELD 322
           + A S L       QIH ++ K  L  D  I +AL+  Y KCG + +  +IF   +E  D
Sbjct: 597 LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRD 656

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   ++ G+  N    +AM L   M++ G  +D    + +L       +L  G ++H+
Sbjct: 657 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHA 716

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             I++   S+  V + L++MYSKCG ++ + + F  M  RN  SWNSMI+ +ARHG+G K
Sbjct: 717 CGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEK 776

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL+L+  M L+G  P  VTF+ +L ACSHVG V +G E  KSM+EV+R+SPR EH++C+V
Sbjct: 777 ALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMV 836

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDS 560
           D++GRAG L E   FI  MP+KP+VL+W+ +LGAC      ++E+G+ AAE L   +P +
Sbjct: 837 DLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQN 896

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              Y+L+AN+Y+   +W++ AKA   MKE  V KE G SW+ ++  VH FV  DK+HP+ 
Sbjct: 897 AVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEK 956

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFIL 647
           D I+  L EL R M D GY+P  ++ L
Sbjct: 957 DLIYDKLRELNRKMRDAGYIPQTKYAL 983



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 233/477 (48%), Gaps = 21/477 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y++   + +A KLFD+M  R+ V+W  ++SG+ +NG+ D     F+  +  GF 
Sbjct: 110 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 169

Query: 153 QLDQASFTIILSACDRSELS--LVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-GSSSS 209
             +  +F   L AC  S  S   +   IH L+    Y  +V V N LI+ Y  C  S++ 
Sbjct: 170 P-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 228

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGL-INPNSLTYLSSV- 264
            R VF  + +RN I+W ++IS   +         LF  M    LG    PN  T+ S + 
Sbjct: 229 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 288

Query: 265 MACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
            ACS +   LC   Q+   + K     DL + SAL+  +++ G  +DA  IFE     + 
Sbjct: 289 TACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNV 348

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGKQ 379
           VSM  ++VG  +    E A ++F +M K  + I+ +    +L  F     ++     G++
Sbjct: 349 VSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGRE 407

Query: 380 IHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           +H+ +I++    N   + NGL+NMY+K G + D+  VF  M  ++SVSWNS+I+   ++ 
Sbjct: 408 VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNE 467

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
               A E +  M+  G  P++ T +S L +C+ +G +  G +      ++   +  +   
Sbjct: 468 CSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSN 527

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           A ++ +    G   E       MP + D + W +++GA S   DSE     A K FL
Sbjct: 528 A-LLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGALS---DSEASVSQAVKYFL 579



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 153/611 (25%), Positives = 269/611 (44%), Gaps = 118/611 (19%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-------------------- 116
           FD   + N    ++ WNS++S Y +     +A  LF  M                     
Sbjct: 233 FDGIGIRN----SISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 288

Query: 117 -------------------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKR------ 145
                                    ++D    + +VSGF R G  D     F++      
Sbjct: 289 TACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNV 348

Query: 146 ----SLELGFYQLDQA-------------------SFTIILSACDRSELSLVS------K 176
                L +G  +  Q                    S+ ++LSA   SE S++       +
Sbjct: 349 VSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAF--SEFSVLEEGRRKGR 406

Query: 177 MIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
            +H  V   G  + +V +GN L+  Y K G+ +    VF  M  ++ ++W ++ISGL QN
Sbjct: 407 EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 466

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           +  E+  + F +M      P++ T +S++ +C+ L  +  G QIH    KL L +D+ + 
Sbjct: 467 ECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 526

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGI 354
           +AL+ +Y++ G   +  ++F    E D VS   ++   + +     +A++ F++M++ G 
Sbjct: 527 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGW 586

Query: 355 EIDP----NMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            +      N++SAV       +SL L     QIH+L++K   + +  + N L++ Y KCG
Sbjct: 587 GLSRVTFINILSAV-------SSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCG 639

Query: 408 DLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           ++ +  K+F+RM+  R+ VSWNSMI+ +  +    KA++L   M  +G      TF ++L
Sbjct: 640 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATIL 699

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIER 520
            AC+ V  + +GM       EVH    RA  E    V    VDM  + G +  A  F E 
Sbjct: 700 SACASVATLERGM-------EVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFEL 752

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-AQPDSPAPYILMANIYSCSGRWKE 579
           MP++ +V  W +++   + HG  E       ++ L  QP     ++ + +  S  G  +E
Sbjct: 753 MPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEE 811

Query: 580 RAKAIKRMKEM 590
             +  K M E+
Sbjct: 812 GFEHFKSMSEV 822



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 209/472 (44%), Gaps = 54/472 (11%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+   + + N LI  Y + G   S +K+F EM  RN++TW  +ISG  QN   +E    F
Sbjct: 101 GFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARF 160

Query: 246 VKMHLGLINPNSLTYLSSVMAC--SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
             M      PN   + S++ AC  SG      G QIHG++ K    SD+ + + L+ MY 
Sbjct: 161 RDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 220

Query: 304 KC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI--EIDPNM 360
            C  S  DA  +F+     + +S   I+  +++ G    A  LF  M K G+     PN 
Sbjct: 221 SCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNE 280

Query: 361 VS----AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
            +           VD  L + +Q+ + + KS F  + +V++ L++ +++ G  +D+  +F
Sbjct: 281 YTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIF 340

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVGLV 475
            +M  RN VS N ++    +   G  A +++ EMK L G+     +++ LL A S   ++
Sbjct: 341 EQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFSVL 398

Query: 476 NKGMEFLKSMTEVH----RISPRAEHYAC---VVDMVGRAGLLIEARSFIERMPVKPDVL 528
            +G    +   EVH    R        A    +V+M  ++G + +A S  E M V+ D +
Sbjct: 399 EEGR---RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKDSV 454

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAIKR 586
            W +L+        +E  + AAE     +     P+ + L++ + SC+            
Sbjct: 455 SWNSLISGLD---QNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCA------------ 499

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
                      + WI + +Q+H     D +    DT   V   LL L  + G
Sbjct: 500 ----------SLGWIMLGEQIHC----DGLKLGLDTDVSVSNALLALYAETG 537



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 14/261 (5%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           E R++H    K     +L + + L+++Y + G +  A ++F+     + V+   ++ G+ 
Sbjct: 89  EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 148

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLIIKSDFTSN 392
           QNG  +EA   F  MV+AG   +     + L         G  LG QIH LI K+ + S+
Sbjct: 149 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 208

Query: 393 PFVNNGLINMYSKCGD-LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             V N LI+MY  C D   D+  VF  +  RNS+SWNS+I+ ++R G+   A +L+  M+
Sbjct: 209 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 268

Query: 452 LEGV----EPTDVTFLSLL-HACSHVGLVNKGMEFLKSM-TEVHRISPRAEHY--ACVVD 503
            EG+    +P + TF SL+  ACS V     G+  L+ M   V +     + Y  + +V 
Sbjct: 269 KEGLGFSFKPNEYTFGSLITTACSSVDF---GLCVLEQMLARVEKSGFLQDLYVSSALVS 325

Query: 504 MVGRAGLLIEARSFIERMPVK 524
              R GL  +A++  E+M V+
Sbjct: 326 GFARFGLTDDAKNIFEQMGVR 346


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/608 (33%), Positives = 333/608 (54%), Gaps = 14/608 (2%)

Query: 43   NYVDISRLLSISAKEG--HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            +Y  ++ L+ ++A  G     LG  +H   +K+           + +   + NSL++ Y 
Sbjct: 901  DYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKS----------GLDSDVSVANSLVNMYS 950

Query: 101  KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
            K      A ++F+DM   D +SWN+M+S   ++   +     F   L  G  + D  +  
Sbjct: 951  KMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL-KPDHFTLA 1009

Query: 161  IILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC      L +S+ IH      G   +  V   LI  Y K G       +F     
Sbjct: 1010 SVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDD 1069

Query: 220  RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
             ++  W A++ G +     ++ L+LF  +H      + +T  ++  AC  L  L +G+QI
Sbjct: 1070 LDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQI 1129

Query: 280  HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
            H    K    SDL + S ++DMY KCG + +A  +F +    D V+ T ++ G   NG E
Sbjct: 1130 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNE 1189

Query: 340  EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            ++A++++ +M ++ +  D    + ++      T+L  G+Q+H+ +IK D  S+PFV   L
Sbjct: 1190 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSL 1249

Query: 400  INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
            ++MY+KCG++ED+ ++F +M  RN   WN+M+   A+HGN  +A+ L++ MK  G+EP  
Sbjct: 1250 VDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDR 1309

Query: 460  VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
            V+F+ +L ACSH GL ++  E+L SM   + I P  EHY+C+VD +GRAGL+ EA   IE
Sbjct: 1310 VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 1369

Query: 520  RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
             MP K    + +ALLGAC I GD E GK  A +LF  +P   A Y+L++NIY+ + RW +
Sbjct: 1370 TMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDD 1429

Query: 580  RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
               A K MK   V K+ G SWI+++  +H FVVDD+ HPQAD I+  + E+++ + ++GY
Sbjct: 1430 VTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGY 1489

Query: 640  VPNKRFIL 647
            VP+  F+L
Sbjct: 1490 VPDTEFVL 1497



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 207/477 (43%), Gaps = 61/477 (12%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL-----RNGEFDMGFGFFKRSL 147
            N+LL+ Y KC  + +A ++FD  P RD V+WN ++  +       +G    G   F R L
Sbjct: 660  NNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLF-RLL 718

Query: 148  ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                    + +   +L  C  S     ++ +H      G E +V V  AL+  Y KCG  
Sbjct: 719  RASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRM 778

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY---LSSV 264
               R +F  MR R+V+ W  ++ G VQ  L +E  +LF + H   + P+  +    L+ V
Sbjct: 779  RDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGV 838

Query: 265  MACSGLQALCEGRQIHGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIFEFAEE 320
               +  +      Q+     KL+L  D     C    L    S+C    D W        
Sbjct: 839  SEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKL----SECLWAGDNWG------- 887

Query: 321  LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
                                 A++ FV M    I+ D   +  VL        L LGKQ+
Sbjct: 888  ---------------------AIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926

Query: 381  HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
            H + +KS   S+  V N L+NMYSK G    + +VF+ M   + +SWNSMI++ A+    
Sbjct: 927  HGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLE 986

Query: 441  FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA- 499
             +++ L+ ++  EG++P   T  S+L ACS +      ++ L    ++H  + +  + A 
Sbjct: 987  EESVNLFIDLLHEGLKPDHFTLASVLRACSSL------IDGLNISRQIHVHALKTGNIAD 1040

Query: 500  -----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                  ++D+  ++G + EA  F+ +     D+  W A++    I  D   GK A E
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAE-FLFQNKDDLDLACWNAMMFGYIIGND---GKKALE 1093



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 169/380 (44%), Gaps = 50/380 (13%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           L+ K  H  + + G   +  + N L+T Y KCGS SS R+VF     R+++TW A++   
Sbjct: 638 LLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAY 697

Query: 233 V-----QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
                  +   +EGL LF  +   L +   +T    +  C     L     +HG   K+ 
Sbjct: 698 AASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG 757

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L+ D+ +  AL+++YSKCG + DA  +F++  E D V   ++L G+ Q G E+EA QLF 
Sbjct: 758 LEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 817

Query: 348 KMVKAGIEIDPNMVSAVL-GVFGVDTSLG--LGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +  ++G+  D   V  +L GV  V+   G  L  Q+ +   K   +              
Sbjct: 818 EFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLS-------------- 863

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
                +D+  VF          WN  ++     G+ + A+E +  M    ++   VT L 
Sbjct: 864 -----DDNPDVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLV 909

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFI 518
           +L A +       G + L+   +VH I+ ++   + V      V+M  + G    AR   
Sbjct: 910 VLAAVA-------GTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 519 ERMPVKPDVLVWQALLGACS 538
             M    D++ W +++ +C+
Sbjct: 963 NDMK-HLDLISWNSMISSCA 981


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 323/561 (57%), Gaps = 2/561 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           NA V+ N+LL  Y++C +++ A  +FD +  +   SWN M++G++ +   +     F+  
Sbjct: 62  NAHVM-NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREM 120

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
              G  Q +  ++ IIL AC         K +H  +   G E +V VG AL+  Y KCGS
Sbjct: 121 CHEGV-QPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGS 179

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            +  R++F  +   ++I+WT +I    Q+   +E  +L ++M      PN++TY+S + A
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+   AL   +++H       L+ D+ + +AL+ MY+K GS++DA  +F+  +  D VS 
Sbjct: 240 CASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSW 299

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            V++  FA++G   EA  LF++M   G + D  M  ++L       +L   K+IH   + 
Sbjct: 300 NVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALD 359

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S    +  V   L++MYSK G ++D+  VF RM  RN VSWN+MI+  A+HG G  ALE+
Sbjct: 360 SGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEV 419

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M   GV+P  VTF+++L ACSH GLV++G     +MT+V+ I P   H  C+VD++G
Sbjct: 420 FRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLG 479

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L+EA+ FI+ M V PD   W ALLG+C  +G+ E+G+  A++     P + A Y+L
Sbjct: 480 RAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVL 539

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NIY+ +G+W   +     M+E G+ KE G SWIE++ ++H F+V D  HP+   I+  
Sbjct: 540 LSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINES 599

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
             +++  +  EGY+P+ R +L
Sbjct: 600 KDKVIEKIKAEGYIPDTRLVL 620



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/430 (30%), Positives = 233/430 (54%), Gaps = 23/430 (5%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D   +  +L  C + +  + +K +H  +     E+   V N L+  Y +CG     R VF
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +  ++  +W A+I+G V+++  E+ ++LF +M    + PN+ TY+  + AC+ L AL 
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G+++H  +    L+SD+ + +AL+ MY KCGS+ +A +IF+     D +S TV++  +A
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           Q+G  +EA +L ++M + G +  PN ++  ++L     + +L   K++H   + +    +
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFK--PNAITYVSILNACASEGALKWVKRVHRHALDAGLELD 264

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V   L+ MY+K G ++D+  VF RM  R+ VSWN MI AFA HG G +A +L+ +M+ 
Sbjct: 265 VRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQT 324

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR------ISPRAEHYACVVDMVG 506
           EG +P  + FLS+L+AC+  G     +E++K   ++HR      +         +V M  
Sbjct: 325 EGCKPDAIMFLSILNACASAG----ALEWVK---KIHRHALDSGLEVDVRVGTALVHMYS 377

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPY 564
           ++G + +AR   +RM V+ +V+ W A++   + HG   +G+ A E  +   A    P   
Sbjct: 378 KSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG---LGQDALEVFRRMTAHGVKPDRV 433

Query: 565 ILMANIYSCS 574
             +A + +CS
Sbjct: 434 TFVAVLSACS 443



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 130/278 (46%), Gaps = 9/278 (3%)

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA+ + +  ++ G+  D  M   VL        L   KQ+H  IIKS    N  V N L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           ++Y +CG L+++  VF  +  ++  SWN+MIA +  H +   A+ L+ EM  EGV+P   
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T++ +L AC+ +  +  G E + +      +         ++ M G+ G + EAR   + 
Sbjct: 131 TYMIILKACASLSALKWGKE-VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP----YILMANIYSCSGR 576
           + +  D++ W  ++GA +  G+   GK A   +   + +   P    Y+ + N  +  G 
Sbjct: 190 L-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGA 245

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
            K   +  +   + G++ +  +    ++    S  +DD
Sbjct: 246 LKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/647 (32%), Positives = 350/647 (54%), Gaps = 69/647 (10%)

Query: 70  FIKTFEPFDNQNVYN-VP-NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           ++KT    D   +++ +P   T  WN++LS + K   + +A ++FD++P  D+VSW TM+
Sbjct: 58  YVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMI 117

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
            G+   G F      F R +  G     Q +FT +L++C  ++   V K +H  V   G 
Sbjct: 118 VGYNHLGLFKSAVHAFLRMVSSGISP-TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ 176

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN-------------------------- 221
              V V N+L+  Y KCG S   + VF  MR+++                          
Sbjct: 177 SGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQ 236

Query: 222 -----VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCE 275
                +++W ++I+G          L+ F  M     + P+  T  S + AC+  ++L  
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-----------FAEELDG- 323
           G+QIH  + +  +     + +AL+ MY+K G+VE A +I E           F   LDG 
Sbjct: 297 GKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY 356

Query: 324 ---------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
                                V+ T ++VG+AQNG   +A+ LF  M++ G + +   ++
Sbjct: 357 FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLA 416

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP- 421
           AVL V     SL  GKQ+H++ I+ +  S+  V N LI MYS+ G ++D+ K+F+ +   
Sbjct: 417 AVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSY 476

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R++++W SMI + A+HG G +A+EL+E+M    ++P  +T++ +L AC+HVGLV +G  +
Sbjct: 477 RDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSY 536

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              M  VH I P + HYAC++D++GRAGLL EA +FI  MP++PDV+ W +LL +C +H 
Sbjct: 537 FNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHK 596

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
             ++ K AAEKL L  P++   Y+ +AN  S  G+W++ AK  K MK+  V KE G SW+
Sbjct: 597 YVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWV 656

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +I+ +VH F V+D +HPQ D I+ +++++ + +   G++P+   +LH
Sbjct: 657 QIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLH 703



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 93/185 (50%), Gaps = 11/185 (5%)

Query: 376 LGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
           +G+ IH+ IIK        F+ N L+N+Y K G   D+ ++F  M  + + SWN++++A 
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME-FLKSMTEVHRISP 493
           A+ GN   A  +++E+     +P  V++ +++   +H+GL    +  FL+ ++    ISP
Sbjct: 90  AKAGNLDSARRVFDEIP----QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSS--GISP 143

Query: 494 RAEHYACVVDMVGRAGLL---IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
               +  V+     A  L    +  SF+ ++     V V  +LL   +  GDS M K   
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVF 203

Query: 551 EKLFL 555
           +++ L
Sbjct: 204 DRMRL 208


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/567 (33%), Positives = 333/567 (58%), Gaps = 20/567 (3%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
            +P   V+ WN++LS Y +   ++ A ++FD+MP ++++SWN M++ +++NG  +     
Sbjct: 55  QMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRL 114

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG-NALITSY 201
           F+           +A + +I   C        ++++          E   V  N +I+ Y
Sbjct: 115 FE----------SKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGY 164

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            + G     +++F E  VR+V TWTA++SG VQN + +E  ++F     G+   NS+++ 
Sbjct: 165 AQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD----GMPEKNSVSWN 220

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           + +      + + + R+    L++     ++   + ++  Y++ G +  A   F+   + 
Sbjct: 221 AIIAGYVQCKRMDQARE----LFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR 276

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D +S   I+ G+AQ+G+ EEA+ LFV+M + G  ++ +  ++ L       +L LGKQ+H
Sbjct: 277 DSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVH 336

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             ++K+   S  +V N L+ MY KCG+++D+  VF  +  +  VSWN+MIA +ARHG G 
Sbjct: 337 GRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGK 396

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL L+E MK  G+ P DVT + +L ACSH GLV+KG E+  SMT+ + I+  ++HY C+
Sbjct: 397 EALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCM 456

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           +D++GRAG L +A++ ++ MP +PD   W ALLGA  IHG++E+G+ AA+ +F  +PD+ 
Sbjct: 457 IDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNS 516

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+L++N+Y+ SGRW +  +   RM++ GV K  G SW+E++ ++H+F V D +HP+ D
Sbjct: 517 GMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERD 576

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFILH 648
            I+  L EL   M  EGYV + + +LH
Sbjct: 577 RIYTFLEELDLKMKKEGYVSSTKLVLH 603



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 45/362 (12%)

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           + R +F +M  R+V++W A++SG  QN   +E  ++F +M       NS+++   + A  
Sbjct: 48  AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAAYV 103

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               + + R+    L++     +L   + +M  Y K   + DA  IF+   E D VS   
Sbjct: 104 QNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNT 159

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD------------TSLGL 376
           ++ G+AQNG   EA +LF +     +     MVS  +    +D             S+  
Sbjct: 160 MISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSW 219

Query: 377 GKQIHSLI-------IKSDFTSNPFVN----NGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
              I   +        +  F + P  N    N +I  Y++ GD+  +   F RM  R+S+
Sbjct: 220 NAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSI 279

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW ++IA +A+ G G +AL L+ EMK +G      TF S L  C+ +  +  G       
Sbjct: 280 SWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG------- 332

Query: 486 TEVH-RISPRAEHYACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +VH R+        C V      M  + G + +A    E +  K +V+ W  ++   + 
Sbjct: 333 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK-EVVSWNTMIAGYAR 391

Query: 540 HG 541
           HG
Sbjct: 392 HG 393



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F +M  R+ VSWN+M++ +A++G   +A E+++EM  +      +++  +L A    G 
Sbjct: 52  LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGR 107

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +       +S  +   IS     + C++    +   L++AR   +RMP + D + W  ++
Sbjct: 108 IEDARRLFESKADWELIS-----WNCMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMI 161

Query: 535 GACSIHGDSEMGKYAAEKLFLAQP 558
              + +G+       A++LF   P
Sbjct: 162 SGYAQNGEL----LEAQRLFEESP 181


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/599 (35%), Positives = 341/599 (56%), Gaps = 19/599 (3%)

Query: 44  YVD---ISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFY 99
           YVD    SRLL   A    F LG  +H   +K  +E     NVY       + +SL+  Y
Sbjct: 44  YVDGYSFSRLLKGIASAKRFDLGEQVHGLVVKGGYEC----NVY-------VGSSLVDMY 92

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC+++ +A   F ++   ++VSWN +++GF++  +    F             +D  +F
Sbjct: 93  AKCERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTF 152

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMR 218
             +L+  D      + K +H  V   G E E+T+ NA+I+SY  CG  S  ++VF G   
Sbjct: 153 APLLTLLDDPMFCNLLKQVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGG 212

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++I+W ++I+GL +++  E   +LF +MH   I  +  TY   V ACSG +    G+ 
Sbjct: 213 SKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKS 272

Query: 279 IHGILWKLALQSDLCIESALMDMYSK--CGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +HG++ K  L+    + +AL+ MY +   G ++DA  +FE  +  D VS   I+ GF+QN
Sbjct: 273 LHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQN 332

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E+A++ F  +  + IE+D    SAVL       +L LG+Q H+L  KS F SN FV 
Sbjct: 333 GLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVT 392

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           + LI MYSKCG +E++ K F +++ + N+++WN+MI  +A+HG+G  +L+L+ +M  + V
Sbjct: 393 SSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNV 452

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +   VTF ++L ACSH GL+ +G+E L SM  V++I PR EHYA  VD++GRAGL+ + +
Sbjct: 453 KLDHVTFTAILTACSHTGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVK 512

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             IE MP+ PD +V +  LG C   G+ EM    A  L   +P+    Y+ ++++YS   
Sbjct: 513 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLK 572

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           +W+E+A   K MKE GV K  G SWIEI  QV++F  +D+ H  +  I+ ++ +L + M
Sbjct: 573 KWEEKANVKKMMKERGVKKVPGWSWIEIRNQVNAFNAEDRSHSLSKEIYLMIEDLTQEM 631



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 228/454 (50%), Gaps = 32/454 (7%)

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
           ++LFD+MP RD+VSWNTM+SG+   G+ +  +  F      G Y +D  SF+ +L     
Sbjct: 1   MRLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCY-VDGYSFSRLLKGIAS 59

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           ++   + + +H LV   GYE  V VG++L+  Y KC         F E+   N ++W A+
Sbjct: 60  AKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNAL 119

Query: 229 ISGLVQNQLYEEG--------LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           I+G VQ +  +          +K  V M  G   P  LT L   M C+ L      +Q+H
Sbjct: 120 IAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAP-LLTLLDDPMFCNLL------KQVH 172

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFE 339
             + KL L+ ++ I +A++  Y+ CG V DA ++F+      D +S   ++ G +++  +
Sbjct: 173 AKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQK 232

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E A +LF +M +  IE D    + ++     +     GK +H L+IK        V+N L
Sbjct: 233 ESAFELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNAL 292

Query: 400 INMYSK--CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           I+MY +   G ++D++ +F  + P++ VSWNS++  F+++G    A++ +  ++   +E 
Sbjct: 293 ISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEV 352

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLL 511
            D  F ++L +CS +  +  G        + H ++ ++         + ++ M  + G++
Sbjct: 353 DDYAFSAVLRSCSDLATLQLGQ-------QTHALATKSSFESNEFVTSSLILMYSKCGVI 405

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
             AR   E++  K + + W A++   + HG  ++
Sbjct: 406 ENARKCFEQISSKHNTIAWNAMILGYAQHGSGQV 439


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 334/610 (54%), Gaps = 13/610 (2%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSF 98
           V  N V    LLS+ A  G    G  LH   I++ FE           +   + N++++ 
Sbjct: 274 VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFE-----------SDPTVANTIITM 322

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  + +A K+FD MP  DTV+WN +++G+++NG  D     FK  +  G  +LD  +
Sbjct: 323 YSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGV-KLDSIT 381

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F   L +  +S      K +H  +   G   +V + +AL+  YFK G      K F +  
Sbjct: 382 FASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNT 441

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           + +V   TA+ISG V N L  E L LF  +    + PN LT  S + AC+ L +L  G++
Sbjct: 442 LVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKE 501

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H  + K  L++   + S++  MY+K G ++ A+Q F      D V   +++V F+QNG 
Sbjct: 502 LHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGK 561

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E A+ LF +M  +G + D   +SA L       +L  GK++H  ++++ F S+ FV + 
Sbjct: 562 PELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVAST 621

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MYSKCG L  +  VF  M  +N VSWNS+IAA+  HG   + L+L+ EM   G++P 
Sbjct: 622 LIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPD 681

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VTFL ++ AC H GLV++G+ + + MTE + I  R EH+AC+VD+ GRAG L EA   I
Sbjct: 682 HVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTI 741

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           + MP  PD   W +LLGAC +HG+ E+ K A++ L    P++   Y+L++N+++ +G W+
Sbjct: 742 KSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWE 801

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
              K    MKE GV K  G SWI++    H F   D  HPQ+  I+ +L  LL  +   G
Sbjct: 802 SVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEIYLILKNLLLELRKHG 861

Query: 639 YVPNKRFILH 648
           YVP     LH
Sbjct: 862 YVPQPYLPLH 871



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 232/457 (50%), Gaps = 13/457 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +L  Y+ C   ++   LF  + +  ++ WN ++ GF   G FD    FF R L       
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAP- 175

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D+ +F  ++ AC       + KM+H L    G+  ++ +G++LI  Y   G     + +F
Sbjct: 176 DKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLF 235

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E+ VR+ I W  +++G V+N  +   L  F +M    + PNS++++  +  C+    + 
Sbjct: 236 DELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVR 295

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+HG++ +   +SD  + + ++ MYSKCG++ DA +IF+   + D V+   ++ G+ 
Sbjct: 296 AGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYV 355

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QNGF +EA+ LF  MV +G+++D    ++ L       SL   K++HS I++     + +
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVY 415

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + + L+++Y K GD+E + K F +    +     +MI+ +  +G   +AL L+  +  EG
Sbjct: 416 LKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEG 475

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGME-----FLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           + P  +T  S+L AC+ +  +  G E       K +  V ++       + +  M  ++G
Sbjct: 476 MVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVG------SSITYMYAKSG 529

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            L  A  F  RMPVK D + W  ++ + S +G  E+ 
Sbjct: 530 RLDLAYQFFRRMPVK-DSVCWNLMIVSFSQNGKPELA 565


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 334/608 (54%), Gaps = 17/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + +L   A E     G  +HA  +K    F           T + N+L+  YLK 
Sbjct: 204 NGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF----------TTFVCNALICMYLKS 253

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           + + +A  +FD M +RD+V+WN M+ G+   G +  GF  F R + L   +L +  F   
Sbjct: 254 EMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR-MRLAGVKLSRTVFCTA 312

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM-RVRN 221
           L  C +      +K +HC V   GYE    +  AL+ +Y KC S     K+F       N
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWTA+I G VQN   E+ + LF +M    + PN  TY S+V+A      L    Q+H 
Sbjct: 373 VVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTY-STVLAGKPSSLL---SQLHA 428

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +    + +AL+D Y K G+V ++ ++F      D V+ + +L G AQ    E+
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           AM++F+++VK G++ +    S+V+        ++  GKQIH+  +KS  ++   V++ L+
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MYSK G++E + KVF+R   R+ VSWNSMI  + +HG+  KALE+++ M+ +G+   DV
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +L AC+H GLV +G ++   M + + I  + EHY+C+VD+  RAG+  +A   I  
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W+ LL AC +H + E+GK AAEKL   QP+    Y+L++NI++ +G W+E+
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           A   K M E  V KE G SWIEI+ ++ SF+  D  HP +D ++  L EL   + D GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 641 PNKRFILH 648
           P+  ++ H
Sbjct: 789 PDTNYVFH 796



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 236/485 (48%), Gaps = 9/485 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +++  L F     + R A +LFD+ P++D   +N ++  F RN         FK     G
Sbjct: 40  LYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG 99

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +D  + +  L  C      +V + +HC     G+ E+V+VG +L+  Y K      G
Sbjct: 100 L-GVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDG 158

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F EM ++NV++WT+++SG  +N L +E + L  +M +  +NPN  T+ + + A +  
Sbjct: 159 RGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADE 218

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             +  G Q+H ++ K   +    + +AL+ MY K   V DA  +F+     D V+  +++
Sbjct: 219 SIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMI 278

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+A  GF  E  Q+F +M  AG+++   +    L +      L   KQ+H  ++K+ + 
Sbjct: 279 GGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYE 338

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEE 449
               +   L+  YSKC  ++++ K+FS   A  N V+W +MI  F ++ N  KA++L+ +
Sbjct: 339 FAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQ 398

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EGV P   T+ ++L       L     + +K+  E  ++   A     ++D   + G
Sbjct: 399 MSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE--KVPSVA---TALLDAYVKTG 453

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            ++E+      +P K D++ W A+L   +   DSE       +L + +   P  Y   + 
Sbjct: 454 NVVESARVFYSIPAK-DIVAWSAMLTGLAQTRDSEKAMEVFIQL-VKEGVKPNEYTFSSV 511

Query: 570 IYSCS 574
           I +CS
Sbjct: 512 INACS 516


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 335/608 (55%), Gaps = 17/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    +  L + A+EG    G  +H   +K            +     + NSL++ YLKC
Sbjct: 197 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKN----------GLDKTIPVSNSLINLYLKC 246

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R A  LFD   ++  V+WN+M+SG+  NG      G F  S+ L   +L ++SF  I
Sbjct: 247 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF-YSMRLNHVRLSESSFASI 305

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRN 221
           +  C   +    ++ +HC V   G+  +  +  AL+ +Y KC +     ++F E   + N
Sbjct: 306 IKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGN 365

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WTA+ISG +QN   EE + LF +M    + PN  TY   + A   +       ++H 
Sbjct: 366 VVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHA 421

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +    + +AL+D Y K G V++A ++F   +  D V+ + +L G+AQ G  E 
Sbjct: 422 QVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEA 481

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           A+++F ++ K G++ +    S++L V    T S+G GKQ H   IKS   S+  V++ L+
Sbjct: 482 AIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALL 541

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY+K G +E + +VF R   ++ VSWNSMI+ +A+HG   KAL++++EMK   V+   V
Sbjct: 542 TMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSV 601

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +  AC+H GLV +G ++   M    +I+P  EH +C+VD+  RAG L +A   I+ 
Sbjct: 602 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDN 661

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W+ +L AC +H  +E+G+ AAEK+    P+  A Y+L++N+Y+ SG W+ER
Sbjct: 662 MPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQER 721

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           AK  K M E  V KE G SWIE++ + ++F+  D+ HP  D I+  L +L   + D GY 
Sbjct: 722 AKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 781

Query: 641 PNKRFILH 648
           P+  ++L 
Sbjct: 782 PDTSYVLQ 789



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 139/502 (27%), Positives = 248/502 (49%), Gaps = 27/502 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +L +SA       G  LH   IK F   D+ +V           SL+  Y+K    ++
Sbjct: 101 SSVLKVSATLCDELFGRQLHCQCIK-FGFLDDVSV---------GTSLVDTYMKGSNFKD 150

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
              +FD+M  R+ V+W T++SG+ RN   +     F R  + G  Q +  +F   L    
Sbjct: 151 GRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEG-TQPNSFTFAAALGVLA 209

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
              +      +H +V   G ++ + V N+LI  Y KCG+    R +F +  V++V+TW +
Sbjct: 210 EEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNS 269

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG   N L  E L +F  M L  +  +  ++ S +  C+ L+ L    Q+H  + K  
Sbjct: 270 MISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYG 329

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG-VSMTVILVGFAQNGFEEEAMQLF 346
              D  I +ALM  YSKC ++ DA ++F+    L   VS T ++ GF QN  +EEA+ LF
Sbjct: 330 FVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLF 389

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M + G+  +    S +L    V +      ++H+ ++K+++  +  V   L++ Y K 
Sbjct: 390 SEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKL 445

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G ++++ KVFS +  ++ V+W++M+A +A+ G    A++++ E+   GV+P + TF S+L
Sbjct: 446 GKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSIL 505

Query: 467 HAC-SHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERM 521
           + C +    + +G +F         I  R +   CV    + M  + G +  A    +R 
Sbjct: 506 NVCAATTASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQ 560

Query: 522 PVKPDVLVWQALLGACSIHGDS 543
             K D++ W +++   + HG +
Sbjct: 561 REK-DLVSWNSMISGYAQHGQA 581



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 230/454 (50%), Gaps = 24/454 (5%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL---- 163
           A  LFD  P RD  S+ +++ GF R+G        F     LG  ++D + F+ +L    
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGM-EMDCSIFSSVLKVSA 108

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           + CD     L  + +HC     G+ ++V+VG +L+ +Y K  +   GR VF EM+ RNV+
Sbjct: 109 TLCDE----LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVV 164

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS--VMACSGLQALCEGRQIHG 281
           TWT +ISG  +N L EE L LF++M      PNS T+ ++  V+A  G+     G Q+H 
Sbjct: 165 TWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGG--RGLQVHT 222

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           ++ K  L   + + ++L+++Y KCG+V  A  +F+  E    V+   ++ G+A NG + E
Sbjct: 223 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 282

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ +F  M    + +  +  ++++ +      L   +Q+H  ++K  F  +  +   L+ 
Sbjct: 283 ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342

Query: 402 MYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            YSKC  + D++++F       N VSW +MI+ F ++    +A+ L+ EMK +GV P + 
Sbjct: 343 AYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEF 402

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T+  +L A   +       + +K+  E       A     ++D   + G + EA      
Sbjct: 403 TYSVILTALPVISPSEVHAQVVKTNYERSSTVGTA-----LLDAYVKLGKVDEAAKVFSG 457

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           +  K D++ W A+L   +  G++E    AA K+F
Sbjct: 458 IDNK-DIVAWSAMLAGYAQAGETE----AAIKIF 486



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 173/339 (51%), Gaps = 26/339 (7%)

Query: 184 LCGYEEEVTVGNALITSYFKC-GSSSSGR-----KVFGEMRVRNVITWTAVISGLVQNQL 237
            C Y  E+  GN        C G++SS R      +F +   R+  ++T+++ G  ++  
Sbjct: 20  FCIYANEL--GNLKPNFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGR 77

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCE---GRQIHGILWKLALQSDLC 293
            +E  +LF+ + HLG+    S+   SSV+  S    LC+   GRQ+H    K     D+ 
Sbjct: 78  TQEATRLFLNIQHLGMEMDCSI--FSSVLKVSA--TLCDELFGRQLHCQCIKFGFLDDVS 133

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+D Y K  + +D   +F+  +E + V+ T ++ G+A+N   EE + LF++M   G
Sbjct: 134 VGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEG 193

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
            + +    +A LGV   +   G G Q+H++++K+       V+N LIN+Y KCG++  + 
Sbjct: 194 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKAR 253

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F +   ++ V+WNSMI+ +A +G   +AL ++  M+L  V  ++ +F S++  C++  
Sbjct: 254 ILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCAN-- 311

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
                   LK +    ++      Y  V D   R  L++
Sbjct: 312 --------LKELRFTEQLHCSVVKYGFVFDQNIRTALMV 342


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/612 (35%), Positives = 336/612 (54%), Gaps = 16/612 (2%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           + +V D YV +S +LS  +       G  +HA  ++     D            + N L+
Sbjct: 224 TNVVPDRYV-VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD----------VSVVNVLI 272

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLELGFYQLD 155
            FY KC++++   KLFD M +++ +SW TM+SG+++N  FD      F     LG ++ D
Sbjct: 273 DFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS-FDWEAMKLFGEMNRLG-WKPD 330

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             + T +L++C   E     + +H        E +  V N LI  Y K       +KVF 
Sbjct: 331 GFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFD 390

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  +NVI++ A+I G    +   E L+LF +M + L  P+ LT++S +   + L AL  
Sbjct: 391 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 450

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
            +QIHG++ K  +  DL   SAL+D+YSKC  V+DA  +FE   E D V    +  G+ Q
Sbjct: 451 SKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQ 510

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +   EEA++L+  +  +  + +    +A++       SL  G+Q H+ ++K      PFV
Sbjct: 511 HLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 570

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N L++MY+KCG +E++ K+F+    R+ V WNSMI+  A+HG   +AL ++ EM  EG+
Sbjct: 571 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 630

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P  VTF+++L ACSH G V  G+    SM     I P  EHYACVV ++GR+G L EA+
Sbjct: 631 QPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFG-IKPGTEHYACVVSLLGRSGKLFEAK 689

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
            FIE+MP++P  +VW++LL AC I G+ E+GKYAAE      P     YIL++NI++  G
Sbjct: 690 EFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKG 749

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
            W +  K   RM    V KE G SWIE+  +V+ F+  D  H +AD I  VL  L++ + 
Sbjct: 750 MWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTHREAD-IGSVLDILIQHIK 808

Query: 636 DEGYVPNKRFIL 647
             GYVP+   +L
Sbjct: 809 GAGYVPDATALL 820



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 250/471 (53%), Gaps = 18/471 (3%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V  + + T + N L++   K D++ NA  +FD MP ++ ++W++MVS + + G  +    
Sbjct: 55  VSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALM 114

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSK--MIHCLVYLCGYEEEVTVGNALIT 199
            F           ++     ++ AC  ++L +V K   +H  V   G++++V VG +LI 
Sbjct: 115 VFVDLQRKSGEHPNEFVLASVIRAC--TQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLID 172

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y K G+    R VF ++  +  +TWT +I+G  +       L+LF +M    + P+   
Sbjct: 173 FYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYV 232

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S + ACS L+ L  G+QIH  + +   + D+ + + L+D Y+KC  V+   ++F+   
Sbjct: 233 VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMV 292

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             + +S T ++ G+ QN F+ EAM+LF +M + G + D    ++VL   G   +L  G+Q
Sbjct: 293 VKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQ 352

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+  IK++  S+ FV NGLI+MY+K   L D+ KVF  MA +N +S+N+MI  ++    
Sbjct: 353 VHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEK 412

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRA 495
             +ALEL+ EM++    P+ +TF+SLL        V+  +  L+   ++H    +     
Sbjct: 413 LSEALELFHEMRVRLFPPSLLTFVSLLG-------VSASLFALELSKQIHGLIIKFGVSL 465

Query: 496 EHYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + +A   ++D+  +   + +AR   E M  K D++VW A+    + H ++E
Sbjct: 466 DLFAGSALIDVYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENE 515



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 192/366 (52%), Gaps = 15/366 (4%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K+IH  + + G + +  + N LI    K     + R VF +M  +N+ITW++++S   Q 
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 236 QLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
              EE L +FV +      +PN     S + AC+ L  + +G Q+HG + +     D+ +
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 166

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            ++L+D YSK G++E+A  +F+   E   V+ T I+ G+ + G    +++LF +M +  +
Sbjct: 167 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 226

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D  +VS+VL    +   L  GKQIH+ +++     +  V N LI+ Y+KC  ++   K
Sbjct: 227 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 286

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F +M  +N +SW +MI+ + ++   ++A++L+ EM   G +P      S+L +C     
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG---- 342

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                E L+   +VH  + +A   +       ++DM  ++ LLI+A+   + M  + +V+
Sbjct: 343 ---SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVM-AEQNVI 398

Query: 529 VWQALL 534
            + A++
Sbjct: 399 SYNAMI 404



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 108/226 (47%), Gaps = 18/226 (7%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K IH  II S   S+ F+ N LIN+ SK   ++++  VF +M  +N ++W+SM++ +++ 
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 438 GNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           G   +AL ++ +++ + G  P +    S++ AC+ +G+V KG + L              
Sbjct: 107 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ-LHGFVVRSGFDQDVY 165

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               ++D   + G + EAR   +++  K  V  W  +     I G ++ G+ A      A
Sbjct: 166 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAV-TWTTI-----IAGYTKCGRSAVSLELFA 219

Query: 557 QPDS----PAPYILMANIYSCS------GRWKERAKAIKRMKEMGV 592
           Q       P  Y++ + + +CS      G  +  A  ++R  EM V
Sbjct: 220 QMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDV 265


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/586 (33%), Positives = 328/586 (55%), Gaps = 11/586 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  LHA  +K           +  +   +  + L  Y KC  + +A ++F+ +P     
Sbjct: 295 VGTQLHAHALKC----------DFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
            +N ++ G +RN +      FF+  L+ G    ++ S +   SAC   +  L  + +H L
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGL-GFNEISLSGAFSACASIKGDLDGRQLHSL 403

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                    + V N+++  Y KC + S    +F EM  R+ ++W AVI+   QN   EE 
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEET 463

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF  M    + P+  TY S + ACS  QAL  G +IH  + K  L  D  +  AL+DM
Sbjct: 464 LNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDM 523

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG +E+A +I +  E+   VS   I+ GF      E+A   F +M+K  ++ D    
Sbjct: 524 YCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTY 583

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           + VL       S+GLGKQIH  IIK +  S+ ++ + L++MYSKCG+++DS  VF +   
Sbjct: 584 AIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPN 643

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ V+WN+MI  +A+HG G +AL  +E M+LE V P   TF+S+L AC+H+G ++KG+ +
Sbjct: 644 KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY 703

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             +M   + + P+ EHY+C++D++GR+G + EA   I+ MP + D ++W+ LL  C IHG
Sbjct: 704 FNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHG 763

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+ + A   +   +P+  +  IL++NIY+ +G W + ++  K M+   + KE G SWI
Sbjct: 764 NIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWI 823

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           E++ +VH+F+V +K HP+ + I+ +L+ LL  M   GY+P+  F++
Sbjct: 824 EVKDEVHAFLVGNKTHPRYEEIYKILSVLLDEMKWIGYIPDIDFLI 869



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 256/483 (53%), Gaps = 29/483 (6%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K FE    ++V       + +N+++S Y    +M  A + F D P RD VSWN+M+SGFL
Sbjct: 99  KVFEKMSQRDV-------ISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFL 151

Query: 132 RNGEFDMGFGFF---KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE 188
           +NGE       F    RS E+GF   DQ +F ++L AC   E   +   +H L+   G+ 
Sbjct: 152 QNGECRKSIDVFLDMGRSEEVGF---DQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFY 208

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           ++V  G+AL+  Y KC       K+F E+ V+N + W+A+I+G VQN  +  GL+LF +M
Sbjct: 209 KDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEM 268

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
               I  +   Y S   +C+GL AL  G Q+H    K    SD+ + +A +DMY+KCGS+
Sbjct: 269 QKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSL 328

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
            DA +IF    +        I+VG  +N    EA+Q F  ++K+G+  +   +S   G F
Sbjct: 329 ADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLS---GAF 385

Query: 369 GVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
               S+     G+Q+HSL +KS   SN  V N +++MY KC  L ++  +F  M  R++V
Sbjct: 386 SACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAV 445

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----F 481
           SWN++IAA  ++GN  + L L+  M    +EP   T+ S+L ACS    +N GME     
Sbjct: 446 SWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRI 505

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +KS   +      A     ++DM  + G++ EA+   +R+  +  ++ W A++   ++  
Sbjct: 506 IKSGLGLDSFVGGA-----LIDMYCKCGMIEEAKKIHDRIE-QQTMVSWNAIIAGFTLLK 559

Query: 542 DSE 544
            SE
Sbjct: 560 HSE 562



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 251/474 (52%), Gaps = 9/474 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V  ++LL  Y KC ++ +++K+F ++P+++ V W+ +++G ++N E  +G   FK   ++
Sbjct: 212 VTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKV 271

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   + Q+ +  +  +C       V   +H     C +  ++TVG A +  Y KCGS + 
Sbjct: 272 GI-GVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLAD 330

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +++F  +   ++  + A+I G V+N+   E L+ F  +    +  N ++   +  AC+ 
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACAS 390

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++   +GRQ+H +  K  L+S++C+ ++++DMY KC ++ +A  +F+  E  D VS   +
Sbjct: 391 IKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAV 450

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +    QNG EEE + LF  M++  +E D     +VL       +L  G +IH+ IIKS  
Sbjct: 451 IAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGL 510

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + FV   LI+MY KCG +E++ K+  R+  +  VSWN++IA F    +   A   + E
Sbjct: 511 GLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYE 570

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGR 507
           M    V+P + T+  +L AC+++  V  G +      ++ ++   ++ Y  + +VDM  +
Sbjct: 571 MLKMSVKPDNFTYAIVLDACANLASVGLGKQI---HGQIIKLELHSDVYITSTLVDMYSK 627

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPD 559
            G + ++    E+ P K D + W A++   + HG  E  +G +   +L   +P+
Sbjct: 628 CGNMQDSALVFEKAPNK-DFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPN 680



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 205/436 (47%), Gaps = 36/436 (8%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF--- 214
           +F+ I+  C         K  H  + + G+  +V + N L+  Y +C   +   KVF   
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 215 ------------------GEMRV----------RNVITWTAVISGLVQNQLYEEGLKLFV 246
                             GEM +          R+V++W +++SG +QN    + + +F+
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 247 KMHLG-LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            M     +  +  T+   + ACS L+    G Q+HG++ ++    D+   SAL+DMY+KC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             ++D+ +IF      + V  + I+ G  QN      ++LF +M K GI +  ++ ++V 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                 ++L +G Q+H+  +K DF S+  V    ++MY+KCG L D+ ++F+ +   +  
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
            +N++I    R+  GF+AL+ ++ +   G+   +++      AC+ +     G + L S+
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQ-LHSL 403

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE- 544
           +    +         ++DM G+   L EA    + M  + D + W A++ A   +G+ E 
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEME-RRDAVSWNAVIAAHEQNGNEEE 462

Query: 545 -MGKYAAEKLFLAQPD 559
            +  +A+      +PD
Sbjct: 463 TLNLFASMLRLRMEPD 478



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 155/346 (44%), Gaps = 53/346 (15%)

Query: 237 LYEEGLKLFVKMHLGLINPNSL-------TYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           LY + L++F    +  +  N         T+   +  CS   +L  G+Q H  +      
Sbjct: 16  LYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFI 75

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFE------------------------FAEEL---- 321
            D+ I + LM MY +C  +  A+++FE                         A E     
Sbjct: 76  PDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDT 135

Query: 322 ---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLG 377
              D VS   +L GF QNG   +++ +F+ M ++  +  D    + VL    V    GLG
Sbjct: 136 PKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLG 195

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
            Q+H LI++  F  +    + L++MY+KC  L+DS+K+FS +  +N V W+++IA   ++
Sbjct: 196 IQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQN 255

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                 LEL++EM+  G+  +   + S+  +C+       G+  LK  T++H  + + + 
Sbjct: 256 DEHILGLELFKEMQKVGIGVSQSIYASVFRSCA-------GLSALKVGTQLHAHALKCDF 308

Query: 498 YA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
            +        +DM  + G L +A+     +P K  +  + A++  C
Sbjct: 309 GSDITVGTATLDMYAKCGSLADAQRIFNSLP-KHSLQCYNAIIVGC 353


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/596 (34%), Positives = 339/596 (56%), Gaps = 31/596 (5%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR------------------NAVKLFD 113
           + F+   N+ V+       +WN L++ Y K    R                  +A KLFD
Sbjct: 157 RIFDKVANEKVF-------LWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 114 DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL 173
           ++  RD +SWN+M+SG++ NG  + G   F++ L LG    D A+   +++ C  + + L
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI-NTDLATMVSVVAGCSNTGMLL 268

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           + + +H       + +E+T+ N L+  Y K G+ +S  +VF  M  R+V++WT++I+G  
Sbjct: 269 LGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYA 328

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           +  L +  ++LF +M    I+P+  T  + + AC+    L  G+ +H  + +  +QSDL 
Sbjct: 329 REGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLF 388

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +ALMDMY+KCGS+ DA  +F   +  D VS   ++ G+++N    EA+ LFV+M    
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM---Q 445

Query: 354 IEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
               PN ++   +L       +L  G++IH  I+++ F+ +  V N L++MY KCG L  
Sbjct: 446 YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGL 505

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MIA +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 506 ARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSH 565

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+++G  F   M     I P++EHYAC+VD++ RAG L +A  FI+ MP++PD  +W 
Sbjct: 566 SGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWG 625

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
           ALL  C I+ D ++ +  AE +F  +P++   Y+L+ANIY+ + +W+E  K  +R+   G
Sbjct: 626 ALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRG 685

Query: 592 VDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + K  G SWIEI+ +VH FV  D  HP A+ I  +L +    M +EG+ P  R+ L
Sbjct: 686 LRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYAL 741



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/459 (28%), Positives = 217/459 (47%), Gaps = 64/459 (13%)

Query: 140 FGFFKRSLEL----GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            G  +R++EL        L+  ++  +L  C   +     + IH ++     E +  +G+
Sbjct: 81  LGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGS 140

Query: 196 ALITSYFKCGSSSSG--------------------------------------------- 210
            L+  Y  CG    G                                             
Sbjct: 141 KLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR 200

Query: 211 ----RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RK+F E+  R+VI+W ++ISG V N L E+GL LF +M L  IN +  T +S V  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS    L  GR +HG   K +   +L + + L+DMYSK G++  A Q+FE   E   VS 
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           T ++ G+A+ G  + +++LF +M K GI  D   ++ +L        L  GK +H+ I +
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKE 380

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+ FV+N L++MY+KCG + D+  VFS M  ++ VSWN+MI  ++++    +AL L
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVV 502
           + EM+    +P  +T   +L AC+ +  + +G E     L++   + R    A     +V
Sbjct: 441 FVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANA-----LV 494

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           DM  + G L  AR   + +P K D++ W  ++    +HG
Sbjct: 495 DMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGYGMHG 532



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 82/337 (24%)

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F + G    AM+L  +  K  +E+      +VL +     S+  G++IHS+I  +D   +
Sbjct: 78  FCELGNLRRAMELINQSPKPDLEL--RTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVD 135

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMA-------------------------------- 420
             + + L+ MY  CGDL +  ++F ++A                                
Sbjct: 136 GVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE 195

Query: 421 -----------------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
                             R+ +SWNSMI+ +  +G   K L+L+E+M L G+     T +
Sbjct: 196 LGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMV 255

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S++  CS+ G++  G   L                 C++DM  ++G L  A    E M  
Sbjct: 256 SVVAGCSNTGMLLLG-RALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGE 314

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYSCSGRWKER 580
           +  V+ W +++   +  G S+M    + +LF        SP  + +   +++C+      
Sbjct: 315 R-SVVSWTSMIAGYAREGLSDM----SVRLFHEMEKEGISPDIFTITTILHACAC----- 364

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
                          TG+  +E  K VH+++ ++KM 
Sbjct: 365 ---------------TGL--LENGKDVHNYIKENKMQ 384


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 334/612 (54%), Gaps = 15/612 (2%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           + +V D YV +S +LS  +       G  +HA  ++     D            + N L+
Sbjct: 132 TNVVPDRYV-VSSVLSACSMLEFLEGGKQIHAYVLRRGTEMD----------VSVVNVLI 180

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLELGFYQLD 155
            FY KC++++   KLFD M +++ +SW TM+SG+++N  FD      F     LG ++ D
Sbjct: 181 DFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS-FDWEAMKLFGEMNRLG-WKPD 238

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             + T +L++C   E     + +H        E    V N LI  Y K       +KVF 
Sbjct: 239 GFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFD 298

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  +NVI++ A+I G    +   E L+LF +M + L  P+ LT++S +   + L AL  
Sbjct: 299 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALEL 358

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
            +QIHG++ K  +  DL   SAL+D+YSKC  V+DA  +FE   E D V    +  G+ Q
Sbjct: 359 SKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQ 418

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +   EEA++L+  +  +  + +    +A++       SL  G+Q H+ ++K      PFV
Sbjct: 419 HLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFV 478

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N L++MY+KCG +E++ K+F+    R+ V WNSMI+  A+HG   +AL ++ EM  EG+
Sbjct: 479 TNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGI 538

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P  VTF+++L ACSH G V  G+    SM     I P  EHYACVV ++GR+G L EA+
Sbjct: 539 QPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFG-IKPGTEHYACVVSLLGRSGKLFEAK 597

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
            FIE+MP++P  +VW++LL AC I G+ E+GKYAAE      P     YIL++NI++  G
Sbjct: 598 EFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKG 657

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
            W +  K   RM    V KE G SWIE+  +V+ F+     H +AD I  VL  L++ + 
Sbjct: 658 MWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLDILIQHIK 717

Query: 636 DEGYVPNKRFIL 647
             GYVP+   +L
Sbjct: 718 GAGYVPDATALL 729



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 157/536 (29%), Positives = 271/536 (50%), Gaps = 36/536 (6%)

Query: 26  TKIIQDPTSSTSKLVLDNYVDISR-------------LLSISAKEGHFHLGPSLHASFIK 72
           TK ++D   S   L++  +VD+ R             ++    + G    G  LH   ++
Sbjct: 8   TKDMEDEGYSEEALMV--FVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVR 65

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
           +   FD Q+VY       +  SL+ FY K   +  A  +FD +  +  V+W T+++G+ +
Sbjct: 66  S--GFD-QDVY-------VGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTK 115

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
            G   +    F +  E      D+   + +LSAC   E     K IH  V   G E +V+
Sbjct: 116 CGRSXVSLELFAQMRETNVVP-DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVS 174

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           V N LI  Y KC    +GRK+F +M V+N+I+WT +ISG +QN    E +KLF +M+   
Sbjct: 175 VVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLG 234

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
             P+     S + +C  L+AL +GRQ+H    K  L+S+  +++ L+DMY+K   + DA 
Sbjct: 235 WKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAK 294

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           ++F+   E + +S   ++ G++      EA++LF +M    + + P  +   + + GV  
Sbjct: 295 KVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM---RVRLFPPSLLTFVSLLGVSA 351

Query: 373 S---LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           S   L L KQIH LIIK   + + F  + LI++YSKC  ++D+  VF  M  ++ V WN+
Sbjct: 352 SLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNA 411

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           M   + +H    +AL+LY  ++    +P + TF +L+ A S++  +  G +F   + ++ 
Sbjct: 412 MFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 471

Query: 490 -RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               P   +   +VDM  + G + EAR       +  DV+ W +++   + HG++E
Sbjct: 472 LDFCPFVTN--ALVDMYAKCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAE 524


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 325/584 (55%), Gaps = 13/584 (2%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F L   LHA  +K+    D           +  N+L+S Y K  QM +A+ +F  + ++D
Sbjct: 215 FKLARQLHAHVLKSEFGAD----------LIAQNALISMYTKFSQMADAINVFSRIIIKD 264

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            +SW +M++GF + G        F+  L    YQ ++  F    SAC +       + IH
Sbjct: 265 LISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIH 324

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L    G   ++  G +L   Y KCG   S R VF  +   +++ W A+I+G       +
Sbjct: 325 GLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAK 384

Query: 240 EGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E    F +M H GL+ PN +T LS + ACS    L  G Q+H  + K+    D+ + ++L
Sbjct: 385 ESSSFFSQMRHTGLV-PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSL 443

Query: 299 MDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           + MYSKC ++ DA Q+FE    + D VS   +L    Q     E ++L   M  + I+ D
Sbjct: 444 LSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD 503

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++ VL   G   S  +G QIH  I+KS    +  V+N LINMY+KCG LE + K+F 
Sbjct: 504 HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFD 563

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +   + +SW+S+I  +A+ G G +A EL+  M+  GV+P ++TF+ +L ACSH+G+V +
Sbjct: 564 SIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEE 623

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G++  ++M E +RISP  EH +C+VD++ RAG L  A  FI++MP  PDV+VW+ LL AC
Sbjct: 624 GLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAAC 683

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            +HG+ E+GK AAE +    P + A  +++ NI++ SG WK+ A+    M+ M V K  G
Sbjct: 684 KVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPG 743

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            SWIEI+ +VH F+ +D +HP+   I+ +L EL+  ++D+G  P
Sbjct: 744 QSWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQILDDGCDP 787



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 224/451 (49%), Gaps = 13/451 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N +LS Y KC  ++ A  +FD MP+++ VSW +M+SG+ R GE D     + + L  
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    D  +F  I+ +C   +   +++ +H  V    +  ++   NALI+ Y K    + 
Sbjct: 194 GHIP-DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMAD 252

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
              VF  + ++++I+W ++I+G  Q     E L  F +M    +  PN   + S+  ACS
Sbjct: 253 AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L     GRQIHG+  K  L SDL    +L DMY+KCG +E A  +F   E+ D V+   
Sbjct: 313 KLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNA 372

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ GFA     +E+   F +M   G+  +   V ++L        L  G Q+HS I+K  
Sbjct: 373 IIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMG 432

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELY 447
           F  +  V N L++MYSKC +L D+++VF  +  + + VSWN+++ A  +     + L L 
Sbjct: 433 FNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVD 503
           + M    ++P  VT  ++L +   +     G +     +KS   +      A     +++
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA-----LIN 547

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           M  + G L  AR   + +   PD++ W +L+
Sbjct: 548 MYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 200/390 (51%), Gaps = 12/390 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L   ++T +++AC         + IH  +  C Y+ ++ + N +++ Y KCGS    R +
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNM 155

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M ++NV++WT++ISG  +    +  + L+V+M      P+  T+ S V +CSGL   
Sbjct: 156 FDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDF 215

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
              RQ+H  + K    +DL  ++AL+ MY+K   + DA  +F      D +S   ++ GF
Sbjct: 216 KLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGF 275

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG-VFGVDTSL---GLGKQIHSLIIKSDF 389
           +Q G+E EA+  F +M+   +   PN    V G  F   + L     G+QIH L IK   
Sbjct: 276 SQLGYELEALCHFREMLSQSV-YQPN--EFVFGSAFSACSKLLEPDCGRQIHGLCIKFGL 332

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ F    L +MY+KCG LE +  VF  +   + V+WN++IA FA   N  ++   + +
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQ 392

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGR 507
           M+  G+ P DVT LSLL ACS   ++N G++     + + ++    +   C  ++ M  +
Sbjct: 393 MRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV---HSYIVKMGFNLDIPVCNSLLSMYSK 449

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              L +A    E +  K D++ W  LL AC
Sbjct: 450 CSNLNDALQVFEDIGNKADIVSWNTLLTAC 479


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 332/635 (52%), Gaps = 47/635 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L++  +     LG  LHA  IK              N T + N+L+  Y KC  + + +
Sbjct: 195 ILTVCIRLLDLELGCQLHAIVIKM----------GFLNYTFVSNALMGLYGKCGYLDSVL 244

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD+MP RD  SWNT++S  ++   ++  F  F+    +  +++D  + + IL A  R 
Sbjct: 245 QLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA-RG 303

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT--- 226
             S+V + IH  V   G+E  ++V NALI  Y KCGS      +F +MRVR+VITWT   
Sbjct: 304 LASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMI 363

Query: 227 ----------------------------AVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
                                       A++SG  QN    + L  F +M    +     
Sbjct: 364 TAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDF 423

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T    + AC  L      +QIHG + K    S+ CIE+AL+DM ++CG + DA ++F   
Sbjct: 424 TLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQG 483

Query: 319 EELDGVSM--TVILVGFAQNGFEEEAMQLFVK-MVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                 S+  T ++ G+A+N   EEA+ LF +  ++  + +D    +AVLGV G      
Sbjct: 484 SFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHE 543

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           +GKQIH   +KS F S+  V N +I MYSKC +++D+IKVF+ M   + VSWN +IA   
Sbjct: 544 MGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHL 603

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG--LVNKGMEFLKSMTEVHRISP 493
            H  G +AL ++ +M+  G++P  VTF+ ++ A  H    LV+       SM  ++ I P
Sbjct: 604 LHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDP 663

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             EHY  +V ++G  GLL EA   I +MP++P+  VW+ALL AC IH ++ +GK AA+ L
Sbjct: 664 TVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHL 723

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P  P+ YIL++N+YS  GRW       + M+  G  K  G SWI  E +VHSF   
Sbjct: 724 LAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYAR 783

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           DK HPQA  IH  L  L+   +  GYVP+  F+LH
Sbjct: 784 DKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLH 818



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 148/589 (25%), Positives = 263/589 (44%), Gaps = 62/589 (10%)

Query: 28  IIQDPTSSTSKLVLDNYVDISR--------LLSISAKEGHFHLGPSLHASFIKTFEPFDN 79
           +   P  S    +L N+  +S         LL +S +     L  ++HAS  K  E    
Sbjct: 66  LTSHPPLSNQPALLSNFPSVSNDTVNDHYYLLDLSVRYDDVELIKAVHASIFKLAEDIH- 124

Query: 80  QNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
                      + N+L+  YLK   + NA K+F  +   + VS+  M+SGF ++      
Sbjct: 125 -----------LANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQA 173

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
              F R    G  +L++ SF  IL+ C R     +   +H +V   G+     V NAL+ 
Sbjct: 174 MEIFFRMRSSGI-ELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMG 232

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSL 258
            Y KCG   S  ++F EM  R++ +W  VIS +V+  +YE   +LF  M  +     +  
Sbjct: 233 LYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHF 292

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-------- 310
           T  + ++A  GL ++  GR+IH  + K+  +S++ + +AL+  Y+KCGS++         
Sbjct: 293 TLSTILVAARGLASMV-GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKM 351

Query: 311 -----------------------AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                                  A ++F+     + +S   IL GF QNG   +A+  F 
Sbjct: 352 RVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFC 411

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +MV+ G+E+    ++ VL   G+     + KQIH  I+K  F SN  +   L++M ++CG
Sbjct: 412 RMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCG 471

Query: 408 DLEDSIKV--FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLS 464
            + D+ K+      +   S+ W SMI  +AR+    +A+ L+ + +LEG    D V   +
Sbjct: 472 RMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTA 531

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L  C  +     G +      +   +S      + ++ M  +   + +A      MP  
Sbjct: 532 VLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNS-IITMYSKCSNMDDAIKVFNVMPAH 590

Query: 525 PDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            D++ W  L+    +H  GD  +  ++  +    +PD+   ++L+ + Y
Sbjct: 591 -DIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDT-VTFVLIISAY 637



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 38/357 (10%)

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           + +H  ++KLA   D+ + +AL+  Y K G V +A+++F      + VS T ++ GFA++
Sbjct: 110 KAVHASIFKLA--EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKS 167

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
             E +AM++F +M  +GIE++     A+L V      L LG Q+H+++IK  F +  FV+
Sbjct: 168 NRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVS 227

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGV 455
           N L+ +Y KCG L+  +++F  M  R+  SWN++I++  +     +A EL+ +M +++G 
Sbjct: 228 NALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGF 287

Query: 456 EPTDVTFLSLLHACSHVGLVNK-GMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGL 510
                T  ++L A    GL +  G E        H I    E    V++ + R     G 
Sbjct: 288 RIDHFTLSTILVAAR--GLASMVGREI-----HAHVIKIGFESNISVINALIRFYTKCGS 340

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN- 569
           +    +  E+M V+ DV+ W  ++ A    G +++     +K+       PA   +  N 
Sbjct: 341 IKHVVALFEKMRVR-DVITWTEMITAYMEFGLTDLALEVFDKM-------PARNSISYNA 392

Query: 570 IYSCSGRWKERAKAIK---RMKEMGVDKE----TGI-------SWIEIEKQVHSFVV 612
           I S   +  E +KA+    RM E GV+      TG+          +I KQ+H F++
Sbjct: 393 ILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFIL 449


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 320/557 (57%), Gaps = 2/557 (0%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            I N+L+  Y KC  + +A  +FD M  RD +SWN M+ G  +NG     F  F +  + G
Sbjct: 460  IGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEG 519

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                     +++ +      L  V++ +H      G   +  VG+A I  Y +CGS    
Sbjct: 520  LVPDSTTYLSLLNTHGSTDALEWVNE-VHKHAVETGLISDFRVGSAFIHMYIRCGSIDDA 578

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            R +F ++ VR+V TW A+I G  Q +   E L LF++M      P++ T+++ + A    
Sbjct: 579  RLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDE 638

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +AL   +++H       L  DL + +AL+  YSKCG+V+ A Q+F+   E +  + T+++
Sbjct: 639  EALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMI 697

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             G AQ+G   +A   F++M++ GI  D     ++L       +L   K++H+  + +   
Sbjct: 698  GGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLV 757

Query: 391  SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            S+  V N L++MY+KCG ++D+  VF  M  R+  SW  MI   A+HG G +AL+ + +M
Sbjct: 758  SDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKM 817

Query: 451  KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            K EG +P   +++++L ACSH GLV++G     SMT+ + I P  EHY C+VD++GRAGL
Sbjct: 818  KSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGL 877

Query: 511  LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
            L EA  FI  MP++PD   W ALLGAC  +G+ EM ++AA++    +P S + Y+L++NI
Sbjct: 878  LEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNI 937

Query: 571  YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            Y+ +G+W+++      M+  G+ KE G SWIE++ ++HSFVV D  HP++  I+  L +L
Sbjct: 938  YAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDL 997

Query: 631  LRLMIDEGYVPNKRFIL 647
            +  +  +GYVP+ R +L
Sbjct: 998  IERLKAKGYVPDTRLVL 1014



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 153/501 (30%), Positives = 254/501 (50%), Gaps = 24/501 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           +YV+I   L    K+    L   +H   IK+      QN+Y       + N LL  Y++C
Sbjct: 120 SYVNI---LQRCLKQEDILLAKQVHVCIIKSGM---EQNLY-------VANKLLRVYIRC 166

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLELGFYQLDQASFTI 161
            +++ A ++FD +  ++   W TM+ G+   G  +     + K   E G  Q ++ ++  
Sbjct: 167 GRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECG--QPNEITYLS 224

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL AC         K IH  +   G++ +V V  AL+  Y KCGS    + +F +M  RN
Sbjct: 225 ILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERN 284

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+WT +I GL      +E   LF++M      PNS TY+S + A +   AL   +++H 
Sbjct: 285 VISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHS 344

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
                 L  DL + +AL+ MY+K GS++DA  +F+   E D  S TV++ G AQ+G  +E
Sbjct: 345 HAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQE 404

Query: 342 AMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLG--KQIHSLIIKSDFTSNPFVNN 397
           A  LF++M + G    PN+ +  ++L    + ++  L   K +H    ++ F S+  + N
Sbjct: 405 AFSLFLQMQRNGCL--PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGN 462

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MY+KCG ++D+  VF  M  R+ +SWN+M+   A++G G +A  ++ +M+ EG+ P
Sbjct: 463 ALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVP 522

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
              T+LSLL+       +    E  K   E   IS      A  + M  R G + +AR  
Sbjct: 523 DSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSA-FIHMYIRCGSIDDARLL 581

Query: 518 IERMPVKPDVLVWQALLGACS 538
            +++ V+  V  W A++G  +
Sbjct: 582 FDKLSVR-HVTTWNAMIGGAA 601



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/462 (30%), Positives = 224/462 (48%), Gaps = 24/462 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y K   + +A  +FD M  RD  SW  M+ G  ++G     F  F +    G
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 151 FYQLDQASFTIILSACDRSELSLVS-----KMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
                  + T  LS  + S ++  S     K++H      G+  ++ +GNALI  Y KCG
Sbjct: 417 CL----PNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S    R VF  M  R+VI+W A++ GL QN    E   +F++M    + P+S TYLS + 
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
                 AL    ++H    +  L SD  + SA + MY +CGS++DA  +F+        +
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTT 592

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G AQ     EA+ LF++M + G   D      +L     + +L   K++HS   
Sbjct: 593 WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHAT 652

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
            +    +  V N L++ YSKCG+++ + +VF  M  RN  +W  MI   A+HG G  A  
Sbjct: 653 DAGLV-DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFS 711

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------ 499
            + +M  EG+ P   T++S+L AC+  G     +E++K   EVH  +  A   +      
Sbjct: 712 HFLQMLREGIVPDATTYVSILSACASTG----ALEWVK---EVHNHAVSAGLVSDLRVGN 764

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +V M  + G + +ARS  + M V+ DV  W  ++G  + HG
Sbjct: 765 ALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHG 805



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 207/394 (52%), Gaps = 12/394 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  S+  IL  C + E  L++K +H  +   G E+ + V N L+  Y +CG     R+V
Sbjct: 116 IDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQV 175

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F ++  +N+  WT +I G  +    E+ ++++ KM      PN +TYLS + AC     L
Sbjct: 176 FDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNL 235

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G++IH  + +   QSD+ +E+AL++MY KCGS+EDA  IF+   E + +S TV++ G 
Sbjct: 236 KWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGL 295

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           A  G  +EA  LF++M + G   +     ++L       +L   K++HS  + +    + 
Sbjct: 296 AHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDL 355

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N L++MY+K G ++D+  VF  M  R+  SW  MI   A+HG G +A  L+ +M+  
Sbjct: 356 RVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRN 415

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGR 507
           G  P   T+LS+L+A +        +E++K    VH+ +  A   +       ++ M  +
Sbjct: 416 GCLPNLTTYLSILNASAIAS--TSALEWVKV---VHKHAEEAGFISDLRIGNALIHMYAK 470

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            G + +AR   + M    DV+ W A++G  + +G
Sbjct: 471 CGSIDDARLVFDGM-CDRDVISWNAMMGGLAQNG 503



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 228/460 (49%), Gaps = 24/460 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +L++ Y+KC  + +A  +FD M  R+ +SW  M+ G    G     F  F +    GF 
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                  +I+ +      L  V K +H      G   ++ VGNAL+  Y K GS    R 
Sbjct: 318 PNSYTYVSILNANASAGALEWV-KEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARV 376

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS--SVMACSGL 270
           VF  M  R++ +WT +I GL Q+   +E   LF++M      PN  TYLS  +  A +  
Sbjct: 377 VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL   + +H    +    SDL I +AL+ MY+KCGS++DA  +F+   + D +S   ++
Sbjct: 437 SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMM 496

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQNG   EA  +F++M + G+  D     ++L   G   +L    ++H   +++   
Sbjct: 497 GGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLI 556

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V +  I+MY +CG ++D+  +F +++ R+  +WN+MI   A+   G +AL L+ +M
Sbjct: 557 SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQM 616

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM-VGRA- 508
           + EG  P   TF+++L A       N   E L+ + EVH  +  A     +VD+ VG A 
Sbjct: 617 QREGFIPDATTFINILSA-------NVDEEALEWVKEVHSHATDAG----LVDLRVGNAL 665

Query: 509 -------GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                  G +  A+   + M V+ +V  W  ++G  + HG
Sbjct: 666 VHTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHG 704


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 332/635 (52%), Gaps = 47/635 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L++  +     LG  LHA  IK              N T + N+L+  Y KC  + + +
Sbjct: 177 ILTVCIRLLDLELGCQLHAIVIKM----------GFLNYTFVSNALMGLYGKCGYLDSVL 226

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD+MP RD  SWNT++S  ++   ++  F  F+    +  +++D  + + IL A  R 
Sbjct: 227 QLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA-RG 285

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT--- 226
             S+V + IH  V   G+E  ++V NALI  Y KCGS      +F +MRVR+VITWT   
Sbjct: 286 LASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMI 345

Query: 227 ----------------------------AVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
                                       A++SG  QN    + L  F +M    +     
Sbjct: 346 TAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDF 405

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T    + AC  L      +QIHG + K    S+ CIE+AL+DM ++CG + DA ++F   
Sbjct: 406 TLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQG 465

Query: 319 EELDGVSM--TVILVGFAQNGFEEEAMQLFVK-MVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                 S+  T ++ G+A+N   EEA+ LF +  ++  + +D    +AVLGV G      
Sbjct: 466 SFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHE 525

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           +GKQIH   +KS F S+  V N +I MYSKC +++D+IKVF+ M   + VSWN +IA   
Sbjct: 526 MGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHL 585

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG--LVNKGMEFLKSMTEVHRISP 493
            H  G +AL ++ +M+  G++P  VTF+ ++ A  H    LV+       SM  ++ I P
Sbjct: 586 LHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDP 645

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             EHY  +V ++G  GLL EA   I +MP++P+  VW+ALL AC IH ++ +GK AA+ L
Sbjct: 646 TVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHL 705

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P  P+ YIL++N+YS  GRW       + M+  G  K  G SWI  E +VHSF   
Sbjct: 706 LAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYAR 765

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           DK HPQA  IH  L  L+   +  GYVP+  F+LH
Sbjct: 766 DKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLH 800



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 148/585 (25%), Positives = 262/585 (44%), Gaps = 62/585 (10%)

Query: 32  PTSSTSKLVLDNYVDISR--------LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY 83
           P  S    +L N+  +S         LL +S +     L  ++HAS  K  E        
Sbjct: 52  PPLSNQPALLSNFPSVSNDTVNDHYYLLDLSVRYDDVELIKAVHASIFKLAEDIH----- 106

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
                  + N+L+  YLK   + NA K+F  +   + VS+  M+SGF ++         F
Sbjct: 107 -------LANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIF 159

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            R    G  +L++ SF  IL+ C R     +   +H +V   G+     V NAL+  Y K
Sbjct: 160 FRMRSSGI-ELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGK 218

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLS 262
           CG   S  ++F EM  R++ +W  VIS +V+  +YE   +LF  M  +     +  T  +
Sbjct: 219 CGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLST 278

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED------------ 310
            ++A  GL ++  GR+IH  + K+  +S++ + +AL+  Y+KCGS++             
Sbjct: 279 ILVAARGLASMV-GREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRD 337

Query: 311 -------------------AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
                              A ++F+     + +S   IL GF QNG   +A+  F +MV+
Sbjct: 338 VITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVE 397

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            G+E+    ++ VL   G+     + KQIH  I+K  F SN  +   L++M ++CG + D
Sbjct: 398 EGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMAD 457

Query: 412 SIKV--FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHA 468
           + K+      +   S+ W SMI  +AR+    +A+ L+ + +LEG    D V   ++L  
Sbjct: 458 AQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGV 517

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           C  +     G +      +   +S      + ++ M  +   + +A      MP   D++
Sbjct: 518 CGTLAFHEMGKQIHCHALKSGFLSDLGVGNS-IITMYSKCSNMDDAIKVFNVMPAH-DIV 575

Query: 529 VWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            W  L+    +H  GD  +  ++  +    +PD+   ++L+ + Y
Sbjct: 576 SWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDT-VTFVLIISAY 619



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 178/357 (49%), Gaps = 38/357 (10%)

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           + +H  ++KLA   D+ + +AL+  Y K G V +A+++F      + VS T ++ GFA++
Sbjct: 92  KAVHASIFKLA--EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKS 149

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
             E +AM++F +M  +GIE++     A+L V      L LG Q+H+++IK  F +  FV+
Sbjct: 150 NRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVS 209

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGV 455
           N L+ +Y KCG L+  +++F  M  R+  SWN++I++  +     +A EL+ +M +++G 
Sbjct: 210 NALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGF 269

Query: 456 EPTDVTFLSLLHACSHVGLVNK-GMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGL 510
                T  ++L A    GL +  G E        H I    E    V++ + R     G 
Sbjct: 270 RIDHFTLSTILVAAR--GLASMVGREI-----HAHVIKIGFESNISVINALIRFYTKCGS 322

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN- 569
           +    +  E+M V+ DV+ W  ++ A    G +++     +K+       PA   +  N 
Sbjct: 323 IKHVVALFEKMRVR-DVITWTEMITAYMEFGLTDLALEVFDKM-------PARNSISYNA 374

Query: 570 IYSCSGRWKERAKAIK---RMKEMGVDKE----TGI-------SWIEIEKQVHSFVV 612
           I S   +  E +KA+    RM E GV+      TG+          +I KQ+H F++
Sbjct: 375 ILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFIL 431


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/611 (33%), Positives = 341/611 (55%), Gaps = 15/611 (2%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           L +++Y  +  +L +  +    +LG  LHA+ +K+    + Q            N+LL  
Sbjct: 262 LSMNSYTTVG-VLQVCTELAQLNLGRELHAALLKSGSEVNIQ-----------CNALLVM 309

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC ++ +A+++F ++  +D +SWN+M+S +++NG +     F    L  GF Q D A 
Sbjct: 310 YTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGF-QPDHAC 368

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
              + SA       L  K +H        + +  VGN L+  Y KC        VF  MR
Sbjct: 369 IVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMR 428

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           +++ I+WT +I+   Q+  + E L++F +     I  + +   S + ACSGL+ +   +Q
Sbjct: 429 IKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQ 488

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H    +  L  DL +++ ++D+Y +CG V  + ++FE  E+ D V+ T ++  +A +G 
Sbjct: 489 LHCYAIRNGLL-DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGL 547

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             EA+ LF +M    ++ D   + ++LG  G  +SL  GK++H  +I+ +F     + + 
Sbjct: 548 LNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSS 607

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MYS CG L  ++KVF+ +  ++ V W +MI A   HG+G +A++L++ M   GV P 
Sbjct: 608 LVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPD 667

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            V+FL+LL+ACSH  LVN+G  +L  M   +R+ P  EHYACVVD++GR+G   EA  FI
Sbjct: 668 HVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFI 727

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           + MP+KP  +VW +LLGAC +H + E+   AA +L   +PD+P  Y+L++N+++  G+W 
Sbjct: 728 KSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWN 787

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL-RLMIDE 637
              +   R+ E G+ K+   SWIEI   VH+F   D  H  A+ I+  LAE+  RL  + 
Sbjct: 788 NAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEG 847

Query: 638 GYVPNKRFILH 648
           GY  + R +LH
Sbjct: 848 GYTEDTRSVLH 858



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 266/538 (49%), Gaps = 35/538 (6%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ +L  S  EG    G  +H   +K          + +  +T + N+L++ Y KC  + 
Sbjct: 167 LASVLKASGVEGDGRCGCEVHGLAVK----------HGLDRSTFVANALIAMYAKCGILD 216

Query: 107 NAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           +A+++F+ M   RD  SWN+M+SG L+NG F      F R ++     ++  +   +L  
Sbjct: 217 SAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLF-RGMQRAVLSMNSYTTVGVLQV 275

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C       + + +H  +   G E  +   NAL+  Y KCG   S  +VF E+  ++ I+W
Sbjct: 276 CTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISW 334

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            +++S  VQN LY E ++   +M  G   P+    +S   A   L  L  G+++H    K
Sbjct: 335 NSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIK 394

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             L SD  + + LMDMY KC  +E +  +F+     D +S T I+  +AQ+    EA+++
Sbjct: 395 QRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEI 454

Query: 346 FVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F +  K GI++DP M+ ++L    G++T L L KQ+H   I++    +  V N +I++Y 
Sbjct: 455 FREAQKEGIKVDPMMIGSILEACSGLETIL-LAKQLHCYAIRNGLL-DLVVKNRIIDIYG 512

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           +CG++  S+K+F  +  ++ V+W SMI  +A  G   +AL L+ EM+   V+P  V  +S
Sbjct: 513 ECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVS 572

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFI 518
           +L A         G+  L    EVH    R   +      + +VDM    G L  A    
Sbjct: 573 ILGAIG-------GLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVF 625

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
             +  K D+++W A++ A  +HG    GK A +  K  L    +P     +A +Y+CS
Sbjct: 626 NAVKCK-DMVLWTAMINATGMHGH---GKQAIDLFKRMLQTGVTPDHVSFLALLYACS 679



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 250/535 (46%), Gaps = 48/535 (8%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ- 153
           LL  Y KC ++ +A  LFD M  R   SWN ++  +L +G      G + R++ L     
Sbjct: 101 LLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVY-RAMRLSAASG 159

Query: 154 --LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D  +   +L A            +H L    G +    V NALI  Y KCG   S  
Sbjct: 160 VAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAM 219

Query: 212 KVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           +VF  M   R+V +W ++ISG +QN ++ + L LF  M   +++ NS T +  +  C+ L
Sbjct: 220 RVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTEL 279

Query: 271 QALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             L  GR++H  L K    S++ I+ +AL+ MY+KCG V+ A ++F   +E D +S   +
Sbjct: 280 AQLNLGRELHAALLKSG--SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSM 337

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L  + QNG   EA++   +M++ G + D   + ++    G    L  GK++H+  IK   
Sbjct: 338 LSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRL 397

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  V N L++MY KC  +E S  VF RM  ++ +SW ++I  +A+     +ALE++ E
Sbjct: 398 DSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFRE 457

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV-----DM 504
            + EG++   +   S+L ACS       G+E +    ++H  + R      VV     D+
Sbjct: 458 AQKEGIKVDPMMIGSILEACS-------GLETILLAKQLHCYAIRNGLLDLVVKNRIIDI 510

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPA 562
            G  G +  +    E +  K D++ W +++   +  G  +  +  +A  +    QPDS A
Sbjct: 511 YGECGEVYHSLKMFETVEQK-DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVA 569

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
              ++  I                          G+S +   K+VH F++    H
Sbjct: 570 LVSILGAI-------------------------GGLSSLAKGKEVHGFLIRRNFH 599



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 271 QALCEGRQIHG-ILWKLALQSDLC-IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           +A+ +G Q+H   +   +L+ D   + + L+ MY KCG V DA  +F+        S   
Sbjct: 72  KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNA 131

Query: 329 ILVGFAQNGFEEEAMQLFVKM---VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           ++  +  +G   EA+ ++  M     +G+  D   +++VL   GV+     G ++H L +
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKAL 444
           K     + FV N LI MY+KCG L+ +++VF  M   R+  SWNSMI+   ++G   +AL
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVH 489
           +L+  M+   +     T + +L  C+ +  +N G E     LKS +EV+
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN 300



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           VL +     ++  G Q+H+  + +      + F+   L+ MY KCG + D+  +F  M+ 
Sbjct: 64  VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKL---EGVEPTDVTFLSLLHACSHVGLVNKG 478
           R   SWN++I A+   G+  +AL +Y  M+L    GV P   T  S+L A    G    G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E +  +   H +         ++ M  + G+L  A    E M    DV  W +++  C 
Sbjct: 184 CE-VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCL 242

Query: 539 IHG 541
            +G
Sbjct: 243 QNG 245


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/599 (33%), Positives = 320/599 (53%), Gaps = 12/599 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS+ A   H  LG  +H + ++          +       + NS ++ Y+K   +  A 
Sbjct: 303 ILSVVASLNHLELGKQIHGAVVR----------FGWDQFVSVANSAINMYVKAGSVNYAR 352

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++F  M   D +SWNT++SG  R+G  +     F   L  G    DQ + T +L AC   
Sbjct: 353 RMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLP-DQFTITSVLRACSSL 411

Query: 170 ELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           E S  V + +H      G   +  V  ALI  Y K G       +F      ++ +W A+
Sbjct: 412 EESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAM 471

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           + G   +  Y E L+LF  MH      + +T+ ++  A   L  L +G+QIH ++ K+  
Sbjct: 472 MHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF 531

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
             DL + S ++DMY KCG ++ A ++F      D V+ T ++ G  +NG EE+A+  + +
Sbjct: 532 HYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQ 591

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M  AG++ D    + ++    + T+L  GKQIH+ I+K +   +PFV   L++MY+KCG+
Sbjct: 592 MRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGN 651

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +ED+  +F RM  R+   WN+MI   A+HGN  +AL  + EMK  GV P  VTF+ +L A
Sbjct: 652 IEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSA 711

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           CSH GL +   +   SM + + + P  EHY+C+VD + RAG + EA   +  MP +    
Sbjct: 712 CSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASAT 771

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           +++ LL AC + GD E G+  AEKLF   P   A Y+L++NIY+ + +W+    A   MK
Sbjct: 772 MYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMK 831

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            + V KE G SWI+++ +VH FV  D+ H + D I+  +  +++ + +EGYVP+  F L
Sbjct: 832 RVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFAL 890



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 132/563 (23%), Positives = 228/563 (40%), Gaps = 86/563 (15%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFD------MGFGF 142
           + N+L++ Y KC  + +A KLFD  P   RD V++N +++ +   GE          F  
Sbjct: 50  VTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHI 109

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F R L        + + + +   C        S+ +       G + +V V  AL+  Y 
Sbjct: 110 F-RLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYA 168

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           K       R +F  M VR+V+ W  ++   V+    +E L LF   H   + P+ ++  +
Sbjct: 169 KFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRT 228

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +M               G+  K   + +L    A             A ++F   ++ D
Sbjct: 229 ILM---------------GVGKKTVFERELEQVRAY------------ATKLFVCDDDSD 261

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
                  L  + Q G   EA+  F  M+K+ +  D      +L V      L LGKQIH 
Sbjct: 262 VTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHG 321

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            +++  +     V N  INMY K G +  + ++F +M   + +SWN++I+  AR G    
Sbjct: 322 AVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEEC 381

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           +L L+ ++   G+ P   T  S+L ACS             S+ E + +  +   + C +
Sbjct: 382 SLRLFIDLLRSGLLPDQFTITSVLRACS-------------SLEESYCVGRQV--HTCAL 426

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SP 561
               +AG+++             D  V  AL+   S  G  E     AE LF  Q     
Sbjct: 427 ----KAGIVL-------------DSFVSTALIDVYSKGGKME----EAELLFHNQDGFDL 465

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW------------IEIEKQVHS 609
           A +  M + ++ S  ++E  +    M E G +K   I++            ++  KQ+H+
Sbjct: 466 ASWNAMMHGFTVSDNYREALRLFSLMHERG-EKADQITFANAAKAAGCLVRLQQGKQIHA 524

Query: 610 FVVDDKMHPQADTIHGVLAELLR 632
            V+  + H     I G+L   L+
Sbjct: 525 VVIKMRFHYDLFVISGILDMYLK 547



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/402 (21%), Positives = 177/402 (44%), Gaps = 54/402 (13%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG--E 216
           F+I+  A   S+L ++ K  H ++   G   +  V N LIT Y KCGS  S RK+F    
Sbjct: 17  FSILRHAIADSDL-ILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 217 MRVRNVITWTAVISGLVQN-QLYE-----EGLKLF--VKMHLGLINPNSLTYLSSVMACS 268
              R+++T+ A+++      +L++     E   +F  ++  + L   ++L+ L  +    
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  +  E  Q + +  K+ LQ D+ +  AL+++Y+K   + +A  +F+     D V   V
Sbjct: 136 GSPSASEALQGYAV--KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNV 193

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  + + G  +E + LF    ++G+   P+ VS    + GV       +++  +     
Sbjct: 194 MMKAYVEMGAGDEVLGLFSAFHRSGLR--PDCVSVRTILMGVGKKTVFERELEQV---RA 248

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           + +  FV          C D  D               WN  ++++ + G G++A++ + 
Sbjct: 249 YATKLFV----------CDDDSD------------VTVWNKTLSSYLQAGEGWEAVDCFR 286

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACV----V 502
           +M    V    +T++ +L   + +  +  G        ++H    R   + +  V    +
Sbjct: 287 DMIKSRVPCDSLTYIVILSVVASLNHLELG-------KQIHGAVVRFGWDQFVSVANSAI 339

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +M  +AG +  AR    +M  + D++ W  ++  C+  G  E
Sbjct: 340 NMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGCARSGLEE 380



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 12/199 (6%)

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF--SRMAPRNSVSWN 428
           D+ L LGK+ H++I+ S    + +V N LI MY+KCG L  + K+F  +  + R+ V++N
Sbjct: 26  DSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYN 85

Query: 429 SMIAAFARHG------NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           +++AA+A  G         +A  ++  ++   +  T  T   L   C   G  +   E L
Sbjct: 86  AILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSAS-EAL 144

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI--H 540
           +       +         +V++  +   + EAR   +RMPV+ DV++W  ++ A      
Sbjct: 145 QGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKAYVEMGA 203

Query: 541 GDSEMGKYAAEKLFLAQPD 559
           GD  +G ++A      +PD
Sbjct: 204 GDEVLGLFSAFHRSGLRPD 222


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 331/565 (58%), Gaps = 10/565 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N L++ Y KC  + +A ++F  M  +D+VSWN+M++G  +NG F       +R   + 
Sbjct: 71  IGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCF---IEAVERYQSMR 127

Query: 151 FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            +++   SFT+I  LS+C   + + + + IH      G +  V+V NAL+T Y + G  +
Sbjct: 128 RHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 187

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             RK+F  M   + ++W ++I  L  ++    E +  F+         N +T+ S + A 
Sbjct: 188 ECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAV 247

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSM 326
           S L     G+QIHG+  K  +  +   E+AL+  Y KCG ++   +IF   +E  D V+ 
Sbjct: 248 SSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTW 307

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+  N    +A+ L   M++ G  +D  M + VL  F    +L  G ++H+  ++
Sbjct: 308 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 367

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+  V + L++MYSKCG L+ +++ F+ M  RNS SWNSMI+ +ARHG G +AL+L
Sbjct: 368 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 427

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +  MKL+G  P D VTF+ +L ACSH GL+ +G +  +SM++ + ++PR EH++C+ D++
Sbjct: 428 FANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLL 487

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAP 563
           GRAG L +   FI++MPVKP+VL+W+ +LGAC       +E+GK AAE LF  +P++   
Sbjct: 488 GRAGELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 547

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L+ N+Y+  GRW++  KA K+MK+  V KE G SW+ ++  VH FV  DK HP  D I
Sbjct: 548 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVI 607

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L EL R M D GYVP   F L+
Sbjct: 608 YKKLKELNRKMRDAGYVPQTGFALY 632



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 126/409 (30%), Positives = 205/409 (50%), Gaps = 18/409 (4%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GN L+  Y KCGS +  R+VF  M  ++ ++W ++I+GL QN  + E ++ +  M  
Sbjct: 69  VGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRR 128

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             I P S T +SS+ +C+ L+    G+QIHG   KL +  ++ + +ALM +Y++ G + +
Sbjct: 129 HEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNE 188

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
             +IF    E D VS   I+   A +     EA+  F+  ++AG +++    S+VL    
Sbjct: 189 CRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVS 248

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWN 428
             +   LGKQIH L +K +        N LI  Y KCG+++   K+FSRM+  R+ V+WN
Sbjct: 249 SLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWN 308

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           SMI+ +  +    KAL+L   M   G       + ++L A + V  + +GM       EV
Sbjct: 309 SMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGM-------EV 361

Query: 489 HRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           H  S RA  E    V    VDM  + G L  A  F   MPV+ +   W +++   + HG 
Sbjct: 362 HACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGYARHGQ 420

Query: 543 SE--MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
            E  +  +A  KL    P     ++ + +  S +G  +E  K  + M +
Sbjct: 421 GEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSD 469



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 5/197 (2%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFG 141
           YN+ +     N+L++ Y KC +M    K+F  M   RD V+WN+M+SG++ N        
Sbjct: 266 YNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALD 325

Query: 142 FFKRSLELGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
                L+ G  +LD   +  +LSA    + L    ++  C V  C  E +V VG+AL+  
Sbjct: 326 LVWFMLQTG-QRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVVVGSALVDM 383

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLT 259
           Y KCG      + F  M VRN  +W ++ISG  ++   EE LKLF  M L G   P+ +T
Sbjct: 384 YSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVT 443

Query: 260 YLSSVMACSGLQALCEG 276
           ++  + ACS    L EG
Sbjct: 444 FVGVLSACSHAGLLEEG 460



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 25/319 (7%)

Query: 231 GLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQ---ALCEGRQIHGILWKL 286
           GLV+ +  EE  KLF+ M+  + ++P S   L S      L     L +GR++HG +   
Sbjct: 3   GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITT 62

Query: 287 ALQSDLC-IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
            L   +  I + L++MY+KCGS+ DA ++F F  E D VS   ++ G  QNG   EA++ 
Sbjct: 63  GLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVER 122

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---------LGKQIHSLIIKSDFTSNPFVN 396
           +  M +   EI P       G F + +SL          LG+QIH   +K     N  V+
Sbjct: 123 YQSMRRH--EILP-------GSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVS 173

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF-KALELYEEMKLEGV 455
           N L+ +Y++ G L +  K+FS M   + VSWNS+I A A       +A+  +      G 
Sbjct: 174 NALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQ 233

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +   +TF S+L A S +     G + +  +   + I+  A     ++   G+ G +    
Sbjct: 234 KLNRITFSSVLSAVSSLSFGELGKQ-IHGLALKYNIADEATTENALIACYGKCGEMDGCE 292

Query: 516 SFIERMPVKPDVLVWQALL 534
               RM  + D + W +++
Sbjct: 293 KIFSRMSERRDDVTWNSMI 311


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 320/559 (57%), Gaps = 13/559 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL---- 149
           ++++ Y KC Q+ +A K+F+ MP RD VSWNT+V+G+ +NG       F +R++++    
Sbjct: 182 AVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNG-------FARRAVQVVLQM 234

Query: 150 --GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                + D  +   +L A    +   + + IH   +  G+E  V V  A++ +YFKCGS 
Sbjct: 235 QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSV 294

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            S R VF  M  RNV++W  +I G  QN   EE    F+KM    + P +++ + ++ AC
Sbjct: 295 RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHAC 354

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  GR +H +L +  +  D+ + ++L+ MYSKC  V+ A  +F   +    V+  
Sbjct: 355 ANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWN 414

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +++G+AQNG   EA+ LF +M    I+ D   + +V+      +     K IH L I++
Sbjct: 415 AMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRT 474

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               N FV   LI+ ++KCG ++ + K+F  M  R+ ++WN+MI  +  +G+G +AL+L+
Sbjct: 475 LMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLF 534

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+   V+P ++TFLS++ ACSH GLV +GM + +SM E + + P  +HY  +VD++GR
Sbjct: 535 NEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGR 594

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L +A  FI+ MPVKP + V  A+LGAC IH + E+G+  A++LF   PD    ++L+
Sbjct: 595 AGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLL 654

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           AN+Y+ +  W + A+    M++ G+ K  G S +E+  +VH+F      HPQ+  I+  L
Sbjct: 655 ANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYL 714

Query: 628 AELLRLMIDEGYVPNKRFI 646
             L   M   GYVP+   I
Sbjct: 715 ETLGDEMKAAGYVPDTNSI 733



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 163/301 (54%), Gaps = 6/301 (1%)

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           L+   G+  E      LI+ + K  S +   +VF  +  +  + +  ++ G  +N    +
Sbjct: 66  LIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRD 125

Query: 241 GLKLFVKMHLGLINP--NSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLALQSDLCIESA 297
            ++ + +M    + P     TYL   +  SG    L  GR+IHG++     QS+L   +A
Sbjct: 126 AVRFYERMRCDEVMPVVYDFTYL---LQLSGENLDLRRGREIHGMVITNGFQSNLFAMTA 182

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++++Y+KC  +EDA+++FE   + D VS   ++ G+AQNGF   A+Q+ ++M +AG + D
Sbjct: 183 VVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPD 242

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              + +VL       +L +G+ IH    ++ F     V   +++ Y KCG +  +  VF 
Sbjct: 243 SITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFK 302

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M+ RN VSWN+MI  +A++G   +A   + +M  EGVEPT+V+ +  LHAC+++G + +
Sbjct: 303 GMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLER 362

Query: 478 G 478
           G
Sbjct: 363 G 363



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 6/245 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+S Y KC ++  A  +F ++  +  V+WN M+ G+ +NG  +     F    E+ 
Sbjct: 381 VMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLF---CEMQ 437

Query: 151 FYQLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            + +   SFT++      ++LS+   +K IH L      ++ V V  ALI ++ KCG+  
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           + RK+F  M+ R+VITW A+I G   N    E L LF +M  G + PN +T+LS + ACS
Sbjct: 498 TARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557

Query: 269 GLQALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
               + EG      +     L+  +    A++D+  + G ++DAW+  +      G+++ 
Sbjct: 558 HSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVL 617

Query: 328 VILVG 332
             ++G
Sbjct: 618 GAMLG 622


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 316/559 (56%), Gaps = 2/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++  ++C  + +A + F  +  RD V +N +++   ++G     F  + R    G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              L++ ++  IL+AC  S+     K+IH  +   G+  +V +GNALI+ Y +CG     
Sbjct: 326 V-ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F  M  R++I+W A+I+G  + +   E ++L+ +M    + P  +T+L  + AC+  
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            A  +G+ IH  + +  ++S+  + +ALM+MY +CGS+ +A  +FE  +  D +S   ++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQ+G  E A +LF +M    +E D    ++VL       +L LGKQIH  I +S   
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  + N LINMY +CG L+D+  VF  +  R+ +SW +MI   A  G   KA+EL+ +M
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 451 KLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           + EG  P D  TF S+L AC+H GLV +G +   SM   + + P  EHY C+V ++GRA 
Sbjct: 625 QNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRAR 684

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
              EA + I +MP  PD  VW+ LLGAC IHG+  + ++AA         +PA YIL++N
Sbjct: 685 RFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSN 744

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+ +GRW + AK  + M+  G+ KE G SWIE++  +H F+  D+ HP+   I+  L  
Sbjct: 745 VYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKR 804

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M + GY P+ + +LH
Sbjct: 805 LSVEMEEAGYFPDTQHVLH 823



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 246/462 (53%), Gaps = 7/462 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+KC  + +A ++F +MP RD +SWN+++S + + G     F  F+     GF 
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ ++  IL+AC         K IH  +   GY+ +  V N+L++ Y KCG     R+
Sbjct: 126 P-NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  R+V+++  ++    Q    +E L LF +M    I+P+ +TY++ + A +    
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L EG++IH +  +  L SD+ + +AL+ M  +CG V+ A Q F+   + D V    ++  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G   EA + + +M   G+ ++     ++L       +L  GK IHS I +   +S+
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N LI+MY++CGDL  + ++F  M  R+ +SWN++IA +AR  +  +A+ LY++M+ 
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV+P  VTFL LL AC++      G    + +     I         +++M  R G L+
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLM 483

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           EA++  E    + DV+ W +++   + HG  E     A KLF
Sbjct: 484 EAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE----TAYKLF 520



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 240/480 (50%), Gaps = 13/480 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +H+  IK     D +          + NSLLS Y KC  +  A ++F  +  RD VS
Sbjct: 147 GKKIHSQIIKAGYQRDPR----------VQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +NTM+  + +        G F +    G    D+ ++  +L A     +    K IH L 
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   ++ VG AL+T   +CG   S ++ F  +  R+V+ + A+I+ L Q+    E  
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAF 315

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + + +M    +  N  TYLS + ACS  +AL  G+ IH  + +    SD+ I +AL+ MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++CG +  A ++F    + D +S   I+ G+A+     EAM+L+ +M   G++       
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            +L      ++   GK IH  I++S   SN  + N L+NMY +CG L ++  VF     R
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR 495

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + +SWNSMIA  A+HG+   A +L++EM+ E +EP ++TF S+L  C +   +  G +  
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIH 555

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             +TE   +         +++M  R G L +AR+    +  + DV+ W A++G C+  G+
Sbjct: 556 GRITESG-LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQGE 613



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/384 (31%), Positives = 195/384 (50%), Gaps = 2/384 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+A++  +L  C R  L   +K IH  +   G   ++ + N LI  Y KC S     +
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  R+VI+W ++IS   Q    ++  +LF +M      PN +TY+S + AC     
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G++IH  + K   Q D  ++++L+ MY KCG +  A Q+F      D VS   +L  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ  + +E + LF +M   GI  D      +L  F   + L  GK+IH L ++    S+
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V   L+ M  +CGD++ + + F  +A R+ V +N++IAA A+HG+  +A E Y  M+ 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV     T+LS+L+ACS    +  G + + S       S   +    ++ M  R G L 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           +AR     MP K D++ W A++  
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAG 405


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/608 (34%), Positives = 334/608 (54%), Gaps = 17/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + +L   A E     G  +HA  +K    F           T + N+L+  YLK 
Sbjct: 204 NGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF----------TTFVCNALICMYLKS 253

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           + + +A  +FD M +RD+V+WN M+ G+   G +  GF  F R + L   +L +  F   
Sbjct: 254 EMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR-MRLAGVKLSRTVFCTA 312

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM-RVRN 221
           L  C +      +K +HC V   GYE    +  AL+ +Y KC S     K+F       N
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWTA+I G VQN   ++ + LF +M    + PN  TY S+V+A      L    Q+H 
Sbjct: 373 VVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTY-STVLAGKPSSLL---SQLHA 428

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +    + +AL+D Y K G+V ++ ++F      D V+ + +L G AQ    E+
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           AM++F+++VK G++ +    S+V+        ++  GKQIH+  +KS  ++   V++ L+
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MYSK G++E + KVF+R   R+ VSWNSMI  + +HG+  KALE+++ M+ +G+   DV
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +L AC+H GLV +G ++   M + + I  + EHY+C+VD+  RAG+  +A   I  
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W+ LL AC +H + E+GK AAEKL   QP+    Y+L++NI++ +G W+E+
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           A   K M E  V KE G SWIEI+ ++ SF+  D  HP +D ++  L EL   + D GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 641 PNKRFILH 648
           P+  ++ H
Sbjct: 789 PDTNYVFH 796



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/485 (26%), Positives = 236/485 (48%), Gaps = 9/485 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +++  L F     + R A +LFD+ P++D   +N ++  F RN         FK     G
Sbjct: 40  LYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG 99

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +D  + +  L  C      +V + +HC     G+ E+V+VG +L+  Y K      G
Sbjct: 100 L-GVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDG 158

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F EM ++NV++WT+++SG  +N L +E + L  +M +  +NPN  T+ + + A +  
Sbjct: 159 RGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADE 218

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             +  G Q+H ++ K   +    + +AL+ MY K   V DA  +F+     D V+  +++
Sbjct: 219 SIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMI 278

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+A  GF  E  Q+F +M  AG+++   +    L +      L   KQ+H  ++K+ + 
Sbjct: 279 GGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYE 338

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEE 449
               +   L+  YSKC  ++++ K+FS   A  N V+W +MI  F ++ N  KA++L+ +
Sbjct: 339 FAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQ 398

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EGV P   T+ ++L       L     + +K+  E  ++   A     ++D   + G
Sbjct: 399 MSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE--KVPSVA---TALLDAYVKTG 453

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            ++E+      +P K D++ W A+L   +   DSE       +L + +   P  Y   + 
Sbjct: 454 NVVESARVFYSIPAK-DIVAWSAMLTGLAQTRDSEKAMEVFIQL-VKEGVKPNEYTFSSV 511

Query: 570 IYSCS 574
           I +CS
Sbjct: 512 INACS 516


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 311/558 (55%), Gaps = 11/558 (1%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S++L      G    G S+H   +K           N+    +IWN LLS YLK   + +
Sbjct: 63  SQILQECTDAGDLRTGMSVHTYLVK----------LNINGFILIWNKLLSLYLKFGHIHH 112

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A +LFD MP RD VS+NTM+S  +RN    +        ++    + +  +F  ++ ACD
Sbjct: 113 AHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACD 172

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                 +  + H     CG      VG++L+  Y K        K F E+   ++++W  
Sbjct: 173 GLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNI 232

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I G  +N   E  +++F +M  G +  +  T  S +  CS    L  G Q HG   KL 
Sbjct: 233 MIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLG 292

Query: 288 LQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
           L  +  I +AL+ MYSKC   V    +IF    E + +S T ++ GF QN   EEA+ LF
Sbjct: 293 LAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLF 352

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M++ G+  +    S++L V+G   +L  GKQIH+ IIKS F  +  VNN LI+MYSKC
Sbjct: 353 KEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKC 412

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G LED+  VF +M   + VS  +MI ++ +HG G +ALE+  EMK EG+ P  VTFL  L
Sbjct: 413 GSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCL 472

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
           +ACSH GLV +G+   K M E H + P+ EH+ACVVDM+GRAG L EA +FI+ M ++ D
Sbjct: 473 YACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESD 532

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           VLVW+ LLGAC +HG+  +G+ +A+K+   QP    PY+L+ANIY+  G W+++    ++
Sbjct: 533 VLVWETLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREK 592

Query: 587 MKEMGVDKETGISWIEIE 604
           +   G+ K+ G SW+ +E
Sbjct: 593 LVSHGLKKQVGCSWVALE 610



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 204/437 (46%), Gaps = 11/437 (2%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F+ IL  C  +        +H  +        + + N L++ Y K G      ++F  M 
Sbjct: 62  FSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMP 121

Query: 219 VRNVITWTAVISGLVQNQLYEEGL-KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            R+V+++  +IS  V+N      L  L+ KM    + PN +T+   + AC GL AL    
Sbjct: 122 RRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRG 181

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
             H    +  L S+  + S+L+D Y+K   +EDA + F    ELD VS  +++ G A+N 
Sbjct: 182 IFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNN 241

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
            +E A+++F +M+K  + +D   +++++        L  G Q H   IK        + N
Sbjct: 242 SKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYN 301

Query: 398 GLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            LI MYSKC   +   +K+F  ++  N +SW +MI+ F ++    +A+ L++EM   GV 
Sbjct: 302 ALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVR 361

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
             D +F S+L    ++  + +G +    + +       + + A ++DM  + G L +A  
Sbjct: 362 ENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNA-LIDMYSKCGSLEDAHL 420

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCS 574
              +M  K DV+    ++ +   HG    GK A E L   + +   P     +  +Y+CS
Sbjct: 421 VFMKMG-KHDVVSCTTMIMSYGQHGK---GKEALEILAEMKSEGLVPDGVTFLGCLYACS 476

Query: 575 --GRWKERAKAIKRMKE 589
             G  +E  +  K M E
Sbjct: 477 HGGLVEEGVRVFKIMIE 493


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/606 (34%), Positives = 333/606 (54%), Gaps = 50/606 (8%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           + F+    +N+Y        WNS+++   K   +  A  LF  MP RD  +WN+MVSGF 
Sbjct: 76  QVFDKMPQRNIYT-------WNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFA 128

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK--MIHCLVYLCGYEE 189
           ++   +    +F    + GF  L++ SF  +LSAC  S L+ ++K   +H L+    +  
Sbjct: 129 QHDRCEEALCYFAMMHKEGFV-LNEYSFASVLSAC--SGLNDMNKGVQVHSLIAKSPFLS 185

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V +G+AL+  Y KCG+ +  ++VF EM  RNV++W ++I+   QN    E L +F  M 
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSV 308
              + P+ +T  S + AC+ L A+  G+++HG ++    L++D+ + +A +DMY+KC  +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305

Query: 309 EDAWQIFE-------FAE------------------------ELDGVSMTVILVGFAQNG 337
           ++A  IF+        AE                        E + VS   ++ G+ QNG
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT------S 391
             EEA+ LF  + +  +       + +L        L LG Q H  ++K  F        
Sbjct: 366 ENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEED 425

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV N LI+MY KCG +E+   VF +M  R+ VSWN+MI  FA++G G +ALEL+ EM 
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G +P  +T + +L AC H G V +G  +  SMT    ++P  +HY C+VD++GRAG L
Sbjct: 486 ESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFL 545

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA+S IE MP++PD ++W +LL AC +H +  +GKY AEKL   +P +  PY+L++N+Y
Sbjct: 546 EEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMY 605

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +  G+W++     K M++ GV K+ G SWI+I+   H F+V DK HP+   IH +L  L+
Sbjct: 606 AELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILI 665

Query: 632 RLMIDE 637
             M  E
Sbjct: 666 AEMRPE 671



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 207/403 (51%), Gaps = 65/403 (16%)

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITS 200
           F K + +L  +  D + F  +L +C +S+LS +  + +H  V   G+  E+ + N LI +
Sbjct: 6   FLKLAADLSSFT-DSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDA 64

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV--------------------------- 233
           Y KCGS   GR+VF +M  RN+ TW +V++GL                            
Sbjct: 65  YSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMV 124

Query: 234 ----QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
               Q+   EE L  F  MH      N  ++ S + ACSGL  + +G Q+H ++ K    
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL 184

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           SD+ I SAL+DMYSKCG+V DA ++F+   + + VS   ++  F QNG   EA+ +F  M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV-NNGLINMYSKCGD 408
           +++ +E D   +++V+      +++ +G+++H  ++K+D   N  + +N  ++MY+KC  
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 409 LE------DSIKV-------------------------FSRMAPRNSVSWNSMIAAFARH 437
           ++      DS+ +                         F++MA RN VSWN++IA + ++
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQN 364

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           G   +AL L+  +K E V PT  +F ++L AC+ +  ++ GM+
Sbjct: 365 GENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQ 407



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 31/279 (11%)

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-------------------- 316
           R +H  + K    +++ I++ L+D YSKCGS+ED  Q+F+                    
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 317 -FAEELDGV----------SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            F +E D +          +   ++ GFAQ+   EEA+  F  M K G  ++    ++VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                   +  G Q+HSLI KS F S+ ++ + L++MYSKCG++ D+ +VF  M  RN V
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWNS+I  F ++G   +AL++++ M    VEP +VT  S++ AC+ +  +  G E    +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
            +  ++          VDM  +   + EAR   + MP++
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIR 318



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 45/194 (23%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-------------- 423
           + +H+ +IKS F++  F+ N LI+ YSKCG LED  +VF +M  RN              
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 424 -----------------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
                              +WNSM++ FA+H    +AL  +  M  EG    + +F S+L
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIER 520
            ACS +  +NKG+       +VH +  ++   + V      VDM  + G + +A+   + 
Sbjct: 160 SACSGLNDMNKGV-------QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDE 212

Query: 521 MPVKPDVLVWQALL 534
           M  + +V+ W +L+
Sbjct: 213 MGDR-NVVSWNSLI 225


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 335/596 (56%), Gaps = 12/596 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LL + A       G ++HA                +    +   +L + Y KC +  +
Sbjct: 229 TSLLKLCAARADLATGRAVHAQLA----------ARGLSPEALAATALANMYAKCRRPGD 278

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD MP RD V+WN +V+G+ RNG  +   G   R  E    + D  +   +L AC 
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            ++     + +H      G++E+V V  A++  Y KCG+  S RKVF  M+ RN ++W A
Sbjct: 339 DAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNA 398

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I G  +N    E L LF +M    ++   ++ L+++ AC  L  L EGR++H +L ++ 
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L+S++ + +AL+ MY KC   + A Q+F+       VS   +++G  QNG  E+A++LF 
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518

Query: 348 KMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           +M    ++ D   +VS +  +  +   L   + IH   I+     + +V   LI+MY+KC
Sbjct: 519 RMQLENVKPDSFTLVSIIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKC 577

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  +  +F+    R+ ++WN+MI  +  HG+G  A+EL+EEMK  G  P + TFLS+L
Sbjct: 578 GRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVL 637

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G E+  SM E + + P  EHY  +VD++GRAG L EA SFI++MP++P 
Sbjct: 638 SACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPG 697

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + V+ A+LGAC +H + E+ + +A+++F  +P+    ++L+ANIY+ +  WK+ A+    
Sbjct: 698 ISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTA 757

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           M++ G+ K  G S ++++ ++H+F      H QA  I+  LA+L+  +   GYVP+
Sbjct: 758 MEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPD 813



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 197/396 (49%), Gaps = 8/396 (2%)

Query: 158 SFTIILSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +FT +L  C  R++L+   + +H  +   G   E     AL   Y KC      R+VF  
Sbjct: 227 TFTSLLKLCAARADLA-TGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDR 285

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCE 275
           M  R+ + W A+++G  +N L E  + + V+M       P+++T +S + AC+  QAL  
Sbjct: 286 MPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGA 345

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
            R++H    +      + + +A++D+Y KCG+V+ A ++F+  ++ + VS   ++ G+A+
Sbjct: 346 CREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAE 405

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG   EA+ LF +MV  G+++    V A L   G    L  G+++H L+++    SN  V
Sbjct: 406 NGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNV 465

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N LI MY KC   + + +VF  +  +  VSWN+MI    ++G+   A+ L+  M+LE V
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENV 525

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P   T +S++ A + +    +          +H +         ++DM  + G +  AR
Sbjct: 526 KPDSFTLVSIIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTALIDMYAKCGRVSIAR 584

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           S       +  V+ W A++     HG    GK A E
Sbjct: 585 SLFNSARDR-HVITWNAMIHGYGSHGS---GKVAVE 616



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 157/309 (50%), Gaps = 5/309 (1%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P   T+ S +  C+    L  GR +H  L    L  +    +AL +MY+KC    DA ++
Sbjct: 223 PVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRV 282

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTS 373
           F+     D V+   ++ G+A+NG  E A+ + V+M +  G   D   + +VL       +
Sbjct: 283 FDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQA 342

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           LG  +++H+  ++  F     V+  ++++Y KCG ++ + KVF  M  RNSVSWN+MI  
Sbjct: 343 LGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKG 402

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A +G+  +AL L++ M  EGV+ TDV+ L+ LHAC  +G +++G    + +  +  +  
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG-LES 461

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAE 551
                  ++ M  +      A    + +  K  V  W A++  C+ +G SE  +  ++  
Sbjct: 462 NVNVMNALITMYCKCKRTDLAAQVFDELGYKTRV-SWNAMILGCTQNGSSEDAVRLFSRM 520

Query: 552 KLFLAQPDS 560
           +L   +PDS
Sbjct: 521 QLENVKPDS 529


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/605 (33%), Positives = 340/605 (56%), Gaps = 17/605 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           +  +L + +  G    G  +H   +K  FE     NV+ V         L+  Y KC  +
Sbjct: 165 LGSVLRVCSSLGLIQTGEMIHGFVVKNGFEG----NVFVV-------TGLVDMYAKCKCV 213

Query: 106 RNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
             A  LF  +    ++ V W  MV+G+ +NG+      FF R +     + +Q +F  IL
Sbjct: 214 SEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFF-RYMHAQGVECNQYTFPTIL 272

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           +AC         + +H  +   G+   V V +AL+  Y KCG   + + +   M   +V+
Sbjct: 273 TACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVV 332

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +W +++ G V++ L EE L+LF  MH   +  +  T+  SV+ C  + ++   + +HG++
Sbjct: 333 SWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTF-PSVLNCCVVGSI-NPKSVHGLI 390

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K   ++   + +AL+DMY+K G ++ A+ +FE   E D +S T ++ G+AQN   EE++
Sbjct: 391 IKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESL 450

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           ++F  M   G+  D  +V+++L      T L  GKQ+H   IKS    +  V N L+ MY
Sbjct: 451 KIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMY 510

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KCG L+D+  +F  M  ++ ++W ++I  +A++G G  +L+ Y+ M   G  P  +TF+
Sbjct: 511 AKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFI 570

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            LL ACSH GLV++G ++ + M +V+ I P  EHYAC++D+ GR+G L EA+  +++M V
Sbjct: 571 GLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDV 630

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           KPD  VW++LL AC +H + E+ + AA  LF  +P +  PY++++N+YS S +W + AK 
Sbjct: 631 KPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKI 690

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            K MK  G+ KE G SW+EI  +V++F+ DD+ HP+   I+  + E++  + + GYVP+ 
Sbjct: 691 RKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDM 750

Query: 644 RFILH 648
            F LH
Sbjct: 751 SFSLH 755



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 277/559 (49%), Gaps = 65/559 (11%)

Query: 14  FPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHF-HLGPSLHASFIK 72
           F +C+ L  P++ KI  + T    ++++  +   S++LS       F     S+H +   
Sbjct: 7   FYYCNLL--PWLNKITDERT--VQQVIMHKFS--SKVLSFPHNPCKFMAFLRSIHTTTAA 60

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT------- 125
           ++E     ++Y         N LL+   K  Q+ +A KLFD MP +D  SWNT       
Sbjct: 61  SYE-----SIYQT-------NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108

Query: 126 ------------------------MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
                                   ++SG+ + G     F  F RS+ L  ++  Q +   
Sbjct: 109 VGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF-RSMRLEGWKASQFTLGS 167

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG--EMRV 219
           +L  C    L    +MIH  V   G+E  V V   L+  Y KC   S    +F   E   
Sbjct: 168 VLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDR 227

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +N + WTA+++G  QN    + ++ F  MH   +  N  T+ + + ACS + A C G Q+
Sbjct: 228 KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG + K    S++ ++SAL+DMY+KCG +++A  + E  E+ D VS   ++VGF ++G E
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++LF  M    ++ID     +VL    V +     K +H LIIK+ F +   V+N L
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSI--NPKSVHGLIIKTGFENYKLVSNAL 405

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY+K GD++ +  VF +M  ++ +SW S++  +A++ +  ++L+++ +M++ GV P  
Sbjct: 406 VDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQ 465

Query: 460 VTFLSLLHACSHVGLVNKG----MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
               S+L AC+ + L+  G    ++F+KS     R S     Y  +V M  + G L +A 
Sbjct: 466 FIVASILSACAELTLLEFGKQVHLDFIKSGL---RWSQSV--YNSLVAMYAKCGCLDDAD 520

Query: 516 SFIERMPVKPDVLVWQALL 534
           +    M VK DV+ W A++
Sbjct: 521 AIFVSMQVK-DVITWTAII 538



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 10/261 (3%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           Q D    + ++  Y   G + +A ++F+       ++ + I+ G+ + G + EA  LF  
Sbjct: 93  QKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRS 152

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           M   G +     + +VL V    +SLGL   G+ IH  ++K+ F  N FV  GL++MY+K
Sbjct: 153 MRLEGWKASQFTLGSVLRVC---SSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAK 209

Query: 406 CGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           C  + ++  +F  +    +N V W +M+  +A++G+G+KA+E +  M  +GVE    TF 
Sbjct: 210 CKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFP 269

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           ++L ACS V L     E +                + +VDM  + G L  A++ +E M  
Sbjct: 270 TILTACSSV-LARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME- 327

Query: 524 KPDVLVWQALLGACSIHGDSE 544
             DV+ W +L+     HG  E
Sbjct: 328 DDDVVSWNSLMVGFVRHGLEE 348


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 320/560 (57%), Gaps = 7/560 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF---KRSLEL 149
           NSL+  Y KC  +  A  LFD    ++ VSWN+M+ G+ R  E D+   F+   K   E 
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAR--EEDVCRTFYLLQKMQTED 300

Query: 150 GFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              + D+ +   +L  C +RSEL  + K +H   +  G +    V NA I +Y +CG+  
Sbjct: 301 AKMKADEFTILNVLPVCLERSELQSL-KELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S  +VF  M  + V +W A++ G  QN    + L L+++M    ++P+  T  S ++ACS
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +++L  G +IHG   +  L  D  I  +L+ +Y  CG    A  +F+  E    VS  V
Sbjct: 420 RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNV 479

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G++QNG  +EA+ LF +M+  GI+     +  V G     ++L LGK++H   +K+ 
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            T + FV++ +I+MY+K G +  S ++F R+  ++  SWN +IA +  HG G +ALEL+E
Sbjct: 540 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G++P D TF  +L ACSH GLV  G+E+   M  +H I P+ EHY CVVDM+GRA
Sbjct: 600 KMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRA 659

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G + +A   IE MP  PD  +W +LL +C IHG+  +G+  A KL   +P+ P  Y+L++
Sbjct: 660 GRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLIS 719

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+++ SG+W +  +   RMK++G+ K+ G SWIE+  +VH+F++ D+M P+ + +     
Sbjct: 720 NLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWR 779

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   +   GY P+   +LH
Sbjct: 780 RLEVKISSIGYTPDTGSVLH 799



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 244/491 (49%), Gaps = 22/491 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL--E 148
           + N+L++ Y KC  +  AVK+F+ MP R+ VSWN+++ GF  NG     F  F+  L  E
Sbjct: 138 VGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGE 197

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             F   D A+   +L  C   E       +H L    G  EE+ V N+LI  Y KC   S
Sbjct: 198 ESFVP-DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLS 256

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMA 266
             + +F +   +N+++W ++I G  + +       L  KM      +  +  T L+ +  
Sbjct: 257 EAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPV 316

Query: 267 C---SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           C   S LQ+L   +++HG  W+  LQS+  + +A +  Y++CG++  + ++F+  +    
Sbjct: 317 CLERSELQSL---KELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTV 373

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
            S   +L G+AQN    +A+ L+++M  +G++ D   + ++L       SL  G++IH  
Sbjct: 374 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGF 433

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            +++    +PF+   L+++Y  CG    +  +F  M  R+ VSWN MIA ++++G   +A
Sbjct: 434 ALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEA 493

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           + L+ +M  +G++P ++  + +  ACS +  +  G E      + H ++      + ++D
Sbjct: 494 INLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIID 552

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE------KLFLAQ 557
           M  + G +  ++   +R+  K DV  W  ++    IHG    GK A E      +L L  
Sbjct: 553 MYAKGGCIGLSQRIFDRLREK-DVASWNVIIAGYGIHG---RGKEALELFEKMLRLGLKP 608

Query: 558 PDSPAPYILMA 568
            D     ILMA
Sbjct: 609 DDFTFTGILMA 619



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 203/401 (50%), Gaps = 10/401 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  V+   +++ Y  C    ++  +FD +  ++   WN +VS + RN  F+     F   
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + +  ++ D  +   ++ AC       + ++IH +        +V VGNALI  Y KCG 
Sbjct: 92  ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 151

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN--PNSLTYLSSV 264
                KVF  M  RN+++W ++I G  +N   +E    F +M +G  +  P+  T ++ +
Sbjct: 152 VEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVL 211

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             C+G + + +G  +HG+  KL L  +L + ++L+DMYSKC  + +A  +F+  ++ + V
Sbjct: 212 PVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIV 271

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVK-----AGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           S   ++ G+A+   EE+  + F  + K     A ++ D   +  VL V    + L   K+
Sbjct: 272 SWNSMIGGYAR---EEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKE 328

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H    +    SN  V N  I  Y++CG L  S +VF  M  +   SWN+++  +A++ +
Sbjct: 329 LHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSD 388

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             KAL+LY +M   G++P   T  SLL ACS +  ++ G E
Sbjct: 389 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEE 429



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 225/462 (48%), Gaps = 31/462 (6%)

Query: 161 IILSACDRSELSLVSKMIHCLVYL-CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           ++L AC + +   V + +H +V     +  +  +   +IT Y  CGS S  R VF ++R 
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           +N+  W A++S   +N+L+E+ + +F ++  +    P++ T    + AC+GL  L  G+ 
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 122

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IHG+  K+ L SD+ + +AL+ MY KCG VE+A ++FE   E + VS   I+ GF++NGF
Sbjct: 123 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
            +E+   F +M+       P++ +   VL V   +  +  G  +H L +K        VN
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN 242

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-- 454
           N LI+MYSKC  L ++  +F +   +N VSWNSMI  +AR  +  +   L ++M+ E   
Sbjct: 243 NSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAK 302

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRA 508
           ++  + T L++L  C            L+S+ E+H  S R    +        +    R 
Sbjct: 303 MKADEFTILNVLPVCLE-------RSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRC 355

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYI 565
           G L  +    + M  K  V  W ALL  C    +S+  K  A  L+L   DS   P  + 
Sbjct: 356 GALCSSERVFDLMDTKT-VSSWNALL--CGYAQNSDPRK--ALDLYLQMTDSGLDPDWFT 410

Query: 566 LMANIYSCSG----RWKERAKAIKRMKEMGVDKETGISWIEI 603
           + + + +CS      + E          + VD   GIS + +
Sbjct: 411 IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSL 452


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 316/562 (56%), Gaps = 6/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L+  Y K +++  A +LF +MP  D+VS+N M++G+ ++G  +     F   +E+
Sbjct: 185 IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF---VEM 241

Query: 150 GFYQLDQASFTIILSACDRSELS--LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               L    FT     C    L   ++ + IH  V    +   V V NAL+  Y K  S 
Sbjct: 242 QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 301

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              RK+F EM  ++ +++  +ISG   +  ++    LF ++     +     + + +   
Sbjct: 302 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 361

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S       GRQIH         S++ + ++L+DMY+KCG  E+A  IF        V  T
Sbjct: 362 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 421

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  + Q GF EE +QLF KM +A +  D    +++L       SL LGKQ+HS IIKS
Sbjct: 422 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 481

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SN F  + L+++Y+KCG ++D+++ F  M  RN VSWN+MI+A+A++G     L+ +
Sbjct: 482 GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSF 541

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +EM L G++P  V+FL +L ACSH GLV +G+    SMT+++++ PR EHYA VVDM+ R
Sbjct: 542 KEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCR 601

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYIL 566
           +G   EA   +  MP+ PD ++W ++L AC IH + E+ + AA++LF + +    APY+ 
Sbjct: 602 SGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVN 661

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           M+NIY+ +G+W+  +K  K M++ GV K    SW+EI+ + H F  +D+ HPQ + I   
Sbjct: 662 MSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKK 721

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           +  L + M + GY P+    LH
Sbjct: 722 IDMLTKTMEELGYKPDTSCALH 743



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/570 (27%), Positives = 275/570 (48%), Gaps = 41/570 (7%)

Query: 5   WVFLKLNSNFPFCSSLVSPFI---------TKIIQ---DPTSSTSKLVLDNYVDISRLLS 52
           WV  K  S F   SSL SP +          +I++   DP +S S   + N++       
Sbjct: 11  WVMKKNVSTFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFL------- 63

Query: 53  ISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLF 112
              K G       L       FE   ++N       TV  N ++S Y+K   +  A KLF
Sbjct: 64  ---KNGELSQARQL-------FEKMPHKN-------TVSTNMMISGYVKSGNLGEARKLF 106

Query: 113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELS 172
           D M  R  V+W  ++ G+ +  +F   F  F +    G  + D  +F  +LS C+  E+ 
Sbjct: 107 DGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMG 165

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
                +   +   GY+  + VGN L+ SY K        ++F EM   + +++ A+I+G 
Sbjct: 166 NQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGY 225

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
            ++ L E+ + LFV+M    + P   T+ + + A  GL  +  G+QIH  + K     ++
Sbjct: 226 SKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV 285

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +AL+D YSK  SV DA ++F+   E DGVS  VI+ G+A +G  + A  LF ++   
Sbjct: 286 FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFT 345

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
             +      + +L +        +G+QIH+  I +   S   V N L++MY+KCG  E++
Sbjct: 346 AFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEA 405

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +F+ +  R++V W +MI+A+ + G   + L+L+ +M+   V     TF SLL A + +
Sbjct: 406 EMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASI 465

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
             ++ G + L S              + ++D+  + G + +A    + MP + +++ W A
Sbjct: 466 ASLSLGKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNA 523

Query: 533 LLGACSIHGDSEMGKYAAEKLFLA--QPDS 560
           ++ A + +G++E    + +++ L+  QPDS
Sbjct: 524 MISAYAQNGEAEATLKSFKEMVLSGLQPDS 553


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 327/588 (55%), Gaps = 48/588 (8%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN +L+ Y++  ++  A KLFD MP +D VSWN M+SG+ +NG  D     F +      
Sbjct: 111 WNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK-----M 165

Query: 152 YQLDQASFTIILSAC--------------DRSELSLVSKMIHCLVYLCGYEEEVTVG--- 194
              +  S+  +L+A                +S   L+S   +CL  + GY +   +G   
Sbjct: 166 PHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELIS--WNCL--MGGYVKRNMLGDAR 221

Query: 195 --------------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
                         N +I+ Y + G  S  +++F E  +R+V TWTA++SG VQN + +E
Sbjct: 222 QLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDE 281

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
             K F +M +     N ++Y + +      + +     I G L++     ++   + ++ 
Sbjct: 282 ARKYFDEMPV----KNEISYNAMLAGYVQYKKMV----IAGELFEAMPCRNISSWNTMIT 333

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
            Y + G +  A ++F+   + D VS   I+ G+AQNG  EEA+ +FV+M + G   + + 
Sbjct: 334 GYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRST 393

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            S  L       +L LGKQ+H  ++K+ F +  FV N L+ MY KCG  +++  VF  + 
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            ++ VSWN+MIA +ARHG G +AL L+E MK  GV+P ++T + +L ACSH GL+++G E
Sbjct: 454 EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTE 513

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  SM   + + P ++HY C++D++GRAG L EA + +  MP  P    W ALLGA  IH
Sbjct: 514 YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIH 573

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           G++E+G+ AAE +F  +P +   Y+L++N+Y+ SGRW +  K   +M+E GV K TG SW
Sbjct: 574 GNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSW 633

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +E++ ++H+F V D  HP+ D I+  L EL   M  EGYV + + +LH
Sbjct: 634 VEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLH 681



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 134/544 (24%), Positives = 242/544 (44%), Gaps = 82/544 (15%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN  +S +++     +A+++F+ MP R +VS+N M+SG+LRN +F +    F +  E 
Sbjct: 47  VTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPER 106

Query: 150 GFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             +     S+ ++L+   R+  L    K+   +      +++V   NA+++ Y + G   
Sbjct: 107 DLF-----SWNVMLTGYVRNRRLGEAHKLFDLMP-----KKDVVSWNAMLSGYAQNGFVD 156

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLT--YLSSVM 265
             R+VF +M  RN I+W  +++  V N   +E  +LF  + +  LI+ N L   Y+   M
Sbjct: 157 EAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNM 216

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
                  L + RQ    L+      D+   + ++  Y++ G +  A ++F  +   D  +
Sbjct: 217 -------LGDARQ----LFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFT 265

Query: 326 MTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            T ++ G+ QNG  +EA + F +M VK  I  +  +   V              Q   ++
Sbjct: 266 WTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYV--------------QYKKMV 311

Query: 385 IKSD-FTSNPFVN----NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I  + F + P  N    N +I  Y + G +  + K+F  M  R+ VSW ++I+ +A++G+
Sbjct: 312 IAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGH 371

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGME-------- 480
             +AL ++ EMK +G      TF   L  C+           H  +V  G E        
Sbjct: 372 YEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNA 431

Query: 481 ----FLK--SMTEVHRISPRAEH-----YACVVDMVGRAGLLIEARSFIERMP---VKPD 526
               + K  S  E + +    E      +  ++    R G   +A    E M    VKPD
Sbjct: 432 LLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPD 491

Query: 527 VLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            +    +L ACS  G  + G    Y+ ++ +  +P S   Y  M ++   +GR +E    
Sbjct: 492 EITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH-YTCMIDLLGRAGRLEEAENL 550

Query: 584 IKRM 587
           ++ M
Sbjct: 551 MRNM 554



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 184/441 (41%), Gaps = 81/441 (18%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           + ++   N  I+S+ + G   S  +VF  M  R+ +++ A+ISG ++N  +     LF K
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M                                        + DL   + ++  Y +   
Sbjct: 103 MP---------------------------------------ERDLFSWNVMLTGYVRNRR 123

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-G 366
           + +A ++F+   + D VS   +L G+AQNGF +EA ++F KM        P+  S    G
Sbjct: 124 LGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM--------PHRNSISWNG 175

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           +       G  K+   L  +S         N L+  Y K   L D+ ++F RM  R+ +S
Sbjct: 176 LLAAYVHNGRLKEARRL-FESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVIS 234

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+MI+ +A+ G+  +A  L+ E  +  V     T+ +++      G+V++  ++   M 
Sbjct: 235 WNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             + IS    + A +   V    ++I    F E MP + ++  W  ++     +G    G
Sbjct: 291 VKNEIS----YNAMLAGYVQYKKMVIAGELF-EAMPCR-NISSWNTMITGYGQNG----G 340

Query: 547 KYAAEKLFLAQPDSP-APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG-------- 597
              A KLF   P      +  + + Y+ +G ++E   A+    EM  D E+         
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEE---ALNMFVEMKRDGESSNRSTFSCA 397

Query: 598 ------ISWIEIEKQVHSFVV 612
                 I+ +E+ KQVH  VV
Sbjct: 398 LSTCADIAALELGKQVHGQVV 418


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 333/575 (57%), Gaps = 14/575 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G    G  +H   IK+    D           V+ +S +  Y KC+   +A+KLFD+MP 
Sbjct: 120 GRVGYGKMVHTHVIKSGFAMD----------VVVMSSAVGMYAKCNVFEDAIKLFDEMPE 169

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           RD  SWN ++S + ++G+ +     F+  +++  ++ D  + T ++S+C R       K 
Sbjct: 170 RDVASWNNVISCYYQDGQPEKALELFEE-MKVSGFKPDSVTLTTVISSCARLLDLERGKE 228

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +   G+  +  V +AL+  Y KCG     ++VF +++ +NV++W ++I+G      
Sbjct: 229 IHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 288

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSV-MACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            +  ++LF +M    I P +LT LSS+ MACS    L  G+ IHG + +  +++D+ + S
Sbjct: 289 SKSCIELFRRMDEEGIRP-TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNS 347

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+D+Y KCG++  A  +F+   + + VS  V++ G+ + G   EA+ +F  M KAG++ 
Sbjct: 348 SLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKP 407

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D    ++VL        L  GK+IH+ II+S    N  V   L++MY+KCG +++++ +F
Sbjct: 408 DAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF 467

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
           +++  R+ VSW SMIAA+  HG  F+AL+L+E+M+    +P  VTFL++L ACSH GLV+
Sbjct: 468 NQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVD 527

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALLG 535
           +G  +   M   +   P  EHY+C++D++GR G L EA   ++R P ++ DV +   L  
Sbjct: 528 EGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFS 587

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC +H   ++G+     L    PD P+ YI+++N+Y+   +W E  K   ++KE+G+ K 
Sbjct: 588 ACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN 647

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            G SWIE+ K++H FVV+DK HPQAD I+  ++ L
Sbjct: 648 PGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSIL 682



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 258/497 (51%), Gaps = 20/497 (4%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDM--PMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           N   +  SL++ Y  C   ++A  +F  +  P+ D   WN +++   +N  F  G   F 
Sbjct: 36  NNITLCKSLINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAACTKNFIFIEGLEVFH 94

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           R L   + + D  ++  +L AC         KM+H  V   G+  +V V ++ +  Y KC
Sbjct: 95  RLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKC 154

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                  K+F EM  R+V +W  VIS   Q+   E+ L+LF +M +    P+S+T  + +
Sbjct: 155 NVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI 214

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            +C+ L  L  G++IH  L +     D  + SAL+DMY KCG +E A ++FE  +  + V
Sbjct: 215 SSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVV 274

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G++  G  +  ++LF +M + GI      +S++L       +L LGK IH  I
Sbjct: 275 SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI 334

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I++   ++ FVN+ LI++Y KCG++  +  VF  M   N VSWN MI+ + + G+  +AL
Sbjct: 335 IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 394

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYAC 500
            ++ +M+  GV+P  +TF S+L ACS + ++ KG E     ++S  E++ +   A     
Sbjct: 395 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGA----- 449

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF--LAQP 558
           ++DM  + G + EA     ++P + D + W +++ A   HG +    + A KLF  + Q 
Sbjct: 450 LLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAAYGSHGQA----FEALKLFEKMQQS 504

Query: 559 DS-PAPYILMANIYSCS 574
           D+ P     +A + +CS
Sbjct: 505 DAKPDKVTFLAILSACS 521



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 207/397 (52%), Gaps = 9/397 (2%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D      +L  C  S+     K+IH  +   G +  +T+  +LI  YF C    S + V
Sbjct: 1   MDTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLV 60

Query: 214 FGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQ 271
           F  +    ++  W  +++   +N ++ EGL++F + +H   + P++ TY S + ACSGL 
Sbjct: 61  FQTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLG 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +  G+ +H  + K     D+ + S+ + MY+KC   EDA ++F+   E D  S   ++ 
Sbjct: 121 RVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVIS 180

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            + Q+G  E+A++LF +M  +G + D   ++ V+        L  GK+IH  +++S F  
Sbjct: 181 CYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFAL 240

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV++ L++MY KCG LE + +VF ++  +N VSWNSMIA ++  G+    +EL+  M 
Sbjct: 241 DGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMD 300

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
            EG+ PT  T  S+L ACS    +  G +F+      +R+       + ++D+  + G +
Sbjct: 301 EEGIRPTLTTLSSILMACSRSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
             A +  + MP K +V+ W  +     I G  ++G Y
Sbjct: 360 GSAENVFQNMP-KTNVVSWNVM-----ISGYVKVGSY 390


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/584 (35%), Positives = 323/584 (55%), Gaps = 13/584 (2%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F L   LHA  +K+    D           +  N+L+S Y K  QM +A+ +F  + ++D
Sbjct: 215 FKLARQLHAHVLKSEFGAD----------LIAQNALISMYTKFSQMADAINVFSRIIIKD 264

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            +SW +M++GF + G        F+  L    YQ ++  F    SAC +       + IH
Sbjct: 265 LISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIH 324

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L    G   ++  G +L   Y KCG   S R VF  +   +++ W A+I+G       +
Sbjct: 325 GLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAK 384

Query: 240 EGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E    F +M H GL+ PN +T LS + ACS    L  G Q+H  + K+    D+ + ++L
Sbjct: 385 ESSSFFSQMRHTGLV-PNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSL 443

Query: 299 MDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           + MYSKC ++ DA Q+FE    + D VS   +L    Q     E ++L   M  + I+ D
Sbjct: 444 LSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPD 503

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++ VL   G   S  +G QIH  I+KS    +  V+N LINMY+KCG LE + K+F 
Sbjct: 504 HVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFD 563

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +   + +SW+S+I  +A+ G G +A EL+  M+  GV+P ++TF+ +L ACSH+G+V +
Sbjct: 564 SIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEE 623

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G++  ++M E +RISP  EH +C+VD++ RAG L  A  FI +MP  PDV+VW+ LL AC
Sbjct: 624 GLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAAC 683

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            +HG+ E+GK AAE +    P + A  +++ NI++ SG WK+ A+    M+ M V K  G
Sbjct: 684 KVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPG 743

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            SWIEI+ +VH F+ +D +HP+   I+ +L EL+  ++D+   P
Sbjct: 744 QSWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQILDDSCDP 787



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 224/451 (49%), Gaps = 13/451 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N +LS Y KC  ++ A  +FD MP+++ VSW +M+SG+ R GE D     + + L  
Sbjct: 134 ILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRS 193

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    D  +F  I+ +C   +   +++ +H  V    +  ++   NALI+ Y K    + 
Sbjct: 194 GHIP-DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMAD 252

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
              VF  + ++++I+W ++I+G  Q     E L  F +M    +  PN   + S+  ACS
Sbjct: 253 AINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L     GRQIHG+  K  L SDL    +L DMY+KCG +E A  +F   E+ D V+   
Sbjct: 313 KLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNA 372

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ GFA     +E+   F +M   G+  +   V ++L        L  G Q+HS I+K  
Sbjct: 373 IIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMG 432

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELY 447
           F  +  V N L++MYSKC +L D+++VF  +  + + VSWN+++ A  +     + L L 
Sbjct: 433 FNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLT 492

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVD 503
           + M    ++P  VT  ++L +   +     G +     +KS   +      A     +++
Sbjct: 493 KLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA-----LIN 547

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           M  + G L  AR   + +   PD++ W +L+
Sbjct: 548 MYTKCGSLECARKMFDSIG-NPDIISWSSLI 577



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 200/390 (51%), Gaps = 12/390 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L   ++T +++AC         + IH  +  C Y+ ++ + N +++ Y KCGS    R +
Sbjct: 96  LKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNM 155

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M ++NV++WT++ISG  +    +  + L+V+M      P+  T+ S V +CSGL   
Sbjct: 156 FDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDF 215

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
              RQ+H  + K    +DL  ++AL+ MY+K   + DA  +F      D +S   ++ GF
Sbjct: 216 KLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGF 275

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG-VFGVDTSL---GLGKQIHSLIIKSDF 389
           +Q G+E EA+  F +M+   +   PN    V G  F   + L     G+QIH L IK   
Sbjct: 276 SQLGYELEALCHFREMLSQSV-YQPN--EFVFGSAFSACSKLLEPDCGRQIHGLCIKFGL 332

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ F    L +MY+KCG LE +  VF  +   + V+WN++IA FA   N  ++   + +
Sbjct: 333 GSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQ 392

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGR 507
           M+  G+ P DVT LSLL ACS   ++N G++     + + ++    +   C  ++ M  +
Sbjct: 393 MRHTGLVPNDVTVLSLLCACSEPVMLNHGIQV---HSYIVKMGFNLDIPVCNSLLSMYSK 449

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              L +A    E +  K D++ W  LL AC
Sbjct: 450 CSNLNDALQVFEDIGNKADIVSWNTLLTAC 479


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 333/575 (57%), Gaps = 14/575 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G    G  +H   IK+    D           V+ +S +  Y KC+   +A+KLFD+MP 
Sbjct: 312 GRVGYGKMVHTHVIKSGFAMD----------VVVMSSAVGMYAKCNVFEDAIKLFDEMPE 361

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           RD  SWN ++S + ++G+ +     F+  +++  ++ D  + T ++S+C R       K 
Sbjct: 362 RDVASWNNVISCYYQDGQPEKALELFEE-MKVSGFKPDSVTLTTVISSCARLLDLERGKE 420

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +   G+  +  V +AL+  Y KCG     ++VF +++ +NV++W ++I+G      
Sbjct: 421 IHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD 480

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSV-MACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            +  ++LF +M    I P +LT LSS+ MACS    L  G+ IHG + +  +++D+ + S
Sbjct: 481 SKSCIELFRRMDEEGIRP-TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNS 539

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+D+Y KCG++  A  +F+   + + VS  V++ G+ + G   EA+ +F  M KAG++ 
Sbjct: 540 SLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKP 599

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D    ++VL        L  GK+IH+ II+S    N  V   L++MY+KCG +++++ +F
Sbjct: 600 DAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIF 659

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
           +++  R+ VSW SMIAA+  HG  F+AL+L+E+M+    +P  VTFL++L ACSH GLV+
Sbjct: 660 NQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVD 719

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALLG 535
           +G  +   M   +   P  EHY+C++D++GR G L EA   ++R P ++ DV +   L  
Sbjct: 720 EGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFS 779

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC +H   ++G+     L    PD P+ YI+++N+Y+   +W E  K   ++KE+G+ K 
Sbjct: 780 ACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKN 839

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            G SWIE+ K++H FVV+DK HPQAD I+  ++ L
Sbjct: 840 PGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSIL 874



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/497 (30%), Positives = 258/497 (51%), Gaps = 20/497 (4%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDM--PMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           N   +  SL++ Y  C   ++A  +F  +  P+ D   WN +++   +N  F  G   F 
Sbjct: 228 NNITLCKSLINLYFSCHLFQSAKLVFQTIENPL-DITLWNGLMAACTKNFIFIEGLEVFH 286

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           R L   + + D  ++  +L AC         KM+H  V   G+  +V V ++ +  Y KC
Sbjct: 287 RLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKC 346

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                  K+F EM  R+V +W  VIS   Q+   E+ L+LF +M +    P+S+T  + +
Sbjct: 347 NVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI 406

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            +C+ L  L  G++IH  L +     D  + SAL+DMY KCG +E A ++FE  +  + V
Sbjct: 407 SSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVV 466

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G++  G  +  ++LF +M + GI      +S++L       +L LGK IH  I
Sbjct: 467 SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI 526

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I++   ++ FVN+ LI++Y KCG++  +  VF  M   N VSWN MI+ + + G+  +AL
Sbjct: 527 IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 586

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYAC 500
            ++ +M+  GV+P  +TF S+L ACS + ++ KG E     ++S  E++ +   A     
Sbjct: 587 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGA----- 641

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF--LAQP 558
           ++DM  + G + EA     ++P + D + W +++ A   HG +    + A KLF  + Q 
Sbjct: 642 LLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAAYGSHGQA----FEALKLFEKMQQS 696

Query: 559 DS-PAPYILMANIYSCS 574
           D+ P     +A + +CS
Sbjct: 697 DAKPDKVTFLAILSACS 713



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 202/378 (53%), Gaps = 9/378 (2%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISG 231
           L+ K+IH  +   G +  +T+  +LI  YF C    S + VF  +    ++  W  +++ 
Sbjct: 212 LLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAA 271

Query: 232 LVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
             +N ++ EGL++F + +H   + P++ TY S + ACSGL  +  G+ +H  + K     
Sbjct: 272 CTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAM 331

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D+ + S+ + MY+KC   EDA ++F+   E D  S   ++  + Q+G  E+A++LF +M 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
            +G + D   ++ V+        L  GK+IH  +++S F  + FV++ L++MY KCG LE
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + +VF ++  +N VSWNSMIA ++  G+    +EL+  M  EG+ PT  T  S+L ACS
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
               +  G +F+      +R+       + ++D+  + G +  A +  + MP K +V+ W
Sbjct: 512 RSVNLQLG-KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSW 569

Query: 531 QALLGACSIHGDSEMGKY 548
             +     I G  ++G Y
Sbjct: 570 NVM-----ISGYVKVGSY 582


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 340/594 (57%), Gaps = 46/594 (7%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +P+  +I WN +LS Y+K   +  A  LF+ MP +D VSWN M+SGF +NG  +     F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 144 KRSLELGFYQLDQASFTIILSA------CDRSELSLVSKM------IHCLVYLCGYEEEV 191
            + L       ++ S+  +LSA       + +     SKM       +CL  + GY  + 
Sbjct: 177 DQML-----VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL--MGGYVRKK 229

Query: 192 TVGNA-----------------LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            + +A                 +IT Y + G  S  R++F E+ +R+V  WTA++SG VQ
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N + +E  ++F +M       N +++ + +      Q + + R+    L+      +   
Sbjct: 290 NGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARE----LFDQMPSRNTSS 341

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + ++  Y++CG+++ A  +F+   + D +S   ++ G+AQ+G  EEA+ LF+KM + G 
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            ++ + ++  L       +L LGKQ+H  ++K+ F +     N L+ MY KCG +E++  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VF  +  ++ VSWN+MIA +ARHG G +AL L+E MK+  ++P DVT + +L ACSH GL
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGL 520

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V+KGME+  SM + + I+  A+HY C++D++GRAG L EA + ++ MP  PD   W ALL
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
           GA  IHGD+E+G+ AAEK+F  +PD+   Y+L++N+Y+ SGRW+E  +   +M++ GV K
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKK 640

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             G SW+EI+ + H F V D  HP+A+ I+  L EL   +  +G+V + + +LH
Sbjct: 641 VPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 225/466 (48%), Gaps = 45/466 (9%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V +  V WN  +S Y++  Q  +A+ +F+ M  R TV++N M+SG+L N +FD     F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 145 RSLELGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           +         D  S+ ++LS       LS    + + +      E++V   NA+++ + +
Sbjct: 116 K-----MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLSGFAQ 165

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLT--Y 260
            G     RK+F +M V+N I+W  ++S  VQN   E+  +LF  KM   +++ N L   Y
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +         + L + R +     ++ ++  +   + ++  Y++ G + +A ++FE    
Sbjct: 226 VRK-------KRLDDARSLFD---RMPVRDKISW-NIMITGYAQNGLLSEARRLFEELPI 274

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDTSLGLGKQ 379
            D  + T ++ GF QNG  +EA ++F +M +   E+  N M++  +    ++ +  L  Q
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN-EVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           + S         N    N ++  Y++CG+++ +  +F  M  R+ +SW +MI+ +A+ G 
Sbjct: 334 MPS--------RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRA 495
             +AL L+ +MK +G           L +C+ +  +  G +     +K+  +   I+  A
Sbjct: 386 SEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNA 445

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                ++ M G+ G + EA    E +  K D++ W  ++   + HG
Sbjct: 446 -----LLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARHG 485



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K  E FD     N    T  WN++++ Y +C  +  A  LFD+MP RD +SW  M+SG+ 
Sbjct: 326 KARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G+ +     F +    G   L++++    LS+C       + K +H  +   G++   
Sbjct: 382 QSGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGY 440

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
             GNAL+  Y KCGS      VF ++  +++++W  +I+G  ++   +E L LF  M + 
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM- 499

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVED 310
            I P+ +T +  + ACS    + +G +    +++   + ++    + ++D+  + G +++
Sbjct: 500 TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDE 559

Query: 311 A 311
           A
Sbjct: 560 A 560



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K   S I+ SD        N  I+ Y + G  E ++ VF+ M  R++V++N+MI+ +  +
Sbjct: 49  KNSDSTIVDSDIVKW----NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSN 104

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                A +++E+M    +    +++  +L      G ++        M E   +S     
Sbjct: 105 NKFDCARKVFEKMPDRDL----ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----- 155

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           +  ++    + G + EAR   ++M VK ++  W  LL A   +G  E     A +LF ++
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEI-SWNGLLSAYVQNGRIE----DARRLFDSK 210

Query: 558 PD 559
            D
Sbjct: 211 MD 212


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 329/627 (52%), Gaps = 76/627 (12%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V   T + N+L+S Y +  ++R A ++FD +P+R+T S+N ++S + R G  D     F+
Sbjct: 48  VAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFE 107

Query: 145 R--------------------------------SLELGFYQLDQASFTIILSACDRSELS 172
                                            ++    + L+  SF   LSAC   +  
Sbjct: 108 AIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDL 167

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
              + +H LV    + ++V +G AL+  Y KC      R+VF  M  RNV++W ++I+  
Sbjct: 168 RTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCY 227

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM-ACSGLQALCEGRQIHGILWKL-ALQS 290
            QN    E L LFV+M      P+ +T LSSVM AC+GL A  EGRQ+H  + K   L+ 
Sbjct: 228 EQNGPVGEALVLFVEMMATGFFPDEVT-LSSVMSACAGLAAEREGRQVHAHMVKRDRLRD 286

Query: 291 DLCIESALMDMYSKCG-------------------------------SVEDAWQIFEFAE 319
           D+ + +AL+DMY+KCG                               +VEDA  +F    
Sbjct: 287 DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMV 346

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + ++  V++  +AQNG EEEA++LFV++ +  I         VL   G    L LG+Q
Sbjct: 347 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 406

Query: 380 IHSLIIKSDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
            H  ++K  F       S+ FV N L++MY K G ++D  KVF RMA R++VSWN+MI  
Sbjct: 407 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVG 466

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A++G    AL L+E M      P  VT + +L AC H GLV++G      MTE H I+P
Sbjct: 467 YAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITP 526

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HY C+VD++GRAG L EA   I+ MP +PD ++W +LLGAC +H + E+G+  A +L
Sbjct: 527 SRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRL 586

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F   P++  PY+L++N+Y+  G+W +  +  + MK+ GV K+ G SWIEI  +++ F+  
Sbjct: 587 FELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLAR 646

Query: 614 DKMHPQADTIHGVLA----ELLRLMID 636
           D  HP  + IH  L     E+ R  ID
Sbjct: 647 DNRHPCRNEIHSTLRIIQMEMCRTSID 673



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 54/352 (15%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           ++P+ +V+   S+L+ Y K   + +A  +F  M  ++ ++WN +++ + +NGE +     
Sbjct: 313 SMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRL 372

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY------EEEVTVGNA 196
           F + L+         ++  +L+AC    +  + +  H  V   G+      E +V VGN+
Sbjct: 373 FVQ-LKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNS 431

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L+  Y K GS   G KVF  M  R+ ++W A+I G  QN   ++ L LF +M     NP+
Sbjct: 432 LVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPD 491

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           S+T +  + AC                                      G V++  + F 
Sbjct: 492 SVTMIGVLSAC-----------------------------------GHSGLVDEGRRHFH 516

Query: 317 FAEELDGVS-----MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           F  E  G++      T ++    + G  +EA +L   M     E D  + +++LG   + 
Sbjct: 517 FMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMP---TEPDSVLWASLLGACRLH 573

Query: 372 TSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            ++ LG++    + + D   S P+V   L NMY++ G   D  +V   M  R
Sbjct: 574 KNVELGERTAGRLFELDPENSGPYVL--LSNMYAEMGKWADVFRVRRSMKDR 623



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 90/198 (45%), Gaps = 41/198 (20%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           SL   +  H  ++KS      F+ N L++ Y++ G L ++ +VF  +  RN+ S+N++++
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSM----- 485
           A+AR G   +A  L+E +     +P   ++ +++ A +  G  + G  + FL +M     
Sbjct: 92  AYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDF 147

Query: 486 -----------------------TEVHRISPRAEHY------ACVVDMVGRAGLLIEARS 516
                                   +VH +  R+ H         +VDM  +    ++AR 
Sbjct: 148 VLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARR 207

Query: 517 FIERMPVKPDVLVWQALL 534
             + MP + +V+ W +L+
Sbjct: 208 VFDAMPER-NVVSWNSLI 224


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/620 (34%), Positives = 322/620 (51%), Gaps = 72/620 (11%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--- 145
           T + N+LLS Y +   + +A ++FD MP R+T S+N ++S   R G  D     F     
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 146 ---------------------------SLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
                                      ++    + L+  SF   LSAC   + S   + +
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H LV    +  +V +G AL+  Y KC      +KVF  M  RN+++W ++I+   QN   
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPV 229

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESA 297
           +E L LFV+M      P+ +T  S + AC+GL A  EGRQ+H  + K    + D+ + +A
Sbjct: 230 DEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNA 289

Query: 298 LMDMYSKCG-------------------------------SVEDAWQIFEFAEELDGVSM 326
           L+DMY+KCG                               +V DA  +F    E + V+ 
Sbjct: 290 LVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAW 349

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            V++  +A N  EEEA++LFV++ +  +         VL       +L LG+Q H  ++K
Sbjct: 350 NVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLK 409

Query: 387 SDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
             F       S+ FV N L++MY K G + D  KVF RMA R++VSWN+MI  +A++G  
Sbjct: 410 EGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRA 469

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
             AL L+E M      P  VT + +L AC H GLV +G  + +SMTE H I P  +HY C
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTC 529

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           ++D++GRAG L E    IE MP++PD ++W +LLGAC +H + +MG++AA KLF   PD+
Sbjct: 530 MIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDN 589

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
             PY+L++N+Y+  G+W +  +  + MK  GV K+ G SWIEI ++V+ F+  D +HP  
Sbjct: 590 SGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIHPCR 649

Query: 621 DTIHGVLA----ELLRLMID 636
           + IH  L     ++ R+ ID
Sbjct: 650 NEIHDTLRIIQMQMSRMSID 669



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 21/234 (8%)

Query: 66  LHASFIKTFEP---FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           ++A   +T+E    FD   + +V + T    S+++ Y K   + +A  +F  M  ++ V+
Sbjct: 293 MYAKCGRTWEAKCVFDRMAIRSVVSET----SMITGYAKSANVGDAQAVFLQMVEKNVVA 348

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-DRSELSLVSKM-IHC 180
           WN +++ +  N E +     F R L+         ++  +L+AC + + L L  +  +H 
Sbjct: 349 WNVLIATYAHNSEEEEALRLFVR-LKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHV 407

Query: 181 L----VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           L     +  G E +V VGN+L+  Y K GS S G KVF  M  R+ ++W A+I G  QN 
Sbjct: 408 LKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNG 467

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-------HGIL 283
             ++ L LF +M      P+S+T +  + AC     + EGR+        HGI+
Sbjct: 468 RAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGII 521



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 14/177 (7%)

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F    F+ N L++ Y++ G L D+ +VF  M  RN+ S+N++++A AR G    AL L
Sbjct: 44  SPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE----VHRISPRAEHYACVV 502
           +  +     +P   ++ +++ A +  G     + FL +M      ++  S  +   AC  
Sbjct: 104 FGAIP----DPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACAS 159

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           +   R G  + A   + +     DV +  AL+    ++   E  +  A+K+F A P+
Sbjct: 160 EKASRTGEQVHA--LVTKSSHGSDVYIGTALV---DMYAKCERPE-EAQKVFDAMPE 210


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/507 (37%), Positives = 302/507 (59%), Gaps = 1/507 (0%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           M  A K+FD MP RD   WNT++ G+   G  +     +      G +  D  +F  ++ 
Sbjct: 78  MDYARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFP-DNYTFPFVVR 136

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           +C         K +HC +   G++ +V V ++L+  Y + G +     VFGEM VRN+++
Sbjct: 137 SCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVS 196

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WTAVI+G VQN+ ++EGL +F +M      PN++T +S + AC+GL+ L  G+ IHG   
Sbjct: 197 WTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGI 256

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           KL +  D+ + +AL+ +Y KCG+VE A  +F+     + VS   ++  + QN     A++
Sbjct: 257 KLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVK 316

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF +M    ++ D   + +V+       +L  G+ +H L+ +     N  + N LI+MY+
Sbjct: 317 LFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYA 376

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG+++ + +VF R+  R+ VSW SMI A A HG+G  AL+L+  MK EGV+P   TF +
Sbjct: 377 KCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAA 436

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +  AC H GLV +G +  +SM   + I P  EH AC+VD++GRAG L+EA  FI++MPV+
Sbjct: 437 VFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE 496

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           PDV VW ALLG+C IH + E+ +  AEKLFL  P +   Y+LM+NIY+ +GRW++ A+  
Sbjct: 497 PDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLR 556

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFV 611
           K M+E  + K  G S +E+ ++ H+F+
Sbjct: 557 KLMEERELKKIPGHSLVEVNRRFHTFL 583



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 221/436 (50%), Gaps = 15/436 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI-TSYFKCGSSSSGRKVFGE 216
           SF  +L+ C  S L  +S+ IH LV   G  + + +   LI T+     +    RK+F +
Sbjct: 31  SFNYLLNCC--SSLPDLSR-IHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ 87

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  R+V  W  +I G       EE L L+  MH   + P++ T+   V +C+ L AL EG
Sbjct: 88  MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +++H  + K    SD+ ++S+L+ MYS+ G       +F      + VS T ++ G+ QN
Sbjct: 148 KEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQN 207

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
            + +E + +F +MV +G + +   + +VL        L LGK IH   IK     +  + 
Sbjct: 208 RYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLT 267

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N LI +Y KCG++E +  +F  M  +N VSWN+MIAA+ ++  G  A++L+  M+ E V+
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
              +T +S++ AC+ +G +N G  ++  + +   +         ++DM  + G +  AR 
Sbjct: 328 FDYITMVSVISACASLGALNTG-RWMHELVKRKGLEINVSITNALIDMYAKCGNIDLARE 386

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYSC 573
             ER+P +  V+ W +++GAC+ HG  E     A KLF    D    P  +   A   +C
Sbjct: 387 VFERLPCR-SVVSWTSMIGACASHGHGE----DALKLFSRMKDEGVKPNSFTFAAVFTAC 441

Query: 574 --SGRWKERAKAIKRM 587
             SG  +E  K  + M
Sbjct: 442 RHSGLVEEGRKHFESM 457



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 202/379 (53%), Gaps = 7/379 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL++ Y +  +      +F +M +R+ VSW  +++G+++N  F  G G F+  +  G
Sbjct: 165 VQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG 224

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q +  +   +L AC   E   + K+IH      G + +V++ NALI  Y KCG+  + 
Sbjct: 225 -TQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETA 283

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F  M V+N+++W A+I+   QN      +KLF +M    ++ + +T +S + AC+ L
Sbjct: 284 RSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASL 343

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  GR +H ++ +  L+ ++ I +AL+DMY+KCG+++ A ++FE       VS T ++
Sbjct: 344 GALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMI 403

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              A +G  E+A++LF +M   G++ +    +AV         +  G++ H   +  D++
Sbjct: 404 GACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRK-HFESMMRDYS 462

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELY 447
             P V +   ++++  + G L ++ +   +M     VS W +++ +   H N  +  EL 
Sbjct: 463 IMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSN-LELAELV 521

Query: 448 EEMKLEGVEPTDVTFLSLL 466
            E KL  ++P  VTF  L+
Sbjct: 522 AE-KLFLLDPQTVTFYVLM 539



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 12/275 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +L   A     +LG  +H   IK            V     + N+L++ Y KC
Sbjct: 228 NAVTLVSVLPACAGLEFLNLGKLIHGYGIK----------LGVDPDVSLTNALIALYGKC 277

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A  LFD M +++ VSWN M++ + +N         F+R ++      D  +   +
Sbjct: 278 GNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRR-MQAEKVDFDYITMVSV 336

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           +SAC         + +H LV   G E  V++ NALI  Y KCG+    R+VF  +  R+V
Sbjct: 337 ISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSV 396

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHG 281
           ++WT++I     +   E+ LKLF +M    + PNS T+ +   AC     + EGR+    
Sbjct: 397 VSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFES 456

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           ++   ++   +   + ++D+  + GS+ +A++  +
Sbjct: 457 MMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFID 491


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 323/560 (57%), Gaps = 6/560 (1%)

Query: 90   VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
             + N+L+SFY K + + +AV +F+ MP +DT+SWN+++SG   NG        F R    
Sbjct: 453  AVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQ 512

Query: 150  GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            G  +LD  +   +L AC +S      +++H      G   E ++ NAL+  Y  C    S
Sbjct: 513  G-QELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQS 571

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              ++F  M  +NV++WTA+I+  ++  L+++   L  +M L  I P+     S++ A +G
Sbjct: 572  TNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAG 631

Query: 270  LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             ++L +G+ +HG   +  ++  L + +ALM+MY KC +VE+A  IF+     D +S   +
Sbjct: 632  DESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTL 691

Query: 330  LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
            + G+++N F  E+  LF  M+   ++  PN V+   +L      +SL  G++IH+  ++ 
Sbjct: 692  IGGYSRNNFPNESFSLFSDML---LQFRPNAVTMTCILPAAASISSLERGREIHAYALRR 748

Query: 388  DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             F  + + +N L++MY KCG L  +  +F R+  +N +SW  MIA +  HG G  A+ L+
Sbjct: 749  GFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALF 808

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            E+M+  G+EP   +F ++L+AC H GL  +G  F K+M + ++I P+ +HY C+VD++ R
Sbjct: 809  EQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSR 868

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
             G L EA  FIE MP++PD  +W +LL  C IH + ++ +  A+K+F  +P++   Y+L+
Sbjct: 869  TGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLL 928

Query: 568  ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            ANIY+ + RW+   K   ++   G+ + TG SWIE+  +VH F+ D++ HP  + I   L
Sbjct: 929  ANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFL 988

Query: 628  AELLRLMIDEGYVPNKRFIL 647
             ++ R M  EG+ P K++ L
Sbjct: 989  DDVARRMRQEGHDPKKKYAL 1008



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 155/562 (27%), Positives = 269/562 (47%), Gaps = 36/562 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V +  +L   A  G+  +G ++H   +K+   +   +V +  +   + + L+  Y+KC  
Sbjct: 306 VTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGD 365

Query: 105 MRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           M +A ++FD M  +  V  WN ++ G+ + GEF+     F +  ELG    D+ + + +L
Sbjct: 366 MASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP-DEHAISCLL 424

Query: 164 S-----ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
                 +C R  L     + H  +   G+  +  V NALI+ Y K         VF  M 
Sbjct: 425 KCITCLSCARDGL-----VAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP 479

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            ++ I+W +VISG   N L  E ++LF++M       +S+T LS + AC+  +    GR 
Sbjct: 480 RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRV 539

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG   K  L  +  + +AL+DMYS C   +   QIF    + + VS T ++  + + G 
Sbjct: 540 VHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL 599

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            ++   L  +MV  GI  D   V++ L  F  D SL  GK +H   I++       V N 
Sbjct: 600 FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANA 659

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L+ MY KC ++E++  +F R+  ++ +SWN++I  ++R+    ++  L+ +M L+   P 
Sbjct: 660 LMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPN 718

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYA--CVVDMVGRAGLLI 512
            VT   +L A + +  + +G        E+H  + R     + YA   +VDM  + G L+
Sbjct: 719 AVTMTCILPAAASISSLERG-------REIHAYALRRGFLEDSYASNALVDMYVKCGALL 771

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMAN 569
            AR   +R+  K +++ W  ++    +HG    GK+A   LF     S   P      A 
Sbjct: 772 VARVLFDRL-TKKNLISWTIMIAGYGMHG---FGKHAI-ALFEQMRGSGIEPDAASFSAI 826

Query: 570 IYSC--SGRWKERAKAIKRMKE 589
           +Y+C  SG   E  +  K M++
Sbjct: 827 LYACCHSGLAAEGRRFFKAMQK 848



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 221/473 (46%), Gaps = 34/473 (7%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            A  + N+L++ Y +C +M +A ++FD M  RD +SWN+M+ G   NG        F + 
Sbjct: 237 QACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKM 296

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE----------EEVTVGNA 196
              G  ++   +   +L AC      L+ K +H      G            ++  +G+ 
Sbjct: 297 WSQG-TEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSK 355

Query: 197 LITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           L+  Y KCG  +S R+VF  M  + NV  W  ++ G  +   +EE L LFV+MH   I P
Sbjct: 356 LVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAP 415

Query: 256 NSLTYLSSVMAC-SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           +    +S ++ C + L    +G   HG + KL   +   + +AL+  Y+K   + DA  +
Sbjct: 416 DEHA-ISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLV 474

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      D +S   ++ G + NG   EA++LF++M   G E+D   + +VL         
Sbjct: 475 FNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYW 534

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G+ +H   +K+       + N L++MYS C D + + ++F  M  +N VSW +MI ++
Sbjct: 535 FAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSY 594

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----- 489
            R G   K   L +EM L+G+ P      S LHA +       G E LK    VH     
Sbjct: 595 MRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFA-------GDESLKQGKSVHGYTIR 647

Query: 490 ----RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
               ++ P A     +++M  +   + EAR   +R+  K DV+ W  L+G  S
Sbjct: 648 NGMEKLLPVAN---ALMEMYVKCRNVEEARLIFDRVTNK-DVISWNTLIGGYS 696



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/399 (31%), Positives = 205/399 (51%), Gaps = 16/399 (4%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR--DTVSWNTMVSGFLRNGEFDMGFGFFK 144
             +V+   L+  YLKC  +  A  +FD MP +  D   W +++S + + G+F      F 
Sbjct: 134 KGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLF- 192

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           R ++      D  + + +L  C  S  SL   ++IH L+   G  +   V NALI  Y +
Sbjct: 193 RQMQCCGVSPDAHAVSCVLK-CVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSR 251

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG      +VF  M  R+ I+W ++I G   N  +   + LF KM       +S+T LS 
Sbjct: 252 CGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSV 311

Query: 264 VMACSGLQALCEGRQIH------GILWKL-ALQS---DLCIESALMDMYSKCGSVEDAWQ 313
           + AC+GL     G+ +H      G+LW L ++QS   D  + S L+ MY KCG +  A +
Sbjct: 312 LPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR 371

Query: 314 IFEFAEELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           +F+       V +  +I+ G+A+ G  EE++ LFV+M + GI  D + +S +L      +
Sbjct: 372 VFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLS 431

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
               G   H  I+K  F +   V N LI+ Y+K   + D++ VF+RM  ++++SWNS+I+
Sbjct: 432 CARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVIS 491

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
             + +G   +A+EL+  M  +G E   VT LS+L AC+ 
Sbjct: 492 GCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 198/414 (47%), Gaps = 37/414 (8%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE----EEVTVGNALITSYFKCGSSSS 209
           +D  S+ +++  C        +K  H L+          +   +G  L+ +Y KCG    
Sbjct: 95  VDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGE 154

Query: 210 GRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            R VF  M  +  +V  WT+++S   +   ++E + LF +M    ++P++   +S V+ C
Sbjct: 155 ARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHA-VSCVLKC 213

Query: 268 -SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S L +L EG  IHG+L KL L     + +AL+ +YS+CG +EDA ++F+     D +S 
Sbjct: 214 VSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISW 273

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLII 385
             ++ G   NG+   A+ LF KM   G EI    V +VL    G+   L +GK +H   +
Sbjct: 274 NSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGL-IGKAVHGYSV 332

Query: 386 KSDF----------TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAF 434
           KS              +  + + L+ MY KCGD+  + +VF  M+ + +V  WN ++  +
Sbjct: 333 KSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGY 392

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH-----ACSHVGLVNKGMEFLKSMTEVH 489
           A+ G   ++L L+ +M   G+ P +     LL      +C+  GLV  G         + 
Sbjct: 393 AKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY--------IV 444

Query: 490 RISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           ++   A+   C  ++    ++ ++ +A     RMP + D + W +++  CS +G
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNG 497



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 130/258 (50%), Gaps = 11/258 (4%)

Query: 298 LMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           L+  Y KCG + +A  +F+    +  D    T ++  +A+ G  +EA+ LF +M   G+ 
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D + VS VL       SL  G+ IH L+ K        V N LI +YS+CG +ED+ +V
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV--G 473
           F  M PR+++SWNSMI     +G    A++L+ +M  +G E + VT LS+L AC+ +  G
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 474 LVNKGME-------FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
           L+ K +         L  +  V      A   + +V M  + G +  AR   + M  K +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 527 VLVWQALLGACSIHGDSE 544
           V VW  ++G  +  G+ E
Sbjct: 382 VHVWNLIMGGYAKVGEFE 399


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 321/560 (57%), Gaps = 6/560 (1%)

Query: 90   VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
             + N+L+SFY K + + NAV +FD MP +DT+SWN+++SG   NG        F R    
Sbjct: 446  AVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQ 505

Query: 150  GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            G ++LD  +   +L AC RS    V +++H      G   E ++ NAL+  Y  C    S
Sbjct: 506  G-HELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHS 564

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              ++F  M  +NV++WTA+I+   +  L+++   L  +M L  I P+     S +   +G
Sbjct: 565  TNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAG 624

Query: 270  LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             ++L +G+ +HG   +  ++  L + +ALM+MY  C ++E+A  +F+     D +S   +
Sbjct: 625  DESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTL 684

Query: 330  LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
            + G+++N F  E+  LF  M+   ++  PN V+   +L      +SL  G++IH+  ++ 
Sbjct: 685  IGGYSRNNFANESFSLFSDML---LQFKPNTVTMTCILPAVASISSLERGREIHAYALRR 741

Query: 388  DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             F  + + +N L++MY KCG L  +  +F R+  +N +SW  MIA +  HG G  A+ L+
Sbjct: 742  GFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALF 801

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            E+M+  GVEP   +F ++L+AC H GL  +G +F  +M + ++I P+ +HY C+VD++  
Sbjct: 802  EQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSH 861

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
             G L EA  FIE MP++PD  +W +LL  C IH D ++ +  A+++F  +P++   Y+L+
Sbjct: 862  TGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLL 921

Query: 568  ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            ANIY+ + RW+   K   ++   G+ + TG SWIE+  +VH F+ D++ HP+ + I   L
Sbjct: 922  ANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFL 981

Query: 628  AELLRLMIDEGYVPNKRFIL 647
              + R M +EG+ P K++ L
Sbjct: 982  DHVARRMREEGHDPKKKYSL 1001



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 223/471 (47%), Gaps = 33/471 (7%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           A  + N+L++ Y +C  M +A+++FD M  RD +SWN+ +SG+  NG  D     F +  
Sbjct: 232 ACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMW 291

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV---------TVGNALI 198
             G  ++   +   +L AC      LV K++H      G   ++          +G+ L+
Sbjct: 292 SEG-TEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLV 350

Query: 199 TSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
             Y KCG   S R+VF  M  + NV  W  ++ G  +   +EE L LF +MH   I P+ 
Sbjct: 351 FMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDE 410

Query: 258 LTYLSSVMAC-SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
              LS ++ C + L    +G   HG L KL   +   + +AL+  Y+K   +++A  +F+
Sbjct: 411 HA-LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFD 469

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
                D +S   ++ G   NG   EA++LFV+M   G E+D   + +VL          +
Sbjct: 470 RMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFV 529

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+ +H   +K+       + N L++MYS C D   + ++F  MA +N VSW +MI ++ R
Sbjct: 530 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTR 589

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------- 489
            G   K   L +EM L+G++P      S+LH  +       G E LK    VH       
Sbjct: 590 AGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA-------GDESLKQGKSVHGYAIRNG 642

Query: 490 --RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             ++ P A     +++M      + EAR   + +  K D++ W  L+G  S
Sbjct: 643 MEKLLPVAN---ALMEMYVNCRNMEEARLVFDHVTNK-DIISWNTLIGGYS 689



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 141/509 (27%), Positives = 249/509 (48%), Gaps = 28/509 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V +  +L   A+ G   +G  +H   +K+   +D ++V +  +   + + L+  Y+KC  
Sbjct: 300 VTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGID-EALGSKLVFMYVKCGD 358

Query: 105 MRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           M +A ++FD MP +  V  WN ++ G+ +  EF+     F++  ELG    D+ + + +L
Sbjct: 359 MGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITP-DEHALSCLL 417

Query: 164 S-----ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
                 +C R  L     + H  +   G+  +  V NALI+ Y K     +   VF  M 
Sbjct: 418 KCITCLSCARDGL-----VAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMP 472

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            ++ I+W +VISG   N L  E ++LFV+M +     +S T LS + AC+       GR 
Sbjct: 473 HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRV 532

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG   K  L  +  + +AL+DMYS C       QIF    + + VS T ++  + + G 
Sbjct: 533 VHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGL 592

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            ++   L  +MV  GI+ D   V++VL  F  D SL  GK +H   I++       V N 
Sbjct: 593 FDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANA 652

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L+ MY  C ++E++  VF  +  ++ +SWN++I  ++R+    ++  L+ +M L+  +P 
Sbjct: 653 LMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPN 711

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYA--CVVDMVGRAGLLI 512
            VT   +L A + +  + +G        E+H  + R     + Y    +VDM  + G L+
Sbjct: 712 TVTMTCILPAVASISSLERG-------REIHAYALRRGFLEDSYTSNALVDMYVKCGALL 764

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            AR   +R+  K +++ W  ++    +HG
Sbjct: 765 VARVLFDRL-TKKNLISWTIMIAGYGMHG 792



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/405 (31%), Positives = 207/405 (51%), Gaps = 17/405 (4%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR--DTVSWNTMVSGFLRNGEFDMGFGFFKR 145
            +V+   L+  YLKC  +  A  +FD+MP R  D   W +++S + + G+F  G   F R
Sbjct: 129 GSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLF-R 187

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
            ++      D  + + +L  C  S  S+   ++IH L+   G  E   V NALI  Y +C
Sbjct: 188 QMQCCGVSPDAHAVSCVLK-CIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRC 246

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G      +VF  M  R+ I+W + ISG   N  ++  + LF KM       +S+T LS +
Sbjct: 247 GCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVL 306

Query: 265 MACSGLQALCEGRQIH------GILWKL-ALQS--DLCIESALMDMYSKCGSVEDAWQIF 315
            AC+ L     G+ +H      G+LW L ++QS  D  + S L+ MY KCG +  A ++F
Sbjct: 307 PACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVF 366

Query: 316 EFAEELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           +       V +  +I+ G+A+    EE++ LF +M + GI  D + +S +L      +  
Sbjct: 367 DAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCA 426

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G   H  ++K  F +   V N LI+ Y+K   +++++ VF RM  ++++SWNS+I+  
Sbjct: 427 RDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC--SHVGLVNK 477
             +G   +A+EL+  M ++G E    T LS+L AC  SH   V +
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGR 531



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 185/371 (49%), Gaps = 34/371 (9%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           +G  L+ +Y KCG     R VF EM  RV +V  WT+++S   +   ++EG+ LF +M  
Sbjct: 132 LGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191

Query: 251 GLINPNSLTYLSSVMAC-SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
             ++P++   +S V+ C + L ++ EG  IHG+L KL L     + +AL+ +YS+CG +E
Sbjct: 192 CGVSPDAHA-VSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCME 250

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA Q+F+     D +S    + G+  NG+ + A+ LF KM   G EI       VL V  
Sbjct: 251 DAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISS---VTVLSVLP 307

Query: 370 VDTSLG---LGKQIHSLIIKS----DFTS-----NPFVNNGLINMYSKCGDLEDSIKVFS 417
               LG   +GK +H   +KS    D  S     +  + + L+ MY KCGD+  + +VF 
Sbjct: 308 ACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFD 367

Query: 418 RMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH-----ACSH 471
            M  + +V  WN ++  +A+     ++L L+E+M   G+ P +     LL      +C+ 
Sbjct: 368 AMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCAR 427

Query: 472 VGLVNKG-MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            GLV  G +  L   T+    +     YA       ++ ++  A    +RMP   D + W
Sbjct: 428 DGLVAHGYLVKLGFGTQCAVCNALISFYA-------KSNMIDNAVLVFDRMP-HQDTISW 479

Query: 531 QALLGACSIHG 541
            +++  C+ +G
Sbjct: 480 NSVISGCTSNG 490


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 326/559 (58%), Gaps = 2/559 (0%)

Query: 89   TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
              + NSL++ Y K  ++ +A KLFD++  RD VSWN+M+SG + NG       FF + L 
Sbjct: 588  NTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLI 647

Query: 149  LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            L    +D A+    ++AC       + + +H       +  EV   N L+  Y KCG+ +
Sbjct: 648  LRV-GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLN 706

Query: 209  SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               + F +M  + V++WT++I+  V+  LY++ ++LF +M    ++P+  +  S + AC+
Sbjct: 707  DAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766

Query: 269  GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               +L +GR +H  + K  +   L + +ALMDMY+KCGS+E+A+ +F      D VS   
Sbjct: 767  CGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNT 826

Query: 329  ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
            ++ G+++N    EA++LF +M K     D   ++ +L   G   +L +G+ IH  I+++ 
Sbjct: 827  MIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNG 885

Query: 389  FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            ++S   V N LI+MY KCG L  +  +F  +  ++ ++W  MI+    HG G +A+  ++
Sbjct: 886  YSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQ 945

Query: 449  EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            +M++ G++P ++TF S+L+ACSH GL+N+G  F  SM     + P+ EHYAC+VD++ R 
Sbjct: 946  KMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLART 1005

Query: 509  GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
            G L +A + IE MP+KPD  +W ALL  C IH D E+ +  AE +F  +PD+   Y+L+A
Sbjct: 1006 GNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLA 1065

Query: 569  NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
            NIY+ + +W+E  K  +R+ + G+ K  G SWIE++ +  +FV  D  HPQA +I  +L 
Sbjct: 1066 NIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLN 1125

Query: 629  ELLRLMIDEGYVPNKRFIL 647
             L   M +EG+ P  R+ L
Sbjct: 1126 NLRIKMKNEGHSPKMRYAL 1144



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/571 (28%), Positives = 277/571 (48%), Gaps = 20/571 (3%)

Query: 6   VFLKLNSNFPFCS-SLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP 64
            F KL+ N   C    V      +     S  S+L L+ Y   S +L + A+      G 
Sbjct: 415 AFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAY---SSILQLCAEHKCLQEGK 471

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV-SW 123
            +H+                +P   V+   L+  Y+ C  +R   ++FD +   + V  W
Sbjct: 472 MVHSVISSN----------GIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLW 521

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N M+S + + G++      FK+  +LG    +  +F+ IL            K IH  VY
Sbjct: 522 NLMMSEYAKIGDYRESIYLFKKMQKLGITG-NSYTFSCILKCFATLGRVGECKRIHGCVY 580

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G+    TV N+LI +YFK G   S  K+F E+  R+V++W ++ISG V N      L+
Sbjct: 581 KLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALE 640

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
            FV+M +  +  +  T ++SV AC+ + +L  GR +HG   K     ++   + L+DMYS
Sbjct: 641 FFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYS 700

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG++ DA Q FE   +   VS T ++  + + G  ++A++LF +M   G+  D   +++
Sbjct: 701 KCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTS 760

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           VL       SL  G+ +H+ I K++      V+N L++MY+KCG +E++  VFS++  ++
Sbjct: 761 VLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKD 820

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            VSWN+MI  ++++    +AL+L+ EM+ E   P  +T   LL AC  +  +  G     
Sbjct: 821 IVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHG 879

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            +   +  S        ++DM  + G L+ AR   + +P K D++ W  ++  C +HG  
Sbjct: 880 CILR-NGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMHGLG 937

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
                  +K+ +A    P      + +Y+CS
Sbjct: 938 NEAIATFQKMRIAGI-KPDEITFTSILYACS 967


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/639 (33%), Positives = 327/639 (51%), Gaps = 74/639 (11%)

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           P+  +N +        WNSLLS Y K  ++ +A  +F +MP RD VSW  M+ G  R+G 
Sbjct: 275 PYARRNAFT-------WNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGR 327

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           F      F   +  GF    Q + T +LS+C   E   V + +H  V   G    V V N
Sbjct: 328 FWDAVKTFLDMVSEGFAP-SQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVAN 386

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNV-------------------------------IT 224
           +++  Y KCG + + R VF  M+VR+V                               ++
Sbjct: 387 SVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVS 446

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W  +I+G  QN L    LK F +M     + P++ T  S + AC+ L+ L  G+Q+H  +
Sbjct: 447 WNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYI 506

Query: 284 WKLALQSDLCIESALMDMYSKCGSVE---------------------------------D 310
            +  +     I +AL+  Y+K GSVE                                  
Sbjct: 507 LRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQ 566

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A +IF+     D ++ T ++VG+ QNG  +EAM+LF  M+  G E + + ++AVL     
Sbjct: 567 AREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACAS 626

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNS 429
              L  GKQIH   I+S    +  V+N +I +Y++ G +  + +VF ++  R  +++W S
Sbjct: 627 LAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTS 686

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI A A+HG G +A+ L+EEM   GV+P  +T++ +L AC+H G V+KG  + + M   H
Sbjct: 687 MIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEH 746

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I P+  HYAC+VD+  RAGLL EA  FI+RMPV PD +VW +LL AC +  ++++ + A
Sbjct: 747 GIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELA 806

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           A KL    P +   Y  +AN+YS  GRW + A+  K  K+ GV KETG SW  +  +VH 
Sbjct: 807 AGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHV 866

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F  DD +HPQ D+I+   AE+   +   G+VP+   +LH
Sbjct: 867 FGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLH 905



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 350 VKAGIEIDPNMVSAVLGVFG-VDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCG 407
           VKAG+ +   + + +L  +  V  S G  ++   L     +   N F  N L+++Y+K G
Sbjct: 236 VKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSG 295

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            L D+  VF+ M  R++VSW  MI    R G  + A++ + +M  EG  P+  T  ++L 
Sbjct: 296 RLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLS 355

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC------VVDMVGRAGLLIEARSFIERM 521
           +C+        ME      +VH    +    +C      V+ M G+ G    AR+  ERM
Sbjct: 356 SCA-------AMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM 408

Query: 522 PVKPDVLVWQALLGACSIHGDSEMG 546
            V+  V  W  ++   +  G  E+ 
Sbjct: 409 QVR-SVSSWNVMVSLYTHQGRMELA 432


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/601 (32%), Positives = 327/601 (54%), Gaps = 15/601 (2%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            LLS  A    +  G  +H   +++           + +   + N+L++ Y +C  +  A 
Sbjct: 437  LLSACANSSAYADGKMIHEDILRS----------GIKSNGHLANALMNMYRRCGSLMEAQ 486

Query: 110  KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             +F+    RD +SWN+M++G  ++G ++  +  F+  ++    + D  +F  +LS C   
Sbjct: 487  NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ-EMQNEELEPDNITFASVLSGCKNP 545

Query: 170  ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            E   + K IH  +   G + +V +GNALI  Y +CGS    R VF  ++ R+V++WTA+I
Sbjct: 546  EALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMI 605

Query: 230  SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
             G        + ++LF +M      P   T+ S +  C+    L EG+++   +     +
Sbjct: 606  GGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYE 665

Query: 290  SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
             D  + +AL+  YSK GS+ DA ++F+     D VS   I+ G+AQNG  + A++   +M
Sbjct: 666  LDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQM 725

Query: 350  VKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
             +   ++ PN  S  ++L      ++L  GK++H+ I+K     +  V   LI+MY+KCG
Sbjct: 726  QEQ--DVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCG 783

Query: 408  DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
               ++ +VF  +  +N V+WN+MI A+A+HG   KAL  +  M+ EG++P   TF S+L 
Sbjct: 784  SQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILS 843

Query: 468  ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
            AC+H GLV +G +   SM   + + P  EHY C+V ++GRA    EA + I +MP  PD 
Sbjct: 844  ACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDA 903

Query: 528  LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
             VW+ LLGAC IHG+  + ++AA         +PA YIL++N+Y+ +GRW + AK  + M
Sbjct: 904  AVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVM 963

Query: 588  KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            +  G+ KE G SWIE++  +H F+  D+ HP+   I+  L  L   M + GY P+ + +L
Sbjct: 964  EGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVL 1023

Query: 648  H 648
            H
Sbjct: 1024 H 1024



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 246/451 (54%), Gaps = 3/451 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L+S Y +C  +  A +LF  MP RD +SWN +++G+ R  +       +K+    G
Sbjct: 367 IGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG 426

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +  + +F  +LSAC  S      KMIH  +   G +    + NAL+  Y +CGS    
Sbjct: 427 V-KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEA 485

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF   + R+VI+W ++I+G  Q+  YE   KLF +M    + P+++T+ S +  C   
Sbjct: 486 QNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNP 545

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +AL  G+QIHG + +  LQ D+ + +AL++MY +CGS++DA  +F   +  D +S T ++
Sbjct: 546 EALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMI 605

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G A  G + +A++LF +M   G     +  S++L V      L  GK++ + I+ S + 
Sbjct: 606 GGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYE 665

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V N LI+ YSK G + D+ +VF +M  R+ VSWN +IA +A++G G  A+E   +M
Sbjct: 666 LDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQM 725

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + + V P   +F+SLL+ACS    + +G      + +  ++       A ++ M  + G 
Sbjct: 726 QEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK-RKLQGDVRVGAALISMYAKCGS 784

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             EA+   + + ++ +V+ W A++ A + HG
Sbjct: 785 QGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/462 (30%), Positives = 246/462 (53%), Gaps = 7/462 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+KC  + +A ++F +MP RD +SWN+++S + + G     F  F+     GF 
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ ++  IL+AC         K IH  +   GY+ +  V N+L++ Y KCG     R+
Sbjct: 126 P-NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQ 184

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  R+V+++  ++    Q    +E L LF +M    I+P+ +TY++ + A +    
Sbjct: 185 VFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSM 244

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L EG++IH +  +  L SD+ + +AL+ M  +CG V+ A Q F+   + D V    ++  
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAA 304

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G   EA + + +M   G+ ++     ++L       +L  GK IHS I +   +S+
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N LI+MY++CGDL  + ++F  M  R+ +SWN++IA +AR  +  +A+ LY++M+ 
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQS 424

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV+P  VTFL LL AC++      G    + +     I         +++M  R G L+
Sbjct: 425 EGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG-IKSNGHLANALMNMYRRCGSLM 483

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           EA++  E    + DV+ W +++   + HG  E     A KLF
Sbjct: 484 EAQNVFEGTQAR-DVISWNSMIAGHAQHGSYE----TAYKLF 520



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 249/477 (52%), Gaps = 14/477 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++  ++C  + +A + F     RD V +N +++   ++G     F  + R    G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              L++ ++  IL+AC  S+     K+IH  +   G+  +V +GNALI+ Y +CG     
Sbjct: 326 V-ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F  M  R++I+W A+I+G  + +   E ++L+ +M    + P  +T+L  + AC+  
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            A  +G+ IH  + +  ++S+  + +ALM+MY +CGS+ +A  +FE  +  D +S   ++
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G AQ+G  E A +LF +M    +E D    ++VL       +L LGKQIH  I +S   
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  + N LINMY +CG L+D+  VF  +  R+ +SW +MI   A  G   KA+EL+ +M
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVG 506
           + EG  P   TF S+L  C+    +++G +     L S  E+      A     ++    
Sbjct: 625 QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA-----LISAYS 679

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++G + +AR   ++MP + D++ W  ++   + +G   +G+ A E  +  Q     P
Sbjct: 680 KSGSMTDAREVFDKMPSR-DIVSWNKIIAGYAQNG---LGQTAVEFAYQMQEQDVVP 732



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 239/480 (49%), Gaps = 13/480 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +H+  IK     D +          + NSLLS Y KC  +  A ++F  +  RD VS
Sbjct: 147 GKKIHSQIIKAGYQRDPR----------VQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +NTM+  + +        G F +    G    D+ ++  +L A     +    K IH L 
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGI-SPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   ++ VG AL+T   +CG   S ++ F     R+V+ + A+I+ L Q+    E  
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAF 315

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + + +M    +  N  TYLS + ACS  +AL  G+ IH  + +    SD+ I +AL+ MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++CG +  A ++F    + D +S   I+ G+A+     EAM+L+ +M   G++       
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            +L      ++   GK IH  I++S   SN  + N L+NMY +CG L ++  VF     R
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR 495

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + +SWNSMIA  A+HG+   A +L++EM+ E +EP ++TF S+L  C +   +  G +  
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIH 555

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             +TE   +         +++M  R G L +AR+    +  + DV+ W A++G C+  G+
Sbjct: 556 GRITESG-LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGCADQGE 613



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 193/384 (50%), Gaps = 2/384 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++A++  +L  C R  L   +K IH  +       ++ + N LI  Y KC S     +
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  R+VI+W ++IS   Q    ++  +LF +M      PN +TY+S + AC     
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G++IH  + K   Q D  ++++L+ MY KCG +  A Q+F      D VS   +L  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ  + +E + LF +M   GI  D      +L  F   + L  GK+IH L ++    S+
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V   L+ M  +CGD++ + + F   A R+ V +N++IAA A+HG+  +A E Y  M+ 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV     T+LS+L+ACS    +  G + + S       S   +    ++ M  R G L 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           +AR     MP K D++ W A++  
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAG 405


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/617 (33%), Positives = 318/617 (51%), Gaps = 67/617 (10%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            + K  ++ +A  +F +MP RD VSW  MV G  R G F             GF    Q 
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPT-QF 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           + T +LS+C  ++   V + +H  V   G    V V N+++  Y KCG S +   VF  M
Sbjct: 60  TLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 218 RVRNV-------------------------------ITWTAVISGLVQNQLYEEGLKLFV 246
            VR+V                               ++W A+I+G  QN L  + LKLF 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 247 KM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           +M H   + P+  T  S + AC+ L  +  G+Q+H  + +  +  +  + +AL+  Y+K 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 306 GSVEDAWQIF--------------------------EFAEEL-------DGVSMTVILVG 332
           GSVE+A +I                           E A E+       D V+ T ++VG
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + QNG  +EA+ LF  M+  G E +   ++AVL V      L  GKQIH   I+S    +
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQS 359

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-SVSWNSMIAAFARHGNGFKALELYEEMK 451
             V+N +I MY++ G    + ++F ++  R  +++W SMI A A+HG G +A+ L+EEM 
Sbjct: 360 SSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             GVEP  +T++ +L ACSH G VN+G  +   +   H+I+P   HYAC+VD++ RAGL 
Sbjct: 420 RAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLF 479

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA+ FI RMPV+PD + W +LL AC +H ++E+ + AAEKL    P++   Y  +AN+Y
Sbjct: 480 SEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVY 539

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           S  GRW + A+  K  KE  V KETG SW  I  ++H F  DD +HPQ D ++ + A + 
Sbjct: 540 SACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMW 599

Query: 632 RLMIDEGYVPNKRFILH 648
             +   G+VP+ + +LH
Sbjct: 600 EEIKGAGFVPDLQSVLH 616



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 189/405 (46%), Gaps = 40/405 (9%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN+++S      +M  A  LF+ MP R  VSWN M++G+ +NG        F R L    
Sbjct: 127 WNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESS 186

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D+ + T +LSAC       + K +H  +          V NALI++Y K GS  + R
Sbjct: 187 MAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENAR 246

Query: 212 KV---------------------------------FGEMRVRNVITWTAVISGLVQNQLY 238
           ++                                 FG M  R+V+ WTA+I G  QN   
Sbjct: 247 RIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRN 306

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           +E + LF  M      PNS T  + +  C+ L  L  G+QIH    +  L+    + +A+
Sbjct: 307 DEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAI 366

Query: 299 MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           + MY++ GS   A ++F +     + ++ T ++V  AQ+G  EEA+ LF +M++AG+E D
Sbjct: 367 ITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPD 426

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKV 415
                 VL        +  GK+ +   IK++    P +++   ++++ ++ G   ++ + 
Sbjct: 427 RITYVGVLSACSHAGFVNEGKRYYDQ-IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEF 485

Query: 416 FSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
             RM    ++++W S+++A   H N   A EL  E KL  ++P +
Sbjct: 486 IRRMPVEPDAIAWGSLLSACRVHKNAELA-ELAAE-KLLSIDPNN 528



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 166/365 (45%), Gaps = 32/365 (8%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQ------NVY----NVP 86
           S +  D +  I+ +LS  A  G+  +G  +HA  ++T   +++Q      + Y    +V 
Sbjct: 185 SSMAPDEFT-ITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVE 243

Query: 87  NATVI-------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           NA  I             + +LL  Y+K   M +A ++F  M  RD V+W  M+ G+ +N
Sbjct: 244 NARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQN 303

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G  D     F+  +  G  + +  +   +LS C         K IHC       E+  +V
Sbjct: 304 GRNDEAIDLFRSMITCG-PEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSV 362

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
            NA+IT Y + GS    R++F ++  R   ITWT++I  L Q+   EE + LF +M    
Sbjct: 363 SNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAG 422

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           + P+ +TY+  + ACS    + EG++ +  I  +  +  ++   + ++D+ ++ G   +A
Sbjct: 423 VEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEA 482

Query: 312 WQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
            + I     E D ++   +L     +   E A     K+    + IDPN   A   +  V
Sbjct: 483 QEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKL----LSIDPNNSGAYSAIANV 538

Query: 371 DTSLG 375
            ++ G
Sbjct: 539 YSACG 543


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/561 (37%), Positives = 322/561 (57%), Gaps = 9/561 (1%)

Query: 94  SLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SL+  ++K +    NA K+FD M   + V+W  M++  ++ G       FF   +  GF 
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF- 265

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSS 209
           + D+ + + + SAC   E   + + +H      G  ++V    +L+  Y KC   GS   
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADDVEC--SLVDMYAKCSADGSVDD 323

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            RKVF  M+  +V++WTA+I+G +QN  L  E + LF +M   G + PN  T+ S+  AC
Sbjct: 324 CRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             +     G+Q+ G  +K  L S+  + ++++ M+ KC  +EDA   FE   E + VS  
Sbjct: 384 GNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYN 443

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             L G  +N   E A +L  ++ +  + +     +++L       SL  G+QIHS ++K 
Sbjct: 444 TFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKL 503

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + N  V N LI+MYSKCG ++ + +VFS M  RN +SW SMI  FA+HG   + LE +
Sbjct: 504 GLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETF 563

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M  EGV+P +VT++++L ACSHVGLV++G     SM E H+I P+ EHYAC+VD++ R
Sbjct: 564 NQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL +A  FI  MP + DVLVW+  LGAC +H ++E+GK AA K+    P+ PA YI +
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQL 683

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+ +G+W+E  +  ++MKE  + KE G SWIE+  +VH F V D  HP A  I+  L
Sbjct: 684 SNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDEL 743

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVP+   +LH
Sbjct: 744 DWLITEIKRCGYVPDTDLVLH 764



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 151/514 (29%), Positives = 253/514 (49%), Gaps = 33/514 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V  S LL    +  HF LG  +HA  I+          + +   +V++NSL+S Y K   
Sbjct: 63  VTFSSLLKSCIRARHFRLGKLVHARLIE----------FEIEPDSVLYNSLISLYSKSGD 112

Query: 105 MRNAVKLFDDMPM---RDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFYQLDQASFT 160
           +  A  +F+ M     RD VSW+ M++ F  NG EFD     F   LE+G    D   +T
Sbjct: 113 LTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFD-AIKLFVEFLEMGLVPNDYC-YT 170

Query: 161 IILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS-SSGRKVFGEMR 218
            ++ AC  S+   V ++I   +   G +E +V VG +LI  + K  +S  +  KVF +M 
Sbjct: 171 AVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMS 230

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
             NV+TWT +I+  +Q     E ++ F+ M L     +  T  S   AC+ L+ L  GRQ
Sbjct: 231 ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQ 290

Query: 279 IHGILWKLALQSDLCIESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +H    +  L  D  +E +L+DMY+KC   GSV+D  ++F+  ++   +S T ++ G+ Q
Sbjct: 291 LHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQ 348

Query: 336 N-GFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           N     EA+ LF +M+  G  ++PN    S+     G  +   +GKQ+     K    SN
Sbjct: 349 NCNLATEAINLFSEMITQG-HVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASN 407

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+N +I+M+ KC  +ED+   F  ++ +N VS+N+ +    R+ +   A EL  E+  
Sbjct: 408 SSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAE 467

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGL 510
             +  +  TF SLL   ++VG + KG +     ++V ++        C  ++ M  + G 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSLRKGEQI---HSQVLKLGLSCNQPVCNALISMYSKCGS 524

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +  A      M  + +V+ W +++   + HG +E
Sbjct: 525 IDTASRVFSLMDNR-NVISWTSMITGFAKHGFAE 557



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/344 (31%), Positives = 187/344 (54%), Gaps = 14/344 (4%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +D  +F+ +L +C R+    + K++H  +     E +  + N+LI+ Y K G  + 
Sbjct: 56  GIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTK 115

Query: 210 GRKVF---GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVM 265
            + VF   G    R+V++W+A+++    N    + +KLFV+ + +GL+ PN   Y + + 
Sbjct: 116 AKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLV-PNDYCYTAVIR 174

Query: 266 ACSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDG 323
           ACS    +  GR I G L K    +SD+C+  +L+DM+ K   S E+A+++F+   EL+ 
Sbjct: 175 ACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNV 234

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+ T+++    Q GF  EA++ F+ MV +G E D   +S+V        +L LG+Q+HS 
Sbjct: 235 VTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSW 294

Query: 384 IIKSDFTSNPFVNNGLINMYSKC---GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN- 439
            I+S    +  V   L++MY+KC   G ++D  KVF RM   + +SW ++I  + ++ N 
Sbjct: 295 AIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNL 352

Query: 440 GFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFL 482
             +A+ L+ EM  +G VEP   TF S   AC +V     G + L
Sbjct: 353 ATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVL 396



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 13/129 (10%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LLS  A  G    G  +H+  +K            +     + N+L+S Y KC  +  
Sbjct: 478 ASLLSGVANVGSLRKGEQIHSQVLK----------LGLSCNQPVCNALISMYSKCGSIDT 527

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++F  M  R+ +SW +M++GF ++G  +     F +  + G  + ++ ++  ILSAC 
Sbjct: 528 ASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGV-KPNEVTYVAILSAC- 585

Query: 168 RSELSLVSK 176
            S + LVS+
Sbjct: 586 -SHVGLVSE 593


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 311/561 (55%), Gaps = 6/561 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KC +   A K+FD MP R+ VSW  ++SG + NG+ +     F      G Y
Sbjct: 408 NYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIY 467

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ +F+  L AC           IH      G+E  V VGN+L+  Y KCG  +   K
Sbjct: 468 P-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 526

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN--PNSLTYLSSVMACSGL 270
           VF  M  R++I+W A+I+G V        L  F  M    I   P+  T  S + ACS  
Sbjct: 527 VFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSST 586

Query: 271 QALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             +  G+QIHG L +      S   I  +L+D+Y KCG++  A + F+  +E   +S + 
Sbjct: 587 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSS 646

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +++G+AQ G   EAM LF ++ +   +ID  ++S+++GVF     L  GKQ+ +L++K  
Sbjct: 647 LILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLP 706

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 V+N L++MY KCG ++++ K F+ M  ++ +SW  MI  + +HG G KA+ ++ 
Sbjct: 707 SGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFN 766

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M    +EP +V +L++L ACSH G++ +G E    + E   I PR EHYACVVD++GRA
Sbjct: 767 KMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRA 826

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+  ++ MP+KP+V +WQ LL  C +HGD E+GK   + L      +PA Y++M+
Sbjct: 827 GRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMS 886

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y  +G W E+  A +     G+ KE G+SW+EIE++VH F   +  HP    I   L 
Sbjct: 887 NLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLK 946

Query: 629 ELLRLMIDE-GYVPNKRFILH 648
           E+ R + +E GYV   +  LH
Sbjct: 947 EVERRLREELGYVYGLKHELH 967



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 194/400 (48%), Gaps = 17/400 (4%)

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
           L G    +   N LI  Y KC       KVF  M  RNV++WTA++SG V N      L 
Sbjct: 397 LSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLS 456

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF +M    I PN  T+ +++ AC  L AL +G QIHG   K+  +  + + ++L+DMYS
Sbjct: 457 LFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYS 516

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MV 361
           KCG + +A ++F +      +S   ++ G+   G+   A+  F  M +A I+  P+   +
Sbjct: 517 KCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTL 576

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           +++L        +  GKQIH  +++S F   S+  +   L+++Y KCG+L  + K F ++
Sbjct: 577 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQI 636

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             +  +SW+S+I  +A+ G+  +A+ L++ ++    +       S++   +   L+ +G 
Sbjct: 637 KEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQG- 695

Query: 480 EFLKSMTEVHRISPRAEHYAC---VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              K M  +    P     +    +VDM  + GL+ EA      M +K DV+ W  ++  
Sbjct: 696 ---KQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLK-DVISWTVMITG 751

Query: 537 CSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
              HG   +GK A       L     P     +A + +CS
Sbjct: 752 YGKHG---LGKKAVSIFNKMLRHNIEPDEVCYLAVLSACS 788



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 195/389 (50%), Gaps = 16/389 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y KC ++  A K+F  M  R  +SWN M++G++  G        F    E  
Sbjct: 507 VGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAK 566

Query: 151 FYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYE--EEVTVGNALITSYFKCGSS 207
             +  D+ + T +L AC  + +    K IH  +   G+      T+  +L+  Y KCG+ 
Sbjct: 567 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNL 626

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            S RK F +++ + +I+W+++I G  Q   + E + LF ++       +S    S +   
Sbjct: 627 FSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVF 686

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L +G+Q+  ++ KL    +  + ++L+DMY KCG V++A + F   +  D +S T
Sbjct: 687 ADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWT 746

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           V++ G+ ++G  ++A+ +F KM++  IE D     AVL        +  G+++ S ++++
Sbjct: 747 VMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLET 806

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKAL 444
                P V +   ++++  + G L+++  +   M  + +V  W ++++    HG+    +
Sbjct: 807 QGI-KPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGD----I 861

Query: 445 ELYEE-----MKLEGVEPTDVTFLSLLHA 468
           EL +E     ++++G  P +   +S L+ 
Sbjct: 862 ELGKEVGKILLRIDGKNPANYVMMSNLYG 890



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 134/266 (50%), Gaps = 10/266 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL   +  G  + G  +H   +++         ++ P++  I  SL+  Y+KC  + 
Sbjct: 576 LTSLLKACSSTGMIYAGKQIHGFLVRS--------GFHCPSSATITGSLVDLYVKCGNLF 627

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K FD +  +  +SW++++ G+ + G+F    G FKR  EL   Q+D    + I+   
Sbjct: 628 SARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELS-SQIDSFVLSSIIGVF 686

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
               L    K +  LV       E +V N+L+  Y KCG      K F EM++++VI+WT
Sbjct: 687 ADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWT 746

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWK 285
            +I+G  ++ L ++ + +F KM    I P+ + YL+ + ACS    + EG ++   +L  
Sbjct: 747 VMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLET 806

Query: 286 LALQSDLCIESALMDMYSKCGSVEDA 311
             ++  +   + ++D+  + G +++A
Sbjct: 807 QGIKPRVEHYACVVDLLGRAGRLKEA 832


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 320/560 (57%), Gaps = 9/560 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF---GFFKRS-LE 148
           N+L+  Y K   + +A+ +F+ +   D VSWN +++G + +   +      G  KRS + 
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC 356

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              + L  A     L AC    L  + + +H  +     E ++ V   L+  Y KC    
Sbjct: 357 PNIFTLSSA-----LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R  F  +  +++I W A+ISG  Q     E L LFV+MH   I  N  T  + + + +
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GLQ +   RQ+HG+  K    SD+ + ++L+D Y KC  VEDA +IFE     D VS T 
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  +AQ G  EEA++LF++M    ++ D  + S++L      ++   GKQ+H  I+K  
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 591

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  + F  N L+NMY+KCG ++D+ + FS +  R  VSW++MI   A+HG+G +AL+L+ 
Sbjct: 592 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 651

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M  EGV P  +T +S+L AC+H GLV +   + +SM E+    P  EHYAC++D++GRA
Sbjct: 652 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 711

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G + EA   + +MP + +  VW ALLGA  IH D E+G+ AAE LF+ +P+    ++L+A
Sbjct: 712 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 771

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G+W+  A+  + M++  V KE G+SWIE++ +V++F+V D+ H ++  I+  L 
Sbjct: 772 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLD 831

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL  LM   GYVP     LH
Sbjct: 832 ELSDLMDKAGYVPMVEIDLH 851



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 265/490 (54%), Gaps = 16/490 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y KCD+  ++ +LFD++P R+ VSWN + S +++        G F   +  G
Sbjct: 194 VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG 253

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ S + +++AC     S   K+IH  +   GY+ +    NAL+  Y K G  +  
Sbjct: 254 I-KPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADA 312

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF +++  ++++W AVI+G V ++ +E+ L+L  +M    I PN  T  S++ AC+G+
Sbjct: 313 ISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGM 372

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                GRQ+H  L K+ ++SDL +   L+DMYSKC  +EDA   F    E D ++   I+
Sbjct: 373 GLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAII 432

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G++Q   + EA+ LFV+M K GI  +   +S +L        + + +Q+H L +KS F 
Sbjct: 433 SGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFH 492

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ +V N LI+ Y KC  +ED+ ++F      + VS+ SMI A+A++G G +AL+L+ EM
Sbjct: 493 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 552

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRA 508
           +   ++P      SLL+AC+++    +G +       + +     + +A   +V+M  + 
Sbjct: 553 QDMELKPDRFVCSSLLNACANLSAFEQGKQL---HVHILKYGFVLDIFAGNSLVNMYAKC 609

Query: 509 GLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDSPAPY 564
           G + +A R+F E    +  ++ W A++G  + HG        A +LF   L +  SP   
Sbjct: 610 GSIDDAGRAFSEL--TERGIVSWSAMIGGLAQHGHGRQ----ALQLFNQMLKEGVSPNHI 663

Query: 565 ILMANIYSCS 574
            L++ + +C+
Sbjct: 664 TLVSVLGACN 673



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 281/565 (49%), Gaps = 38/565 (6%)

Query: 25  ITKIIQDPTSSTSKLVLD------NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFD 78
           + +  QDP ++    ++D        V  S+LLS          G  +HA   K+     
Sbjct: 31  VPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS----- 85

Query: 79  NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
                 + +   I N L++ Y KC     A KL D+    D VSW+ ++SG+ +NG    
Sbjct: 86  -----GLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGG 140

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
               F     LG  + ++ +F+ +L AC   +   + K +H +V + G+E +V V N L+
Sbjct: 141 ALMAFHEMHLLGV-KCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y KC      +++F E+  RNV++W A+ S  VQ     E + LF +M L  I PN  
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           +  S V AC+GL+    G+ IHG L KL    D    +AL+DMY+K G + DA  +FE  
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           ++ D VS   ++ G   +   E+A++L  +M ++GI  +   +S+ L          LG+
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGR 379

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+HS ++K D  S+ FV+ GL++MYSKC  LED+   F+ +  ++ ++WN++I+ ++++ 
Sbjct: 380 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 439

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              +AL L+ EM  EG+     T  ++L + +       G++ +    +VH +S ++  +
Sbjct: 440 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCRQVHGLSVKSGFH 492

Query: 499 A------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           +       ++D  G+   + +A    E   +  D++ + +++ A + +G  E     A K
Sbjct: 493 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIG-DLVSFTSMITAYAQYGQGE----EALK 547

Query: 553 LFLAQPD---SPAPYILMANIYSCS 574
           LFL   D    P  ++  + + +C+
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACA 572



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 193/374 (51%), Gaps = 14/374 (3%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G   P S++Y   +  C   ++L  G QIH  + K  L  D  I + L+++YSKC +   
Sbjct: 50  GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGY 109

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++ + + E D VS + ++ G+AQNG    A+  F +M   G++ +    S+VL    +
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L +GKQ+H +++ S F  + FV N L+ MY+KC +  DS ++F  +  RN VSWN++
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-H 489
            + + +     +A+ L+ EM L G++P + +  S+++AC+ +   ++G      + ++ +
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
              P + +   +VDM  + G L +A S  E++  +PD++ W A++  C +H   E  + A
Sbjct: 290 DWDPFSAN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLH---EHHEQA 343

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
            E L   +     P     NI++ S   K  A A   +KE+G    + +  +++E  +  
Sbjct: 344 LELLGQMKRSGICP-----NIFTLSSALK--ACAGMGLKELGRQLHSSLMKMDMESDLFV 396

Query: 610 FVVDDKMHPQADTI 623
            V    M+ + D +
Sbjct: 397 SVGLVDMYSKCDLL 410


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 339/594 (57%), Gaps = 46/594 (7%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +P+  +I WN +LS Y+K   +  A  LF+ MP +D VSWN M+SGF +NG  +     F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176

Query: 144 KRSLELGFYQLDQASFTIILSA------CDRSELSLVSKM------IHCLVYLCGYEEEV 191
            + L       ++ S+  +LSA       + +     SKM       +CL  + GY  + 
Sbjct: 177 DQML-----VKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCL--MGGYVRKK 229

Query: 192 TVGNA-----------------LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            + +A                 +IT Y + G  S  R++F E+ +R+V  WTA++SG VQ
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQ 289

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N + +E  ++F +M       N +++ + +      Q + + R+    L+      +   
Sbjct: 290 NGMLDEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARE----LFDQMPSRNTSS 341

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + ++  Y++CG+++ A  +F+   + D +S   ++ G+AQ+G  EEA+ LF+KM + G 
Sbjct: 342 WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            ++ + ++  L       +L LGKQ+H  ++K+ F +     N L+ MY KCG +E++  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VF  +  ++ VSWN+MIA +ARHG G +AL L+E MK+  ++P DVT + +L ACSH G 
Sbjct: 462 VFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGF 520

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V+KGME+  SM + + I+  A+HY C++D++GRAG L EA + ++ MP  PD   W ALL
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
           GA  IHGD+E+G+ AAEK+F  +PD+   Y+L++N+Y+ SGRW+E  +   +M++ GV K
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKK 640

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             G SW+EI+ + H F V D  HP+A+ I+  L EL   +  +G+V + + +LH
Sbjct: 641 VPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLH 694



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 225/466 (48%), Gaps = 45/466 (9%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V +  V WN  +S Y++  Q  +A+ +F+ M  R TV++N M+SG+L N +FD     F+
Sbjct: 56  VDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFE 115

Query: 145 RSLELGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           +         D  S+ ++LS       LS    + + +      E++V   NA+++ + +
Sbjct: 116 K-----MPDRDLISWNVMLSGYVKNGNLSAARALFNQMP-----EKDVVSWNAMLSGFAQ 165

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLGLINPNSLT--Y 260
            G     RK+F +M V+N I+W  ++S  VQN   E+  +LF  KM   +++ N L   Y
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +         + L + R +     ++ ++  +   + ++  Y++ G + +A ++FE    
Sbjct: 226 VRK-------KRLDDARSLFD---RMPVRDKISW-NIMITGYAQNGLLSEARRLFEELPI 274

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDTSLGLGKQ 379
            D  + T ++ GF QNG  +EA ++F +M +   E+  N M++  +    ++ +  L  Q
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN-EVSWNAMIAGYVQSQQIEKARELFDQ 333

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           + S         N    N ++  Y++CG+++ +  +F  M  R+ +SW +MI+ +A+ G 
Sbjct: 334 MPS--------RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRA 495
             +AL L+ +MK +G           L +C+ +  +  G +     +K+  +   I+  A
Sbjct: 386 SEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNA 445

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                ++ M G+ G + EA    E +  K D++ W  ++   + HG
Sbjct: 446 -----LLAMYGKCGSIEEAFDVFEDITEK-DIVSWNTMIAGYARHG 485



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K  E FD     N    T  WN++++ Y +C  +  A  LFD+MP RD +SW  M+SG+ 
Sbjct: 326 KARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G+ +     F +    G   L++++    LS+C       + K +H  +   G++   
Sbjct: 382 QSGQSEEALHLFIKMKRDGGI-LNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGY 440

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
             GNAL+  Y KCGS      VF ++  +++++W  +I+G  ++   +E L LF  M + 
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM- 499

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVED 310
            I P+ +T +  + ACS    + +G +    +++   + ++    + ++D+  + G +++
Sbjct: 500 TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDE 559

Query: 311 A 311
           A
Sbjct: 560 A 560



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K   S I+ SD        N  I+ Y + G  E ++ VF+ M  R++V++N+MI+ +  +
Sbjct: 49  KNSDSTIVDSDIVKW----NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSN 104

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                A +++E+M    +    +++  +L      G ++        M E   +S     
Sbjct: 105 NKFDCARKVFEKMPDRDL----ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVS----- 155

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           +  ++    + G + EAR   ++M VK ++  W  LL A   +G  E     A +LF ++
Sbjct: 156 WNAMLSGFAQNGFVEEARKIFDQMLVKNEI-SWNGLLSAYVQNGRIE----DARRLFDSK 210

Query: 558 PD 559
            D
Sbjct: 211 MD 212


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 328/588 (55%), Gaps = 11/588 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG  LH+  +K+    D           ++  + L  Y KC +M +A K+   MP   
Sbjct: 298 LRLGKELHSHALKSAFGSD----------IIVGTATLDMYAKCGRMADAQKVLSSMPKCS 347

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S+N ++ G+ R+         F+  L+ G    D+ + +  L+AC      L  + +H
Sbjct: 348 LQSYNAIIVGYARSDRGFQALKSFQLLLKTGL-GFDEITLSGALNACASIRGDLEGRQVH 406

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L         + V NA++  Y KC + +    +F  M  R+ ++W A+I+   QN   E
Sbjct: 407 GLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEE 466

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E L  F  M    + P+  TY S + AC+G QAL  G +IH  + K  +  D  + +AL+
Sbjct: 467 ETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALV 526

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG +E A +I +  E+   VS   I+ GF+     E+A + F +M++ G+  D  
Sbjct: 527 DMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNF 586

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             +AVL       ++GLGKQIH+ IIK +  S+ ++ + L++MYSKCG+++DS  +F + 
Sbjct: 587 TYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKA 646

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+WN+M+  +A HG G +AL+L+E M+L  V+P   TF+S+L AC+H+GLV+KG+
Sbjct: 647 PNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGL 706

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +   M   + + P++EHY+C+VD++GR+G + EA + +++MP + D ++W+ LL  C I
Sbjct: 707 HYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKI 766

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+ E+ + A   L    P   +  +L++NIY+ +G W   ++  K M+   + KE G S
Sbjct: 767 HGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCS 826

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           WIE++ +VH+F+V DK HP+ + I+  L  L+  M   GY+P+   +L
Sbjct: 827 WIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDVLL 874



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 175/575 (30%), Positives = 282/575 (49%), Gaps = 51/575 (8%)

Query: 5   WVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSIS------AKEG 58
           W+  +L     F S    P   KI   PT++ S L  +     +++ + S      +K+ 
Sbjct: 9   WLLTRL-----FFSYHAIPLFKKIPPIPTNNFSTLAQNQTQPPAKIRTFSHIYQECSKQN 63

Query: 59  HFHLGPSLHASFIKT-FEP------------------------FDNQNVYNVPNATVIWN 93
             + G   HA  I   FEP                        FD   + +V    V +N
Sbjct: 64  SLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDV----VSYN 119

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-- 151
           S++S Y  C +M  A K F +MP RD VSWN+++SGFL+NGE       F   LE+G   
Sbjct: 120 SIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVF---LEMGRCG 176

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D+AS  ++L AC   E   +   +H LV   G++ +V  G+AL+  Y KC       
Sbjct: 177 VGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSL 236

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF E+  +N ++W+A+I+G VQN    EGL+LF +M    +  +   Y S   +C+ L 
Sbjct: 237 SVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALS 296

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL  G+++H    K A  SD+ + +A +DMY+KCG + DA ++     +    S   I+V
Sbjct: 297 ALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIV 356

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+A++    +A++ F  ++K G+  D   +S  L           G+Q+H L +KS   S
Sbjct: 357 GYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS 416

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N  V N +++MY KC  L ++  +F  M  R++VSWN++IAA  ++GN  + L  +  M 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAG 509
              +EP D T+ S+L AC+    +N GME     T + +     + +  A +VDM  + G
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEI---HTRIIKSGMGFDSFVGAALVDMYCKCG 533

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           ++ +A    +R   K  ++ W A++   S+   SE
Sbjct: 534 MIEKADKIHDRTEQKT-MVSWNAIISGFSLLQQSE 567



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/470 (28%), Positives = 239/470 (50%), Gaps = 17/470 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V  ++LL  Y KC ++ +++ +F ++P ++ VSW+ M++G ++N     G   FK    +
Sbjct: 217 VTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGV 276

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   + Q+ +  +  +C       + K +H       +  ++ VG A +  Y KCG  + 
Sbjct: 277 GV-GVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMAD 335

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK---LFVKMHLGLINPNSLTYLSSVMA 266
            +KV   M   ++ ++ A+I G  ++    + LK   L +K  LG    + +T   ++ A
Sbjct: 336 AQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGF---DEITLSGALNA 392

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ ++   EGRQ+HG+  K    S++C+ +A++DMY KC ++ +A  +F+  E  D VS 
Sbjct: 393 CASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSW 452

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+    QNG EEE +  F  M+ + +E D     +VL       +L  G +IH+ IIK
Sbjct: 453 NAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIK 512

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S    + FV   L++MY KCG +E + K+  R   +  VSWN++I+ F+       A + 
Sbjct: 513 SGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKF 572

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDM 504
           +  M   GV P + T+ ++L  C+++  V  G +      ++ +   +++ Y C  +VDM
Sbjct: 573 FSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQI---HAQIIKQELQSDVYICSTLVDM 629

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
             + G + +++   E+ P + D + W A+L   + HG  E     A KLF
Sbjct: 630 YSKCGNMQDSQLMFEKAPNR-DFVTWNAMLCGYAHHGLGE----EALKLF 674



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/454 (26%), Positives = 228/454 (50%), Gaps = 23/454 (5%)

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           C V+   Y  +V   N++I+ Y  CG     RK F EM  R+V++W +VISG +QN    
Sbjct: 104 CKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECR 163

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + + +F++M    +  +  +    + AC  L+    G Q+HG++ K     D+   SAL+
Sbjct: 164 KSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALL 223

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
            MY+KC  ++D+  +F    E + VS + ++ G  QN    E ++LF +M   G+ +  +
Sbjct: 224 GMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQS 283

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           + +++       ++L LGK++HS  +KS F S+  V    ++MY+KCG + D+ KV S M
Sbjct: 284 IYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSM 343

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
              +  S+N++I  +AR   GF+AL+ ++ +   G+   ++T    L+AC+ +    +G 
Sbjct: 344 PKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGR 403

Query: 480 EF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           +     +KS++  +     A     ++DM G+   L EA    + M  + D + W A++ 
Sbjct: 404 QVHGLAVKSISMSNICVANA-----ILDMYGKCKALAEASDLFDMME-RRDAVSWNAIIA 457

Query: 536 ACSIHGDSE--MGKYAAEKLFLAQPDSPAPYILMANIYSCSGR------WKERAKAIKRM 587
           AC  +G+ E  +  +A+      +PD    +   + + +C+GR       +   + IK  
Sbjct: 458 ACEQNGNEEETLAHFASMIHSRMEPDD---FTYGSVLKACAGRQALNTGMEIHTRIIK-- 512

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             MG D   G + +++  +       DK+H + +
Sbjct: 513 SGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTE 546


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 199/599 (33%), Positives = 328/599 (54%), Gaps = 12/599 (2%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           LS   +EG   LG   H   +K            + +   +  SL+  Y KC ++ +AV+
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKI----------GLGSDEFVCTSLIDMYAKCGEVDSAVR 169

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           ++D M   D  + N ++S + RNG F   F  F +   +G  + +  +++ +L+ C    
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMG-TRPNHYTYSTMLAVCGTIS 228

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                K +H  V    Y  E  VGNAL+T Y KCG       VF  +R RN+I+WTA I+
Sbjct: 229 AIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASIN 288

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G  Q+  +++ LK F  M    I PN  T+   + +C  ++   +GR  H  + K  + S
Sbjct: 289 GFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMAS 348

Query: 291 DLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            + + +A++DMYS  G +++A + F +       VS   ++ G+  N   E+AM+ F +M
Sbjct: 349 GVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRM 408

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           VK  +  +    S +        SL    QIHS +IKS+  SN  V + LI  Y++CG L
Sbjct: 409 VKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSL 468

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           E++++VF++++  + VSWNS+I A++++G+ +KA+ L  +M  EG +PT  TFL++L AC
Sbjct: 469 ENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSAC 528

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           SH GLV +G EF KSM + + I P   H +C+VD++GRAG L  A  FI+++ +KP   +
Sbjct: 529 SHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASI 588

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W+ LL AC  + + +M +Y AEK+   +P+    Y+ ++N+Y+  GRW +     + M++
Sbjct: 589 WRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQ 648

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             + KE G SWIE+  +++ F   DK HP+   ++  L +L+R + D GY P    +LH
Sbjct: 649 KEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQDIGYSPPTTTVLH 707



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/559 (30%), Positives = 272/559 (48%), Gaps = 50/559 (8%)

Query: 48   SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
            ++ + + A++   + G +LHA  +          +  +   T     L+SFY +C Q+ N
Sbjct: 807  AKAIDMYARDRALYRGRALHAHLV----------IIGLARLTYFAAKLMSFYTECGQLSN 856

Query: 108  AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            A KLFD +P  +   W  +     R G ++     F    + G  + +Q     IL AC 
Sbjct: 857  ARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGL-RPNQFVLPSILKACG 915

Query: 168  RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                    + +H ++    +E +  + +ALI  Y KCG      +VF  +  ++++   A
Sbjct: 916  HLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNA 975

Query: 228  VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
            ++SG  Q+    E L L  KM    + PN +++                           
Sbjct: 976  MVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSW--------------------------- 1008

Query: 288  LQSDLCIESALMDMYSKCGSVEDAWQIFEFAE----ELDGVSMTVILVGFAQNGFEEEAM 343
                    + L+  +S+ G      ++F        E D VS T ++ GF QN    E  
Sbjct: 1009 --------NTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGF 1060

Query: 344  QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
              F +M+  G       +S++L       +L  GK+IH   +      + +V + L++MY
Sbjct: 1061 DAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMY 1120

Query: 404  SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            +KCG + ++  +F  M  RN+V+WNS+I  +A HG   +A+EL+ +M+    +   +TF 
Sbjct: 1121 AKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 1180

Query: 464  SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            ++L+ACSH G+V  G      M E +RI PR EHYAC+VD++GRAG L EA   I+ MPV
Sbjct: 1181 AVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV 1240

Query: 524  KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            +PD  VW ALLGAC  HG+ E+ + AAE LF  +P+SP   +L++N+Y+ +GRW   AK 
Sbjct: 1241 EPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 1300

Query: 584  IKRMKEMGVDKETGISWIE 602
             K MK+    K  G SWIE
Sbjct: 1301 KKMMKQRKFGKFPGCSWIE 1319



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 147/278 (52%), Gaps = 2/278 (0%)

Query: 260 YLSSVMACSGLQALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           Y+ S ++  G +   E GR+ H  + K+ L SD  + ++L+DMY+KCG V+ A ++++  
Sbjct: 115 YVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKM 174

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
             LD  +   ++  +A+NGF  +A Q+F+++   G   +    S +L V G  +++  GK
Sbjct: 175 TSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGK 234

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+H+ ++K  + S   V N L+ +YSKCG +E++  VF  +  RN +SW + I  F +HG
Sbjct: 235 QLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHG 294

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +  KAL+ +  M+  G+EP + TF  +L +C  V     G  F   + +    S      
Sbjct: 295 DFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGT 354

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           A ++DM    G + EA    ++M      + W AL+  
Sbjct: 355 A-IIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 128/231 (55%)

Query: 256  NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
            +S TY  ++   +  +AL  GR +H  L  + L       + LM  Y++CG + +A ++F
Sbjct: 802  SSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLF 861

Query: 316  EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
            +     +     V+    A+ GF EEA+  F +M K G+  +  ++ ++L   G  +   
Sbjct: 862  DKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRR 921

Query: 376  LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
             G+ +H++I+K+ F S+ ++ + LI MYSKCG +E + +VF  +  ++ V  N+M++ +A
Sbjct: 922  TGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYA 981

Query: 436  RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
            +HG   +AL+L ++M+  GV+P  V++ +L+   S VG  +   E  + MT
Sbjct: 982  QHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMT 1032


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 312/548 (56%), Gaps = 1/548 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ Y KC  +  A K+FD MP RD V WNT++SG+ +NG          R  E G  + 
Sbjct: 216 VVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEG-KRP 274

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +   IL A        + + IH      G+E  V V  AL+  Y KCGS  + R +F
Sbjct: 275 DSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIF 334

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  + V++W ++I G VQN      +++F KM    +   ++T + ++ AC+ L  + 
Sbjct: 335 DRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVE 394

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +GR +H +L +L L SD+ + ++L+ MYSKC  V+ A +IFE  +    VS   +++G+A
Sbjct: 395 QGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA 454

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QNG   EA+  F KM    I+ D   + +V+      + L   K IH L+I++    N F
Sbjct: 455 QNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVF 514

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V   L++MY+KCG +  + K+F  M  R+  +WN+MI  +  HG G  ALEL+E+MK E 
Sbjct: 515 VATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEV 574

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           ++P +VTFL +L ACSH GLV +G ++  SM + + + P  +HY  +VD++GRA  L EA
Sbjct: 575 IKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEA 634

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             FI++MP++P + V+ A+LGAC IH + E+G+ AA ++F   PD    ++L+ANIY+ +
Sbjct: 635 WDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATA 694

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
             W + A+    M++ G+ K  G S +E++ +VH+F      HPQA  I+  L  L   +
Sbjct: 695 SMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRI 754

Query: 635 IDEGYVPN 642
              GY+P+
Sbjct: 755 KAAGYMPD 762



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 228/459 (49%), Gaps = 10/459 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVS--WNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           L+S + K   +  A ++F   P+ D +   ++TM+ G+ RN   D    FF R    G  
Sbjct: 115 LVSLFCKFGSLHEAARVFQ--PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            +   +FT +L  C  +      K IHC + + G+   V     ++  Y KC       K
Sbjct: 173 PV-VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYK 231

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M  R+++ W  +ISG  QN   +  L+L ++M      P+S+T +S + A + + +
Sbjct: 232 MFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS 291

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR IHG   +   +S + + +AL+DMYSKCGSV  A  IF+       VS   ++ G
Sbjct: 292 LRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDG 351

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + QNG    AM++F KM+   +E+    V   L        +  G+ +H L+ + +  S+
Sbjct: 352 YVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSD 411

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MYSKC  ++ + ++F  +  +  VSWN+MI  +A++G   +A++ + +M+L
Sbjct: 412 VSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQL 471

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           + ++P   T +S++ A + + ++ +  +++  +     +         +VDM  + G + 
Sbjct: 472 QNIKPDSFTMVSVIPALAELSVLPQA-KWIHGLVIRTCLDKNVFVATALVDMYAKCGAVH 530

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            AR   + M  +  V  W A++     HG   +GK A E
Sbjct: 531 TARKLFDMMDER-HVTTWNAMIDGYGTHG---LGKAALE 565



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 162/312 (51%), Gaps = 3/312 (0%)

Query: 170 ELSLVSKMIHCLVYLC---GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           EL    K +H  + L    G   E      L++ + K GS     +VF  +  +    + 
Sbjct: 85  ELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYH 144

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            ++ G  +N   ++ +  F +M    + P    +   +  C     L +G++IH  L   
Sbjct: 145 TMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVN 204

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              S++   + +++MY+KC  VE+A+++F+   E D V    I+ G+AQNGF + A++L 
Sbjct: 205 GFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELV 264

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++M + G   D   + ++L       SL +G+ IH   +++ F S   V+  L++MYSKC
Sbjct: 265 LRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKC 324

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  +  +F RM  +  VSWNSMI  + ++G+   A+E++++M  E VE T+VT +  L
Sbjct: 325 GSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGAL 384

Query: 467 HACSHVGLVNKG 478
           HAC+ +G V +G
Sbjct: 385 HACADLGDVEQG 396



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 218/434 (50%), Gaps = 35/434 (8%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCD 103
           + I  +L   A  G   +G S+H   ++  FE F N           +  +L+  Y KC 
Sbjct: 277 ITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVN-----------VSTALVDMYSKCG 325

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII- 162
            +  A  +FD M  +  VSWN+M+ G+++NG+       F++ ++    Q++  + T++ 
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMD---EQVEMTNVTVMG 382

Query: 163 -LSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
            L AC  ++L  V   + +H L+       +V+V N+LI+ Y KC       ++F  ++ 
Sbjct: 383 ALHAC--ADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQH 440

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           + +++W A+I G  QN    E +  F KM L  I P+S T +S + A + L  L + + I
Sbjct: 441 KTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWI 500

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG++ +  L  ++ + +AL+DMY+KCG+V  A ++F+  +E    +   ++ G+  +G  
Sbjct: 501 HGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLG 560

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN 397
           + A++LF KM K  I+  PN V+  L V    +  GL ++       +K D+   P +++
Sbjct: 561 KAALELFEKMKKEVIK--PNEVT-FLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDH 617

Query: 398 --GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEM--KL 452
              ++++  +   L ++     +M    ++S + +M+ A   H N    +EL E+   ++
Sbjct: 618 YGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKN----VELGEKAANRI 673

Query: 453 EGVEPTDVTFLSLL 466
             ++P D  +  LL
Sbjct: 674 FDLDPDDGGYHVLL 687


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/611 (34%), Positives = 334/611 (54%), Gaps = 17/611 (2%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N V  + +LS+ A +G   LG  +HA  +K          +   +   + NSL++ Y
Sbjct: 201 VWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK----------FGCCSTVFVCNSLMNMY 250

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +F  M  RD VSWNT+++G + NG        F  S       L Q+++
Sbjct: 251 AKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRS-SITMLTQSTY 309

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR- 218
             ++  C   +   +++ +H  V   G+     V  AL+ +Y K G   +   +F  M  
Sbjct: 310 ATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSG 369

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +NV++WTA+I+G +QN        LF +M    + PN  TY  S +  + + +L    Q
Sbjct: 370 SQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTY--STILTASVASL--PPQ 425

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  + K   +    + +AL+  YSK  + E+A  IF+  ++ D VS + +L  +AQ G 
Sbjct: 426 IHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGD 485

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNN 397
            + A  +F+KM   G++ +   +S+V+      T+ + LG+Q H++ IK        V++
Sbjct: 486 SDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSS 545

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++MY++ G +E +  +F R   R+ VSWNSM++ +A+HG   KAL+++ +M+ EG+E 
Sbjct: 546 ALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEM 605

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             VTFLS++  C+H GLV +G  +  SM   + I+P  EHYAC+VD+  RAG L EA S 
Sbjct: 606 DGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSL 665

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           IE M      +VW+ LLGAC +H + E+GK AAEKL   +P   A Y+L++NIYS +G+W
Sbjct: 666 IEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKW 725

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           KE+ +  K M    V KE G SWI+I+ +VHSF+  DK HP ++ I+  L  +   +  E
Sbjct: 726 KEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQE 785

Query: 638 GYVPNKRFILH 648
           GY P+  F LH
Sbjct: 786 GYCPDTSFALH 796



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 225/456 (49%), Gaps = 9/456 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+  Y+K   + +  K+F+ MP R+ V+W ++++G++++G        F R    G
Sbjct: 141 VGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEG 200

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +  +  +F  +LS      +  + + +H      G    V V N+L+  Y KCG     
Sbjct: 201 VWP-NSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEA 259

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  R++++W  +++GLV N    E L+LF      +      TY + +  C+ +
Sbjct: 260 RVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANI 319

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-AEELDGVSMTVI 329
           + L   RQ+H  + K    S   + +ALMD YSK G + +A  IF   +   + VS T +
Sbjct: 320 KQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAM 379

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G  QNG    A  LF +M + G+  +    S +L      +   L  QIH+ +IK+++
Sbjct: 380 INGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTIL----TASVASLPPQIHAQVIKTNY 435

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                V   L+  YSK  + E+++ +F  +  ++ VSW++M+  +A+ G+   A  ++ +
Sbjct: 436 ECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIK 495

Query: 450 MKLEGVEPTDVTFLSLLHAC-SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           M + G++P + T  S++ AC S    V+ G +F  +++  HR        + +V M  R 
Sbjct: 496 MTMHGLKPNEFTISSVIDACASPTAGVDLGRQF-HAISIKHRCHDALCVSSALVSMYARK 554

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G +  A+   ER   + D++ W ++L   + HG S+
Sbjct: 555 GSIESAQCIFERQTDR-DLVSWNSMLSGYAQHGYSQ 589



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/448 (29%), Positives = 219/448 (48%), Gaps = 28/448 (6%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A + FD++P R+T+  +  +    R G        F         ++   +   +L  C 
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 168 RSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                ++ K +H L   CG++  +V VG +L+  Y K  S   GRKVF  M  RNV+TWT
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS--SVMACSGLQALCEGRQIHGILW 284
           ++++G +Q+    + ++LF +M    + PNS+T+ S  SV+A  G+  L  GR++H    
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDL--GRRVHAQSV 232

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K    S + + ++LM+MY+KCG VE+A  +F   E  D VS   ++ G   NG + EA+Q
Sbjct: 233 KFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQ 292

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF     +   +  +  + V+ +      LGL +Q+HS ++K  F S   V   L++ YS
Sbjct: 293 LFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYS 352

Query: 405 KCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           K G L +++ +F  M+  +N VSW +MI    ++G+   A  L+  M+ +GV P D T+ 
Sbjct: 353 KAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYS 412

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL-------IEARS 516
           ++L A          +  L        I     +Y C   +VG A L         E   
Sbjct: 413 TILTA---------SVASLPPQIHAQVIKT---NYEC-TSIVGTALLASYSKLCNTEEAL 459

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSE 544
            I +M  + DV+ W A+L   +  GDS+
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSD 487


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/588 (33%), Positives = 337/588 (57%), Gaps = 13/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H + +K+    D   VY       + N+L++ Y KC +M +A ++F+ M  RD V
Sbjct: 266 LGMGIHGAVLKSNHFAD---VY-------VANALIAMYAKCGRMEDAGRVFESMLCRDYV 315

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWNT++SG ++N  +     +F R ++    + DQ S   +++A  RS   L  K +H  
Sbjct: 316 SWNTLLSGLVQNELYSDALNYF-RDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAY 374

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G +  + +GN L+  Y KC         F  M  +++I+WT +I+G  QN+ + E 
Sbjct: 375 AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEA 434

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           + LF K+ +  ++ + +   S + ACSGL++    R+IHG ++K  L +D+ +++A++++
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNV 493

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y + G ++ A + FE     D VS T ++     NG   EA++LF  + +  I+ D   +
Sbjct: 494 YGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            + L      +SL  GK+IH  +I+  F     + + L++MY+ CG +E+S K+F  +  
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQ 613

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ + W SMI A   HG G KA+ L+++M  + V P  +TFL+LL+ACSH GL+ +G  F
Sbjct: 614 RDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRF 673

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M   +++ P  EHYAC+VD++ R+  L EA  F+  MP+KP   +W ALLGAC IH 
Sbjct: 674 FEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHS 733

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G+ AA++L  +  ++   Y L++NI++  GRW +  +   RMK  G+ K  G SWI
Sbjct: 734 NKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWI 793

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           E++ ++H+F+  DK HPQ D I+  LA+  +L+  + GY+   +F+ H
Sbjct: 794 EVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFH 841



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/495 (28%), Positives = 241/495 (48%), Gaps = 25/495 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + N+L++ Y KC  +  A  LFD + M   DTVSWN+++S  +  G        F+R  E
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQE 241

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G    +  +F   L   +      +   IH  V    +  +V V NALI  Y KCG   
Sbjct: 242 VGVAS-NTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRME 300

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              +VF  M  R+ ++W  ++SGLVQN+LY + L  F  M      P+ ++ L+ + A  
Sbjct: 301 DAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASG 360

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               L +G+++H    +  L S++ I + L+DMY+KC  V+     FE   E D +S T 
Sbjct: 361 RSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTT 420

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+ G+AQN F  EA+ LF K+   G+++DP M+ +VL       S    ++IH  + K D
Sbjct: 421 IIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD 480

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             ++  + N ++N+Y + G ++ + + F  +  ++ VSW SMI     +G   +ALEL+ 
Sbjct: 481 L-ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFY 539

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVV 502
            +K   ++P  +  +S L A +++  + KG        E+H    R   +      + +V
Sbjct: 540 SLKQTNIQPDSIAIISALSATANLSSLKKG-------KEIHGFLIRKGFFLEGPIASSLV 592

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-- 560
           DM    G +  +R     +  + D+++W +++ A  +HG        A  LF    D   
Sbjct: 593 DMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGN----KAIALFKKMTDQNV 647

Query: 561 -PAPYILMANIYSCS 574
            P     +A +Y+CS
Sbjct: 648 IPDHITFLALLYACS 662



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 228/454 (50%), Gaps = 16/454 (3%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y KC  +R+AVK+FD+M  R   SWN ++  F+ +G++      +K    LG   +
Sbjct: 85  LVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGV-AI 143

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +F  +L AC     S +   IH +   CGY E V V NALI  Y KCG     R +F
Sbjct: 144 DACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLF 203

Query: 215 GE--MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
               M   + ++W ++IS  V      E L LF +M    +  N+ T+++++        
Sbjct: 204 DGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSF 263

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G  IHG + K    +D+ + +AL+ MY+KCG +EDA ++FE     D VS   +L G
Sbjct: 264 VKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSG 323

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             QN    +A+  F  M  +G + D   V  ++   G   +L  GK++H+  I++   SN
Sbjct: 324 LVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSN 383

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N L++MY+KC  ++     F  M  ++ +SW ++IA +A++    +A+ L+ ++++
Sbjct: 384 MQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQV 443

Query: 453 EGVEPTDVTFLSLLHACSHVGLVN-----KGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +G++   +   S+L ACS +   N      G  F + + ++   +        +V++ G 
Sbjct: 444 KGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNA-------IVNVYGE 496

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            G +  AR   E +  K D++ W +++  C  +G
Sbjct: 497 VGHIDYARRAFESIRSK-DIVSWTSMITCCVHNG 529



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 140/293 (47%), Gaps = 20/293 (6%)

Query: 252 LINPNSLTYLSSVMA--CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
           L  P+ L +  S++   C   +AL +G+Q+H +L K  L + L   + L+ MY KCGS+ 
Sbjct: 39  LATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFL--ATKLVLMYGKCGSLR 96

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA ++F+   E    S   ++  F  +G   EA++L+  M   G+ ID     +VL   G
Sbjct: 97  DAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACG 156

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSW 427
                 LG +IH + +K  +    FV N LI MY KCGDL  +  +F    M   ++VSW
Sbjct: 157 ALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSW 216

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           NS+I+A    GN  +AL L+  M+  GV     TF++ L        V  GM        
Sbjct: 217 NSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------G 269

Query: 488 VHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +H    ++ H+A       ++ M  + G + +A    E M  + D + W  LL
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCR-DYVSWNTLL 321



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 16/177 (9%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  G+Q+H+L++KS  ++  F+   L+ MY KCG L D++KVF  M+ R   SWN+++ 
Sbjct: 61  ALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMG 118

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           AF   G   +A+ELY++M++ GV     TF S+L AC  +G    G        E+H ++
Sbjct: 119 AFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG-------AEIHGVA 171

Query: 493 PRAEH----YAC--VVDMVGRAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHGD 542
            +  +    + C  ++ M G+ G L  AR   +  M  K D + W +++ A    G+
Sbjct: 172 VKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGN 228


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/599 (34%), Positives = 329/599 (54%), Gaps = 11/599 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+  ++  LS+SA E     G  LH   +K          Y + +   + N+L+S Y KC
Sbjct: 246 NFATLACFLSVSATESDLFFGVQLHTLAVK----------YGLESEVAVANTLVSMYAKC 295

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +  KLF  MP  D V+WN M+SG ++NG  D     F    + G  + D  +   +
Sbjct: 296 KCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI-RPDSVTLVSL 354

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L A          K +H  +       +V + +AL+  YFKC +    + V+   +  +V
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +  + +ISG V N + +E +K+F  +    I PN++   S + AC+ + A+  G+++H  
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K A +    +ESALMDMY+KCG ++ +  IF      D V+   ++  FAQNG  EEA
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEA 534

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G++     +S+VL       ++  GK+IH ++IK    ++ F  + LI+M
Sbjct: 535 LNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDM 594

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG+LE + +VF  M  +N VSWNS+IA++  +G   +++ L   M+ EG +   VTF
Sbjct: 595 YGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTF 654

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+L+ AC+H G V +G+   + MTE ++I+PR EH+AC+VD+  RAG L +A   I  MP
Sbjct: 655 LALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMP 714

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            KPD  +W ALL AC +H + E+ + A+++LF   P +   Y+LM+NI + +GRW   +K
Sbjct: 715 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSK 774

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
             + MK+  V K  G SW+++    H FV  DK HP ++ I+  L  +L  + +EGY+P
Sbjct: 775 VRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEGYIP 833



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 219/461 (47%), Gaps = 8/461 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT---VSWNTMVSGFLRNGEFDMGFGFFKR 145
           T +   L+  Y+   + R+AV +F  +P       + WN ++ G    G++     F+ +
Sbjct: 75  TALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLK 134

Query: 146 SLELGFYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                   L D  +F  ++ +C       + +++H      G + ++ VG+ALI  Y   
Sbjct: 135 MWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANG 194

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R+VF  M  R+ + W  ++ G V+       ++LF  M      PN  T L+  
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT-LACF 253

Query: 265 MACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           ++ S  ++ L  G Q+H +  K  L+S++ + + L+ MY+KC  ++D W++F      D 
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+   ++ G  QNGF ++A+ LF  M K+GI  D   + ++L           GK++H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           I+++    + F+ + L+++Y KC  +  +  V+      + V  ++MI+ +  +G   +A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           ++++  +  +G+ P  V   S+L AC+ +  +  G E L S    +    R    + ++D
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE-LHSYALKNAYEGRCYVESALMD 492

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G L  +     ++  K D + W +++ + + +G+ E
Sbjct: 493 MYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEPE 532


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 319/585 (54%), Gaps = 26/585 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T   N+L++ Y K  ++ ++  LF+    RD VSWNTM+S F ++  F     FF R + 
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF-RLMV 289

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS 207
           L   +LD  +   +L AC   E   V K IH  V       E   VG+AL+  Y  C   
Sbjct: 290 LEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMA 266
            SGR+VF  +  R +  W A+ISG  +N L E+ L LF++M  +  + PN+ T  S + A
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 409

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C   +A      IHG   KL  + D  +++ALMDMYS+ G ++ +  IF+  E  D VS 
Sbjct: 410 CVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSW 469

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVK---------------AGIEIDPNMVS--AVLGVFG 369
             ++ G+  +G    A+ L  +M +                G    PN ++   VL    
Sbjct: 470 NTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCA 529

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
              ++  GK+IH+  I++   S+  V + L++MY+KCG L  S +VF+ M  +N ++WN 
Sbjct: 530 ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNV 589

Query: 430 MIAAFARHGNGFKALELYEEMKLEG-----VEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           +I A   HG G +ALEL++ M  E       +P +VTF+++  ACSH GL+++G+     
Sbjct: 590 LIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYR 649

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD-VLVWQALLGACSIHGDS 543
           M   H + P ++HYACVVD++GRAG L EA   +  MP + D V  W +LLGAC IH + 
Sbjct: 650 MKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNV 709

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E+G+ AA+ L   +P+  + Y+L++NIYS +G W +  +  K M++MGV KE G SWIE 
Sbjct: 710 ELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEF 769

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             +VH F+  D  HPQ++ +HG L  L   M  EGYVP+   +LH
Sbjct: 770 RDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLH 814



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 255/527 (48%), Gaps = 40/527 (7%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DN+   + L ++S  +     G  +HA+ +K          Y   + TV  N+L++ Y K
Sbjct: 91  DNFAFPAVLKAVSGLQD-LKTGEQIHAAAVKFG--------YGSSSVTVA-NTLVNMYGK 140

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +  K+FD +  RD VSWN+ ++   R  +++     F R++++   +L  +SFT+
Sbjct: 141 CGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAF-RAMQMENMEL--SSFTL 197

Query: 162 ILSACDRSELSL-----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +  A   S L +     + K +H      G ++  T  NAL+  Y K G     + +F  
Sbjct: 198 VSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFT-NNALMAMYAKLGRVDDSKALFES 256

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R++++W  +IS   Q+  + E L  F  M L  +  + +T  S + ACS L+ L  G
Sbjct: 257 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 316

Query: 277 RQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           ++IH  +L    L  +  + SAL+DMY  C  VE   ++F+            ++ G+A+
Sbjct: 317 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 376

Query: 336 NGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           NG +E+A+ LF++M+K AG+  +   +++V+       +    + IH   +K  F  + +
Sbjct: 377 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY 436

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLE 453
           V N L++MYS+ G ++ S  +F  M  R+ VSWN+MI  +   G    AL L  EM ++E
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRME 496

Query: 454 GV----------------EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                             +P  +T +++L  C+ +  + KG E + +    + ++     
Sbjct: 497 NTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKE-IHAYAIRNMLASDITV 555

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + +VDM  + G L  +R     MP K +V+ W  L+ AC +HG  E
Sbjct: 556 GSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGE 601



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 211/438 (48%), Gaps = 22/438 (5%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P R T SW   +    R+ +F      +   + +   + D  +F  +L A    +     
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIE-MTVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 176 KMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           + IH      GY    VTV N L+  Y KCG      KVF  +  R+ ++W + I+ L +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL---QALCEGRQIHGILWKLALQSD 291
            + +E+ L+ F  M +  +  +S T +S  +ACS L     L  G+Q+HG   ++  Q  
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKT 231

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
               +ALM MY+K G V+D+  +FE   + D VS   ++  F+Q+    EA+  F  MV 
Sbjct: 232 F-TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLINMYSKCGDLE 410
            G+E+D   +++VL        L +GK+IH+ +++ +D   N FV + L++MY  C  +E
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHAC 469
              +VF  +  R    WN+MI+ +AR+G   KAL L+ EM K+ G+ P   T  S++ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 470 SHVGLVNKGMEFLKSMTEVH----RISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPV 523
            H        E   +   +H    ++  + + Y    ++DM  R G +  + +  + M V
Sbjct: 411 VHC-------EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEV 463

Query: 524 KPDVLVWQALLGACSIHG 541
           + D + W  ++    + G
Sbjct: 464 R-DRVSWNTMITGYVLSG 480



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 222/473 (46%), Gaps = 43/473 (9%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V I+ +L   +      +G  +HA  ++  +  +N         + + ++L+  Y  C Q
Sbjct: 298 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN---------SFVGSALVDMYCNCRQ 348

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +  ++FD +  R    WN M+SG+ RNG  +     F   +++     +  +   ++ 
Sbjct: 349 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 408

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC   E     + IH      G++E+  V NAL+  Y + G       +F  M VR+ ++
Sbjct: 409 ACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVS 468

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHL-----------------GLINPNSLTYLSSVMAC 267
           W  +I+G V +  Y   L L  +M                   G   PN++T ++ +  C
Sbjct: 469 WNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGC 528

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L A+ +G++IH    +  L SD+ + SAL+DMY+KCG +  + ++F      + ++  
Sbjct: 529 AALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 588

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKA---GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           V+++    +G  EEA++LF  MV     G E  PN V+  + VF   +  GL  +  +L 
Sbjct: 589 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVT-FITVFAACSHSGLISEGLNLF 647

Query: 385 --IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSV-SWNSMIAAFARHG 438
             +K D    P  ++   ++++  + G LE++ ++ + M A  + V +W+S++ A   H 
Sbjct: 648 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 707

Query: 439 NGFKALELYE--EMKLEGVEPTDVTFLSLL-HACSHVGLVNKGMEFLKSMTEV 488
           N    +EL E     L  +EP   +   LL +  S  GL NK ME  K+M ++
Sbjct: 708 N----VELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQM 756


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/606 (33%), Positives = 324/606 (53%), Gaps = 20/606 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ +L  SA     H G  LH + +K              + T++ N+L+  Y KC ++R
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLK----------LGFGSDTMLGNNLIDMYAKCGELR 56

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F  MP R+ VSW  ++ GFLR+G+             L     ++ + +  L AC
Sbjct: 57  MAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKAC 116

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                      IH      G+E    V N+L+  Y K G     R+VF     RN++TW 
Sbjct: 117 GVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWN 176

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLI-----NPNSLTYLSSVMACSGLQALCEGRQIHG 281
           A+ISG        + L +F +M           P+  T+ S + AC  L A  EG Q+H 
Sbjct: 177 AMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHA 236

Query: 282 --ILWKLALQSDLCIESALMDMYSKCGSVED-AWQIFEFAEELDGVSMTVILVGFAQNGF 338
             ++  ++  S+  +  AL+DMY KC  +   A Q+F   E+ + +  T ++VG AQ G 
Sbjct: 237 AMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQ 296

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            +EAM+LF +   +G+  D +++S+V+GVF     +  G+Q+H   +K+    +  V N 
Sbjct: 297 VKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANS 356

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MY KCG  +++ + F  +  RN VSW +MI    +HG+G +A+ ++EEM+ EGVEP 
Sbjct: 357 LIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPD 416

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
           +V +L+LL ACSH GLV +   +  ++    R+ PRAEHYAC+VD++GRAG L EA+  +
Sbjct: 417 EVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLV 476

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
             MP+ P V VWQ LL AC +H +  +G+ A E L     D+P  Y++++NI++ +G W+
Sbjct: 477 ATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWR 536

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADTIHGVLAELLRLMIDE 637
           E  +    M+  G+ K+ G SW+E+ K+ H F    D  HP+A  I  VL ++ R M + 
Sbjct: 537 ECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRER 596

Query: 638 -GYVPN 642
            GY P 
Sbjct: 597 LGYSPG 602



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +++  G Q+H  ++K  F S+  + N LI+MY+KCG+L  + +VF  
Sbjct: 5   KMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGG 64

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVGLVNK 477
           M  RN VSW +++  F RHG+  + L L   M+ L  V P + T  + L AC  VG +  
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAA 124

Query: 478 GM 479
           G+
Sbjct: 125 GV 126


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 330/567 (58%), Gaps = 15/567 (2%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            I N+L++ Y KC  + NA  +F  MP +DTVSWN+M+SG   N  F+     F      G
Sbjct: 493  IGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNG 552

Query: 151  FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               +  ++F++I  LS+C       + + IH   +  G + +V+V NAL+T Y +  S +
Sbjct: 553  ---MVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSIN 609

Query: 209  SGRKVFGEMRVRNVITWTAVISGLVQNQLYE----EGLKLFVKMHLGLINPNSLTYLSSV 264
              +KVF +M   + ++W + I  L +   YE    + LK F++M      PN +T+++ +
Sbjct: 610  ECQKVFFQMPEYDQVSWNSFIGALAK---YEASVLQALKYFLEMMQAGWRPNRVTFINIL 666

Query: 265  MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDG 323
             A S    L  G QIH ++ K ++  D  IE+AL+  Y KC  +ED   IF   +E  D 
Sbjct: 667  AAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDE 726

Query: 324  VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
            VS   ++ G+  +G   +AM L   M++ G ++D    + VL       +L  G ++H+ 
Sbjct: 727  VSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHAC 786

Query: 384  IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
             +++   S+  V + L++MY+KCG ++ + + F  M  RN  SWNSMI+ +ARHG+G KA
Sbjct: 787  AVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKA 846

Query: 444  LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
            L+++  MK  G  P  VTF+ +L ACSHVGLV++G +  KSM EV+ +SPR EH++C+VD
Sbjct: 847  LKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVD 906

Query: 504  MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSP 561
            ++GRAG + +   FI+ MP+ P++L+W+ +LGAC      ++E+G+ AA+ L   +P + 
Sbjct: 907  LLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNA 966

Query: 562  APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
              Y+L++N+++  G W++  +A   M++  V K+ G SW+ ++  VH FV  D+ HP+ +
Sbjct: 967  VNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKE 1026

Query: 622  TIHGVLAELLRLMIDEGYVPNKRFILH 648
             I+  L EL+  + D GYVP  ++ L+
Sbjct: 1027 KIYEKLKELMNKIRDAGYVPETKYALY 1053



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 149/520 (28%), Positives = 258/520 (49%), Gaps = 40/520 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++L++ + +   M  A  +F  M  R+ V+ N ++ G  R  + +     FK   +L   
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL--V 447

Query: 153 QLDQASFTIILSA----CDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSS 207
           +++  S  ++LS      +  E     + +H  ++  G  +  +++GNAL+  Y KC + 
Sbjct: 448 EINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAI 507

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            +   VF  M  ++ ++W ++ISGL  N+ +EE +  F  M    + P++ + +S++ +C
Sbjct: 508 DNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSC 567

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L  L  GRQIHG  +K  L  D+ + +AL+ +Y++  S+ +  ++F    E D VS  
Sbjct: 568 SSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWN 627

Query: 328 VILVGFAQNGFEE---EAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHS 382
             +   A+  +E    +A++ F++M++AG    PN V+   +L      + LGLG QIH+
Sbjct: 628 SFIGALAK--YEASVLQALKYFLEMMQAGWR--PNRVTFINILAAVSSFSVLGLGHQIHA 683

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGF 441
           LI+K     +  + N L+  Y KC  +ED   +FSRM+  R+ VSWNSMI+ +   G   
Sbjct: 684 LILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILH 743

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           KA++L   M   G +    TF ++L AC+ V  + +GM       EVH  + RA   + V
Sbjct: 744 KAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGM-------EVHACAVRACLESDV 796

Query: 502 ------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                 VDM  + G +  A  F E MPV+ ++  W +++   + HG  +     A K+F 
Sbjct: 797 VVGSALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGHGQ----KALKIFT 851

Query: 556 ---AQPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEM 590
                  SP     +  + +CS  G   E  K  K M E+
Sbjct: 852 RMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEV 891



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/402 (27%), Positives = 204/402 (50%), Gaps = 16/402 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y++   + +A KLFD+MP ++ VSW+ ++SG+ +N   D     FK  +  G  
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLL 238

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE--EEVTVGNALITSYFKC-GSSSS 209
             +  +    L AC +   + +   +    ++C      ++ + N L++ Y  C GS   
Sbjct: 239 P-NHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDD 297

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GL---INPNSLTYLSSVM 265
             +VF E++ RN +TW ++IS   +        KLF  M + G+   + PN  T  S V 
Sbjct: 298 AHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVT 357

Query: 266 ACSGLQ--ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           A   L    L    Q+   + K     DL + SAL++ +++ G ++ A  IF+   + + 
Sbjct: 358 AACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNA 417

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK----Q 379
           V+M  ++VG A+    EEA ++F +M K  +EI+   +  +L  F   ++L  GK    +
Sbjct: 418 VTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQE 476

Query: 380 IHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           +H+ + +S        + N L+NMY KC  ++++  VF  M  +++VSWNSMI+    + 
Sbjct: 477 VHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNE 536

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
              +A+  +  MK  G+ P++ + +S L +CS +G +  G +
Sbjct: 537 RFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQ 578



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 132/489 (26%), Positives = 235/489 (48%), Gaps = 52/489 (10%)

Query: 85  VPNAT--VIWNS-------LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           +P AT  +IW+        ++++ L  D++   + L     +RD    NT V+G     +
Sbjct: 54  IPIATDDLIWHKQVSLKVPIVAWRLLKDRLPTKINLQRRGSLRDAT--NTCVAGC----D 107

Query: 136 F-DMGFGFFKRSLE--------LGFYQLDQASFTIILSACDRSELS---LVSKMIHCLVY 183
           F +M    F R L         L  Y    +    + S  DR + S     +  +H  +Y
Sbjct: 108 FPEMASHLFMRLLNKYNSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLY 167

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G+ ++V   N LI  Y + G+  S RK+F EM  +N+++W+ +ISG  QN++ +E   
Sbjct: 168 KTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACS 227

Query: 244 LFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           LF  +    + PN     S++ AC   G   +  G QIH  + KL   SD+ + + LM M
Sbjct: 228 LFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 287

Query: 302 YSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID--P 358
           YS C GS++DA ++F+  +  + V+   I+  + + G    A +LF  M   G+E++  P
Sbjct: 288 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRP 347

Query: 359 N------MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           N      +V+A   +   D  L L +Q+ + I KS F  + +V + L+N +++ G ++ +
Sbjct: 348 NEYTLCSLVTAACSL--ADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCA 405

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +F +M  RN+V+ N ++   AR   G +A ++++EMK + VE    + + LL   +  
Sbjct: 406 KMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK-DLVEINSESLVVLLSTFTEF 464

Query: 473 GLVNKGMEFLKSMTEVHR-------ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
             + +G    +   EVH        +  R      +V+M G+   +  A S  + MP K 
Sbjct: 465 SNLKEGK---RKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSK- 520

Query: 526 DVLVWQALL 534
           D + W +++
Sbjct: 521 DTVSWNSMI 529



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 160/309 (51%), Gaps = 14/309 (4%)

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           +L +   +H  L+K     D+   + L+++Y + G++  A ++F+   + + VS + ++ 
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV--DTSLGLGKQIHSLIIKSDF 389
           G+ QN   +EA  LF  ++ +G+  +   V + L        T + LG QIH+ I K   
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 390 TSNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            S+  ++N L++MYS C G ++D+ +VF  +  RNSV+WNS+I+ + R G+   A +L+ 
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 449 EMKLEGVE----PTDVTFLSLL-HACSHVGLVNKGMEFLKSM-TEVHRISPRAEHY--AC 500
            M++EGVE    P + T  SL+  ACS   L + G+  L+ M T + +     + Y  + 
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSA 391

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +V+   R GL+  A+   ++M  +  V +   ++G    H   E  K   E   L + +S
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINS 451

Query: 561 PAPYILMAN 569
            +  +L++ 
Sbjct: 452 ESLVVLLST 460



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 27/313 (8%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDT 120
           LG  +HA  +K          Y+V +   I N+LL+FY KC+QM +   +F  M   RD 
Sbjct: 677 LGHQIHALILK----------YSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDE 726

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH- 179
           VSWN+M+SG+L +G            ++ G  +LD  +F  +LSAC           +H 
Sbjct: 727 VSWNSMISGYLHSGILHKAMDLVWPMMQRG-QKLDGFTFATVLSACASVATLERGMEVHA 785

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           C V  C  E +V VG+AL+  Y KCG      + F  M VRN+ +W ++ISG  ++   +
Sbjct: 786 CAVRAC-LESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQ 844

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWKLALQSDLCIESAL 298
           + LK+F +M     +P+ +T++  + ACS +  + EG +    +     L   +   S +
Sbjct: 845 KALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCM 904

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDG-----VSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           +D+  + G V+   +I +F + +       +  TV+      NG   E  Q   KM+   
Sbjct: 905 VDLLGRAGDVK---KIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKML--- 958

Query: 354 IEIDP-NMVSAVL 365
           IE++P N V+ VL
Sbjct: 959 IELEPQNAVNYVL 971



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 39/245 (15%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           LD +   + +LS  A       G  +HA  ++     D           V+ ++L+  Y 
Sbjct: 759 LDGFT-FATVLSACASVATLERGMEVHACAVRACLESD----------VVVGSALVDMYA 807

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC ++  A + F+ MP+R+  SWN+M+SG+ R+G        F R  + G    D  +F 
Sbjct: 808 KCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHG-QSPDHVTFV 866

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS----YFKC-----GSSSSGR 211
            +LSAC  S + LV +         GY+   ++G     S    +F C     G +   +
Sbjct: 867 GVLSAC--SHVGLVDE---------GYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVK 915

Query: 212 KVFGEMRVR----NVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTY--LSSV 264
           K+   ++      N++ W  V+    + N    E  +   KM + L   N++ Y  LS++
Sbjct: 916 KIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNM 975

Query: 265 MACSG 269
            A  G
Sbjct: 976 HAAGG 980


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 340/599 (56%), Gaps = 17/599 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFY 99
           +D Y   SRLL   A    F LG  +H   IK  +E     NVY       + +SL+  Y
Sbjct: 99  VDGY-SFSRLLKGIASVKRFDLGEQVHGLVIKGGYEC----NVY-------VGSSLVDMY 146

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC+++ +A + F ++   ++VSWN +++GF++  +    F             +D  +F
Sbjct: 147 AKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTF 206

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMR 218
             +L+  D      + K +H  V   G + E+T+ NA+I+SY  CGS S  ++VF G   
Sbjct: 207 APLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGG 266

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++I+W ++I+G  +++L E   +LF++M    +  +  TY   + ACSG +    G+ 
Sbjct: 267 SKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKS 326

Query: 279 IHGILWKLALQSDLCIESALMDMYSK--CGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +HG++ K  L+      +AL+ MY +   G++EDA  +FE  +  D +S   I+ GFAQ 
Sbjct: 327 LHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQK 386

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E+A++ F  +  + I++D    SA+L       +L LG+QIH+L  KS F SN FV 
Sbjct: 387 GLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVI 446

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           + LI MYSKCG +E + K F +++ ++S V+WN+MI  +A+HG G  +L+L+ +M  + V
Sbjct: 447 SSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNV 506

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +   VTF ++L ACSH GL+ +G+E L  M  V++I PR EHYA  VD++GRAGL+ +A+
Sbjct: 507 KLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAK 566

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             IE MP+ PD +V +  LG C   G+ EM    A  L   +P+    Y+ ++++YS   
Sbjct: 567 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLK 626

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           +W+E+A   K MKE GV K  G SWIEI  QV +F  +D+ +P    I+ ++ +L + M
Sbjct: 627 KWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEM 685



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 230/463 (49%), Gaps = 26/463 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF---KRSLEL 149
           N +L  Y+K   +  A  LFD+MP RD+VSWNTM+SG+   G+ +  +  F   KRS   
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGS- 97

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
               +D  SF+ +L      +   + + +H LV   GYE  V VG++L+  Y KC     
Sbjct: 98  ---DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVED 154

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEG--------LKLFVKMHLGLINPNSLTYL 261
             + F E+   N ++W A+I+G VQ +  +          +K  V M  G   P  LT L
Sbjct: 155 AFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAP-LLTLL 213

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEE 320
              M C+ L      +Q+H  + KL LQ ++ I +A++  Y+ CGSV DA ++F+     
Sbjct: 214 DDPMFCNLL------KQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGS 267

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D +S   ++ GF+++  +E A +LF++M +  +E D    + +L     +     GK +
Sbjct: 268 KDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSL 327

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSK--CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           H ++IK          N LI+MY +   G +ED++ +F  +  ++ +SWNS+I  FA+ G
Sbjct: 328 HGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKG 387

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
               A++ +  ++   ++  D  F +LL +CS +  +  G +     T+   +S      
Sbjct: 388 LSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVIS 447

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + +V M  + G++  AR   +++  K   + W A++   + HG
Sbjct: 448 SLIV-MYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHG 489



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 14/258 (5%)

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           SD+ + + ++D Y K G +  A  +F+   + D VS   ++ G+   G  E+A  LF  M
Sbjct: 33  SDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCM 92

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            ++G ++D    S +L          LG+Q+H L+IK  +  N +V + L++MY+KC  +
Sbjct: 93  KRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERV 152

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHA 468
           ED+ + F  ++  NSVSWN++IA F +  +   A  L   M+++     D  TF  LL  
Sbjct: 153 EDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLL-- 210

Query: 469 CSHVGLVNKGMEFLKSMTEVH----RISPRAEHYAC--VVDMVGRAGLLIEARSFIERMP 522
                L++  M F   + +VH    ++  + E   C  ++      G + +A+   + + 
Sbjct: 211 ----TLLDDPM-FCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLG 265

Query: 523 VKPDVLVWQALLGACSIH 540
              D++ W +++   S H
Sbjct: 266 GSKDLISWNSMIAGFSKH 283


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 312/558 (55%), Gaps = 5/558 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y+K  ++  A  +F+ MP  D VSWN ++SG + NG            L++ + 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL---LQMKYS 297

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            L    FT+  IL AC  +    + + IH  +     + +  +G  L+  Y K       
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RKVF  M  R++I   A+ISG      ++E L LF ++    +  N  T  + + + + L
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +A    RQ+H +  K+    D  + + L+D Y KC  + DA ++FE     D ++ T ++
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              +Q    E A++LF++M++ G+E DP ++S++L      ++   GKQ+H+ +IK  F 
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ F  N L+  Y+KCG +ED+   FS +  R  VSW++MI   A+HG+G +ALEL+  M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             EG+ P  +T  S+L AC+H GLV++   +  SM E+  I    EHY+C++D++GRAG 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   +  MP + +  +W ALLGA  +H D E+GK AAEKLF+ +P+    ++L+AN 
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G W E AK  K MK+  + KE  +SWIE++ +VH+F+V DK HP    I+  L EL
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVEL 777

Query: 631 LRLMIDEGYVPNKRFILH 648
             LM   G+VPN    LH
Sbjct: 778 GDLMSKAGFVPNVDVDLH 795



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 167/645 (25%), Positives = 282/645 (43%), Gaps = 95/645 (14%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           IS+ L+  A       G  LHAS +K+             +     N L+SFY KC +  
Sbjct: 7   ISQQLTRYAAAQALLPGAHLHASLLKS------------GSLASFRNHLISFYSKCRRPC 54

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-------DQASF 159
            A + FD++P    VSW+++V+ +  NG          RS    F+ +       ++ + 
Sbjct: 55  CARRFFDEIPDPCHVSWSSLVTAYSNNG--------LPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
            ++L     + L      +H +    G+  +V V NAL+  Y   G     R+VF E   
Sbjct: 107 PVVLKCVPDARLG---AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADS 163

Query: 220 -RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RN ++W  ++S  V+N    + +++F +M    I P    +   V AC+G + +  GRQ
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H ++ ++    D+   +AL+DMY K G V+ A  IFE   + D VS   ++ G   NG 
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +  A++L ++M  +G+  +   +S++L       +  LG+QIH  +IK++  S+ ++  G
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY+K   L+D+ KVF  M  R+ +  N++I+  +  G   +AL L+ E++ EG+   
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 459 DVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRISPRAEHY---ACVVDM 504
             T  ++L + +           H   V  G  F     + H ++   + Y   +C+ D 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF-----DAHVVNGLIDSYWKCSCLSDA 458

Query: 505 -----VGRAGLLIEARSFIE-------------------RMPVKPDVLVWQALLGACSIH 540
                   +G +I   S I                    R  ++PD  V  +LL AC+  
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 541 GDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
              E GK     L   Q   D+ A   L+     C G  ++   A   + E GV     +
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-GSIEDAELAFSSLPERGV-----V 572

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLA-ELLRLMIDEGYVPN 642
           SW  +            +   A   HG  A EL   M+DEG  PN
Sbjct: 573 SWSAM------------IGGLAQHGHGKRALELFGRMVDEGINPN 605


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 298/504 (59%), Gaps = 7/504 (1%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           LE  +   D+  +  +L  C   +L +  +++H  +    +  ++ +GN L+  Y KCGS
Sbjct: 51  LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RKVF +M  R+ +TWT +ISG  Q+    + L  F +M     +PN  T  S + A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            +  +  C G Q+HG   K    S++ + SAL+D+Y++ G ++DA  +F+  E  + VS 
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSL 383
             ++ G A+    E+A++LF  M++ G    P+  S    +FG  +S G    GK +H+ 
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFR--PSHFSYA-SLFGACSSTGFLEQGKWVHAY 287

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IKS      F  N L++MY+K G + D+ K+F R+A R+ VSWNS++ A+A+HG G +A
Sbjct: 288 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEA 347

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           +  +EEM+  G+ P +++FLS+L ACSH GL+++G  + + M +   I P A HY  VVD
Sbjct: 348 VWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVD 406

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L  A  FIE MP++P   +W+ALL AC +H ++E+G YAAE +F   PD P P
Sbjct: 407 LLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP 466

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           ++++ NIY+  GRW + A+  K+MKE GV KE   SW+EIE  +H FV +D+ HPQ + I
Sbjct: 467 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526

Query: 624 HGVLAELLRLMIDEGYVPNKRFIL 647
                E+L  + + GYVP+   ++
Sbjct: 527 ARKWEEVLAKIKELGYVPDTSHVI 550



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 191/405 (47%), Gaps = 15/405 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL+ Y KC  +  A K+F+ MP RD V+W T++SG+ ++        FF + L  
Sbjct: 96  VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF 155

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G Y  ++ + + ++ A            +H     CG++  V VG+AL+  Y + G    
Sbjct: 156 G-YSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + VF  +  RN ++W A+I+G  +    E+ L+LF  M      P+  +Y S   ACS 
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSS 274

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L +G+ +H  + K   +      + L+DMY+K GS+ DA +IF+   + D VS   +
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           L  +AQ+GF +EA+  F +M + GI   PN +S  +VL        L  G   + L+ K 
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIR--PNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN----GFK 442
                 +    ++++  + GDL  +++    M    + + W +++ A   H N     + 
Sbjct: 393 GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 452

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           A  ++E   L+  +P     L  ++A    G  N      K M E
Sbjct: 453 AEHVFE---LDPDDPGPHVILYNIYASG--GRWNDAARVRKKMKE 492


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 298/504 (59%), Gaps = 7/504 (1%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           LE  +   D+  +  +L  C   +L +  +++H  +    +  ++ +GN L+  Y KCGS
Sbjct: 51  LEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGS 110

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RKVF +M  R+ +TWT +ISG  Q+    + L  F +M     +PN  T  S + A
Sbjct: 111 LEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKA 170

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            +  +  C G Q+HG   K    S++ + SAL+D+Y++ G ++DA  +F+  E  + VS 
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSL 383
             ++ G A+    E+A++LF  M++ G    P+  S    +FG  +S G    GK +H+ 
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFR--PSHFSYA-SLFGACSSTGFLEQGKWVHAY 287

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IKS      F  N L++MY+K G + D+ K+F R+A R+ VSWNS++ A+A+HG G +A
Sbjct: 288 MIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEA 347

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           +  +EEM+  G+ P +++FLS+L ACSH GL+++G  + + M +   I P A HY  VVD
Sbjct: 348 VWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVD 406

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L  A  FIE MP++P   +W+ALL AC +H ++E+G YAAE +F   PD P P
Sbjct: 407 LLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP 466

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           ++++ NIY+  GRW + A+  K+MKE GV KE   SW+EIE  +H FV +D+ HPQ + I
Sbjct: 467 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526

Query: 624 HGVLAELLRLMIDEGYVPNKRFIL 647
                E+L  + + GYVP+   ++
Sbjct: 527 ARKWEEVLAKIKELGYVPDTSHVI 550



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 191/405 (47%), Gaps = 15/405 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL+ Y KC  +  A K+F+ MP RD V+W T++SG+ ++        FF + L  
Sbjct: 96  VMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRF 155

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G Y  ++ + + ++ A            +H     CG++  V VG+AL+  Y + G    
Sbjct: 156 G-YSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 214

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + VF  +  RN ++W A+I+G  +    E+ L+LF  M      P+  +Y S   ACS 
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSS 274

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L +G+ +H  + K   +      + L+DMY+K GS+ DA +IF+   + D VS   +
Sbjct: 275 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 334

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           L  +AQ+GF +EA+  F +M + GI   PN +S  +VL        L  G   + L+ K 
Sbjct: 335 LTAYAQHGFGKEAVWWFEEMRRVGIR--PNEISFLSVLTACSHSGLLDEGWHYYELMKKD 392

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN----GFK 442
                 +    ++++  + GDL  +++    M    + + W +++ A   H N     + 
Sbjct: 393 GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 452

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           A  ++E   L+  +P     L  ++A    G  N      K M E
Sbjct: 453 AEHVFE---LDPDDPGPHVILYNIYASG--GRWNDAARVRKKMKE 492


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 314/564 (55%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +     + NSL+  Y KC  +  A  LFD    ++ VSWNT++ G+ + G+F   F   +
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                   ++++ +   +L AC      L  K IH   +  G+ ++  V NA + +Y KC
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKC 449

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            S     +VF  M  + V +W A+I    QN    + L LF+ M    ++P+  T  S +
Sbjct: 450 SSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLL 509

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           +AC+ L+ L  G++IHG + +  L+ D  I  +LM +Y +C S+     IF+  E    V
Sbjct: 510 LACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLV 569

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              V++ GF+QN    EA+  F +M+  GI+     V+ VLG     ++L LGK++HS  
Sbjct: 570 CWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFA 629

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K+  + + FV   LI+MY+KCG +E S  +F R+  ++   WN +IA +  HG+G KA+
Sbjct: 630 LKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAI 689

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           EL+E M+ +G  P   TFL +L AC+H GLV +G+++L  M  ++ + P+ EHYACVVDM
Sbjct: 690 ELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDM 749

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG L EA   +  MP +PD  +W +LL +C  +GD E+G+  ++KL   +P+    Y
Sbjct: 750 LGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENY 809

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++N+Y+  G+W E  K  +RMKE G+ K+ G SWIEI   V+ F+V D    ++  I 
Sbjct: 810 VLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQ 869

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
               +L + +   GY P+   +LH
Sbjct: 870 QTWIKLEKKISKIGYKPDTSCVLH 893



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 267/564 (47%), Gaps = 25/564 (4%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           S + L  DN+  +  +    A      LG ++HA  +K     D            + N+
Sbjct: 187 SATDLAPDNFT-LPCVAKACAGVADVELGEAVHALALKAGGFSD----------AFVGNA 235

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL---ELGF 151
           L++ Y KC  + +AVK+F+ M  R+ VSWN+++     NG F    G FKR L   E G 
Sbjct: 236 LIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGL 295

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D A+   ++ AC       +  ++H L +  G  EEVTV N+L+  Y KCG     R
Sbjct: 296 VP-DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEAR 354

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGL 270
            +F     +NV++W  +I G  +   +    +L  +M     +  N +T L+ + ACSG 
Sbjct: 355 ALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGE 414

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L   ++IHG  ++     D  + +A +  Y+KC S++ A ++F   E     S   ++
Sbjct: 415 HQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALI 474

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              AQNGF  +++ LF+ M+ +G++ D   + ++L        L  GK+IH  ++++   
Sbjct: 475 GAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLE 534

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+   L+++Y +C  +     +F +M  ++ V WN MI  F+++    +AL+ + +M
Sbjct: 535 LDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQM 594

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              G++P ++    +L ACS V  +  G E      + H +S  A     ++DM  + G 
Sbjct: 595 LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH-LSEDAFVTCALIDMYAKCGC 653

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMA 568
           + ++++  +R+  K D  VW  ++    IHG    G  A E   L Q     P  +  + 
Sbjct: 654 MEQSQNIFDRVNEK-DEAVWNVIIAGYGIHGH---GLKAIELFELMQNKGGRPDSFTFLG 709

Query: 569 NIYSC--SGRWKERAKAIKRMKEM 590
            + +C  +G   E  K + +M+ +
Sbjct: 710 VLIACNHAGLVTEGLKYLGQMQNL 733



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 25/465 (5%)

Query: 30  QDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT 89
           Q+ T S+S +  +    I  LL       + H+G  +HA    +         + + N  
Sbjct: 81  QNGTVSSSDISKE---AIGILLRACGHHKNIHVGRKVHALVSAS---------HKLRNDV 128

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   +++ Y  C    ++  +FD    +D   +N ++SG+ RN  F      F   L  
Sbjct: 129 VLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSA 188

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  +   +  AC       + + +H L    G   +  VGNALI  Y KCG   S
Sbjct: 189 TDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVES 248

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL----GLINPNSLTYLSSVM 265
             KVF  MR RN+++W +V+    +N  + E   +F ++ +    GL+ P+  T ++ + 
Sbjct: 249 AVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLV-PDVATMVTVIP 307

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ +  +  G  +HG+ +KL +  ++ + ++L+DMYSKCG + +A  +F+     + VS
Sbjct: 308 ACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVS 367

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              I+ G+++ G      +L  +M +   + ++   V  VL     +  L   K+IH   
Sbjct: 368 WNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYA 427

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            +  F  +  V N  +  Y+KC  L+ + +VF  M  +   SWN++I A A++G   K+L
Sbjct: 428 FRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSL 487

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           +L+  M   G++P   T  SLL AC+        ++FL+   E+H
Sbjct: 488 DLFLVMMDSGMDPDRFTIGSLLLACAR-------LKFLRCGKEIH 525



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 234/496 (47%), Gaps = 47/496 (9%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLC-GYEEEVTVGNALITSYFKCGSSSSGRK 212
           + + +  I+L AC   +   V + +H LV        +V +   +I  Y  CGS S  R 
Sbjct: 90  ISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRG 149

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQ 271
           VF   + +++  + A++SG  +N L+ + + LF+++     + P++ T      AC+G+ 
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVA 209

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +  G  +H +  K    SD  + +AL+ MY KCG VE A ++FE     + VS   ++ 
Sbjct: 210 DVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 332 GFAQNGFEEEAMQLFVKMV---KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
             ++NG   E   +F +++   + G+  D   +  V+        + +G  +H L  K  
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLG 329

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            T    VNN L++MYSKCG L ++  +F     +N VSWN++I  +++ G+     EL +
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 449 EM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           EM + E V   +VT L++L ACS       G   L S+ E+H  + R  H     ++V  
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACS-------GEHQLLSLKEIHGYAFR--HGFLKDELVAN 440

Query: 508 AGLLIEAR----SFIERMPVKPD---VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           A +   A+       ER+    +   V  W AL+GA + +G    GK  +  LFL   DS
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFP--GK--SLDLFLVMMDS 496

Query: 561 ---PAPYILMANIYSCSGRWKERAKAIKRMKE---------MGVDKETGISWIEIEKQVH 608
              P  + + + + +C+     R K ++  KE         + +D+  GIS + +  Q  
Sbjct: 497 GMDPDRFTIGSLLLACA-----RLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCS 551

Query: 609 SFVVD----DKMHPQA 620
           S ++     DKM  ++
Sbjct: 552 SMLLGKLIFDKMENKS 567


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 315/556 (56%), Gaps = 3/556 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +LS Y +   +    K FD+MP+ D VSWN +++ ++ N +FD  + FF+  L  G    
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGI-NP 59

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
            +   +I LSAC  +    + + I   +   G EEE  V  AL++ Y K G  +    VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  R+V+ W+A+++   +N    E L LF +M L  + PN +T +S + AC+ L  L 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G  +H  +    +QS + + +AL+++Y KCG +E A + F    E + V+ + I   +A
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH--SLIIKSDFTSN 392
           +N    +A+++  +M   G+  +     +VL       +L  G++IH  + ++     S+
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V   L+NMYSKCG+L  +  +F ++A  + V WNS+IA  A+HG   KALEL+E M+L
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EG++PT +TF S+L ACSH G++++G +   S    H I P AEH+ C+VD++GRAG ++
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           ++   +  MP +P  + W A LGAC  + + +   +AAE LF   P   APY+L++N+Y+
Sbjct: 420 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYA 479

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +GRW + A+  + M+     KE G SWIE++ +VH F+  D  HP+   IH  L  L +
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 633 LMIDEGYVPNKRFILH 648
           LM + GYVP+   +LH
Sbjct: 540 LMKEAGYVPDTEMVLH 555



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 218/458 (47%), Gaps = 26/458 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS  LS         +G S+  + + T           +   +++  +L+S Y K   
Sbjct: 62  VGISIFLSACTDAREITIGRSIQLAILGT----------GIEEESIVQTALVSMYGKLGH 111

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             +A  +F  M  RD V+W+ MV+ + RNG      G F R ++L     ++ +    L 
Sbjct: 112 CTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLF-RQMDLDGVAPNKVTLVSGLD 170

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC          ++H  V   G +  V VG AL+  Y KCG   +  + FG++  +NV+ 
Sbjct: 171 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVA 230

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+A+ +   +N    + +++  +M L  + PNS T++S + AC+ + AL +GR+IH    
Sbjct: 231 WSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQ 290

Query: 285 KL--ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
            L   L+SD+ + +AL++MYSKCG++  A  +F+    LD V    ++   AQ+G  E+A
Sbjct: 291 VLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKA 350

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS--LGLGKQIHSLIIKSDFTSNPFVNN--G 398
           ++LF +M   G++  P +++    +F    +  L  G++ H +    D    P   +   
Sbjct: 351 LELFERMRLEGLQ--PTIITFTSVLFACSHAGMLDQGRK-HFVSFIGDHGIFPEAEHFGC 407

Query: 399 LINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVE 456
           ++++  + G + DS  +   M    + V+W + + A   + N  +A+   E + +L+  +
Sbjct: 408 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRK 467

Query: 457 PTDVTFLSLLHA----CSHVGLVNKGMEFLKSMTEVHR 490
                 LS ++A     S V  + + M+   ++ E  R
Sbjct: 468 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGR 505


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 312/558 (55%), Gaps = 5/558 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y+K  ++  A  +F+ MP  D VSWN ++SG + NG            L++ + 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELL---LQMKYS 297

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            L    FT+  IL AC  +    + + IH  +     + +  +G  L+  Y K       
Sbjct: 298 GLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDA 357

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RKVF  M  R++I   A+ISG      ++E L LF ++    +  N  T  + + + + L
Sbjct: 358 RKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASL 417

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +A    RQ+H +  K+    D  + + L+D Y KC  + DA ++FE     D ++ T ++
Sbjct: 418 EAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMI 477

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              +Q    E A++LF++M++ G+E DP ++S++L      ++   GKQ+H+ +IK  F 
Sbjct: 478 TALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ F  N L+  Y+KCG +ED+   FS +  R  VSW++MI   A+HG+G +ALEL+  M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             EG+ P  +T  S+L AC+H GLV++   +  SM E+  I    EHY+C++D++GRAG 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   +  MP + +  +W ALLGA  +H D E+GK AAEKLF+ +P+    ++L+AN 
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G W E AK  K MK+  + KE  +SWIE++ +VH+F+V DK HP    I+  L EL
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVEL 777

Query: 631 LRLMIDEGYVPNKRFILH 648
             LM   G+VPN    LH
Sbjct: 778 GDLMSKAGFVPNVDVDLH 795



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 167/645 (25%), Positives = 283/645 (43%), Gaps = 95/645 (14%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           IS+ L+  A       G  LHAS +K+             +     N L+SFY KC +  
Sbjct: 7   ISQQLTRYAAAQALLPGAHLHASLLKS------------GSLASFRNHLISFYSKCRRPC 54

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-------DQASF 159
            A ++FD++P    VSW+++V+ +  NG          RS    F+ +       ++ + 
Sbjct: 55  CARRVFDEIPDPCHVSWSSLVTAYSNNG--------LPRSAIQAFHGMRAEGVCCNEFAL 106

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
            ++L     + L      +H +    G+  +V V NAL+  Y   G     R+VF E   
Sbjct: 107 PVVLKCVPDARLG---AQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADS 163

Query: 220 -RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RN ++W  ++S  V+N    + +++F +M    I P    +   V AC+G + +  GRQ
Sbjct: 164 ERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQ 223

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H ++ ++    D+   +AL+DMY K G V+ A  IFE   + D VS   ++ G   NG 
Sbjct: 224 VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGH 283

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +  A++L ++M  +G+  +   +S++L       +  LG+QIH  +IK++  S+ ++  G
Sbjct: 284 DHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG 343

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY+K   L+D+ KVF  M  R+ +  N++I+  +  G   +AL L+ E++ EG+   
Sbjct: 344 LVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVN 403

Query: 459 DVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRISPRAEHY---ACVVDM 504
             T  ++L + +           H   V  G  F     + H ++   + Y   +C+ D 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIF-----DAHVVNGLIDSYWKCSCLSDA 458

Query: 505 -----VGRAGLLIEARSFIE-------------------RMPVKPDVLVWQALLGACSIH 540
                   +G +I   S I                    R  ++PD  V  +LL AC+  
Sbjct: 459 NRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASL 518

Query: 541 GDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
              E GK     L   Q   D+ A   L+     C G  ++   A   + E GV     +
Sbjct: 519 SAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-GSIEDAELAFSSLPERGV-----V 572

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLA-ELLRLMIDEGYVPN 642
           SW  +            +   A   HG  A EL   M+DEG  PN
Sbjct: 573 SWSAM------------IGGLAQHGHGKRALELFGRMVDEGINPN 605


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/595 (35%), Positives = 328/595 (55%), Gaps = 13/595 (2%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           HF L  S   S       FD     NV +    +N+L++ Y K   +  A ++FD++P  
Sbjct: 49  HFTLLYSKCGSLHNAQTSFDLTQYPNVFS----YNTLINAYAKHSLIHLARQVFDEIPQP 104

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D VS+NT+++ +   GE       F    EL F  LD  + + ++ AC   ++ LV + +
Sbjct: 105 DIVSYNTLIAAYADRGECRPALRLFAEVRELRF-GLDGFTLSGVIIACG-DDVGLV-RQL 161

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQN 235
           HC V +CGY+   +V NA++  Y + G  +  R+VF EM     R+ ++W A+I    Q+
Sbjct: 162 HCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQH 221

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           +   E ++LF +M    +  +  T  S + A + ++ L  G Q HG++ K     +  + 
Sbjct: 222 REGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVG 281

Query: 296 SALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQ-NGFEEEAMQLFVKMVKAG 353
           S L+D+YSKC G + +  ++FE     D V    ++ GF+Q     E+ +  F +M   G
Sbjct: 282 SGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNG 341

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDS 412
              D      V       +S  +GKQ+H+L IKSD   N   VNN L+ MYSKCG++ D+
Sbjct: 342 FHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDA 401

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +VF  M   N VS NSMIA +A+HG   ++L L+E M  + + P  +TF+++L AC H 
Sbjct: 402 RRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHT 461

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G V +G ++   M E  RI P AEHY+C++D++GRAG L EA   IE MP  P  + W  
Sbjct: 462 GKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWAT 521

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LLGAC  HG+ E+   AA +    +P + APY++++N+Y+ + RW+E A   + M+E GV
Sbjct: 522 LLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            K+ G SWIEI+K+VH FV +D  HP    IH  + E+LR M   GYVP+ R+ L
Sbjct: 582 KKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWAL 636



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 147/319 (46%), Gaps = 39/319 (12%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW------ 312
           T+ + + AC   + L  G+ +H + +K  +     + +    +YSKCGS+ +A       
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 313 -------------------------QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                                    Q+F+   + D VS   ++  +A  G    A++LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           ++ +    +D   +S V+   G D  +GL +Q+H  ++   +     VNN ++  YS+ G
Sbjct: 131 EVRELRFGLDGFTLSGVIIACGDD--VGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKG 188

Query: 408 DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
            L ++ +VF  M     R+ VSWN+MI A  +H  G +A+EL+ EM   G++    T  S
Sbjct: 189 FLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMAS 248

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLIEARSFIERMPV 523
           +L A + V  +  GM+F   M +       +   + ++D+  + AG ++E R   E +  
Sbjct: 249 VLTAFTCVKDLVGGMQFHGMMIK-SGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAA 307

Query: 524 KPDVLVWQALLGACSIHGD 542
            PD+++W  ++   S + D
Sbjct: 308 -PDLVLWNTMISGFSQYED 325


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 336/602 (55%), Gaps = 25/602 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S  L ISAK+G+   G  LHA  IK          +       + N +LS YLKC +  +
Sbjct: 64  SNALKISAKKGYLPEGKQLHAHLIK----------FGFCQVLSLQNQILSVYLKCQEAED 113

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFL-RNGEFD-----MGFGFFKRSLELGFYQLDQASFTI 161
           A KLF+++P+R+ VSWN M+   + RN E +     + F +F+R L L     D  +F  
Sbjct: 114 AKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRML-LEMMVPDHITFNG 172

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           ++  C +     +   +HC     G++ +  VG AL+  Y KCG   + R+VF ++  R+
Sbjct: 173 LICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVFCDVSCRD 232

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY--LSSVMACSGLQALCEGRQI 279
           ++ W  ++S  V N L EE  ++F  M L ++N +  T+  L SV++   L+    G+Q+
Sbjct: 233 LVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQV 292

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H ++ + +  SD+ + SAL++MY+K  ++ DA ++F+     + V+   ++VGF  +G  
Sbjct: 293 HSLVLRQSFDSDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDG 352

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK---SDFTSNPFVN 396
            E M+L  +M++ G   D   +S+++   G  +++    Q+H+  +K    DF S   V 
Sbjct: 353 NEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETLQVHAFAVKLSCQDFLS---VA 409

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N LI+ YSKCG +  + K F   +  + V+W S+I A+A HG   K+ E++E+M   G++
Sbjct: 410 NSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIK 469

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P  + FL +L AC+H GLV KG+ + K MT  ++I P +EHY C+VD++GR GL+ EA  
Sbjct: 470 PDRIAFLGVLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFE 529

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            +  MP++ D     A +G+C +H + E+ K AAEKLFL +P+    Y +M+NI++    
Sbjct: 530 ILRSMPIEVDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKH 589

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W +  +  K M++    K  G SWIEI  Q+HSFV +DK HP A  ++  L  LLR M +
Sbjct: 590 WYDVERIRKTMEDKRDAKVPGCSWIEIGNQIHSFVSNDKSHPNALEMYVTLNMLLRPMKE 649

Query: 637 EG 638
           + 
Sbjct: 650 QN 651


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 202/599 (33%), Positives = 344/599 (57%), Gaps = 25/599 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S  L ISAK G  H G  LHA  IK      N N+ +      + N +L  Y+KC +  +
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIK----LGNCNLLS------LQNQVLHVYVKCKEFND 126

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLR-NGEF---DMGFGFFKR-SLELGFYQLDQASFTII 162
             K+FD+MP+++ VSWNT++ G +  N +F    +GF +F++  LE+       A   I 
Sbjct: 127 VCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEM------MAPNCIT 180

Query: 163 LSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           L+   R+ + L    + + +HC +   G++    VG+AL+ SY K G     +  F E+ 
Sbjct: 181 LNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVS 240

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+++ W  ++S    N +  +   +F  M L  +  ++ T+ S + +C  L +   G+Q
Sbjct: 241 SRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQ 300

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG++ +L+   D+ + SAL+DMYSK  ++EDA + F+     + VS T ++VG+ Q+G 
Sbjct: 301 VHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGD 360

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            +EAM+L  +M++     D   ++++L   G  ++     Q+H+ ++++ F +   + N 
Sbjct: 361 GKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANA 420

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++ YSKCG +  + + FS +A  + +SW S++ A+A HG   + +E++E+M    V P 
Sbjct: 421 LVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPD 480

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            V FL +L AC+H G V +G+ +   M  V++I P +EHY C++D++GRAG L EA + +
Sbjct: 481 KVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLL 540

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
             MPV+P      A LGAC +H +  + ++A+EKLF+ +P+ PA Y LM+N+Y+  G W 
Sbjct: 541 TSMPVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWF 600

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           + A+  K M+E    K  G SW+EI  +VH+FV  DK HP+A  ++G+L  L+RLM ++
Sbjct: 601 DVARVRKLMRERCDFKVPGCSWMEIAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMEED 659


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 328/595 (55%), Gaps = 15/595 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           LD Y   S L  I A  G FHLG  +H+  IK       +NVY         ++LL  Y 
Sbjct: 97  LDRYTFGSMLKGI-AFAGMFHLGQQVHSIIIKMGYA---ENVY-------AGSALLDMYA 145

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC+++ +A   F  +   +TVSWN M++G+ + G+ +  F      +E    ++D  ++ 
Sbjct: 146 KCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLD-CMEQEGEKVDDGTYA 204

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRV 219
            +L   D ++   ++  +H  +   G E   T+ NALITSY KCGS    +++F     +
Sbjct: 205 PLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGI 264

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+++TW ++++  +     +   KL + M      P+  +Y S + AC        GR +
Sbjct: 265 RDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSL 324

Query: 280 HGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           HG++ K   +  + I +AL+ MY  S  GS+++A  IFE  E  D VS   IL G +Q G
Sbjct: 325 HGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTG 384

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E+A++ F+ M  A ++ID    SAVL       +  LG+QIH L +K    SN FV++
Sbjct: 385 SSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSS 444

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI MYSKCG +ED+ + F   +  +S++WN+++  +A+HG    AL+L+  M+ + V+ 
Sbjct: 445 SLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKM 504

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             +TF+++L ACSH+GLV +G +FL+ M   + + PR EHYAC VD+ GR+G L EA++ 
Sbjct: 505 DHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKAL 564

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           IE MP KPD  VW+  LGAC   G+ E+    A  L   +P+    Y+L++N+Y    RW
Sbjct: 565 IEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRW 624

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            E+AK  + MKE GV K  G SWIE+   VH+F+  D  HP    I+ +L  LL 
Sbjct: 625 DEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLE 679



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 222/456 (48%), Gaps = 14/456 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++L+ Y KC ++R+A  LFD+MPMRD+VSWNTM++G +  G  +  +   +     GF 
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGF- 95

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD+ +F  +L     + +  + + +H ++   GY E V  G+AL+  Y KC        
Sbjct: 96  ELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYL 155

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  +   N ++W A+I+G  Q    E    L   M       +  TY   +        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILV 331
                Q+HG + K  L+    + +AL+  YSKCGS++DA +IF+ +  + D V+   +L 
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLA 275

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +     E+ A +L + M + G E D    ++++     +     G+ +H L+IK  F  
Sbjct: 276 AYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQ 335

Query: 392 NPFVNNGLINMY--SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           +  ++N LI+MY  S  G +++++ +F  +  ++ VSWNS++   ++ G+   A++ +  
Sbjct: 336 SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLH 395

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMV 505
           M+   ++    +F ++L +CS +     G +     LK   E +     +     ++ M 
Sbjct: 396 MRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSS-----LIFMY 450

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + G++ +AR   E    K   + W AL+   + HG
Sbjct: 451 SKCGIIEDARRSFEEAS-KNSSITWNALMFGYAQHG 485



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 182/388 (46%), Gaps = 10/388 (2%)

Query: 163 LSACDRSELSLVSKMI-HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           LSA   S  +L + ++ H L    G   +V   N ++  Y+KC    S   +F EM +R+
Sbjct: 4   LSAVGTSFRALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRD 63

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV--MACSGLQALCEGRQI 279
            ++W  +I+G +     E    +   M       +  T+ S +  +A +G+  L  G+Q+
Sbjct: 64  SVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHL--GQQV 121

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H I+ K+    ++   SAL+DMY+KC  +EDA+  F    + + VS   ++ G+AQ G  
Sbjct: 122 HSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDR 181

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E A  L   M + G ++D    + +L +        L  Q+H  IIK        + N L
Sbjct: 182 ETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNAL 241

Query: 400 INMYSKCGDLEDSIKVF-SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           I  YSKCG L+D+ ++F S    R+ V+WNS++AA+        A +L  +M+  G EP 
Sbjct: 242 ITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPD 301

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA--GLLIEARS 516
             ++ S++ AC +  + N G   L  +               ++ M  ++  G + EA  
Sbjct: 302 LYSYTSIISACFNENISNNGRS-LHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALC 360

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSE 544
             E +  K D + W ++L   S  G SE
Sbjct: 361 IFESLEFK-DRVSWNSILTGLSQTGSSE 387


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 195/584 (33%), Positives = 325/584 (55%), Gaps = 40/584 (6%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN +L+ Y +  ++R+A  LFD MP +D VSWN M+SG++R+G  D     F R      
Sbjct: 98  WNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDR-----M 152

Query: 152 YQLDQASFTIILSACDRS----------ELSLVSKMIHCLVYLCGYEEEVTVG------- 194
              +  S+  +L+A  RS          E     ++I C   + GY +   +G       
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFD 212

Query: 195 ----------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
                     N +I+ Y + G  S  R++F E  VR+V TWTA++   VQ+ + +E  ++
Sbjct: 213 QIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRV 272

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F +M         ++Y   +   +  + +  GR+    L++     ++   + ++  Y +
Sbjct: 273 FDEM----PQKREMSYNVMIAGYAQYKRMDMGRE----LFEEMPFPNIGSWNIMISGYCQ 324

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G +  A  +F+   + D VS   I+ G+AQNG  EEAM + V+M + G  ++ +     
Sbjct: 325 NGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCA 384

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           L       +L LGKQ+H  ++++ +     V N L+ MY KCG ++++  VF  +  ++ 
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           VSWN+M+A +ARHG G +AL ++E M   GV+P ++T + +L ACSH GL ++G E+  S
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHS 504

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M + + I+P ++HYAC++D++GRAG L EA++ I  MP +PD   W ALLGA  IHG+ E
Sbjct: 505 MNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNME 564

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           +G+ AAE +F  +P +   Y+L++N+Y+ SGRW + +K   +M+++GV K  G SW+E++
Sbjct: 565 LGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQ 624

Query: 605 KQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            ++H+F V D  HP+   I+  L EL   M  EGYV + + +LH
Sbjct: 625 NKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLH 668



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 236/518 (45%), Gaps = 56/518 (10%)

Query: 57  EGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
            G F+L   LH+S      P +    +     TV     +S +++      A+ +FD MP
Sbjct: 2   RGKFNL-RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMP 60

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
           +R++VS+N M+SG+LRN +F +    F +         D  S+ ++L+   R+     ++
Sbjct: 61  LRNSVSYNAMISGYLRNAKFSLARDLFDK-----MPHKDLFSWNLMLTGYARNRRLRDAR 115

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           M+    +    E++V   NA+++ Y + G     R VF  M  +N I+W  +++  V++ 
Sbjct: 116 ML----FDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSG 171

Query: 237 LYEEGLKLF-VKMHLGLINPNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
             EE  +LF  K    LI+ N L   Y+   M       L + RQ    L+      DL 
Sbjct: 172 RLEEARRLFESKSDWELISCNCLMGGYVKRNM-------LGDARQ----LFDQIPVRDLI 220

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
             + ++  Y++ G +  A ++FE +   D  + T ++  + Q+G  +EA ++F +M +  
Sbjct: 221 SWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKR 280

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG----LINMYSKCGDL 409
            E+  N++ A    +     + +G+++        F   PF N G    +I+ Y + GDL
Sbjct: 281 -EMSYNVMIAGYAQY---KRMDMGREL--------FEEMPFPNIGSWNIMISGYCQNGDL 328

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
             +  +F  M  R+SVSW ++IA +A++G   +A+ +  EMK +G      TF   L AC
Sbjct: 329 AQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSAC 388

Query: 470 SHVGLVNKGMEFLKSMTEVH-RISPRAEHYAC-----VVDMVGRAGLLIEARSFIERMPV 523
           + +  +  G        +VH ++        C     +V M  + G + EA    + +  
Sbjct: 389 ADIAALELG-------KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPD 559
           K D++ W  +L   + HG         E +  A  +PD
Sbjct: 442 K-DIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPD 478


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 323/568 (56%), Gaps = 10/568 (1%)

Query: 87   NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            N   I N L++ Y K   + +A  +F+ M  +D+VSWN+++SG  +N   +     F R 
Sbjct: 893  NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRM 952

Query: 147  LELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               G      ++FT+I  LS+C      ++ + IHC     G + +V+V NAL+  Y + 
Sbjct: 953  RRTGSMP---SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAET 1009

Query: 205  GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSS 263
            G  +   KVF  M   + ++W +VI  L  ++    + +K F++M  G    + +T+++ 
Sbjct: 1010 GCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINI 1069

Query: 264  VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELD 322
            + A S L       QIH ++ K  L  D  I +AL+  Y KCG + +  +IF   +E  D
Sbjct: 1070 LSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRD 1129

Query: 323  GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             VS   ++ G+  N    +AM L   M++ G  +D    + VL       +L  G ++H+
Sbjct: 1130 EVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHA 1189

Query: 383  LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
              I++   S+  V + L++MYSKCG ++ + + F  M  RN  SWNSMI+ +ARHG+G K
Sbjct: 1190 CGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEK 1249

Query: 443  ALELYEEMKLEGVEPTDVT-FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL+L+  M L+G  P  V   L +L ACSHVG V +G E  KSM+EV+R+SPR EH++C+
Sbjct: 1250 ALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCM 1309

Query: 502  VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
            VD++GRAG L E   FI  MP+KP+VL+W+ +LGAC      ++E+G+ AAE L   +P 
Sbjct: 1310 VDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 1369

Query: 560  SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
            +   Y+L+AN+Y+   +W++ AKA   MKE  V KE G SW+ ++  VH FV  DK+HP+
Sbjct: 1370 NAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPE 1429

Query: 620  ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
             D I+  L EL R M D GY+P  ++ L
Sbjct: 1430 KDXIYDKLRELNRKMRDAGYIPQTKYAL 1457



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 233/477 (48%), Gaps = 21/477 (4%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            N+L++ Y++   + +A KLFD+M  R+ V+W  ++SG+ +NG+ D     F+  +  GF 
Sbjct: 583  NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 642

Query: 153  QLDQASFTIILSACDRSELS--LVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-GSSSS 209
              +  +F   L AC  S  S   +   IH L+    Y  +V V N LI+ Y  C  S++ 
Sbjct: 643  P-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 701

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGL-INPNSLTYLSSVM 265
             R VF  + +RN I+W ++IS   +         LF  M    LG    PN  T+ S + 
Sbjct: 702  ARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 761

Query: 266  -ACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
             ACS +   LC   Q+   + K     DL + SAL+  +++ G  +DA  IFE     + 
Sbjct: 762  AACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNV 821

Query: 324  VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGKQ 379
            VSM  ++VG  +    E A ++F +M K  + I+ +    +L  F     ++     G++
Sbjct: 822  VSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGRE 880

Query: 380  IHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            +H+ +I++    N   + NGL+NMY+K G + D+  VF  M  ++SVSWNS+I+   ++ 
Sbjct: 881  VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNE 940

Query: 439  NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
                A E +  M+  G  P++ T +S L +C+ +G +  G +      ++   +  +   
Sbjct: 941  CSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSN 1000

Query: 499  ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            A ++ +    G   E       MP + D + W +++GA S   DSE     A K FL
Sbjct: 1001 A-LLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGALS---DSEASVSQAVKYFL 1052



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 154/612 (25%), Positives = 271/612 (44%), Gaps = 119/612 (19%)

Query: 77   FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-------------------- 116
            FD   + N    ++ WNS++S Y +     +A  LF  M                     
Sbjct: 706  FDRIGIRN----SISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLIT 761

Query: 117  -------------------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKR------ 145
                                     ++D    + +VSGF R G  D     F++      
Sbjct: 762  AACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNV 821

Query: 146  ----SLELGFYQLDQA-------------------SFTIILSACDRSELSLVS------K 176
                 L +G  +  Q                    S+ ++LSA   SE S++       +
Sbjct: 822  VSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAF--SEFSVLEEGRRKGR 879

Query: 177  MIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
             +H  V   G  + +V +GN L+  Y K G+ +    VF  M  ++ ++W ++ISGL QN
Sbjct: 880  EVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQN 939

Query: 236  QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            +  E+  + F++M      P++ T +S++ +C+ L  +  G QIH    KL L +D+ + 
Sbjct: 940  ECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVS 999

Query: 296  SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGI 354
            +AL+ +Y++ G   +  ++F    E D VS   ++   + +     +A++ F++M++ G 
Sbjct: 1000 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGW 1059

Query: 355  EIDP----NMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
             +      N++SAV       +SL L     QIH+L++K   + +  + N L++ Y KCG
Sbjct: 1060 GLSRVTFINILSAV-------SSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCG 1112

Query: 408  DLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
            ++ +  K+F+RM+  R+ VSWNSMI+ +  +    KA++L   M  +G      TF ++L
Sbjct: 1113 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVL 1172

Query: 467  HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIER 520
             AC+ V  + +GM       EVH    RA   + V      VDM  + G +  A  F E 
Sbjct: 1173 SACASVATLERGM-------EVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFEL 1225

Query: 521  MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL--AQPDSPAPYILMANIYSCSGRWK 578
            MP++ +V  W +++   + HG  E       ++ L    PD  AP + + +  S  G  +
Sbjct: 1226 MPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVE 1284

Query: 579  ERAKAIKRMKEM 590
            E  +  K M E+
Sbjct: 1285 EGFEHFKSMSEV 1296



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 124/474 (26%), Positives = 211/474 (44%), Gaps = 58/474 (12%)

Query: 186  GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
            G+   + + N LI  Y + G   S +K+F EM  RN++TW  +ISG  QN   +E    F
Sbjct: 574  GFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARF 633

Query: 246  VKMHLGLINPNSLTYLSSVMAC--SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
              M      PN   + S++ AC  SG      G QIHG++ K    SD+ + + L+ MY 
Sbjct: 634  RDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 693

Query: 304  KC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI--EIDPN- 359
             C  S  DA  +F+     + +S   I+  +++ G    A  LF  M K G+     PN 
Sbjct: 694  SCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNE 753

Query: 360  -----MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
                 +++A      VD  L + +Q+ + + KS F  + +V + L++ +++ G  +D+  
Sbjct: 754  YTFGSLITAACS--SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKN 811

Query: 415  VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVG 473
            +F +M  RN VS N ++    +   G  A +++ EMK L G+     +++ LL A S   
Sbjct: 812  IFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSD--SYVVLLSAFSEFS 869

Query: 474  LVNKGMEFLKSMTEVH----RISPRAEHYAC---VVDMVGRAGLLIEARSFIERMPVKPD 526
            ++ +G    +   EVH    R        A    +V+M  ++G + +A S  E M V+ D
Sbjct: 870  VLEEGR---RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM-VEKD 925

Query: 527  VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAI 584
             + W +L+        +E  + AAE     +     P+ + L++ + SC+          
Sbjct: 926  SVSWNSLISGLD---QNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCA---------- 972

Query: 585  KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
                         + WI + +Q+H     D +    DT   V   LL L  + G
Sbjct: 973  ------------SLGWIMLGEQIHC----DGLKLGLDTDVSVSNALLALYAETG 1010



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/261 (31%), Positives = 134/261 (51%), Gaps = 14/261 (5%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           E R++H    K     +L + + L+++Y + G +  A ++F+     + V+   ++ G+ 
Sbjct: 562 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLIIKSDFTSN 392
           QNG  +EA   F  MV+AG   +     + L         G  LG QIH LI K+ + S+
Sbjct: 622 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 681

Query: 393 PFVNNGLINMYSKCGD-LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             V N LI+MY  C D   D+  VF R+  RNS+SWNS+I+ ++R G+   A +L+  M+
Sbjct: 682 VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQ 741

Query: 452 LEGV----EPTDVTFLSLL-HACSHVGLVNKGMEFLKSM-TEVHRISPRAEHY--ACVVD 503
            EG+    +P + TF SL+  ACS V     G+  L+ M   V +     + Y  + +V 
Sbjct: 742 KEGLGFSFKPNEYTFGSLITAACSSVDF---GLCVLEQMLARVEKSGFLQDLYVGSALVS 798

Query: 504 MVGRAGLLIEARSFIERMPVK 524
              R GL  +A++  E+M V+
Sbjct: 799 GFARFGLTDDAKNIFEQMGVR 819



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 13/173 (7%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
            +++H   IK  F  N F++N LIN+Y + GDL  + K+F  M+ RN V+W  +I+ + +
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 622

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G   +A   + +M   G  P    F S L AC        G    K   ++H +  +  
Sbjct: 623 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQE-----SGPSGCKLGVQIHGLISKTR 677

Query: 497 HYACVV---DMVGRAGLLI----EARSFIERMPVKPDVLVWQALLGACSIHGD 542
           + + VV    ++   G  +    +ARS  +R+ ++ + + W +++   S  GD
Sbjct: 678 YGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIR-NSISWNSIISVYSRRGD 729


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/455 (41%), Positives = 277/455 (60%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLI 253
           N LI  YF+ G   + RK+F EM  RNV TW A+++GL+Q +  EEGL LF +M+ LG +
Sbjct: 122 NILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFL 181

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+     S +  C+GL+AL  GRQ+HG + K   + +L + S+L  MY KCGS+ +  +
Sbjct: 182 -PDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGER 240

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +       + V+   ++ G AQNG+ EE +  +  M  AG   D     +V+       +
Sbjct: 241 LIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELAT 300

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           LG G+QIH+ +IK+  +    V + LI+MYS+CG LE S+KVF      + V W+SMIAA
Sbjct: 301 LGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAA 360

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG G +A++L+ +M+ E +E  DVTFLSLL+ACSH GL  KG++F   M E + + P
Sbjct: 361 YGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKP 420

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           R EHY C+VD++GR G + EA + I  MPVK DV+ W+ LL AC IH  +EM +  +E++
Sbjct: 421 RLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEV 480

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F   P  P PY+L++NI++   RW + +   K M++  + KE GISW+E++ Q+H F + 
Sbjct: 481 FRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMG 540

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           DK HP++  I   L EL   M   GYVP+   +LH
Sbjct: 541 DKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLH 575



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 209/459 (45%), Gaps = 53/459 (11%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S LL     E    LG  LH+  I +             +   I N LL+ Y KC Q+  
Sbjct: 56  SHLLQSCISENSLSLGKQLHSLIITS----------GCSSDKFISNHLLNLYSKCGQLDT 105

Query: 108 AV-------------------------------KLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           A+                               K+FD+MP R+  +WN MV+G ++    
Sbjct: 106 AITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFN 165

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
           + G G F R  ELGF   D+ +   +L  C      +  + +H  V  CG+E  + V ++
Sbjct: 166 EEGLGLFSRMNELGFLP-DEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSS 224

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L   Y KCGS   G ++   M  +NV+ W  +I+G  QN   EE L  +  M +    P+
Sbjct: 225 LAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPD 284

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            +T++S + +CS L  L +G+QIH  + K      + + S+L+ MYS+CG +E + ++F 
Sbjct: 285 KITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFL 344

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
             E  D V  + ++  +  +G   EA+ LF +M +  +E +       L +    +  GL
Sbjct: 345 ECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEAND---VTFLSLLYACSHCGL 401

Query: 377 ---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSM 430
              G +   L+++  +   P + +   ++++  + G +E++  +   M  + + ++W ++
Sbjct: 402 KEKGIKFFDLMVEK-YGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTL 460

Query: 431 IAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHA 468
           ++A   H     A  + EE+ +L+  +P     LS +HA
Sbjct: 461 LSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHA 499



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 151/320 (47%), Gaps = 39/320 (12%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+  ++L  + +C    +L  G+Q+H ++      SD  I + L+++YSKCG ++ A  +
Sbjct: 52  PSLFSHL--LQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITL 109

Query: 315 FEFAEELDGVSMTVILVGFAQNG-------------------------------FEEEAM 343
           F      + +S  +++ G+ ++G                               F EE +
Sbjct: 110 FGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGL 169

Query: 344 QLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
            LF +M + G   D   + +VL G  G+  +L  G+Q+H  + K  F  N  V + L +M
Sbjct: 170 GLFSRMNELGFLPDEFALGSVLRGCAGL-RALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG L +  ++   M  +N V+WN++IA  A++G   + L+ Y  MK+ G  P  +TF
Sbjct: 229 YMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITF 288

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL-IEARSFIERM 521
           +S++ +CS +  + +G +    + +    S      + ++ M  R G L    + F+E  
Sbjct: 289 VSVISSCSELATLGQGQQIHAEVIKAG-ASLIVSVISSLISMYSRCGCLEYSLKVFLE-- 345

Query: 522 PVKPDVLVWQALLGACSIHG 541
               DV+ W +++ A   HG
Sbjct: 346 CENGDVVCWSSMIAAYGFHG 365



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 54/291 (18%)

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
           G  +T         G  ++A   F     + I  +P++ S +L     + SL LGKQ+HS
Sbjct: 21  GSELTAEFTNLCSKGHLKQAFDRF----SSHIWSEPSLFSHLLQSCISENSLSLGKQLHS 76

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSI----------------------------- 413
           LII S  +S+ F++N L+N+YSKCG L+ +I                             
Sbjct: 77  LIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVT 136

Query: 414 --KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
             K+F  M  RN  +WN+M+A   +     + L L+  M   G  P +    S+L  C+ 
Sbjct: 137 ARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCA- 195

Query: 472 VGLVNKGMEFLKSMTEVHRISPRA--EHYACVVD----MVGRAGLLIEARSFIERMPVKP 525
                 G+  L +  +VH    +   E    VV     M  + G L E    I  MP + 
Sbjct: 196 ------GLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQ- 248

Query: 526 DVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           +V+ W  L+   + +G  E  + +Y   K+   +PD       ++ I SCS
Sbjct: 249 NVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDK---ITFVSVISSCS 296


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 231/684 (33%), Positives = 359/684 (52%), Gaps = 69/684 (10%)

Query: 3   SKWVFLKLNSNF-------PFCSSLVSPFITKI----IQDPTSSTSKLVLDNYVDI-SRL 50
           ++ +FLKL  +        PF   L S    K+    ++   +S  K    N V I +RL
Sbjct: 2   ARKIFLKLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRL 61

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           +   AK G    G  L       F+    +NV+        WNS+++   K   +  A  
Sbjct: 62  IDAYAKCGSLEDGRQL-------FDKMPQRNVFT-------WNSVVTGLTKLGFLDEADS 107

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LF  MP RD  +WN+MVSGF ++   +    +F    + GF  L++ +F   LSAC  S 
Sbjct: 108 LFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFV-LNEYTFASGLSAC--SG 164

Query: 171 LSLVSK--MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           L+ +++   IH L+       +V +G+AL+  Y KCG+ +  ++VF EM  RNV++W ++
Sbjct: 165 LNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSL 224

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-A 287
           I+   QN    E LK+F  M    + P+ +T  S + AC+ L A+  G+++H  + K+  
Sbjct: 225 ITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDK 284

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFE-------FAE--------------------- 319
           L++D+ + +A +DMY+KC  +++A  IF+        AE                     
Sbjct: 285 LRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFT 344

Query: 320 ---ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              E + VS   ++ G+ QNG  EEA+ LF  + +  +       + +L        L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHL 404

Query: 377 GKQIHSLIIKSDFT------SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
           G Q H  ++K  F        + FV N LI+MY KCG +E+   VF +M  R+ VSWN+M
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAM 464

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  FA++G G +ALEL+ EM   G +P  +T + +L AC H G V +G  +  SMT    
Sbjct: 465 IIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFG 524

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           ++P  +HY C+VD++GRAG L EA+S IE MPV+PD ++W +LL AC +H +  +GKY A
Sbjct: 525 VAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVA 584

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           EKLF  +  +  PY+L++N+Y+  G+W +     K M++ GV K+ G SWI+I    H F
Sbjct: 585 EKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVF 644

Query: 611 VVDDKMHPQADTIHGVLAELLRLM 634
           +V DK HP+   IH +L  L+  M
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEM 668


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 322/563 (57%), Gaps = 15/563 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y K   + +A  +FD++   D VSWN +++G + +        +  R+LEL   
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE-------YHHRALEL-LR 201

Query: 153 QLDQAS-----FTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +++++      FT+   L AC    L  + + +H  +       +  +G  LI  Y KC 
Sbjct: 202 EMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN 261

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S    R VF  M  R++I W AVISG  QN+  EE   LF  MH   I  N  T  + + 
Sbjct: 262 SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLK 321

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + + LQA    RQIH +  K   + D  + ++L+D Y KCG VEDA ++FE +  +D V 
Sbjct: 322 SIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVL 381

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T ++  +AQ+G  EEA++L+++M   GI+ D  + S++L      ++   GKQ+H  I+
Sbjct: 382 FTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL 441

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S+ F  N L+NMY+KCG +ED+   FSR+  R  VSW++MI   A+HG G +AL+
Sbjct: 442 KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQ 501

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+++M   GV P  +T +S+L AC+H GLV +   +  SM  +  I P  EHYAC++D++
Sbjct: 502 LFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLL 561

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L  A   + +MP + + LVW ALLGA  IH + ++G+ AAE L   +P+    ++
Sbjct: 562 GRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHV 621

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L+ANIY+  G W + A+  + MK+  V KE G+SW+E++ +V++F+V D+ H ++  I+ 
Sbjct: 622 LLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYA 681

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L EL  L+   GYVP     LH
Sbjct: 682 KLDELSDLLKKAGYVPMVEIDLH 704



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 238/453 (52%), Gaps = 7/453 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y KC    +A  LFD +P R  VSWN + S ++ +         F   + L 
Sbjct: 47  VANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLF-HDMVLS 105

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ S + +++ C   E S+  + IH  +   GY+ +    NAL+  Y K G     
Sbjct: 106 GIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDA 165

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF E+   ++++W A+I+G V ++ +   L+L  +M+   + PN  T  S++ AC+G+
Sbjct: 166 SSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGM 225

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                GRQ+H  L K+ + SD  +   L+DMYSKC S++DA  +F+   E D ++   ++
Sbjct: 226 ALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVI 285

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G +QN  +EEA  LF  M   GI  +   +S VL       +  + +QIH+L +KS F 
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + +V N LI+ Y KCG +ED+ +VF      + V + S++ A+A+ G G +AL LY EM
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRA 508
           +  G++P      SLL+AC+ +    +G +       + +    ++ +A   +V+M  + 
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQV---HVHILKFGFMSDIFAGNSLVNMYAKC 462

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G + +A     R+PV+  ++ W A++G  + HG
Sbjct: 463 GSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHG 494



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 229/433 (52%), Gaps = 25/433 (5%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++ +F  +L AC  ++  ++ K +H +V + G++ +  V N+L+  Y KCG     R 
Sbjct: 7   KCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARS 66

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  +  R+V++W A+ S  V + ++ E + LF  M L  I PN  +  S +  C+GL+ 
Sbjct: 67  LFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLED 126

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             +GR+IHG L KL   SD    +AL+DMY+K G +EDA  +F+   + D VS   I+ G
Sbjct: 127 SVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              + +   A++L  +M K+G  + PNM  +S+ L          LG+Q+HS +IK D  
Sbjct: 187 CVLHEYHHRALELLREMNKSG--MCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ F+  GLI+MYSKC  ++D+  VF  M  R+ ++WN++I+  +++    +A  L+  M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYAC--VVDM 504
             EG+     T  ++L + +        ++      ++H +S ++    ++Y    ++D 
Sbjct: 305 HTEGIGFNQTTLSTVLKSIA-------ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDT 357

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SP 561
            G+ G + +A    E  P+  D++++ +L+ A +  G  E     A +L+L   D    P
Sbjct: 358 YGKCGHVEDATRVFEESPI-VDLVLFTSLVTAYAQDGQGE----EALRLYLEMQDRGIKP 412

Query: 562 APYILMANIYSCS 574
             ++  + + +C+
Sbjct: 413 DSFVCSSLLNACA 425



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 158/304 (51%), Gaps = 7/304 (2%)

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           MHL  I  N   + S + AC+  + L  G+Q+HGI+      SD  + ++L+ +Y+KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
             DA  +F+   +   VS   +   +  +    EA+ LF  MV +GI  +   +S+++ V
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 368 -FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             G++ S+  G++IH  +IK  + S+ F  N L++MY+K G LED+  VF  +A  + VS
Sbjct: 121 CTGLEDSVQ-GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVS 179

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN++IA    H    +ALEL  EM   G+ P   T  S L AC+ + L   G +   S+ 
Sbjct: 180 WNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLI 239

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           ++   S        ++DM  +   + +AR   + MP + D++ W A++   S H  +E  
Sbjct: 240 KMDMGSDSFLGVG-LIDMYSKCNSMDDARLVFKLMPER-DMIAWNAVI---SGHSQNEED 294

Query: 547 KYAA 550
           + AA
Sbjct: 295 EEAA 298



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 20/283 (7%)

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           GI+ +     +VL    V   L LGKQ+H +++ + F S+ FV N L+ +Y+KCG   D+
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +F  +  R+ VSWN++ + +       +A+ L+ +M L G+ P + +  S+++ C+ +
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
               +G +    + ++   S      A +VDM  + G+L +A S  + +  KPD++ W A
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANA-LVDMYAKVGILEDASSVFDEI-AKPDIVSWNA 182

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCSGR-----WKERAKAIK 585
           ++  C +H   E    A E L         P  + L + + +C+G       ++   ++ 
Sbjct: 183 IIAGCVLH---EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLI 239

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDD-----KMHPQADTI 623
           +M +MG D   G+  I++  + +S  +DD     K+ P+ D I
Sbjct: 240 KM-DMGSDSFLGVGLIDMYSKCNS--MDDARLVFKLMPERDMI 279


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 326/601 (54%), Gaps = 15/601 (2%)

Query: 48   SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
            S +LS  A   +  LG  LH+  IK      N+   N+     + N+L+  Y K   + +
Sbjct: 432  SSILSACACLKYLDLGHQLHSVIIK------NKFASNL----FVGNALVDMYAKSGALED 481

Query: 108  AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            A + F+ +  RD VSWN ++ G+++  +    F  F+R   LG    D+ S   ILSAC 
Sbjct: 482  ARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILP-DEVSLASILSACA 540

Query: 168  RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                    K +HCL    G E ++  G++LI  Y KCG+  S  K+   M  R+V++  A
Sbjct: 541  SVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNA 600

Query: 228  VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
            +I+G  Q  L E+ + LF  M +  IN   +T+ S + AC   Q L  GRQIH ++ K+ 
Sbjct: 601  LIAGYAQINL-EQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMG 659

Query: 288  LQ-SDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
            LQ  D  +  +L+ MY       DA  +F EF+     V  T ++ G +QN     A+QL
Sbjct: 660  LQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQL 719

Query: 346  FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            + +M    +  D     + L    V +S+  G + HSLI  + F S+   ++ L++MY+K
Sbjct: 720  YKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAK 779

Query: 406  CGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
            CGD++ S++VF  M+ +  V SWNSMI  FA++G    AL +++EMK   V P DVTFL 
Sbjct: 780  CGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLG 839

Query: 465  LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
            +L ACSH G V++G      M  ++ + PRA+H AC+VD++GR G L EA  FI ++  +
Sbjct: 840  VLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFE 899

Query: 525  PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            PD  VW  +LGAC IHGD   G+ AAEKL   +P + +PY+L++NIY+ SG W E     
Sbjct: 900  PDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLR 959

Query: 585  KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
            + M+E GV K  G SWI + ++ + FV  DK H  A  I  +L +L  LM +  YV    
Sbjct: 960  REMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLMRENDYVVQLD 1019

Query: 645  F 645
            F
Sbjct: 1020 F 1020



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 238/446 (53%), Gaps = 7/446 (1%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           + ++ + D  V++ ++   S   G+  +G  L    +K F+    + V   P+  V + +
Sbjct: 212 TDARSIFDGAVELDKVSWTSMIGGYIKVG--LPEEAVKVFQEM--EKVGQEPD-QVAFVT 266

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ Y+   ++ NA  LF  MP R+ V+WN M+SG  + G       FF+   + G  + 
Sbjct: 267 VINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGI-KS 325

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
            +++   +LSA           ++H      G    V VG++L++ Y KCG   + +KVF
Sbjct: 326 TRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVF 385

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +  +NV+ W A++ G VQN    E ++LF  M      P+  TY S + AC+ L+ L 
Sbjct: 386 DTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLD 445

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+H ++ K    S+L + +AL+DMY+K G++EDA Q FE     D VS  VI+VG+ 
Sbjct: 446 LGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYV 505

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q   E EA  LF +M   GI  D   ++++L        L  GKQ+H L +K+   +  +
Sbjct: 506 QEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLY 565

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
             + LI+MY+KCG ++ + K+ + M  R+ VS N++IA +A+  N  +A+ L+ +M +EG
Sbjct: 566 SGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEG 624

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGME 480
           +  T++TF SLL AC     +N G +
Sbjct: 625 INSTEITFASLLDACHEQQKLNLGRQ 650



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 213/445 (47%), Gaps = 38/445 (8%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N ++  Y KC  +  A + F  +  +D ++WN+++S   + G   +   +F      
Sbjct: 95  VLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNS 154

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G +  ++ +F I+LS+C R E+    + +HC V   G+E       ALI  Y KC   + 
Sbjct: 155 GVWP-NEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTD 213

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F      + ++WT++I G ++  L EE +K+F +M      P+ + +++ + A   
Sbjct: 214 ARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINA--- 270

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                                           Y   G +++A  +F      + V+  ++
Sbjct: 271 --------------------------------YVDLGRLDNASDLFSRMPNRNVVAWNLM 298

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G A+ G+  EA++ F  M KAGI+   + + +VL       +L  G  +H+  +K   
Sbjct: 299 ISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGL 358

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN +V + L++MY+KCG +E + KVF  +  +N V WN+M+  + ++G   + +EL+  
Sbjct: 359 HSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFN 418

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  G  P D T+ S+L AC+ +  ++ G + L S+   ++ +        +VDM  ++G
Sbjct: 419 MKSCGFYPDDFTYSSILSACACLKYLDLGHQ-LHSVIIKNKFASNLFVGNALVDMYAKSG 477

Query: 510 LLIEARSFIERMPVKPDVLVWQALL 534
            L +AR   E +  + +V  W  ++
Sbjct: 478 ALEDARQQFELIRNRDNV-SWNVII 501



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 181/375 (48%), Gaps = 51/375 (13%)

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           S+ S  +K+IH      G+  +  +GN ++  Y KC       + F ++  ++++ W ++
Sbjct: 72  SQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSI 131

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGL-----INPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +S        ++G    V  + GL     + PN  T+   + +C+ L+ +  GRQ+H  +
Sbjct: 132 LS-----MHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNV 186

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K+  +S    E AL+ MY+KC  + DA  IF+ A ELD VS T ++ G+ + G  EEA+
Sbjct: 187 VKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAV 246

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           ++F +M K G E  P+ V+ V                                  +IN Y
Sbjct: 247 KVFQEMEKVGQE--PDQVAFVT---------------------------------VINAY 271

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
              G L+++  +FSRM  RN V+WN MI+  A+ G G +A+E ++ M+  G++ T  T  
Sbjct: 272 VDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLG 331

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERM 521
           S+L A + +  ++ G   L    E  +    +  Y  + +V M  + G +  A+   + +
Sbjct: 332 SVLSAIASLAALDFG---LLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTL 388

Query: 522 PVKPDVLVWQALLGA 536
             + +V++W A+LG 
Sbjct: 389 N-EQNVVLWNAMLGG 402


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 205/564 (36%), Positives = 322/564 (57%), Gaps = 13/564 (2%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLEL 149
           +N+L++ Y K   +  A ++FD++P  D VS+NT+++ +   GE       F+  R L L
Sbjct: 78  YNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRL 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   LD  + + +++AC   ++ LV + +HC V +CG++   +V NA++  Y + G  S 
Sbjct: 138 G---LDGFTLSGVITACG-DDVGLV-RQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSE 192

Query: 210 GRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            R+VF EM     R+ ++W A+I    Q++   E + LF +M    +  +  T  S + A
Sbjct: 193 ARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLTA 252

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVS 325
            + ++ L  GRQ HG++ K     +  + S L+D+YSKC GS+ +  ++FE     D V 
Sbjct: 253 FTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVL 312

Query: 326 MTVILVGFA-QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              ++ GF+      E+ +  F +M + G   D      V       +S  LGKQ+H+L 
Sbjct: 313 WNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALA 372

Query: 385 IKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           IKSD   N   VNN L+ MYSKCG++ D+ +VF  M   N+VS NSMIA +A+HG   ++
Sbjct: 373 IKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVES 432

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+E M  + + P  +TF+++L AC H G V +G ++   M E   I P AEHY+C++D
Sbjct: 433 LRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMID 492

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L EA   IE MP  P  + W  LLGAC  HG+ E+   AA +    +P + AP
Sbjct: 493 LLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAP 552

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y++++N+Y+ + RW+E A   + M+E GV K+ G SWIEI+K+VH FV +D  HP    I
Sbjct: 553 YVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEI 612

Query: 624 HGVLAELLRLMIDEGYVPNKRFIL 647
           H  + ++L+ M   GYVP+ R+ L
Sbjct: 613 HVYMGKMLKKMKQAGYVPDIRWAL 636



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 145/319 (45%), Gaps = 39/319 (12%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW------ 312
           T+ + + AC   + L  G+ +H + +K  +     + +    +YSKCGS+ +A       
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 313 -------------------------QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                                    ++F+   + D VS   ++  +A  G     ++LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           ++ +  + +D   +S V+   G D  +GL +Q+H  ++         VNN ++  YS+ G
Sbjct: 131 EVRELRLGLDGFTLSGVITACGDD--VGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKG 188

Query: 408 DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
            L ++ +VF  M     R+ VSWN+MI A  +H  G +A+ L+ EM   G++    T  S
Sbjct: 189 FLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMAS 248

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLIEARSFIERMPV 523
           +L A + V  +  G +F   M +       +   + ++D+  + AG ++E R   E +  
Sbjct: 249 VLTAFTCVKDLVGGRQFHGMMIK-SGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEI-T 306

Query: 524 KPDVLVWQALLGACSIHGD 542
            PD+++W  ++   S++ D
Sbjct: 307 APDLVLWNTMISGFSLYED 325



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HA  IK+  P+         N   + N+L++ Y KC  + +A ++FD MP  +TV
Sbjct: 364 LGKQVHALAIKSDVPY---------NRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTV 414

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           S N+M++G+ ++G        F+  LE      +  +F  +LSAC
Sbjct: 415 SLNSMIAGYAQHGVEVESLRLFELMLEKDIAP-NSITFIAVLSAC 458


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 328/595 (55%), Gaps = 15/595 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           LD Y   S L  I A  G FHLG  +H+  IK       +NVY         ++LL  Y 
Sbjct: 97  LDRYTFGSMLKGI-AFAGMFHLGQQVHSIIIKMGYA---ENVY-------AGSALLDMYA 145

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC+++ +A   F  +   +TVSWN M++G+ + G+ +  F      +E    ++D  ++ 
Sbjct: 146 KCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLD-CMEQEGEKVDDGTYA 204

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRV 219
            +L   D ++   ++  +H  +   G E   T+ NALITSY KCGS    +++F     +
Sbjct: 205 PLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGI 264

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+++TW ++++  +     +   KL + M      P+  +Y S + AC        GR +
Sbjct: 265 RDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSL 324

Query: 280 HGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           HG++ K   +  + I +AL+ MY  S  GS+++A  IFE  E  D VS   IL G +Q G
Sbjct: 325 HGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTG 384

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E+A++ F+ M  A ++ID    SAVL       +  LG+QIH L +K    SN FV++
Sbjct: 385 SSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSS 444

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI MYSKCG +ED+ + F   +  +S++WN+++  +A+HG    AL+L+  M+ + V+ 
Sbjct: 445 SLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKM 504

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             +TF+++L ACSH+GLV +G +FL+ M   + + PR EHYAC VD+ GR+G L EA++ 
Sbjct: 505 DHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKAL 564

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           IE MP KPD  VW+  LGAC   G+ E+    A  L   +P+    Y+L++N+Y    RW
Sbjct: 565 IEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNLMRW 624

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            E+AK  + MKE GV K  G SWIE+   VH+F+  D  HP    I+ +L  LL 
Sbjct: 625 DEKAKVKRLMKERGVKKVPGWSWIEVNNNVHAFIAQDHSHPSCQQIYFLLEVLLE 679



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 222/456 (48%), Gaps = 14/456 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++L+ Y KC ++R+A  LFD+MPMRD+VSWNTM++G +  G  +  +   +     GF 
Sbjct: 37  NNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRCMRSCGF- 95

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD+ +F  +L     + +  + + +H ++   GY E V  G+AL+  Y KC        
Sbjct: 96  ELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYL 155

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  +   N ++W A+I+G  Q    E    L   M       +  TY   +        
Sbjct: 156 SFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADF 215

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILV 331
                Q+HG + K  L+    + +AL+  YSKCGS++DA +IF+ +  + D V+   +L 
Sbjct: 216 CNLTSQLHGKIIKHGLELVNTMCNALITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLA 275

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +     E+ A +L + M + G E D    ++++     +     G+ +H L+IK  F  
Sbjct: 276 AYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQ 335

Query: 392 NPFVNNGLINMY--SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           +  ++N LI+MY  S  G +++++ +F  +  ++ VSWNS++   ++ G+   A++ +  
Sbjct: 336 SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLH 395

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMV 505
           M+   ++    +F ++L +CS +     G +     LK   E +     +     ++ M 
Sbjct: 396 MRSAAMDIDHYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSS-----LIFMY 450

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + G++ +AR   E    K   + W AL+   + HG
Sbjct: 451 SKCGIIEDARRSFEEAS-KNSSITWNALMFGYAQHG 485



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 182/388 (46%), Gaps = 10/388 (2%)

Query: 163 LSACDRSELSLVSKMI-HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           LSA   S  +L + ++ H L    G   +V   N ++  Y+KC    S   +F EM +R+
Sbjct: 4   LSAVGTSFRALANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRD 63

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV--MACSGLQALCEGRQI 279
            ++W  +I+G +     E    +   M       +  T+ S +  +A +G+  L  G+Q+
Sbjct: 64  SVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHL--GQQV 121

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H I+ K+    ++   SAL+DMY+KC  +EDA+  F    + + VS   ++ G+AQ G  
Sbjct: 122 HSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDR 181

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E A  L   M + G ++D    + +L +        L  Q+H  IIK        + N L
Sbjct: 182 ETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNAL 241

Query: 400 INMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           I  YSKCG L+D+ ++F   A  R+ V+WNS++AA+        A +L  +M+  G EP 
Sbjct: 242 ITSYSKCGSLDDAKRIFDSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPD 301

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA--GLLIEARS 516
             ++ S++ AC +  + N G   L  +               ++ M  ++  G + EA  
Sbjct: 302 LYSYTSIISACFNENISNNGRS-LHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALC 360

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSE 544
             E +  K D + W ++L   S  G SE
Sbjct: 361 IFESLEFK-DRVSWNSILTGLSQTGSSE 387


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 327/596 (54%), Gaps = 11/596 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+  ++  LS+ A E     G  LH   +K          Y +     + N+L+S Y KC
Sbjct: 247 NFATLACFLSVCAAEADLLSGVQLHTLAVK----------YGLEPEVAVANTLVSMYAKC 296

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A +LF  MP  D V+WN M+SG ++NG  D     F    + G  Q D  +   +
Sbjct: 297 QCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGL-QPDSVTLASL 355

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L A          K IH  +       +V + +AL+  YFKC      + VF   +  +V
Sbjct: 356 LPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDV 415

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +  + +ISG V N++ E  +K+F  +    I PN++   S++ AC+ + A+  G+++HG 
Sbjct: 416 VIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGY 475

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K A +    +ESALMDMYSKCG ++ +  +F      D V+   ++  FAQNG  EEA
Sbjct: 476 VLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEA 535

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M+  G++ +   +S++L       ++  GK+IH +IIK    ++ F  + LI+M
Sbjct: 536 LDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDM 595

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG+LE +++VF  M  +N VSWNS+I+A+  HG   ++++L   M+ EG +   VTF
Sbjct: 596 YGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTF 655

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+L+ AC+H G V +G+   + MTE + I P+ EH +C+VD+  RAG L +A  FI  MP
Sbjct: 656 LALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMP 715

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            KPD  +W ALL AC +H + E+ + A+++LF   P +   Y+LM+NI + +GRW   +K
Sbjct: 716 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSK 775

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             + MK+  V K  G SW+++    H FV  DK HP ++ I+  L  L+  +  EG
Sbjct: 776 MRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 224/499 (44%), Gaps = 11/499 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL       H  LG  +HA  + T    D       P    +   L+  Y+   + R+AV
Sbjct: 42  LLRGCVAPSHLPLGLRIHARAV-TSGLLDAAG----PGPAALQTRLVGMYVLARRFRDAV 96

Query: 110 KLFDDMP---MRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLELGFYQLDQASFTIILSA 165
            +F  +P       + WN ++ GF   G   +   F+ K        + D  +   ++ +
Sbjct: 97  AVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKS 156

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C       + +++H      G + ++ VG+ALI  Y   G     R+VF  M  R+ + W
Sbjct: 157 CAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLW 216

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             ++ G V+       + LF  M     +PN  T    +  C+    L  G Q+H +  K
Sbjct: 217 NVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVK 276

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             L+ ++ + + L+ MY+KC  +E+AW++F      D V+   ++ G  QNG  ++A++L
Sbjct: 277 YGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRL 336

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F  M K+G++ D   ++++L           GK+IH  I+++    + F+ + L+++Y K
Sbjct: 337 FCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFK 396

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           C D+  +  VF      + V  ++MI+ +  +     A++++  +   G++P  V   S 
Sbjct: 397 CRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVAST 456

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+ +  +  G E L      +    R    + ++DM  + G L  +     +M  K 
Sbjct: 457 LPACASMAAMRIGQE-LHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAK- 514

Query: 526 DVLVWQALLGACSIHGDSE 544
           D + W +++ + + +G+ E
Sbjct: 515 DEVTWNSMISSFAQNGEPE 533


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 318/555 (57%), Gaps = 7/555 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRS 146
           V+  +++  Y K D + +A + F  +P     + N M+ G +R G   E    F F  RS
Sbjct: 273 VVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRS 332

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             +GF   D  S + + SAC   +  L    +HCL    G++ +V V NA++  Y KC +
Sbjct: 333 -GIGF---DVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKA 388

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF EM  R+ ++W A+I+ L QN+ YE+ +    +M    + P+  TY S + A
Sbjct: 389 LVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKA 448

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GLQ+L  G  +HG   K  L  D  + S ++DMY KCG + +A ++ +     + VS 
Sbjct: 449 CAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSW 508

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+ GF+ N   EEA + F +M+  G++ D    + VL       ++ LGKQIH  IIK
Sbjct: 509 NSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIK 568

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +   + ++++ L++MY+KCG++ DS+ +F +    + VSWN+MI  +A HG GF+ALE+
Sbjct: 569 QEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEM 628

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E M+   V P   TF+++L ACSHVGL++ G  +   MT  +++ P+ EH+AC+VD++G
Sbjct: 629 FERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILG 688

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+    EA  FI  MP++ D ++W+ LL  C I  D E+ + AA  +    PD  + YIL
Sbjct: 689 RSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYIL 748

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+Y+ SG+W + ++  + M++  + KE G SWIE++ ++H F+  DK+HP++  ++ +
Sbjct: 749 LSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEM 808

Query: 627 LAELLRLMIDEGYVP 641
           L  L+  M   GY P
Sbjct: 809 LNNLIVEMKLSGYEP 823



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 158/542 (29%), Positives = 258/542 (47%), Gaps = 54/542 (9%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L+ Y        A  LF  MP  D VSWN ++SG+ + G F    G    S+E
Sbjct: 70  TVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL---SVE 126

Query: 149 LGFYQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +    +  D+ +  ++L AC   E   +   IH +    G E +V  G+AL+  Y KC S
Sbjct: 127 MARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRS 186

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSS 263
                + F  M  RN ++W A I+G VQN+ Y  GL+LFV+M    LG+  P    Y S 
Sbjct: 187 LEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQP---AYASV 243

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
             +C+ +  L   RQ+H    K    +D  + +A++D+Y+K  S+ DA + F        
Sbjct: 244 FRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTV 303

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
            +   ++VG  + G   EA+QLF  M ++GI  D   +S V            G Q+H L
Sbjct: 304 QACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCL 363

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            IKS F  +  V N ++++Y KC  L ++  VF  M  R+SVSWN++IAA  ++      
Sbjct: 364 AIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDT 423

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR------AEH 497
           +    EM   G+EP D T+ S+L AC+       G++ L+  + VH  + +      A  
Sbjct: 424 IAYLNEMLRYGMEPDDFTYGSVLKACA-------GLQSLEYGSVVHGKAIKSGLGLDAFV 476

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
            + VVDM  + G++ EA+   +R+  + +++ W +++   S++  SE     A+K F   
Sbjct: 477 SSTVVDMYCKCGMITEAQKLHDRIGGQ-ELVSWNSIISGFSLNKQSE----EAQKFFSEM 531

Query: 558 PD---SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
            D    P  +     + +C+                       ++ IE+ KQ+H  ++  
Sbjct: 532 LDIGVKPDHFTYATVLDTCA----------------------NLATIELGKQIHGQIIKQ 569

Query: 615 KM 616
           +M
Sbjct: 570 EM 571



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 233/482 (48%), Gaps = 17/482 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HA  +KT    D +            ++L+  Y KC  + +A++ F  M  R++V
Sbjct: 154 LGVQIHAVAVKTGLEMDVR----------AGSALVDMYGKCRSLEDALRFFHGMGERNSV 203

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW   ++G ++N ++  G   F +   LG   + Q ++  +  +C        ++ +H  
Sbjct: 204 SWGAAIAGCVQNEQYTRGLELFVQMQRLGL-GVSQPAYASVFRSCAAITCLSTARQLHAH 262

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                +  +  VG A++  Y K  S    R+ F  +    V    A++ GLV+  L  E 
Sbjct: 263 AIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEA 322

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF  M    I  + ++      AC+ ++   +G Q+H +  K     D+C+ +A++D+
Sbjct: 323 LQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC ++ +A+ +F+  E+ D VS   I+    QN   E+ +    +M++ G+E D    
Sbjct: 383 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTY 442

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            +VL       SL  G  +H   IKS    + FV++ +++MY KCG + ++ K+  R+  
Sbjct: 443 GSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGG 502

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  VSWNS+I+ F+ +    +A + + EM   GV+P   T+ ++L  C+++  +  G + 
Sbjct: 503 QELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQI 562

Query: 482 LKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
              + +   +    + Y  + +VDM  + G + ++    E+   K D + W A++   ++
Sbjct: 563 HGQIIKQEML---GDEYISSTLVDMYAKCGNMPDSLLMFEKAQ-KLDFVSWNAMICGYAL 618

Query: 540 HG 541
           HG
Sbjct: 619 HG 620



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 132/301 (43%), Gaps = 40/301 (13%)

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           + ++L  + A +G  AL  G+  H  +          + + L+ MY++CG    A  +F+
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 317 FAEELDGVSMTVILV-------------------------------GFAQNGFEEEAMQL 345
                D VS   +L                                G+ Q G   +++ L
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            V+M + G+  D   ++ +L   G    L LG QIH++ +K+    +    + L++MY K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           C  LED+++ F  M  RNSVSW + IA   ++    + LEL+ +M+  G+  +   + S+
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASV 243

Query: 466 LHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
             +C+ +  ++   +     +K+     R+   A     +VD+  +A  L++AR     +
Sbjct: 244 FRSCAAITCLSTARQLHAHAIKNKFSADRVVGTA-----IVDVYAKADSLVDARRAFFSL 298

Query: 522 P 522
           P
Sbjct: 299 P 299



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 112/282 (39%), Gaps = 52/282 (18%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           ++L  G+  H+ ++ S F    FV+N L+ MY++CG    +  VF  M  R++VSWN+M+
Sbjct: 18  SALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTML 77

Query: 432 AAFARHGNGFKALELYE-------------------------------EMKLEGVEPTDV 460
            A+A  G+   A  L+                                EM   GV P   
Sbjct: 78  TAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRT 137

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEA 514
           T   LL AC        G+E L    ++H ++ +          + +VDM G+   L +A
Sbjct: 138 TLAVLLKACG-------GLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDA 190

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMG-----KYAAEKLFLAQPDSPAPYILMAN 569
             F   M  +  V  W A +  C  +     G     +     L ++QP   + +   A 
Sbjct: 191 LRFFHGMGERNSV-SWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAA 249

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
           I   S   +  A AIK   +   D+  G + +++  +  S V
Sbjct: 250 ITCLSTARQLHAHAIK--NKFSADRVVGTAIVDVYAKADSLV 289


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/557 (35%), Positives = 316/557 (56%), Gaps = 5/557 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  Y+KC ++ +A  LFD M  RD V+W  M+ G+   G+ +     F++  E G   
Sbjct: 70  ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 129

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D+ +   ++ AC +      +++I   +    ++ +V +G A+I  Y KCG   S R++
Sbjct: 130 -DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 188

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  +NVI+W+A+I+    +    + L LF  M    + P+ +T  S + ACS L+ L
Sbjct: 189 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNL 248

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GR IH I++K  L  D  + +AL+DMY KC  +EDA  +F+   E D V+ TV++ G+
Sbjct: 249 QMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGY 308

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSDFTS 391
           A+ G   E++ LF KM + G+   P+ V+ V  VF      ++   + I   I +  F  
Sbjct: 309 AECGNANESLVLFDKMREEGVV--PDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQL 366

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  +   +I+M++KCG +E + ++F RM  +N +SW++MIAA+  HG G KAL+L+  M 
Sbjct: 367 DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 426

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+ P  +T +SLL+ACSH GLV +G+ F   M E + +    +HY CVVD++GRAG L
Sbjct: 427 RSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRL 486

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   IE M V+ D  +W A LGAC  H D  + + AA  L   QP +P  YIL++NIY
Sbjct: 487 DEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIY 546

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           + +GRW++ AK    M +  + K  G +WIE++ + H F V D  HP++  I+ +L  L 
Sbjct: 547 ANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLG 606

Query: 632 RLMIDEGYVPNKRFILH 648
             +   GYVP+  F+LH
Sbjct: 607 NKLELVGYVPDTNFVLH 623



 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 237/451 (52%), Gaps = 8/451 (1%)

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           MV GF + G++   FG F+  +  G  + D  +   ++ AC   +   + ++IH +VY  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 59

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G + +  V  AL+  Y KC      R +F +M+ R+++TWT +I G  +     E L LF
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            KM    + P+ +  ++ V AC+ L A+ + R I   + +   Q D+ + +A++DMY+KC
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKC 179

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G VE A +IF+  EE + +S + ++  +  +G   +A+ LF  M+ +G+  D   ++++L
Sbjct: 180 GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLL 239

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L +G+ IH ++ K     + FV   L++MY KC ++ED+  +F +M  R+ V
Sbjct: 240 YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLV 299

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           +W  MI  +A  GN  ++L L+++M+ EGV P  V  ++++ AC+ +G ++K    +   
Sbjct: 300 TWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDY 358

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
            +  +          ++DM  + G +  AR   +RM  K +V+ W A++ A   HG    
Sbjct: 359 IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ--- 414

Query: 546 GKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
           G+ A +   + L     P    L++ +Y+CS
Sbjct: 415 GRKALDLFPMMLRSGILPNKITLVSLLYACS 445



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 186/357 (52%), Gaps = 11/357 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            ++  +++  Y KC  + +A ++FD M  ++ +SW+ M++ +  +G+       F+  L 
Sbjct: 166 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 225

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D+ +   +L AC   +   + ++IH +VY  G + +  V  AL+  Y KC    
Sbjct: 226 SGMLP-DKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 284

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R +F +M  R+++TWT +I G  +     E L LF KM    + P+ +  ++ V AC+
Sbjct: 285 DARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 344

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A+ + R I   + +   Q D+ + +A++DM++KCG VE A +IF+  EE + +S + 
Sbjct: 345 KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA 404

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLII 385
           ++  +  +G   +A+ LF  M+++GI   PN ++ V  ++   +  GL   G +  SL+ 
Sbjct: 405 MIAAYGYHGQGRKALDLFPMMLRSGIL--PNKITLVSLLYAC-SHAGLVEEGLRFFSLMW 461

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           + D++    V +   ++++  + G L++++K+   M   ++   W + + A   H +
Sbjct: 462 E-DYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKD 517


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 315/585 (53%), Gaps = 17/585 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +KT           + N+  + ++LL  Y K  ++    ++F +MPMR+ VS
Sbjct: 135 GELLHGYAVKT----------GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  +++G +R G       +F   +     + D  +F I L AC  S      + IH   
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSE-MWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 243

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++    V N L T Y KCG    G  +F +M +R+V++WT +I+ LVQ    E  +
Sbjct: 244 MKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAV 303

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + F++M    ++PN  T+ + +  C+ L  +  G Q+H ++  L L + L +E+++M MY
Sbjct: 304 QAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMY 363

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KCG +  +  IF      D VS + I+ G++Q G   EA +L   M   G +     ++
Sbjct: 364 AKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALA 423

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           +VL   G    L  GKQ+H+ ++         V + LINMY KCG +E++ ++F      
Sbjct: 424 SVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND 483

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSW +MI  +A HG   + ++L+E++   G+ P  VTF+ +L ACSH GLV+ G  + 
Sbjct: 484 DIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYF 543

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +M++ ++ISP  EHY C++D++ RAG L +A   IE MP   D +VW  LL AC +HGD
Sbjct: 544 NAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGD 603

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E G+  AE++   +P+    +I +ANIY+  G+W+E A   K MK  GV KE G SWI+
Sbjct: 604 VERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIK 663

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVL------AELLRLMIDEGYVP 641
           ++  V +FV  D+ HPQ + I+ +L       EL   + + G++P
Sbjct: 664 VKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCVQETGFLP 708



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 230/456 (50%), Gaps = 10/456 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N  L   +K   + NA ++FD M  +D +SW T++SG++   +       FK        
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D    ++   AC  +      +++H      G    V VG+AL+  Y K G    GR+
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRR 172

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM +RNV++WTA+I+GLV+    +E L  F +M    +  +S T+  ++ AC+   A
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 232

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH    K        + + L  MY+KCG +E    +FE     D VS T I+  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             Q G EE A+Q F++M ++ +  +    +AV+        +  G+Q+H+LI+     ++
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ MY+KCG L  S  +F  M  R+ VSW+++IA +++ G+  +A EL   M++
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRM 412

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRA 508
           EG +PT+    S+L AC ++ ++  G +        + +S   EH A V    ++M  + 
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKC 467

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + EA S I       D++ W A++   + HG S 
Sbjct: 468 GSIEEA-SRIFDAAENDDIVSWTAMINGYAEHGYSR 502



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 184/386 (47%), Gaps = 13/386 (3%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GL 252
           N  +    K G   + R++F +M  ++ I+WT +ISG V      E L LF  M +  GL
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 253 -INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            I+P  L+      AC     +  G  +HG   K  L + + + SAL+DMY+K G + + 
Sbjct: 113 RIDPFILSLAHK--ACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEG 170

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F      + VS T I+ G  + G+ +EA+  F +M ++ +E D    +  L      
Sbjct: 171 RRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADS 230

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +L  G++IH+  +K  F  + FV N L  MY+KCG LE  + +F +M+ R+ VSW ++I
Sbjct: 231 GALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTII 290

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
               + G    A++ +  M+   V P + TF +++  C+++  +  G E L ++     +
Sbjct: 291 TTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG-EQLHALILHLGL 349

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD-SEMGKYAA 550
           +        ++ M  + G L  +      M  + D++ W  ++   S  G  SE    A 
Sbjct: 350 AASLSVENSIMTMYAKCGQLTSSSVIFHEM-TRRDIVSWSTIIAGYSQGGHVSE----AF 404

Query: 551 EKLFLAQPDSPAPY-ILMANIYSCSG 575
           E L   + + P P    +A++ S  G
Sbjct: 405 ELLSWMRMEGPKPTEFALASVLSACG 430


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 314/545 (57%), Gaps = 4/545 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC+++ +A  +F  MP+R+ VSWN ++ GF++ G+ D  F       + G  
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGV- 199

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++  +F  +L+  D  +   ++  +HC +   G E    + NA +T+Y +CG     ++
Sbjct: 200 RVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKR 259

Query: 213 VF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           VF G +  R+++TW +++   + +   E+   LF++M      P+  TY   + AC    
Sbjct: 260 VFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAA 319

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG--SVEDAWQIFEFAEELDGVSMTVI 329
               G+  H ++ K  L+  + I +AL+ MY K    S+E A  +F   +  D VS   I
Sbjct: 320 HKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSI 379

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L GF+Q GF E+A++LF  M  +  EID    SAVL        L LG+QIH L +K+ F
Sbjct: 380 LTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGF 439

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN FV + LI MYSKCG +ED+ K F      +S++WNS++ A+A+HG G  AL+L+  
Sbjct: 440 DSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSI 499

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+   V+   VTF+++L ACSHVGLV +G   LKSM   + I PR EHYAC VD+ GRAG
Sbjct: 500 MREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAG 559

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA++ I+ MP +P+ +V + LLGAC   G+ E+    A +L   +P+    Y++++N
Sbjct: 560 YLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSN 619

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y    RW ++A   + M+E  V K  G SWIE++ +VH+F  +D+ HP ++ ++ +L E
Sbjct: 620 MYGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGE 679

Query: 630 LLRLM 634
           L+  M
Sbjct: 680 LMEEM 684



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 220/461 (47%), Gaps = 8/461 (1%)

Query: 91  IWNSLLSFYLKC--DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + N++L  Y KC    +  A KLFD+MP +DTV+WNTM++G++ +G     + F K    
Sbjct: 36  VANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKR 95

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            GF Q D  +F  IL     +    + + +H L+   GYE+ V  G+AL+  Y KC    
Sbjct: 96  RGF-QADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVE 154

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               VF  M VRN ++W A+I G VQ    +    L   M    +     T+   +    
Sbjct: 155 DAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLD 214

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA-EELDGVSMT 327
           G +      Q+H  + K  L+    + +A +  YS+CG +EDA ++F+ A    D V+  
Sbjct: 215 GDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWN 274

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +LV +  +  +E+A  LF++M   G E D    + V+           GK  H+L+IK 
Sbjct: 275 SMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKR 334

Query: 388 DFTSNPFVNNGLINMYSKCGD--LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
               +  + N LI MY K  +  +E ++ +F  M  ++ VSWNS++  F++ G    AL+
Sbjct: 335 GLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALK 394

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M+    E  D  + ++L +CS + ++  G + +  +T            + ++ M 
Sbjct: 395 LFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQ-IHLLTVKTGFDSNDFVASSLIFMY 453

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            + G++ +A    E    K   + W +++ A + HG  ++ 
Sbjct: 454 SKCGIIEDAWKCFED-TTKESSITWNSIMFAYAQHGQGDVA 493



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 147/311 (47%), Gaps = 9/311 (2%)

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKC--GSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           + HC  +  G    + V N ++  Y KC  G  +   K+F EM  ++ +TW  +I+G V+
Sbjct: 20  LTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVE 79

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE---GRQIHGILWKLALQSD 291
           +       +    M       +  T+ S +    G+   C    G+Q+H ++ K+  +  
Sbjct: 80  SGNLGAAWEFLKSMKRRGFQADGYTFGSIL---KGVAHACRHDLGQQVHSLIVKIGYEQS 136

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           +   SAL+DMY+KC  VEDA+ +F+     + VS   ++ GF Q G  + A  L   M K
Sbjct: 137 VYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQK 196

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            G+ ++    + +L +   D    L  Q+H  IIK        + N  +  YS+CG LED
Sbjct: 197 EGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLED 256

Query: 412 SIKVFS-RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           + +VF   +  R+ V+WNSM+ A+  H     A  L+ EM+  G EP   T+  ++ AC 
Sbjct: 257 AKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACF 316

Query: 471 HVGLVNKGMEF 481
                N G  F
Sbjct: 317 AAAHKNYGKSF 327


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 343/608 (56%), Gaps = 24/608 (3%)

Query: 62  LGPSLHASFIKTFEPFDN--------QNV--YNVPNATV-IW----NSLLSFYLKCDQMR 106
           +  S +A  +  F  F N        Q V  Y + NA V +W    N+L++ Y KC+ + 
Sbjct: 348 INASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAID 407

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII--LS 164
           NA  +F  MP +DTVSWN+++SG   N  F+     F      G      + F++I  LS
Sbjct: 408 NARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVP---SKFSVISTLS 464

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           +C      ++ + IH     CG + +V+V NAL+T Y +       +KVF  M   + ++
Sbjct: 465 SCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVS 524

Query: 225 WTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W + I  L  ++    + +K F++M      PN +T+++ + A S L  L  GRQIH ++
Sbjct: 525 WNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALI 584

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEA 342
            K ++  D  IE+ L+  Y KC  +ED   IF   +E  D VS   ++ G+  NG   +A
Sbjct: 585 LKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKA 644

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           M L   M++ G  +D   ++ VL       +L  G ++H+  I++   +   V + L++M
Sbjct: 645 MGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDM 704

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG ++ + + F  M  RN  SWNSMI+ +ARHG+G KAL+L+ +MK  G  P  VTF
Sbjct: 705 YAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTF 764

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + +L ACSHVGLV++G E  KSM EV+ ++PR EH++C+VD++GRAG + +   FI+ MP
Sbjct: 765 VGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMP 824

Query: 523 VKPDVLVWQALLGAC--SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           + P+ L+W+ +LGAC  +   ++E+G+ AA+ L   +P +   Y+L++N+++  G+W++ 
Sbjct: 825 MNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDV 884

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            +A   M+   V KE G SW+ ++  VH FV  D+ HP+ + I+  L E++  M D GYV
Sbjct: 885 EEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYV 944

Query: 641 PNKRFILH 648
           P  ++ L+
Sbjct: 945 PETKYALY 952



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 212/412 (51%), Gaps = 23/412 (5%)

Query: 88  ATVIW-NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           + V W N+L++ +++   + +A KLFD+MP ++ VSW+ +VSG+ +NG  D     F+  
Sbjct: 72  SDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGI 131

Query: 147 LELGFYQLDQASFTIILSACDR--SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           +  G    +  +    L AC      +  +   IH L+    Y  ++ + N L++ Y  C
Sbjct: 132 ISAGLLP-NHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHC 190

Query: 205 GSS-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI----NPNSLT 259
            +S    R+VF E++++   +W ++IS   +        KLF  M          PN  T
Sbjct: 191 SASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYT 250

Query: 260 YLSSV-MACS----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           + S V +ACS    GL  L    Q+   + K +   DL + SAL+  +++ G ++ A  I
Sbjct: 251 FCSLVTVACSLVDCGLTLL---EQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMI 307

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE  ++ + V+M  ++VG A+    EEA ++F +M K  +EI+ +  + +L  F   ++L
Sbjct: 308 FEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNL 366

Query: 375 GLGK----QIHSLIIKSDFTSN-PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
             GK    ++H+ +I++        + N L+N+Y+KC  ++++  +F  M  +++VSWNS
Sbjct: 367 KEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNS 426

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +I+    +    +A+  +  M+  G+ P+  + +S L +C+ +G +  G + 
Sbjct: 427 IISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQI 478



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 185/376 (49%), Gaps = 21/376 (5%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +  +H  +Y  G   +V   N L+  + + G+  S +K+F EM  +N+++W+ ++SG  Q
Sbjct: 58  AHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQ 117

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDL 292
           N + +E   LF  +    + PN     S++ AC   G   L  G +IHG++ K    SD+
Sbjct: 118 NGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDM 177

Query: 293 CIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
            + + LM MYS C  S++DA ++FE  +     S   I+  + + G    A +LF  M +
Sbjct: 178 VLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQR 237

Query: 352 AGIEID--PNMVS----AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
              E++  PN  +      +    VD  L L +Q+ + I KS F  + +V + L++ +++
Sbjct: 238 EATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFAR 297

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G ++ +  +F +M  RN+V+ N ++   AR   G +A ++++EMK + VE    ++  L
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMK-DLVEINASSYAVL 356

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-------ACVVDMVGRAGLLIEARSFI 518
           L A +    + +G    +   EVH    R             +V++  +   +  ARS  
Sbjct: 357 LSAFTEFSNLKEGK---RKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIF 413

Query: 519 ERMPVKPDVLVWQALL 534
           + MP K D + W +++
Sbjct: 414 QLMPSK-DTVSWNSII 428



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 160/318 (50%), Gaps = 40/318 (12%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +  Q+H  ++K  L SD+   + L++++ + G++  A ++F+   + + VS + ++ G+A
Sbjct: 57  DAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYA 116

Query: 335 QNGFEEEAMQLFVKMVKAGI---------------EIDPNMVSAVLGVFGVDTSLGLGKQ 379
           QNG  +EA  LF  ++ AG+               E+ PNM             L LG +
Sbjct: 117 QNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNM-------------LKLGME 163

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           IH LI KS + S+  ++N L++MYS C   ++D+ +VF  +  + S SWNS+I+ + R G
Sbjct: 164 IHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRG 223

Query: 439 NGFKALELYEEMKLEGVE----PTDVTFLSLLH-ACSHVGLVNKGMEFLKSM-TEVHRIS 492
           +   A +L+  M+ E  E    P + TF SL+  ACS   LV+ G+  L+ M   + + S
Sbjct: 224 DAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSS 280

Query: 493 PRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
              + Y  + +V    R GL+  A+   E+M  +  V +   ++G    H   E  K   
Sbjct: 281 FVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFK 340

Query: 551 EKLFLAQPDSPAPYILMA 568
           E   L + ++ +  +L++
Sbjct: 341 EMKDLVEINASSYAVLLS 358


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 304/559 (54%), Gaps = 3/559 (0%)

Query: 79  NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
            + V N P    + NS+L  Y KC  + +A K+FD+M  R+ VSWNT++S +  NG FD 
Sbjct: 37  QRTVKNPPE--FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDK 94

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
           GF  F   LEL            + S  + S L  + K IH      G     +V  A+ 
Sbjct: 95  GFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLE-IGKQIHSHAIRSGLGSNASVNTAIS 153

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y KCG       VF +M  +N + WT ++ G  Q +   + L LF KM    +  +  
Sbjct: 154 NMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEY 213

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
            +   + AC+GL+ L  GRQIHG + KL L+S++ + + L+D Y KC ++E A + FE+ 
Sbjct: 214 VFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWI 273

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            E + VS + ++ G+ Q G  EEA++ F  +    ++I+    +++            G 
Sbjct: 274 SEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGA 333

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q H+  IKS   +     + +I MYS+CG L+ + +VF  +   ++V+W ++IA +A  G
Sbjct: 334 QAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQG 393

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           N  +AL+L+  M+  GV P  VTF+++L ACSH GLV +G ++L+SM+  + ++   +HY
Sbjct: 394 NAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHY 453

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            C+VD+  RAG L EA   I  MP  PD + W+ LLG C  + + E+G+ AAE LF   P
Sbjct: 454 DCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDP 513

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
           +  A YILM N+Y+  G+WKE A   K M E  + KE   SWI ++ +VH F+V DK HP
Sbjct: 514 EDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHP 573

Query: 619 QADTIHGVLAELLRLMIDE 637
           Q + I+  L  L   +I E
Sbjct: 574 QTEEIYSKLEALNDSVIKE 592



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 152/304 (50%), Gaps = 25/304 (8%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           ++P S  Y     AC  +++L +GR  H  + +        +E++++ MY KCGS+ DA 
Sbjct: 8   VSPRS--YKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADAR 65

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGV 370
           ++F+   E + VS   I+  +A+NG  ++   +F  M++  +E  PN  + +  L     
Sbjct: 66  KVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLE--LETKPNGSTYIGFLRSLLN 123

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            + L +GKQIHS  I+S   SN  VN  + NMY KCG LE +  VF +M+ +N+V+W  +
Sbjct: 124 PSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGI 183

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF------LKS 484
           +  + +      AL L+ +M  EGVE  +  F  +L AC+ +  +N G +       L  
Sbjct: 184 MVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGL 243

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            +EV   +P       +VD   +   L  A    E +  +P+ + W AL     I G  +
Sbjct: 244 ESEVSVGTP-------LVDFYVKCSNLESATKAFEWIS-EPNDVSWSAL-----ITGYCQ 290

Query: 545 MGKY 548
           MG++
Sbjct: 291 MGEF 294



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M  AGI + P     +    G   SL  G+  H  + ++      F+ N ++ MY KCG 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L D+ KVF  M  RN VSWN++I+A+A +G   K   ++  M     +P   T++  L +
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 469 CSHVGLVN-KGMEFLKSMTEVHRISPR------AEHYACVVDMVGRAGLLIEARSFIERM 521
                L+N  G+E  K   ++H  + R      A     + +M  + G L  A    E+M
Sbjct: 121 -----LLNPSGLEIGK---QIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKM 172

Query: 522 PVKPDVLVWQALL 534
             K + + W  ++
Sbjct: 173 SEK-NAVAWTGIM 184


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 340/609 (55%), Gaps = 19/609 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           +Y  +S +++  A +G   +G  +HA  +K    F+ + +        + NSL+S   K 
Sbjct: 202 DYYTVSTVIAALANQGAVAIGMQIHALVVKL--GFETERL--------VCNSLISMLSKS 251

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R+A  +FD+M  +D+VSWN+M++G + NG+    F  F  +++L   +   A+F  +
Sbjct: 252 GMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFN-NMQLAGAKPTHATFASV 310

Query: 163 LSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VR 220
           + +C    EL LV +++HC     G      V  AL+ +  KC        +F  M  V+
Sbjct: 311 IKSCASLKELGLV-RVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQ 369

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V++WTA+ISG +QN   ++ + LF  M    + PN  TY S+++       + E   IH
Sbjct: 370 SVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTY-STILTVQHAVFISE---IH 425

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             + K   +    + +AL+D + K G++ DA ++FE  E  D ++ + +L G+AQ G  E
Sbjct: 426 AEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETE 485

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EA ++F ++ + GI+ +     +++      T S+  GKQ H+  IK    +   V++ L
Sbjct: 486 EAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSL 545

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           + +Y+K G++E + ++F R   R+ VSWNSMI+ +A+HG   KALE++EEM+   +E   
Sbjct: 546 VTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDA 605

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +TF+ ++ AC+H GLV KG  +   M   H I+P  EHY+C++D+  RAG+L +A   I 
Sbjct: 606 ITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIIN 665

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP  P   VW+ +L A  +H + E+GK AAEK+   +P   A Y+L++NIY+ +G W E
Sbjct: 666 GMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHE 725

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           +    K M +  V KE G SWIE++ + +SF+  D  HP +D I+  L+EL   + D GY
Sbjct: 726 KVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGY 785

Query: 640 VPNKRFILH 648
            P+  ++ H
Sbjct: 786 QPDTNYVFH 794



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 237/460 (51%), Gaps = 17/460 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y K   +R+  ++FD+M  RD VSWN++++G+  N   D  +  F   +++ 
Sbjct: 139 VGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCL-MQVE 197

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            Y+ D  + + +++A        +   IH LV   G+E E  V N+LI+   K G     
Sbjct: 198 GYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDA 257

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  ++ ++W ++I+G V N    E  + F  M L    P   T+ S + +C+ L
Sbjct: 258 RVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASL 317

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG-VSMTVI 329
           + L   R +H    K  L ++  + +ALM   +KC  ++DA+ +F     +   VS T +
Sbjct: 318 KELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAM 377

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNG  ++A+ LF  M + G++ +    S +L V           +IH+ +IK+++
Sbjct: 378 ISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV----QHAVFISEIHAEVIKTNY 433

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  V   L++ + K G++ D++KVF  +  ++ ++W++M+A +A+ G   +A +++ +
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQ 493

Query: 450 MKLEGVEPTDVTFLSLLHACSH-VGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDM 504
           +  EG++P + TF S+++AC+     V +G +F       + I  R  +  CV    V +
Sbjct: 494 LTREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTL 548

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             + G +  A    +R   + D++ W +++   + HG ++
Sbjct: 549 YAKRGNIESAHEIFKRQKER-DLVSWNSMISGYAQHGQAK 587



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 222/450 (49%), Gaps = 12/450 (2%)

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           R A +LFD  P+RD    N ++  + R  +       F  SL       D  + + +LS 
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFV-SLYRSGLSPDSYTMSCVLSV 111

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  S    V + +HC    CG    ++VGN+L+  Y K G+   GR+VF EM  R+V++W
Sbjct: 112 CAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSW 171

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            ++++G   N+  ++  +LF  M +    P+  T  + + A +   A+  G QIH ++ K
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK 231

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L  +++  + ++L+ M SK G + DA  +F+  E  D VS   ++ G   NG + EA + 
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFET 291

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F  M  AG +      ++V+        LGL + +H   +KS  ++N  V   L+   +K
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTK 351

Query: 406 CGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           C +++D+  +FS M    S VSW +MI+ + ++G+  +A+ L+  M+ EGV+P   T+ +
Sbjct: 352 CKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYST 411

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L     V +     E +K+  E       A     ++D   + G + +A    E +  K
Sbjct: 412 ILTVQHAVFISEIHAEVIKTNYEKSSSVGTA-----LLDAFVKIGNISDAVKVFELIETK 466

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            DV+ W A+L   +  G++E     A K+F
Sbjct: 467 -DVIAWSAMLAGYAQAGETE----EAAKIF 491


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 331/606 (54%), Gaps = 11/606 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V  + +LSI A  G+F  G  LH   I +   FD Q          + N+L++ Y KC
Sbjct: 212 NSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQ----------VANTLVAMYSKC 261

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A KLF+ MP  DTV+WN +++G+++NG  D     F   +  G  + D  +F   
Sbjct: 262 GNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGV-KPDSVTFASF 320

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +   S      K +H  +       +V + +ALI  YFK G     RK+F +  + +V
Sbjct: 321 LPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDV 380

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
              TA+ISG V + L  + +  F  +    +  NSLT  S + AC+ + AL  G+++H  
Sbjct: 381 AVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCH 440

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  L++ + + SA+ DMY+KCG ++ A++ F    + D V    ++  F+QNG  E A
Sbjct: 441 ILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIA 500

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M  +G + D   +S+ L       +L  GK++H  +I++ F+S+ FV + LI+M
Sbjct: 501 IDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDM 560

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG+L  +  VF+ M  +N VSWNS+IAA+  HG   + L+LY EM   G+ P  VTF
Sbjct: 561 YSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTF 620

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L ++ AC H GLV++G+ +   MT  + I  R EHYAC+VD+ GRAG + EA   I+ MP
Sbjct: 621 LVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMP 680

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
             PD  VW  LLGAC +HG+ E+ K A+  L    P +   Y+L++N+++ +G W    K
Sbjct: 681 FTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLK 740

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               MKE GV K  G SWI++    H F   D  HP++  I+ +L  LL  +  +GYVP 
Sbjct: 741 VRSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEIYLILKSLLLELRKQGYVPQ 800

Query: 643 KRFILH 648
               LH
Sbjct: 801 PYLPLH 806



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 237/449 (52%), Gaps = 3/449 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++L+  Y     +R+A ++FD++P+RDT+ WN M+ G++++G+FD   G F   +   + 
Sbjct: 151 SALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCE-MRTSYS 209

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            ++  ++T ILS C           +H LV   G+E +  V N L+  Y KCG+    RK
Sbjct: 210 MVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARK 269

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M   + +TW  +I+G VQN   +E   LF  M    + P+S+T+ S + +     +
Sbjct: 270 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 329

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L   +++H  + +  +  D+ ++SAL+D+Y K G VE A +IF+    +D    T ++ G
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISG 389

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  +G   +A+  F  +++ G+  +   +++VL       +L  GK++H  I+K    + 
Sbjct: 390 YVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENI 449

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + + +MY+KCG L+ + + F RM+ R+SV WNSMI++F+++G    A++L+ +M +
Sbjct: 450 VNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGM 509

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G +   V+  S L A +++  +  G E +      +  S      + ++DM  + G L 
Sbjct: 510 SGAKFDSVSLSSALSAAANLPALYYGKE-MHGYVIRNAFSSDTFVASTLIDMYSKCGNLA 568

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            A      M  K +V  W +++ A   HG
Sbjct: 569 LAWCVFNLMDGKNEV-SWNSIIAAYGNHG 596



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 220/455 (48%), Gaps = 11/455 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +L  Y+ C + R+A  LF ++ +R  + WN M+ G    G FD    F+ + L       
Sbjct: 52  VLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV-SP 110

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D+ +F  ++ AC       +  ++H      G+  ++  G+ALI  Y   G     R+VF
Sbjct: 111 DKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVF 170

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E+ +R+ I W  ++ G V++  ++  +  F +M       NS+TY   +  C+     C
Sbjct: 171 DELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFC 230

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+HG++     + D  + + L+ MYSKCG++  A ++F    + D V+   ++ G+ 
Sbjct: 231 AGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYV 290

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QNGF +EA  LF  M+ AG++ D    ++ L       SL   K++HS I++     + +
Sbjct: 291 QNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVY 350

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + + LI++Y K GD+E + K+F +    +     +MI+ +  HG    A+  +  +  EG
Sbjct: 351 LKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEG 410

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY----ACVVDMVGRAGL 510
           +    +T  S+L AC+ V  +  G E        H +  R E+     + + DM  + G 
Sbjct: 411 MVTNSLTMASVLPACAAVAALKPGKEL-----HCHILKKRLENIVNVGSAITDMYAKCGR 465

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           L  A  F  RM  + D + W +++ + S +G  E+
Sbjct: 466 LDLAYEFFRRMSDR-DSVCWNSMISSFSQNGKPEI 499



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 180/380 (47%), Gaps = 2/380 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +  AC  + +   ++ +H  V + G  +     + ++  Y  CG       +F E+ +R 
Sbjct: 17  LFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRY 76

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            + W  +I GL     ++  L  + KM    ++P+  T+   + AC GL  +     +H 
Sbjct: 77  ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHD 136

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
               L    DL   SAL+ +Y+  G + DA ++F+     D +   V+L G+ ++G  + 
Sbjct: 137 TARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDN 196

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+  F +M  +   ++    + +L +     +   G Q+H L+I S F  +P V N L+ 
Sbjct: 197 AIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVA 256

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG+L  + K+F+ M   ++V+WN +IA + ++G   +A  L+  M   GV+P  VT
Sbjct: 257 MYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVT 316

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S L +    G +    E + S    HR+       + ++D+  + G +  AR   ++ 
Sbjct: 317 FASFLPSILESGSLRHCKE-VHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQ- 374

Query: 522 PVKPDVLVWQALLGACSIHG 541
            +  DV V  A++    +HG
Sbjct: 375 NILVDVAVCTAMISGYVLHG 394


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/588 (34%), Positives = 325/588 (55%), Gaps = 15/588 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  I+T   +D ++V+         N+L+  Y K   +R A  +F  +P  D VS
Sbjct: 221 GRKVHAMVIRT--GYD-KDVFTA-------NALVDMYSKLGDIRMAAVVFGKVPETDVVS 270

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHC 180
           WN  +SG + +G            L++    L    FT+  IL AC  S    + + IH 
Sbjct: 271 WNAFISGCVLHGHDQHALELL---LQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHG 327

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
            +     + +  +   L+  Y K G     +KVF  +  R+++ W A+ISG      + E
Sbjct: 328 FMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAE 387

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L LF +M     + N  T  + + + + L+A+ + RQ+H +  KL   SD  + + L+D
Sbjct: 388 ALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLID 447

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
            Y KC  +  A+++FE     D ++ T ++   +Q    E+A++LF++M++ G++ DP +
Sbjct: 448 SYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFV 507

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +S++L      ++   GKQ+H+ +IK  F S+ F  N L+  Y+KCG +ED+   FS + 
Sbjct: 508 LSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLP 567

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +  VSW++MI   A+HG+G +AL+++  M  E + P  +T  S+L AC+H GLV++   
Sbjct: 568 EKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKR 627

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  SM E+  I    EHYAC++D++GRAG L +A   +  MP + +  VW ALL A  +H
Sbjct: 628 YFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVH 687

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            D E+G+ AAEKLF+ +P+    ++L+AN Y+ +G W + AK  K MK+  V KE  +SW
Sbjct: 688 RDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSW 747

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +E++ +VH+F+V DK HP+A  I+  L EL  LM   GYVPN    LH
Sbjct: 748 VELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLH 795



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 251/511 (49%), Gaps = 42/511 (8%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN L+S Y+K D+  +AVK+F +           MV G ++  EF            
Sbjct: 167 TVSWNGLMSAYVKNDRCSHAVKVFGE-----------MVWGGVQPNEF------------ 203

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                     F+ +++AC  S      + +H +V   GY+++V   NAL+  Y K G   
Sbjct: 204 ---------GFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIR 254

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               VFG++   +V++W A ISG V +   +  L+L ++M    + PN  T  S + AC+
Sbjct: 255 MAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACA 314

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  A   GRQIHG + K    SD  I   L+DMY+K G ++DA ++F++  + D V    
Sbjct: 315 GSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNA 374

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G +      EA+ LF +M K G +++   ++AVL       ++   +Q+H+L  K  
Sbjct: 375 LISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLG 434

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S+  V NGLI+ Y KC  L  + +VF +    + +++ SMI A ++  +G  A++L+ 
Sbjct: 435 FLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFM 494

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM  +G++P      SLL+AC+ +    +G +    + +   +S      A +V    + 
Sbjct: 495 EMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNA-LVYTYAKC 553

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILM 567
           G + +A      +P K  V+ W A++G  + HG    GK A +       +  +P +I M
Sbjct: 554 GSIEDADLAFSGLPEK-GVVSWSAMIGGLAQHGH---GKRALDVFHRMVDEHISPNHITM 609

Query: 568 ANIY-SC--SGRWKERAKAIKRMKEM-GVDK 594
            ++  +C  +G   E  +    MKEM G+++
Sbjct: 610 TSVLCACNHAGLVDEAKRYFNSMKEMFGIER 640



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 133/500 (26%), Positives = 243/500 (48%), Gaps = 34/500 (6%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            V  N LLSFY KC    +A ++FD++P    VSW+++V+ +  N       G F RS+ 
Sbjct: 37  AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAF-RSMR 95

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               + ++    ++L     +        +H L    G   ++ V NAL+  Y   G   
Sbjct: 96  SCSVRCNEFVLPVVLKCAPDAGFG---TQLHALAMATGLGGDIFVANALVAMYGGFGFVD 152

Query: 209 SGRKVFGEMRV-RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             R VF E    RN ++W  ++S  V+N      +K+F +M  G + PN   +   V AC
Sbjct: 153 EARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNAC 212

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +G + L  GR++H ++ +     D+   +AL+DMYSK G +  A  +F    E D VS  
Sbjct: 213 TGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWN 272

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             + G   +G ++ A++L ++M  +G+  +   +S++L       +  LG+QIH  ++K+
Sbjct: 273 AFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKA 332

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           +  S+ ++  GL++MY+K G L+D+ KVF  +  R+ V WN++I+  +      +AL L+
Sbjct: 333 NADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLF 392

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EG +    T  ++L          K    L+++++  ++   AE    + D    
Sbjct: 393 CRMRKEGFDVNRTTLAAVL----------KSTASLEAISDTRQVHALAEKLGFLSDSHVV 442

Query: 508 AGLL-----IEARSFIERMPVKP---DVLVWQALLGACSI--HGDSEMGKYAAEKLF--- 554
            GL+      +  ++  R+  K    D++ + +++ A S   HG+       A KLF   
Sbjct: 443 NGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGED------AIKLFMEM 496

Query: 555 LAQPDSPAPYILMANIYSCS 574
           L +   P P++L + + +C+
Sbjct: 497 LRKGLDPDPFVLSSLLNACA 516



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 191/402 (47%), Gaps = 23/402 (5%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S +L   A  G F+LG  +H   +K     DN   +           L+  Y K 
Sbjct: 302 NVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG----------LVDMYAKH 351

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +A K+FD +P RD V WN ++SG     +       F R  + GF  +++ +   +
Sbjct: 352 GLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGF-DVNRTTLAAV 410

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +    E    ++ +H L    G+  +  V N LI SY+KC   +   +VF +    ++
Sbjct: 411 LKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDI 470

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           I +T++I+ L Q    E+ +KLF++M    ++P+     S + AC+ L A  +G+Q+H  
Sbjct: 471 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           L K    SD+   +AL+  Y+KCGS+EDA   F    E   VS + ++ G AQ+G  + A
Sbjct: 531 LIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRA 590

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDF----TSNPFVN 396
           + +F +MV     I PN ++ +  V       GL  +       +K  F    T   +  
Sbjct: 591 LDVFHRMVDE--HISPNHIT-MTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYA- 646

Query: 397 NGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
             +I++  + G L+D++++ + M    N+  W +++AA   H
Sbjct: 647 -CMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVH 687


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 326/566 (57%), Gaps = 11/566 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + N L++ Y KC  + +A  +F  M  +D+VSWN+M++G  +N  F+     +    + 
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 150 GFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           G   L  ++F +I  LS+C      L+ +  H      G + +V+V N L+  Y +    
Sbjct: 199 G---LMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRL 255

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           +  +KVF  M  R+ ++W  VI  L  +     E +++F++M     +PN +T+++ +  
Sbjct: 256 AECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLAT 315

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVS 325
            S L       QIH ++ K  ++ D  IE+AL+  Y K G +E+  +IF   +E  D VS
Sbjct: 316 VSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVS 375

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G+  N    +AM L   M++ G  +D    + VL       +L  G ++H+  I
Sbjct: 376 WNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAI 435

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           ++   S+  + + L++MYSKCG ++ + + F+ M  RN  SWNSMI+ +ARHG+G  AL 
Sbjct: 436 RACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALR 495

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  MKL G  P  +TF+ +L ACSH+GLV++G E+ KSMTEV+ + PR EHY+C+VD++
Sbjct: 496 LFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLL 555

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPA 562
           GRAG L +  +FI +MP+KP++L+W+ +LGAC   G+   +E+G+ AAE LF   P +  
Sbjct: 556 GRAGELDKIENFINKMPIKPNILIWRTVLGAC-CRGNGRKTELGRRAAEMLFNMDPQNAV 614

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+L++N+Y+  G+W++ A+  + M+E  V KE G SW+ ++  VH FV  D  HP+   
Sbjct: 615 NYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGL 674

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  L EL + + D GYVP  +F L+
Sbjct: 675 IYAKLKELDKKIRDAGYVPQIKFALY 700



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/481 (30%), Positives = 251/481 (52%), Gaps = 25/481 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y++     +A KLFD+MP R+ V+W  ++SG+ +NG  +   G  K  +  GF 
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 153 QLDQASFTIILSACDRSEL-SLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSG 210
             ++ +F   + AC  S L     + +H      G  + +V VGN LI  Y KCG     
Sbjct: 99  P-NRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHA 157

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VFG M  ++ ++W ++I+GL QN+ +E+ +K +  M    + P++   +S++ +C+ L
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             +  G+Q HG   KL L  D+ + + L+ +Y++   + +  ++F +  E D VS   ++
Sbjct: 218 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVI 277

Query: 331 VGFAQNGFE-EEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKS 387
              A +G    EA+++F++M++AG    PN V+ +  L      ++  L  QIH+LI+K 
Sbjct: 278 GALADSGASVSEAIEVFLEMMRAGWS--PNRVTFINLLATVSSLSTSKLSHQIHALILKY 335

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALEL 446
           +   +  + N L+  Y K G++E+  ++FSRM+  R+ VSWNSMI+ +  +    KA++L
Sbjct: 336 NVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDL 395

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----- 501
              M   G      TF ++L AC+ V  +  GM       EVH  + RA   + V     
Sbjct: 396 VWLMMQRGQRLDCFTFATVLSACATVATLECGM-------EVHACAIRACLESDVVIGSA 448

Query: 502 -VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG--ACSIHGDSEMGKYAAEKLFLAQP 558
            VDM  + G +  A  F   MPV+ ++  W +++   A   HGD+ +  +   KL    P
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLP 507

Query: 559 D 559
           D
Sbjct: 508 D 508



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 181/366 (49%), Gaps = 10/366 (2%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           + + H  V   G++ ++ + N LI  Y + G   S RK+F EM  RN +TW  +ISG  Q
Sbjct: 19  ANLFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQ 78

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-GLQALCEGRQIHGILWKLALQ-SDL 292
           N + E+   +  +M      PN   + S++ AC   +    +GRQ+HG   +  L  + +
Sbjct: 79  NGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKV 138

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + + L++MY+KCG ++ A  +F    + D VS   ++ G  QN   E+A++ +  M K 
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 353 GIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           G+ +  N   A++       SLG   LG+Q H   IK     +  V+N L+ +Y++   L
Sbjct: 199 GL-MPSNF--ALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRL 255

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF-KALELYEEMKLEGVEPTDVTFLSLLHA 468
            +  KVFS M  R+ VSWN++I A A  G    +A+E++ EM   G  P  VTF++LL  
Sbjct: 256 AECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLAT 315

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
            S +   +K    + ++   + +         ++   G++G +        RM  + D +
Sbjct: 316 VSSLS-TSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEV 374

Query: 529 VWQALL 534
            W +++
Sbjct: 375 SWNSMI 380



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 114/236 (48%), Gaps = 14/236 (5%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V    LL+  +      L   +HA  +K          YNV +   I N+LL+ Y K 
Sbjct: 305 NRVTFINLLATVSSLSTSKLSHQIHALILK----------YNVKDDNAIENALLACYGKS 354

Query: 103 DQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
            +M N  ++F  M   RD VSWN+M+SG++ N             ++ G  +LD  +F  
Sbjct: 355 GEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRG-QRLDCFTFAT 413

Query: 162 ILSACDRSELSLVSKMIH-CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           +LSAC           +H C +  C  E +V +G+AL+  Y KCG      + F  M VR
Sbjct: 414 VLSACATVATLECGMEVHACAIRAC-LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVR 472

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           N+ +W ++ISG  ++   +  L+LF +M L    P+ +T++  + ACS +  + EG
Sbjct: 473 NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEG 528


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 324/608 (53%), Gaps = 16/608 (2%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++  +L +  ++G    G  +H   +K+    +           +  N L+  Y KC + 
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLN----------LITSNYLIDMYCKCREP 57

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
             A K+FD MP R+ VSW+ ++SG + NG+       F      G Y  ++ +F+  L A
Sbjct: 58  LMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKA 116

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C           IH      G+E  V VGN+L+  Y KCG  +   KVF  +  R++I+W
Sbjct: 117 CGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISW 176

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLIN--PNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            A+I+G V      + L  F  M    I   P+  T  S + ACS    +  G+QIHG L
Sbjct: 177 NAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFL 236

Query: 284 WKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +      S   I  +L+D+Y KCG +  A + F+  +E   +S + +++G+AQ G   E
Sbjct: 237 VRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVE 296

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           AM LF ++ +   +ID   +S+++GVF     L  GKQ+ +L +K        V N +++
Sbjct: 297 AMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVD 356

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY KCG ++++ K F+ M  ++ +SW  +I  + +HG G K++ ++ EM    +EP +V 
Sbjct: 357 MYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVC 416

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           +L++L ACSH G++ +G E    + E H I PR EHYACVVD++GRAG L EA+  I+ M
Sbjct: 417 YLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM 476

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+V +WQ LL  C +HGD E+GK   + L      +PA Y++M+N+Y  +G W E+ 
Sbjct: 477 PIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQG 536

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYV 640
            A +     G+ KE G+SW+EIE++VH F   +  HP    I   L E  R + +E GYV
Sbjct: 537 NARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYV 596

Query: 641 PNKRFILH 648
              +  LH
Sbjct: 597 YGLKHELH 604



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 154/314 (49%), Gaps = 7/314 (2%)

Query: 255 PNSLTYLSSVMACSGLQALC-EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           PN    L S++     + L  +G Q+H  L K     +L   + L+DMY KC     A++
Sbjct: 3   PNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F+   E + VS + ++ G   NG  + ++ LF +M + GI  +    S  L   G+  +
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G QIH   +K  F     V N L++MYSKCG + ++ KVF R+  R+ +SWN+MIA 
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182

Query: 434 FARHGNGFKALELYEEMKLEGVE--PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           F   G G KAL+ +  M+   ++  P + T  SLL ACS  G++  G +    +      
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242

Query: 492 SP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD--SEMGKY 548
            P  A     +VD+  + G L  AR   +++  K  ++ W +L+   +  G+    MG +
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT-MISWSSLILGYAQEGEFVEAMGLF 301

Query: 549 AAEKLFLAQPDSPA 562
              +   +Q DS A
Sbjct: 302 KRLQELNSQIDSFA 315


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 312/563 (55%), Gaps = 15/563 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y+K  ++  A  +F+ MP  D VSWN ++SG + NG          R++EL   
Sbjct: 241 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD-------HRAIEL-LL 292

Query: 153 QLDQASF-------TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           Q+  +         + IL AC  +    + + IH  +     + +  +G  L+  Y K  
Sbjct: 293 QMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 KVF  M  R++I W A+ISG      ++E   +F  +    +  N  T  + + 
Sbjct: 353 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 412

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + + L+A    RQ+H +  K+    D  + + L+D Y KC  + DA ++FE     D ++
Sbjct: 413 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 472

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           +T ++   +Q    E A++LF++M++ G+E DP ++S++L      ++   GKQ+H+ +I
Sbjct: 473 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S+ F  N L+  Y+KCG +ED+   FS +  R  VSW++MI   A+HG+G +ALE
Sbjct: 533 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 592

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M  EG+ P  +T  S+L AC+H GLV++   +  SM E+  I    EHY+C++D++
Sbjct: 593 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 652

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A   +  MP + +  VW ALLGA  +H D E+GK AAEKLF+ +P+    ++
Sbjct: 653 GRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHV 712

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L+AN Y+ SG W E AK  K MK+  + KE  +SW+E++ +VH+F+V DK HP    I+ 
Sbjct: 713 LLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYS 772

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L EL  LM   GY+PN    LH
Sbjct: 773 KLDELGDLMSKAGYIPNVDVDLH 795



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 156/594 (26%), Positives = 274/594 (46%), Gaps = 73/594 (12%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+SFY KC +   A ++FD++P    VSW+++V+ +  NG          RS    F+
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNG--------LPRSAIQAFH 92

Query: 153 QL-------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +       ++ +  ++L     ++L      +H +    G+  +V V NAL+  Y   G
Sbjct: 93  GMRAEGVCCNEFALPVVLKCVPDAQLG---AQVHAMAMATGFGSDVFVANALVAMYGGFG 149

Query: 206 SSSSGRKVFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                R+VF E    RN ++W  ++S  V+N    + +++F +M    I P    +   V
Sbjct: 150 FMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVV 209

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+G + +  GRQ+H ++ ++  + D+   +AL+DMY K G V+ A  IFE   + D V
Sbjct: 210 NACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVV 269

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G   NG +  A++L ++M  +G+  +  M+S++L       +  LG+QIH  +
Sbjct: 270 SWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFM 329

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK++  S+ ++  GL++MY+K   L+D++KVF  M+ R+ + WN++I+  +  G   +A 
Sbjct: 330 IKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAF 389

Query: 445 ELYEEMKLEGVEPTDVTFLSL------LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            ++  ++ EG+     T  ++      L A S    V+   E +  + + H ++   + Y
Sbjct: 390 SIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSY 449

Query: 499 ---ACVVDMVG-----RAGLLIEARSFIE-------------------RMPVKPDVLVWQ 531
              +C+ D +       +G +I   S I                    R  ++PD  V  
Sbjct: 450 WKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLS 509

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           +LL AC+     E GK     L   Q   D+ A   L+     C G  ++   A   + E
Sbjct: 510 SLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKC-GSIEDAELAFSSLPE 568

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA-ELLRLMIDEGYVPN 642
            GV     +SW  +            +   A   HG  A EL   M+DEG  PN
Sbjct: 569 RGV-----VSWSAM------------IGGLAQHGHGKRALELFGRMVDEGINPN 605



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 195/408 (47%), Gaps = 23/408 (5%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S  ++ N   +S +L   A  G F LG  +H   IK           N  +   I   L+
Sbjct: 296 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA----------NADSDDYIGVGLV 345

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y K   + +A+K+FD M  RD + WN ++SG    G  D  F  F    + G   +++
Sbjct: 346 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGL-GVNR 404

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +   +L +    E +  ++ +H L    G+  +  V N LI SY+KC   S   +VF E
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 464

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
               ++I  T++I+ L Q    E  +KLF++M    + P+     S + AC+ L A  +G
Sbjct: 465 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+H  L K    SD    +AL+  Y+KCGS+EDA   F    E   VS + ++ G AQ+
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQH 584

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----GKQIHSL--IIKSDFT 390
           G  + A++LF +MV  G  I+PN ++ +  V       GL     +  +S+  +   D T
Sbjct: 585 GHGKRALELFGRMVDEG--INPNHIT-MTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
              +  + +I++  + G L+D++++ + M    N+  W +++ A   H
Sbjct: 642 EEHY--SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVH 687



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 153/315 (48%), Gaps = 27/315 (8%)

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           QAL  G  +H  L K    + L   + L+  YSKC     A ++F+   +   VS + ++
Sbjct: 18  QALLPGAHLHANLLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLV 75

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             ++ NG    A+Q F  M   G+  +   +  VL          LG Q+H++ + + F 
Sbjct: 76  TAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCV---PDAQLGAQVHAMAMATGFG 132

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEE 449
           S+ FV N L+ MY   G ++D+ +VF    + RN+VSWN +++A+ ++     A++++ E
Sbjct: 133 SDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGE 192

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VD 503
           M   G++PT+  F  +++AC+       G   + +  +VH +  R  +   V      VD
Sbjct: 193 MVWSGIQPTEFGFSCVVNACT-------GSRNIDAGRQVHAMVVRMGYEKDVFTANALVD 245

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--- 560
           M  + G +  A    E+MP   DV+ W AL+  C ++G      + A +L L    S   
Sbjct: 246 MYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHD----HRAIELLLQMKSSGLV 300

Query: 561 PAPYILMANIYSCSG 575
           P  ++L + + +C+G
Sbjct: 301 PNVFMLSSILKACAG 315


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 209/599 (34%), Positives = 325/599 (54%), Gaps = 46/599 (7%)

Query: 90  VIWNSLLSFYLKC-DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF----K 144
           V+ N L+S Y  C D   +A  +FD + +R+++SWN+++S + R G+    +  F    K
Sbjct: 238 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 297

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFK 203
             L   F   D  S   +L    R       + +H  V   G  + +V +GN L+  Y K
Sbjct: 298 EGLGFSFKPNDAFSEFSVLEEGRRK-----GREVHAHVIRTGLNDNKVAIGNGLVNMYAK 352

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE------------------------ 239
            G+ +    VF  M  ++ ++W ++ISGL QN+  E                        
Sbjct: 353 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGAL 412

Query: 240 --------EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
                   + +K F++M  G    + +T+++ + A S L       QIH ++ K  L  D
Sbjct: 413 SDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDD 472

Query: 292 LCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
             I +AL+  Y KCG + +  +IF   +E  D VS   ++ G+  N    +AM L   M+
Sbjct: 473 TAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMM 532

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           + G  +D    + +L       +L  G ++H+  I++   S+  V + L++MYSKCG ++
Sbjct: 533 QKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRID 592

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + + F  M  RN  SWNSMI+ +ARHG+G KAL+L+  M L+G  P  VTF+ +L ACS
Sbjct: 593 YASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACS 652

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           HVG V +G E  KSM+EV+R+SPR EH++C+VD++GRAG L E   FI  MP+KP+VL+W
Sbjct: 653 HVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIW 712

Query: 531 QALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           + +LGAC      ++E+G+ AAE L   +P +   Y+L+AN+Y+   +W++ AKA   MK
Sbjct: 713 RTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMK 772

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           E  V KE G SW+ ++  VH FV  DK+HP+ D I+  L EL R M D GY+P  ++ L
Sbjct: 773 EAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYAL 831



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 152/546 (27%), Positives = 257/546 (47%), Gaps = 61/546 (11%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y++   + +A KLFD+M  R+ V+W  ++SG+ +NG+ D     F+  +  GF 
Sbjct: 138 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 197

Query: 153 QLDQASFTIILSACDRSELS--LVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-GSSSS 209
             +  +F   L AC  S  S   +   IH L+    Y  +V V N LI+ Y  C  S++ 
Sbjct: 198 P-NHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSAND 256

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGL-INPNSLTYLSSVM 265
            R VF  + +RN I+W ++IS   +         LF  M    LG    PN      SV+
Sbjct: 257 ARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVL 316

Query: 266 ACSGLQALCEGRQIHGILWKLALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
                +   +GR++H  + +  L  + + I + L++MY+K G++ DA  +FE   E D V
Sbjct: 317 E----EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 372

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKM-----------VKAGIEIDPNMVSAV--------- 364
           S   ++ G  QN   E+A ++F  M           + A  + + ++  AV         
Sbjct: 373 SWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 432

Query: 365 ---------LGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
                    + +    +SL L     QIH+L++K   + +  + N L++ Y KCG++ + 
Sbjct: 433 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 492

Query: 413 IKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
            K+F+RM+  R+ VSWNSMI+ +  +    KA++L   M  +G      TF ++L AC+ 
Sbjct: 493 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACAS 552

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKP 525
           V  + +GM       EVH    RA   + V      VDM  + G +  A  F E MP++ 
Sbjct: 553 VATLERGM-------EVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR- 604

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFL-AQPDSPAPYILMANIYSCSGRWKERAKAI 584
           +V  W +++   + HG  E       ++ L  QP     ++ + +  S  G  +E  +  
Sbjct: 605 NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHF 664

Query: 585 KRMKEM 590
           K M E+
Sbjct: 665 KSMSEV 670



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 199/391 (50%), Gaps = 15/391 (3%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE--FDMGFGF 142
           V   +V WNSL+S   + +   +A ++F  MP  D VSWN+++ G L + E        +
Sbjct: 367 VEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVI-GALSDSEASVSQAVKY 425

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F + +  G + L + +F  ILSA     L  VS  IH LV      ++  +GNAL++ Y 
Sbjct: 426 FLQMMR-GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYG 484

Query: 203 KCGSSSSGRKVFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
           KCG  +   K+F  M   R+ ++W ++ISG + N+L  + + L   M       +S T+ 
Sbjct: 485 KCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFA 544

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           + + AC+ +  L  G ++H    +  L+SD+ + SAL+DMYSKCG ++ A + FE     
Sbjct: 545 TILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 604

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-- 379
           +  S   ++ G+A++G  E+A++LF +M+  G    P+ V+ V GV    + +G  ++  
Sbjct: 605 NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP--PDHVTFV-GVLSACSHVGFVEEGF 661

Query: 380 IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFAR 436
            H   +   +  +P V +   ++++  + G L++     + M  + N + W +++ A  R
Sbjct: 662 EHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCR 721

Query: 437 -HGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
            +G   +      EM LE +EP +     LL
Sbjct: 722 ANGRNTELGRRAAEMLLE-LEPQNAVNYVLL 751



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+   + + N LI  Y + G   S +K+F EM  RN++TW  +ISG  QN   +E    F
Sbjct: 129 GFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARF 188

Query: 246 VKMHLGLINPNSLTYLSSVMAC--SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
             M      PN   + S++ AC  SG      G QIHG++ K    SD+ + + L+ MY 
Sbjct: 189 RDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 248

Query: 304 KC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI--EIDPNM 360
            C  S  DA  +F+     + +S   I+  +++ G    A  LF  M K G+     PN 
Sbjct: 249 SCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND 308

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRM 419
             +   V  ++     G+++H+ +I++    N   + NGL+NMY+K G + D+  VF  M
Sbjct: 309 AFSEFSV--LEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELM 366

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEM 450
             ++SVSWNS+I+   ++     A E++  M
Sbjct: 367 VEKDSVSWNSLISGLDQNECSEDAAEMFSLM 397



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 4/196 (2%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFG 141
           Y + + T I N+LLS Y KC +M    K+F  M   RD VSWN+M+SG++ N        
Sbjct: 467 YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMD 526

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH-CLVYLCGYEEEVTVGNALITS 200
                ++ G  +LD  +F  ILSAC           +H C +  C  E +V VG+AL+  
Sbjct: 527 LVWFMMQKG-QRLDSFTFATILSACASVATLERGMEVHACGIRAC-LESDVVVGSALVDM 584

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCG      + F  M +RNV +W ++ISG  ++   E+ LKLF +M L    P+ +T+
Sbjct: 585 YSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTF 644

Query: 261 LSSVMACSGLQALCEG 276
           +  + ACS +  + EG
Sbjct: 645 VGVLSACSHVGFVEEG 660



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 130/268 (48%), Gaps = 14/268 (5%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           E R++H    K     +L + + L+++Y + G +  A ++F+     + V+   ++ G+ 
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLIIKSDFTSN 392
           QNG  +EA   F  MV+AG   +     + L         G  LG QIH LI K+ + S+
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 393 PFVNNGLINMYSKCGD-LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             V N LI+MY  C D   D+  VF  +  RNS+SWNS+I+ ++R G+   A +L+  M+
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 452 LEGV----EPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            EG+    +P D  +  S+L          KG E    +        +      +V+M  
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLEEGRR-----KGREVHAHVIRTGLNDNKVAIGNGLVNMYA 351

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++G + +A S  E M V+ D + W +L+
Sbjct: 352 KSGAIADACSVFELM-VEKDSVSWNSLI 378


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 187/501 (37%), Positives = 299/501 (59%), Gaps = 1/501 (0%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           ++ G  + D+  +  +L  C +       K++H  V    ++ ++ + N+L+  Y +CGS
Sbjct: 65  IDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGS 124

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               R++F EM  R++++WT++I+G  QN    + L LF +M      PN  T  S V  
Sbjct: 125 LEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKC 184

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  + +   GRQIH   WK    S++ + S+L+DMY++CG + +A  +F+     + VS 
Sbjct: 185 CGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSW 244

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+A+ G  EEA+ LFV+M + G        SA+L        L  GK +H+ ++K
Sbjct: 245 NALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMK 304

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S      +V N L++MY+K G + D+ KVF ++   + VS NSM+  +A+HG G +A + 
Sbjct: 305 SSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQ 364

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++EM   G+EP D+TFLS+L ACSH  L+++G  +   M + + I P+  HYA +VD++G
Sbjct: 365 FDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLG 423

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGLL +A+SFIE MP++P V +W ALLGA  +H ++EMG YAA+++F   P  P  + L
Sbjct: 424 RAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTL 483

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +ANIY+ +GRW++ AK  K MK+ GV KE   SW+E+E  VH FV +D  HPQ + IH +
Sbjct: 484 LANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKM 543

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
             +L + + + GYVP+   +L
Sbjct: 544 WEKLNQKIKEIGYVPDTSHVL 564



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 181/315 (57%), Gaps = 9/315 (2%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           GL +   +  G + P+   Y + +  C+ L  L EG+ +H  +     + DL I+++L+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY++CGS+E A ++F+     D VS T ++ G+AQN    +A+ LF +M+  G E +   
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFT 177

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +S+++   G   S   G+QIH+   K    SN FV + L++MY++CG L +++ VF ++ 
Sbjct: 178 LSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLG 237

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +N VSWN++IA +AR G G +AL L+  M+ EG  PT+ T+ +LL +CS +G + +G +
Sbjct: 238 CKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQG-K 296

Query: 481 FLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           +L +   + + S +   Y    ++ M  ++G + +A    +++ VK DV+   ++L   +
Sbjct: 297 WLHA--HLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKL-VKVDVVSCNSMLIGYA 353

Query: 539 IHGDSEMGKYAAEKL 553
            HG   +GK AA++ 
Sbjct: 354 QHG---LGKEAAQQF 365



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 191/390 (48%), Gaps = 9/390 (2%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           N  +  VI NSLL  Y +C  +  A +LFD+MP RD VSW +M++G+ +N         F
Sbjct: 104 NFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLF 163

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            R L  G  + ++ + + ++  C         + IH   +  G    V VG++L+  Y +
Sbjct: 164 PRMLSDG-AEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYAR 222

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG       VF ++  +N ++W A+I+G  +    EE L LFV+M      P   TY + 
Sbjct: 223 CGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSAL 282

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + +CS +  L +G+ +H  L K + +    + + L+ MY+K GS+ DA ++F+   ++D 
Sbjct: 283 LSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDV 342

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   +L+G+AQ+G  +EA Q F +M++ GIE +     +VL        L  GK    L
Sbjct: 343 VSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGL 402

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN--- 439
           + K +          ++++  + G L+ +      M    +V+ W +++ A   H N   
Sbjct: 403 MRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEM 462

Query: 440 -GFKALELYEEMKLEGVEPTDVTFLSLLHA 468
             + A  ++E   L+   P   T L+ ++A
Sbjct: 463 GAYAAQRVFE---LDPSYPGTHTLLANIYA 489



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 161/373 (43%), Gaps = 46/373 (12%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S L+        ++ G  +HA   K          Y   +   + +SL+  Y +C
Sbjct: 174 NEFTLSSLVKCCGYMASYNCGRQIHACCWK----------YGCHSNVFVGSSLVDMYARC 223

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A+ +FD +  ++ VSWN +++G+ R GE +     F R    G Y+  + +++ +
Sbjct: 224 GYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREG-YRPTEFTYSAL 282

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LS+C         K +H  +     +    VGN L+  Y K GS     KVF ++   +V
Sbjct: 283 LSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDV 342

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++  +++ G  Q+ L +E  + F +M    I PN +T+LS + ACS  + L EG+   G+
Sbjct: 343 VSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGL 402

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  ++  +   + ++D+  + G ++   Q   F EE+  +  TV + G          
Sbjct: 403 MRKYNIEPKVSHYATIVDLLGRAGLLD---QAKSFIEEMP-IEPTVAIWG---------- 448

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
                               A+LG   +  +  +G      + + D  S P  +  L N+
Sbjct: 449 --------------------ALLGASKMHKNTEMGAYAAQRVFELD-PSYPGTHTLLANI 487

Query: 403 YSKCGDLEDSIKV 415
           Y+  G  ED  KV
Sbjct: 488 YASAGRWEDVAKV 500


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/558 (34%), Positives = 312/558 (55%), Gaps = 3/558 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KCD+  +A+ +F  +  ++  SW  M++ F  N +FD  + FF+  L  G  
Sbjct: 14  NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGI- 72

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              +   +I LSAC  +    + + I   +   G EEE  V  AL++ Y K G  +    
Sbjct: 73  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAAS 132

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R+V+ W+A+++   +N    E L LF +M L  + PN +T +S + AC+ L  
Sbjct: 133 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 192

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G  +H  +    +QS + + +AL+++Y KCG +E A + F    E + V+ + I   
Sbjct: 193 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAA 252

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFT 390
           +A+N    +A+++  +M   G+  +     +VL       +L  G++IH  I  +     
Sbjct: 253 YARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLE 312

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ +V   L+NMYSKCG+L  +  +F ++A  + V WNS+IA  A+HG   KALEL+E M
Sbjct: 313 SDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERM 372

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +LEG++PT +TF S+L ACSH G++++G +   S    H I P AEH+ C+VD++GRAG 
Sbjct: 373 RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGW 432

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           ++++   +  MP +P  + W A LGAC  + + +   +AAE LF   P   APY+L++N+
Sbjct: 433 IVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNM 492

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +GRW + A+  + M+     KE G SWIE++ +VH F+  D  HP+   IH  L  L
Sbjct: 493 YAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRL 552

Query: 631 LRLMIDEGYVPNKRFILH 648
            +LM   GYVP+   +LH
Sbjct: 553 TKLMKAAGYVPDTEMVLH 570



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 218/458 (47%), Gaps = 26/458 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS  LS         +G S+  + + T           +   +++  +L+S Y K   
Sbjct: 77  VGISIFLSACTDAREITIGRSIQLAILGT----------GIEEESIVQTALVSLYGKLGH 126

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             +A  +F  M  RD V+W+ MV+ + RNG      G F R ++L     ++ +    L 
Sbjct: 127 CTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLF-RQMDLDGVAPNKVTLVSGLD 185

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC          ++H  V   G +  V VG AL+  Y KCG   +  + FG++  +NV+ 
Sbjct: 186 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVA 245

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+A+ +   +N    + +++  +M L  + PNS T++S + AC+ + AL +GR+IH  + 
Sbjct: 246 WSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIH 305

Query: 285 KL--ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
            L   L+SD+ + +AL++MYSKCG++  A  +F+    LD V    ++   AQ+G  E+A
Sbjct: 306 VLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKA 365

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS--LGLGKQIHSLIIKSDFTSNPFVNN--G 398
           ++LF +M   G++  P +++    +F    +  L  G++ H +    D    P   +   
Sbjct: 366 LELFERMRLEGLQ--PTIITFTSVLFACSHAGMLDQGRK-HFVSFIGDHGIFPEAEHFGC 422

Query: 399 LINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVE 456
           ++++  + G + DS  +   M    + V+W + + A   + N   A+   E + +L+  +
Sbjct: 423 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRK 482

Query: 457 PTDVTFLSLLHA----CSHVGLVNKGMEFLKSMTEVHR 490
                 LS ++A     S V  + + M+   ++ E  R
Sbjct: 483 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGR 520



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 23/215 (10%)

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +  N F+ N LI++Y+KC   +D++ VF  +  +N  SW  M+AAFA + +  +    + 
Sbjct: 6   WIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFR 65

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKG----MEFLKSMTEVHRISPRAEHYACVVDM 504
            M L+G+ P +V     L AC+    +  G    +  L +  E   I   A     +V +
Sbjct: 66  GMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTA-----LVSL 120

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-AQPD---- 559
            G+ G   +A S   RM  + DV+ W A++ A + +G      +  E L L  Q D    
Sbjct: 121 YGKLGHCTDAASVFLRMSHR-DVVAWSAMVAAYARNG------HPREALGLFRQMDLDGV 173

Query: 560 SPAPYILMANIYSCSGRWKERAKAI--KRMKEMGV 592
           +P    L++ + +C+     R+ A+  +R++  G+
Sbjct: 174 APNKVTLVSGLDACASLGDLRSGALMHQRVEAQGI 208


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 330/616 (53%), Gaps = 30/616 (4%)

Query: 57  EGHFHLGPSLHASFIKT------------FEPFDNQN--------VYNVPNATVI-WNSL 95
            GH +  P LHAS +K              + + N          ++ +P  +V+ +N++
Sbjct: 28  HGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTI 87

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           LS Y K   +  A+KLFD    RD  SWN ++SG ++N +   G   F + +     + D
Sbjct: 88  LSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMK-MRCSSVRPD 146

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             ++ II+  CD        + +H  +     + +  +G  L+  Y + G     RKVF 
Sbjct: 147 NFTYAIIIPCCDLG----FGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFD 202

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  R ++TW A+IS   +    ++ + LF ++    I+ +  TY   +   +    + E
Sbjct: 203 GMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFE 262

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
             Q+H ++ +    SD    +AL+++YSKCG V  A ++FE   + D VS TVI+VGF Q
Sbjct: 263 AMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQ 322

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPF 394
           +G  EEAM LF +M    IE +      +LG      +   G+  H L++K     ++  
Sbjct: 323 SGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVV 382

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL-- 452
           V + +++MYSKCG++ D+++ F  M  R+  SWN +I  +A++G G KAL+LY EM L  
Sbjct: 383 VGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLG 442

Query: 453 -EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+ P +VTF+ +L ACSH GL+ +G  + K M + H I P AEHY C+VD++GRAGLL
Sbjct: 443 PSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLL 502

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA + I  +P+KPD ++W ALLGAC +HGD +M +  AE L+  +P + + Y+L+AN Y
Sbjct: 503 QEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLANSY 562

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +  G W E  +  + M+  GV+K  G SW+EI   +HSF+  D +HPQ +    VL  L 
Sbjct: 563 TDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTCMHSFLAGDXLHPQIEVASQVLPRLY 622

Query: 632 RLMIDEGYVPNKRFIL 647
             M +      K+ +L
Sbjct: 623 LQMRERSCTHRKKTLL 638


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 309/566 (54%), Gaps = 11/566 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
            G SLH   +KT          +  N+  + ++L+  Y+K  ++     +F +MP+R+ V
Sbjct: 86  FGESLHGYSVKT----------DFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVV 135

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  +++G +R G       +F   + +     D  +F+  L AC  S      + IHC 
Sbjct: 136 SWTAIIAGLVRAGYNKEALAYFS-DMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ 194

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G+     V N L T Y KCG    G ++F  M  R+V++WT +I   VQ    E  
Sbjct: 195 TLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENA 254

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +K F +M    ++PN  T+ + +  C+ L  +  G Q+H  + +  L   L + +++M M
Sbjct: 255 VKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAM 314

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           YSKC  ++ A  +F+     D +S + ++ G+AQ G  EEA      M + G   +    
Sbjct: 315 YSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAF 374

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++VL V G    L  GKQ+H+ ++      N  V + LINMYSKCG ++++ K+F     
Sbjct: 375 ASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEY 434

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
            N VSW +MI  +A HG   +A++L++++   G+ P  VTF+++L ACSH GLV+ G  +
Sbjct: 435 NNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHY 494

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             S+++VH+I P  +HY C++D++ RAG L +A S I+ MP + D +VW  LL AC IHG
Sbjct: 495 FNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHG 554

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D + GK AAEK+    P+    +I +AN+Y+  G+WKE A+  K MK  GV KE G SWI
Sbjct: 555 DVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWI 614

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVL 627
           + + +V +FV  D+ HP+ + I+ VL
Sbjct: 615 KFKDRVSAFVSGDRSHPEGEYIYDVL 640



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/531 (26%), Positives = 253/531 (47%), Gaps = 37/531 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLELGF 151
           N +L   +K   + NA +LFD M  RD +SW T++SG++           F K  +E G 
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           + +D    ++ L AC  +      + +H       +   V VG+AL+  Y K G    G 
Sbjct: 65  H-MDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGC 123

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF EM +RNV++WTA+I+GLV+    +E L  F  M +  +  ++ T+ S++ AC+   
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSG 183

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL  GR+IH    K    +   + + L  MY+KCG ++   ++FE   + D VS T I++
Sbjct: 184 ALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
              Q G EE A++ F +M +  +  +    +AV+        +  G+Q+H+ +I+     
Sbjct: 244 SNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVD 303

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  V N ++ MYSKC  L+ +  VF  ++ R+ +SW++MI+ +A+ G G +A +    M+
Sbjct: 304 SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMR 363

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEF-------------------------LKSMT 486
            EG  P +  F S+L  C ++ ++ +G +                            S+ 
Sbjct: 364 REGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIK 423

Query: 487 EVHRISPRAEH-----YACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQALLGACS 538
           E  +I   AE+     +  +++     G   EA    +++P   ++PD + + A+L ACS
Sbjct: 424 EASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS 483

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCSGRWKERAKAIKRM 587
             G  ++G +    L       P+   Y  M ++   +GR  +    I+ M
Sbjct: 484 HAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSM 534


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 314/585 (53%), Gaps = 17/585 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +KT           + N+  + ++LL  Y K  ++    ++F +MPMR+ VS
Sbjct: 135 GELLHGYAVKT----------GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 184

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  +++G +R G       +F   +     + D  +F I L AC  S      + IH   
Sbjct: 185 WTAIITGLVRAGYNKEALVYFSE-MWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 243

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++    V N L T Y KCG    G  +F +M +R+V++WT +I+ LVQ    E  +
Sbjct: 244 MKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAV 303

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + F++M    ++PN  T+ + +  C+ L  +  G Q+H ++  L L + L +E+++M MY
Sbjct: 304 QAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMY 363

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KCG +  +  IF      D VS + I+ G+ Q G   EA +L   M   G +     ++
Sbjct: 364 AKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALA 423

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           +VL   G    L  GKQ+H+ ++         V + LINMY KCG +E++ ++F      
Sbjct: 424 SVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAEND 483

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSW +MI  +A HG   + ++L+E++   G+ P  VTF+ +L ACSH GLV+ G  + 
Sbjct: 484 DIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYF 543

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +M++ ++ISP  EHY C++D++ RAG L +A   IE MP   D +VW  LL AC +HGD
Sbjct: 544 NAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGD 603

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E G+  AE++   +P+    +I +ANIY+  G+W+E A   K MK  GV KE G SWI+
Sbjct: 604 VERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIK 663

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVL------AELLRLMIDEGYVP 641
           ++  V +FV  D+ HPQ + I+ +L       EL   + + G++P
Sbjct: 664 VKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCVQETGFLP 708



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/456 (30%), Positives = 229/456 (50%), Gaps = 10/456 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N  L   +K   + NA ++FD M  +D +SW T++SG++   +       FK        
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D    ++   AC  +      +++H      G    V VG+AL+  Y K G    GR+
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRR 172

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM +RNV++WTA+I+GLV+    +E L  F +M    +  +S T+  ++ AC+   A
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 232

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH    K        + + L  MY+KCG +E    +FE     D VS T I+  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             Q G EE A+Q F++M ++ +  +    +AV+        +  G+Q+H+LI+     ++
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ MY+KCG L  S  +F  M  R+ VSW+++IA + + G+  +A EL   M++
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRM 412

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRA 508
           EG +PT+    S+L AC ++ ++  G +        + +S   EH A V    ++M  + 
Sbjct: 413 EGPKPTEFALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKC 467

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + EA S I       D++ W A++   + HG S 
Sbjct: 468 GSIEEA-SRIFDAAENDDIVSWTAMINGYAEHGYSR 502


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 312/563 (55%), Gaps = 15/563 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y+K  ++  A  +F+ MP  D VSWN ++SG + NG          R++EL   
Sbjct: 148 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD-------HRAIEL-LL 199

Query: 153 QLDQASF-------TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           Q+  +         + IL AC  +    + + IH  +     + +  +G  L+  Y K  
Sbjct: 200 QMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNH 259

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 KVF  M  R++I W A+ISG      ++E   +F  +    +  N  T  + + 
Sbjct: 260 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + + L+A    RQ+H +  K+    D  + + L+D Y KC  + DA ++FE     D ++
Sbjct: 320 STASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 379

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           +T ++   +Q    E A++LF++M++ G+E DP ++S++L      ++   GKQ+H+ +I
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S+ F  N L+  Y+KCG +ED+   FS +  R  VSW++MI   A+HG+G +ALE
Sbjct: 440 KRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALE 499

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M  EG+ P  +T  S+L AC+H GLV++   +  SM E+  I    EHY+C++D++
Sbjct: 500 LFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLL 559

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A   +  MP + +  VW ALLGA  +H D E+GK AAEKLF+ +P+    ++
Sbjct: 560 GRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHV 619

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L+AN Y+ SG W E AK  K MK+  + KE  +SW+E++ +VH+F+V DK HP    I+ 
Sbjct: 620 LLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYS 679

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L EL  LM   GY+PN    LH
Sbjct: 680 KLDELGDLMSKAGYIPNVDVDLH 702



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 146/511 (28%), Positives = 254/511 (49%), Gaps = 14/511 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + N+L++ Y     M +A ++FD+    R+ VSWN ++S +++N +       F   +  
Sbjct: 44  VANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWS 103

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  Q  +  F+ +++AC  S      + +H +V   GYE++V   NAL+  Y K G    
Sbjct: 104 GI-QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 162

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F +M   +V++W A+ISG V N      ++L ++M    + PN     S + AC+G
Sbjct: 163 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAG 222

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             A   GRQIHG + K    SD  I   L+DMY+K   ++DA ++F++    D +    +
Sbjct: 223 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNAL 282

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G +  G  +EA  +F  + K G+ ++   ++AVL       +    +Q+H+L  K  F
Sbjct: 283 ISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGF 342

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  V NGLI+ Y KC  L D+I+VF   +  + ++  SMI A ++  +G  A++L+ E
Sbjct: 343 IFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFME 402

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  +G+EP      SLL+AC+ +    +G +    + +   +S      A +V    + G
Sbjct: 403 MLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAKCG 461

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYIL 566
            + +A      +P +  V+ W A++G  + HG    GK A E LF    D   +P    +
Sbjct: 462 SIEDAELAFSSLPERG-VVSWSAMIGGLAQHGH---GKRALE-LFGRMVDEGINPNHITM 516

Query: 567 MANIYSC--SGRWKERAKAIKRMKEM-GVDK 594
            + + +C  +G   E  +    MKEM G+D+
Sbjct: 517 TSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 547



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 232/502 (46%), Gaps = 55/502 (10%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM-RVRNVITWTAVISGLVQNQ 236
           +H +    G+  +V V NAL+  Y   G     R+VF E    RN ++W  ++S  V+N 
Sbjct: 29  VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKND 88

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              + +++F +M    I P    +   V AC+G + +  GRQ+H ++ ++  + D+   +
Sbjct: 89  QCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTAN 148

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+DMY K G V+ A  IFE   + D VS   ++ G   NG +  A++L ++M  +G+  
Sbjct: 149 ALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVP 208

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +  M+S++L       +  LG+QIH  +IK++  S+ ++  GL++MY+K   L+D++KVF
Sbjct: 209 NVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVF 268

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL------LHACS 470
             M+ R+ + WN++I+  +  G   +A  ++  ++ EG+     T  ++      L A S
Sbjct: 269 DWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAAS 328

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHY---ACVVDMVG-----RAGLLIEARSFIE--- 519
               V+   E +  + + H ++   + Y   +C+ D +       +G +I   S I    
Sbjct: 329 ATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALS 388

Query: 520 ----------------RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSP 561
                           R  ++PD  V  +LL AC+     E GK     L   Q   D+ 
Sbjct: 389 QCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAF 448

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
           A   L+     C G  ++   A   + E GV     +SW  +            +   A 
Sbjct: 449 AGNALVYTYAKC-GSIEDAELAFSSLPERGV-----VSWSAM------------IGGLAQ 490

Query: 622 TIHGVLA-ELLRLMIDEGYVPN 642
             HG  A EL   M+DEG  PN
Sbjct: 491 HGHGKRALELFGRMVDEGINPN 512



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 192/408 (47%), Gaps = 23/408 (5%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S  ++ N   +S +L   A  G F LG  +H   IK           N  +   I   L+
Sbjct: 203 SSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA----------NADSDDYIGVGLV 252

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y K   + +A+K+FD M  RD + WN ++SG    G  D  F  F    + G   +++
Sbjct: 253 DMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGL-GVNR 311

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +   +L +    E +  ++ +H L    G+  +  V N LI SY+KC   S   +VF E
Sbjct: 312 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 371

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
               ++I  T++I+ L Q    E  +KLF++M    + P+     S + AC+ L A  +G
Sbjct: 372 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 431

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+H  L K    SD    +AL+  Y+KCGS+EDA   F    E   VS + ++ G AQ+
Sbjct: 432 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQH 491

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL------IIKSDFT 390
           G  + A++LF +MV  G  I+PN ++ +  V       GL  +          +   D T
Sbjct: 492 GHGKRALELFGRMVDEG--INPNHIT-MTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 548

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
              +  + +I++  + G L+D++++ + M    N+  W +++ A   H
Sbjct: 549 EEHY--SCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVH 594



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 141/269 (52%), Gaps = 8/269 (2%)

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFA 334
           G Q+H +       SD+ + +AL+ MY   G ++DA ++F E   E + VS   ++  + 
Sbjct: 26  GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYV 85

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           +N    +A+Q+F +MV +GI+      S V+       ++  G+Q+H+++++  +  + F
Sbjct: 86  KNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVF 145

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
             N L++MY K G ++ +  +F +M   + VSWN++I+    +G+  +A+EL  +MK  G
Sbjct: 146 TANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 205

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV--VDMVGRAGLLI 512
           + P      S+L AC+  G  + G +    M    + +  ++ Y  V  VDM  +   L 
Sbjct: 206 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMI---KANADSDDYIGVGLVDMYAKNHFLD 262

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
           +A    + M  + D+++W AL+  CS HG
Sbjct: 263 DAMKVFDWMSHR-DLILWNALISGCS-HG 289



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 110/210 (52%), Gaps = 22/210 (10%)

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAF 434
           LG Q+H++ + + F S+ FV N L+ MY   G ++D+ +VF    + RN+VSWN +++A+
Sbjct: 25  LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 84

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            ++     A++++ EM   G++PT+  F  +++AC+       G   + +  +VH +  R
Sbjct: 85  VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACT-------GSRNIDAGRQVHAMVVR 137

Query: 495 AEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
             +   V      VDM  + G +  A    E+MP   DV+ W AL+  C ++G      +
Sbjct: 138 MGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHD----H 192

Query: 549 AAEKLFLAQPDS---PAPYILMANIYSCSG 575
            A +L L    S   P  ++L + + +C+G
Sbjct: 193 RAIELLLQMKSSGLVPNVFMLSSILKACAG 222


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 308/561 (54%), Gaps = 6/561 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KC +   A K+FD MP R+ VSW+ ++SG + NG+       F      G Y
Sbjct: 416 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY 475

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ +F+  L AC           IH      G+E  V VGN+L+  Y KCG  +   K
Sbjct: 476 P-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 534

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN--PNSLTYLSSVMACSGL 270
           VF  +  R++I+W A+I+G V      + L  F  M    I   P+  T  S + ACS  
Sbjct: 535 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 594

Query: 271 QALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             +  G+QIHG L +      S   I  +L+D+Y KCG +  A + F+  +E   +S + 
Sbjct: 595 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSS 654

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +++G+AQ G   EAM LF ++ +   +ID   +S+++GVF     L  GKQ+ +L +K  
Sbjct: 655 LILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLP 714

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 V N +++MY KCG ++++ K F+ M  ++ +SW  +I  + +HG G K++ ++ 
Sbjct: 715 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFY 774

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM    +EP +V +L++L ACSH G++ +G E    + E H I PR EHYACVVD++GRA
Sbjct: 775 EMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRA 834

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+  I+ MP+KP+V +WQ LL  C +HGD E+GK   + L      +PA Y++M+
Sbjct: 835 GRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMS 894

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y  +G W E+  A +     G+ KE G+SW+EIE++VH F   +  HP    I   L 
Sbjct: 895 NLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLK 954

Query: 629 ELLRLMIDE-GYVPNKRFILH 648
           E  R + +E GYV   +  LH
Sbjct: 955 EAERRLREELGYVYGLKHELH 975



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 193/389 (49%), Gaps = 16/389 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y KC ++  A K+F  +  R  +SWN M++GF+  G        F    E  
Sbjct: 515 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEAN 574

Query: 151 FYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYE--EEVTVGNALITSYFKCGSS 207
             +  D+ + T +L AC  + +    K IH  +   G+      T+  +L+  Y KCG  
Sbjct: 575 IKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYL 634

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            S RK F +++ + +I+W+++I G  Q   + E + LF ++       +S    S +   
Sbjct: 635 FSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVF 694

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L +G+Q+  +  KL    +  + ++++DMY KCG V++A + F   +  D +S T
Sbjct: 695 ADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWT 754

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           V++ G+ ++G  ++++++F +M++  IE D     AVL        +  G+++ S ++++
Sbjct: 755 VVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLET 814

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKAL 444
                P V +   ++++  + G L+++  +   M  + +V  W ++++    HG+    +
Sbjct: 815 HGI-KPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGD----I 869

Query: 445 ELYEE-----MKLEGVEPTDVTFLSLLHA 468
           EL +E     ++++   P +   +S L+ 
Sbjct: 870 ELGKEVGKILLRIDAKNPANYVMMSNLYG 898



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 139/277 (50%), Gaps = 6/277 (2%)

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +L   + L+DMY KC     A+++F+   E + VS + ++ G   NG  + ++ LF +M 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           + GI  +    S  L   G+  +L  G QIH   +K  F     V N L++MYSKCG + 
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--PTDVTFLSLLHA 468
           ++ KVF R+  R+ +SWN+MIA F   G G KAL+ +  M+   ++  P + T  SLL A
Sbjct: 531 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 590

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           CS  G++  G +    +       P  A     +VD+  + G L  AR   +++  K  +
Sbjct: 591 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT-M 649

Query: 528 LVWQALLGACSIHGD--SEMGKYAAEKLFLAQPDSPA 562
           + W +L+   +  G+    MG +   +   +Q DS A
Sbjct: 650 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFA 686



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 138/277 (49%), Gaps = 22/277 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL   +  G  + G  +H   +++         ++ P++  I  SL+  Y+KC  + 
Sbjct: 584 LTSLLKACSSTGMIYAGKQIHGFLVRS--------GFHCPSSATITGSLVDLYVKCGYLF 635

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A K FD +  +  +SW++++ G+ + GEF    G FKR  EL   Q+D  + + I+   
Sbjct: 636 SARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELN-SQIDSFALSSIIGVF 694

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
               L    K +  L        E +V N+++  Y KCG      K F EM++++VI+WT
Sbjct: 695 ADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWT 754

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI------- 279
            VI+G  ++ L ++ +++F +M    I P+ + YL+ + ACS    + EG ++       
Sbjct: 755 VVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLET 814

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           HGI  K  ++   C+    +D+  + G +++A  + +
Sbjct: 815 HGI--KPRVEHYACV----VDLLGRAGRLKEAKHLID 845


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 203/609 (33%), Positives = 336/609 (55%), Gaps = 15/609 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           +++Y  +  +L + A+    + G  LHA+ +K    F+ Q            N+LL  Y 
Sbjct: 263 MNSYTTVG-VLQVCAELAQLNHGRELHAALLKCGTEFNIQ-----------CNALLVMYA 310

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           +C  + +A+++F ++  +D +SWN+M+S +++N  +     FF   ++ GF   D A   
Sbjct: 311 RCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF-NPDHACIV 369

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +LSA       +  + +H        + ++ + N L+  Y KC S     +VF  MR++
Sbjct: 370 SLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK 429

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           + ++WT +I+   Q+  Y E +  F       I  + +   S + ACSGL+++   +Q+H
Sbjct: 430 DHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVH 489

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
               +  L  DL +++ ++D+Y +CG V  A  IFE  ++ D V+ T ++  FA+NG   
Sbjct: 490 SYAIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLH 548

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA+ LF KM+ AGI+ D   +  +LG     +SL  GK+IH  +I+  F     V + L+
Sbjct: 549 EAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLV 608

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYS CG +  ++KVF     ++ V W +MI A   HG+G +A+ +++ M   GV P  V
Sbjct: 609 DMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHV 668

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           +FL+LL+ACSH  LV++G  +L  M   +++ P  EHYACVVD++GR+G   EA  FI+ 
Sbjct: 669 SFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKS 728

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP++P  +VW ALLGAC IH + E+   A +KL   +PD+P  Y+L++N+++  G+W   
Sbjct: 729 MPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNV 788

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG-Y 639
            +   +M E G+ K+   SWIEI   VH+F   D  H  +  IH  LAE+   +  EG Y
Sbjct: 789 KEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQY 848

Query: 640 VPNKRFILH 648
           V +  F+LH
Sbjct: 849 VEDTSFVLH 857



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 148/512 (28%), Positives = 245/512 (47%), Gaps = 29/512 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  + T    D+       +A  +   LL  Y KC ++ +A +LFD MP R   S
Sbjct: 74  GRQLHAHAVATGALGDD-------DAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFS 126

Query: 123 WNTMVSGFLRNGEFDMGFGFFK--RSLE-LGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           WN ++   L +G      G ++  R+ E +     D  +   +L AC           +H
Sbjct: 127 WNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVH 186

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLY 238
            L    G +    V NAL+  Y KCG   S  +VF  MR  R+V +W + ISG VQN ++
Sbjct: 187 GLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMF 246

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL-CIESA 297
            E L LF +M     + NS T +  +  C+ L  L  GR++H  L K   + ++ C  +A
Sbjct: 247 LEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC--NA 304

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+ MY++CG V+ A ++F    + D +S   +L  + QN    EA+  F +MV+ G   D
Sbjct: 305 LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              + ++L   G    L  G+++H+  +K    S+  + N L++MY KC  +E S +VF 
Sbjct: 365 HACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFD 424

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           RM  ++ VSW ++IA +A+     +A+  +   + EG++   +   S+L ACS       
Sbjct: 425 RMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS------- 477

Query: 478 GMEFLKSMTEVHRISPRAEHYAC-----VVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G++ +  + +VH  + R           ++D+ G  G +  A +  E M  K D++ W +
Sbjct: 478 GLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFE-MLDKKDIVTWTS 536

Query: 533 LLGACSIHGDSEMGKYAAEKLFLA--QPDSPA 562
           ++   + +G          K+  A  QPDS A
Sbjct: 537 MVNCFAENGLLHEAVALFGKMLNAGIQPDSVA 568


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 333/606 (54%), Gaps = 11/606 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V  + +LSI A  G F LG  +H   I +   FD Q          + N+L++ Y KC
Sbjct: 245 NSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQ----------VANTLVAMYSKC 294

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +A KLF+ MP  DTV+WN +++G+++NG  D     F   +  G  + D  +F   
Sbjct: 295 GNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGV-KPDSVTFASF 353

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +   S      K +H  +       +V + +ALI  YFK G     RK+F +  + +V
Sbjct: 354 LPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDV 413

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
              TA+ISG V + L  + +  F  +    + PNSLT  S + AC+ L AL  G+++H  
Sbjct: 414 AVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCD 473

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  L++ + + SA+ DMY+KCG ++ A++ F    E D +    ++  F+QNG  E A
Sbjct: 474 ILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMA 533

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M  +G + D   +S+ L       +L  GK++H  +I++ F+S+ FV + LI+M
Sbjct: 534 VDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDM 593

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG L  +  VF+ MA +N VSWNS+IAA+  HG   + L+L+ EM   GV P  VTF
Sbjct: 594 YSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTF 653

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L ++ AC H GLV +G+ +   MT  + I  R EHYAC+VD+ GRAG L EA   I+ MP
Sbjct: 654 LVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMP 713

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
             PD  VW  LLGAC +HG+ E+ K A+  L    P +   Y+L++N+++ +G W    K
Sbjct: 714 FTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLK 773

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             + MKE GV K  G SWI++    H F   +  HP++  I+ +L  LL  +  +GYVP 
Sbjct: 774 VRRLMKEKGVQKIPGYSWIDVNGGTHMFSAAEGNHPESVEIYLILNSLLLELRKQGYVPQ 833

Query: 643 KRFILH 648
               LH
Sbjct: 834 PYLPLH 839



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 238/451 (52%), Gaps = 3/451 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y     + +A ++FD++P RDT+ WN M+ G++++G+F+   G F   +   
Sbjct: 182 VGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFC-GMRTS 240

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           +  ++  ++T ILS C       +   +H LV   G+E +  V N L+  Y KCG+    
Sbjct: 241 YSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDA 300

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RK+F  M   + +TW  +I+G VQN   +E   LF  M    + P+S+T+ S + +    
Sbjct: 301 RKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILES 360

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   +++H  + +  +  D+ ++SAL+D+Y K G VE A +IF+    +D    T ++
Sbjct: 361 GSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMI 420

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+  +G   +A+  F  +++ G+  +   +++VL       +L LGK++H  I+K    
Sbjct: 421 SGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLE 480

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +   V + + +MY+KCG L+ + + F RM+  +S+ WNSMI++F+++G    A++L+ +M
Sbjct: 481 NIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQM 540

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            + G +   V+  S L + +++  +  G E +      +  S      + ++DM  + G 
Sbjct: 541 GMSGAKFDSVSLSSALSSAANLPALYYGKE-MHGYVIRNAFSSDTFVASALIDMYSKCGK 599

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           L  AR     M  K +V  W +++ A   HG
Sbjct: 600 LALARCVFNLMAGKNEV-SWNSIIAAYGNHG 629



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 217/451 (48%), Gaps = 3/451 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +L  Y+ C ++ +   LF  + + + + WN M+ G    G FD    F+ + L       
Sbjct: 85  VLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV-SP 143

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D+ +F  ++ AC       +  ++H      G+  ++ VG+ALI  Y   G     R+VF
Sbjct: 144 DKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVF 203

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E+  R+ I W  ++ G V++  +   +  F  M       NS+TY   +  C+     C
Sbjct: 204 DELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFC 263

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+HG++     + D  + + L+ MYSKCG++ DA ++F    + D V+   ++ G+ 
Sbjct: 264 LGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYV 323

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QNGF +EA  LF  M+ AG++ D    ++ L       SL   K++HS I++     + +
Sbjct: 324 QNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVY 383

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + + LI++Y K GD+E + K+F +    +     +MI+ +  HG    A+  +  +  EG
Sbjct: 384 LKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEG 443

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           + P  +T  S+L AC+ +  +  G E    + +  ++       + + DM  + G L  A
Sbjct: 444 MVPNSLTMASVLPACAALAALKLGKELHCDILK-KQLENIVNVGSAITDMYAKCGRLDLA 502

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
             F  RM  + D + W +++ + S +G  EM
Sbjct: 503 YEFFRRMS-ETDSICWNSMISSFSQNGKPEM 532



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 183/380 (48%), Gaps = 2/380 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +  AC  + +   ++ +H  + + G  +   + + ++  Y  CG  S G  +F  + + N
Sbjct: 50  LFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCN 109

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            + W  +I GL     ++  L  + KM    ++P+  T+   + AC GL  +     +H 
Sbjct: 110 ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHN 169

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
               L    DL + SAL+ +Y+  G + DA ++F+   + D +   V+L G+ ++G    
Sbjct: 170 TARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNN 229

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           AM  F  M  +   ++    + +L +        LG Q+H L+I S F  +P V N L+ 
Sbjct: 230 AMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVA 289

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG+L D+ K+F+ M   ++V+WN +IA + ++G   +A  L+  M   GV+P  VT
Sbjct: 290 MYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVT 349

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S L +    G +    E + S    HR+       + ++D+  + G +  AR   ++ 
Sbjct: 350 FASFLPSILESGSLRHCKE-VHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQN 408

Query: 522 PVKPDVLVWQALLGACSIHG 541
            +  DV V  A++    +HG
Sbjct: 409 TLV-DVAVCTAMISGYVLHG 427


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 324/609 (53%), Gaps = 51/609 (8%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + N+++S Y KC  +R+A  +FDD+  R   D VSWN++VS ++   + +     F +  
Sbjct: 296 VCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMT 355

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  D  S   IL AC     SL  + +H      G  ++V VGNA++  Y KCG  
Sbjct: 356 TRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKM 415

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-----HLGLIN-------- 254
               KVF  M+ ++V++W A+++G  Q    E  L LF +M      L ++         
Sbjct: 416 EEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGY 475

Query: 255 ----------------------PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ--- 289
                                 PN +T +S + AC  + AL  G++ H    K  L    
Sbjct: 476 AQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDG 535

Query: 290 -----SDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGFEEEA 342
                 DL + + L+DMY+KC S E A ++F+    ++ D V+ TV++ G+AQ+G    A
Sbjct: 536 PDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNA 595

Query: 343 MQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGL 399
           +QLF  M K    I PN   +S  L       +L  G+Q+H+ ++++ + S   FV N L
Sbjct: 596 LQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCL 655

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           I+MYSK GD++ +  VF  M  RN+VSW S++  +  HG G  AL +++EM+   + P  
Sbjct: 656 IDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDG 715

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +TFL +L+ACSH G+V+ G+ F   M++   + P  EHYAC+VD+ GRAG L EA   I 
Sbjct: 716 ITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLIN 775

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP++P  +VW ALL AC +H + E+G++AA +L   +  +   Y L++NIY+ + RWK+
Sbjct: 776 EMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKD 835

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            A+    MK  G+ K  G SWI+  K V +F V D+ HPQ+  I+  LA+L++ +   GY
Sbjct: 836 VARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGY 895

Query: 640 VPNKRFILH 648
           VP   F LH
Sbjct: 896 VPQTSFALH 904



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/558 (25%), Positives = 258/558 (46%), Gaps = 61/558 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVS--WNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +L+  Y+  +    A+ L + +P   +    WN ++   L  G     F  +++   LG
Sbjct: 195 TNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLG 254

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +  D  +F  +  AC       +   +H  V   G+   V V NA+++ Y KCG+    
Sbjct: 255 -WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHA 313

Query: 211 RKVFGEM---RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
             +F ++    ++++++W +V+S  +        L LF KM    L++P+ ++ ++ + A
Sbjct: 314 HNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPA 373

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L A   GRQ+HG   +  L  D+ + +A++DMY+KCG +E+A ++F+  +  D VS 
Sbjct: 374 CASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSW 433

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEID----------------------------- 357
             ++ G++Q G  E A+ LF +M +  IE+D                             
Sbjct: 434 NAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCD 493

Query: 358 ----PNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-------SDFTSNPF-VNNGLINM 402
               PN+V+ V  +     S+G    GK+ H   IK        D  ++   V NGLI+M
Sbjct: 494 CGSRPNVVTLV-SLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDM 552

Query: 403 YSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEM-KLE-GVEPT 458
           Y+KC   E + K+F  ++P  R+ V+W  MI  +A+HG+   AL+L+  M K++  ++P 
Sbjct: 553 YAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPN 612

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
           D T    L AC+ +  +  G +    +      S       C++DM  ++G +  A+   
Sbjct: 613 DFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVF 672

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGR 576
           + MP + + + W +L+    +HG  E      +++    P  P     +  +Y+C  SG 
Sbjct: 673 DNMPQR-NAVSWTSLMTGYGMHGRGEDALRVFDEM-RKVPLVPDGITFLVVLYACSHSGM 730

Query: 577 WKERAKAIKRM-KEMGVD 593
                    RM K+ GVD
Sbjct: 731 VDHGINFFNRMSKDFGVD 748


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 334/616 (54%), Gaps = 14/616 (2%)

Query: 27  KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86
           K+ +D  SS +K    + V  + +LSIS  E     G  LH   +++   F       VP
Sbjct: 97  KLFKDMMSSEAK---PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDF-------VP 146

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
              ++ N+L++ Y K  Q+ +A KLFD MP  D V WN M+ G+++NG  D     F   
Sbjct: 147 ---LVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEM 203

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G  + D  +FT  L +   S      K IH  +   G   +V + +ALI  YFKC  
Sbjct: 204 ISAGI-KPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRD 262

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           +    K+F      +++ +TA+ISG V N + ++ L++F  +    + PN+LT+ S + A
Sbjct: 263 AVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPA 322

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL A+  GR++HG + K  L+    + SA+M+MY+KCG ++ A  IF      D +  
Sbjct: 323 CAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICW 382

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+  F+Q+G  EEA+ LF +M   G++ D   VSA L       +L  GK+IH  +IK
Sbjct: 383 NSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIK 442

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F S+ F  + LINMY+KCG L  +  VF+ M  +N V+WNS+IAA+  HG    +L L
Sbjct: 443 GAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLAL 502

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M  EG++P  +TFL++L +C H G V  G+ + + MTE + I  + EHYAC+ D+ G
Sbjct: 503 FHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFG 562

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L EA   I  MP  P   VW  LLGAC +HG+ E+ + A+  L   +P +   Y+L
Sbjct: 563 RAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLL 622

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           + ++ + +G+W+   K    MKE GV K  G SWIE+      F   D  HP++  I+ +
Sbjct: 623 LTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFAADGSHPESPQIYSL 682

Query: 627 LAELLRLMIDEGYVPN 642
           L  LL  +   GYVP 
Sbjct: 683 LKSLLLELRKVGYVPQ 698



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 258/516 (50%), Gaps = 23/516 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y     + +A + FD M  +D V WN M++G+++ GE D     FK  +   
Sbjct: 47  VASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMS-S 105

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +F  +LS      +    + +H LV   G +    VGN L+T Y K       
Sbjct: 106 EAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDA 165

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RK+F  M   +++ W  +I G VQN   ++   LF +M    I P+S+T+ S + + +  
Sbjct: 166 RKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAES 225

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L + ++IHG + +  +  D+ + SAL+D+Y KC     A ++F  + + D V  T ++
Sbjct: 226 SSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMI 285

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+  NG  ++A+++F  +++  +  +    S++L       ++ LG+++H  IIK++  
Sbjct: 286 SGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELE 345

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               V + ++NMY+KCG L+ +  +F R++ ++++ WNS+I +F++ G   +A+ L+ +M
Sbjct: 346 EKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQM 405

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            +EGV+   VT  + L AC+++  ++ G E    M +    S   +  A +++M  + G 
Sbjct: 406 GMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSA-LINMYAKCGK 464

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL--------AQPDSPA 562
           L  AR     M  K +V  W +++ A   HG      Y A+ L L         QPD   
Sbjct: 465 LNIARLVFNLMQEKNEV-AWNSIIAAYGYHG------YLADSLALFHNMLEEGIQPD--- 514

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            +I    I S  G   +    ++  + M   +E GI
Sbjct: 515 -HITFLTILSSCGHAGQVEDGVRYFRCM--TEEYGI 547



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 202/395 (51%), Gaps = 4/395 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D+ +F  ++  C       + K+I  ++   G++ ++ V ++LI  Y   G     R+ F
Sbjct: 9   DKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFF 68

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  ++ + W  +I+G VQ    +  +KLF  M      P+S+T+ + V++ S  +A+ 
Sbjct: 69  DKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTF-ACVLSISCSEAMV 127

Query: 275 E-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           E GRQ+HG++ +  L     + + L+ +YSK   + DA ++F+   ++D V    ++ G+
Sbjct: 128 EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGY 187

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QNGF ++A  LF +M+ AGI+ D    ++ L      +SL   K+IH  I++     + 
Sbjct: 188 VQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDV 247

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           ++N+ LI++Y KC D   + K+F+     + V + +MI+ +  +G    ALE++  +  +
Sbjct: 248 YLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQK 307

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            + P  +TF S+L AC+ +  +  G E L      + +  +    + +++M  + G L  
Sbjct: 308 KMIPNALTFSSILPACAGLAAIKLGRE-LHGYIIKNELEEKCPVGSAIMNMYAKCGRLDL 366

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           A     R+ +K D + W +++ + S  G  E   Y
Sbjct: 367 AHLIFGRISIK-DAICWNSIITSFSQDGKPEEAIY 400



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 181/392 (46%), Gaps = 48/392 (12%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+  T+   +  C+GL  +  G+ I  ++ ++    D+ + S+L+ +Y+  G +EDA + 
Sbjct: 8   PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRF 67

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+   + D V   V++ G+ Q G  + A++LF  M+ +  + D    + VL +   +  +
Sbjct: 68  FDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMV 127

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G+Q+H L+++S     P V N L+ +YSK   L D+ K+F  M   + V WN MI  +
Sbjct: 128 EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGY 187

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            ++G    A  L+ EM   G++P  +TF S L + +           LK + E+H    R
Sbjct: 188 VQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAES-------SSLKQIKEIHGYIVR 240

Query: 495 AEHYACVVDMVGRAGLL---IEARSFIE-----RMPVKPDVLVWQALLGACSIHGDSEMG 546
              +  ++D+   + L+    + R  +       +  K D++++ A++    ++G   M 
Sbjct: 241 ---HGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNG---MN 294

Query: 547 KYAAE--KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           K A E  +  L +   P      + + +C+                      G++ I++ 
Sbjct: 295 KDALEIFRWLLQKKMIPNALTFSSILPACA----------------------GLAAIKLG 332

Query: 605 KQVHSFVVDDKMH---PQADTIHGVLAELLRL 633
           +++H +++ +++    P    I  + A+  RL
Sbjct: 333 RELHGYIIKNELEEKCPVGSAIMNMYAKCGRL 364


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/588 (34%), Positives = 334/588 (56%), Gaps = 13/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H + +K+    D   VY       + N+L++ Y KC +M +A ++F  M  RD V
Sbjct: 266 LGMGIHGAALKSNHFAD---VY-------VANALIAMYAKCGRMEDAERVFASMLCRDYV 315

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWNT++SG ++N  +     +F R ++    + DQ S   +++A  RS   L  K +H  
Sbjct: 316 SWNTLLSGLVQNELYRDALNYF-RDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAY 374

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G +  + +GN LI  Y KC         F  M  +++I+WT +I+G  QN+ + E 
Sbjct: 375 AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEA 434

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           + LF K+ +  ++ + +   S + ACSGL++    R+IHG ++K  L +D+ +++A++++
Sbjct: 435 INLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNV 493

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y + G  + A + FE     D VS T ++     NG   EA++LF  + +  I+ D   +
Sbjct: 494 YGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAI 553

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            + L      +SL  GK+IH  +I+  F     + + L++MY+ CG +E+S K+F  +  
Sbjct: 554 ISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQ 613

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ + W SMI A   HG G +A+ L+++M  E V P  +TFL+LL+ACSH GL+ +G  F
Sbjct: 614 RDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRF 673

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M   +++ P  EHYAC+VD++ R+  L EA  F+  MP+KP   VW ALLGAC IH 
Sbjct: 674 FEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHS 733

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G+ AA++L  +   +   Y L++NI++  GRW +  +   RMK  G+ K  G SWI
Sbjct: 734 NKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWI 793

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           E++ ++H+F+  DK HPQ D I+  LA+  +L+  + GY+   +F+ H
Sbjct: 794 EVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFH 841



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 247/529 (46%), Gaps = 37/529 (6%)

Query: 58  GHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           G   LG  +H   +K  F  F             + N+L++ Y KC  +  A  LFD + 
Sbjct: 159 GESRLGAEIHGVAVKCGFGEF-----------VFVCNALIAMYGKCGDLGGARVLFDGIM 207

Query: 117 M--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M   DTVSWN+++S  +  G+       F+R  E+G    +  +F   L   +      +
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVAS-NTYTFVAALQGVEDPSFVKL 266

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
              IH       +  +V V NALI  Y KCG      +VF  M  R+ ++W  ++SGLVQ
Sbjct: 267 GMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQ 326

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N+LY + L  F  M      P+ ++ L+ + A      L  G+++H    +  L S++ I
Sbjct: 327 NELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQI 386

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + L+DMY+KC  V+     FE   E D +S T I+ G+AQN    EA+ LF K+   G+
Sbjct: 387 GNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGM 446

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           ++DP M+ +VL       S    ++IH  + K D  ++  + N ++N+Y + G  + + +
Sbjct: 447 DVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARR 505

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
            F  +  ++ VSW SMI     +G   +ALEL+  +K   ++P  +  +S L A +++  
Sbjct: 506 AFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSS 565

Query: 475 VNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           + KG        E+H    R   +      + +VDM    G +  +R     +  + D++
Sbjct: 566 LKKG-------KEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR-DLI 617

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           +W +++ A  +HG        A  LF    D    P     +A +Y+CS
Sbjct: 618 LWTSMINANGMHGCGN----EAIALFKKMTDENVIPDHITFLALLYACS 662



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 233/486 (47%), Gaps = 28/486 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  +K+              +  +   LL  Y KC  +++AVK+FD+M  R   +
Sbjct: 65  GQQLHARLLKSHL------------SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFT 112

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN M+  F+ +G++      +K    LG   +D  +F  +L AC     S +   IH + 
Sbjct: 113 WNAMMGAFVSSGKYLEAIELYKEMRVLGV-AIDACTFPSVLKACGALGESRLGAEIHGVA 171

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE--MRVRNVITWTAVISGLVQNQLYEE 240
             CG+ E V V NALI  Y KCG     R +F    M   + ++W ++IS  V      E
Sbjct: 172 VKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLE 231

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L LF +M    +  N+ T+++++        +  G  IHG   K    +D+ + +AL+ 
Sbjct: 232 ALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIA 291

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+KCG +EDA ++F      D VS   +L G  QN    +A+  F  M  +  + D   
Sbjct: 292 MYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVS 351

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           V  ++   G   +L  GK++H+  I++   SN  + N LI+MY+KC  ++     F  M 
Sbjct: 352 VLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMH 411

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN---- 476
            ++ +SW ++IA +A++    +A+ L+ +++++G++   +   S+L ACS +   N    
Sbjct: 412 EKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 477 -KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G  F + + ++   +        +V++ G  G    AR   E +  K D++ W +++ 
Sbjct: 472 IHGYVFKRDLADIMLQNA-------IVNVYGEVGHRDYARRAFESIRSK-DIVSWTSMIT 523

Query: 536 ACSIHG 541
            C  +G
Sbjct: 524 CCVHNG 529



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 20/293 (6%)

Query: 252 LINPNSLTYLSSVMA--CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
           L  P+ L +  S++   C  ++AL +G+Q+H  L K  L + L   + L+ MY KCGS++
Sbjct: 39  LATPSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHLSAFL--ATKLLHMYEKCGSLK 96

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA ++F+   E    +   ++  F  +G   EA++L+ +M   G+ ID     +VL   G
Sbjct: 97  DAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACG 156

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSW 427
                 LG +IH + +K  F    FV N LI MY KCGDL  +  +F    M   ++VSW
Sbjct: 157 ALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSW 216

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           NS+I+A    G   +AL L+  M+  GV     TF++ L        V  GM        
Sbjct: 217 NSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------G 269

Query: 488 VHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +H  + ++ H+A       ++ M  + G + +A      M  + D + W  LL
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCR-DYVSWNTLL 321



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 93/171 (54%), Gaps = 16/171 (9%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  G+Q+H+ ++KS  ++  F+   L++MY KCG L+D++KVF  M  R   +WN+M+ 
Sbjct: 61  ALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMG 118

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           AF   G   +A+ELY+EM++ GV     TF S+L AC  +G    G        E+H ++
Sbjct: 119 AFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG-------AEIHGVA 171

Query: 493 PRAEH----YAC--VVDMVGRAGLLIEARSFIER-MPVKPDVLVWQALLGA 536
            +       + C  ++ M G+ G L  AR   +  M  K D + W +++ A
Sbjct: 172 VKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/614 (34%), Positives = 336/614 (54%), Gaps = 36/614 (5%)

Query: 63  GPSLHASFIKTFEP-------------------------FDNQNVYNVPNATVIWNSLLS 97
           G SLHA +IK+F P                         FD+ +  NV +    +N+L+S
Sbjct: 27  GKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFS----FNTLIS 82

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y K   +  A +LFD+MP  D+VS+NT+++ + R G+    F  F    E  F  +D  
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE-AFLDMDGF 141

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           + + I++AC    + L+ + +H L  + G +  V+VGNALITSY K G     R++F  +
Sbjct: 142 TLSGIITACG-INVGLI-RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWL 199

Query: 218 -RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+ ++W +++   +Q++   + L+L+++M +  +  +  T  S + A + +Q L  G
Sbjct: 200 SEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGG 259

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDGVSMTVILVGFA- 334
            Q H  L K     +  + S L+D+YSKCG  + D  ++F+     D V    ++ G++ 
Sbjct: 260 LQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSL 319

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
                +EA++ F ++   G   D   +  V+      +S   G+Q+H L +K D  SN  
Sbjct: 320 YEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRI 379

Query: 395 -VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            VNN LI MYSKCG+L D+  +F  M   N+VS+NSMIA +A+HG GF++L L++ M   
Sbjct: 380 SVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEM 439

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  PT++TF+S+L AC+H G V  G  +   M +   I P A H++C++D++GRAG L E
Sbjct: 440 GFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSE 499

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   IE +P  P    W ALLGAC IHG+ E+   AA +L    P + APY+++ANIYS 
Sbjct: 500 AERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSD 559

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +GR ++ A   K M++ GV K+ G SWIE+ +++H FV +D  HP    I   L E++R 
Sbjct: 560 NGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRK 619

Query: 634 MIDEGYVPNKRFIL 647
           +   GY P  R  L
Sbjct: 620 IKKVGYTPEVRSAL 633



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 223/477 (46%), Gaps = 41/477 (8%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F   L  C         K +H L           + N  +  Y KC   S+ R+VF   
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 218 RVRNVITWTAVISGL-------VQNQLYEE------------------------GLKLFV 246
              NV ++  +IS         V +QL++E                          +LF+
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M    ++ +  T    + AC     L   RQ+H +     L S + + +AL+  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 307 SVEDAWQIFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            +++A +IF + +E+ D VS   ++V + Q+    +A++L+++M   G+ +D   +++VL
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD-LEDSIKVFSRMAPRNS 424
             F     L  G Q H+ +IKS +  N  V +GLI++YSKCG  + D  KVF  ++  + 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 425 VSWNSMIAAFARHGN-GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           V WN+MI+ ++ + +   +ALE + ++++ G  P D + + ++ ACS++   ++G +   
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
              ++   S R      ++ M  + G L +A++  + MP + + + + +++   + HG  
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGMG 426

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKERAKAIKRMKE-MGVDKETG 597
               +  +++ L    +P     ++ + +C  +GR ++       MK+  G++ E G
Sbjct: 427 FQSLHLFQRM-LEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 320/564 (56%), Gaps = 3/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +    ++ N LLS Y K + + +  ++FD M +RD VSWNTM+ G+ + G ++     F 
Sbjct: 306 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 365

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             +    ++ D  + T IL AC         K +H  +   GYE + T  N LI  Y KC
Sbjct: 366 EMVNQ--FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 423

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G+  + ++VF  M+ ++ ++W ++I+  +QN  ++E +KLF KM    + P+S+TY+  +
Sbjct: 424 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLL 482

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              + L  L  G+++H  L K+   S++ + + L+DMY+KCG + D+ ++FE  +  D +
Sbjct: 483 SMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 542

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +   I+     +      +++  +M   G+  D   + ++L V  +  +   GK+IH  I
Sbjct: 543 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 602

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            K    S+  V N LI MYSKCG L +S +VF  M  ++ V+W ++I+A   +G G KA+
Sbjct: 603 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 662

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + EM+  G+ P  V F++++ ACSH GLV +G+ +   M + ++I PR EHYACVVD+
Sbjct: 663 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 722

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + R+ LL +A  FI  MP+KPD  +W ALL AC + GD+E+ +  +E++    PD    Y
Sbjct: 723 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYY 782

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++N+Y+  G+W +     K +K  G+ K+ G SW+EI+ +V+ F    K   Q + ++
Sbjct: 783 VLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVN 842

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
            +L  L  LM  EGY+ N +F+LH
Sbjct: 843 KLLGMLAGLMAKEGYIANLQFVLH 866



 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 271/506 (53%), Gaps = 18/506 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L+  Y + + +  A K+F++MP+RD VSWN+++SG+  NG ++     + R   LG
Sbjct: 211 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 270

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + + +L AC          +IH L+   G +++V V N L++ Y K      G
Sbjct: 271 VVP-DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 329

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F +M +R+ ++W  +I G  Q  LYEE +KLF++M +    P+ LT  S + AC  L
Sbjct: 330 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL 388

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ +H  +     + D    + L++MY+KCG++  + ++F   +  D VS   ++
Sbjct: 389 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 448

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKS 387
             + QNG  +EAM+LF KM+K   ++ P+ V+ V+ +  + T LG   LGK++H  + K 
Sbjct: 449 NVYIQNGSFDEAMKLF-KMMKT--DVKPDSVTYVM-LLSMSTQLGDLXLGKELHCDLAKM 504

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SN  V+N L++MY+KCG++ DS+KVF  M  R+ ++WN++IA+     +    L + 
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 564

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EGV P   T LS+L  CS +    +G E    + ++  +         +++M  +
Sbjct: 565 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG-LESDVPVGNVLIEMYSK 623

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYI 565
            G L  +    + M  K DV+ W AL+ AC ++G+ +    A  ++  A   PD  A   
Sbjct: 624 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA--- 679

Query: 566 LMANIYSC--SGRWKERAKAIKRMKE 589
            +A I++C  SG  +E      RMK+
Sbjct: 680 FVAIIFACSHSGLVEEGLNYFHRMKK 705



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 236/434 (54%), Gaps = 11/434 (2%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P  +   WN+++     NG F      +  +  +   Q D  +F  +++AC       ++
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRL-QPDTYTFPSVINACAGLLDFEMA 193

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  V   G+  ++ +GNALI  Y +       RKVF EM +R+V++W ++ISG   N
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 236 QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
             + E L+++ +  +LG++ P+S T  S + AC GL ++ EG  IHG++ K+ ++ D+ +
Sbjct: 254 GYWNEALEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIV 312

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + L+ MY K   + D  +IF+     D VS   ++ G++Q G  EE+++LF++MV    
Sbjct: 313 NNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN--- 369

Query: 355 EIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           +  P++  ++++L   G    L  GK +H  +I S +  +   +N LINMY+KCG+L  S
Sbjct: 370 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLAS 429

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +VFS M  ++SVSWNSMI  + ++G+  +A++L++ MK + V+P  VT++ LL   + +
Sbjct: 430 QEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQL 488

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G +  G E    + ++   +        +VDM  + G + ++    E M  + D++ W  
Sbjct: 489 GDLXLGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNT 546

Query: 533 LLGACSIHGDSEMG 546
           ++ +C    D  +G
Sbjct: 547 IIASCVHSEDCNLG 560



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 201/426 (47%), Gaps = 27/426 (6%)

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           Q  F+ I  A   +  +     +H L+   G    V     LI  Y      +S   VF 
Sbjct: 72  QTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR 131

Query: 216 -EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
                 NV  W ++I  L  N L+ E L L+ +     + P++ T+ S + AC+GL    
Sbjct: 132 LASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 191

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             + IH  +  +   SDL I +AL+DMY +   ++ A ++FE     D VS   ++ G+ 
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 251

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            NG+  EA++++ +    G+  D   +S+VL   G   S+  G  IH LI K     +  
Sbjct: 252 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 311

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           VNNGL++MY K   L D  ++F +M  R++VSWN+MI  +++ G   ++++L+ EM +  
Sbjct: 312 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQ 370

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVDMVGR 507
            +P  +T  S+L AC H+G     +EF K + +    S     Y C       +++M  +
Sbjct: 371 FKPDLLTITSILQACGHLG----DLEFGKYVHDYMITSG----YECDTTASNILINMYAK 422

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDSPA 562
            G L+ ++     M  K D + W +++     +G  +     A KLF       +PDS  
Sbjct: 423 CGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFD----EAMKLFKMMKTDVKPDSVT 477

Query: 563 PYILMA 568
             +L++
Sbjct: 478 YVMLLS 483



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 163/339 (48%), Gaps = 23/339 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS+S + G   LG  LH    K    F N N+       V+ N+L+  Y KC +M +++
Sbjct: 481 LLSMSTQLGDLXLGKELHCDLAKM--GF-NSNI-------VVSNTLVDMYAKCGEMGDSL 530

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F++M  RD ++WNT+++  + + + ++G     R    G    D A+   IL  C   
Sbjct: 531 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP-DMATMLSILPVCSLL 589

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 K IH  ++  G E +V VGN LI  Y KCGS  +  +VF  M+ ++V+TWTA+I
Sbjct: 590 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 649

Query: 230 SGLVQNQLYEEG---LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWK 285
           S      +Y EG   ++ F +M    I P+ + +++ + ACS    + EG    H +   
Sbjct: 650 SAC---GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD 706

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             ++  +   + ++D+ S+   ++ A   I     + D      +L     +G  E A +
Sbjct: 707 YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQR 766

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +  ++    IE++P+     + V  V  +LG   Q+ S+
Sbjct: 767 VSERI----IELNPDDTGYYVLVSNVYAALGKWDQVRSI 801


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 326/583 (55%), Gaps = 11/583 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            + G  LHA  IK              +  V+  +++  Y K + + +A + F  +P   
Sbjct: 266 LNTGRQLHAHAIKN----------KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHT 315

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             + N M+ G +R G      G F+  +     + D  S + + SAC  ++     + +H
Sbjct: 316 VETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVH 374

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           CL    G++ ++ V NA++  Y KC +      +F  M+ ++ ++W A+I+ L QN  Y+
Sbjct: 375 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + +  F +M    + P+  TY S + AC+ L++L  G  +H  + K  L SD  + S ++
Sbjct: 435 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 494

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG +++A ++ +       VS   IL GF+ N   EEA + F +M+  G++ D  
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 554

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL       ++ LGKQIH  IIK +   + ++++ L++MY+KCGD+ DS+ VF ++
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ VSWN+MI  +A HG G +AL ++E M+ E V P   TF+++L ACSHVGL + G 
Sbjct: 615 EKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGC 674

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +   MT  +++ P+ EH+AC+VD++GR+    EA  FI  MP + D ++W+ LL  C I
Sbjct: 675 RYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 734

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
             D E+ + AA  + L  PD  + YIL++N+Y+ SG+W + ++  + +K+  + KE G S
Sbjct: 735 RQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCS 794

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           WIE++ ++H F+V DK HP++  ++ +L +L+  M   GY P+
Sbjct: 795 WIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPD 837



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 261/534 (48%), Gaps = 38/534 (7%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L+ Y     +  AV LFD MP  D VSWN +VSG+ + G F      F     
Sbjct: 83  TVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D+ +F ++L +C   E   +   +H L    G E +V  G+AL+  Y KC S  
Sbjct: 143 RGVSP-DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSSVM 265
                F  M  RN ++W A I+G VQN+ Y  GL+LF++M    LG+  P   +Y S+  
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFR 258

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ +  L  GRQ+H    K    SD  + +A++D+Y+K  S+ DA + F         +
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 318

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++VG  + G   EAM LF  M+++ I  D   +S V            G+Q+H L I
Sbjct: 319 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS F  +  VNN ++++Y KC  L ++  +F  M  ++SVSWN++IAA  ++G+    + 
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            + EM   G++P D T+ S+L AC+ +  +  G+     + +   +   A   + VVDM 
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 497

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPA 562
            + G++ EA+   +R+  +  V+ W A+L   S++ +SE     A+K F    D    P 
Sbjct: 498 CKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESE----EAQKFFSEMLDMGLKPD 552

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            +     + +C+                       ++ IE+ KQ+H  ++  +M
Sbjct: 553 HFTFATVLDTCA----------------------NLATIELGKQIHGQIIKQEM 584



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 240/494 (48%), Gaps = 18/494 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L S SA E    LG  +HA  +KT    D +            ++L+  Y KC  + +A+
Sbjct: 156 LKSCSALE-ELSLGVQVHALAVKTGLEIDVRT----------GSALVDMYGKCRSLDDAL 204

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             F  MP R+ VSW   ++G ++N ++  G   F     LG   + Q S+     +C   
Sbjct: 205 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGL-GVSQPSYASAFRSCAAM 263

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + +H       +  +  VG A++  Y K  S +  R+ F  +    V T  A++
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 323

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            GLV+  L  E + LF  M    I  + ++      AC+  +   +G+Q+H +  K    
Sbjct: 324 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 383

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            D+C+ +A++D+Y KC ++ +A+ IF+  ++ D VS   I+    QNG  ++ +  F +M
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++ G++ D     +VL       SL  G  +H  +IKS   S+ FV + +++MY KCG +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           +++ K+  R+  +  VSWN++++ F+ +    +A + + EM   G++P   TF ++L  C
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           +++  +  G +    + +   +    + Y  + +VDM  + G + ++    E++  K D 
Sbjct: 564 ANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYAKCGDMPDSLLVFEKVE-KRDF 619

Query: 528 LVWQALLGACSIHG 541
           + W A++   ++HG
Sbjct: 620 VSWNAMICGYALHG 633



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 45/191 (23%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN---- 439
           ++ S F  N FV+N L+ MY++C     + +VF  M  R++VSWN+M+ A++  G+    
Sbjct: 43  MVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 440 --------------------GF-------KALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
                               G+       ++++L+ EM   GV P   TF  LL +CS  
Sbjct: 103 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS-- 160

Query: 473 GLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
                 +E L    +VH ++ +          + +VDM G+   L +A  F   MP + +
Sbjct: 161 -----ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-N 214

Query: 527 VLVWQALLGAC 537
            + W A +  C
Sbjct: 215 WVSWGAAIAGC 225


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 326/583 (55%), Gaps = 11/583 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            + G  LHA  IK              +  V+  +++  Y K + + +A + F  +P   
Sbjct: 266 LNTGRQLHAHAIKN----------KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHT 315

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             + N M+ G +R G      G F+  +     + D  S + + SAC  ++     + +H
Sbjct: 316 VETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVH 374

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           CL    G++ ++ V NA++  Y KC +      +F  M+ ++ ++W A+I+ L QN  Y+
Sbjct: 375 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 434

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + +  F +M    + P+  TY S + AC+ L++L  G  +H  + K  L SD  + S ++
Sbjct: 435 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 494

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG +++A ++ +       VS   IL GF+ N   EEA + F +M+  G++ D  
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 554

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL       ++ LGKQIH  IIK +   + ++++ L++MY+KCGD+ DS+ VF ++
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 614

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ VSWN+MI  +A HG G +AL ++E M+ E V P   TF+++L ACSHVGL + G 
Sbjct: 615 EKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGC 674

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +   MT  +++ P+ EH+AC+VD++GR+    EA  FI  MP + D ++W+ LL  C I
Sbjct: 675 RYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 734

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
             D E+ + AA  + L  PD  + YIL++N+Y+ SG+W + ++  + +K+  + KE G S
Sbjct: 735 RQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCS 794

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           WIE++ ++H F+V DK HP++  ++ +L +L+  M   GY P+
Sbjct: 795 WIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPD 837



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 261/534 (48%), Gaps = 38/534 (7%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L+ Y     +  AV LFD MP  D VSWN +VSG+ + G F      F     
Sbjct: 83  TVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 142

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D+ +F ++L +C   E   +   +H L    G E +V  G+AL+  Y KC S  
Sbjct: 143 RGVSP-DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 201

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSSVM 265
                F  M  RN ++W A I+G VQN+ Y  GL+LF++M    LG+  P   +Y S+  
Sbjct: 202 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFR 258

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ +  L  GRQ+H    K    SD  + +A++D+Y+K  S+ DA + F         +
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 318

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++VG  + G   EAM LF  M+++ I  D   +S V            G+Q+H L I
Sbjct: 319 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 378

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS F  +  VNN ++++Y KC  L ++  +F  M  ++SVSWN++IAA  ++G+    + 
Sbjct: 379 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 438

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            + EM   G++P D T+ S+L AC+ +  +  G+     + +   +   A   + VVDM 
Sbjct: 439 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 497

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPA 562
            + G++ EA+   +R+  +  V+ W A+L   S++ +SE     A+K F    D    P 
Sbjct: 498 CKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESE----EAQKFFSEMLDMGLKPD 552

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            +     + +C+                       ++ IE+ KQ+H  ++  +M
Sbjct: 553 HFTFATVLDTCA----------------------NLATIELGKQIHGQIIKQEM 584



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 240/494 (48%), Gaps = 18/494 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L S SA E    LG  +HA  +KT    D +            ++L+  Y KC  + +A+
Sbjct: 156 LKSCSALE-ELSLGVQVHALAVKTGLEIDVRT----------GSALVDMYGKCRSLDDAL 204

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             F  MP R+ VSW   ++G ++N ++  G   F     LG   + Q S+     +C   
Sbjct: 205 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGL-GVSQPSYASAFRSCAAM 263

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + +H       +  +  VG A++  Y K  S +  R+ F  +    V T  A++
Sbjct: 264 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 323

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            GLV+  L  E + LF  M    I  + ++      AC+  +   +G+Q+H +  K    
Sbjct: 324 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 383

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            D+C+ +A++D+Y KC ++ +A+ IF+  ++ D VS   I+    QNG  ++ +  F +M
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++ G++ D     +VL       SL  G  +H  +IKS   S+ FV + +++MY KCG +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           +++ K+  R+  +  VSWN++++ F+ +    +A + + EM   G++P   TF ++L  C
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           +++  +  G +    + +   +    + Y  + +VDM  + G + ++    E++  K D 
Sbjct: 564 ANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYAKCGDMPDSLLVFEKVE-KRDF 619

Query: 528 LVWQALLGACSIHG 541
           + W A++   ++HG
Sbjct: 620 VSWNAMICGYALHG 633



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 45/191 (23%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN---- 439
           ++ S F    FV+N L+ MY++C     + +VF  M  R++VSWN+M+ A++  G+    
Sbjct: 43  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 102

Query: 440 --------------------GF-------KALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
                               G+       ++++L+ EM   GV P   TF  LL +CS  
Sbjct: 103 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS-- 160

Query: 473 GLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
                 +E L    +VH ++ +          + +VDM G+   L +A  F   MP + +
Sbjct: 161 -----ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-N 214

Query: 527 VLVWQALLGAC 537
            + W A +  C
Sbjct: 215 WVSWGAAIAGC 225


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 328/579 (56%), Gaps = 17/579 (2%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           LHA  IK        NV++  +  V+  +++  Y K   + +A + F  +P  +  + N 
Sbjct: 274 LHAHAIK--------NVFS--SDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNA 323

Query: 126 MVSGFLRNG---EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           M+ G +R G   E    F F  RS  +GF   D  S + + SAC   +       +HCL 
Sbjct: 324 MMVGLVRTGLGAEAMQLFQFMTRS-GVGF---DVISLSGVFSACAEVKGYFQGLQVHCLA 379

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++ +V V NA++  Y KC +      VF EM  R+ ++W A+I+ L QN+ YE+ +
Sbjct: 380 VKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTI 439

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
               +M    + P+  TY S + AC+GLQ+L  G  +HG   K  L  D  + S ++DMY
Sbjct: 440 AHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMY 499

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG++ +A ++ +     + VS   I+ GF+     EEA + F +M+  G++ D    +
Sbjct: 500 CKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYA 559

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            VL       ++ LGKQIH  IIK +   + ++++ L++MY+KCG++ DS+ +F +    
Sbjct: 560 TVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKL 619

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSWN+MI  +A HG G +ALE++E M+   V P   TF+++L ACSHVGL++ G ++ 
Sbjct: 620 DFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYF 679

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             MT  +++ P+ EH+AC+VD++GR+    EA  FI  MP++ D +VW+ LL  C I  D
Sbjct: 680 HLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQD 739

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E+ + AA  +    PD  + YIL++N+Y+ SG+W + ++  + M++  + KE G SWIE
Sbjct: 740 VEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIE 799

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           ++ ++H F+V DK+HP++  ++ +L  L+  M   GY P
Sbjct: 800 VQSEMHGFLVGDKVHPRSKEVYEMLNSLIGEMKLSGYEP 838



 Score =  228 bits (580), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 156/539 (28%), Positives = 256/539 (47%), Gaps = 48/539 (8%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L+ Y+       A  LF  MP  D VSWNT++SG+ ++G F    G       
Sbjct: 85  TVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSR 144

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G   LD+ +  ++L +C   +   +   IH L    G E +V  G+AL+  Y KC S  
Sbjct: 145 RGV-ALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLD 203

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSSVM 265
              + F  M  RN ++W A I+G VQN+ Y  G++LFV+M    LG+  P    Y S+  
Sbjct: 204 DALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQP---AYASAFR 260

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ +  L   RQ+H    K    SD  + +A++D+Y+K G++ DA + F      +  +
Sbjct: 261 SCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVET 320

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++VG  + G   EAMQLF  M ++G+  D   +S V            G Q+H L +
Sbjct: 321 CNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAV 380

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS F  +  V N ++++Y KC  L ++  VF  M  R+SVSWN++IAA  ++      + 
Sbjct: 381 KSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 440

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHV-----GLVNKGMEFLKSMTEVHRISPRAEHYAC 500
              EM   G+EP D T+ S+L AC+ +     GLV  G      +     +S      + 
Sbjct: 441 HLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVS------ST 494

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD- 559
           VVDM  + G + EA+   +R+  + +++ W +++   S+   SE     A++ F    D 
Sbjct: 495 VVDMYCKCGAITEAQKLHDRIGGQ-ELVSWNSIISGFSLTKQSE----EAQRFFSEMLDM 549

Query: 560 --SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
              P  +     + +C+                       ++ IE+ KQ+H  ++  +M
Sbjct: 550 GVKPDHFTYATVLDTCA----------------------NLATIELGKQIHGQIIKQEM 586



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 234/482 (48%), Gaps = 17/482 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HA  +KT    D +            ++L+  Y KC  + +A++ F  M  R++V
Sbjct: 169 LGVQIHALAVKTGLETDVR----------AGSALVDMYGKCRSLDDALRFFHGMGERNSV 218

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW   ++G ++N ++  G   F +   LG   + Q ++     +C        ++ +H  
Sbjct: 219 SWGAAIAGCVQNEQYTRGMELFVQMQRLGL-GVSQPAYASAFRSCAAMPCLSTARQLHAH 277

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                +  +  VG A++  Y K G+    R+ F  +   NV T  A++ GLV+  L  E 
Sbjct: 278 AIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEA 337

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           ++LF  M    +  + ++      AC+ ++   +G Q+H +  K     D+C+ +A++D+
Sbjct: 338 MQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDL 397

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC ++ +A+ +F+  E+ D VS   I+    QN   E+ +    +M+++G+E D    
Sbjct: 398 YGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTY 457

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            +VL       SL  G  +H   IKS    + FV++ +++MY KCG + ++ K+  R+  
Sbjct: 458 GSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGG 517

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  VSWNS+I+ F+      +A   + EM   GV+P   T+ ++L  C+++  +  G + 
Sbjct: 518 QELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQI 577

Query: 482 LKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
              + +   +    + Y  + +VDM  + G + ++    E+   K D + W A++   ++
Sbjct: 578 HGQIIKQEML---GDEYISSTLVDMYAKCGNMPDSLLMFEKAR-KLDFVSWNAMICGYAL 633

Query: 540 HG 541
           HG
Sbjct: 634 HG 635



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 137/307 (44%), Gaps = 40/307 (13%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G +   + ++L  + A +G  AL  G+  H  +          + + L+ MY++CG    
Sbjct: 13  GFVATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAH 72

Query: 311 AWQIFEFAEELDGVSMTVILV-------------------------------GFAQNGFE 339
           A  +F+     D VS   +L                                G+ Q+G  
Sbjct: 73  AHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMF 132

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
             ++ L ++M + G+ +D   ++ +L   G    L LG QIH+L +K+   ++    + L
Sbjct: 133 RNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSAL 192

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY KC  L+D+++ F  M  RNSVSW + IA   ++    + +EL+ +M+  G+  + 
Sbjct: 193 VDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQ 252

Query: 460 VTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
             + S   +C+ +  ++   +     +K++    R+   A     +VD+  +AG L++AR
Sbjct: 253 PAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTA-----IVDVYAKAGNLVDAR 307

Query: 516 SFIERMP 522
                +P
Sbjct: 308 RAFIGLP 314



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 120/308 (38%), Gaps = 57/308 (18%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           ++L  G+  H+ ++ S F    FV+N L+ MY++CG    +  VF  M  R++VSWN+M+
Sbjct: 33  SALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTML 92

Query: 432 AAFARHGNGFKALELYE-------------------------------EMKLEGVEPTDV 460
            A+   G+   A  L+                                EM   GV     
Sbjct: 93  TAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRT 152

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEA 514
           T   LL +C        G++ L    ++H ++ +          + +VDM G+   L +A
Sbjct: 153 TLAVLLKSCG-------GLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDA 205

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMG-----KYAAEKLFLAQPDSPAPYILMAN 569
             F   M  +  V  W A +  C  +     G     +     L ++QP   + +   A 
Sbjct: 206 LRFFHGMGERNSV-SWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAA 264

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM-----HPQADTIH 624
           +   S   +  A AIK +     D+  G + +++  +  + V   +      H   +T +
Sbjct: 265 MPCLSTARQLHAHAIKNV--FSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCN 322

Query: 625 GVLAELLR 632
            ++  L+R
Sbjct: 323 AMMVGLVR 330


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 190/564 (33%), Positives = 320/564 (56%), Gaps = 3/564 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +    ++ N LLS Y K + + +  ++FD M +RD VSWNTM+ G+ + G ++     F 
Sbjct: 247 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 306

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             +    ++ D  + T IL AC         K +H  +   GYE + T  N LI  Y KC
Sbjct: 307 EMVNQ--FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 364

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G+  + ++VF  M+ ++ ++W ++I+  +QN  ++E +KLF KM    + P+S+TY+  +
Sbjct: 365 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLL 423

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              + L  L  G+++H  L K+   S++ + + L+DMY+KCG + D+ ++FE  +  D +
Sbjct: 424 SMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDII 483

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +   I+     +      +++  +M   G+  D   + ++L V  +  +   GK+IH  I
Sbjct: 484 TWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCI 543

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            K    S+  V N LI MYSKCG L +S +VF  M  ++ V+W ++I+A   +G G KA+
Sbjct: 544 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 603

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             + EM+  G+ P  V F++++ ACSH GLV +G+ +   M + ++I PR EHYACVVD+
Sbjct: 604 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 663

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + R+ LL +A  FI  MP+KPD  +W ALL AC + GD+E+ +  +E++    PD    Y
Sbjct: 664 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYY 723

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+  G+W +     K +K  G+ K+ G SW+EI+ +V+ F    K   Q + ++
Sbjct: 724 VLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVN 783

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
            +L  L  LM  EGY+ N +F+LH
Sbjct: 784 KLLGMLAGLMAKEGYIANLQFVLH 807



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 159/506 (31%), Positives = 271/506 (53%), Gaps = 18/506 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L+  Y + + +  A K+F++MP+RD VSWN+++SG+  NG ++     + R   LG
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLG 211

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + + +L AC          +IH L+   G +++V V N L++ Y K      G
Sbjct: 212 VVP-DSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDG 270

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F +M +R+ ++W  +I G  Q  LYEE +KLF++M +    P+ LT  S + AC  L
Sbjct: 271 RRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKPDLLTITSILQACGHL 329

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ +H  +     + D    + L++MY+KCG++  + ++F   +  D VS   ++
Sbjct: 330 GDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMI 389

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKS 387
             + QNG  +EAM+LF KM+K   ++ P+ V+ V+ +  + T LG   LGK++H  + K 
Sbjct: 390 NVYIQNGSFDEAMKLF-KMMKT--DVKPDSVTYVM-LLSMSTQLGDLHLGKELHCDLAKM 445

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SN  V+N L++MY+KCG++ DS+KVF  M  R+ ++WN++IA+     +    L + 
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 505

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EGV P   T LS+L  CS +    +G E    + ++  +         +++M  +
Sbjct: 506 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLG-LESDVPVGNVLIEMYSK 564

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYI 565
            G L  +    + M  K DV+ W AL+ AC ++G+ +    A  ++  A   PD  A   
Sbjct: 565 CGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVA--- 620

Query: 566 LMANIYSC--SGRWKERAKAIKRMKE 589
            +A I++C  SG  +E      RMK+
Sbjct: 621 FVAIIFACSHSGLVEEGLNYFHRMKK 646



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P  +   WN+++     NG F      +  +  +   Q D  +F  +++AC       ++
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRL-QPDTYTFPSVINACAGLLDFEMA 134

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  V   G+  ++ +GNALI  Y +       RKVF EM +R+V++W ++ISG   N
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 236 QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
             + E L+++ +  +LG++ P+S T  S + AC GL ++ EG  IHG++ K+ ++ D+ +
Sbjct: 195 GYWNEALEIYYRFRNLGVV-PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIV 253

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + L+ MY K   + D  +IF+     D VS   ++ G++Q G  EE+++LF++MV    
Sbjct: 254 NNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN--- 310

Query: 355 EIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           +  P++  ++++L   G    L  GK +H  +I S +  +   +N LINMY+KCG+L  S
Sbjct: 311 QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLAS 370

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +VFS M  ++SVSWNSMI  + ++G+  +A++L++ MK + V+P  VT++ LL   + +
Sbjct: 371 QEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQL 429

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G ++ G E    + ++   +        +VDM  + G + ++    E M  + D++ W  
Sbjct: 430 GDLHLGKELHCDLAKMG-FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNT 487

Query: 533 LLGACSIHGDSEMG 546
           ++ +C    D  +G
Sbjct: 488 IIASCVHSEDCNLG 501



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 201/426 (47%), Gaps = 27/426 (6%)

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           Q  F+ I  A   +  +     +H L+   G    V     LI  Y      +S   VF 
Sbjct: 13  QTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFR 72

Query: 216 -EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
                 NV  W ++I  L  N L+ E L L+ +     + P++ T+ S + AC+GL    
Sbjct: 73  LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFE 132

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             + IH  +  +   SDL I +AL+DMY +   ++ A ++FE     D VS   ++ G+ 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            NG+  EA++++ +    G+  D   +S+VL   G   S+  G  IH LI K     +  
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVI 252

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           VNNGL++MY K   L D  ++F +M  R++VSWN+MI  +++ G   ++++L+ EM +  
Sbjct: 253 VNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQ 311

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVDMVGR 507
            +P  +T  S+L AC H+G     +EF K + +    S     Y C       +++M  +
Sbjct: 312 FKPDLLTITSILQACGHLG----DLEFGKYVHDYMITSG----YECDTTASNILINMYAK 363

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDSPA 562
            G L+ ++     M  K D + W +++     +G  +     A KLF       +PDS  
Sbjct: 364 CGNLLASQEVFSGMKCK-DSVSWNSMINVYIQNGSFD----EAMKLFKMMKTDVKPDSVT 418

Query: 563 PYILMA 568
             +L++
Sbjct: 419 YVMLLS 424



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 164/339 (48%), Gaps = 23/339 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS+S + G  HLG  LH    K    F N N+       V+ N+L+  Y KC +M +++
Sbjct: 422 LLSMSTQLGDLHLGKELHCDLAKM--GF-NSNI-------VVSNTLVDMYAKCGEMGDSL 471

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F++M  RD ++WNT+++  + + + ++G     R    G    D A+   IL  C   
Sbjct: 472 KVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTP-DMATMLSILPVCSLL 530

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 K IH  ++  G E +V VGN LI  Y KCGS  +  +VF  M+ ++V+TWTA+I
Sbjct: 531 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 590

Query: 230 SGLVQNQLYEEG---LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWK 285
           S      +Y EG   ++ F +M    I P+ + +++ + ACS    + EG    H +   
Sbjct: 591 SAC---GMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKD 647

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             ++  +   + ++D+ S+   ++ A   I     + D      +L     +G  E A +
Sbjct: 648 YKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAER 707

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +  ++    IE++P+     + V  +  +LG   Q+ S+
Sbjct: 708 VSERI----IELNPDDTGYYVLVSNIYAALGKWDQVRSI 742


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/583 (32%), Positives = 326/583 (55%), Gaps = 11/583 (1%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            + G  LHA  IK              +  V+  +++  Y K + + +A + F  +P   
Sbjct: 308 LNTGRQLHAHAIKN----------KFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHT 357

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             + N M+ G +R G      G F+  +     + D  S + + SAC  ++     + +H
Sbjct: 358 VETSNAMMVGLVRAGLGIEAMGLFQFMIRSSI-RFDVVSLSGVFSACAETKGYFQGQQVH 416

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           CL    G++ ++ V NA++  Y KC +      +F  M+ ++ ++W A+I+ L QN  Y+
Sbjct: 417 CLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYD 476

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + +  F +M    + P+  TY S + AC+ L++L  G  +H  + K  L SD  + S ++
Sbjct: 477 DTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVV 536

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KCG +++A ++ +       VS   IL GF+ N   EEA + F +M+  G++ D  
Sbjct: 537 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 596

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + VL       ++ LGKQIH  IIK +   + ++++ L++MY+KCGD+ DS+ VF ++
Sbjct: 597 TFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKV 656

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ VSWN+MI  +A HG G +AL ++E M+ E V P   TF+++L ACSHVGL + G 
Sbjct: 657 EKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGC 716

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +   MT  +++ P+ EH+AC+VD++GR+    EA  FI  MP + D ++W+ LL  C I
Sbjct: 717 RYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKI 776

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
             D E+ + AA  + L  PD  + YIL++N+Y+ SG+W + ++  + +K+  + KE G S
Sbjct: 777 RQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCS 836

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           WIE++ ++H F+V DK HP++  ++ +L +L+  M   GY P+
Sbjct: 837 WIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMKLSGYEPD 879



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 159/534 (29%), Positives = 261/534 (48%), Gaps = 38/534 (7%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L+ Y     +  AV LFD MP  D VSWN +VSG+ + G F      F     
Sbjct: 125 TVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMAR 184

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D+ +F ++L +C   E   +   +H L    G E +V  G+AL+  Y KC S  
Sbjct: 185 RGVSP-DRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH---LGLINPNSLTYLSSVM 265
                F  M  RN ++W A I+G VQN+ Y  GL+LF++M    LG+  P   +Y S+  
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP---SYASAFR 300

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ +  L  GRQ+H    K    SD  + +A++D+Y+K  S+ DA + F         +
Sbjct: 301 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVET 360

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++VG  + G   EAM LF  M+++ I  D   +S V            G+Q+H L I
Sbjct: 361 SNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAI 420

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS F  +  VNN ++++Y KC  L ++  +F  M  ++SVSWN++IAA  ++G+    + 
Sbjct: 421 KSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTIL 480

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            + EM   G++P D T+ S+L AC+ +  +  G+     + +   +   A   + VVDM 
Sbjct: 481 HFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMY 539

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPA 562
            + G++ EA+   +R+  +  V+ W A+L   S++ +SE     A+K F    D    P 
Sbjct: 540 CKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESE----EAQKFFSEMLDMGLKPD 594

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            +     + +C+                       ++ IE+ KQ+H  ++  +M
Sbjct: 595 HFTFATVLDTCA----------------------NLATIELGKQIHGQIIKQEM 626



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 240/494 (48%), Gaps = 18/494 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L S SA E    LG  +HA  +KT    D +            ++L+  Y KC  + +A+
Sbjct: 198 LKSCSALE-ELSLGVQVHALAVKTGLEIDVRT----------GSALVDMYGKCRSLDDAL 246

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             F  MP R+ VSW   ++G ++N ++  G   F     LG   + Q S+     +C   
Sbjct: 247 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGL-GVSQPSYASAFRSCAAM 305

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + +H       +  +  VG A++  Y K  S +  R+ F  +    V T  A++
Sbjct: 306 SCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMM 365

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            GLV+  L  E + LF  M    I  + ++      AC+  +   +G+Q+H +  K    
Sbjct: 366 VGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFD 425

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            D+C+ +A++D+Y KC ++ +A+ IF+  ++ D VS   I+    QNG  ++ +  F +M
Sbjct: 426 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 485

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++ G++ D     +VL       SL  G  +H  +IKS   S+ FV + +++MY KCG +
Sbjct: 486 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 545

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           +++ K+  R+  +  VSWN++++ F+ +    +A + + EM   G++P   TF ++L  C
Sbjct: 546 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 605

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           +++  +  G +    + +   +    + Y  + +VDM  + G + ++    E++  K D 
Sbjct: 606 ANLATIELGKQIHGQIIKQEMLD---DEYISSTLVDMYAKCGDMPDSLLVFEKVE-KRDF 661

Query: 528 LVWQALLGACSIHG 541
           + W A++   ++HG
Sbjct: 662 VSWNAMICGYALHG 675



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 45/191 (23%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN---- 439
           ++ S F    FV+N L+ MY++C     + +VF  M  R++VSWN+M+ A++  G+    
Sbjct: 85  MVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTA 144

Query: 440 --------------------GF-------KALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
                               G+       ++++L+ EM   GV P   TF  LL +CS  
Sbjct: 145 VALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS-- 202

Query: 473 GLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
                 +E L    +VH ++ +          + +VDM G+   L +A  F   MP + +
Sbjct: 203 -----ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-N 256

Query: 527 VLVWQALLGAC 537
            + W A +  C
Sbjct: 257 WVSWGAAIAGC 267


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 311/558 (55%), Gaps = 1/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y  C  + +A  +FD +  +D V+W  MVS +  N   +     F +    G
Sbjct: 185 VGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTG 244

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F + +    T  L A      +L+ K IH       Y+ E  VG AL+  Y KCG     
Sbjct: 245 F-KPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDA 303

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F  +   +VI W+ +IS   Q+   E+  ++F++M    + PN  +    + AC+ +
Sbjct: 304 HAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANI 363

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G QIH +  KL  +S+L + +ALMDMY+KC ++E++ +IF   ++ + VS   I+
Sbjct: 364 AFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTII 423

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VG+ Q+GF E+A+ +F +M  A +       S+VL      +S+    QIHSLI KS F 
Sbjct: 424 VGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFN 483

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  V N LI+ Y+KCG + D++KVF  +   + VSWNS+I+A+A HG    ALEL++ M
Sbjct: 484 NDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRM 543

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               ++  DVTF+SLL  C   GLVN+G+    SM   HRI P  EHY C+V ++GRAG 
Sbjct: 544 NKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGR 603

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI  +P  P  +VW+ALL +C +H +  +G+YAAEK+   +P     Y+L++N+
Sbjct: 604 LTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNM 663

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G   E A   K M+ +GV KE G+SW+EI+ +VH+F V    HP    I+ +L  L
Sbjct: 664 YAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWL 723

Query: 631 LRLMIDEGYVPNKRFILH 648
                 EGYVP+   +LH
Sbjct: 724 NLKASREGYVPDINVVLH 741



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/513 (29%), Positives = 263/513 (51%), Gaps = 12/513 (2%)

Query: 29  IQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA 88
           + D  +S +   LD+Y   +R L      G    G ++HA  ++         V  +   
Sbjct: 31  LDDELASLALPKLDSYA-CARFLQRCIARGDARAGRAVHARVVQ------RGGVAQLD-- 81

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T   N LL+FY K   +  A +LFD MP R+ VS+ T++ G+   GEF+     F+R L+
Sbjct: 82  TFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRR-LQ 140

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              ++++    T IL      +   ++  IH      G++    VG ALI +Y  CG+  
Sbjct: 141 REGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVC 200

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R VF  +  ++ +TWTA++S   +N + E  L  F KM +    PN     S++ A  
Sbjct: 201 HARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAV 260

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L +   G+ IHG   K    ++  +  AL+DMY+KCG +EDA  IFE     D +  + 
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSF 320

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  +AQ+   E+A ++F++M+++ +  +   +S VL        L LG+QIH+L IK  
Sbjct: 321 LISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLG 380

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           + S  FV N L++MY+KC ++E+S+++FS +   N VSWN++I  + + G    AL ++ 
Sbjct: 381 YESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFH 440

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+   +  T VTF S+L AC++   +   ++ + S+ E    +        ++D   + 
Sbjct: 441 EMRAAHMLSTQVTFSSVLRACANTSSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKC 499

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G + +A    E + V+ DV+ W +++ A ++HG
Sbjct: 500 GFIRDALKVFESI-VECDVVSWNSIISAYALHG 531



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N T++ NSL+  Y KC  +R+A+K+F+ +   D VSWN+++S +  +G        F R 
Sbjct: 484 NDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDR- 542

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           +     + +  +F  +LS C  + L
Sbjct: 543 MNKSDIKANDVTFVSLLSVCGSTGL 567


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 317/560 (56%), Gaps = 2/560 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ NSLL  Y K   +  A +LF+D+P RD+V++N +++G+ + G        F +  E+
Sbjct: 234 VVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEV 293

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G Y+  + +F  IL+A  + +     + +H  V  C +   V V NAL+  Y K      
Sbjct: 294 G-YRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVE 352

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F EM   + I++  +++    N   +E L+LF ++     +  +  + + +   + 
Sbjct: 353 ASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAI 412

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  GRQIH         S++ + ++L+DMY+KCG   +A +IF        V  T +
Sbjct: 413 SLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAM 472

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  + Q G  E+ ++LFV+M +A I  D    ++++       SL LGKQ+HS II S +
Sbjct: 473 ISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGY 532

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN F  + L++MY+KCG ++D++++F  M  RNSVSWN++I+A+A++G+G   L L+EE
Sbjct: 533 ISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEE 592

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G++P  V+ LS+L ACSH GLV +G+++  SMT ++++ P+ EHYA  +DM+ R G
Sbjct: 593 MVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGG 652

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMA 568
              EA   + +MP +PD ++W ++L +C IH + E+ K AA +LF +      APY+ M+
Sbjct: 653 RFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMS 712

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G W    K  K M+E GV K    SW+EI+ + H F  +DK HPQ   I   L 
Sbjct: 713 NIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLD 772

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL   M+ +GY P+    LH
Sbjct: 773 ELEEKMVKKGYKPDSSCALH 792



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 261/507 (51%), Gaps = 19/507 (3%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K F+   ++N+++        N+++  Y+K   +  A  LFD M  R  V+W  ++ G+ 
Sbjct: 122 KLFDEMPHKNIFST-------NTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYA 174

Query: 132 RNGEFDMGFGFFKRSLELGFYQLD--QASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           +N +F   FG F   +E+G + +D    S   +LS     +     + +H  V   GY+ 
Sbjct: 175 QNNQFREAFGLF---IEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDS 231

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
            + V N+L+ SY K  S     ++F ++  R+ +T+ A+++G  +     E + LF KM 
Sbjct: 232 TLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQ 291

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                P   T+ + + A   L  +  G+Q+HG + K     ++ + +AL+D YSK   V 
Sbjct: 292 EVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVV 351

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           +A ++F    E+DG+S  V++  +A NG  +E+++LF ++   G +      + +L +  
Sbjct: 352 EASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAA 411

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           +  +L +G+QIHS  I +D  S   V N L++MY+KCG+  ++ ++FS +A ++SV W +
Sbjct: 412 ISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTA 471

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI+++ + G     L+L+ EM+   +     T+ S++ AC+ +  +  G +    +    
Sbjct: 472 MISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSG 531

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            IS      A +VDM  + G + +A    + MPV+  V  W AL+ A + +GD +     
Sbjct: 532 YISNVFSGSA-LVDMYAKCGSIKDALQMFQEMPVRNSV-SWNALISAYAQNGDGDCTLRL 589

Query: 550 AEKLFLA--QPDSPAPYILMANIYSCS 574
            E++  +  QPDS +   L++ + +CS
Sbjct: 590 FEEMVRSGLQPDSVS---LLSILCACS 613



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            + + IIK+ F  N + +N L+  + + GDL  + K+F  M  +N  S N+MI  + + G
Sbjct: 87  HVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSG 146

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLL 466
           N  +A  L++ M     + T VT+  L+
Sbjct: 147 NLSEARTLFDSM----FQRTAVTWTMLI 170


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 316/559 (56%), Gaps = 2/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+LL+ Y +  +  +A  +F  M  RD +SWN+M++ ++++G+   G       L++G
Sbjct: 435 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 494

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              ++  +F   L+AC   E  + SK++H L+ + G+ + + VGNAL+T Y K G     
Sbjct: 495 -KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEA 553

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           +KV   M   + +TW A+I G  +N+   E +K +  +    I  N +T +S + ACS  
Sbjct: 554 KKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP 613

Query: 271 QALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             L + G  IH  +     +SD  ++++L+ MY+KCG +  +  IF+       ++   +
Sbjct: 614 DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAM 673

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +   A +G  EEA+++F +M   G+ +D    S  L        L  G+Q+H L+IK  F
Sbjct: 674 VAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGF 733

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  V N  ++MY KCG++ D +K+  +   R+ +SWN +I+AFARHG   KA E + E
Sbjct: 734 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 793

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G +P  VTF+SLL AC+H GLV++G+ +  SMT    + P  EH  C++D++GR+G
Sbjct: 794 MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSG 853

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L  A  FI+ MPV P+ L W++LL AC IHG+ E+ +  AE L    P   + Y+L +N
Sbjct: 854 RLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSN 913

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           + + SG+W++     K M    + K+   SW++++ +VHSF + +K HPQA  I   L E
Sbjct: 914 VCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGE 973

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L+++  + GYVP+  F LH
Sbjct: 974 LMKMTKEAGYVPDTSFALH 992



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 249/494 (50%), Gaps = 25/494 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y K   + +A  +FD+M  R+  SW+TM+SG++R G ++   G F +   LG  
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-- 190

Query: 153 QLDQASFTI--ILSACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            ++   F +  +++AC RS  ++     +H  V   G   +V VG AL+  Y   G   +
Sbjct: 191 -VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 249

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F EM   NV++WT+++ G   +    E L ++ +M    ++ N  T+ +   +C  
Sbjct: 250 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 309

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+    G Q+ G + +   +  + + ++L+ M+S   SVE+A  +F+   E D +S   +
Sbjct: 310 LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAM 369

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  +A +G   E+++ F  M     E +   +S++L V     +L  G+ IH L++K   
Sbjct: 370 ISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 429

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN  + N L+ +YS+ G  ED+  VF  M  R+ +SWNSM+A + + G     L++  E
Sbjct: 430 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 489

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVD 503
           +   G     VTF S L ACS+        E L     VH +   A  +        +V 
Sbjct: 490 LLQMGKVMNHVTFASALAACSNP-------ECLIESKIVHALIIVAGFHDFLIVGNALVT 542

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-PA 562
           M G+ G+++EA+  ++ MP +PD + W AL+G    H ++E    A +   L +    PA
Sbjct: 543 MYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG---HAENEEPNEAVKAYKLIREKGIPA 598

Query: 563 PYILMANIY-SCSG 575
            YI M ++  +CS 
Sbjct: 599 NYITMVSVLGACSA 612



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 233/467 (49%), Gaps = 18/467 (3%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   ++  + NSL+S +     +  A  +FD M   D +SWN M+S +  +G        
Sbjct: 326 YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRC 385

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F     L   + +  + + +LS C   +     + IH LV   G +  V + N L+T Y 
Sbjct: 386 FHWMRHL-HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS 444

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYL 261
           + G S     VF  M  R++I+W ++++  VQ+    +GLK+  + + +G +  N +T+ 
Sbjct: 445 EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV-MNHVTFA 503

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ ACS  + L E + +H ++        L + +AL+ MY K G + +A ++ +   + 
Sbjct: 504 SALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQP 563

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-DTSLGLGKQI 380
           D V+   ++ G A+N    EA++ +  + + GI  +   + +VLG     D  L  G  I
Sbjct: 564 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 623

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ I+ + F S+ +V N LI MY+KCGDL  S  +F  +  ++ ++WN+M+AA A HG G
Sbjct: 624 HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCG 683

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF------LKSMTEVHRISPR 494
            +AL+++ EM+  GV     +F   L A +++ ++ +G +       L   +++H  +  
Sbjct: 684 EEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA- 742

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                  +DM G+ G + +    + + P+    L W  L+ A + HG
Sbjct: 743 ------AMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISAFARHG 782



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 222/457 (48%), Gaps = 8/457 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+ FY     + NA KLF++MP  + VSW +++ G+  +G        ++R  + G
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 292

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +Q +F  + S+C   E  ++   +   +   G+E+ V+V N+LI+ +    S    
Sbjct: 293 VSG-NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 351

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  M   ++I+W A+IS    + L  E L+ F  M       NS T  S +  CS +
Sbjct: 352 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSV 411

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  GR IHG++ KL L S++CI + L+ +YS+ G  EDA  +F+   E D +S   ++
Sbjct: 412 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 471

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+G   + +++  ++++ G  ++    ++ L        L   K +H+LII + F 
Sbjct: 472 ACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFH 531

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               V N L+ MY K G + ++ KV   M   + V+WN++I   A +    +A++ Y+ +
Sbjct: 532 DFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLI 591

Query: 451 KLEGVEPTDVTFLSLLHACSHV-GLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGR 507
           + +G+    +T +S+L ACS    L+  GM        +      ++ Y    ++ M  +
Sbjct: 592 REKGIPANYITMVSVLGACSAPDDLLKHGMPI---HAHIVLTGFESDDYVKNSLITMYAK 648

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G L  +    + +  K  +  W A++ A + HG  E
Sbjct: 649 CGDLNSSNYIFDGLGNKSPI-TWNAMVAANAHHGCGE 684



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N V+  L  F   TS   GK +H+  I        F  N LINMYSK G++E +  VF  
Sbjct: 95  NAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDE 154

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-LVNK 477
           M  RN  SW++M++ + R G   +A+ L+ +M   GVEP      SL+ ACS  G + ++
Sbjct: 155 MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE 214

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G +    + +   +       A +V   G  GL+  A+   E MP   +V+ W +L+   
Sbjct: 215 GFQVHGFVVKTGILGDVYVGTA-LVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVGY 272

Query: 538 SIHGD 542
           S  G+
Sbjct: 273 SDSGN 277


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 319/585 (54%), Gaps = 11/585 (1%)

Query: 64  PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
           PSLH   IK          + +     + N+LL  Y K   +  A ++F +M  +D V++
Sbjct: 155 PSLHPFAIK----------FGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY 204

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N M+ G  + G        F      G       +F+ IL+        L+   +H LV 
Sbjct: 205 NAMMMGCSKEGLHTQALQLFAAMRRAGI-PATHFTFSSILTVAAGMAHLLLGHQVHALVL 263

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
                  V V N+L+  Y KC      R++F EM  R+ +++  +I+    NQ     L+
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLR 323

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF +M     +   L Y + +     L  +  G+QIH  L  L L S+  + +AL+DMYS
Sbjct: 324 LFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS 383

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG ++ A   F    E   +S T ++ G+ QNG  EEA+QLF  M +AG+  D    S+
Sbjct: 384 KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSS 443

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           ++        +GLG+Q+HS +I+S + S+ F  + L++MY+KCG L+++++ F  M  RN
Sbjct: 444 IIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERN 503

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           S+SWN++I+A+A +G    A++++E M   G  P  VTFLS+L ACSH GL ++ M++  
Sbjct: 504 SISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFH 563

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            M   + ISP  EHYACV+D +GR G   + +  +  MP K D ++W ++L +C IHG+ 
Sbjct: 564 LMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E+ + AA+KLF  +P    PY++++NIY+ +G+W++ A   K M++ GV KE+G SW+EI
Sbjct: 624 ELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +++++SF  +D   P  D I   L  L + M  +GY P+    LH
Sbjct: 684 KQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH 728



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 168/350 (48%), Gaps = 7/350 (2%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N ++++Y   G   + + +F     RN  TWT ++          + L LF  M    + 
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+ +T +++V+   G    C    +H    K  L + + + + L+D Y K G +  A ++
Sbjct: 138 PDRVT-VTTVLNLPG----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F    + D V+   +++G ++ G   +A+QLF  M +AGI       S++L V      L
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LG Q+H+L+++S    N FVNN L++ YSKC  L+D  ++F  M  R++VS+N +IAA+
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A +      L L+ EM+  G +   + + ++L     +  V+ G +    +  +   S  
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               A ++DM  + G+L  A+S       K   + W AL+     +G  E
Sbjct: 373 LLGNA-LIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITGYVQNGQHE 420



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 22/197 (11%)

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQI---HSLIIKSDFTSNPFVN----NGLINMYSKCGD 408
           +D  MV     V     +LGL   +   H    ++ F   P  N    N +++ YS  GD
Sbjct: 30  LDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGD 89

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH- 467
           L  +  +F     RN+ +W  M+ A A  G    AL L+  M  EGV P  VT  ++L+ 
Sbjct: 90  LPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL 149

Query: 468 -ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVK 524
             C+   L    ++F    T V         + C  ++D   + GLL  AR     M  K
Sbjct: 150 PGCTVPSLHPFAIKFGLD-THV---------FVCNTLLDAYCKHGLLAAARRVFLEMHDK 199

Query: 525 PDVLVWQALLGACSIHG 541
            D + + A++  CS  G
Sbjct: 200 -DAVTYNAMMMGCSKEG 215


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 316/559 (56%), Gaps = 2/559 (0%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            I N+LL+ Y +  +  +A  +F  M  RD +SWN+M++ ++++G+   G       L++G
Sbjct: 1085 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 1144

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               ++  +F   L+AC   E  + SK++H L+ + G+ + + VGNAL+T Y K G     
Sbjct: 1145 -KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEA 1203

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +KV   M   + +TW A+I G  +N+   E +K +  +    I  N +T +S + ACS  
Sbjct: 1204 KKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAP 1263

Query: 271  QALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L + G  IH  +     +SD  ++++L+ MY+KCG +  +  IF+       ++   +
Sbjct: 1264 DDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAM 1323

Query: 330  LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
            +   A +G  EEA+++F +M   G+ +D    S  L        L  G+Q+H L+IK  F
Sbjct: 1324 VAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGF 1383

Query: 390  TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             S+  V N  ++MY KCG++ D +K+  +   R+ +SWN +I+AFARHG   KA E + E
Sbjct: 1384 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 1443

Query: 450  MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
            M   G +P  VTF+SLL AC+H GLV++G+ +  SMT    + P  EH  C++D++GR+G
Sbjct: 1444 MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSG 1503

Query: 510  LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
             L  A  FI+ MPV P+ L W++LL AC IHG+ E+ +  AE L    P   + Y+L +N
Sbjct: 1504 RLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSN 1563

Query: 570  IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
            + + SG+W++     K M    + K+   SW++++ +VHSF + +K HPQA  I   L E
Sbjct: 1564 VCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGE 1623

Query: 630  LLRLMIDEGYVPNKRFILH 648
            L+++  + GYVP+  F LH
Sbjct: 1624 LMKMTKEAGYVPDTSFALH 1642



 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/513 (34%), Positives = 281/513 (54%), Gaps = 2/513 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+ FY+K   +  A  +FD MP R  VSW  MVSG+ +NG F+  F  F      G  + 
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGV-KA 129

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +Q ++   L AC       +   +   +    + E + V +AL+  + KCG       +F
Sbjct: 130 NQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLF 189

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
           G M  R+V++W A+I G       ++   +F  M  G + P+  T  S + A +    L 
Sbjct: 190 GTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLI 249

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
              QIHGI+ +L   S   +   L++ Y+K GS+  A  + +   + D  S T ++ G+A
Sbjct: 250 IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYA 309

Query: 335 QNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
             G +  +A+ LF +M +  I +D  ++ ++L +     S  LG QIH+  +K   + + 
Sbjct: 310 HEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDV 369

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            + N LI+MY+K G++ED+ + F  M  +N +SW S+I+ +A+HG G  A+ LY++M+ +
Sbjct: 370 AMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESK 429

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G +P DVTFLSLL ACSH GL  +G E   +M   + I PRAEHY+C+VD+  R GLL E
Sbjct: 430 GFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEE 489

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A + + ++ +K +  +W A+LGA SI+G   +GK AA  LF  QP++   Y+++A+IYS 
Sbjct: 490 AYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSA 549

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           +G W +  K  K M+E    K  G S+ +  K+
Sbjct: 550 AGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 249/493 (50%), Gaps = 25/493 (5%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            N+L++ Y K   + +A  +FD+M  R+  SW+TM+SG++R G ++   G F +   LG  
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG-- 840

Query: 153  QLDQASFTI--ILSACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             ++   F +  +++AC RS  ++     +H  V   G   +V VG AL+  Y   G   +
Sbjct: 841  -VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 899

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +K+F EM   NV++WT+++ G   +    E L ++ +M    ++ N  T+ +   +C  
Sbjct: 900  AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 959

Query: 270  LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            L+    G Q+ G + +   +  + + ++L+ M+S   SVE+A  +F+   E D +S   +
Sbjct: 960  LEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAM 1019

Query: 330  LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
            +  +A +G   E+++ F  M     E +   +S++L V     +L  G+ IH L++K   
Sbjct: 1020 ISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGL 1079

Query: 390  TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             SN  + N L+ +YS+ G  ED+  VF  M  R+ +SWNSM+A + + G     L++  E
Sbjct: 1080 DSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAE 1139

Query: 450  MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVD 503
            +   G     VTF S L ACS+        E L     VH +   A  +        +V 
Sbjct: 1140 LLQMGKVMNHVTFASALAACSNP-------ECLIESKIVHALIIVAGFHDFLIVGNALVT 1192

Query: 504  MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-PA 562
            M G+ G+++EA+  ++ MP +PD + W AL+G    H ++E    A +   L +    PA
Sbjct: 1193 MYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG---HAENEEPNEAVKAYKLIREKGIPA 1248

Query: 563  PYILMANIY-SCS 574
             YI M ++  +CS
Sbjct: 1249 NYITMVSVLGACS 1261



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 233/467 (49%), Gaps = 18/467 (3%)

Query: 83   YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
            Y   ++  + NSL+S +     +  A  +FD M   D +SWN M+S +  +G        
Sbjct: 976  YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRC 1035

Query: 143  FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
            F     L   + +  + + +LS C   +     + IH LV   G +  V + N L+T Y 
Sbjct: 1036 FHWMRHL-HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYS 1094

Query: 203  KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYL 261
            + G S     VF  M  R++I+W ++++  VQ+    +GLK+  + + +G +  N +T+ 
Sbjct: 1095 EAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV-MNHVTFA 1153

Query: 262  SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
            S++ ACS  + L E + +H ++        L + +AL+ MY K G + +A ++ +   + 
Sbjct: 1154 SALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQP 1213

Query: 322  DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-DTSLGLGKQI 380
            D V+   ++ G A+N    EA++ +  + + GI  +   + +VLG     D  L  G  I
Sbjct: 1214 DRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 1273

Query: 381  HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
            H+ I+ + F S+ +V N LI MY+KCGDL  S  +F  +  ++ ++WN+M+AA A HG G
Sbjct: 1274 HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCG 1333

Query: 441  FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF------LKSMTEVHRISPR 494
             +AL+++ EM+  GV     +F   L A +++ ++ +G +       L   +++H  +  
Sbjct: 1334 EEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA- 1392

Query: 495  AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                   +DM G+ G + +    + + P+    L W  L+ A + HG
Sbjct: 1393 ------AMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILISAFARHG 1432



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/423 (27%), Positives = 208/423 (49%), Gaps = 4/423 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD + +  IL  C   +      +IH  +   G+  ++ +   LI  Y K G   + R 
Sbjct: 27  RLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARN 86

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R+V++WTA++SG  QN  +E+   LF  M    +  N  TY S++ AC+ L+ 
Sbjct: 87  VFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRC 146

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G Q+ G + K     +L ++SAL+D +SKCG +EDA  +F    E D VS   ++ G
Sbjct: 147 LDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGG 206

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A  GF +++  +F  M++ G+  D   + +VL        L +  QIH +I +  + S 
Sbjct: 207 YAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSY 266

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG-NGFKALELYEEMK 451
             V   LIN Y+K G L  +  +   M  ++  S  ++I  +A  G     AL+L++EM 
Sbjct: 267 DIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMN 326

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
              +   DV   S+L+ C+++     G + + +    ++ S        ++DM  ++G +
Sbjct: 327 QMNIGMDDVILCSMLNICANLASFALGTQ-IHAFALKYQPSYDVAMGNALIDMYAKSGEI 385

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            +A+   + M  K +V+ W +L+   + HG   M     +K+  ++   P     ++ ++
Sbjct: 386 EDAKRAFDEMEEK-NVISWTSLISGYAKHGYGHMAVSLYKKM-ESKGFKPNDVTFLSLLF 443

Query: 572 SCS 574
           +CS
Sbjct: 444 ACS 446



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 222/457 (48%), Gaps = 8/457 (1%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +  +L+ FY     + NA KLF++MP  + VSW +++ G+  +G        ++R  + G
Sbjct: 883  VGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEG 942

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                +Q +F  + S+C   E  ++   +   +   G+E+ V+V N+LI+ +    S    
Sbjct: 943  VSG-NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 1001

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
              VF  M   ++I+W A+IS    + L  E L+ F  M       NS T  S +  CS +
Sbjct: 1002 CYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSV 1061

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
              L  GR IHG++ KL L S++CI + L+ +YS+ G  EDA  +F+   E D +S   ++
Sbjct: 1062 DNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMM 1121

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              + Q+G   + +++  ++++ G  ++    ++ L        L   K +H+LII + F 
Sbjct: 1122 ACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFH 1181

Query: 391  SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                V N L+ MY K G + ++ KV   M   + V+WN++I   A +    +A++ Y+ +
Sbjct: 1182 DFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLI 1241

Query: 451  KLEGVEPTDVTFLSLLHACSHV-GLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGR 507
            + +G+    +T +S+L ACS    L+  GM        +      ++ Y    ++ M  +
Sbjct: 1242 REKGIPANYITMVSVLGACSAPDDLLKHGMPI---HAHIVLTGFESDDYVKNSLITMYAK 1298

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             G L  +    + +  K  +  W A++ A + HG  E
Sbjct: 1299 CGDLNSSNYIFDGLGNKSPI-TWNAMVAANAHHGCGE 1334



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 145/280 (51%), Gaps = 1/280 (0%)

Query: 173  LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
            +  K +H    +      +   N LI  Y K G+    R VF EMR RN  +W+ ++SG 
Sbjct: 761  MAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 820

Query: 233  VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC-EGRQIHGILWKLALQSD 291
            V+  LYEE + LF +M    + PN     S + ACS    +  EG Q+HG + K  +  D
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGD 880

Query: 292  LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
            + + +AL+  Y   G V +A ++FE   + + VS T ++VG++ +G   E + ++ +M +
Sbjct: 881  VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 940

Query: 352  AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             G+  + N  + V    G+     LG Q+   II+  F  +  V N LI+M+S    +E+
Sbjct: 941  EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEE 1000

Query: 412  SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
            +  VF  M   + +SWN+MI+A+A HG   ++L  +  M+
Sbjct: 1001 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMR 1040



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 199/402 (49%), Gaps = 13/402 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++L+ F+ KC +M +A  LF  M  RD VSWN M+ G+   G  D  F  F+  L  G  
Sbjct: 170 SALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLV 229

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  +   +L A       +++  IH ++   GY     V   LI +Y K GS  S + 
Sbjct: 230 P-DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 288

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +   M  +++ + TA+I+G     +Y  + L LF +M+   I  + +   S +  C+ L 
Sbjct: 289 LRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLA 348

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           +   G QIH    K     D+ + +AL+DMY+K G +EDA + F+  EE + +S T ++ 
Sbjct: 349 SFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLIS 408

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKS 387
           G+A++G+   A+ L+ KM   G +  PN V+ +  +F   +  GL  +     ++++ K 
Sbjct: 409 GYAKHGYGHMAVSLYKKMESKGFK--PNDVTFLSLLFAC-SHTGLTAEGCECFNNMVNKY 465

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALEL 446
           +        + +++++++ G LE++  +  ++  +++ S W +++ A + +  G+ +L  
Sbjct: 466 NIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIY--GYMSLGK 523

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTE 487
                L  ++P + V ++ L    S  GL +   +  K M E
Sbjct: 524 EAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEE 565



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 3/185 (1%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N V+  L  F   TS   GK +H+  I        F  N LINMYSK G++E +  VF  
Sbjct: 745 NAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDE 804

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-LVNK 477
           M  RN  SW++M++ + R G   +A+ L+ +M   GVEP      SL+ ACS  G + ++
Sbjct: 805 MRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE 864

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G +    + +   +       A +V   G  GL+  A+   E MP   +V+ W +L+   
Sbjct: 865 GFQVHGFVVKTGILGDVYVGTA-LVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVGY 922

Query: 538 SIHGD 542
           S  G+
Sbjct: 923 SDSGN 927


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 319/585 (54%), Gaps = 11/585 (1%)

Query: 64  PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
           PSLH   IK          + +     + N+LL  Y K   +  A ++F +M  +D V++
Sbjct: 155 PSLHPFAIK----------FGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY 204

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N M+ G  + G        F      G       +F+ IL+        L+   +H LV 
Sbjct: 205 NAMMMGCSKEGLHTQALQLFAAMRRAGI-PATHFTFSSILTVAAGMAHLLLGHQVHALVL 263

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
                  V V N+L+  Y KC      R++F EM  R+ +++  +I+    NQ     L+
Sbjct: 264 RSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLR 323

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF +M     +   L Y + +     L  +  G+QIH  L  L L S+  + +AL+DMYS
Sbjct: 324 LFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS 383

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG ++ A   F    E   +S T ++ G+ QNG  EEA+QLF  M +AG+  D    S+
Sbjct: 384 KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSS 443

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           ++        +GLG+Q+HS +I+S + S+ F  + L++MY+KCG L+++++ F  M  RN
Sbjct: 444 IIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERN 503

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           S+SWN++I+A+A +G    A++++E M   G  P  VTFLS+L ACSH GL ++ M++  
Sbjct: 504 SISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFH 563

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            M   + ISP  EHYACV+D +GR G   + +  +  MP K D ++W ++L +C IHG+ 
Sbjct: 564 LMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E+ + AA+KLF  +P    PY++++NIY+ +G+W++ A   K M++ GV KE+G SW+EI
Sbjct: 624 ELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 683

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +++++SF  +D   P  D I   L  L + M  +GY P+    LH
Sbjct: 684 KQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH 728



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 168/350 (48%), Gaps = 7/350 (2%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N ++++Y   G   + + +F     RN  TWT ++          + L LF  M    + 
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 137

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+ +T +++V+   G    C    +H    K  L + + + + L+D Y K G +  A ++
Sbjct: 138 PDRVT-VTTVLNLPG----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 192

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F    + D V+   +++G ++ G   +A+QLF  M +AGI       S++L V      L
Sbjct: 193 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHL 252

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LG Q+H+L+++S    N FVNN L++ YSKC  L+D  ++F  M  R++VS+N +IAA+
Sbjct: 253 LLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 312

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A +      L L+ EM+  G +   + + ++L     +  V+ G +    +  +   S  
Sbjct: 313 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 372

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               A ++DM  + G+L  A+S       K   + W AL+     +G  E
Sbjct: 373 LLGNA-LIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITGYVQNGQHE 420



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 22/197 (11%)

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQI---HSLIIKSDFTSNPFVN----NGLINMYSKCGD 408
           +D  MV     V     +LGL   +   H    ++ F   P  N    N +++ YS  GD
Sbjct: 30  LDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGD 89

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH- 467
           L  +  +F     RN+ +W  M+ A A  G    AL L+  M  EGV P  VT  ++L+ 
Sbjct: 90  LPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNL 149

Query: 468 -ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVK 524
             C+   L    ++F     + H        + C  ++D   + GLL  AR     M  K
Sbjct: 150 PGCTVPSLHPFAIKF---GLDTHV-------FVCNTLLDAYCKHGLLAAARRVFLEMHDK 199

Query: 525 PDVLVWQALLGACSIHG 541
            D + + A++  CS  G
Sbjct: 200 -DAVTYNAMMMGCSKEG 215


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/491 (38%), Positives = 294/491 (59%), Gaps = 4/491 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL+ C +  L    K +H +V   G++    VGN++I  Y KCG      +VF  + VRN
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+W A+I+G    +  EE L LF +M      P+  TY SS+ ACS   A  EG QIH 
Sbjct: 70  VISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHA 129

Query: 282 ILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
            L +      +   +  AL+D+Y KC  + +A ++F+  EE   +S + +++G+AQ    
Sbjct: 130 ALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNL 189

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNG 398
           +EAM LF ++ ++   +D  ++S+++GVF     L  GKQ+H+  IK  +      V N 
Sbjct: 190 KEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANS 249

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +++MY KCG   ++  +F  M  RN VSW  MI  + +HG G KA+EL+ EM+  G+EP 
Sbjct: 250 VLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPD 309

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VT+L++L ACSH GL+ +G ++   +    +I P+ EHYAC+VD++GR G L EA++ I
Sbjct: 310 SVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLI 369

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E+MP+KP+V +WQ LL  C +HGD EMGK   E L   + ++PA Y++++N+Y+ +G WK
Sbjct: 370 EKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWK 429

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE- 637
           E  K  + +K  G+ KE G SW+E++K++H F   D MHP  + IH VL E+ + + +E 
Sbjct: 430 ESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEM 489

Query: 638 GYVPNKRFILH 648
           GYV +  F LH
Sbjct: 490 GYVHSINFSLH 500



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 196/395 (49%), Gaps = 19/395 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL--RNGEFDMGFGFFKRSL 147
           V+ NS++  Y KC  +  A ++F+ +P+R+ +SWN M++G+   RNGE       F+   
Sbjct: 40  VVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGE--EALNLFREMR 97

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYFKCG 205
           E G    D  +++  L AC  ++ +     IH  +   G  Y  +  V  AL+  Y KC 
Sbjct: 98  EKGEVP-DGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCR 156

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
             +  RKVF  +  ++V++W+ +I G  Q    +E + LF ++       +     S + 
Sbjct: 157 RMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIG 216

Query: 266 ACSGLQALCEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             +    L +G+Q+H    K+     ++ + ++++DMY KCG   +A  +F    E + V
Sbjct: 217 VFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVV 276

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S TV++ G+ ++G   +A++LF +M + GIE D     AVL        +  GK+  S I
Sbjct: 277 SWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFS-I 335

Query: 385 IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN-- 439
           + S+    P V +   ++++  + G L+++  +  +M  + +V  W ++++    HG+  
Sbjct: 336 LCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVE 395

Query: 440 -GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            G +  E+   ++ EG  P +   +S ++A  H G
Sbjct: 396 MGKQVGEIL--LRREGNNPANYVMVSNMYA--HAG 426



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 191/425 (44%), Gaps = 60/425 (14%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V D Y   S L + S  +     G  +HA+ I+   P+  Q        + +  +L+  Y
Sbjct: 102 VPDGYTYSSSLKACSCADAAGE-GMQIHAALIRHGFPYLAQ--------SAVAGALVDLY 152

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           +KC +M  A K+FD +  +  +SW+T++ G+ +          F R L    +++D    
Sbjct: 153 VKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLF-RELRESRHRMDGFVL 211

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           + I+       L    K +H       Y   E++V N+++  Y KCG +     +F EM 
Sbjct: 212 SSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREML 271

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV++WT +I+G  ++ +  + ++LF +M    I P+S+TYL+ + ACS    + EG++
Sbjct: 272 ERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKK 331

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
              IL                     C + +   ++  +A  +D       L+G  + G 
Sbjct: 332 YFSIL---------------------CSNQKIKPKVEHYACMVD-------LLG--RGGR 361

Query: 339 EEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
            +EA  L  KM      + PN  +   +L V  +   + +GKQ+  ++++ +  +NP   
Sbjct: 362 LKEAKNLIEKM-----PLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRRE-GNNPANY 415

Query: 397 NGLINMYSKCGDLEDSIKV--------FSRMAPRNSVSWNSMIAAFARHGNGFKAL--EL 446
             + NMY+  G  ++S K+          + A R+ V  +  I  F  +G+G   L  E+
Sbjct: 416 VMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFY-NGDGMHPLIEEI 474

Query: 447 YEEMK 451
           +E +K
Sbjct: 475 HEVLK 479


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 317/560 (56%), Gaps = 9/560 (1%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL---RNGEFDMGFGFFKRSLELG 150
           +L++ Y KC  + +A K+FD MP R   +WN+M+S +    R+GE    F  F+R    G
Sbjct: 50  ALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE---AFFIFQRMQHEG 106

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D+ +F  IL AC   E     K +   +    +E ++ VG ALIT Y +C S  + 
Sbjct: 107 -ERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENA 165

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VFG M+ +N+ITW+A+I+    +    E L+ F  M    I PN +T++S +   +  
Sbjct: 166 AQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTP 225

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKC--GSVEDAWQIFEFAEELDGVSMTV 328
             L E  +IH ++ +  L     + +AL+++Y +C  G ++ A  I +  +E    +  V
Sbjct: 226 SGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNV 285

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+  +G   EA++ + ++    I +D     +VL      TSL  GK IHS  ++  
Sbjct: 286 LINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG 345

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S+  V N L NMYSKCG +E++ ++F  M  R++VSWN M+ A+A+HG   + L+L  
Sbjct: 346 LDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIR 405

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+ EGV+   +TF+S+L +CSH GL+ +G ++  S+     I  + EHY C+VD++GRA
Sbjct: 406 KMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRA 465

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  +I +MP +P+++ W +LLGAC +H D + GK AA KL    P + +  ++++
Sbjct: 466 GKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLS 525

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS  G WK  AK  + M    V K  GIS I+++ +VH F V D  HP+A  I+  + 
Sbjct: 526 NIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVE 585

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL   M + GYVP+ + +LH
Sbjct: 586 ELCFAMREAGYVPDTKMVLH 605



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 193/373 (51%), Gaps = 8/373 (2%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  V    +  +V V  AL+ +Y KCGS +  RKVF  M  R+V TW ++IS    +
Sbjct: 30  KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 89

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           +   E   +F +M       + +T+LS + AC   + L  G+ +   + + + + DL + 
Sbjct: 90  ERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVG 149

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +AL+ MY++C S E+A Q+F   ++ + ++ + I+  FA +G   EA++ F  M + GI 
Sbjct: 150 TALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 209

Query: 356 IDPNMVSAVLGVFGVDTSLGLGK--QIHSLIIKSDFTSNPFVNNGLINMYSKC--GDLED 411
             PN V+ +  + G  T  GL +  +IH LI +        ++N L+N+Y +C  G+L+ 
Sbjct: 210 --PNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDV 267

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +   M  +   +WN +I  +  HG   +ALE Y+ ++LE +    VTF+S+L+AC+ 
Sbjct: 268 AEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTS 327

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
              + +G     +  E    S      A + +M  + G +  AR   + MP++  V  W 
Sbjct: 328 STSLAEGKMIHSNAVECGLDSDVIVKNA-LTNMYSKCGSMENARRIFDSMPIRSAV-SWN 385

Query: 532 ALLGACSIHGDSE 544
            +L A + HG+SE
Sbjct: 386 GMLQAYAQHGESE 398



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 176/354 (49%), Gaps = 7/354 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y +C    NA ++F  M  ++ ++W+ +++ F  +G       +F+   + G
Sbjct: 148 VGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEG 207

Query: 151 FYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC--GSS 207
               ++ +F  +L+     S L  +S+ IH L+   G ++  T+ NAL+  Y +C  G  
Sbjct: 208 ILP-NRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMSNALVNVYGRCETGEL 265

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                +  EM  + +  W  +I+G   +    E L+ + ++ L  I  + +T++S + AC
Sbjct: 266 DVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNAC 325

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +   +L EG+ IH    +  L SD+ +++AL +MYSKCGS+E+A +IF+       VS  
Sbjct: 326 TSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWN 385

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-IHSLIIK 386
            +L  +AQ+G  EE ++L  KM + G++++     +VL        +  G Q  HSL   
Sbjct: 386 GMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHD 445

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGN 439
                       L+++  + G L+++ K  S+M      V+W S++ A   H +
Sbjct: 446 RGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKD 499



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 168/355 (47%), Gaps = 13/355 (3%)

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M L  +  N +T+L+ + +     AL +G+ IH  + +     D+ + +AL++ Y+KCGS
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           + DA ++F+        +   ++  ++ +    EA  +F +M   G   D     ++L  
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                +L  GK +   I ++ F  + FV   LI MY++C   E++ +VF RM  +N ++W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS--- 484
           +++I AFA HG+  +AL  +  M+ EG+ P  VTF+SLL+  +       G+E L     
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT----TPSGLEELSRIHL 236

Query: 485 -MTEVHRISPRAEHYACVVDMVGR--AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +TE H +         +V++ GR   G L  A   ++ M  +  +  W  L+   ++HG
Sbjct: 237 LITE-HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLHG 294

Query: 542 DSEMGKYAAEKLFL-AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
            S       ++L L A P     +I + N  + S    E         E G+D +
Sbjct: 295 RSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSD 349



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 130/262 (49%), Gaps = 19/262 (7%)

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           + ++ VKA +    N++++V+       +L  GK IHS + +S+ + + FVN  L+N Y+
Sbjct: 1   MLLEGVKANVITFLNVLNSVVD----PDALRKGKFIHSCVRESEHSLDVFVNTALVNTYT 56

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG L D+ KVF  M  R+  +WNSMI+A++      +A  +++ M+ EG     VTFLS
Sbjct: 57  KCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLS 116

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMP 522
           +L AC +   +  G    +S++E    S   + +    ++ M  R      A     RM 
Sbjct: 117 ILDACVNPENLQHGKHVRESISET---SFELDLFVGTALITMYARCRSPENAAQVFGRMK 173

Query: 523 VKPDVLVWQALLGACSIHGD-SEMGKYAAEKLFLAQPDSPAP----YILMANIYSCSGRW 577
            K +++ W A++ A + HG   E  +Y      + Q +   P    +I + N ++     
Sbjct: 174 QK-NLITWSAIITAFADHGHCGEALRY----FRMMQQEGILPNRVTFISLLNGFTTPSGL 228

Query: 578 KERAKAIKRMKEMGVDKETGIS 599
           +E ++    + E G+D  T +S
Sbjct: 229 EELSRIHLLITEHGLDDTTTMS 250



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 4/170 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L + Y KC  M NA ++FD MP+R  VSWN M+  + ++GE +       R +E 
Sbjct: 351 IVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI-RKMEQ 409

Query: 150 GFYQLDQASFTIILSACDRSEL-SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +L+  +F  +LS+C  + L +   +  H L +  G E +      L+    + G   
Sbjct: 410 EGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQ 469

Query: 209 SGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
              K   +M     ++TW +++     ++  + G KL  +  L L   NS
Sbjct: 470 EAEKYISKMPSEPEIVTWASLLGACRVHKDLDRG-KLAARKLLELDPGNS 518


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 323/560 (57%), Gaps = 4/560 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + NSL++ Y K   + +A  LFD++   D VSWN+M++G + NG    G   F + L 
Sbjct: 230 TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI 289

Query: 149 LGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           LG  ++D  +   +L AC +   LSL  + +H       + EEV   N L+  Y KCG+ 
Sbjct: 290 LGV-EVDLTTLVSVLVACANIGNLSL-GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 347

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +   +VF +M    +++WT++I+  V+  LY + + LF +M    + P+  T  S V AC
Sbjct: 348 NGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 407

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +   +L +GR +H  + K  + S+L + +AL++MY+KCGSVE+A  +F      D VS  
Sbjct: 408 ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWN 467

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G++QN    EA++LF+ M K     D  M   +    G+  +L  G++IH  I++ 
Sbjct: 468 TMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGL-AALDKGREIHGHILRR 526

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            + S+  V   L++MY+KCG L  +  +F  +  ++ +SW  MIA +  HG G +A+  +
Sbjct: 527 GYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTF 586

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM++ G+EP + +F ++L+ACSH GL+N+G +F  SM     + P+ EHYACVVD++ R
Sbjct: 587 NEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLAR 646

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G L +A  FIE MP+KPD  +W  LL  C IH D ++ +  AE +F  +PD+   Y+++
Sbjct: 647 MGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 706

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           AN+Y+ + +W+E  K  KRM++ G  +  G SWIE+  + + FV  +  HPQA  I  +L
Sbjct: 707 ANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLL 766

Query: 628 AELLRLMIDEGYVPNKRFIL 647
           ++L   M +E Y    R++L
Sbjct: 767 SKLTMQMQNEDYSSMFRYVL 786



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/564 (27%), Positives = 280/564 (49%), Gaps = 23/564 (4%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           S + +L L++Y  +   L + A++     G  +H+  I      D            +  
Sbjct: 87  SKSYELGLNSYCSV---LQLCAEKKSLEDGKRVHSVIISNGISVDE----------ALGA 133

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
            L+  Y+ C  +    K+FD +       WN ++S + + G F      FK+  +LG   
Sbjct: 134 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 193

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            +  +FT +L            K +H  V   G+     V N+LI +YFK G   S   +
Sbjct: 194 -NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 252

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F E+   +V++W ++I+G V N     GL++F++M +  +  +  T +S ++AC+ +  L
Sbjct: 253 FDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNL 312

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GR +HG   K     ++   + L+DMYSKCG++  A ++F    +   VS T I+  +
Sbjct: 313 SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAY 372

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            + G   +A+ LF +M   G+  D   V++++      +SL  G+ +HS +IK+   SN 
Sbjct: 373 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 432

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N LINMY+KCG +E++  VFS++  ++ VSWN+MI  ++++    +ALEL+ +M+ +
Sbjct: 433 PVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ 492

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLI 512
             +P D+T   +L AC+ +  ++KG E    +      S    H AC +VDM  + GLL+
Sbjct: 493 -FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAKCGLLV 549

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
            A+   + +P K D++ W  ++    +H  G+  +  +   ++   +PD  + +  + N 
Sbjct: 550 LAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDE-SSFSAILNA 607

Query: 571 YSCSGRWKERAKAIKRMK-EMGVD 593
            S SG   E  K    M+ E GV+
Sbjct: 608 CSHSGLLNEGWKFFNSMRNECGVE 631



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 212/428 (49%), Gaps = 7/428 (1%)

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           F +     T + N  ++ F   G+         +S     Y+L   S+  +L  C   + 
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKS---YELGLNSYCSVLQLCAEKKS 109

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
               K +H ++   G   +  +G  L+  Y  CG    GRK+F ++    V  W  ++S 
Sbjct: 110 LEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSE 169

Query: 232 LVQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
             +   + E + LF KM  LG++  N  T+   +   + L  + E +++HG + KL   S
Sbjct: 170 YAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGS 228

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +  + ++L+  Y K G VE A  +F+   E D VS   ++ G   NGF    +++F++M+
Sbjct: 229 NTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQML 288

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             G+E+D   + +VL       +L LG+ +H   +K+ F+     +N L++MYSKCG+L 
Sbjct: 289 ILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLN 348

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + +VF +M     VSW S+IAA+ R G    A+ L++EM+ +GV P   T  S++HAC+
Sbjct: 349 GATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA 408

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
               ++KG + + S    + +         +++M  + G + EAR    ++PVK D++ W
Sbjct: 409 CSSSLDKGRD-VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSW 466

Query: 531 QALLGACS 538
             ++G  S
Sbjct: 467 NTMIGGYS 474


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 324/583 (55%), Gaps = 12/583 (2%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           LHA FI+T      Q++ +   + VI     S Y     +  A+ +F  +     ++W +
Sbjct: 27  LHAQFIRT------QSLSHTSASIVI-----SIYTNLKLLHEALLVFKTLESPPVLAWKS 75

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           ++  F     F      F      G    D   F  +L +C         + +H  +   
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASGRCP-DHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G + ++  GNAL+  Y K     S RKVF  M  ++V+++  VI+G  Q+ +YE+ L++ 
Sbjct: 135 GMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMV 194

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M    + P++ T  S +   S    + +G++IHG + +  + SD+ I S+L+DMY+K 
Sbjct: 195 REMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKS 254

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             +ED+ ++F      D +S   ++ G+ QNG   EA++LF +MV A +       S+V+
Sbjct: 255 ARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVI 314

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L LGKQ+H  +++  F  N F+ + L++MYSKCG+++ + K+F RM   + V
Sbjct: 315 PACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEV 374

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW ++I   A HG+G +A+ L+EEMK +GV+P  V F+++L ACSHVGLV++   +  SM
Sbjct: 375 SWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 434

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           T+V+ ++   EHYA V D++GRAG L EA  FI +M V+P   VW  LL +CS+H + E+
Sbjct: 435 TKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLEL 494

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
            +  AEK+F    ++   Y+LM N+Y+ +GRWKE AK   R+++ G+ K+   SWIE++ 
Sbjct: 495 AEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKN 554

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + H FV  D+ HP  D I+  L  ++  M  EGYV +   +LH
Sbjct: 555 KTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLH 597


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 332/587 (56%), Gaps = 22/587 (3%)

Query: 68  ASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           A+F  T EP    NV++       +N ++  Y K  ++  A +LFD+ P  DTVS+NT++
Sbjct: 64  AAFDSTEEP----NVFS-------YNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLI 112

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSACDRSELSLVSKMIHCLVYLCG 186
           SG+    E       FKR  ELGF ++D  + + +I + CDR +L    K +HC     G
Sbjct: 113 SGYADARETVAAMVLFKRMRELGF-EVDGFTLSGLIAACCDRVDLI---KQLHCFAVSGG 168

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLF 245
           ++   +V NA +T Y K G       VF  M  +R+ ++W ++I    Q++   + L L+
Sbjct: 169 FDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALY 228

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M       +  T  S + A + L  L  GRQ HG L K     +  + S L+D YSKC
Sbjct: 229 KEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKC 288

Query: 306 GS---VEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDPNMV 361
           G    + D+ ++F+     D V    ++ G++ N    EEA++ F +M + G   D    
Sbjct: 289 GGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSF 348

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMA 420
             V       +S   GKQIH L IKS+  SN   VNN LI++Y K G+L D+ +VF RM 
Sbjct: 349 VCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             N+VS+N MI  +A+HG+G +AL LY+ M   G+ P ++TF+++L AC+H G V++G +
Sbjct: 409 ELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQK 468

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  +M E  +I P AEHY+C++D++GRAG L EA  FI+ MP KP  + W ALLGAC  H
Sbjct: 469 YFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKH 528

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            +  + + AA++L + QP +  PY+++AN+Y+ +G+W+E A   K M+   + K+ G SW
Sbjct: 529 KNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSW 588

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           IE++K+ H FV +D  HP    ++  L E+++ M   GYV +K++ +
Sbjct: 589 IEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 200/462 (43%), Gaps = 56/462 (12%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
              K +H L           + N  +  Y KCG  S  R  F      NV ++  ++   
Sbjct: 25  FTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAY 84

Query: 233 VQN-------QLYEEGLKLFVKMHLGLINP-----------------NSLTYLSSVMACS 268
            ++       QL++E  +     +  LI+                    L +       S
Sbjct: 85  AKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLS 144

Query: 269 GLQALCEGR-----QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-D 322
           GL A C  R     Q+H         S   + +A +  YSK G + +A  +F   + L D
Sbjct: 145 GLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRD 204

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   ++V + Q+    +A+ L+ +M+  G +ID   +++VL        L  G+Q H 
Sbjct: 205 EVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHG 264

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCG---DLEDSIKVFSRMAPRNSVSWNSMIAAFA-RHG 438
            +IK+ F  N  V +GLI+ YSKCG    + DS KVF  +   + V WN+MI+ ++    
Sbjct: 265 KLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEE 324

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPR 494
           +  +A++ + +M+  G  P D +F+ +  ACS++   ++G +     +KS    +RIS  
Sbjct: 325 HSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVN 384

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
                 ++ +  ++G L++AR   +RMP         A+   C I G ++ G +  E L 
Sbjct: 385 ----NALISLYYKSGNLLDARRVFDRMP------ELNAVSFNCMIKGYAQHG-HGTEALR 433

Query: 555 LAQP--DS---PAPYILMANIYSCS--GRWKERAKAIKRMKE 589
           L Q   DS   P     +A + +C+  G+  E  K    MKE
Sbjct: 434 LYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKE 475



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 48/328 (14%)

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ +H +  K  + S   + +  +++YSKCG +  A   F+  EE +  S  VI+  
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKA 83

Query: 333 FAQNG--------FEEE-----------------------AMQLFVKMVKAGIEIDPNMV 361
           +A++         F+E                        AM LF +M + G E+D   +
Sbjct: 84  YAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTL 143

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-A 420
           S ++        + L KQ+H   +   F S   VNN  +  YSK G L +++ VF  M  
Sbjct: 144 SGLIA--ACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDG 201

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ VSWNSMI A+ +H  G KAL LY+EM  +G +    T  S+L+A + +  +  G +
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQ 261

Query: 481 FLKSMTEV------HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           F   + +       H  S   + Y+      GR G+    + F E +   PD+++W  ++
Sbjct: 262 FHGKLIKAGFHQNSHVGSGLIDFYS---KCGGRDGMSDSEKVFQEILS--PDLVLWNTMI 316

Query: 535 GACSI---HGDSEMGKYAAEKLFLAQPD 559
              S+   H +  +  +   +    +PD
Sbjct: 317 SGYSMNEEHSEEAVKSFRQMQRIGHRPD 344



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
            +  L  GK +H+L +KS   S+ +++N  +N+YSKCG L  +   F      N  S+N 
Sbjct: 20  AERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNV 79

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           ++ A+A+      A +L++    E  +P  V++ +L+   +        M   K M E+
Sbjct: 80  IVKAYAKDSKIHIARQLFD----ENPQPDTVSYNTLISGYADARETVAAMVLFKRMREL 134


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 212/611 (34%), Positives = 334/611 (54%), Gaps = 36/611 (5%)

Query: 63  GPSLHASFIKTFEP-------------------------FDNQNVYNVPNATVIWNSLLS 97
           G SLHA +IK+F P                         FD+ +  NV +    +N+L+S
Sbjct: 27  GKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNVFS----FNTLIS 82

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y K   +  A +LFD+MP  D+VS+NT+++ + R G+    F  F    E  F  +D  
Sbjct: 83  AYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMRE-AFLDMDGF 141

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           + + I++AC    + L+ + +H L  + G +  V+VGNALITSY K G     R++F  +
Sbjct: 142 TLSGIITACG-INVGLI-RQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWL 199

Query: 218 -RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+ ++W +++   +Q++   + L+L+++M +  +  +  T  S + A + +Q L  G
Sbjct: 200 SEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGG 259

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDGVSMTVILVGFA- 334
            Q H  L K     +  + S L+D+YSKCG  + D  ++F+     D V    ++ G++ 
Sbjct: 260 LQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSL 319

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
                +EA++ F ++   G   D   +  V+      +S   G+Q+H L +K D  SN  
Sbjct: 320 YEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRI 379

Query: 395 -VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            VNN LI MYSKCG+L D+  +F  M   N+VS+NSMIA +A+HG GF++L L++ M   
Sbjct: 380 SVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEM 439

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
              PT++TF+S+L AC+H G V  G  +   M +   I P A H++C++D++GRAG L E
Sbjct: 440 DFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSE 499

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   IE +P  P    W ALLGAC IHG+ E+   AA +L    P + APY+++ANIYS 
Sbjct: 500 AERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSD 559

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +GR ++ A   K M++ GV K+ G SWIE+ +++H FV +D  HP    I   L E++R 
Sbjct: 560 NGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRK 619

Query: 634 MIDEGYVPNKR 644
           +   GY P  R
Sbjct: 620 IKKVGYTPEVR 630



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 222/477 (46%), Gaps = 41/477 (8%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           SF   L  C         K +H L           + N  +  Y KC   S+ R+VF   
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 218 RVRNVITWTAVISGL-------VQNQLYEE------------------------GLKLFV 246
              NV ++  +IS         V +QL++E                          +LF+
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M    ++ +  T    + AC     L   RQ+H +     L S + + +AL+  YSK G
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 307 SVEDAWQIFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            +++A +IF + +E+ D VS   ++V + Q+    +A++L+++M   G+ +D   +++VL
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD-LEDSIKVFSRMAPRNS 424
             F     L  G Q H+ +IKS +  N  V +GLI++YSKCG  + D  KVF  ++  + 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 425 VSWNSMIAAFARHGN-GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           V WN+MI+ ++ + +   +ALE + +++  G  P D + + ++ ACS++   ++G +   
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
              ++   S R      ++ M  + G L +A++  + MP + + + + +++   + HG  
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQHGMG 426

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKERAKAIKRMKE-MGVDKETG 597
               +  +++ L    +P     ++ + +C  +GR ++       MK+  G++ E G
Sbjct: 427 FQSLHLFQRM-LEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAG 482


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/563 (33%), Positives = 316/563 (56%), Gaps = 1/563 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  V+   +++ Y  C    ++  +FD +  ++   WN +VS + RN  F+     F   
Sbjct: 139 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 198

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG- 205
           + +  ++ D  +   ++ AC       + ++IH +        +V VGNALI  Y KCG 
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 258

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
              + ++VF  M  + V +W A++ G  QN    + L L+++M    ++P+  T  S ++
Sbjct: 259 VEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLL 318

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           ACS +++L  G +IHG   +  L  D  I  +L+ +Y  CG    A  +F+  E    VS
Sbjct: 319 ACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVS 378

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             V++ G++QNG  +EA+ LF +M+  GI+     +  V G     ++L LGK++H   +
Sbjct: 379 WNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFAL 438

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+  T + FV++ +I+MY+K G +  S ++F R+  ++  SWN +IA +  HG G +ALE
Sbjct: 439 KAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALE 498

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+E+M   G++P D TF  +L ACSH GLV  G+E+   M  +H I P+ EHY CVVDM+
Sbjct: 499 LFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDML 558

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG + +A   IE MP  PD  +W +LL +C IHG+  +G+  A KL   +P+ P  Y+
Sbjct: 559 GRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYV 618

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+++ SG+W +  +   RMK++G+ K+ G SWIE+  +VH+F++ D+M P+ + +  
Sbjct: 619 LISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRE 678

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
               L   +   GY P+   +LH
Sbjct: 679 TWRRLEVKISSIGYTPDTGSVLH 701



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 218/417 (52%), Gaps = 14/417 (3%)

Query: 161 IILSACDRSELSLVSKMIHCLVYL-CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           ++L AC + +   V + +H +V     +  +  +   +IT Y  CGS S  R VF ++R 
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 169

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           +N+  W A++S   +N+L+E+ + +F ++  +    P++ T    + AC+GL  L  G+ 
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDA-WQIFEFAEELDGVSMTVILVGFAQNG 337
           IHG+  K+ L SD+ + +AL+ MY KCG VE+A  ++F+  +     S   +L G+AQN 
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              +A+ L+++M  +G++ D   + ++L       SL  G++IH   +++    +PF+  
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 349

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L+++Y  CG    +  +F  M  R+ VSWN MIA ++++G   +A+ L+ +M  +G++P
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            ++  + +  ACS +  +  G E      + H ++      + ++DM  + G +  ++  
Sbjct: 410 YEIAIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRI 468

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE------KLFLAQPDSPAPYILMA 568
            +R+  K DV  W  ++    IHG    GK A E      +L L   D     ILMA
Sbjct: 469 FDRLREK-DVASWNVIIAGYGIHG---RGKEALELFEKMLRLGLKPDDFTFTGILMA 521


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 203/597 (34%), Positives = 327/597 (54%), Gaps = 11/597 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+  ++  LS+SA E     G  LH   +K          Y + +   + N+L+S Y KC
Sbjct: 246 NFATLACFLSVSATESDLFFGVQLHTLAVK----------YGLESEVAVANTLVSMYAKC 295

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +  KLF  MP  D V+WN M+SG ++NG  D     F    + G  + D  +   +
Sbjct: 296 KCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI-RPDSVTLVSL 354

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L A          K +H  +       +V + +AL+  YFKC +    + V+   +  +V
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +  + +ISG V N + +E +K+F  +    I PN++   S + AC+ + A+  G+++H  
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K A +    +ESALMDMY+KCG ++ +  IF      D V+   ++  FAQNG  EEA
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEA 534

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G++     +S+VL       ++  GK+IH ++IK    ++ F  + LI+M
Sbjct: 535 LNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDM 594

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG+LE + +VF  M  +N VSWNS+IA++  +G   +++ L   M+ EG +   VTF
Sbjct: 595 YGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTF 654

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L+L+ AC+H G V +G+   + MTE ++I+PR EH+AC+VD+  RAG L +A   I  MP
Sbjct: 655 LALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMP 714

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            KPD  +W ALL AC +H + E+ + A+++LF   P +   Y+LM+NI + +GRW   +K
Sbjct: 715 FKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSK 774

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
             + MK+  V K  G SW+++    H FV  DK HP ++ I+  L  +L  + +EG+
Sbjct: 775 VRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELREEGH 831



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 219/461 (47%), Gaps = 8/461 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT---VSWNTMVSGFLRNGEFDMGFGFFKR 145
           T +   L+  Y+   + R+AV +F  +P       + WN ++ G    G++     F+ +
Sbjct: 75  TALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLK 134

Query: 146 SLELGFYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                   L D  +F  ++ +C       + +++H      G + ++ VG+ALI  Y   
Sbjct: 135 MWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANG 194

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R+VF  M  R+ + W  ++ G V+       ++LF  M      PN  T L+  
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFAT-LACF 253

Query: 265 MACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           ++ S  ++ L  G Q+H +  K  L+S++ + + L+ MY+KC  ++D W++F      D 
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+   ++ G  QNGF ++A+ LF  M K+GI  D   + ++L           GK++H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           I+++    + F+ + L+++Y KC  +  +  V+      + V  ++MI+ +  +G   +A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           ++++  +  +G+ P  V   S+L AC+ +  +  G E L S    +    R    + ++D
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQE-LHSYALKNAYEGRCYVESALMD 492

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G L  +     ++  K D + W +++ + + +G+ E
Sbjct: 493 MYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEPE 532


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/517 (36%), Positives = 306/517 (59%), Gaps = 12/517 (2%)

Query: 142 FFKR---SLEL-------GFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEE 190
           FFKR   +LEL       G Y +D  ++  ++SAC     +  V K+ + ++   G + +
Sbjct: 107 FFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMIN-SGLDPD 165

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             + N ++  + KCG     R++F EM  +N+++W  +I GLV    Y E  +LF+ M  
Sbjct: 166 EYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQ 225

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
              +  S  +++ + A +GL  +  GRQ+H    K  +  D+ +  AL+DMYSKCGS+ED
Sbjct: 226 XFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIED 285

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+   E   V    I+ G+A +G+ EEA+ ++ +M  +G++ID    S ++ +   
Sbjct: 286 AQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICAR 345

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             SL   KQ H+ +++  F  +   N  L+++YSK G +ED+  VF  M  +N +SWN++
Sbjct: 346 LASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNAL 405

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           IA +  HG G +A+E++E M  EG+ P  VTFL++L ACS+ GL ++G E  +SM+  H+
Sbjct: 406 IAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           I PRA HYAC+++++GR GLL EA + I+  P KP V +W ALL AC +H + E+GK+AA
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAA 525

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           EKL+   P+  + Y+++ NIY+ SGR +E A  I+ +K  G+      SWIEI+KQ + F
Sbjct: 526 EKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGF 585

Query: 611 VVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           +  DK H Q+  I+  L EL+  +   GYVP  +F+L
Sbjct: 586 ISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLL 622



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 203/433 (46%), Gaps = 31/433 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L  ++KC  M +A +LFD+MP ++ +SWNT++ G +  G++   F  F    +  F 
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQX-FS 228

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                 F  ++ A     L    + +H      G   +V V  ALI  Y KCGS    + 
Sbjct: 229 DAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQC 288

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  +  + W ++I+G   +   EE L ++ +M    +  ++ T+   +  C+ L +
Sbjct: 289 VFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLAS 348

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L   +Q H  L +     D+   +AL+D+YSK G +EDA  +F+     + +S   ++ G
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFT 390
           +  +G   EA+++F +M+  G+   PN V+  L V    +  GL  +   +   +  D  
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV--PNHVT-FLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELY 447
             P   +   +I +  + G L+++  +      + +V+ W +++ A   H N F+ L  +
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKN-FE-LGKF 523

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
              KL G+ P  ++        ++V L+N           ++  S R E  A V+  + R
Sbjct: 524 AAEKLYGMGPEKLS--------NYVVLLN-----------IYNXSGRLEEAAAVIQTLKR 564

Query: 508 AGL-LIEARSFIE 519
            GL ++ A S+IE
Sbjct: 565 RGLRMLPACSWIE 577


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/517 (36%), Positives = 306/517 (59%), Gaps = 12/517 (2%)

Query: 142 FFKR---SLEL-------GFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEE 190
           FFKR   +LEL       G Y +D  ++  ++SAC     +  V K+ + ++   G + +
Sbjct: 107 FFKRYHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMIN-SGLDPD 165

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             + N ++  + KCG     R++F EM  +N+++W  +I GLV    Y E  +LF+ M  
Sbjct: 166 EYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQ 225

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
              +  S  +++ + A +GL  +  GRQ+H    K  +  D+ +  AL+DMYSKCGS+ED
Sbjct: 226 DFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIED 285

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+   E   V    I+ G+A +G+ EEA+ ++ +M  +G++ID    S ++ +   
Sbjct: 286 AQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICAR 345

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             SL   KQ H+ +++  F  +   N  L+++YSK G +ED+  VF  M  +N +SWN++
Sbjct: 346 LASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNAL 405

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           IA +  HG G +A+E++E M  EG+ P  VTFL++L ACS+ GL ++G E  +SM+  H+
Sbjct: 406 IAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHK 465

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           I PRA HYAC+++++GR GLL EA + I+  P KP V +W ALL AC +H + E+GK+AA
Sbjct: 466 IKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAA 525

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           EKL+   P+  + Y+++ NIY+ SGR +E A  I+ +K  G+      SWIEI+KQ + F
Sbjct: 526 EKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGF 585

Query: 611 VVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           +  DK H Q+  I+  L EL+  +   GYVP  +F+L
Sbjct: 586 ISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLL 622



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 198/431 (45%), Gaps = 40/431 (9%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L  ++KC  M +A +LFD+MP ++ +SWNT++ G +  G++   F  F    +  F 
Sbjct: 170 NRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQ-DFS 228

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                 F  ++ A     L    + +H      G   +V V  ALI  Y KCGS    + 
Sbjct: 229 DAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQC 288

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  +  + W ++I+G   +   EE L ++ +M    +  ++ T+   +  C+ L +
Sbjct: 289 VFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLAS 348

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L   +Q H  L +     D+   +AL+D+YSK G +EDA  +F+     + +S   ++ G
Sbjct: 349 LEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAG 408

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  +G   EA+++F +M+  G+   PN V+  L V    +  GL                
Sbjct: 409 YGNHGRGVEAVEMFERMLHEGMV--PNHVT-FLAVLSACSYSGLS--------------- 450

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                       +  ++ +S+    ++ PR ++ +  MI    R G   +A  L ++   
Sbjct: 451 -----------DRGWEIFESMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIKDAPF 498

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISP-RAEHYACVVDMVGRAGL 510
              +PT   + +LL AC     V+K  E  K   E ++ + P +  +Y  ++++  R+G 
Sbjct: 499 ---KPTVNMWAALLTACR----VHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGR 551

Query: 511 LIEARSFIERM 521
           L EA + I+ +
Sbjct: 552 LEEAAAVIQTL 562


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 209/597 (35%), Positives = 324/597 (54%), Gaps = 18/597 (3%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           +V D Y+ +S +LS  +       G  +HA  ++          Y       + N L+  
Sbjct: 245 VVPDGYI-LSTVLSACSILPFLEGGKQIHAHILR----------YGHEKDASLMNVLIDS 293

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y+KC ++R A KLFD MP ++ +SW T++SG+ +N         F    + G  + D  +
Sbjct: 294 YVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGL-KPDMFA 352

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
            + IL++C           +H          +  V N+LI  Y KC   +  RKVF    
Sbjct: 353 CSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFA 412

Query: 219 VRNVITWTAVISGL----VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +V+ + A+I G      Q +L++  L +F  M   LI P+ LT++S + A + L +L 
Sbjct: 413 ADDVVLFNAMIEGYSRLGTQWELHD-ALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             +QIHG+++K  L  D+   SAL+ +YS C  ++D+  +F+  +  D V    +  G+ 
Sbjct: 472 LSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYV 531

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q    EEA+ LF+++  +    D      ++   G   SL LG++ H  ++K     NP+
Sbjct: 532 QQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPY 591

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + N L++MY+KCG  ED+ K F   A R+ V WNS+I+++A HG G KAL++ E+M  EG
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEG 651

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           +EP  +TF+ +L ACSH GLV  G++  + M     I P  EHY C+V ++GRAG L EA
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNEA 710

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           R  IE+MP KP  +VW++LL  C+  G+ E+ +YAAE   L+ P     + L++NIY+  
Sbjct: 711 RELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASK 770

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           G W +  K  +RMK  GV KE G SWIEI K+VH F+  DK H +A+ I+ VL +LL
Sbjct: 771 GMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLL 827



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 206/386 (53%), Gaps = 7/386 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKR 145
           T + N L++ Y +   M  A K+F+ MP R+ V+W+TMVS    +G ++     F  F R
Sbjct: 79  TYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWR 138

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           + +    +   +SF    S  D S   +V ++   LV    ++ +V VG  LI  Y K G
Sbjct: 139 TRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVK-SRFDRDVYVGTLLIDFYLKEG 197

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           +    R VF  +  ++ +TWT +ISG V+       L+LF ++  G + P+     + + 
Sbjct: 198 NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLS 257

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           ACS L  L  G+QIH  + +   + D  + + L+D Y KCG V  A ++F+     + +S
Sbjct: 258 ACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIIS 317

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T +L G+ QN   +EAM+LF  M K G++ D    S++L       +L  G Q+H+  I
Sbjct: 318 WTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTI 377

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK--- 442
           K++  ++ +V N LI+MY+KC  L ++ KVF   A  + V +N+MI  ++R G  ++   
Sbjct: 378 KANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHD 437

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHA 468
           AL ++ +M+   + P+ +TF+SLL A
Sbjct: 438 ALNIFHDMRFRLIRPSLLTFVSLLRA 463



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 189/385 (49%), Gaps = 26/385 (6%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           L   ++H  + + G E +  + N L+  Y + G     RKVF +M  RN++TW+ ++S  
Sbjct: 61  LYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSAC 120

Query: 233 VQNQLYEEGLKLFVKMHLGLIN-PNSLTYLSSVMACSGLQALCEGR----QIHGILWKLA 287
             +  YEE L +F+       N PN     S + ACSGL     GR    Q+   L K  
Sbjct: 121 NHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDG--SGRWMVFQLQSFLVKSR 178

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
              D+ + + L+D Y K G+++ A  +F+   E   V+ T ++ G  + G    ++QLF 
Sbjct: 179 FDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFY 238

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           ++++  +  D  ++S VL    +   L  GKQIH+ I++     +  + N LI+ Y KCG
Sbjct: 239 QLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCG 298

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            +  + K+F  M  +N +SW ++++ + ++    +A+EL+  M   G++P      S+L 
Sbjct: 299 RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILT 358

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYAC--VVDMVGRAGLLIEARSFIERM 521
           +C+ +  +  G       T+VH  + +A    + Y    ++DM  +   L EAR   + +
Sbjct: 359 SCASLHALEFG-------TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFD-I 410

Query: 522 PVKPDVLVWQALLGACSIHGDSEMG 546
               DV+++ A+     I G S +G
Sbjct: 411 FAADDVVLFNAM-----IEGYSRLG 430



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 10/218 (4%)

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           + +L +  +D  L     +H  II S    + +++N L+N+YS+ G +  + KVF +M  
Sbjct: 48  ARLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPE 107

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           RN V+W++M++A   HG   ++L ++ +  +     P +    S + ACS +    + M 
Sbjct: 108 RNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMV 167

Query: 481 F-LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           F L+S     R          ++D   + G +  AR   + +P K  V  W  ++  C  
Sbjct: 168 FQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTV-TWTTMISGCVK 226

Query: 540 HGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
            G S    Y + +LF    +    P  YIL   + +CS
Sbjct: 227 MGRS----YVSLQLFYQLMEGNVVPDGYILSTVLSACS 260



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 18/118 (15%)

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           L H   H  ++  G+E    ++ +            ++++  RAG ++ AR   E+MP +
Sbjct: 61  LYHNVVHGQIIVSGLELDTYLSNI------------LMNLYSRAGGMVYARKVFEKMPER 108

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC-----SGRW 577
            +++ W  ++ AC+ HG  E         +  + +SP  YIL + I +C     SGRW
Sbjct: 109 -NLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRW 165


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 319/548 (58%), Gaps = 10/548 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC ++R+A ++FD MP R+TVSWN +++G+  +G+       F      G  
Sbjct: 132 SALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLA 191

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+A+F  +L+A +     L+ + +H  +   G    +TV NA IT+Y +CGS    R+
Sbjct: 192 P-DEATFASLLTAVEGPSCFLMHQ-LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRR 249

Query: 213 VF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGL 270
           +F G   +R++I+W A++     N + +E +K FV+M     ++P+  ++ S + +CS  
Sbjct: 250 IFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEH 309

Query: 271 -QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDGVSM 326
                +GR IHG++ K AL+    + +AL+ MY++      +EDA++ F      D VS 
Sbjct: 310 GHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSW 369

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L G++Q+G   +A++ F  M    +  D    SA L        L LGKQIH L+I 
Sbjct: 370 NSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIH 429

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F SN FV++ LI MYSK G ++D+ K F      +SV WN+MI  +A+HG       L
Sbjct: 430 SGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDIL 489

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           + EM L+   P D +TF+ L+ +CSH GLV++G E L +M   + +  R EHYAC VD+ 
Sbjct: 490 FNEM-LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLY 548

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A+  I+ MP +PD +VW  LLGAC IHG+ E+    A  LF+A+P   + Y+
Sbjct: 549 GRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYV 608

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++++YS  G W +RA   + MK+ G+ K  G SWIE++ +VHSF  +DK HP+ D I+ 
Sbjct: 609 LLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYE 668

Query: 626 VLAELLRL 633
           +L  LL++
Sbjct: 669 MLRVLLQV 676



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 228/471 (48%), Gaps = 24/471 (5%)

Query: 88  ATVIWNSLLSFYLKC--DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           A   WN LL+ Y +   D +  A ++FD++P RD VSWN +++    +G     +   + 
Sbjct: 24  APTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRA 83

Query: 146 SLELGFYQLDQASFTIILSACDRS----ELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
               G      AS T  L +  RS        +   +  L    G    V   +AL+  Y
Sbjct: 84  MHAQGL-----ASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVY 138

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCG     R+VF  M  RN ++W A+I+G  ++      L+LF++M    + P+  T+ 
Sbjct: 139 AKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFA 198

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + A  G        Q+HG + K      L + +A +  YS+CGS++D+ +IF+   ++
Sbjct: 199 SLLTAVEGPSCFLM-HQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 322 -DGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGV---FGVDTSLGL 376
            D +S   +L  +  NG ++EAM+ FV+M++ +G+  D    ++++      G D     
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDH--Q 315

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAA 433
           G+ IH L+IKS       V N LI MY++  +   +ED+ K F+ +  +++VSWNSM+  
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +++HG    AL+ +  M  E V   +  F + L + S + ++  G + +  +      + 
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFAS 434

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                + ++ M  ++G++ +AR   E    K   + W A++   + HG +E
Sbjct: 435 NDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAE 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 24/289 (8%)

Query: 298 LMDMYSKCG--SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           L+  YS+     +  A ++F+     D VS   +L   A +G   EA +L   M   G+ 
Sbjct: 31  LLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLA 90

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            +   + + L    V     +G Q+ SL +KS   +N F  + L+++Y+KCG + D+ +V
Sbjct: 91  SNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQV 150

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  RN+VSWN++IA +   G+   ALEL+ EM+ EG+ P + TF SLL A      V
Sbjct: 151 FDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTA------V 204

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMV---------GRAGLLIEARSFIERMPVKPD 526
                FL     +H++  +   Y   + +           + G L ++R   + +    D
Sbjct: 205 EGPSCFL-----MHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 527 VLVWQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           ++ W A+LGA + +G D E  K+   ++       P  Y   + I SCS
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFV-RMMQESGVHPDMYSFTSIISSCS 307



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 38/276 (13%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA-----TVIWNSLLSFYLK 101
           I  L+  SA EG   +  +L A + +  E    ++ Y   N+     TV WNS+L+ Y +
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
                +A+K F             M S  +R  E+       + S EL   QL       
Sbjct: 379 HGLSADALKFF-----------RCMCSENVRTDEYAFS-AALRSSSELAVLQL------- 419

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
                         K IH LV   G+     V ++LI  Y K G     RK F E    +
Sbjct: 420 -------------GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSS 466

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            + W A+I G  Q+   E    LF +M       + +T++  + +CS    + EG +I  
Sbjct: 467 SVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILN 526

Query: 282 IL-WKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            +  K  +   +   +  +D+Y + G ++ A ++ +
Sbjct: 527 TMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLID 562


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 319/548 (58%), Gaps = 10/548 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC ++R+A ++FD MP R+TVSWN +++G+  +G+       F      G  
Sbjct: 132 SALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLA 191

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+A+F  +L+A +     L+ + +H  +   G    +TV NA IT+Y +CGS    R+
Sbjct: 192 P-DEATFASLLTAVEGPSCFLMHQ-LHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRR 249

Query: 213 VF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGL 270
           +F G   +R++I+W A++     N + +E +K FV+M     ++P+  ++ S + +CS  
Sbjct: 250 IFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEH 309

Query: 271 -QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDGVSM 326
                +GR IHG++ K AL+    + +AL+ MY++      +EDA++ F      D VS 
Sbjct: 310 GHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSW 369

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L G++Q+G   +A++ F  M    +  D    SA L        L LGKQIH L+I 
Sbjct: 370 NSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIH 429

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F SN FV++ LI MYSK G ++D+ K F      +SV WN+MI  +A+HG       L
Sbjct: 430 SGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDIL 489

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           + EM L+   P D +TF+ L+ +CSH GLV++G E L +M   + +  R EHYAC VD+ 
Sbjct: 490 FNEM-LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLY 548

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A+  I+ MP +PD +VW  LLGAC IHG+ E+    A  LF+A+P   + Y+
Sbjct: 549 GRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYV 608

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++++YS  G W +RA   + MK+ G+ K  G SWIE++ +VHSF  +DK HP+ D I+ 
Sbjct: 609 LLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYE 668

Query: 626 VLAELLRL 633
           +L  LL++
Sbjct: 669 MLRVLLQV 676



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/471 (27%), Positives = 229/471 (48%), Gaps = 24/471 (5%)

Query: 88  ATVIWNSLLSFYLKC--DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           AT  WN LL+ Y +   D +  A ++FD++P RD VSWN +++    +G     +   + 
Sbjct: 24  ATTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRA 83

Query: 146 SLELGFYQLDQASFTIILSACDRS----ELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
               G      AS T  L +  RS        +   +  L    G    V   +AL+  Y
Sbjct: 84  MHAQGL-----ASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVY 138

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCG     R+VF  M  RN ++W A+I+G  ++      L+LF++M    + P+  T+ 
Sbjct: 139 AKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFA 198

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + A  G        Q+HG + K      L + +A +  YS+CGS++D+ +IF+   ++
Sbjct: 199 SLLTAVEGPSCFLM-HQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 322 -DGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGV---FGVDTSLGL 376
            D +S   +L  +  NG ++EAM+ FV+M++ +G+  D    ++++      G D     
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDH--Q 315

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAA 433
           G+ IH L+IKS       V N LI MY++  +   +ED+ K F+ +  +++VSWNSM+  
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +++HG    AL+ +  M  E V   +  F + L + S + ++  G + +  +      + 
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFAS 434

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                + ++ M  ++G++ +AR   E    K   + W A++   + HG +E
Sbjct: 435 NDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAE 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 24/289 (8%)

Query: 298 LMDMYSKCG--SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           L+  YS+     +  A ++F+     D VS   +L   A +G   EA +L   M   G+ 
Sbjct: 31  LLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQGLA 90

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            +   + + L    V     +G Q+ SL +KS   +N F  + L+++Y+KCG + D+ +V
Sbjct: 91  SNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQV 150

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  RN+VSWN++IA +   G+   ALEL+ EM+ EG+ P + TF SLL A      V
Sbjct: 151 FDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTA------V 204

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMV---------GRAGLLIEARSFIERMPVKPD 526
                FL     +H++  +   Y   + +           + G L ++R   + +    D
Sbjct: 205 EGPSCFL-----MHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 527 VLVWQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           ++ W A+LGA + +G D E  K+   ++       P  Y   + I SCS
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFV-RMMQESGVHPDMYSFTSIISSCS 307


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 317/560 (56%), Gaps = 2/560 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ NSLL  Y K   +  A  LF  M  +D V++N +++G+ + G        F +  +L
Sbjct: 175 MVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDL 234

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF +  + +F  +L+A  + +     + +H  V  C +   V V NAL+  Y K      
Sbjct: 235 GF-RPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVE 293

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RK+F EM   + I++  +I+    N   EE L+LF ++     +     + + +   + 
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN 353

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  GRQIH         S++ + ++L+DMY+KC    +A +IF        V  T +
Sbjct: 354 SLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTAL 413

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ Q G  E+ ++LFV+M +A I  D    +++L       SL LGKQ+HS II+S  
Sbjct: 414 ISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGC 473

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN F  + L++MY+KCG +++++++F  M  RNSVSWN++I+A+A++G+G  AL  +E+
Sbjct: 474 LSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQ 533

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G++P  V+FLS+L ACSH GLV +G+++  SMT+V+++ PR EHYA +VDM+ R+G
Sbjct: 534 MIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSG 593

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMA 568
              EA   + RMP +PD ++W ++L +C IH + E+   AA++LF +      APY+ M+
Sbjct: 594 RFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G W    K  K ++E G+ K    SW+EI+++ H F  +D  HPQ   I   L 
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLD 713

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL + M ++GY P+    LH
Sbjct: 714 ELEKQMEEQGYKPDSTCALH 733



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 233/479 (48%), Gaps = 6/479 (1%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +P+  VI  N+++  YLK   +  A  LFD M  R  V+W  ++ G+ ++  F   F  F
Sbjct: 68  MPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLF 127

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
                 G    D  +   +LS     E       +H  V   GY+  + V N+L+ SY K
Sbjct: 128 ADMCRHGMVP-DHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCK 186

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
             S      +F  M  ++ +T+ A+++G  +     + + LF KM      P+  T+ + 
Sbjct: 187 TRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAV 246

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + A   +  +  G+Q+H  + K     ++ + +AL+D YSK   + +A ++F    E+DG
Sbjct: 247 LTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDG 306

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +S  V++   A NG  EE+++LF ++     +      + +L +     +L +G+QIHS 
Sbjct: 307 ISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQ 366

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I +D  S   V N L++MY+KC    ++ ++F+ +A ++SV W ++I+ + + G     
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L+L+ EM    +     T+ S+L AC+++  +  G +    +     +S      A +VD
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSA-LVD 485

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDS 560
           M  + G + EA    + MPV+  V  W AL+ A + +GD      + E++  +  QP+S
Sbjct: 486 MYAKCGSIKEALQMFQEMPVRNSV-SWNALISAYAQNGDGGHALRSFEQMIHSGLQPNS 543



 Score = 38.9 bits (89), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           + + + +IK+ F  N    N  +  + + GDL  + K+F  M  +N +S N+MI  + + 
Sbjct: 27  QHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKS 86

Query: 438 GNGFKALELYEEM 450
           GN   A  L++ M
Sbjct: 87  GNLSTARSLFDSM 99


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/605 (33%), Positives = 326/605 (53%), Gaps = 47/605 (7%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y +C  + +A K+FD+M + D VSWN+++  + + G+  +    F R     
Sbjct: 164 VGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF 223

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   +L  C       + K +HC        + + VGN L+  Y KCG     
Sbjct: 224 GCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEA 283

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--------------------- 249
             VF  M V++V++W A+++G  Q   +E+ ++LF KM                      
Sbjct: 284 NTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQR 343

Query: 250 ------LGL--------INPNSLTYLSSVMACSGLQALCEGRQIH--GILWKLALQS--- 290
                 LG+        I PN +T +S +  C+ + AL  G++IH   I + + L+    
Sbjct: 344 GLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGH 403

Query: 291 --DLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +  + + L+DMY+KC  V+ A  +F+    +E D V+ TV++ G++Q+G   +A++L 
Sbjct: 404 GDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELL 463

Query: 347 VKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINMY 403
            +M +   +  PN   +S  L       +L +GKQIH+  +++   + P FV+N LI+MY
Sbjct: 464 SEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMY 523

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KCG + D+  VF  M  +N V+W S++  +  HG G +AL +++EM+  G +   VT L
Sbjct: 524 AKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L+ACSH G++++GME+   M  V  +SP  EHYAC+VD++GRAG L  A   IE MP+
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM 643

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +P  +VW A L  C IHG  E+G+YAAEK+     +    Y L++N+Y+ +GRWK+  + 
Sbjct: 644 EPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRI 703

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
              M+  GV K  G SW+E  K   +F V DK HP A  I+ VL + ++ + D GYVP  
Sbjct: 704 RSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPET 763

Query: 644 RFILH 648
            F LH
Sbjct: 764 GFALH 768



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 231/507 (45%), Gaps = 67/507 (13%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDT--VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           L+S Y+    + +AV L    P  D     WN+++  +  NG  +     F     L  +
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLS-W 123

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  +F  +  AC         +  H L  + G+   V VGNAL+  Y +C S S  RK
Sbjct: 124 TPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARK 183

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSGL 270
           VF EM V +V++W ++I    +    +  L++F +M    G   P+++T ++ +  C+ L
Sbjct: 184 VFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFG-CRPDNITLVNVLPPCASL 242

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                G+Q+H       +  ++ + + L+DMY+KCG +++A  +F      D VS   ++
Sbjct: 243 GTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMV 302

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEID--------------------------------- 357
            G++Q G  E+A++LF KM +  I++D                                 
Sbjct: 303 AGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIK 362

Query: 358 PNMVSAVLGVFGVDT--SLGLGKQIHSLIIKS--DFTSNP-----FVNNGLINMYSKCGD 408
           PN V+ +  + G  +  +L  GK+IH   IK   D   N       V N LI+MY+KC  
Sbjct: 363 PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKK 422

Query: 409 LEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--PTDVTFLS 464
           ++ +  +F  ++P  R+ V+W  MI  +++HG+  KALEL  EM  E  +  P   T   
Sbjct: 423 VDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISC 482

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSF 517
            L AC+ +  +  G        ++H  + R +  A       C++DM  + G + +AR  
Sbjct: 483 ALVACASLAALRIG-------KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
            + M  K +V  W +L+    +HG  E
Sbjct: 536 FDNMMAKNEV-TWTSLMTGYGMHGYGE 561



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 199/435 (45%), Gaps = 68/435 (15%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR----DTVSWNTMVSGFLR 132
           F N +V +V    V WN++++ Y +  +  +AV+LF+ M       D V+W+  +SG+ +
Sbjct: 287 FSNMSVKDV----VSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQ 342

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL-------VYLC 185
            G      G  ++ L  G  + ++ +   +LS C      +  K IHC        +   
Sbjct: 343 RGLGYEALGVCRQMLSSGI-KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLK 243
           G+ +E  V N LI  Y KC    + R +F  +  + R+V+TWT +I G  Q+    + L+
Sbjct: 402 GHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALE 461

Query: 244 LFVKM--HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESAL 298
           L  +M        PN+ T   +++AC+ L AL  G+QIH   + L  Q +   L + + L
Sbjct: 462 LLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA--YALRNQQNAVPLFVSNCL 519

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KCGS+ DA  +F+     + V+ T ++ G+  +G+ EEA+ +F +M + G ++D 
Sbjct: 520 IDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD- 578

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
                     GV   + L    HS                        G ++  ++ F+R
Sbjct: 579 ----------GVTLLVVLYACSHS------------------------GMIDQGMEYFNR 604

Query: 419 MAPRNSVS-----WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           M     VS     +  ++    R G    AL L EEM +   EP  V +++ L  C   G
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPM---EPPPVVWVAFLSCCRIHG 661

Query: 474 LVNKGMEFLKSMTEV 488
            V  G    + +TE+
Sbjct: 662 KVELGEYAAEKITEL 676



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 21/234 (8%)

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  +  NG   + + LF  M       D      V    G  +S+  G+  H+L + + 
Sbjct: 98  LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F SN FV N L+ MYS+C  L D+ KVF  M+  + VSWNS+I ++A+ G    ALE++ 
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217

Query: 449 EMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CV 501
            M  E G  P ++T +++L  C+ +G  + G        ++H  +  +E         C+
Sbjct: 218 RMTNEFGCRPDNITLVNVLPPCASLGTHSLG-------KQLHCFAVTSEMIQNMFVGNCL 270

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLF 554
           VDM  + G++ EA +    M VK DV+ W A++      G S++G++  A +LF
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVK-DVVSWNAMVA-----GYSQIGRFEDAVRLF 318


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/581 (35%), Positives = 332/581 (57%), Gaps = 16/581 (2%)

Query: 22  SPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQN 81
           SP  + +I + T   S   L N   +++++S  AK G FHLG   H++ +K        N
Sbjct: 50  SPVDSDLIAEFTRHGS---LSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFI---SN 103

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           VY       I ++++  Y KC ++ +A  LFD MP R  V+WN+++ G+L      +   
Sbjct: 104 VY-------ICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIE 156

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F + L+     +   S +  L+ C + E   V   +H L+   G    V VG +L+  Y
Sbjct: 157 LFIKMLKAAI-NVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMY 215

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCG     R VF  M  RNVITWT++++G  Q +  +E + L  +M L  + PN +TY 
Sbjct: 216 SKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYN 275

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEE 320
           S + + SG   L    Q+H  + +L L+S++ I + L+ +YSKC S +ED  ++      
Sbjct: 276 SLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMT 335

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D ++   ++ G+++ G  EEA++ F +M +AGI+ID   +++V+G  G  + L  GK +
Sbjct: 336 CDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAM 395

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+LI ++ + S+  V NGL++MY++CG + DS +VF  M   + +SWN+++ AFA HG G
Sbjct: 396 HALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYG 455

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYA 499
            +A+EL+E+M+   ++P   TFL++L ACSHVG V+KG+E+  +M     + P + EHYA
Sbjct: 456 REAVELFEQMRKTEIKPNSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEHYA 515

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +VD  GRAG L EA +FI  MP+ P   V++ALL A  +HG+ E+   +A+KL    P+
Sbjct: 516 SLVDTFGRAGYLNEAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPN 575

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            PA Y+L++++ +  G W + A   K M + G+ K+ G SW
Sbjct: 576 DPATYVLLSSVLTVDGNWDDAADLRKLMCDRGLRKKPGYSW 616



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 14/206 (6%)

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN        L  +  + G   +P  ++ ++       S  LG Q HS I+K  F SN +
Sbjct: 46  QNTSSPVDSDLIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVY 105

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + + +++MY+KCG++  +  +F +M  R  V+WNS+I  +        A+EL+ +M    
Sbjct: 106 ICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAA 165

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACV-----VDMVGRA 508
           +  +  +  S L  CS        +E  +  T+VH  I      Y  V     VDM  + 
Sbjct: 166 INVSAFSVSSCLAGCSQ-------LEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKC 218

Query: 509 GLLIEARSFIERMPVKPDVLVWQALL 534
           G + ++R   + M V  +V+ W +++
Sbjct: 219 GDVDDSRLVFDHM-VNRNVITWTSMV 243


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 319/561 (56%), Gaps = 4/561 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           NA V  NSL++ Y KC ++ +A  LFD++  RD VSWN+M+SG   NG    G  FF + 
Sbjct: 193 NAVV--NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQM 250

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           L LG   +D A+   +L AC       + + +H      G+   V   N L+  Y KCG+
Sbjct: 251 LNLGV-DVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGN 309

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            +   +VF +M    +++WT++I+  V+  L+ E + LF +M    + P+     S V A
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHA 369

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+   +L +GR++H  + K  + S+L + +ALM+MY+KCGS+E+A  IF      + VS 
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSW 429

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G++QN    EA+QLF+ M K     D  M   +    G+  +L  G++IH  I++
Sbjct: 430 NTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGL-AALEKGREIHGHILR 488

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             + S+  V   L++MY KCG L  + ++F  +  ++ + W  MIA +  HG G +A+  
Sbjct: 489 KGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAIST 548

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E+M++ G+EP + +F S+L+AC+H GL+ +G +   SM     I P+ EHYAC+VD++ 
Sbjct: 549 FEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLI 608

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+G L  A  FIE MP+KPD  +W ALL  C IH D E+ +  AE +F  +P++   Y+L
Sbjct: 609 RSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVL 668

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +AN+Y+ + +W+E  K  +R+ + G+  + G SWIE++ + + F   D  HPQA  I  +
Sbjct: 669 LANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSL 728

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           L +L   M   GY    ++ L
Sbjct: 729 LRKLTMKMNRGGYSNKIKYAL 749



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/503 (30%), Positives = 265/503 (52%), Gaps = 11/503 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   L+  Y+ C  +    ++FD +       WN ++S + + G +    G F++  EL
Sbjct: 93  VLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQEL 152

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  +FT +L     S      K +H  V   G+     V N+LI +YFKCG   S
Sbjct: 153 GI-RGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVES 211

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
            R +F E+  R+V++W ++ISG   N     GL+ F++M +LG ++ +S T ++ ++AC+
Sbjct: 212 ARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLG-VDVDSATLVNVLVACA 270

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +  L  GR +H    K      +   + L+DMYSKCG++  A ++F    E   VS T 
Sbjct: 271 NVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTS 330

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+    + G   EA+ LF +M   G+  D   V++V+       SL  G+++H+ I K++
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNN 390

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN  V+N L+NMY+KCG +E++  +FS++  +N VSWN+MI  ++++    +AL+L+ 
Sbjct: 391 MGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFL 450

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGR 507
           +M+ + ++P DVT   +L AC+ +  + KG E    +      S    H AC +VDM  +
Sbjct: 451 DMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL--HVACALVDMYVK 507

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            GLL+ A+   + +P K D+++W  ++    +HG  +      EK+ +A  + P      
Sbjct: 508 CGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIE-PEESSFT 565

Query: 568 ANIYSC--SGRWKERAKAIKRMK 588
           + +Y+C  SG  KE  K    MK
Sbjct: 566 SILYACTHSGLLKEGWKLFDSMK 588



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 204/419 (48%), Gaps = 5/419 (1%)

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           TV  N  +  F   G+         RS      +L+  ++  +L  C   +     K +H
Sbjct: 24  TVDKNAKICKFCEMGDLRNAMKLLSRSQR---SELELNTYCSVLQLCAELKSLEDGKRVH 80

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            ++   G   +  +G  L+  Y  CG    GR++F  +    +  W  ++S   +   Y 
Sbjct: 81  SIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYR 140

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E + LF KM    I  +S T+   +   +    + E +++HG + KL   S   + ++L+
Sbjct: 141 ESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLI 200

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
             Y KCG VE A  +F+   + D VS   ++ G   NGF    ++ F++M+  G+++D  
Sbjct: 201 AAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSA 260

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +  VL       +L LG+ +H+  +K+ F+     NN L++MYSKCG+L  + +VF +M
Sbjct: 261 TLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKM 320

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
                VSW S+IAA  R G  ++A+ L++EM+ +G+ P      S++HAC+    ++KG 
Sbjct: 321 GETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGR 380

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           E    + + +  S      A +++M  + G + EA     ++PVK +++ W  ++G  S
Sbjct: 381 EVHNHIKKNNMGSNLPVSNA-LMNMYAKCGSMEEANLIFSQLPVK-NIVSWNTMIGGYS 437



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 118/244 (48%), Gaps = 27/244 (11%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           N+P    + N+L++ Y KC  M  A  +F  +P+++ VSWNTM+ G+ +N   +     F
Sbjct: 394 NLP----VSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF 449

Query: 144 ---KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
              ++ L     + D  +   +L AC         + IH  +   GY  ++ V  AL+  
Sbjct: 450 LDMQKQL-----KPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDM 504

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCG     +++F  +  +++I WT +I+G   +   +E +  F KM +  I P   ++
Sbjct: 505 YVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSF 564

Query: 261 LSSVMACSGLQALCEGRQIHGILWKL--ALQSDLCIE------SALMDMYSKCGSVEDAW 312
            S + AC+    L EG       WKL  +++S+  IE      + ++D+  + G++  A+
Sbjct: 565 TSILYACTHSGLLKEG-------WKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAY 617

Query: 313 QIFE 316
           +  E
Sbjct: 618 KFIE 621


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/590 (33%), Positives = 328/590 (55%), Gaps = 41/590 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ +++L+ Y +   +  A+  F+ MP R+  SW TM++ F + G  D     ++R  E 
Sbjct: 397 VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                  A+ T +++A   +++  + K    L++       V   NA+I  Y + G    
Sbjct: 457 TV-----ATKTAMMTA--YAQVGRIQKAR--LIFDEILNPNVVAWNAIIAGYTQNGMLKE 507

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + +F +M V+N  +W A+I+G VQN+   E L+L +++H     P+  ++ S++ AC+ 
Sbjct: 508 AKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACAN 567

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED--------------AWQ-- 313
           +  +  GR IH +  K   Q +  + + L+ MY+KCG+VED              +W   
Sbjct: 568 IGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 314 ---------------IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
                          +FE   + D VS T I+  + Q G  E A+ LF+ M+  GI+ + 
Sbjct: 628 ISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQ 687

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             V+++L   G   ++ LG+Q H+LI K  F +  FV N LI MY KCG  ED   VF  
Sbjct: 688 LTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEE 746

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M   + ++WN+++   A++G G +A++++E+M++EG+ P  ++FL +L ACSH GLV++G
Sbjct: 747 MPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEG 806

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
                SMT+ + I P   HY C+VD++GRAG L EA + IE MPVKPD ++W+ALLGAC 
Sbjct: 807 WAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACR 866

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           IH + E+G+  AE+LF       A Y+L++N+++  G W + A+  K MK+ G+ KE GI
Sbjct: 867 IHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGI 926

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SWI+++ ++H FV  D+ H Q + I+  L E        GY+P+  F+LH
Sbjct: 927 SWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLH 976



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 220/503 (43%), Gaps = 86/503 (17%)

Query: 74  FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           F+ F  +N+         W  LL+ Y K  ++  A ++F+ M  R+ VSWN M+SG+++N
Sbjct: 225 FDAFVGKNIRT-------WTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQN 277

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G+       F           D+                               E+ V  
Sbjct: 278 GDLKNARKLF-----------DEMP-----------------------------EKNVAS 297

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
            N+++T Y  C   S  R++F +M  RN ++W  +ISG V    Y E   +FVKM   + 
Sbjct: 298 WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA 357

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+   ++  + A +GL  L     +  I  K   + D+ + SA+++ Y++ GS++ A  
Sbjct: 358 RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
            FE   E +  S T ++  FAQ G  ++A+QL+ ++ +  +     M++A   V  +   
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRI--- 474

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
                Q   LI       N    N +I  Y++ G L+++  +F +M  +NS SW +MIA 
Sbjct: 475 -----QKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--------------- 478
           F ++    +ALEL  E+   G  P+D +F S L AC+++G V  G               
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 479 ---MEFLKSM----------TEVHRISPRAE--HYACVVDMVGRAGLLIEARSFIERMPV 523
              M  L SM          + V R     +   +  ++  +    +L +AR   E+MP 
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP- 648

Query: 524 KPDVLVWQALLGACSIHGDSEMG 546
           K DV+ W A++ A    G  E+ 
Sbjct: 649 KRDVVSWTAIISAYVQAGHGEVA 671



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 3/229 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WNSL+S   +   + +A  +F+ MP RD VSW  ++S +++ G  ++    F   L 
Sbjct: 621 TVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLA 680

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G  + +Q + T +LSAC       + +  H L++  G++  + VGN+LIT YFKCG   
Sbjct: 681 RGI-KPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YE 738

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            G  VF EM   ++ITW AV+ G  QN L +E +K+F +M +  I P+ +++L  + ACS
Sbjct: 739 DGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS 798

Query: 269 GLQALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
               + EG    + +  K  +   +   + ++D+  + G + +A  + E
Sbjct: 799 HAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIE 847



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 162/370 (43%), Gaps = 43/370 (11%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N  I    + G     R+VF EM  R+V++W ++I+G  QN   +E   LF       + 
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD----AFVG 230

Query: 255 PNSLTYLSSVMACSGLQALCEGRQI-------HGILWKLAL-----QSDLCIESALMDM- 301
            N  T+   +   +    + E R++       + + W   +       DL     L D  
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 302 --------------YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                         Y  C  + +A ++F+   E + VS  V++ G+       EA  +FV
Sbjct: 291 PEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFV 350

Query: 348 KMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           KM +     D ++   VL  + G+D  L L   +  + IK+ +  +  V + ++N Y++ 
Sbjct: 351 KMCRTVARPDQSIFVVVLSAITGLD-DLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRN 409

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G L+ ++  F  M  RN  SW +MIAAFA+ G    A++LYE +     E T  T  +++
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVP----EQTVATKTAMM 465

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            A + VG + K       +     ++P    +  ++    + G+L EA+   ++MPVK +
Sbjct: 466 TAYAQVGRIQKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-N 519

Query: 527 VLVWQALLGA 536
              W A++  
Sbjct: 520 SASWAAMIAG 529



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 150/334 (44%), Gaps = 28/334 (8%)

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           + G VE+A ++F    + D VS   ++ G++QNG  +EA  LF   V   I       + 
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRT----WTI 238

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           +L  +  +  +   +++   + + +  S     N +I+ Y + GDL+++ K+F  M  +N
Sbjct: 239 LLTGYAKEGRIEEAREVFESMTERNVVS----WNAMISGYVQNGDLKNARKLFDEMPEKN 294

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
             SWNS++  +       +A EL+++M     E   V+++ ++    H+    +  +   
Sbjct: 295 VASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISGYVHISDYWEAWDVFV 350

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGL----LIEA-RSFIERMPVKPDVLVWQALLGACS 538
            M    R   R +    VV +    GL    LI + R    +   + DV+V  A+L A +
Sbjct: 351 KMC---RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYT 407

Query: 539 IHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            +G  ++    A   F   P+ +   +  M   ++  GR  +  +  +R+ E  V  +T 
Sbjct: 408 RNGSLDL----AMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTA 463

Query: 598 I--SWIEIEK-QVHSFVVDDKMHPQADTIHGVLA 628
           +  ++ ++ + Q    + D+ ++P     + ++A
Sbjct: 464 MMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIA 497



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F  N  I    + G +E++ +VF+ M  R+ VSWNSMI  ++++G   +A  L++    +
Sbjct: 172 FQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK 231

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            +     T+  LL   +  G + +  E  +SMTE + +S     +  ++    + G L  
Sbjct: 232 NIR----TWTILLTGYAKEGRIEEAREVFESMTERNVVS-----WNAMISGYVQNGDLKN 282

Query: 514 ARSFIERMPVKPDVLVWQALL-GACSIHGDSEMGKYAAEKLFLAQPD 559
           AR   + MP K +V  W +++ G C  +  SE     A +LF   P+
Sbjct: 283 ARKLFDEMPEK-NVASWNSVVTGYCHCYRMSE-----ARELFDQMPE 323


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 314/556 (56%), Gaps = 28/556 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L+  Y K   + +A+ +F+ +   D VSWN +++G + +   +       ++LEL   
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHE-------QALEL--- 346

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                             L  + + +H  +     E ++ V   L+  Y KC      R 
Sbjct: 347 ------------------LGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 388

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  +  +++I W A+ISG  Q     E L LFV+MH   I  N  T  + + + +GLQ 
Sbjct: 389 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 448

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   RQ+HG+  K    SD+ + ++L+D Y KC  VEDA +IFE     D VS T ++  
Sbjct: 449 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITA 508

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ G  EEA++LF++M    ++ D  + S++L      ++   GKQ+H  I+K  F  +
Sbjct: 509 YAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLD 568

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            F  N L+NMY+KCG ++D+ + FS +  R  VSW++MI   A+HG+G +AL+L+ +M  
Sbjct: 569 IFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLK 628

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV P  +T +S+L AC+H GLV +   + +SM E+    P  EHYAC++D++GRAG + 
Sbjct: 629 EGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKIN 688

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA   + +MP + +  VW ALLGA  IH D E+G+ AAE LF+ +P+    ++L+ANIY+
Sbjct: 689 EAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYA 748

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +G+W+  A+  + M++  V KE G+SWIE++ +V++F+V D+ H ++  I+  L EL  
Sbjct: 749 SAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSD 808

Query: 633 LMIDEGYVPNKRFILH 648
           LM   GYVP     LH
Sbjct: 809 LMDKAGYVPMVEIDLH 824



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 151/565 (26%), Positives = 270/565 (47%), Gaps = 65/565 (11%)

Query: 25  ITKIIQDPTSSTSKLVLD------NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFD 78
           + +  +DP ++    ++D        V  S+LLS          G  +HA   K+     
Sbjct: 31  VPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS----- 85

Query: 79  NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
                 + +   I N L++ Y KC     A KL D+    D VSW+ ++SG+ +NG    
Sbjct: 86  -----GLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGG 140

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
               F     LG  + ++ +F+ +L AC   +   + K +H +V + G+E +V V N L+
Sbjct: 141 ALMAFHEMHLLGV-KCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLV 199

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y KC      +++F E+  RNV++W A+ S  VQ     E + LF +M L  I PN  
Sbjct: 200 VMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEF 259

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           +  S V AC+GL+    G+ IHG L KL    D    +AL+DMY+K G + DA  +FE  
Sbjct: 260 SLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKI 319

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           ++ D VS   ++ G   +   E+A++L  +M                            +
Sbjct: 320 KQPDIVSWNAVIAGCVLHEHHEQALELLGQM---------------------------KR 352

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+HS ++K D  S+ FV+ GL++MYSKC  LED+   F+ +  ++ ++WN++I+ ++++ 
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 412

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              +AL L+ EM  EG+     T  ++L + +       G++ +    +VH +S ++  +
Sbjct: 413 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCRQVHGLSVKSGFH 465

Query: 499 A------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           +       ++D  G+   + +A    E   +  D++ + +++ A + +G  E     A K
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIG-DLVSFTSMITAYAQYGQGE----EALK 520

Query: 553 LFLAQPD---SPAPYILMANIYSCS 574
           LFL   D    P  ++  + + +C+
Sbjct: 521 LFLEMQDMELKPDRFVCSSLLNACA 545



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 12/136 (8%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           D +V  S LL+  A    F  G  LH   +K          Y         NSL++ Y K
Sbjct: 533 DRFV-CSSLLNACANLSAFEQGKQLHVHILK----------YGFVLDIFAGNSLVNMYAK 581

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +A + F ++  R  VSW+ M+ G  ++G        F + L+ G    +  +   
Sbjct: 582 CGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV-SPNHITLVS 640

Query: 162 ILSACDRSELSLVSKM 177
           +L AC+ + L   +K+
Sbjct: 641 VLGACNHAGLVTEAKL 656


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 320/592 (54%), Gaps = 44/592 (7%)

Query: 90  VIWNSLLSFYLK-CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           VI  S+L+ Y +    +  A+K FD M  R+  +W+TM++     G  D     + R   
Sbjct: 259 VIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPV 318

Query: 149 LGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  Q +    L+ C R +E  ++ + I         +  V   NA+IT Y + G  
Sbjct: 319 KSIPS--QTALLTGLARCGRITEARILFEQIP--------DPIVVSWNAMITGYMQNGMV 368

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              +++F  M  RN I+W  +I+G  QN   EE L L   +H   + P+  +  SS +AC
Sbjct: 369 DEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLAC 428

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-------------------- 307
           S + AL  GRQ+H +  K   Q +  + +AL+ MY KC +                    
Sbjct: 429 SHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWN 488

Query: 308 -----------VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
                      +EDA  IF+     D VS T I+  +AQ    +EA++ F  M+    + 
Sbjct: 489 SFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKP 548

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +  +++ +L V G   S  LG+QIH++ IK    S   V N L++MY KCG   DS KVF
Sbjct: 549 NSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVF 607

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  R+  +WN+ I   A+HG G +A+++YE M+  GV P +VTF+ LL+ACSH GLV+
Sbjct: 608 DSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVD 667

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G +F KSM+  + ++P  EHYAC+VD++GR G +  A  FI  MP++PD ++W ALLGA
Sbjct: 668 EGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGA 727

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C IH ++E+G+ AAEKLF  +P +   Y++++NIYS  G W E A+  K MK+ GV KE 
Sbjct: 728 CKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEP 787

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G SW++I  +VHSFV  DK H + + I   L +L  L+   GYVP+  F+LH
Sbjct: 788 GCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVPDTEFVLH 839



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 220/469 (46%), Gaps = 71/469 (15%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           FD  +  NV  AT+    LLS Y +  ++ +A ++FD MP R+TV+WN MVS +++NG+ 
Sbjct: 87  FDAISGGNVRTATI----LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDI 142

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
            M    F                            ++ S+             +VT  N+
Sbjct: 143 TMARRLFD---------------------------AMPSR-------------DVTSWNS 162

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           ++T Y           +F +M  RN++TWT +ISG V+ + + +G  +F  MH    +P+
Sbjct: 163 MVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPD 222

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-AWQIF 315
              + S + A +GLQ L     +  ++ K   +SD+ I ++++++Y++  S  D A + F
Sbjct: 223 QSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFF 282

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E +  + + ++   +  G  + A+ ++ +        DP  V ++     + T L 
Sbjct: 283 DGMVERNEYTWSTMIAALSHGGRIDAAIAVYGR--------DP--VKSIPSQTALLTGLA 332

Query: 376 LGKQIHSLIIKSDFTSNPFVN--NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
              +I    I  +   +P V   N +I  Y + G ++++ ++F RM  RN++SW  MIA 
Sbjct: 333 RCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A++G   +AL+L + +   G+ P+  +  S   ACSH+G +  G        +VH ++ 
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG-------RQVHSLAV 445

Query: 494 RA----EHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +A      Y C  ++ M G+   +   R    RM VK D + W + + A
Sbjct: 446 KAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIAA 493



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 4/244 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WNS ++  ++ + + +A  +FD+M  RD VSW T++S + +    D    FFK  L 
Sbjct: 484 TVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLH 543

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               + +    TI+LS C     + + + IH +    G + E+ V NAL++ YFKCG + 
Sbjct: 544 -EHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD 602

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S  KVF  M  R++ TW   I+G  Q+ L  E +K++  M    + PN +T++  + ACS
Sbjct: 603 S-HKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACS 661

Query: 269 GLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQ-IFEFAEELDGVSM 326
               + EG Q    + +   L   L   + ++D+  + G V+ A + I++   E D V  
Sbjct: 662 HAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIW 721

Query: 327 TVIL 330
           + +L
Sbjct: 722 SALL 725



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS+    G   LG  +H   IK          + + +  ++ N+L+S Y KC    ++ 
Sbjct: 556 LLSVCGGLGSAKLGQQIHTVAIK----------HGMDSELIVANALMSMYFKCG-CADSH 604

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+FD M  RD  +WNT ++G  ++G        ++    +G    ++ +F  +L+AC  +
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLP-NEVTFVGLLNACSHA 663

Query: 170 EL 171
            L
Sbjct: 664 GL 665


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 329/607 (54%), Gaps = 12/607 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V    +LS+ A +    LG  LH   + +   F+            I NSLLS Y KC
Sbjct: 234 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGS----------IKNSLLSMYSKC 283

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +  +A+KLF  M   DTV+WN M+SG++++G  +    FF   +  G    D  +F+ +
Sbjct: 284 GRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP-DAITFSSL 342

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +  + E     + IHC +       ++ + +ALI +YFKC   S  +K+F +    +V
Sbjct: 343 LPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDV 402

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           + +TA+ISG + N L  + L++F  +    I+PN +T +S +    GL AL  GR++HG 
Sbjct: 403 VVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGF 462

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K    +   I  A++DMY+KCG +  A++IF    + D VS   ++   AQ+     A
Sbjct: 463 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAA 522

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + +F +M  +GI  D   +SA L       S   GK IH  +IK     + +  + LI+M
Sbjct: 523 IDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDM 582

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVT 461
           Y+KCG+L+ ++ VF  M  +N VSWNS+IAA+  HG    +L L+ EM +  G  P  +T
Sbjct: 583 YAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQIT 642

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL ++  C HVG V++G+ F +SMT+ + I P+ EHYACVVD+ GRAG L EA   ++ M
Sbjct: 643 FLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSM 702

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  PD  VW  LLGA  +H + E+ K A+ +L    P +   Y+L++N ++ +G W+   
Sbjct: 703 PFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVT 762

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K    MKE  V K  G SWIEI K  H FV  D  HP++  I+ +L  LL  +  EGY+P
Sbjct: 763 KVRSLMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIYSLLNSLLEELRLEGYIP 822

Query: 642 NKRFILH 648
                LH
Sbjct: 823 QPYLPLH 829



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 243/458 (53%), Gaps = 17/458 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  YL+  ++  A KLFD +  +D V WN M++G+ + G  D     F       
Sbjct: 171 VASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFS------ 224

Query: 151 FYQLDQAS-----FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
             ++DQ S     F  +LS C    L  +   +H LV + G + E ++ N+L++ Y KCG
Sbjct: 225 LMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCG 284

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 K+F  M   + +TW  +ISG VQ+ L EE L  F +M    + P+++T+ S + 
Sbjct: 285 RFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLP 344

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + S  + L   RQIH  + + ++  D+ + SAL+D Y KC  V  A +IF     +D V 
Sbjct: 345 SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVV 404

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
            T ++ G+  NG   +A+++F  +VK  ++I PN ++  ++L V G   +L LG+++H  
Sbjct: 405 FTAMISGYLHNGLNIDALEMFRWLVK--VKISPNEITLVSILPVIGGLLALKLGRELHGF 462

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           IIK  F +   +   +I+MY+KCG +  + ++F R++ R+ VSWNSMI   A+  N   A
Sbjct: 463 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAA 522

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           ++++ +M + G+    V+  + L AC+++   + G      M + H ++      + ++D
Sbjct: 523 IDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIK-HSLALDVYSESTLID 581

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           M  + G L  A +  + M  K +++ W +++ A   HG
Sbjct: 582 MYAKCGNLKAAMNVFDTMKEK-NIVSWNSIIAAYGNHG 618



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 216/456 (47%), Gaps = 25/456 (5%)

Query: 95  LLSFYLKCDQMRNAVKLFD--DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +L  Y  C    N  K+F   D  +     WN+++S F+R G  +    F+ + L  G  
Sbjct: 72  ILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGV- 130

Query: 153 QLDQASFTIILSAC----DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             D ++F  ++ AC    +   +  +S  +  L    G +    V ++LI +Y + G   
Sbjct: 131 SPDVSTFPCLVKACVALKNFKGIEFLSDTVSSL----GMDCNEFVASSLIKAYLEYGKID 186

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              K+F  +  ++ + W  +++G  +    +  +K F  M +  I+PN++T+   +  C+
Sbjct: 187 VAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCA 246

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               +  G Q+HG++    L  +  I+++L+ MYSKCG  +DA ++F      D V+   
Sbjct: 247 SKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNC 306

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+ Q+G  EE++  F +M+ +G+  D    S++L       +L   +QIH  I++  
Sbjct: 307 MISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHS 366

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            + + F+ + LI+ Y KC  +  + K+FS+    + V + +MI+ +  +G    ALE++ 
Sbjct: 367 ISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFR 426

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------RISPRAEHYACVV 502
            +    + P ++T +S+L        V  G+  LK   E+H          R      V+
Sbjct: 427 WLVKVKISPNEITLVSILP-------VIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVI 479

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           DM  + G +  A     R+  K D++ W +++  C+
Sbjct: 480 DMYAKCGRMNLAYEIFGRLS-KRDIVSWNSMITRCA 514



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 156/316 (49%), Gaps = 6/316 (1%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM- 217
            +++L  C    L    K +H  V +     +      ++  Y  CGS S+  K+F  + 
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93

Query: 218 -RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
            R+ ++  W ++IS  V+  L  + L  + KM    ++P+  T+   V AC  L+     
Sbjct: 94  SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 153

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
             +   +  L +  +  + S+L+  Y + G ++ A ++F+   + D V   V+L G+A+ 
Sbjct: 154 EFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKC 213

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           G  +  ++ F  M     +I PN V+   VL V      + LG Q+H L++ S       
Sbjct: 214 GASDSVIKGFSLMRMD--QISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGS 271

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + N L++MYSKCG  +D+IK+F  M+  ++V+WN MI+ + + G   ++L  + EM   G
Sbjct: 272 IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSG 331

Query: 455 VEPTDVTFLSLLHACS 470
           V P  +TF SLL + S
Sbjct: 332 VLPDAITFSSLLPSVS 347



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 127/288 (44%), Gaps = 14/288 (4%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P  L+ L  +  CS L  L +G+Q+H  +    +  D   +  ++ MY+ CGS  +  ++
Sbjct: 31  PRRLSLL--LQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKM 88

Query: 315 F-EFAEELDGVS-MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVF 368
           F      L  +     I+  F + G   +A+  + KM+  G+  D    P +V A + + 
Sbjct: 89  FYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALK 148

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
                  L   + SL        N FV + LI  Y + G ++ + K+F R+  ++ V WN
Sbjct: 149 NFKGIEFLSDTVSSL----GMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWN 204

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
            M+  +A+ G     ++ +  M+++ + P  VTF  +L  C+   L++ G++ L  +  V
Sbjct: 205 VMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-LHGLVVV 263

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             +         ++ M  + G   +A     RM  + D + W  ++  
Sbjct: 264 SGLDFEGSIKNSLLSMYSKCGRFDDAIKLF-RMMSRADTVTWNCMISG 310



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 6/193 (3%)

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           E  P  +S +L      T L  GKQ+H+ +I +  + + + +  ++ MY+ CG   +  K
Sbjct: 28  ETLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGK 87

Query: 415 VFSRMAPRNSV--SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           +F R+  R S    WNS+I++F R G   +AL  Y +M   GV P   TF  L+ AC  V
Sbjct: 88  MFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC--V 145

Query: 473 GLVN-KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            L N KG+EFL        +       + ++      G +  A    +R+ ++ D ++W 
Sbjct: 146 ALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRV-LQKDCVIWN 204

Query: 532 ALLGACSIHGDSE 544
            +L   +  G S+
Sbjct: 205 VMLNGYAKCGASD 217


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 314/561 (55%), Gaps = 4/561 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           ++N+LL+ Y KC  +   + LF   P   ++ VSW ++++   R         FF     
Sbjct: 64  LFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRR 123

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G Y  +  +F+ +LSAC  +  S+  + +H LV+  G+  EV V +AL+  Y KC    
Sbjct: 124 SGVYP-NHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDML 182

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMAC 267
              KVF EM VRN+++W  +I G +QN+LY++ +  F  + L  L   + +++ S   AC
Sbjct: 183 MAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSAC 242

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L  G+Q+HG+  KL + + + I ++L DMY KCG   D  ++F      D V+  
Sbjct: 243 ANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWN 302

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           ++++ +  N   E+A   F  M + G   D    S+VL       +L  G  IH+ II+S
Sbjct: 303 IMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRS 362

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F  N  V + LI MY+KCG L D+ ++F     RN V W ++IAA  +HG+    +EL+
Sbjct: 363 GFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELF 422

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           E+M  EG++P  +TF+S+L ACSH G V +G  +  SM +VH I P  EHYAC+VD++ R
Sbjct: 423 EQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSR 482

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L  A+ FIE MP+KPD  VW ALL AC  H +  MGK  A KLF  +PD+P  Y+L+
Sbjct: 483 AGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLL 542

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            NI + +G   E  +  ++M+ +GV KE G SWI+I+   + F V DK H +   I+ +L
Sbjct: 543 CNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEML 602

Query: 628 AELLRLMIDEGYVPNKRFILH 648
            +L  L+  +GYV    F ++
Sbjct: 603 EKLKELVKKKGYVAETEFAIN 623



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 19/288 (6%)

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           LT L+S++ CS         QIH  L   AL S   + + L+++Y+KCGSV+    +F  
Sbjct: 30  LTSLNSLLNCSRTSK--HATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSS 87

Query: 318 A--EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           A  +  + VS T ++    +     +A+  F  M ++G+  +    SAVL      T+  
Sbjct: 88  APDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASV 147

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G+Q+HSL+ K  F +  FV + L++MY+KC D+  + KVF  M  RN VSWN+MI  F 
Sbjct: 148 HGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFL 207

Query: 436 RHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           ++    +A+  ++ + LE +   D V+F S+  AC++ G     +EF K   +VH ++ +
Sbjct: 208 QNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAG----NLEFGK---QVHGVALK 260

Query: 495 AEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              +  V       DM G+ GL  +          + DV+ W  ++ A
Sbjct: 261 LGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGAR-DVVTWNIMIMA 307



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 126/280 (45%), Gaps = 24/280 (8%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V  S + S  A  G+   G  +H   +K            V N   I NSL   Y KC  
Sbjct: 233 VSFSSVFSACANAGNLEFGKQVHGVALK----------LGVWNLVYINNSLSDMYGKCGL 282

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             +  KLF +   RD V+WN M+  ++ N  ++     F      G    D+AS++ +L 
Sbjct: 283 FNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIP-DEASYSSVLH 341

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           +C          +IH  +   G+ + + V ++LIT Y KCGS     ++F E   RNV+ 
Sbjct: 342 SCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVC 401

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR------- 277
           WTA+I+   Q+      ++LF +M    I P+ +T++S + ACS    + EG        
Sbjct: 402 WTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMI 461

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           ++HGI      +   CI    +D+ S+ G ++ A +  E 
Sbjct: 462 KVHGIY--PGHEHYACI----VDLLSRAGELDRAKRFIEL 495


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 206/615 (33%), Positives = 340/615 (55%), Gaps = 46/615 (7%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWN 124
           LHA  ++T          ++P+ +++ +++LS Y   + + +++ +F+ +P    T++W 
Sbjct: 27  LHAQILRT----------SLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAWK 75

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           +++  +  +G F     FF + L  G Y  D   F  +L +C   +     + +H  +  
Sbjct: 76  SIIRCYTSHGLFLHSLSFFIQMLASGKYP-DHNVFPSVLKSCTLMKDLRFGESVHGCIIR 134

Query: 185 CGYEEEVTVGNALITSY---------------FKCGSSS--------------SGRKVFG 215
            G   ++   NAL+  Y               F  G +S              S RKVF 
Sbjct: 135 LGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFE 194

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  R++++W  VISG  QN ++E+ L +  +M    + P+S T  S +   +    L +
Sbjct: 195 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLK 254

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G++IHG   +    +D+ I S+L+DMY+KC  V+D+ ++F    + DG+S   I+ G  Q
Sbjct: 255 GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQ 314

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           NG  +E ++ F +M+ A  +I PN V  S+++      T+L LGKQ+H  II+S F  N 
Sbjct: 315 NGMFDEGLKFFQQMLIA--KIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 372

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+ + L++MY+KCG++  +  +F +M   + VSW +MI  +A HG+ + A+ L++ M++E
Sbjct: 373 FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVE 432

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           GV+P  V F+++L ACSH GLV++  ++  SMT+ +RI P  EHYA V D++GR G L E
Sbjct: 433 GVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEE 492

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A  FI  M ++P   VW  LL AC +H + E+ +  ++KLF   P +   Y+L++NIYS 
Sbjct: 493 AYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSA 552

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +GRWK+  K    M++ G+ K+   SWIEI+ +VH+FV  DK HP  D I+  L  LL  
Sbjct: 553 AGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQ 612

Query: 634 MIDEGYVPNKRFILH 648
           M  EGYV +   +LH
Sbjct: 613 MEREGYVLDTTEVLH 627



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 138/326 (42%), Gaps = 45/326 (13%)

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSM 326
           S +++  + +Q+H  + + +L S   + S ++ +YS    + D+  IF         ++ 
Sbjct: 16  SSVKSKSQAKQLHAQILRTSLPSPSLL-STILSIYSNLNLLHDSLLIFNSLPSPPTTLAW 74

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+  +  +G    ++  F++M+ +G   D N+  +VL    +   L  G+ +H  II+
Sbjct: 75  KSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIR 134

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDS-----------------------------IKVFS 417
                + +  N L+NMYSK   LE+                               KVF 
Sbjct: 135 LGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFE 194

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  R+ VSWN++I+  A++G    AL +  EM    + P   T  S+L   +    + K
Sbjct: 195 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLK 254

Query: 478 GMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
           G        E+H  + R  + A V      +DM  +   + ++      +P + D + W 
Sbjct: 255 G-------KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWN 306

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQ 557
           +++  C  +G  + G    +++ +A+
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAK 332



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+V  S ++   A     HLG  LH   I++   FD  NV+       I ++L+  Y KC
Sbjct: 336 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRS--RFDG-NVF-------IASALVDMYAKC 385

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R A  +FD M + D VSW  M+ G+  +G        FKR +E+   + +  +F  +
Sbjct: 386 GNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR-MEVEGVKPNYVAFMAV 444

Query: 163 LSACDRSEL 171
           L+AC  + L
Sbjct: 445 LTACSHAGL 453


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 319/568 (56%), Gaps = 4/568 (0%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFD--DMPMRDTVSWNTMVSGFLRNGEFDMG 139
           + N  +   ++N+L++ Y KC  +  A+ LF       +  V+W ++++           
Sbjct: 170 INNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQA 229

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
              F +    G Y  +Q +F+ ILSA   + + L  + +H L++  G++  + VG AL+ 
Sbjct: 230 LSLFNQMRCSGPYP-NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVD 288

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSL 258
            Y KC    S  +VF +M  RN+++W ++I G   N LY+  + +F   +    + PN +
Sbjct: 289 MYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEV 348

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           +  S + AC+ +  L  GRQ+HG++ K  L     + ++LMDMY KC   ++  ++F+  
Sbjct: 349 SVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCV 408

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            + D V+  V+++GF QN   EEA   F  M + GI  D    S VL       +L  G 
Sbjct: 409 GDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGT 468

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            IH  IIK  +  N  +   LI MY+KCG L D+ +VF  +   N +SW +MI+A+  HG
Sbjct: 469 AIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHG 528

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              + +EL+E M  EG+EP+ VTF+ +L ACSH G V +G+    SM ++H ++P  EHY
Sbjct: 529 CANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHY 588

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
           AC+VD++GRAG L EA+ FIE MP+KP   VW ALLGAC  +G+ +MG+ AAE+LF  +P
Sbjct: 589 ACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEP 648

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
            +P  Y+L+AN+ + SGR +E  +  + M   GV KE G SWI+++     F   D+ H 
Sbjct: 649 YNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHS 708

Query: 619 QADTIHGVLAELLRLMIDEGYVPNKRFI 646
            +D I+ +L +L +L+  +GYV    F+
Sbjct: 709 SSDEIYKMLEKLEKLVKKKGYVAETEFV 736



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 207/422 (49%), Gaps = 10/422 (2%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG--EMRVRNVITWTAVISGL 232
           +  IH  + +  Y     + N LI  Y KCG  +    +F       + ++TWT++I+ L
Sbjct: 161 ATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHL 220

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
               ++ + L LF +M      PN  T+ S + A +    +  G+Q+H ++ K    +++
Sbjct: 221 SHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANI 280

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +AL+DMY+KC  +  A ++F+   E + VS   ++VGF  N   + A+ +F  +++ 
Sbjct: 281 FVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLRE 340

Query: 353 GIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
              I PN   VS+VL        L  G+Q+H +++K       +V N L++MY KC   +
Sbjct: 341 KTVI-PNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFD 399

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           + +K+F  +  R+ V+WN ++  F ++    +A   +  M+ EG+ P + +F ++LH+ +
Sbjct: 400 EGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSA 459

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            +  +++G      + ++  +         ++ M  + G L++A    E +    +V+ W
Sbjct: 460 SLAALHQGTAIHDQIIKLGYVKNMCI-LGSLITMYAKCGSLVDAYQVFEGIE-DHNVISW 517

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRMK 588
            A++ A  +HG +       E + L++   P+    +  + +CS  GR +E       MK
Sbjct: 518 TAMISAYQLHGCANQVIELFEHM-LSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMK 576

Query: 589 EM 590
           ++
Sbjct: 577 KI 578



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSWNSM 430
           SL    QIH+ II +++TS PF+ N LIN+Y+KCG L  ++ +FS      +  V+W S+
Sbjct: 157 SLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSL 216

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I   +      +AL L+ +M+  G  P   TF S+L A +   +V  G + L S+   H 
Sbjct: 217 ITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQ-LHSLIHKHG 275

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                     +VDM  +   +  A    ++MP + +++ W +++
Sbjct: 276 FDANIFVGTALVDMYAKCADMHSAVRVFDQMPER-NLVSWNSMI 318



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L +    S +L  SA     H G ++H   IK         +  V N  ++  SL++ Y
Sbjct: 444 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIK---------LGYVKNMCIL-GSLITMY 493

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +A ++F+ +   + +SW  M+S +  +G  +     F+  L  G  +    +F
Sbjct: 494 AKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGI-EPSHVTF 552

Query: 160 TIILSACDRS 169
             +LSAC  +
Sbjct: 553 VCVLSACSHT 562


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/600 (33%), Positives = 330/600 (55%), Gaps = 12/600 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LL + A  G    G ++HA                + +  +   +L + Y KC +  +
Sbjct: 63  TSLLKLCAARGDLATGRAVHAQLA----------ARGIDSEALAATALANMYAKCRRPAD 112

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD MP+RD V+WN +V+G+ RNG   M      R  E    + D  +   +L AC 
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            +      +  H      G EE V V  A++ +Y KCG   + R VF  M  +N ++W A
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I G  QN    E L LF +M    ++   ++ L+++ AC  L  L EG ++H +L ++ 
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L S++ + +AL+ MYSKC  V+ A  +F+  +    VS   +++G AQNG  E+A++LF 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 348 KMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           +M    ++ D   +VS +  +  +   L   + IH   I+     + +V   LI+MY+KC
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKC 411

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  +  +F+    R+ ++WN+MI  +  HG G  A+EL+EEMK  G+ P + TFLS+L
Sbjct: 412 GRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVL 471

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G E+  SM E + + P  EHY  +VD++GRAG L EA +FI++MP+ P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + V+ A+LGAC +H + E+ + +A+K+F   P     ++L+ANIY+ +  WK+ A+    
Sbjct: 532 LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTA 591

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           M++ G+ K  G S I+++ ++H+F      H QA  I+  LA+L+  +   GYVP+   I
Sbjct: 592 MEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI 651



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 195/396 (49%), Gaps = 8/396 (2%)

Query: 158 SFTIILSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +FT +L  C  R +L+   + +H  +   G + E     AL   Y KC   +  R+VF  
Sbjct: 61  TFTSLLKLCAARGDLA-TGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCE 275
           M VR+ + W A+++G  +N L    +++ V+M       P+S+T +S + AC+  +AL  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
            R+ H    +  L+  + + +A++D Y KCG +  A  +F++    + VS   ++ G+AQ
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG   EA+ LF +MV+ G+++    V A L   G    L  G ++H L+++    SN  V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N LI MYSKC  ++ +  VF  +  R  VSWN+MI   A++G    A+ L+  M+LE V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P   T +S++ A + +    +          +H +         ++DM  + G +  AR
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                   +  V+ W A++     HG    GK A E
Sbjct: 419 ILFNSARER-HVITWNAMIHGYGSHG---FGKAAVE 450



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 3/305 (0%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L  FV M      P   T+ S +  C+    L  GR +H  L    + S+    +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPN 359
           MY+KC    DA ++F+     D V+   ++ G+A+NG    AM++ V+M  + G   D  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            + +VL       +L   ++ H+  I+S       V   +++ Y KCGD+  +  VF  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             +NSVSWN+MI  +A++G+  +AL L+  M  EGV+ TDV+ L+ L AC  +G +++GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
              + +  +  +         ++ M  +   +  A    + +  +  V  W A++  C+ 
Sbjct: 283 RVHELLVRIG-LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQV-SWNAMILGCAQ 340

Query: 540 HGDSE 544
           +G SE
Sbjct: 341 NGCSE 345


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/593 (34%), Positives = 335/593 (56%), Gaps = 20/593 (3%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +HA  I++           + NA + I N L++ Y KC  + +A  +F  M  +D+V
Sbjct: 407 GSEVHAFLIRS----------GLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSV 456

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII--LSACDRSELSLVSKMIH 179
           +WN+M++G  +N +F      F+   E+   +L  ++FT+I  LS+C       V + +H
Sbjct: 457 TWNSMITGLDQNKQFLEAVKTFQ---EMRRTELYPSNFTMISALSSCASLGWISVGEQLH 513

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           C     G + +V+V NAL+  Y +CG     +K F  M   + ++W ++I  L  ++   
Sbjct: 514 CEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSM 573

Query: 240 -EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E ++ F+ M     +PN +T+++ + A S L     G+QIH ++ K  + +D  IE+AL
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENAL 633

Query: 299 MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           +  Y KCG +     IF   ++  D VS   ++ G+  N    +AM +   M++ G  +D
Sbjct: 634 LACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLD 693

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
               + VL       +L  G ++H   +++   S+  + + L++MY+KCG ++ + + F 
Sbjct: 694 GFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFE 753

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  RN  SWNSMI+ +ARHG+G K+L+L+ +MKL+G  P  VTF+ +L ACSH GLVN+
Sbjct: 754 MMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNE 813

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G     SM+E++ ++PR EH++C+VD++GR G L +   F+ +MPVKP+VL+W+ +LGAC
Sbjct: 814 GFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGAC 873

Query: 538 SIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
                 ++ +G+ AAE L   +P +   YIL++N+Y+  G+W + AK    M++  V KE
Sbjct: 874 CRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKE 933

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G SW+ ++  VH FV  DK HP+ D I+  L EL   M   GY+P  RF L+
Sbjct: 934 AGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALY 986



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 247/490 (50%), Gaps = 37/490 (7%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF---KRSL 147
           + ++L+S + K   +  A  +F  M  R+ VS N ++ G +R    +     F   K S+
Sbjct: 321 VGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSV 380

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKM----IHCLVYLCGY-EEEVTVGNALITSYF 202
           EL     +  S+ IIL+A     +    K     +H  +   G    ++ +GN LI  Y 
Sbjct: 381 EL-----NPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYA 435

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG+ +    VF  M  ++ +TW ++I+GL QN+ + E +K F +M    + P++ T +S
Sbjct: 436 KCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMIS 495

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ +C+ L  +  G Q+H    KL L  D+ + +AL+ +Y +CG V++  + F    + D
Sbjct: 496 ALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYD 555

Query: 323 GVSMTVILVGFAQNGFEE-EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGK 378
            VS   ++   A +     EA++ F+ M++AG   DPN V+ +  +    +SL    LGK
Sbjct: 556 HVSWNSLIGALADSEPSMLEAVESFLVMMRAG--WDPNRVTFIT-ILAAVSSLSLHELGK 612

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARH 437
           QIH+L++K +  ++  + N L+  Y KCGD+     +FSRM+ R + VSWNSMI+ +  +
Sbjct: 613 QIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHN 672

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               KA+++   M  +G      TF ++L AC+ V  + +GM       EVH  S RA  
Sbjct: 673 ELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGM-------EVHGCSVRACL 725

Query: 498 Y------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG--ACSIHGDSEMGKYA 549
                  + +VDM  + G +  A  F E MP + ++  W +++   A   HG   +  +A
Sbjct: 726 ESDIVIGSALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGHGTKSLDLFA 784

Query: 550 AEKLFLAQPD 559
             KL    PD
Sbjct: 785 QMKLQGPLPD 794



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 275/578 (47%), Gaps = 57/578 (9%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   + N+L++ Y +   + +  K+FD+MP+R+ VSW+ ++SG+ RN   +     F++ 
Sbjct: 106 NDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKM 165

Query: 147 LELGFYQLDQASFTIILSACDR-SELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKC 204
           +  GF   +  +F  ++ AC    E  L   M IH L+    Y  +VT  N LI+ Y   
Sbjct: 166 VSDGFMP-NHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNA 224

Query: 205 -GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL----INPNSLT 259
            G     R+ F  +  RN+++  ++IS   Q         +F  M   +    + PN  T
Sbjct: 225 LGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYT 284

Query: 260 YLSSV-----MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           + S +     +A SGL  L    Q+   + K     DL + SAL+  ++K GS+  A  I
Sbjct: 285 FGSLISATCSLANSGLVLL---EQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNI 341

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----V 370
           F+     + VS+  +++G  +    EEA++LF++M K  +E++PN    +L  F     +
Sbjct: 342 FQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYMIILTAFPEFHVL 400

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           +     G ++H+ +I+S   +    + NGLINMY+KCG + D+  VF  M  ++SV+WNS
Sbjct: 401 ENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNS 460

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG----MEFLKSM 485
           MI    ++    +A++ ++EM+   + P++ T +S L +C+ +G ++ G     E LK  
Sbjct: 461 MITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLG 520

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
            ++      A     ++ + G  G + E +     M +  D + W +L+GA +   DSE 
Sbjct: 521 LDLDVSVSNA-----LLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGALA---DSEP 571

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
               A + FL         ++M      +G    R   I  +  +     + +S  E+ K
Sbjct: 572 SMLEAVESFL---------VMMR-----AGWDPNRVTFITILAAV-----SSLSLHELGK 612

Query: 606 QVHSFVVDDKMHPQADT-IHGVLAELLRLMIDEGYVPN 642
           Q+H+ V+  K +  ADT I   L        D GY  N
Sbjct: 613 QIHALVL--KRNVAADTAIENALLACYGKCGDMGYCEN 648



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 185/375 (49%), Gaps = 25/375 (6%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H  ++  G+  ++ + N LI  Y + G   SGRKVF EM +RN+++W+ +ISG  +N++
Sbjct: 95  LHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRM 154

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDLCIE 295
             E  +LF KM      PN   + S + AC   G   L  G QIHG++ K    +D+   
Sbjct: 155 PNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTAS 214

Query: 296 SALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-- 352
           + L+ MY    G V+ A + F+     + VS+  ++  + Q G    A  +F  M K   
Sbjct: 215 NVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVM 274

Query: 353 GIEIDPN------MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           G  + PN      ++SA   +   ++ L L +Q+ + + KS F  + +V + L++ ++K 
Sbjct: 275 GDGLKPNEYTFGSLISATCSL--ANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKA 332

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  +  +F +M+ RN VS N +I    R   G +A+EL+ EMK + VE    +++ +L
Sbjct: 333 GSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMK-DSVELNPNSYMIIL 391

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-------VVDMVGRAGLLIEARSFIE 519
            A     ++  G    +  +EVH    R+            +++M  + G + +A   + 
Sbjct: 392 TAFPEFHVLENGK---RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDA-CVVF 447

Query: 520 RMPVKPDVLVWQALL 534
           R+    D + W +++
Sbjct: 448 RLMDNKDSVTWNSMI 462



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 157/312 (50%), Gaps = 31/312 (9%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +  ++H  L+K    +DL + + L+++Y++ G +    ++F+     + VS + ++ G+ 
Sbjct: 91  DAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL------GVFGVDTSLGLGKQIHSLIIKSD 388
           +N    EA +LF KMV  G   +     +V+      G +G    L  G QIH L+ K+ 
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYG----LKFGMQIHGLMSKTQ 206

Query: 389 FTSNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           + ++   +N LI+MY    G ++ + + F  + PRN VS NSMI+ + + G+   A +++
Sbjct: 207 YVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIF 266

Query: 448 EEMKLE----GVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKS-MTEVHRISPRAEHY--A 499
             M+ E    G++P + TF SL+ A CS   L N G+  L+  +T V +     + Y  +
Sbjct: 267 STMQKEVMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVEKSGFLHDLYVGS 323

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +V    +AG +  A++  ++M  +  V +   ++G        + G+ A E LF+   D
Sbjct: 324 ALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVR----QKRGEEAVE-LFMEMKD 378

Query: 560 S----PAPYILM 567
           S    P  Y+++
Sbjct: 379 SVELNPNSYMII 390



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 15/232 (6%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ L ++S+   H  LG  +HA  +K           NV   T I N+LL+ Y KC  M 
Sbjct: 596 ITILAAVSSLSLH-ELGKQIHALVLKR----------NVAADTAIENALLACYGKCGDMG 644

Query: 107 NAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
               +F  M  R D VSWN+M+SG++ N             ++ G  +LD  +F  +LSA
Sbjct: 645 YCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKG-QRLDGFTFATVLSA 703

Query: 166 CDRSELSLVSKMIH-CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           C           +H C V  C  E ++ +G+AL+  Y KCG      + F  M  RN+ +
Sbjct: 704 CATVATLERGMEVHGCSVRAC-LESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYS 762

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           W ++ISG  ++    + L LF +M L    P+ +T++  + ACS    + EG
Sbjct: 763 WNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEG 814


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/596 (33%), Positives = 329/596 (55%), Gaps = 12/596 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LL + A  G    G ++HA                + +  +   +L + Y KC +  +
Sbjct: 63  TSLLKLCAARGDLATGRAVHAQLA----------ARGIDSEALAATALANMYAKCRRPAD 112

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD MP+RD V+WN +V+G+ RNG   M      R  E    + D  +   +L AC 
Sbjct: 113 ARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACA 172

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            +      +  H      G EE V V  A++ +Y KCG   + R VF  M  +N ++W A
Sbjct: 173 NARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNA 232

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I G  QN    E L LF +M    ++   ++ L+++ AC  L  L EG ++H +L ++ 
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L S++ + +AL+ MYSKC  V+ A  +F+  +    VS   +++G AQNG  E+A++LF 
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352

Query: 348 KMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           +M    ++ D   +VS +  +  +   L   + IH   I+     + +V   LI+MY+KC
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKC 411

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  +  +F+    R+ ++WN+MI  +  HG G  A+EL+EEMK  G+ P + TFLS+L
Sbjct: 412 GRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVL 471

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G E+  SM E + + P  EHY  +VD++GRAG L EA +FI++MP+ P 
Sbjct: 472 SACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPG 531

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + V+ A+LGAC +H + E+ + +A+K+F   P     ++L+ANIY+ +  WK+ A+    
Sbjct: 532 LSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTA 591

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           M++ G+ K  G S I+++ ++H+F      H QA  I+  LA+L+  +   GYVP+
Sbjct: 592 MEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPD 647



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 195/396 (49%), Gaps = 8/396 (2%)

Query: 158 SFTIILSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +FT +L  C  R +L+   + +H  +   G + E     AL   Y KC   +  R+VF  
Sbjct: 61  TFTSLLKLCAARGDLA-TGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCE 275
           M VR+ + W A+++G  +N L    +++ V+M       P+S+T +S + AC+  +AL  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
            R+ H    +  L+  + + +A++D Y KCG +  A  +F++    + VS   ++ G+AQ
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG   EA+ LF +MV+ G+++    V A L   G    L  G ++H L+++    SN  V
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSV 299

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N LI MYSKC  ++ +  VF  +  R  VSWN+MI   A++G    A+ L+  M+LE V
Sbjct: 300 MNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENV 359

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P   T +S++ A + +    +          +H +         ++DM  + G +  AR
Sbjct: 360 KPDSFTLVSVIPALADISDPLQARWIHGYSIRLH-LDQDVYVLTALIDMYAKCGRVNIAR 418

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                   +  V+ W A++     HG    GK A E
Sbjct: 419 ILFNSARER-HVITWNAMIHGYGSHG---FGKAAVE 450



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 149/305 (48%), Gaps = 3/305 (0%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L  FV M      P   T+ S +  C+    L  GR +H  L    + S+    +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPN 359
           MY+KC    DA ++F+     D V+   ++ G+A+NG    AM++ V+M  + G   D  
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            + +VL       +L   ++ H+  I+S       V   +++ Y KCGD+  +  VF  M
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             +NSVSWN+MI  +A++G+  +AL L+  M  EGV+ TDV+ L+ L AC  +G +++GM
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
              + +  +  +         ++ M  +   +  A    + +  +  V  W A++  C+ 
Sbjct: 283 RVHELLVRIG-LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQV-SWNAMILGCAQ 340

Query: 540 HGDSE 544
           +G SE
Sbjct: 341 NGCSE 345


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 319/587 (54%), Gaps = 15/587 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LHA  IK++            +     N+L+S Y    Q+ +A  +F  +P 
Sbjct: 274 GDIDLGRQLHAHVIKSW----------FGHHLTSQNALISMYTNFGQIEHASNVFTRIPT 323

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL-VSK 176
           +D +SW TM++G+++ G        F+  L  G YQ ++  F  + SAC  S L L   K
Sbjct: 324 KDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACS-SLLELEYGK 382

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H +    G    V  G +L   Y K G   S +  F +++  ++++W A+I+    N 
Sbjct: 383 QVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNG 442

Query: 237 LYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
              E +  F +M H+GL  P+S+TY+S +  C     L +GRQIH  + K+    ++ + 
Sbjct: 443 DANEAIDFFRQMIHIGL-TPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVC 501

Query: 296 SALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
           ++L+ MY+KC  + DA  +F + +   + VS   IL    Q   E E  +L+ +M  +G 
Sbjct: 502 NSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGN 561

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           + D   ++ +LG     TSLG+G Q+H   IKS    +  V NGLI+MY+KCG L+ +  
Sbjct: 562 KPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARD 621

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VF      + VSW+S+I  +A+ G G +AL L+  M   GV+P +VT+L  L ACSH+GL
Sbjct: 622 VFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGL 681

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V +G    KSM   H I P  EH++C+VD++ RAG L EA +FI++  +  D+  W+ LL
Sbjct: 682 VEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLL 741

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
            AC  H + ++ +  A  +    P + A  +++ NI++ +G W+E AK  K MK+MGV K
Sbjct: 742 AACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQK 801

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
             G SWIE++ + H F  +D  HPQ + I+ +L EL   ++D+GY P
Sbjct: 802 VPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWSQVLDDGYDP 848



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 235/497 (47%), Gaps = 27/497 (5%)

Query: 56  KEGHFHLGPSLHASFIKTFEPF----------DNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           K  + H  PS + S +     F          D+    N   + ++ N +++ Y KC  M
Sbjct: 151 KNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSM 210

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           ++A K+FD M + + VSW +M+SG+ +NG+ +     + +    G +  DQ +F  ++ A
Sbjct: 211 KDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFP-DQLTFGSVIKA 269

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  +    + + +H  V    +   +T  NALI+ Y   G       VF  +  +++I+W
Sbjct: 270 CYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISW 329

Query: 226 TAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
             +I+G +Q     E L LF   +  G   PN   + S   ACS L  L  G+Q+HG+  
Sbjct: 330 GTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCV 389

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K  L+ ++    +L DMY+K G +  A   F   +  D VS   I+  FA NG   EA+ 
Sbjct: 390 KFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAID 449

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
            F +M+  G+  D     ++L   G    L  G+QIHS I+K  F     V N L+ MY+
Sbjct: 450 FFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLLTMYT 509

Query: 405 KCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           KC  L D++ VF  ++   N VSWN++++A  +     +   LY+EM   G +P  +T  
Sbjct: 510 KCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITIT 569

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYAC--VVDMVGRAGLLIEARSF 517
           +LL  C+ +  +  G        +VH  S ++    +   C  ++DM  + G L  AR  
Sbjct: 570 TLLGTCAELTSLGVG-------NQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDV 622

Query: 518 IERMPVKPDVLVWQALL 534
            +      D++ W +L+
Sbjct: 623 FDSTQ-NLDIVSWSSLI 638



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 194/389 (49%), Gaps = 8/389 (2%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             + +++T ++ AC        +K IH  V    Y+  + + N +I  Y KCGS    RK
Sbjct: 156 HFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARK 215

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M++ NV++WT++ISG  QN    + + ++++M      P+ LT+ S + AC     
Sbjct: 216 VFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGD 275

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  GRQ+H  + K      L  ++AL+ MY+  G +E A  +F      D +S   ++ G
Sbjct: 276 IDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITG 335

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + Q G+  EA+ LF  +++ G    PN  +  +V         L  GKQ+H + +K    
Sbjct: 336 YIQLGYRVEALYLFRDLLRQG-TYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFGLR 394

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            N F    L +MY+K G L  +   F ++   + VSWN++IAAFA +G+  +A++ + +M
Sbjct: 395 RNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQM 454

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRA 508
              G+ P  +T++SLL  C     +N+G +     + + +I    E   C  ++ M  + 
Sbjct: 455 IHIGLTPDSITYISLLCTCGSPVRLNQGRQI---HSYIVKIGFDKEITVCNSLLTMYTKC 511

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGAC 537
             L +A +    +    +++ W A+L AC
Sbjct: 512 SHLHDALNVFRDISRNANLVSWNAILSAC 540



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 193/379 (50%), Gaps = 23/379 (6%)

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSL----TYLSSVMACSGLQALCEGRQIHGILWKLA 287
           L +   Y+E L+ F   HL   N NS     TY S V+AC+  ++L   ++IH  + K  
Sbjct: 133 LCKQHHYKEALEAF-DFHLK--NSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSN 189

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            Q  + +++ +++MY KCGS++DA ++F+  +  + VS T ++ G++QNG   +A+ +++
Sbjct: 190 YQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYI 249

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M ++G   D     +V+    +   + LG+Q+H+ +IKS F  +    N LI+MY+  G
Sbjct: 250 QMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFG 309

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTDVTFLSLL 466
            +E +  VF+R+  ++ +SW +MI  + + G   +AL L+ ++  +G  +P +  F S+ 
Sbjct: 310 QIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVF 369

Query: 467 HACSHVGLVNKGMEFLKSMTEVH----RISPRAEHYA--CVVDMVGRAGLLIEARSFIER 520
            ACS +  +  G        +VH    +   R   +A   + DM  + G L  A+    +
Sbjct: 370 SACSSLLELEYG-------KQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQ 422

Query: 521 MPVKPDVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
           +   PD++ W A++ A + +GD+ E   +  + + +        YI +        R  +
Sbjct: 423 IK-NPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQ 481

Query: 580 RAKAIKRMKEMGVDKETGI 598
             +    + ++G DKE  +
Sbjct: 482 GRQIHSYIVKIGFDKEITV 500


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 321/605 (53%), Gaps = 17/605 (2%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           + + LL +   E    +G  +H   +K+    D                L + Y KC Q+
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD----------LFAMTGLENMYAKCRQV 186

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
             A K+FD MP RD VSWNT+V+G+ +NG   M     K   E       + SF  I+S 
Sbjct: 187 NEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENL----KPSFITIVSV 242

Query: 166 CDR-SELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
               S L L+S  K IH      G++  V +  AL+  Y KCGS  + R++F  M  RNV
Sbjct: 243 LPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNV 302

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W ++I   VQN+  +E + +F KM    + P  ++ + ++ AC+ L  L  GR IH +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             +L L  ++ + ++L+ MY KC  V+ A  +F   +    VS   +++GFAQNG   +A
Sbjct: 363 SVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDA 422

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +  F +M    ++ D     +V+      +     K IH ++++S    N FV   L++M
Sbjct: 423 LNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDM 482

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG +  +  +F  M+ R+  +WN+MI  +  HG G  ALEL+EEM+   ++P  VTF
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           LS++ ACSH GLV  G++    M E + I    +HY  +VD++GRAG L EA  FI +MP
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           VKP V V+ A+LGAC IH +    + AAE+LF   PD    ++L+ANIY  +  W++  +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               M   G+ K  G S +EI+ +VHSF      HP +  I+  L +L+  + + GYVP+
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPD 722

Query: 643 KRFIL 647
              +L
Sbjct: 723 TNLVL 727



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 244/490 (49%), Gaps = 24/490 (4%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR----SLELG 150
           L+S + +   +  A ++F+ +  +  V ++TM+ GF +  + D    FF R     +E  
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134

Query: 151 FYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            Y     +FT +L  C D +EL  V K IH L+   G+  ++     L   Y KC   + 
Sbjct: 135 VY-----NFTYLLKVCGDEAELR-VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNE 188

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RKVF  M  R++++W  +++G  QN +    L++   M    + P+ +T +S + A S 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ +  G++IHG   +    S + I +AL+DMY+KCGS+E A Q+F+   E + VS   +
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIK 386
           +  + QN   +EAM +F KM+  G++  P  VS V+G       LG    G+ IH L ++
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVK--PTDVS-VMGALHACADLGDLERGRFIHKLSVE 365

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                N  V N LI+MY KC +++ +  +F ++  R  VSWN+MI  FA++G    AL  
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M+   V+P   T++S++ A + + + +   +++  +     +         +VDM  
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRSCLDKNVFVTTALVDMYA 484

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--Y 564
           + G ++ AR   + M  +  V  W A++     HG    GK A E     Q  +  P   
Sbjct: 485 KCGAIMIARLIFDMMSER-HVTTWNAMIDGYGTHG---FGKAALELFEEMQKGTIKPNGV 540

Query: 565 ILMANIYSCS 574
             ++ I +CS
Sbjct: 541 TFLSVISACS 550



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 162/303 (53%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + I  LV+  G  +E      L++ + + GS     +VF  +  +  + +  ++ G  + 
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
              ++ L+ FV+M    + P    +   +  C     L  G++IHG+L K     DL   
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           + L +MY+KC  V +A ++F+   E D VS   I+ G++QNG    A+++   M +  ++
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                + +VL        + +GK+IH   ++S F S   ++  L++MY+KCG LE + ++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  RN VSWNSMI A+ ++ N  +A+ ++++M  EGV+PTDV+ +  LHAC+ +G +
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 476 NKG 478
            +G
Sbjct: 354 ERG 356



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 184/340 (54%), Gaps = 20/340 (5%)

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS L+ L   RQI  +++K  L  +   ++ L+ ++ + GSV++A ++FE  +    V  
Sbjct: 47  CSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 103

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L GFA+    ++A+Q FV+M    +E      + +L V G +  L +GK+IH L++K
Sbjct: 104 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F+ + F   GL NMY+KC  + ++ KVF RM  R+ VSWN+++A ++++G    ALE+
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----- 501
            + M  E ++P+ +T +S+L A S + L++ G        E+H  + R+   + V     
Sbjct: 224 VKSMCEENLKPSFITIVSVLPAVSALRLISVG-------KEIHGYAMRSGFDSLVNISTA 276

Query: 502 -VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
            VDM  + G L  AR   + M ++ +V+ W +++ A   + + +      +K+ L +   
Sbjct: 277 LVDMYAKCGSLETARQLFDGM-LERNVVSWNSMIDAYVQNENPKEAMLIFQKM-LDEGVK 334

Query: 561 PAPYILMANIYSCSGRWK-ERAKAIKRMK-EMGVDKETGI 598
           P    +M  +++C+     ER + I ++  E+G+D+   +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 222/674 (32%), Positives = 354/674 (52%), Gaps = 67/674 (9%)

Query: 41  LDNYVDIS-RLLSISAKEGHFHLGPSLHAS----FIKTFEPFDNQNVYNVPNATV-IWNS 94
           LD+ +++S R+L    +  HF L   L A       +    F      N   + V I N+
Sbjct: 136 LDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 195

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           L++ Y +C  +  A  +FD++  R   D +SWN++VS  +++         F + + L  
Sbjct: 196 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK-MTLIV 254

Query: 152 YQL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           ++       D  S   IL AC   +    +K +H      G   +V VGNALI +Y KCG
Sbjct: 255 HEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCG 314

Query: 206 SSSSGRKVFGEMRVRNVI-----------------------------------TWTAVIS 230
              +  KVF  M  ++V+                                   TWTAVI+
Sbjct: 315 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIA 374

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL-- 288
           G  Q     E L LF +M      PN +T +S + AC+ L A  +G +IH    K  L  
Sbjct: 375 GYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLT 434

Query: 289 --------QSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGF 338
                     DL + +AL+DMYSKC S + A  IF+    EE + V+ TV++ G AQ G 
Sbjct: 435 LDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 494

Query: 339 EEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPF 394
             +A++LFV+M+     + PN   +S +L       ++ +GKQIH+ +++     +S  F
Sbjct: 495 SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF 554

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V N LI+MYSKCGD++ +  VF  M+ ++++SW SM+  +  HG G +AL+++++M+  G
Sbjct: 555 VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 614

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
             P D+TFL +L+ACSH G+V++G+ +  SM+  + ++PRAEHYAC +D++ R+G L +A
Sbjct: 615 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 674

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              ++ MP++P  +VW ALL AC +H + E+ ++A  KL     ++   Y L++NIY+ +
Sbjct: 675 WRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 734

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           GRWK+ A+    MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +L  L+  +
Sbjct: 735 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 794

Query: 635 IDEGYVPNKRFILH 648
              GYVP   F LH
Sbjct: 795 KAMGYVPETNFALH 808



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 228/507 (44%), Gaps = 63/507 (12%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ YL C     A+ + + +     V WN ++   ++ G  D       R L  G  + 
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRP 153

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +   +L AC            H L+   G+E  V + NAL+  Y +CGS      +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 215 GEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSSVM 265
            E+  R   +VI+W +++S  V++      L LF KM    H    N  S  ++ ++ + 
Sbjct: 214 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 273

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC  L+A+ + +++HG   +     D+ + +AL+D Y+KCG +E+A ++F   E  D VS
Sbjct: 274 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 333

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---------------------------- 357
              ++ G++Q+G  E A +LF  M K  I +D                            
Sbjct: 334 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393

Query: 358 -----PNMVSAVLGVFGVDTSLGL---GKQIHS-------LIIKSDF---TSNPFVNNGL 399
                PN V+ ++ V     SLG    G +IH+       L + +DF     +  V N L
Sbjct: 394 FSGSLPNCVT-IISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 400 INMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GV 455
           I+MYSKC   + +  +F    +  RN V+W  MI   A++G+   AL+L+ EM  E  GV
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEA 514
            P   T   +L AC+H+  +  G +    +   HR    A   A C++DM  + G +  A
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG 541
           R   + M  K   + W +++    +HG
Sbjct: 573 RHVFDSMSQK-SAISWTSMMTGYGMHG 598



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 210/475 (44%), Gaps = 75/475 (15%)

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           ++G  ++ SY  CG++     V   +     + W  +I   ++    +  + +  +M   
Sbjct: 90  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
              P+  T    + AC  L +   G   HG++     +S++ I +AL+ MYS+CGS+E+A
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 312 WQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
             IF+   +    D +S   I+    ++     A+ LF KM     E   N  S ++ + 
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 369 GVDTSLG------LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            +  + G        K++H   I++    + FV N LI+ Y+KCG +E+++KVF+ M  +
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-------------------------- 456
           + VSWN+M+A +++ GN   A EL++ M+ E +                           
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 457 ---------PTDVTFLSLLHACSHVGLVNKGMEF----LKS--MTEVHRISPRAEH---Y 498
                    P  VT +S+L AC+ +G  ++G E     LK+  +T  +      E    Y
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
             ++DM  +      ARS  + +P++  +V+ W  ++G  + +GDS      A KLF+  
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN----DALKLFVEM 505

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
                PY +  N Y+ S      A                ++ I I KQ+H++V+
Sbjct: 506 ISE--PYGVAPNAYTISCILMACAH---------------LAAIRIGKQIHAYVL 543



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 379 QIHSLIIKSD---------------FTSNPFVN-----NGLINMYSKCGDLEDSIKVFSR 418
           QIH  II S                  S PF++      G++  Y  CG  + ++ V  R
Sbjct: 55  QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLER 114

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           + P  +V WN +I    + G    A+ +   M   G  P   T   +L AC  +     G
Sbjct: 115 VTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCG 174

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK--PDVLVWQALLGA 536
             F   +   +           +V M  R G L EA    + +  +   DV+ W +++ A
Sbjct: 175 SAF-HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 233


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 188/514 (36%), Positives = 299/514 (58%), Gaps = 7/514 (1%)

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
           D    F    LE  +  +D+  +  +L  C   +L    +++H  +    +  ++ + N 
Sbjct: 32  DESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNT 91

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L+  Y KCGS    RKVF +M  R+ +TWT +ISG  Q+    + L LF +M     +PN
Sbjct: 92  LLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPN 151

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T  S + A +  +  C G Q+HG   K    S++ + SAL+D+Y++ G ++DA  +F+
Sbjct: 152 EFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD 211

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
             E  + VS   ++ G A+    E+A++LF  M++ G    P+  S    +FG  +S G 
Sbjct: 212 ALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFR--PSHFSYA-SLFGACSSTGF 268

Query: 377 ---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
              GK +H+ +IKS      F  N L++MY+K G + D+ K+F R+A R+ VSWNS++ A
Sbjct: 269 LEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTA 328

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A+HG G +A+  +EEM+  G+ P +++FLS+L ACSH GL+++G  + + M +   I  
Sbjct: 329 YAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVL 387

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
            A HY  +VD++GRAG L  A  FIE MP++P   +W+ALL AC +H ++E+G YAAE +
Sbjct: 388 EAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHV 447

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F   PD P P++++ NIY+  GRW + A+  K+MKE GV KE   SW+EIE  +H FV +
Sbjct: 448 FELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAN 507

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           D+ HPQ + I     E+L  + + GYVP+   ++
Sbjct: 508 DERHPQREEIARKWEEVLAKIKELGYVPDTSHVI 541



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 189/405 (46%), Gaps = 15/405 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL+ Y KC  +  A K+FD MP RD V+W T++SG+ ++         F + L  
Sbjct: 87  VMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRF 146

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF   ++ + + ++ A            +H     CG++  V VG+AL+  Y + G    
Sbjct: 147 GF-SPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDD 205

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + VF  +  RN ++W A+I+G  +    E+ L+LF  M      P+  +Y S   ACS 
Sbjct: 206 AQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSS 265

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L +G+ +H  + K   +      + L+DMY+K GS+ DA +IF+   + D VS   +
Sbjct: 266 TGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 325

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           L  +AQ+GF  EA+  F +M + GI   PN +S  +VL        L  G   + L+ K 
Sbjct: 326 LTAYAQHGFGNEAVCWFEEMRRGGIR--PNEISFLSVLTACSHSGLLDEGWHYYELMKKD 383

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN----GFK 442
                 +    ++++  + GDL  +++    M    + + W +++ A   H N     + 
Sbjct: 384 GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 443

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           A  ++E   L+  +P     L  ++A    G  N      K M E
Sbjct: 444 AEHVFE---LDPDDPGPHVILYNIYASG--GRWNDAARVRKKMKE 483


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 222/674 (32%), Positives = 354/674 (52%), Gaps = 67/674 (9%)

Query: 41  LDNYVDIS-RLLSISAKEGHFHLGPSLHAS----FIKTFEPFDNQNVYNVPNATV-IWNS 94
           LD+ +++S R+L    +  HF L   L A       +    F      N   + V I N+
Sbjct: 143 LDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 202

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           L++ Y +C  +  A  +FD++  R   D +SWN++VS  +++         F + + L  
Sbjct: 203 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK-MTLIV 261

Query: 152 YQL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           ++       D  S   IL AC   +    +K +H      G   +V VGNALI +Y KCG
Sbjct: 262 HEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCG 321

Query: 206 SSSSGRKVFGEMRVRNVI-----------------------------------TWTAVIS 230
              +  KVF  M  ++V+                                   TWTAVI+
Sbjct: 322 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIA 381

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL-- 288
           G  Q     E L LF +M      PN +T +S + AC+ L A  +G +IH    K  L  
Sbjct: 382 GYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLT 441

Query: 289 --------QSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGF 338
                     DL + +AL+DMYSKC S + A  IF+    EE + V+ TV++ G AQ G 
Sbjct: 442 LDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 501

Query: 339 EEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPF 394
             +A++LFV+M+     + PN   +S +L       ++ +GKQIH+ +++     +S  F
Sbjct: 502 SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYF 561

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V N LI+MYSKCGD++ +  VF  M+ ++++SW SM+  +  HG G +AL+++++M+  G
Sbjct: 562 VANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 621

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
             P D+TFL +L+ACSH G+V++G+ +  SM+  + ++PRAEHYAC +D++ R+G L +A
Sbjct: 622 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKA 681

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              ++ MP++P  +VW ALL AC +H + E+ ++A  KL     ++   Y L++NIY+ +
Sbjct: 682 WRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 741

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           GRWK+ A+    MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +L  L+  +
Sbjct: 742 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 801

Query: 635 IDEGYVPNKRFILH 648
              GYVP   F LH
Sbjct: 802 KAMGYVPETNFALH 815



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/507 (27%), Positives = 228/507 (44%), Gaps = 63/507 (12%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ YL C     A+ + + +     V WN ++   ++ G  D       R L  G  + 
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRP 160

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +   +L AC            H L+   G+E  V + NAL+  Y +CGS      +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 215 GEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSSVM 265
            E+  R   +VI+W +++S  V++      L LF KM    H    N  S  ++ ++ + 
Sbjct: 221 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 280

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC  L+A+ + +++HG   +     D+ + +AL+D Y+KCG +E+A ++F   E  D VS
Sbjct: 281 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 340

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---------------------------- 357
              ++ G++Q+G  E A +LF  M K  I +D                            
Sbjct: 341 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400

Query: 358 -----PNMVSAVLGVFGVDTSLGL---GKQIHS-------LIIKSDF---TSNPFVNNGL 399
                PN V+ ++ V     SLG    G +IH+       L + +DF     +  V N L
Sbjct: 401 FSGSLPNCVT-IISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 400 INMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GV 455
           I+MYSKC   + +  +F    +  RN V+W  MI   A++G+   AL+L+ EM  E  GV
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEA 514
            P   T   +L AC+H+  +  G +    +   HR    A   A C++DM  + G +  A
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG 541
           R   + M  K   + W +++    +HG
Sbjct: 580 RHVFDSMSQK-SAISWTSMMTGYGMHG 605



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 210/475 (44%), Gaps = 75/475 (15%)

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           ++G  ++ SY  CG++     V   +     + W  +I   ++    +  + +  +M   
Sbjct: 97  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
              P+  T    + AC  L +   G   HG++     +S++ I +AL+ MYS+CGS+E+A
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 312 WQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
             IF+   +    D +S   I+    ++     A+ LF KM     E   N  S ++ + 
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 369 GVDTSLG------LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            +  + G        K++H   I++    + FV N LI+ Y+KCG +E+++KVF+ M  +
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-------------------------- 456
           + VSWN+M+A +++ GN   A EL++ M+ E +                           
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 457 ---------PTDVTFLSLLHACSHVGLVNKGMEF----LKS--MTEVHRISPRAEH---Y 498
                    P  VT +S+L AC+ +G  ++G E     LK+  +T  +      E    Y
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
             ++DM  +      ARS  + +P++  +V+ W  ++G  + +GDS      A KLF+  
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN----DALKLFVEM 512

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
                PY +  N Y+ S      A                ++ I I KQ+H++V+
Sbjct: 513 ISE--PYGVAPNAYTISCILMACAH---------------LAAIRIGKQIHAYVL 550



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 23/180 (12%)

Query: 379 QIHSLIIKSD---------------FTSNPFVN-----NGLINMYSKCGDLEDSIKVFSR 418
           QIH  II S                  S PF++      G++  Y  CG  + ++ V  R
Sbjct: 62  QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACGATDYALLVLER 121

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           + P  +V WN +I    + G    A+ +   M   G  P   T   +L AC  +     G
Sbjct: 122 VTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCG 181

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK--PDVLVWQALLGA 536
             F   +   +           +V M  R G L EA    + +  +   DV+ W +++ A
Sbjct: 182 SAF-HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 240


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 326/581 (56%), Gaps = 20/581 (3%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           AT +WNSL++FY KC  +++A +LF+ +  +D VSWN M++   + GE +   G F+R L
Sbjct: 258 ATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRML 317

Query: 148 EL-GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           ++    Q ++ +F  +LSA          + IH  ++    E + ++ N+LIT Y KC  
Sbjct: 318 KVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCRE 377

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS----LTYLS 262
               R++F  + +R++I+W ++++G  QN+       +F +M L  I P+S    + + +
Sbjct: 378 VGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNA 437

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQS--DLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +    SGL     G++IHG + +        L + +A++ MY+K   + DA +IF+  + 
Sbjct: 438 ASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKN 497

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D  S   ++ G+++N   E+ + +F+ ++K G  +D   +S +L   G   SL LGKQ 
Sbjct: 498 RDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQF 557

Query: 381 HSLIIK-------SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           H+++ K           S   +NN LI+MYSKCG ++D+ +VF +M  ++  SW +MI  
Sbjct: 558 HAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITG 617

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
            A HG   +AL+L+E MK +G++P  VTFL+LL AC+H GLV +G  +  SM   + +SP
Sbjct: 618 CAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSP 677

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIE-----RMPVKPDVL-VWQALLGACSIHGDSEMGK 547
             EHYAC++D+ GR+G    A+S +E       P   D+L +W+ LLGAC      ++G 
Sbjct: 678 SIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGV 737

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
            AA K+   +P+  A YIL+AN+Y+ SG W++  K  K M++ G+ KE G SWI+   + 
Sbjct: 738 EAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRR 797

Query: 608 HSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           H FV  D  HPQ   I+  LA+L       GYVP    +LH
Sbjct: 798 HVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLH 838



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 225/445 (50%), Gaps = 19/445 (4%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           ++++ A +LFD+ P RD +SW+ +++ + R G F   FG F++ +  G      +  +++
Sbjct: 69  ERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLL 128

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE--MRVR 220
             +C   E+ L  + +H      G+  +  +  A IT Y +CG     ++VF E  +   
Sbjct: 129 KVSCSTGEIGLC-RQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLAL 187

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +++ W ++I+  + +  + E L+LF KM  +G++ P  LTY S V AC        G  +
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG + K  L++   + ++L+  Y KCG+++ A Q+FE     D VS   ++    Q G  
Sbjct: 248 HGRIIKAGLEAT-NLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEG 306

Query: 340 EEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
           E A+ LF +M+K    + PN V+  ++L      ++L  G++IH+ I +     +  + N
Sbjct: 307 ENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITN 366

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI  YSKC ++  + ++F R+  R+ +SWNSM+A + ++    +  ++++ M L G+EP
Sbjct: 367 SLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEP 426

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-----RISPRAEHYA---CVVDMVGRAG 509
              +   + +A S     + G+ + +   E+H     RI+P     +    ++ M  +  
Sbjct: 427 DSHSLTIIFNAASR---DSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFN 483

Query: 510 LLIEARSFIERMPVKPDVLVWQALL 534
            + +A    + M  + D   W A++
Sbjct: 484 RIADAEKIFKGMKNR-DSYSWNAMM 507



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q HG   +   +   C  S  +   S+   ++ A Q+F+     D +S + ++  +++ G
Sbjct: 43  QNHGFSSQFIFRCSAC--SKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCG 100

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              +A  LF KM+  G++ +   ++++L V      +GL +Q+H   I++ F  +  +  
Sbjct: 101 NFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRA 160

Query: 398 GLINMYSKCGDLEDSIKVF--SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG- 454
             I MYS+CG LED+ +VF  + +   + + WNS+IAA+  HG   + L L+ +M   G 
Sbjct: 161 AWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGV 220

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGM----EFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           V PT++T+ S+++AC   G    G       +K+  E   +      +  +V   G+ G 
Sbjct: 221 VAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNL------WNSLVTFYGKCGN 274

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
           L  A    ER+  K DV+ W A++ A    G+ E       ++   +P
Sbjct: 275 LQHASQLFERISRK-DVVSWNAMIAANEQRGEGENALGLFRRMLKVEP 321



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           ++V +S LL+   +     LG   HA   K F   + Q+  +  +   I N+L+S Y KC
Sbjct: 534 DHVSLSILLTSCGRLVSLQLGKQFHAVVAKLF---NGQDCPHQDSLLSINNALISMYSKC 590

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +++A ++F  M  +D  SW  M++G   +G        F+R    G  + +Q +F  +
Sbjct: 591 GSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGI-KPNQVTFLAL 649

Query: 163 LSAC 166
           L AC
Sbjct: 650 LMAC 653


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 211/607 (34%), Positives = 326/607 (53%), Gaps = 18/607 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LL  SA+      G  LHA+ +K     D          T++ N+L+  Y KC ++ 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSD----------TMLNNNLIDMYAKCGKLH 56

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD MP R+ VSW  ++ GFL +GE       F      G    ++ + +  L AC
Sbjct: 57  MAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSG-TSPNEFTLSATLKAC 115

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                + V   IH +    G+E    V N+L+  Y K   +   R+VF  +  RN+ TW 
Sbjct: 116 GGGTRAGVQ--IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQALCEGRQIHGIL-- 283
           ++ISG        + L +F +M       P+  T+ S + ACSGL A  EG Q+H  +  
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
             ++  S+  +  AL+D+Y KC  +  A Q+F+  E  + +  T ++VG AQ G  +EAM
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF +   +G+  D +++S+V+ VF     +  GKQ+H    K+    +  V N L++MY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG   ++ + F  M  RN VSW +MI    +HG+G +A++L+EEM+ EGVE  +V +L
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 413

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           +LL ACSH GLV++   +   + +  R+ P+AEHYAC+VD++GRAG L EA+  I  MP+
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 473

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +P V VWQ LL AC +H D  +G+   + L     D+P  Y++++NI + +G W+E    
Sbjct: 474 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 533

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADTIHGVLAELLRLMIDE-GYVP 641
              M+  G+ K+ G SW E++K+VH F    D  HPQA  I   L E+   M +  GY  
Sbjct: 534 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSG 593

Query: 642 NKRFILH 648
           + R  LH
Sbjct: 594 DARCALH 600



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 12/221 (5%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +SL  G Q+H+ ++K  F S+  +NN LI+MY+KCG L  + +VF  
Sbjct: 5   RMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDG 64

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSW +++  F  HG   + L L+ EM+  G  P + T  + L AC   G    G
Sbjct: 65  MPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAG 122

Query: 479 MEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++     +++  E H +   +     +V M  +     +AR   + +P + ++  W +++
Sbjct: 123 VQIHGVCVRTGFEGHDVVANS-----LVVMYSKGRWTGDARRVFDVIPSR-NLATWNSMI 176

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
              +  G          ++     + P  +   + + +CSG
Sbjct: 177 SGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSG 217


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/604 (31%), Positives = 330/604 (54%), Gaps = 35/604 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V IS LL+  A  G    G  LH+   K            + +  ++  SLL  Y+KC  
Sbjct: 245 VTISSLLAACASLGDLQKGTQLHSYLFKA----------GMSSDYIMEGSLLDLYVKCGD 294

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A+ +F+     + V WN ++  F +  +    F  F +    G  + +Q ++  IL 
Sbjct: 295 VETALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGI-RPNQFTYPCILR 353

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +    + + IH L    G+E ++ V   LI  Y K G     R+V   ++ ++V++
Sbjct: 354 TCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++I+G VQ++  ++ L  F +M    I P+++   S++  C+G++A+ +G QIH  ++
Sbjct: 414 WTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVY 473

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
                 D+ I +AL+++Y++CG + +A+  FE  E  D ++   ++ GFAQ+G  EEA++
Sbjct: 474 VSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALK 533

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F++M ++G++ +     + L        +  GKQIH+ +IK+  +    V N LI++Y 
Sbjct: 534 VFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYG 593

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG  ED+   FS M+ RN VSWN++I + ++HG G +AL+ +++MK E           
Sbjct: 594 KCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMKKE----------- 642

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
                        G+ + KSM++ + I PR +HYACV+D+ GRAG L  A+ F+E MP+ 
Sbjct: 643 -------------GLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIA 689

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D +VW+ LL AC +H + E+G+ AA+ L   +P   A Y+L++N Y+ +G+W  R +  
Sbjct: 690 ADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVR 749

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K M++ GV KE G SWIE++  VH+F V D++HP A+ I+  LA +   +   GY   K 
Sbjct: 750 KMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQEKY 809

Query: 645 FILH 648
            + H
Sbjct: 810 HLFH 813



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/445 (31%), Positives = 234/445 (52%), Gaps = 3/445 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N L+  Y K   +  A ++F+++  RD VSW  M+SG+ +NG  +     +++    
Sbjct: 78  IVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRA 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G         + +LS+C ++EL    + +H   Y  G+  E  VGNALIT Y +CGS   
Sbjct: 138 GVVPTPYV-LSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRL 196

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  R+ +T+  +ISG  Q    E  L++F +M    ++P+ +T  S + AC+ 
Sbjct: 197 AERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACAS 256

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L +G Q+H  L+K  + SD  +E +L+D+Y KCG VE A  IF      + V   +I
Sbjct: 257 LGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLI 316

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV F Q     ++ +LF +M  AGI  +      +L        + LG+QIHSL +K+ F
Sbjct: 317 LVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGF 376

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI+MYSK G LE + +V   +  ++ VSW SMIA + +H     AL  ++E
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKE 436

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G+ P ++   S +  C+ +  + +G++ + +   V   S     +  +V++  R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGIKAMRQGLQ-IHARVYVSGYSGDVSIWNALVNLYARCG 495

Query: 510 LLIEARSFIERMPVKPDVLVWQALL 534
            + EA S  E +  K D + W  L+
Sbjct: 496 RIREAFSSFEEIEHK-DEITWNGLV 519



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 246/498 (49%), Gaps = 19/498 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS   K   F  G S+HA   K              + T + N+L++ YL+C   R
Sbjct: 146 LSSVLSSCTKAELFAQGRSVHAQGYKQ----------GFCSETFVGNALITLYLRCGSFR 195

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F DMP RDTV++NT++SG  +    +     F+     G    D  + + +L+AC
Sbjct: 196 LAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGL-SPDCVTISSLLAAC 254

Query: 167 DRSELSLVSK--MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
             + L  + K   +H  ++  G   +  +  +L+  Y KCG   +   +F      NV+ 
Sbjct: 255 --ASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVL 312

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  ++    Q     +  +LF +M    I PN  TY   +  C+    +  G QIH +  
Sbjct: 313 WNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSV 372

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K   +SD+ +   L+DMYSK G +E A ++ E  +E D VS T ++ G+ Q+ + ++A+ 
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALA 432

Query: 345 LFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            F +M K GI  D   + SA+ G  G+  ++  G QIH+ +  S ++ +  + N L+N+Y
Sbjct: 433 AFKEMQKCGIWPDNIGLASAISGCAGI-KAMRQGLQIHARVYVSGYSGDVSIWNALVNLY 491

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           ++CG + ++   F  +  ++ ++WN +++ FA+ G   +AL+++  M   GV+    TF+
Sbjct: 492 ARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S L A +++  + +G +    + +    S   E    ++ + G+ G   +A+     M  
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGH-SFETEVGNALISLYGKCGSFEDAKMEFSEMSE 610

Query: 524 KPDVLVWQALLGACSIHG 541
           + +V  W  ++ +CS HG
Sbjct: 611 RNEV-SWNTIITSCSQHG 627



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 207/435 (47%), Gaps = 20/435 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELGFYQLDQASFTIILSAC-DRSEL 171
           M  R   S    ++GFL   +       F  K     G   LD   F   L AC      
Sbjct: 1   MTRRGAASLGWSLAGFLAQEDPAKVLSLFADKARQHGGLGPLD---FACALRACRGNGRR 57

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V   IH      G  ++  VGN LI  Y K G     R+VF E+  R+ ++W A++SG
Sbjct: 58  WQVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSG 117

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             QN L EE L L+ +MH   + P      S + +C+  +   +GR +H   +K    S+
Sbjct: 118 YAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSE 177

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
             + +AL+ +Y +CGS   A ++F      D V+   ++ G AQ    E A+++F +M  
Sbjct: 178 TFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQS 237

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G+  D   +S++L        L  G Q+HS + K+  +S+  +   L+++Y KCGD+E 
Sbjct: 238 SGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVET 297

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           ++ +F+     N V WN ++ AF +  +  K+ EL+ +M+  G+ P   T+  +L  C+ 
Sbjct: 298 ALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTC 357

Query: 472 VGLVNKGMEFLKSMTEVHRISPR----AEHY--ACVVDMVGRAGLLIEARSFIERMPVKP 525
            G ++ G        ++H +S +    ++ Y    ++DM  + G L +AR  +E +  K 
Sbjct: 358 TGEIDLG-------EQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK- 409

Query: 526 DVLVWQALLGACSIH 540
           DV+ W +++     H
Sbjct: 410 DVVSWTSMIAGYVQH 424


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 306/550 (55%), Gaps = 2/550 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N ++ FYLKC +++   KLF+ +  +D VSW TM++G ++N         F   +  G +
Sbjct: 294 NGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKG-W 352

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D    T +L++C   +     + +H        + +  V N LI  Y KC S ++ RK
Sbjct: 353 KPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARK 412

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +   NV+++ A+I G  +     E L LF +M L L  P  LT++S +   S L  
Sbjct: 413 VFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFL 472

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L    QIH ++ K  +  D    SAL+D+YSKC  V DA  +FE   + D V    +  G
Sbjct: 473 LELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSG 532

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           ++Q    EE+++L+  +  + ++ +    +AV+       SL  G+Q H+ +IK     +
Sbjct: 533 YSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDD 592

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
           PFV N L++MY+KCG +E+S K FS    R+   WNSMI+ +A+HG+  KALE++E M +
Sbjct: 593 PFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIM 652

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EGV+P  VTF+ LL ACSH GL++ G    +SM++   I P  +HYAC+V ++GRAG + 
Sbjct: 653 EGVKPNYVTFVGLLSACSHAGLLDLGFHHFESMSKF-GIEPGIDHYACMVSLLGRAGKIY 711

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA+ F+++MP+KP  +VW++LL AC + G  E+G YAAE      P     YIL++NI++
Sbjct: 712 EAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFA 771

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             G W       ++M    V KE G SWIE+  +VH F+  D  H  +  I  VL  L+ 
Sbjct: 772 SKGMWASVRMVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLISLVLDNLIL 831

Query: 633 LMIDEGYVPN 642
            +   GYVPN
Sbjct: 832 QIKGFGYVPN 841



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 129/373 (34%), Positives = 209/373 (56%), Gaps = 4/373 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y K +   +A KLFD MP R+ V+W++MVS + ++G        F R +     
Sbjct: 91  NTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSE 150

Query: 153 QLDQASFTIILSACDRSELSLVSK--MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           + ++     ++ AC  ++L  +S+   +H  V   G+ ++V VG +LI  Y K G     
Sbjct: 151 KPNEYILASVVRAC--TQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEA 208

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F  ++V+  +TWTA+I+G  +    E  LKLF +M  G + P+     S + ACS L
Sbjct: 209 RLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSML 268

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L  G+QIHG + +     D+ + + ++D Y KC  V+   ++F    + D VS T ++
Sbjct: 269 EFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMI 328

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G  QN F  +AM LFV+MV+ G + D    ++VL   G   +L  G+Q+H+  IK +  
Sbjct: 329 AGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNID 388

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++ FV NGLI+MY+KC  L ++ KVF  +A  N VS+N+MI  ++R     +AL+L+ EM
Sbjct: 389 NDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREM 448

Query: 451 KLEGVEPTDVTFL 463
           +L    PT +TF+
Sbjct: 449 RLSLSPPTLLTFV 461



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 151/545 (27%), Positives = 276/545 (50%), Gaps = 48/545 (8%)

Query: 80  QNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
           Q+VY       +  SL+ FY K   +  A  +FD + ++ TV+W  +++G+ + G  ++ 
Sbjct: 187 QDVY-------VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVS 239

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
              F +  E   Y  D+   + +LSAC   E     K IH  V   G++ +V+V N +I 
Sbjct: 240 LKLFNQMREGDVYP-DRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIID 298

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y KC    +GRK+F  +  ++V++WT +I+G +QN  + + + LFV+M      P++  
Sbjct: 299 FYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFG 358

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S + +C  LQAL +GRQ+H    K+ + +D  +++ L+DMY+KC S+ +A ++F+   
Sbjct: 359 CTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVA 418

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLG 377
            ++ VS   ++ G+++     EA+ LF +M +  +   P +++ V  LG+      L L 
Sbjct: 419 AINVVSYNAMIEGYSRQDKLVEALDLFREM-RLSLS-PPTLLTFVSLLGLSSSLFLLELS 476

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
            QIH LIIK   + + F  + LI++YSKC  + D+  VF  +  R+ V WN+M + +++ 
Sbjct: 477 SQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQ 536

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF---------------- 481
               ++L+LY+++++  ++P + TF +++ A S++  +  G +F                
Sbjct: 537 LENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVT 596

Query: 482 ---------LKSMTEVHRI--SPRAEHYACVVDMV---GRAGLLIEARSFIERM---PVK 524
                      S+ E H+   S      AC   M+    + G   +A    ERM    VK
Sbjct: 597 NSLVDMYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVK 656

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKL--FLAQPDSPAPYILMANIYSCSGRWKERAK 582
           P+ + +  LL ACS  G  ++G +  E +  F  +P     Y  M ++   +G+  E  +
Sbjct: 657 PNYVTFVGLLSACSHAGLLDLGFHHFESMSKFGIEP-GIDHYACMVSLLGRAGKIYEAKE 715

Query: 583 AIKRM 587
            +K+M
Sbjct: 716 FVKKM 720



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 189/417 (45%), Gaps = 47/417 (11%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IK           N+ N   + N L+  Y KCD + NA K+FD +   + VS
Sbjct: 375 GRQVHAYAIKV----------NIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVS 424

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +N M+ G+ R  +       F R + L        +F  +L       L  +S  IHCL+
Sbjct: 425 YNAMIEGYSRQDKLVEALDLF-REMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLI 483

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   +   G+ALI  Y KC      R VF E+  R+++ W A+ SG  Q    EE L
Sbjct: 484 IKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESL 543

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KL+  + +  + PN  T+ + + A S + +L  G+Q H  + K+ L  D  + ++L+DMY
Sbjct: 544 KLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMY 603

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KCGS+E++ + F    + D      ++  +AQ+G   +A+++F +M+  G++  PN V+
Sbjct: 604 AKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVK--PNYVT 661

Query: 363 AVLGVFGVDTSLG-LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            V G+    +  G L    H     S F   P +++                        
Sbjct: 662 FV-GLLSACSHAGLLDLGFHHFESMSKFGIEPGIDH------------------------ 696

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
                +  M++   R G  ++A E  ++M    ++P  V + SLL AC   G V  G
Sbjct: 697 -----YACMVSLLGRAGKIYEAKEFVKKMP---IKPAAVVWRSLLSACRVSGHVELG 745



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 167/307 (54%), Gaps = 2/307 (0%)

Query: 176 KMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           K IH  + + G+ + +V + N L+ +Y K    S  +K+F  M  RN++TW++++S   Q
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 235 NQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           +    E L LF + M      PN     S V AC+ L  L +  Q+HG + K     D+ 
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+D Y+K G V++A  IF+  +    V+ T I+ G+A+ G  E +++LF +M +  
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           +  D  ++S+VL    +   L  GKQIH  +++  F  +  V NG+I+ Y KC  ++   
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGR 310

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           K+F+R+  ++ VSW +MIA   ++     A++L+ EM  +G +P      S+L++C  + 
Sbjct: 311 KLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQ 370

Query: 474 LVNKGME 480
            + KG +
Sbjct: 371 ALQKGRQ 377



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 129/293 (44%), Gaps = 36/293 (12%)

Query: 378 KQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           K+IH+ I+   F  +  F+ N L++ YSK     D+ K+F  M  RN V+W+SM++ + +
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 437 HGNGFKALELY-EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           HG   +AL L+   M+    +P +    S++ AC+ +G +++ ++ L             
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQ-LHGFVVKGGFVQDV 189

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                ++D   + G + EAR   + + VK  V  W A++   +  G SE+    + KLF 
Sbjct: 190 YVGTSLIDFYAKRGYVDEARLIFDGLKVKTTV-TWTAIIAGYAKLGRSEV----SLKLFN 244

Query: 556 AQPDS---PAPYILMANIYSCS------GRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
              +    P  Y++ + + +CS      G  +     ++R  +M V    GI  I+   +
Sbjct: 245 QMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGI--IDFYLK 302

Query: 607 VHSFVVDDKMHPQ-----------------ADTIHGVLAELLRLMIDEGYVPN 642
            H      K+  +                  ++ HG   +L   M+ +G+ P+
Sbjct: 303 CHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPD 355


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 208/615 (33%), Positives = 327/615 (53%), Gaps = 23/615 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LL  SAK      G  LH +  K              + T++ N+L+  Y KC ++ 
Sbjct: 220 IADLLRASAKGSSLRGGVQLHGALTK----------LGFGSDTMLGNNLIDMYAKCGELD 269

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F  M  R+ VSW  ++ GFL++G+                   ++ + +  L AC
Sbjct: 270 MAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKAC 329

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-RNVITW 225
             +E       IH L    GYEE   V ++L+  Y K G     R+VF    + R + TW
Sbjct: 330 CVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATW 389

Query: 226 TAVISGLVQNQLYEEGLKLFVKM------HLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            A+ISG        + L +F +M      H     P+  T+ S + AC GL A  EG Q+
Sbjct: 390 NAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQV 449

Query: 280 HGILWK--LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           H  +     +  S+  +  AL+DMY KCG +  A Q+FE  E  + +  T ++VG AQ G
Sbjct: 450 HAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEG 509

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA++LF +  ++G   D +++S+++GV      +  G+Q+H   +KS   ++    N
Sbjct: 510 QVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGN 569

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            +++MY KCG  +++ ++F  +  RN VSW +MI    +HG G +A+ ++EEM+  GVEP
Sbjct: 570 SIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEP 629

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            +VT+L+LL ACSH GLV++   +   +     + P+AEHYAC+VD++GRAG L EAR  
Sbjct: 630 DEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDL 689

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           I  MP++P V VWQ LL AC +H D  +G+ A + L     D+P  Y+ ++N+++ +G W
Sbjct: 690 IRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAW 749

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV--VDDKMHPQADTIHGVLAEL-LRLM 634
           +E  K    M+  G+ K+ G SW+EI K+VH F    D++ HPQA  I  VL ++  R+ 
Sbjct: 750 RECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIRRVLRDVETRVR 809

Query: 635 IDEGYVPNK-RFILH 648
              GY  +  +F LH
Sbjct: 810 EQLGYCADDVQFALH 824



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 14/183 (7%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +SL  G Q+H  + K  F S+  + N LI+MY+KCG+L+ + +VF  
Sbjct: 218 KMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGG 277

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNK 477
           M  RN VSW +++  F +HG+    L L  EM+      P + T  + L AC        
Sbjct: 278 MRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVT----- 332

Query: 478 GMEFLKSMTEVHRISPRA---EHYACVVDMV---GRAGLLIEARSFIERMPVKPDVLVWQ 531
             E + +   +H +  R    EHY     +V    + G + +AR   +   +   +  W 
Sbjct: 333 --EDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWN 390

Query: 532 ALL 534
           A++
Sbjct: 391 AMI 393


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 210/607 (34%), Positives = 326/607 (53%), Gaps = 18/607 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LL  SA+      G  LHA+ +K              + T++ N+L+  Y KC ++ 
Sbjct: 203 IADLLRASARGSSLRGGVQLHAALMK----------LGFGSDTMLNNNLIDMYAKCGKLH 252

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD MP R+ VSW  ++ GFL +GE       F      G    ++ + +  L AC
Sbjct: 253 MAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSG-TSPNEFTLSATLKAC 311

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                + V   IH +    G+E    V N+L+  Y K   +   R+VF  +  RN+ TW 
Sbjct: 312 GGGTRAGVQ--IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 369

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQALCEGRQIHGIL-- 283
           ++ISG        + L +F +M       P+  T+ S + ACSGL A  EG Q+H  +  
Sbjct: 370 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 429

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
             ++  S+  +  AL+D+Y KC  +  A Q+F+  E  + +  T ++VG AQ G  +EAM
Sbjct: 430 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 489

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF +   +G+  D +++S+V+ VF     +  GKQ+H    K+    +  V N L++MY
Sbjct: 490 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 549

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG   ++ + F  M  RN VSW +MI    +HG+G +A++L+EEM+ EGVE  +V +L
Sbjct: 550 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 609

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           +LL ACSH GLV++   +   + +  R+ P+AEHYAC+VD++GRAG L EA+  I  MP+
Sbjct: 610 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 669

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +P V VWQ LL AC +H D  +G+   + L     D+P  Y++++NI + +G W+E    
Sbjct: 670 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 729

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADTIHGVLAELLRLMIDE-GYVP 641
              M+  G+ K+ G SW E++K+VH F    D  HPQA  I   L E+   M +  GY  
Sbjct: 730 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSG 789

Query: 642 NKRFILH 648
           + R  LH
Sbjct: 790 DARCALH 796



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 106/229 (46%), Gaps = 12/229 (5%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +SL  G Q+H+ ++K  F S+  +NN LI+MY+KCG L  + +VF  
Sbjct: 201 RMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDG 260

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSW +++  F  HG   + L L+ EM+  G  P + T  + L AC   G    G
Sbjct: 261 MPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAG 318

Query: 479 MEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++     +++  E H +   +     +V M  +     +AR   + +P + ++  W +++
Sbjct: 319 VQIHGVCVRTGFEGHDVVANS-----LVVMYSKGRWTGDARRVFDVIPSR-NLATWNSMI 372

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
              +  G          ++     + P  +   + + +CSG    R  A
Sbjct: 373 SGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGA 421


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 198/550 (36%), Positives = 319/550 (58%), Gaps = 14/550 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC ++ +A ++FD MP+R+TVSWN +++G+  + +       F   LE+   
Sbjct: 134 SALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELF---LEMQRV 190

Query: 153 QL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           +L  D A+F  +L+  +      + + +H  +   G    + V NA IT+Y +CG+ +  
Sbjct: 191 ELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADS 250

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSG 269
           R++F  ++ R++I+W +++     + + +E ++ FV+M     + P+  ++ S V  CS 
Sbjct: 251 RRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCS- 309

Query: 270 LQALC---EGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDG 323
            +  C   +GR IH ++ K+ L+    + +A++ MY++      +EDA++ F+     D 
Sbjct: 310 -EHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDA 368

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   +L G++ +G   +A++ F  M    +  D   +SA L        L LG+Q+HSL
Sbjct: 369 VSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSL 428

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +I+S F+SN FV++ LI MYSKCG + D+ K F      +SV WNSM+  +A+HG     
Sbjct: 429 VIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTV 488

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
            +L+ EM    V    VTF++LL A SH GLV++G E L SM   ++I  R EHYAC VD
Sbjct: 489 TDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVD 548

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           + GRAG L +A+  IE MP +PD +VW  LLGAC IHG+ E+    A  LF+A+P   + 
Sbjct: 549 LYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHST 608

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L++++YS  G W +RA   K MK  G+ K  G SWIE++ +VHSF  DD+ HP+ D I
Sbjct: 609 YVLLSSMYSGRGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDRSHPRMDEI 668

Query: 624 HGVLAELLRL 633
             +L  LL++
Sbjct: 669 FDMLRMLLQV 678



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 128/514 (24%), Positives = 244/514 (47%), Gaps = 28/514 (5%)

Query: 92  WNSLLSFYLKC---DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           WN LL+ Y        +  A ++FD++P  D VSWN++++  +  G     +   K    
Sbjct: 29  WNQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHA 88

Query: 149 LGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            G   L  ++F +   L +   +    +   +       G  + V   +AL+  Y KCG 
Sbjct: 89  RG---LTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGR 145

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S  R+VF  M VRN ++W A+I+G  +++   + ++LF++M    + P+  T+ + +  
Sbjct: 146 LSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLAT 205

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
             G       +Q+HG + K      L + +A +  YS+CG+  D+ +IF+  +  D +S 
Sbjct: 206 VEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISW 265

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGV---FGVDTSLGLGKQIHS 382
             +L  +A +G ++EAM+ FV+M++ +G++ D    ++V+ V    G D     G+ IHS
Sbjct: 266 NSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDR--QGRSIHS 323

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           L++K        V N +I MY++  +   +ED+ K F  +  +++VSWNSM+  ++ HG 
Sbjct: 324 LVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGL 383

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
              AL  +  M+ E V   +    + L +CS + ++  G + + S+      S      +
Sbjct: 384 SSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQ-VHSLVIQSGFSSNDFVSS 442

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            ++ M  + G++ +AR   E    K   + W +++   + HG ++        LF    D
Sbjct: 443 SLIFMYSKCGMVGDARKSFEEAD-KGSSVPWNSMMFGYAQHGQAQ----TVTDLFSEMLD 497

Query: 560 SPAP-----YILMANIYSCSGRWKERAKAIKRMK 588
              P     ++ +   YS  G   E ++ +  M+
Sbjct: 498 HKVPLDHVTFVALLTAYSHGGLVDEGSEILNSME 531



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 174/361 (48%), Gaps = 16/361 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+ ++ Y +C    ++ ++FD +  RD +SWN+M+  +  +G  D    FF R +  
Sbjct: 232 VVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRE 291

Query: 150 GFYQLDQASFTIILSAC------DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
              Q D  SFT ++S C      DR       + IH LV   G E    V NA+I  Y +
Sbjct: 292 SGVQPDMYSFTSVVSVCSEHGCDDRQ-----GRSIHSLVVKIGLEGVTHVCNAMIAMYTR 346

Query: 204 CGSS---SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
              +       K F  +  ++ ++W ++++G   + L  + L+ F  M    ++ +    
Sbjct: 347 FTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFAL 406

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            +++ +CS L  L  GRQ+H ++ +    S+  + S+L+ MYSKCG V DA + FE A++
Sbjct: 407 SAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADK 466

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
              V    ++ G+AQ+G  +    LF +M+   + +D     A+L  +     +  G +I
Sbjct: 467 GSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEI 526

Query: 381 -HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHG 438
            +S+  +             +++Y + G L+ + ++   M  + +++ W +++ A   HG
Sbjct: 527 LNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHG 586

Query: 439 N 439
           N
Sbjct: 587 N 587



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 190/393 (48%), Gaps = 15/393 (3%)

Query: 192 TVGNALITSYFKCGSSS---SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           T  N L+T+Y   G  S   + R+VF E+   + ++W ++++  V    + +  +L   M
Sbjct: 27  TPWNQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDM 86

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
           H   +  ++    S++ + +  +    G Q+     K  L  ++   SAL+D+Y+KCG +
Sbjct: 87  HARGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRL 146

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
            DA ++F+     + VS   ++ G+A++    +AM+LF++M +  +  D    +A+L   
Sbjct: 147 SDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATV 206

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
              +   L +Q+H  I K        V N  I  YS+CG   DS ++F  +  R+ +SWN
Sbjct: 207 EGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWN 266

Query: 429 SMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           SM+ A+A HG   +A+  +  M  E GV+P   +F S++  CS  G  ++    + S+  
Sbjct: 267 SMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSL-- 324

Query: 488 VHRISPRAEHYAC--VVDMVGRAG---LLIEARSFIERMPVKPDVLVWQALLGACSIHG- 541
           V +I      + C  ++ M  R     ++ +A    + +  K D + W ++L   S HG 
Sbjct: 325 VVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFK-DAVSWNSMLTGYSHHGL 383

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
            S+  ++   +   A+  S   + L A + SCS
Sbjct: 384 SSDALRFF--RFMRAENVSTDEFALSAALRSCS 414


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/607 (34%), Positives = 326/607 (53%), Gaps = 18/607 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LL  SA+      G  LHA+ +K              + T++ N+L+  Y KC ++ 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMK----------LGFGSDTMLNNNLIDMYAKCGKLH 56

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD MP R+ VSW  ++ GFL +GE       F      G    ++ + +  L AC
Sbjct: 57  MAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSG-TSPNEFTLSATLKAC 115

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                + V   IH +    G+E    V N+L+  Y K   +   R+VF  +  RN+ TW 
Sbjct: 116 GGGTRAGVQ--IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQALCEGRQIHGIL-- 283
           ++ISG        + L +F +M       P+  T+ S + ACSGL A  EG Q+H  +  
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
             ++  S+  +  AL+D+Y KC  +  A Q+F+  E  + +  T ++VG AQ G  +EAM
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF +   +G+  D +++S+V+ VF     +  GKQ+H    K+    +  V N L++MY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG   ++ + F  M  RN VSW +MI    +HG+G +A++L+EEM+ EGVE  +V +L
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYL 413

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           +LL ACSH GLV++   +   + +  R+ P+AEHYAC+VD++GRAG L EA+  I  MP+
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPM 473

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +P V VWQ LL AC +H D  +G+   + L     D+P  Y++++NI + +G W+E    
Sbjct: 474 EPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGI 533

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADTIHGVLAELLRLMIDE-GYVP 641
              M+  G+ K+ G SW E++K+VH F    D  HPQA  I   L E+   M +  GY  
Sbjct: 534 RGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMRERLGYSG 593

Query: 642 NKRFILH 648
           + R  LH
Sbjct: 594 DARCALH 600



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 104/221 (47%), Gaps = 12/221 (5%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +SL  G Q+H+ ++K  F S+  +NN LI+MY+KCG L  + +VF  
Sbjct: 5   RMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDG 64

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSW +++  F  HG   + L L+ EM+  G  P + T  + L AC   G    G
Sbjct: 65  MPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAG 122

Query: 479 MEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++     +++  E H +   +     +V M  +     +AR   + +P + ++  W +++
Sbjct: 123 VQIHGVCVRTGFEGHDVVANS-----LVVMYSKGRWTGDARRVFDVIPSR-NLATWNSMI 176

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
              +  G          ++     + P  +   + + +CSG
Sbjct: 177 SGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSG 217


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 203/580 (35%), Positives = 311/580 (53%), Gaps = 40/580 (6%)

Query: 86   PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
            PN T  +N+LLS + +  +  +A  LF  +P  D  S+N +++   ++         F  
Sbjct: 824  PN-TFSYNALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADAL-LFLA 881

Query: 146  SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            ++    + L+  SF   LSAC   + S     +H LV    + ++V +G+AL+  Y KC 
Sbjct: 882  AMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE 941

Query: 206  SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 R+VF  M  RN+++W ++I+   QN    E L LFV M      P+ +T  S + 
Sbjct: 942  WPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMS 1001

Query: 266  ACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCG------------------ 306
            AC+GL A  EGRQ+H  + K    + D+ + +AL+DMY+KCG                  
Sbjct: 1002 ACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVV 1061

Query: 307  -------------SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
                         +VEDA  +F    E + ++  V++  +AQNG EEEA++LFV++ +  
Sbjct: 1062 SETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRES 1121

Query: 354  IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT------SNPFVNNGLINMYSKCG 407
            +         VL   G    L LG+Q H  ++K  F       S+ FV N L++MY K G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181

Query: 408  DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
             ++D  KVF RMA R++VSWN+MI   A++G    AL L+E M      P  VT + +L 
Sbjct: 1182 SIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLS 1241

Query: 468  ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
            AC H GLV +G  + +SMTE H I P  +HY C++D++GRAG L E    I+ M ++PD 
Sbjct: 1242 ACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDA 1301

Query: 528  LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            ++W +LLG+C +H + EMG++AA KLF   P +  PY+L++N+Y+  G+W +  +    M
Sbjct: 1302 VLWASLLGSCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSM 1361

Query: 588  KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            K  GV K+ G SWIEI ++V  F+  D  HP  + IH +L
Sbjct: 1362 KHRGVSKQPGCSWIEIGRKVSVFLARDNGHPCKNEIHAIL 1401



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 146/521 (28%), Positives = 252/521 (48%), Gaps = 40/521 (7%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++  +L+  Y  C  + +A + FDD+   + +SWN +V  +   G  DM    F R L  
Sbjct: 187 ILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSA 246

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS--- 206
           G   L       +L+  D + L    + IH  V   GYE  V V ++++  Y KCG+   
Sbjct: 247 GVRPLGYTVSHAVLACRDNNALE-EGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDA 305

Query: 207 -----------------------SSSGR-----KVFGEMRVRNVITWTAVISGLVQNQLY 238
                                  +S GR     +VF  M+ RN+++W A+++G +++   
Sbjct: 306 AQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDL 365

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
              L LF +M       +++T  S + AC+G+  + +G ++H    K    S   +++AL
Sbjct: 366 TGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNAL 425

Query: 299 MDMYSKCGSVEDAWQI--FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           + MYSKCG +  A ++  FE   E D  S   ++ G+ ++   E A+    KM     E+
Sbjct: 426 VRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS---EV 482

Query: 357 DPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            PN    S+ L        L  G QIH+ +I+  +  +  + + LI+MY KC   + SI+
Sbjct: 483 TPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIR 542

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F     R+ + WNSMI   A  G G   L+L++EM+ +G++   VTFL  L +C   G 
Sbjct: 543 IFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGH 602

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V  G  +   M +   I PR EHY C+++++G+ G ++E   F+E MP +P   +W  + 
Sbjct: 603 VRLGRSYFTLMMD-ESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIF 661

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             C  +G+ ++G+ AA+ +  + P +P  ++   +  S  G
Sbjct: 662 DCCREYGNRKLGERAAKCINDSNPLTPVQFVATVDYESNDG 702



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 228/495 (46%), Gaps = 45/495 (9%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T ++N  +     C  + +A +LFD MP+RD  SWN +++   R G        F     
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           LG    D A+   +LS C        ++ +H  +    ++  V +G AL+  Y  C   +
Sbjct: 145 LGIRPKD-ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLA 203

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R+ F ++   N I+W  ++       + +  + +F +M    + P   T   +V+AC 
Sbjct: 204 DARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACR 263

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE------------------- 309
              AL EGR IH  + +   +  + + S+++DMY+KCG+++                   
Sbjct: 264 DNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTS 323

Query: 310 ------------DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
                       DA ++FE  +E + VS   +L G+ ++     A+ LF +M +   E D
Sbjct: 324 IVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFD 383

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK--V 415
              + +VL        +G G+++H+  IK  F S+P + N L+ MYSKCG L  + +  +
Sbjct: 384 AITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLL 443

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F   + R+S SWNS+I+ + RH     AL    +M+ E V P   TF S L AC+++ L+
Sbjct: 444 FEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLL 502

Query: 476 NKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            +GM+     ++   E+  I       + ++DM  +      +    E  P + DV++W 
Sbjct: 503 KQGMQIHAYMIRKGYEIDDIL-----RSVLIDMYCKCRQFDYSIRIFEARPSR-DVILWN 556

Query: 532 ALLGACSIHGDSEMG 546
           +++  C+  G  E G
Sbjct: 557 SMIFGCAYSGKGEYG 571



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 182/397 (45%), Gaps = 45/397 (11%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N  I S   CGS +  R++F  M +R+  +W A+I+   +     E L LF  M+   I 
Sbjct: 89  NRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIR 148

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P   T  S +  C+    LC  RQ+HG + K   QS++ + +AL+D+Y  C  + DA + 
Sbjct: 149 PKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRA 208

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+   E + +S  VI+  +   G  + A+ +F +M+ AG+      VS  +     + +L
Sbjct: 209 FDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNAL 268

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE------------------------ 410
             G+ IH+ +++  +  +  V + +++MY+KCG ++                        
Sbjct: 269 EEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGL 328

Query: 411 -------DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
                  D+ +VF  M  RN VSWN+M+  + R  +   AL L+++M+ E  E   +T  
Sbjct: 329 ASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLG 388

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEA-RS 516
           S+L AC+ +  + KG        EVH  + +   ++       +V M  + G L  A R 
Sbjct: 389 SVLSACTGILDIGKG-------EEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERL 441

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
            +  M  + D   W +L+     H  SE   YA  K+
Sbjct: 442 LLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKM 478



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 190/441 (43%), Gaps = 40/441 (9%)

Query: 57  EGHFHLGPSLHASFIKTFEPFDNQNVYNVP--NATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           E H H+  S+   + K       Q+++N+      V+  S++S    C ++ +A ++F+ 
Sbjct: 284 EHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEG 343

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  R+ VSWN M++G++R+ +       F++ +     + D  +   +LSAC        
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQ-MRQETREFDAITLGSVLSACTGILDIGK 402

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK--VFGEMRVRNVITWTAVISGL 232
            + +H     CG+     + NAL+  Y KCG   S  +  +F     R+  +W ++ISG 
Sbjct: 403 GEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGY 462

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
            ++ + E  L    KM    + PN  T+ S++ AC+ +  L +G QIH  + +   + D 
Sbjct: 463 ERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDD 521

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + S L+DMY KC   + + +IFE     D +    ++ G A +G  E  + LF +M K 
Sbjct: 522 ILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQ 581

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           GI+ D       L     +  + LG+   +L+                        +++S
Sbjct: 582 GIKADSVTFLGALVSCISEGHVRLGRSYFTLM------------------------MDES 617

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           I       PR    +  MI    +HG   +  +  E M     EPT   +L +   C   
Sbjct: 618 I------IPRIE-HYECMIELLGKHGCMVELEDFVEHMPF---EPTTAMWLRIFDCCREY 667

Query: 473 GLVNKGMEFLKSMTEVHRISP 493
           G    G    K + + + ++P
Sbjct: 668 GNRKLGERAAKCINDSNPLTP 688



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+ N  I   + CG + D+ ++F  M  R+  SWN++I A +R G+  +AL L+  M   
Sbjct: 86  FLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL 145

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+ P D T  S+L  C+   L   G   L                  +VD+ G   LL +
Sbjct: 146 GIRPKDATMASVLSCCAEC-LDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF--LAQPDSPAPYILMANIY 571
           AR   + + ++P+ + W  ++    + G   MG  A +  F  L+    P  Y +   + 
Sbjct: 205 ARRAFDDI-LEPNAISWNVIVRRYHLAG---MGDMAVDMFFRMLSAGVRPLGYTVSHAVL 260

Query: 572 SC 573
           +C
Sbjct: 261 AC 262



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 14/179 (7%)

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +KS F +  F+ N L++ Y++ G L D+ +VF  +   N+ S+N++++A AR G    A 
Sbjct: 787 LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE----VHRISPRAEHYAC 500
            L+  +     +P   ++ +++ A +        + FL +M      ++  S  +   AC
Sbjct: 847 ALFHAIP----DPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSAC 902

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
             +   R G+ + A   + + P   DV +  ALL    ++   E  +  A ++F A P+
Sbjct: 903 AAEKDSRTGVQVHA--LVSKSPHAKDVYIGSALL---DMYAKCEWPE-EARRVFEAMPE 955


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 299/529 (56%), Gaps = 2/529 (0%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MP R+ VSW  M+SG  +N +F      F   + +      Q +F+  + AC       +
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFC-GMRICGEVPTQFAFSSAIRACASLGSIEM 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            K +HCL    G   E+ VG+ L   Y KCG+     KVF EM  ++ ++WTA+I G  +
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
              +EE L  F KM    +  +     S++ AC  L+A   GR +H  + KL  +SD+ +
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGV-SMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
            +AL DMYSK G +E A  +F    E   V S T ++ G+ +    E+ + +FV++ + G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           IE +    S+++       +L  G Q+H+ ++K +F  +PFV++ L++MY KCG LE +I
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           + F  +     ++WNS+++ F +HG G  A++++E M   GV+P  +TF+SLL  CSH G
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV +G+++  SM + + + P  EHY+CV+D++GRAG L EA+ FI RMP +P+   W + 
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC IHGD EMGK AAEKL   +P +    +L++NIY+   +W++      RM++  V 
Sbjct: 420 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           K  G SW+++  + H F  +D  HP+   I+  L  LL  +   GYVP 
Sbjct: 480 KLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPR 528



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 208/425 (48%), Gaps = 22/425 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S  +   A  G   +G  +H   +K          + + +   + ++L   Y KC  M +
Sbjct: 45  SSAIRACASLGSIEMGKQMHCLALK----------FGIGSELFVGSNLEDMYSKCGAMFD 94

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+F++MP +D VSW  M+ G+ + GEF+     FK+ ++     +DQ      L AC 
Sbjct: 95  ACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV-TIDQHVLCSTLGACG 153

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG-EMRVRNVITWT 226
             +     + +H  V   G+E ++ VGNAL   Y K G   S   VFG +   RNV+++T
Sbjct: 154 ALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYT 213

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I G V+ +  E+GL +FV++    I PN  T+ S + AC+   AL +G Q+H  + K+
Sbjct: 214 CLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKI 273

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
               D  + S L+DMY KCG +E A Q F+   +   ++   ++  F Q+G  ++A+++F
Sbjct: 274 NFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIF 333

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN----NGLINM 402
            +MV  G++  PN ++ +  + G  +  GL ++        D T          + +I++
Sbjct: 334 ERMVDRGVK--PNAITFISLLTGC-SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDL 390

Query: 403 YSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
             + G L+++ +  +RM    N+  W S + A   HG+  K +      KL  +EP +  
Sbjct: 391 LGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGD--KEMGKLAAEKLVKLEPKNSG 448

Query: 462 FLSLL 466
            L LL
Sbjct: 449 ALVLL 453


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 209/611 (34%), Positives = 330/611 (54%), Gaps = 17/611 (2%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N    + +LS  A +G   LG  +HA  +K          +   +   + NSL++ Y
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVK----------FGCRSTVFVCNSLINMY 246

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +F  M  RD VSWNT+++G L N         F  S      +L Q+++
Sbjct: 247 SKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDS-RASMAKLSQSTY 305

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR- 218
           + ++  C   +   +++ +H  V   G+  +  V  A++ +Y KCG       +F  M  
Sbjct: 306 STVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPG 365

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +NV++WTA+I G +QN        LF +M    + PN  TY S+V+  S    L    Q
Sbjct: 366 SQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTY-STVLTASIPILL---PQ 421

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  + K   Q    + +AL+  YSK G+ E+A  IF+  +  D V+ + +L  ++Q G 
Sbjct: 422 IHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGD 481

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNN 397
            + A  +F+KM   G++ +   +S+ +      T+ +  G+Q H++ IK  +     V +
Sbjct: 482 CDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGS 541

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L+ MY++ G ++ +  VF R   R+ VSWNSMI+ +A+HG   +AL+ + +M+  G+E 
Sbjct: 542 ALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEM 601

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
              TFL+++  C+H GLV +G ++  SM   H ISP  EHY+C+VD+  RAG L E  + 
Sbjct: 602 DGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNL 661

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           IE MP     +VW+ LLGAC +H + E+GK AA+KL L +PD  A Y+L++NIY+ +GRW
Sbjct: 662 IEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRW 721

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           KER +  K M    V KE G SWI+I+ +VHSF+  DK HP ++ I+  L  +   +  E
Sbjct: 722 KERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQE 781

Query: 638 GYVPNKRFILH 648
           GY PN   +LH
Sbjct: 782 GYCPNTSVVLH 792



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 142/524 (27%), Positives = 253/524 (48%), Gaps = 41/524 (7%)

Query: 40  VLDNYVDI-----------SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA 88
            LD++VD+           SR+L +         G  LH   +K    FD   V      
Sbjct: 84  ALDHFVDVHRCGRVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKC--GFDRAEVG----- 136

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
             +  +L+  Y+KC  + +   +F+ MP R+ V+W ++++G+++          F R   
Sbjct: 137 --VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRA 194

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G +  +  +FT +LSA        + + +H      G    V V N+LI  Y KCG   
Sbjct: 195 EGVWP-NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVE 253

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             + VF +M  R++++W  +++GL+ N+   E L+LF      +   +  TY + +  C+
Sbjct: 254 EAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCA 313

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMT 327
            L+ L   RQ+H  + K    SD  + +A+MD YSKCG ++DA+ IF       + VS T
Sbjct: 314 NLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWT 373

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G  QN     A  LF +M +  ++ +    S VL      +   L  QIH+ IIK+
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVL----TASIPILLPQIHAQIIKT 429

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           ++   P V   L+  YSK G+ E+++ +F  +  ++ V+W++M++ +++ G+   A  ++
Sbjct: 430 NYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVF 489

Query: 448 EEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGMEFLKSMTEVHRISP--RAEHYACV--- 501
            +M ++G++P + T  S + AC S    +++G +F       H IS   R +   CV   
Sbjct: 490 IKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQF-------HAISIKYRYQDAICVGSA 542

Query: 502 -VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            V M  R G +  AR   ER   + D++ W +++   + HG S+
Sbjct: 543 LVTMYARKGSIDSARIVFERQTDR-DLVSWNSMISGYAQHGYSK 585



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 232/474 (48%), Gaps = 16/474 (3%)

Query: 108 AVKLFDDMPMRDTVSWNT----MVSGFLRNGE-FDMGFGFFKRSLELGFYQLDQASFTII 162
           A +  D MP RD  + ++     +  + R G+        F      G  Q   A+ + +
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCGRVQ--GAAVSRV 105

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           L  C      +  + +HCL   CG++  EV VG AL+  Y KCG    GR VF  M  RN
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWT++++G VQ +   + + LF +M    + PN  T+ S + A +   A+  GR++H 
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K   +S + + ++L++MYSKCG VE+A  +F   E  D VS   ++ G   N  + E
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+QLF     +  ++  +  S V+ +      L L +Q+HS ++K  F S+  V   +++
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMD 345

Query: 402 MYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            YSKCG+L+D+  +F  M   +N VSW +MI    ++ +   A  L+  M+ + V+P + 
Sbjct: 346 AYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEF 405

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T+ ++L A   + L     + +K+    ++ +P       ++    + G   EA S I +
Sbjct: 406 TYSTVLTASIPILLPQIHAQIIKTN---YQHAPSVG--TALLASYSKLGNTEEALS-IFK 459

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           M    DV+ W A+L   S  GD +       K+ + Q   P  + + + I +C+
Sbjct: 460 MIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSM-QGMKPNEFTISSAIDACA 512


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 316/560 (56%), Gaps = 5/560 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y  C  + +A  +FD +  +D V+W  MVS +  N   +     F + + + 
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSK-MRMA 245

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIH-CLV-YLCGYEEEVTVGNALITSYFKCGSSS 208
             + +    T +L A      +++ K IH C V  LC  + E  VG AL+  Y KCG   
Sbjct: 246 GAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLC--DTEPHVGGALLDMYAKCGYIE 303

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R VF  +   +VI W+ +IS   Q+   E+  ++F++M    + PN  +    + AC+
Sbjct: 304 DARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACA 363

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +  L  G+QIH ++ KL  +S+L + +ALMD+Y+KC ++E++ +IF    + + VS   
Sbjct: 364 NVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNT 423

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+VG+ Q+GF E+A+ +F +M  A +       S+VL       S+    QIHSLI KS 
Sbjct: 424 IIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKST 483

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F ++  V N LI+ Y+KCG + D++KVF  +   + VSWN++I+ +A HG    ALEL+ 
Sbjct: 484 FNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFN 543

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M     +P DVTF++LL  C   GLVN+G+    SMT  HRI P  +HY C+V ++GRA
Sbjct: 544 RMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRA 603

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FI  +P  P  +VW+ALL +C +H +  +GK++AEK+   +P     Y+L++
Sbjct: 604 GRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLS 663

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ +G   + A   K M+ +GV KE G+SW+EI+ +VH+F V    HP    I+ +L 
Sbjct: 664 NMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLE 723

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L      EGYVP+   +LH
Sbjct: 724 WLNLKASREGYVPDINVVLH 743



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 270/531 (50%), Gaps = 16/531 (3%)

Query: 13  NFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK 72
           N P   +L +    + + D  +S +   LD+Y   +RLL      G    G ++HA  ++
Sbjct: 17  NVPLRRNLAANAALQWLDDELASLALPKLDSYA-CARLLQRCIARGDARAGRAVHARVVQ 75

Query: 73  T--FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
                  D          T   N LL+ Y K   +  A +LFD MP R+ VS+ T+V G+
Sbjct: 76  RGGVAQLD----------TFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGY 125

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
              G F+   G F+R L+   ++++    T IL      +   ++  IH      G++  
Sbjct: 126 ALRGGFEEAAGLFRR-LQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRN 184

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             VG++LI +Y  CG+ S  R VF  +  ++ +TWTA++S   +N + E+ L  F KM +
Sbjct: 185 AFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRM 244

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               PN     S + A   L +   G+ IHG   K    ++  +  AL+DMY+KCG +ED
Sbjct: 245 AGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIED 304

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +FE     D +  + ++  +AQ+   E+A ++F++M+++ +  +   +S VL     
Sbjct: 305 ARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACAN 364

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L LG+QIH+L+IK  + S  FV N L+++Y+KC ++E+S+++F  +   N VSWN++
Sbjct: 365 VAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTI 424

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  + + G    AL +++EM+   V  T VTF S+L AC++   +   ++ + S+ E   
Sbjct: 425 IVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQ-IHSLIEKST 483

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +        ++D   + G + +A    E + ++ DV+ W A++   ++HG
Sbjct: 484 FNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHG 533



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N T++ NSL+  Y KC  +R+A+K+F+ +   D VSWN ++SG+  +G        F R 
Sbjct: 486 NDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNR- 544

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           +     + +  +F  +LS C  + L
Sbjct: 545 MNKSDTKPNDVTFVALLSVCGSTGL 569


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/502 (38%), Positives = 303/502 (60%), Gaps = 7/502 (1%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D+  +  +L  C         K++H  +    +  ++ + N+++  Y KCGS   
Sbjct: 85  GSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEI 144

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEG---LKLFVKMHLGLINPNSLTYLSSVMA 266
            R+VF EM V++V+TWT++I+G  Q+         L LF++M    + PN    LSS++ 
Sbjct: 145 ARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFA-LSSLVK 203

Query: 267 CSGLQALC-EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           C G    C +G+QIHG  WK   Q ++ + S+L+DMY++CG + ++  +F+  E  + VS
Sbjct: 204 CCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVS 263

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ GFA+ G  EEA+ LFVKM + G        SA+L       SL  GK +H+ ++
Sbjct: 264 WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMM 323

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS      +V N L++MY+K G++ D+ KVF R+   + VS NSM+  +A+HG G +A+E
Sbjct: 324 KSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVE 383

Query: 446 LYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           L+EEM L   +EP D+TFLS+L ACSH GL+++G+ + + M + + + P+  HY  VVD+
Sbjct: 384 LFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDL 442

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
            GRAGLL +A+SFIE MP++P+  +W ALLGA  +H ++EMG YAA+K+    P  P  +
Sbjct: 443 FGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAH 502

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
            L++NIY+ +G+WK+ AK  K MK+ G+ KE   SW+EIE  VH F  +D  HPQ + ++
Sbjct: 503 TLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVY 562

Query: 625 GVLAELLRLMIDEGYVPNKRFI 646
            +   L + + + GYVP+   +
Sbjct: 563 EMWENLNQKIKEIGYVPDTSHV 584



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 210/405 (51%), Gaps = 26/405 (6%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           GL +   ++ G + P+   Y   +  C+ L  L +G+ +H  L     ++DL I+++++ 
Sbjct: 75  GLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILF 134

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE---AMQLFVKMVKAGIEID 357
           MY+KCGS+E A Q+F+     D V+ T ++ G++Q+G+      A+ LF++MV+ G+  +
Sbjct: 135 MYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPN 194

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              +S+++   G   S   GKQIH    K  F  N FV + L++MY++CG+L +S  VF 
Sbjct: 195 EFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFD 254

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  +N VSWN++I+ FAR G G +AL L+ +M+ EG   T+ T+ +LL + S  G + +
Sbjct: 255 ELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQ 314

Query: 478 GMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           G      M +  +   +   Y    ++ M  ++G + +A+   +R+ VK DV+   ++L 
Sbjct: 315 GKWLHAHMMKSGK---KLVGYVGNTLLHMYAKSGNICDAKKVFDRL-VKVDVVSCNSMLI 370

Query: 536 ACSIHGDSEMGKYAA---EKLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEM 590
             + HG   +GK A    E++ L     P     ++ + +CS  G   E     + MK+ 
Sbjct: 371 GYAQHG---LGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKY 427

Query: 591 GVDKETGISWIEIE--------KQVHSFVVDDKMHPQADTIHGVL 627
           G++ +       ++         Q  SF+ +  + P A TI G L
Sbjct: 428 GLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNA-TIWGAL 471



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 194/390 (49%), Gaps = 11/390 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  VI NS+L  Y KC  +  A ++FD+M ++D V+W +M++G+ ++G            
Sbjct: 124 NDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLF 183

Query: 147 LELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           LE+    L    F +  ++  C      +  K IH   +  G++E V VG++L+  Y +C
Sbjct: 184 LEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARC 243

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R VF E+  +N ++W A+ISG  +    EE L LFVKM          TY + +
Sbjct: 244 GELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALL 303

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            + S   +L +G+ +H  + K   +    + + L+ MY+K G++ DA ++F+   ++D V
Sbjct: 304 CSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVV 363

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIH 381
           S   +L+G+AQ+G  +EA++LF +M+   +EI+PN ++  L V    +  GL   G    
Sbjct: 364 SCNSMLIGYAQHGLGKEAVELFEEMM-LWVEIEPNDIT-FLSVLTACSHAGLLDEGLYYF 421

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGN 439
            L+ K            +++++ + G L D  K F    P   N+  W +++ A   H N
Sbjct: 422 ELMKKYGLEPKLSHYTTVVDLFGRAG-LLDQAKSFIEEMPIEPNATIWGALLGASKMHKN 480

Query: 440 G-FKALELYEEMKLEGVEPTDVTFLSLLHA 468
               A    + ++L+   P   T LS ++A
Sbjct: 481 TEMGAYAAQKVLELDPFYPGAHTLLSNIYA 510



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 2/235 (0%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y       + +SL+  Y +C ++R +  +FD++  ++ VSWN ++SGF R GE +   G 
Sbjct: 224 YGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGL 283

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F +    GF   +     ++ S+     L    K +H  +   G +    VGN L+  Y 
Sbjct: 284 FVKMQREGFGATEFTYSALLCSSSTTGSLE-QGKWLHAHMMKSGKKLVGYVGNTLLHMYA 342

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYL 261
           K G+    +KVF  +   +V++  +++ G  Q+ L +E ++LF +M L + I PN +T+L
Sbjct: 343 KSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFL 402

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           S + ACS    L EG     ++ K  L+  L   + ++D++ + G ++ A    E
Sbjct: 403 SVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIE 457


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 335/588 (56%), Gaps = 12/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HAS +K+     +  +Y       + N+L++ Y +C +M  A ++   M   D V
Sbjct: 265 LGKEIHASVLKS--STHSSELY-------VCNALIAMYTRCGKMPQAERILRQMNNADVV 315

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+++ G+++N  +     FF   +  G ++ D+ S T I++A  R    L    +H  
Sbjct: 316 TWNSLIKGYVQNLMYKEALEFFSDMIAAG-HKSDEVSMTSIIAASGRLSNLLAGMELHAY 374

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V   G++  + VGN LI  Y KC  +    + F  M  +++I+WT VI+G  QN  + E 
Sbjct: 375 VIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEA 434

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF  +    +  + +   S + A S L+++   ++IH  + +  L  D  I++ L+D+
Sbjct: 435 LELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DTVIQNELVDV 493

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC ++  A ++FE  +  D VS T ++   A NG E EA++LF +MV+ G+  D   +
Sbjct: 494 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 553

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +L      ++L  G++IH  +++  F     +   +++MY+ CGDL+ +  VF R+  
Sbjct: 554 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 613

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  + + SMI A+  HG G  A+EL+++M+ E V P  ++FL+LL+ACSH GL+++G  F
Sbjct: 614 KGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGF 673

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           LK M   + + P  EHY C+VDM+GRA  ++EA  F++ M  +P   VW ALL AC  H 
Sbjct: 674 LKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHS 733

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G+ AA++L   +P +P   +L++N+++  GRW +  K   +MK  G++K  G SWI
Sbjct: 734 EKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWI 793

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           E++ +VH F   DK HP++  I+  L+E+ R +  E GYV + +F+LH
Sbjct: 794 EMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLH 841



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 154/532 (28%), Positives = 260/532 (48%), Gaps = 27/532 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   AK      G  LH+  +K              +   I N+L+S Y K D +  A 
Sbjct: 151 LLKACAKLRDIRSGSELHSLLVK----------LGYHSTGFIVNALVSMYAKNDDLSAAR 200

Query: 110 KLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII--LSAC 166
           +LFD    + D V WN+++S +  +G+       F+   E+        S+TI+  L+AC
Sbjct: 201 RLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFR---EMHMTGPAPNSYTIVSALTAC 257

Query: 167 DRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           D    + + K IH  V     +  E+ V NALI  Y +CG      ++  +M   +V+TW
Sbjct: 258 DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTW 317

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG-LQALCEGRQIHGILW 284
            ++I G VQN +Y+E L+ F  M +   + +    ++S++A SG L  L  G ++H  + 
Sbjct: 318 NSLIKGYVQNLMYKEALEFFSDM-IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVI 376

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K    S+L + + L+DMYSKC       + F    + D +S T ++ G+AQN    EA++
Sbjct: 377 KHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALE 436

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF  + K  +EID  ++ ++L    V  S+ + K+IH  I++     +  + N L+++Y 
Sbjct: 437 LFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DTVIQNELVDVYG 495

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KC ++  + +VF  +  ++ VSW SMI++ A +GN  +A+EL+  M   G+    V  L 
Sbjct: 496 KCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLC 555

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L A + +  +NKG E    +               VVDM    G L  A++  +R+  K
Sbjct: 556 ILSAAASLSALNKGREIHCYLLR-KGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERK 614

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCS 574
             +L + +++ A  +HG    GK A E     + +  SP     +A +Y+CS
Sbjct: 615 -GLLQYTSMINAYGMHG---CGKAAVELFDKMRHENVSPDHISFLALLYACS 662



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 229/447 (51%), Gaps = 19/447 (4%)

Query: 106 RNAV---KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           R AV   K+FD+MP R   +WNTM+  ++ NGE       +  ++ +    L  +SF  +
Sbjct: 93  RRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALY-WNMRVEGVPLGLSSFPAL 151

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRVRN 221
           L AC +         +H L+   GY     + NAL++ Y K    S+ R++F G     +
Sbjct: 152 LKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGD 211

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            + W +++S    +    E L+LF +MH+    PNS T +S++ AC G      G++IH 
Sbjct: 212 AVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHA 271

Query: 282 ILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            + K +   S+L + +AL+ MY++CG +  A +I       D V+   ++ G+ QN   +
Sbjct: 272 SVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYK 331

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA++ F  M+ AG + D   +++++   G  ++L  G ++H+ +IK  + SN  V N LI
Sbjct: 332 EALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLI 391

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYSKC       + F RM  ++ +SW ++IA +A++    +ALEL+ ++  + +E  ++
Sbjct: 392 DMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEM 451

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGRAGLLIEAR 515
              S+L A S    V K M  +K   E+H    R      V     VD+ G+   +  A 
Sbjct: 452 ILGSILRASS----VLKSMLIVK---EIHCHILRKGLLDTVIQNELVDVYGKCRNMGYAT 504

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGD 542
              E +  K DV+ W +++ + +++G+
Sbjct: 505 RVFESIKGK-DVVSWTSMISSSALNGN 530



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 166/340 (48%), Gaps = 12/340 (3%)

Query: 204 CGS--SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
           CG   + S  KVF EM  R    W  +I   V N      L L+  M +  +     ++ 
Sbjct: 90  CGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEE 320
           + + AC+ L+ +  G ++H +L KL   S   I +AL+ MY+K   +  A ++F+ F E+
Sbjct: 150 ALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 209

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGK 378
            D V    IL  ++ +G   E ++LF +M   G    PN  + V  +   D  +   LGK
Sbjct: 210 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPA--PNSYTIVSALTACDGFSYAKLGK 267

Query: 379 QIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +IH+ ++KS   +S  +V N LI MY++CG +  + ++  +M   + V+WNS+I  + ++
Sbjct: 268 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 327

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               +ALE + +M   G +  +V+  S++ A   +  +  GME L +    H      + 
Sbjct: 328 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGME-LHAYVIKHGWDSNLQV 386

Query: 498 YACVVDMVGRAGLLIE-ARSFIERMPVKPDVLVWQALLGA 536
              ++DM  +  L     R+F+ RM  K D++ W  ++  
Sbjct: 387 GNTLIDMYSKCNLTCYMGRAFL-RMHDK-DLISWTTVIAG 424


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 316/605 (52%), Gaps = 17/605 (2%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           + + LL +   E    +G  +H   +K+    D                L + Y KC Q+
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLD----------LFAMTGLENMYAKCRQV 186

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS- 164
             A K+FD MP RD VSWNT+V+G+ +NG   M         E       + SF  I+S 
Sbjct: 187 HEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENL----KPSFITIVSV 242

Query: 165 --ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
             A     L  + K IH      G++  V +  AL+  Y KCGS  + R +F  M  RNV
Sbjct: 243 LPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNV 302

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W ++I   VQN+  +E + +F KM    + P  ++ + ++ AC+ L  L  GR IH +
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             +L L  ++ + ++L+ MY KC  V+ A  +F   +    VS   +++GFAQNG   EA
Sbjct: 363 SVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEA 422

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +  F +M    ++ D     +V+      +     K IH +++++    N FV   L++M
Sbjct: 423 LNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDM 482

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG +  +  +F  M+ R+  +WN+MI  +  HG G  ALEL+EEM+   + P  VTF
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTF 542

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           LS++ ACSH GLV  G++    M E + I P  +HY  +VD++GRAG L EA  FI +MP
Sbjct: 543 LSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           VKP V V+ A+LGAC IH +    +  AE+LF   P+    ++L+ANIY  +  W++  +
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQ 662

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               M   G+ K  G S +EI+ +VHSF      HP +  I+  L +L+  + + GYVP+
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPD 722

Query: 643 KRFIL 647
              IL
Sbjct: 723 TNLIL 727



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/507 (28%), Positives = 251/507 (49%), Gaps = 26/507 (5%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR----SLELG 150
           L+S + +   +  A ++F+ +  +  V + TM+ GF +  + D    FF R     +E  
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 151 FYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            Y     +FT +L  C D +EL  V K IH L+   G+  ++     L   Y KC     
Sbjct: 135 VY-----NFTYLLKVCGDEAELR-VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHE 188

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RKVF  M  R++++W  +++G  QN +    L++   M    + P+ +T +S + A S 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSA 248

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ +  G++IHG   +    S + I +AL+DMY+KCGS++ A  +F+   E + VS   +
Sbjct: 249 LRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSM 308

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIK 386
           +  + QN   +EAM +F KM+  G++  P  VS V+G       LG    G+ IH L ++
Sbjct: 309 IDAYVQNENPKEAMVIFQKMLDEGVK--PTDVS-VMGALHACADLGDLERGRFIHKLSVE 365

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +   N  V N LI+MY KC +++ +  +F ++  R  VSWN+MI  FA++G   +AL  
Sbjct: 366 LELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNY 425

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M+   V+P   T++S++ A + + + +   +++  +   + +         +VDM  
Sbjct: 426 FSQMQARTVKPDTFTYVSVITAIAELSITHHA-KWIHGVVMRNCLDKNVFVTTALVDMYA 484

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPY 564
           + G ++ AR   + M  +  V  W A++     HG   +GK A E     Q  +  P   
Sbjct: 485 KCGAIMIARLIFDMMSER-HVTTWNAMIDGYGTHG---IGKAALELFEEMQKGTIRPNGV 540

Query: 565 ILMANIYSC--SGRWKERAKAIKRMKE 589
             ++ I +C  SG  +   K    MKE
Sbjct: 541 TFLSVISACSHSGLVEAGLKCFHMMKE 567



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 158/298 (53%)

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           L++  G  +E      L++ + + GS     +VF  +  +  + +  ++ G  +    ++
Sbjct: 59  LIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDK 118

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            LK FV+M    + P    +   +  C     L  G++IHG+L K     DL   + L +
Sbjct: 119 ALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+KC  V +A ++F+   E D VS   I+ G++QNG    A+++   M +  ++     
Sbjct: 179 MYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFIT 238

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           + +VL        + +GK+IH   +++ F S   +   L++MY+KCG L+ +  +F  M 
Sbjct: 239 IVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGML 298

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            RN VSWNSMI A+ ++ N  +A+ ++++M  EGV+PTDV+ +  LHAC+ +G + +G
Sbjct: 299 ERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERG 356



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 181/340 (53%), Gaps = 20/340 (5%)

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS L+ L   R I  +++K  L  +   ++ L+ ++ + GSV++A ++FE  ++   V  
Sbjct: 47  CSSLKEL---RHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLY 103

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L GFA+    ++A++ FV+M    +E      + +L V G +  L +GK+IH L++K
Sbjct: 104 YTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S F+ + F   GL NMY+KC  + ++ KVF RM  R+ VSWN+++A ++++G    ALE+
Sbjct: 164 SGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----- 501
              M  E ++P+ +T +S+L A S + L+  G        E+H  + RA   + V     
Sbjct: 224 VNLMCEENLKPSFITIVSVLPAVSALRLIRIG-------KEIHGYAMRAGFDSLVNIATA 276

Query: 502 -VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
            VDM  + G L  AR   + M ++ +V+ W +++ A   + + +      +K+ L +   
Sbjct: 277 LVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNENPKEAMVIFQKM-LDEGVK 334

Query: 561 PAPYILMANIYSCSGRWK-ERAKAIKRMK-EMGVDKETGI 598
           P    +M  +++C+     ER + I ++  E+ +D+   +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 229/700 (32%), Positives = 354/700 (50%), Gaps = 112/700 (16%)

Query: 55  AKEGHFHLGPSLHASFIKT-FEPFD---NQNV------YNVPNATVIWN----------- 93
           A+  H     ++HA  + + F+PF    N+ +      +N+P A  +++           
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           ++LS Y     ++ A +LF+  PM  RDTVS+N M++ F  + +       F +   LGF
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 152 YQLDQASFTIILSACDRSELSLVS------KMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
              D  +F+ +L A     LSL++      + +HC V+  G     +V NAL++ Y  C 
Sbjct: 127 VP-DPFTFSSVLGA-----LSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA 180

Query: 206 SS---------SSGRKVFGEM----------------RVRN-----------------VI 223
           SS         ++ RK+F E                  VRN                  +
Sbjct: 181 SSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAV 240

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            W A+ISG V    YEE   L  +MH   I  +  TY S + A S       GRQ+H  +
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYV 300

Query: 284 WKLALQSD----LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM------------- 326
            +  +Q      L + +AL+ +Y++CG + +A ++F+     D VS              
Sbjct: 301 LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 327 ------------------TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
                             TV++ G AQNGF EE ++LF +M   G+E      +  +   
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
            V  SL  G+Q+HS II+    S+  V N LI MYS+CG +E +  VF  M   +SVSWN
Sbjct: 421 SVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWN 480

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           +MIAA A+HG+G +A++LYE+M  E + P  +TFL++L ACSH GLV +G  +  +M   
Sbjct: 481 AMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVC 540

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           + I+P  +HY+ ++D++ RAG+  EA++  E MP +P   +W+ALL  C IHG+ E+G  
Sbjct: 541 YGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQ 600

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AA++L    P     YI ++N+Y+  G+W E A+  K M+E GV KE G SWIE+E  VH
Sbjct: 601 AADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVH 660

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F+VDD +HP+   ++  L +L+  M   GYVP+ +F+LH
Sbjct: 661 VFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLH 700



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 137/304 (45%), Gaps = 32/304 (10%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI--------- 91
           LD Y   S ++S ++  G F++G  +HA  ++T        V +V NA +          
Sbjct: 272 LDEYTYTS-VISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLV 330

Query: 92  ----------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
                           WN++LS  +   ++  A  +F +MP+R  ++W  M+SG  +NG 
Sbjct: 331 EARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGF 390

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            + G   F +    G    D A    I S      L    + +H  +   G++  ++VGN
Sbjct: 391 GEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLD-NGQQLHSQIIQLGHDSSLSVGN 449

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           ALIT Y +CG   +   VF  M   + ++W A+I+ L Q+    + ++L+ KM    I P
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILP 509

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHG---ILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           + +T+L+ + ACS    + EGR       + + +  + D    S L+D+  + G   +A 
Sbjct: 510 DRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDH--YSRLIDLLCRAGMFSEAK 567

Query: 313 QIFE 316
            + E
Sbjct: 568 NVTE 571


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 185/546 (33%), Positives = 296/546 (54%), Gaps = 1/546 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N LL  Y  C    +  K+FD+M M++ VSW  ++S + +NGE +     F   ++  
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFS-DMQAS 182

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + + A +  +L +C       + K IH  V        +TV  A+   Y +CG     
Sbjct: 183 GIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGA 242

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF  M  +N +TWT ++ G  Q +  E  L+LF +M +  +  +   +   +  C GL
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGL 302

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +    GRQIH  + KL  +S++ + + L+D Y KCG +E A++ F    E + VS + ++
Sbjct: 303 EDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF+Q+G  E+ +++F  +   G+ ++  + ++V        +L +G Q H   IK    
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S  +  + ++ MYSKCG L+ + + F  +   ++V+W ++I+ +A HGN  +AL  +  M
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  GV P  VTF+++L ACSH GLV +  ++L SM+  + + P  +HY C++D   RAGL
Sbjct: 483 QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGL 542

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   I RMP +PD + W++LLG C  H D ++GK AAE LF   P   A YIL+ N+
Sbjct: 543 LQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNL 602

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           YS  G+W+E     K M E  + KE   SWI ++ QVH FVV D+ HPQ + I+  L E 
Sbjct: 603 YSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEF 662

Query: 631 LRLMID 636
              +ID
Sbjct: 663 KCSVID 668



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 214/422 (50%), Gaps = 13/422 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           S+  +  AC +       ++IH  +         ++ N L+  Y  CGS    +KVF EM
Sbjct: 89  SYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEM 148

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            ++N+++W  VIS   +N   E+ ++LF  M    I PNS  Y+S + +C G   L  G+
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QIH  + +  L +++ +E+A+ +MY +CG +E A  +F+  +  + V+ T ++VG+ Q  
Sbjct: 209 QIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAK 268

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E A++LF +M   G+E+D  + S VL V        +G+QIHS I+K    S   V  
Sbjct: 269 KLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGT 328

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++ Y KCGD+E + + F R++  N VSW+++I+ F++ G     ++++  ++ EGV  
Sbjct: 329 PLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVL 388

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
               + S+  AC+    +N G +      +   +S      A +V M  + G L  AR  
Sbjct: 389 NSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESA-MVTMYSKCGRLDYARRA 447

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL-FLAQPDS----PAPYILMANIYS 572
            E +  +PD + W A++   + HG+      AAE L F  +  S    P     +A + +
Sbjct: 448 FESID-EPDAVAWTAIISGYAYHGN------AAEALGFFRRMQSYGVRPNAVTFIAVLTA 500

Query: 573 CS 574
           CS
Sbjct: 501 CS 502



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV  ++ G  +EA     +M  A + + P+    +    G   SL  G+ IH  + ++  
Sbjct: 59  LVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK 118

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  + N L+ MY  CG   D  KVF  M  +N VSW  +I+A+A++G   KA+ L+ +
Sbjct: 119 NPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSD 178

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVD 503
           M+  G+ P    ++SLL +C        G  FL+   ++H    RA+  A       + +
Sbjct: 179 MQASGIRPNSAVYMSLLQSC-------LGPSFLELGKQIHSHVIRAQLNANITVETAICN 231

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           M  R G L  A+   + M  + + + W  L+
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQ-NAVTWTGLM 261


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/544 (34%), Positives = 310/544 (56%), Gaps = 6/544 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y+KC +M  A+++F+++   D V+W++MVSGF +NG       FF+R     
Sbjct: 79  VGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATAS 138

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ +   ++SAC +   S + + +H  V   G+  ++++ N+L+  Y K  +    
Sbjct: 139 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEA 198

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F  M  ++VI+W+ VI+  VQN    E L++F +M      PN  T L  + AC+  
Sbjct: 199 VNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAA 258

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +GR+ H +  +  L++++ + +AL+DMY KC S E+A+ +F    + D VS   ++
Sbjct: 259 NDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALI 318

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIKS 387
            GF  NG    +++ F  M+       P+ +  +L V G  + LG  KQ    HS +IK 
Sbjct: 319 SGFTLNGMAHRSIEEFSIMLLEN-NTRPDAI-LMLKVLGSCSELGFLKQAECFHSYVIKY 376

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SNPF+   L+ +YS+CG L ++ KVF+ +A +++V W S+I  +  HG G KALE +
Sbjct: 377 GFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETF 436

Query: 448 EEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             M +   V+P +VTFLS+L ACSH GL+++G+   + M   +R++P  EHYA +VD++G
Sbjct: 437 NHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLG 496

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R G L  A    +RMP  P   +   LLGAC IH + EM +  A++LF  + +    Y+L
Sbjct: 497 RVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKQLFELESNHAGYYML 556

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           M+N+Y   G W+   K    +K+ G+ K    S IEI ++VH FV DD +HP+ + ++G+
Sbjct: 557 MSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHKFVADDDLHPEKEPVYGL 616

Query: 627 LAEL 630
           L EL
Sbjct: 617 LKEL 620



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 218/463 (47%), Gaps = 6/463 (1%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  R    WNT++    R+  ++     F +       + D  +  + L AC        
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFR-DEEKPDNFTLPVALKACGELREVKY 59

Query: 175 SKMIHCLVYL-CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            +MIH  +        ++ VG++LI  Y KCG  +   ++F E+   +++TW++++SG  
Sbjct: 60  GEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFE 119

Query: 234 QNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
           +N    + ++ F +M     + P+ +T ++ V AC+ L     GR +HG + +    +DL
Sbjct: 120 KNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSNDL 179

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + ++L++ Y+K  + ++A  +F+   E D +S + ++  + QNG   EA+++F +M+  
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDD 239

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G E +   V  VL        L  G++ H L I+    +   V+  L++MY KC   E++
Sbjct: 240 GTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEA 299

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH 471
             VFSR+  ++ VSW ++I+ F  +G   +++E +  M LE    P  +  L +L +CS 
Sbjct: 300 YAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSCSE 359

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
           +G + K  E   S    +         A +V++  R G L  A      + +K D +VW 
Sbjct: 360 LGFL-KQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALK-DTVVWT 417

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           +L+    IHG           +  +    P     ++ + +CS
Sbjct: 418 SLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACS 460



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 62  LGPSLHASFIKTFEPFDNQNV-YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           LG      F+K  E F +  + Y   +   I  SL+  Y +C  + NA K+F+++ ++DT
Sbjct: 354 LGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDT 413

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           V W ++++G+  +G+       F   +     + ++ +F  ILSAC  + L
Sbjct: 414 VVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGL 464


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 335/588 (56%), Gaps = 12/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HAS +K+     +  +Y       + N+L++ Y +C +M  A ++   M   D V
Sbjct: 302 LGKEIHASVLKS--STHSSELY-------VCNALIAMYTRCGKMPQAERILRQMNNADVV 352

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+++ G+++N  +     FF   +  G ++ D+ S T I++A  R    L    +H  
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAG-HKSDEVSMTSIIAASGRLSNLLAGMELHAY 411

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V   G++  + VGN LI  Y KC  +    + F  M  +++I+WT VI+G  QN  + E 
Sbjct: 412 VIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEA 471

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF  +    +  + +   S + A S L+++   ++IH  + +  L  D  I++ L+D+
Sbjct: 472 LELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DTVIQNELVDV 530

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC ++  A ++FE  +  D VS T ++   A NG E EA++LF +MV+ G+  D   +
Sbjct: 531 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +L      ++L  G++IH  +++  F     +   +++MY+ CGDL+ +  VF R+  
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 650

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  + + SMI A+  HG G  A+EL+++M+ E V P  ++FL+LL+ACSH GL+++G  F
Sbjct: 651 KGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGF 710

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           LK M   + + P  EHY C+VDM+GRA  ++EA  F++ M  +P   VW ALL AC  H 
Sbjct: 711 LKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHS 770

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G+ AA++L   +P +P   +L++N+++  GRW +  K   +MK  G++K  G SWI
Sbjct: 771 EKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWI 830

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           E++ +VH F   DK HP++  I+  L+E+ R +  E GYV + +F+LH
Sbjct: 831 EMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLH 878



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 249/500 (49%), Gaps = 25/500 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L +  K      G  LH+   KTF  F+            +   L+  Y KC  + +A 
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFE---------LDFLAGKLVFMYGKCGSLDDAE 136

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+FD+MP R   +WNTM+  ++ NGE       +  ++ +    L  +SF  +L AC + 
Sbjct: 137 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALY-WNMRVEGVPLGLSSFPALLKACAKL 195

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAV 228
                   +H L+   GY     + NAL++ Y K    S+ R++F   + + + + W ++
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S    +    E L+LF +MH+    PNS T +S++ AC G      G++IH  + K + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 289 Q-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
             S+L + +AL+ MY++CG +  A +I       D V+   ++ G+ QN   +EA++ F 
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 375

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M+ AG + D   +++++   G  ++L  G ++H+ +IK  + SN  V N LI+MYSKC 
Sbjct: 376 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 435

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
                 + F RM  ++ +SW ++IA +A++    +ALEL+ ++  + +E  ++   S+L 
Sbjct: 436 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 495

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGRAGLLIEARSFIERMP 522
           A S    V K M  +K   E+H    R      V     VD+ G+   +  A    E + 
Sbjct: 496 ASS----VLKSMLIVK---EIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIK 548

Query: 523 VKPDVLVWQALLGACSIHGD 542
            K DV+ W +++ + +++G+
Sbjct: 549 GK-DVVSWTSMISSSALNGN 567



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 184/386 (47%), Gaps = 13/386 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVY--LCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           +F  +L  C +       + +H  ++     +E +   G  L+  Y KCGS     KVF 
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVFMYGKCGSLDDAEKVFD 140

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           EM  R    W  +I   V N      L L+  M +  +     ++ + + AC+ L+ +  
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFA 334
           G ++H +L KL   S   I +AL+ MY+K   +  A ++F+ F E+ D V    IL  ++
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHSLIIKSD-FTS 391
            +G   E ++LF +M   G    PN  + V  +   D  +   LGK+IH+ ++KS   +S
Sbjct: 261 TSGKSLETLELFREMHMTGPA--PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             +V N LI MY++CG +  + ++  +M   + V+WNS+I  + ++    +ALE + +M 
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI 378

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G +  +V+  S++ A   +  +  GME L +    H      +    ++DM  +  L 
Sbjct: 379 AAGHKSDEVSMTSIIAASGRLSNLLAGME-LHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437

Query: 512 IE-ARSFIERMPVKPDVLVWQALLGA 536
               R+F+ RM  K D++ W  ++  
Sbjct: 438 CYMGRAFL-RMHDK-DLISWTTVIAG 461



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 17/220 (7%)

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           VL + G   ++  G+Q+HS I K+ F S    F+   L+ MY KCG L+D+ KVF  M  
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKT-FPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPD 144

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R + +WN+MI A+  +G    AL LY  M++EGV     +F +LL AC+ +  +  G   
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG--- 201

Query: 482 LKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
               +E+H +  +  +++       +V M  +   L  AR   +    K D ++W ++L 
Sbjct: 202 ----SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           + S  G S        ++ +  P +P  Y +++ + +C G
Sbjct: 258 SYSTSGKSLETLELFREMHMTGP-APNSYTIVSALTACDG 296


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 335/640 (52%), Gaps = 62/640 (9%)

Query: 60  FHLGPSLHAS-FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F  G S+HA  F   FE       +NV     + N L+S Y +C    NA ++FD+M  R
Sbjct: 142 FRCGASVHAVVFASGFE-------WNV----FVGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 119 ---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
              D VSWN++V+ +++ G+       F+R  E    + D  S   +L AC         
Sbjct: 191 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR--------------- 220
           K +H      G  E+V VGNA++  Y KCG      KVF  M+V+               
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 221 --------------------NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
                               NV+TW+AVI+G  Q  L  E L +F +M L    PN +T 
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 261 LSSVMACSGLQALCEGRQIH--GILWKLALQ-----SDLCIESALMDMYSKCGSVEDAWQ 313
           +S +  C+    L  G++ H   I W L L       DL + +AL+DMYSKC S + A  
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430

Query: 314 IFEFAEELDG--VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFG 369
           +F+     D   V+ TV++ G AQ+G   EA++LF +M++    + PN   +S  L    
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 490

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
              +L  G+QIH+ ++++ F S   FV N LI+MYSK GD++ +  VF  M  RN VSW 
Sbjct: 491 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 550

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           S++  +  HG G +AL+++ EM+  G+ P  VTF+ +L+ACSH G+V++G+ +   M + 
Sbjct: 551 SLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 610

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
             + P AEHYAC+VD++ RAG L EA   I  MP+KP   VW ALL AC ++ + E+G+Y
Sbjct: 611 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 670

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AA +L   +  +   Y L++NIY+ +  WK+ A+    MK  G+ K  G SW++  K   
Sbjct: 671 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 730

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +F   D  HP +  I+ +L +L++ +   GYVP+ RF LH
Sbjct: 731 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALH 770



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 251/535 (46%), Gaps = 61/535 (11%)

Query: 95  LLSFYLKCDQMRNAVKLFDDM-PMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++S YL  +    A+ +   + P   TV W N ++   +  G  +     ++R   LG +
Sbjct: 64  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-W 122

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L AC           +H +V+  G+E  V VGN L++ Y +CG+  + R+
Sbjct: 123 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 182

Query: 213 VFGEMRVRNV---ITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACS 268
           VF EMR R V   ++W ++++  +Q       +K+F +M   L I P++++ ++ + AC+
Sbjct: 183 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 242

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            + A   G+Q+HG   +  L  D+ + +A++DMY+KCG +E+A ++FE  +  D VS   
Sbjct: 243 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 302

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEI-------------------------------- 356
           ++ G++Q G  ++A+ LF K+ +  IE+                                
Sbjct: 303 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCG 362

Query: 357 -DPNMVSAV--LGVFGVDTSLGLGKQIHSLIIK-------SDFTSNPFVNNGLINMYSKC 406
            +PN+V+ V  L    +  +L  GK+ H   IK       +D   +  V N LI+MYSKC
Sbjct: 363 SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKC 422

Query: 407 GDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPTDVTF 462
              + +  +F  + P  R+ V+W  +I   A+HG   +ALEL+ +M      V P   T 
Sbjct: 423 KSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTI 482

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
              L AC+ +G +  G +    +      S       C++DM  ++G +  AR   + M 
Sbjct: 483 SCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMH 542

Query: 523 VKPDVLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCS 574
            +  V  W +L+    +HG  E      Y  +K+ L     P     +  +Y+CS
Sbjct: 543 QRNGV-SWTSLMTGYGMHGRGEEALQIFYEMQKVGLV----PDGVTFVVVLYACS 592



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 68/181 (37%), Gaps = 20/181 (11%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSM 430
           SL   + IH  ++      +P     +I+MY        ++ V  R+ P +     WN +
Sbjct: 41  SLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQL 97

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I      G     L+LY  M+  G  P   TF  +L AC  +     G         VH 
Sbjct: 98  IRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCG-------ASVHA 150

Query: 491 ISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVK--PDVLVWQALLGACSIHGD 542
           +   +     V      V M GR G    AR   + M  +   D++ W +++ A    GD
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 543 S 543
           S
Sbjct: 211 S 211


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 327/610 (53%), Gaps = 12/610 (1%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L +   +  +L + A+E    +G  +H   +K            +     + NSL+  Y
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVK----------LGLSEDVRVNNSLVDMY 179

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  LFD    ++ VSWNTM+ G    G     F  F+        ++++ + 
Sbjct: 180 SKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTV 239

Query: 160 TIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
             IL AC + S+L  + K +H      G++ +  V N  + +Y KCG      +VF  M 
Sbjct: 240 LNILPACLEISQLRSL-KELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSME 298

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            + V +W A+I G  QN    + L L+++M    + P+  T  S ++A + L++L  G++
Sbjct: 299 TKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKE 358

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG + +  L+ D  I  +L+ +Y  CG    A  +F+  EE   VS   ++ G++QNG 
Sbjct: 359 VHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGL 418

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E+A+ LF K+V  G +     V +VLG     ++L LGK+ H   +K+    + FV   
Sbjct: 419 PEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACS 478

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
            I+MY+K G +++S  VF  +  ++  SWN++IAA+  HG+G +++EL+E M+  G  P 
Sbjct: 479 TIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPD 538

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             TF+ +L  CSH GLV +G+++   M   H I P+ EHYACV+DM+GRAG L +A   +
Sbjct: 539 GFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLV 598

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
             MP +PD  VW +LL  C   G+ E+G+  AEKL   +P +   Y+ ++N+Y+ SGRW 
Sbjct: 599 HEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWD 658

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           +  +  + +K++G+ K+ G SWIE+  +VHSFV  D + PQ+  +     +L + M   G
Sbjct: 659 DVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIG 718

Query: 639 YVPNKRFILH 648
           Y PN   +LH
Sbjct: 719 YKPNTSAVLH 728



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 232/463 (50%), Gaps = 18/463 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL--E 148
           + N+L++ Y K   +  AVK+F  MP+R+ VSWN+++SGF  NG     F      +  E
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D A+   +L  C R     +   IH L    G  E+V V N+L+  Y KCG  +
Sbjct: 128 EGLLP-DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMAC 267
             + +F +   +N ++W  +I GL       E   LF +M +   I  N +T L+ + AC
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             +  L   +++HG   +   Q D  + +  +  Y+KCG +  A ++F   E     S  
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G AQNG   +A+ L+++M  +G+  D   + ++L       SL  GK++H  +++ 
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               + F+   L+++Y  CG+   +  +F  M  ++SVSWN+MI+ ++++G    AL L+
Sbjct: 367 GLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILF 426

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-----EHYAC-V 501
            ++  +G +P+D+  +S+L ACS    +  G        E H  + +A        AC  
Sbjct: 427 RKLVSDGFQPSDIAVVSVLGACSQQSALRLG-------KETHCYALKALLMEDVFVACST 479

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +DM  ++G + E+RS  + +  K D+  W A++ A  +HGD E
Sbjct: 480 IDMYAKSGCIKESRSVFDGLKNK-DLASWNAIIAAYGVHGDGE 521



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 174/332 (52%), Gaps = 3/332 (0%)

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           +  D  +F  ++ AC  S    + ++IH +V   G   +V VGNALI  Y K G   +  
Sbjct: 27  FNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAV 86

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTYLSSVMACSG 269
           KVF  M VRN+++W ++ISG  +N   ++   + V+M  G   + P+  T ++ +  C+ 
Sbjct: 87  KVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAR 146

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              +  G +IHG+  KL L  D+ + ++L+DMYSKCG + +A  +F+     + VS   +
Sbjct: 147 EVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTM 206

Query: 330 LVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           + G    G+  EA  LF +M ++  IE++   V  +L      + L   K++H   I+  
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHG 266

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  +  V NG +  Y+KCG L  + +VF  M  +   SWN++I   A++G+  KAL LY 
Sbjct: 267 FQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYI 326

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           +M   G+ P   T  SLL A +H+  +  G E
Sbjct: 327 QMTYSGLVPDWFTIGSLLLASAHLKSLRYGKE 358



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 18/319 (5%)

Query: 234 QNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
           +N+LY + + +FVK+      N ++ T+   + AC+G      G  IHG++ K+ L  D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +AL+ MY K G V+ A ++F +    + VS   I+ GF++NGF ++   + V+M+  
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 353 GIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
              + P++ +   VL V   +  + +G +IH L +K   + +  VNN L++MYSKCG L 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSLLHAC 469
           ++  +F +   +N+VSWN+MI      G  F+A  L+ EM++ E +E  +VT L++L AC
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPV 523
             +         L+S+ E+H  S R   ++   V    V    + G+LI A      M  
Sbjct: 247 LEISQ-------LRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMET 299

Query: 524 KPDVLVWQALLGACSIHGD 542
           K  V  W AL+G C+ +GD
Sbjct: 300 KT-VNSWNALIGGCAQNGD 317


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 307/542 (56%), Gaps = 2/542 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y+KC +M  A+++FD++   D V+W++MVSGF +NG       FF+R +   
Sbjct: 79  VGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMAS 138

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ +   ++SAC +   S + + +H  V   G+  ++++ N+L+  Y K  +    
Sbjct: 139 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEA 198

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F  +  ++VI+W+ VI+  VQN    E L +F  M      PN  T L  + AC+  
Sbjct: 199 VNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAA 258

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +GR+ H +  +  L++++ + +AL+DMY KC S E+A+ +F      D VS   ++
Sbjct: 259 HDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALI 318

Query: 331 VGFAQNGFEEEAMQLF-VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
            GF  NG    +++ F + +++     D  ++  VLG       L   K  HS +IK  F
Sbjct: 319 SGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGF 378

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SNPF+   L+ +YS+CG L ++ KVF+ +A +++V W S+I  +  HG G KALE +  
Sbjct: 379 DSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNH 438

Query: 450 M-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           M K   V+P +VTFLS+L ACSH GL+++G+   K M   +R++P  EHYA +VD++GR 
Sbjct: 439 MVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRV 498

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L  A    +RMP  P   +   LLGAC IH + EM +  A+KLF  + +    Y+LM+
Sbjct: 499 GDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMS 558

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y   G W+   K    +K+ G+ K    S IEI ++VH FV DD++HP+ + ++G+L 
Sbjct: 559 NVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLK 618

Query: 629 EL 630
           EL
Sbjct: 619 EL 620



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 220/471 (46%), Gaps = 22/471 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFD---MGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           M  R    WNT++    R  +++     F    R  E    + D  +  + L AC     
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEE----KPDNFTLPVALKACGELRE 56

Query: 172 SLVSKMIHCLVYLCGYEEEVT------VGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
               +MIH  V     +++VT      VG++LI  Y KCG      ++F E+   +++TW
Sbjct: 57  VNYGEMIHGFV-----KKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTW 111

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           ++++SG  +N    + ++ F +M +   + P+ +T ++ V AC+ L     GR +HG + 
Sbjct: 112 SSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVI 171

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           +    +DL + ++L++ Y+K  + ++A  +F+   E D +S + ++  + QNG   EA+ 
Sbjct: 172 RRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALL 231

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F  M+  G E +   V  VL        L  G++ H L I+    +   V+  L++MY 
Sbjct: 232 VFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYM 291

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFL 463
           KC   E++  VFSR+  ++ VSW ++I+ F  +G   +++E +  M LE    P  +  +
Sbjct: 292 KCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMV 351

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L +CS +G + +   F  S    +         A +V++  R G L  A      + +
Sbjct: 352 KVLGSCSELGFLEQAKCF-HSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL 410

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           K D +VW +L+    IHG           +  +    P     ++ + +CS
Sbjct: 411 K-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS 460



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   I  SL+  Y +C  + NA K+F+ + ++DTV W ++++G+  +G+       
Sbjct: 376 YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALET 435

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSEL 171
           F   ++    + ++ +F  ILSAC  + L
Sbjct: 436 FNHMVKSSEVKPNEVTFLSILSACSHAGL 464


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 307/542 (56%), Gaps = 2/542 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y+KC +M  A+++FD++   D V+W++MVSGF +NG       FF+R +   
Sbjct: 98  VGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMAS 157

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ +   ++SAC +   S + + +H  V   G+  ++++ N+L+  Y K  +    
Sbjct: 158 DVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEA 217

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F  +  ++VI+W+ VI+  VQN    E L +F  M      PN  T L  + AC+  
Sbjct: 218 VNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAA 277

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +GR+ H +  +  L++++ + +AL+DMY KC S E+A+ +F      D VS   ++
Sbjct: 278 HDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALI 337

Query: 331 VGFAQNGFEEEAMQLF-VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
            GF  NG    +++ F + +++     D  ++  VLG       L   K  HS +IK  F
Sbjct: 338 SGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGF 397

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SNPF+   L+ +YS+CG L ++ KVF+ +A +++V W S+I  +  HG G KALE +  
Sbjct: 398 DSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNH 457

Query: 450 M-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           M K   V+P +VTFLS+L ACSH GL+++G+   K M   +R++P  EHYA +VD++GR 
Sbjct: 458 MVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRV 517

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L  A    +RMP  P   +   LLGAC IH + EM +  A+KLF  + +    Y+LM+
Sbjct: 518 GDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMS 577

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y   G W+   K    +K+ G+ K    S IEI ++VH FV DD++HP+ + ++G+L 
Sbjct: 578 NVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLK 637

Query: 629 EL 630
           EL
Sbjct: 638 EL 639



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 229/490 (46%), Gaps = 22/490 (4%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD---MGFGFFKRSLELGFY 152
           + F  K     +A ++F +M  R    WNT++    R  +++     F    R  E    
Sbjct: 1   MGFCRKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEE---- 56

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT------VGNALITSYFKCGS 206
           + D  +  + L AC         +MIH  V     +++VT      VG++LI  Y KCG 
Sbjct: 57  KPDNFTLPVALKACGELREVNYGEMIHGFV-----KKDVTLGSDLYVGSSLIYMYIKCGR 111

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVM 265
                ++F E+   +++TW++++SG  +N    + ++ F +M +   + P+ +T ++ V 
Sbjct: 112 MIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVS 171

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ L     GR +HG + +    +DL + ++L++ Y+K  + ++A  +F+   E D +S
Sbjct: 172 ACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVIS 231

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            + ++  + QNG   EA+ +F  M+  G E +   V  VL        L  G++ H L I
Sbjct: 232 WSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAI 291

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +    +   V+  L++MY KC   E++  VFSR+  ++ VSW ++I+ F  +G   +++E
Sbjct: 292 RKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIE 351

Query: 446 LYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            +  M LE    P  +  + +L +CS +G + +   F  S    +         A +V++
Sbjct: 352 EFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCF-HSYVIKYGFDSNPFIGASLVEL 410

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
             R G L  A      + +K D +VW +L+    IHG           +  +    P   
Sbjct: 411 YSRCGSLGNASKVFNGIALK-DTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEV 469

Query: 565 ILMANIYSCS 574
             ++ + +CS
Sbjct: 470 TFLSILSACS 479



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 47/89 (52%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   I  SL+  Y +C  + NA K+F+ + ++DTV W ++++G+  +G+       
Sbjct: 395 YGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALET 454

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSEL 171
           F   ++    + ++ +F  ILSAC  + L
Sbjct: 455 FNHMVKSSEVKPNEVTFLSILSACSHAGL 483


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 327/603 (54%), Gaps = 17/603 (2%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
            +LS +       LG  +HA  IK+ F P        VP    + NSL++ Y K   +  A
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPV-------VP----VSNSLMNMYSKAGVVYAA 948

Query: 109  VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-- 166
             K F + P  D +SWNTM+S + +N         F+  L  G  + DQ +   +L AC  
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACST 1007

Query: 167  -DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
             D  E   +   +H     CG   +  V  ALI  Y K G       +       ++ +W
Sbjct: 1008 GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASW 1067

Query: 226  TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             A++ G +++    + L+ F  MH   I  + +T  +++ A   L  L +G+QI     K
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK 1127

Query: 286  LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
            L   +DL + S ++DMY KCG + +A ++F      D V+ T ++ G+ +NG E+ A+ +
Sbjct: 1128 LGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSV 1187

Query: 346  FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +  M  +G++ D    + ++      T+L  GKQIH+ ++K D++ + FV   L++MY K
Sbjct: 1188 YHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCK 1247

Query: 406  CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            CG ++D+ +VF +M  R  V WN+M+   A+HG+  +AL L+  M+  G++P  VTF+ +
Sbjct: 1248 CGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGV 1307

Query: 466  LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
            L ACSH GL ++  ++  +M + + I+P  EHY+C+VD +GRAG + EA + I  MP K 
Sbjct: 1308 LSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKA 1367

Query: 526  DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
               +++ALLGAC   GD+E  K  A+KL    P   + Y+L++NIY+ S +W +   A  
Sbjct: 1368 SASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARN 1427

Query: 586  RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG-YVPNKR 644
             MK   V K+ G SWI+++ +VH FVVDD+ HPQA  I+  + +L++ + +EG YVP+  
Sbjct: 1428 MMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTD 1487

Query: 645  FIL 647
            F L
Sbjct: 1488 FTL 1490



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 204/456 (44%), Gaps = 44/456 (9%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-----GFGFFKR 145
            + N+L++ Y KC  + +A ++FD    RD V+WN++++ + +  +        GF  F  
Sbjct: 648  LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL 707

Query: 146  SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
              E GF  + + +   +L  C  S    VS+ +H      G+E ++ V  AL+  Y K G
Sbjct: 708  LREFGF-SITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766

Query: 206  SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 R +F +M  R+ + W  ++   V+N   +E L+ F   H     P+  + L  V+
Sbjct: 767  LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD-FSNLHCVI 825

Query: 266  ACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
               G+ + +   R+ H    K                         A ++F F +  +  
Sbjct: 826  G--GVNSDVSNNRKRHAEQVKAY-----------------------AMKMFPFDQGSNIF 860

Query: 325  SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            +    L  F   G    A+  F  ++++ I  D   +  +L        L LG+QIH+L+
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 385  IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            IKS F     V+N L+NMYSK G +  + K F      + +SWN+MI+++A++    +A+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 445  ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHY-- 498
              + ++  +G++P   T  S+L ACS         E+    ++VH  + +     + +  
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACS----TGDEGEYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 499  ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
              ++D+  + G + EA  F+       D+  W A++
Sbjct: 1037 TALIDLYSKGGKMDEAE-FLLHGKYDFDLASWNAIM 1071



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 202/474 (42%), Gaps = 33/474 (6%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +  +L++ Y K   +  A  LFD MP RD V WN M+  ++ N   D    FF       
Sbjct: 754  VSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFF------- 806

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                         SA  RS        +HC++   G   +V+          K    +  
Sbjct: 807  -------------SAFHRSGFXPDFSNLHCVI--GGVNSDVSNNRKRHAEQVK----AYA 847

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             K+F   +  N+  W   ++  +        +  F  +    I  +S+T +  + A  G 
Sbjct: 848  MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGA 907

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
              L  G QIH ++ K +    + + ++LM+MYSK G V  A + F  + ELD +S   ++
Sbjct: 908  DDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMI 967

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---LGLGKQIHSLIIKS 387
              +AQN  E EA+  F  +++ G++ D   +++VL             LG Q+H   IK 
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 388  DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               ++ FV+  LI++YSK G ++++  +       +  SWN+++  + +     KALE +
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
              M   G+   ++T  + + A   +  + +G +      ++   +      + V+DM  +
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLG-FNNDLWVSSGVLDMYIK 1146

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPD 559
             G +  A      +  +PD + W  ++     +GD +  +  Y   ++   QPD
Sbjct: 1147 CGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPD 1199



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 188/424 (44%), Gaps = 50/424 (11%)

Query: 164  SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            SA   ++L L  K  H  +   G   +  + N LIT Y KCGS  S R+VF +   R+++
Sbjct: 620  SAIAMADLKL-GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 224  TWTAVISGLVQ--NQLYE---EGLKLFVKMHLGLINPN--SLTYLSSVMAC-----SGLQ 271
            TW ++++   Q  +  YE   EG +LF     GL+     S+T L+          SG  
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLF-----GLLREFGFSITRLTLAPLLKLCLLSGFV 733

Query: 272  ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
             + E   +HG   K+  + DL +  AL+++Y K G V  A  +F+   E D V   V+L 
Sbjct: 734  QVSE--TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLK 791

Query: 332  GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             + +N F++EA++ F    ++G   D + +  V+G  GV++ +   ++ H+  +K+    
Sbjct: 792  AYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG--GVNSDVSNNRKRHAEQVKA---- 845

Query: 392  NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
                                ++K+F      N  +WN  +  F   G    A++ ++ + 
Sbjct: 846  -------------------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 452  LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
               +    VT + +L A      ++ G E + ++      +P       +++M  +AG++
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVV 945

Query: 512  IEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
              A ++FI    +  D++ W  ++ + +   + EM      +  L     P  + L + +
Sbjct: 946  YAAEKTFINSPEL--DLISWNTMISSYA-QNNLEMEAICTFRDLLRDGLKPDQFTLASVL 1002

Query: 571  YSCS 574
             +CS
Sbjct: 1003 RACS 1006


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 321/595 (53%), Gaps = 40/595 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL-- 147
           V  NSLLS   +   +R+  +LF  +P RD VS+N +++GF R G      G +   L  
Sbjct: 78  VTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRD 137

Query: 148 ELGFY--QLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           E G    ++  +   ++ SA  DR+    + + +HC +   G+      G+ L+  Y K 
Sbjct: 138 EAGVRPSRITMSGVVMVASALGDRA----LGRQVHCQILRLGFGAYAFTGSPLVDMYAKV 193

Query: 205 GSSSSGRKVFGEMRVRNV-------------------------------ITWTAVISGLV 233
           G     R+VF EM  +NV                               ITWT +++GL 
Sbjct: 194 GPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           QN L  E L +F +M    +  +  T+ S + AC  L AL EG+QIH  + +   + ++ 
Sbjct: 254 QNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVF 313

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + SAL+DMYSKC SV  A  +F      + +S T ++VG+ QNG  EEA+++F +M + G
Sbjct: 314 VGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDG 373

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           I+ D   + +V+       SL  G Q H L + S       V+N L+ +Y KCG +ED+ 
Sbjct: 374 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAH 433

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           ++F  M+  + VSW +++  +A+ G   + ++L+E+M  +GV+P  VTF+ +L ACS  G
Sbjct: 434 RLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV+KG  +  SM + H I P  +HY C++D+  R+G L +A  FI++MP  PD   W  L
Sbjct: 494 LVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATL 553

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           L AC + GD E+GK+AAE L    P +PA Y+L+ ++++  G W + AK  + M++  V 
Sbjct: 554 LSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVK 613

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           KE G SWI+ + +VH F  DD+ HP + TI+  L  L   M++EGY P+   +LH
Sbjct: 614 KEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLH 668



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/419 (30%), Positives = 209/419 (49%), Gaps = 21/419 (5%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           + F+  + +NV       V+ N++++  L+C  +  A  LF+ +  RD+++W TMV+G  
Sbjct: 201 RVFDEMEGKNV-------VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLT 253

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           +NG        F+R    G   +DQ +F  IL+AC         K IH  +    YE+ V
Sbjct: 254 QNGLESEALDVFRRMRAEGV-GIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNV 312

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            VG+AL+  Y KC S      VF  M  +N+I+WTA+I G  QN   EE +++F +M   
Sbjct: 313 FVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRD 372

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            I P+  T  S + +C+ L +L EG Q H +     L+  + + +AL+ +Y KCGS+EDA
Sbjct: 373 GIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDA 432

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     D VS T +++G+AQ G  +E + LF KM+  G++ D      VL      
Sbjct: 433 HRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRS 492

Query: 372 TSLGLGKQ-IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWN 428
             +  G+   HS+    D          +I++YS+ G L+ + +   +M PR  ++  W 
Sbjct: 493 GLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQM-PRCPDAFGWA 551

Query: 429 SMIAAFARHGN---GFKALELYEEMKLEGVEPTDVTFLSLLHAC----SHVGLVNKGME 480
           ++++A    G+   G  A E    +KL+   P     L  +HA     + V  + +GM 
Sbjct: 552 TLLSACRLRGDMEIGKWAAE--NLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMR 608



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 212/493 (43%), Gaps = 101/493 (20%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM------ 248
           N L+T+Y   G     R+VF  M  RN++T  +++S L +  L  +  +LF  +      
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 249 ---------------------HLGL------INPNSLTYLSSVMACSGLQALCEGRQIHG 281
                                ++ L      + P+ +T    VM  S L     GRQ+H 
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHC 169

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQI--------------------------- 314
            + +L   +     S L+DMY+K G + DA ++                           
Sbjct: 170 QILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAE 229

Query: 315 ----FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
               FE  EE D ++ T ++ G  QNG E EA+ +F +M   G+ ID     ++L   G 
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             +L  GKQIH+ I ++ +  N FV + L++MYSKC  +  +  VF RM  +N +SW +M
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAM 349

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  + ++G G +A+ ++ EM+ +G++P D T  S++ +C+++  + +G +F   +  V  
Sbjct: 350 IVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQF-HCLALVSG 408

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMP---------------------------- 522
           + P       +V + G+ G + +A    + M                             
Sbjct: 409 LRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFE 468

Query: 523 ------VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCS 574
                 VKPD + +  +L ACS  G  + G+     +       P    Y  M ++YS S
Sbjct: 469 KMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRS 528

Query: 575 GRWKERAKAIKRM 587
           G  K+  + IK+M
Sbjct: 529 GWLKQAEEFIKQM 541


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/603 (33%), Positives = 327/603 (54%), Gaps = 17/603 (2%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
            +LS +       LG  +HA  IK+ F P        VP    + NSL++ Y K   +  A
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPV-------VP----VSNSLMNMYSKAGVVYAA 948

Query: 109  VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-- 166
             K F + P  D +SWNTM+S + +N         F+  L  G  + DQ +   +L AC  
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGL-KPDQFTLASVLRACST 1007

Query: 167  -DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
             D  E   +   +H     CG   +  V  ALI  Y K G       +       ++ +W
Sbjct: 1008 GDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASW 1067

Query: 226  TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
             A++ G +++    + L+ F  MH   I  + +T  +++ A   L  L +G+QI     K
Sbjct: 1068 NAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIK 1127

Query: 286  LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
            L   +DL + S ++DMY KCG + +A ++F      D V+ T ++ G+ +NG E+ A+ +
Sbjct: 1128 LGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSV 1187

Query: 346  FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +  M  +G++ D    + ++      T+L  GKQIH+ ++K D++ + FV   L++MY K
Sbjct: 1188 YHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCK 1247

Query: 406  CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            CG ++D+ +VF +M  R  V WN+M+   A+HG+  +AL L+  M+  G++P  VTF+ +
Sbjct: 1248 CGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGV 1307

Query: 466  LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
            L ACSH GL ++  ++  +M + + I+P  EHY+C+VD +GRAG + EA + I  MP K 
Sbjct: 1308 LSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKA 1367

Query: 526  DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
               +++ALLGAC   GD+E  K  A+KL    P   + Y+L++NIY+ S +W +   A  
Sbjct: 1368 SASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARN 1427

Query: 586  RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG-YVPNKR 644
             MK   V K+ G SWI+++ +VH FVVDD+ HPQA  I+  + +L++ + +EG YVP+  
Sbjct: 1428 MMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTD 1487

Query: 645  FIL 647
            F L
Sbjct: 1488 FTL 1490



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 204/456 (44%), Gaps = 44/456 (9%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-----GFGFFKR 145
            + N+L++ Y KC  + +A ++FD    RD V+WN++++ + +  +        GF  F  
Sbjct: 648  LTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGL 707

Query: 146  SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
              E GF  + + +   +L  C  S    VS+ +H      G+E ++ V  AL+  Y K G
Sbjct: 708  LREFGF-SITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYG 766

Query: 206  SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 R +F +M  R+ + W  ++   V+N   +E L+ F   H     P+  + L  V+
Sbjct: 767  LVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD-FSNLHCVI 825

Query: 266  ACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
               G+ + +   R+ H    K                         A ++F F +  +  
Sbjct: 826  G--GVNSDVSNNRKRHAEQVKAY-----------------------AMKMFPFDQGSNIF 860

Query: 325  SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            +    L  F   G    A+  F  ++++ I  D   +  +L        L LG+QIH+L+
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 385  IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            IKS F     V+N L+NMYSK G +  + K F      + +SWN+MI+++A++    +A+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 445  ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHY-- 498
              + ++  +G++P   T  S+L ACS         E+    ++VH  + +     + +  
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACS----TGDEGEYFTLGSQVHVYAIKCGIINDSFVS 1036

Query: 499  ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
              ++D+  + G + EA  F+       D+  W A++
Sbjct: 1037 TALIDLYSKGGKMDEAE-FLLHGKYDFDLASWNAIM 1071



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 203/474 (42%), Gaps = 33/474 (6%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +  +L++ Y K   +  A  LFD MP RD V WN M+  ++ N   D    FF      G
Sbjct: 754  VSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG 813

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            F+              D S L       HC++   G   +V+          K    +  
Sbjct: 814  FFP-------------DFSNL-------HCVI--GGVNSDVSNNRKRHAEQVK----AYA 847

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             K+F   +  N+  W   ++  +        +  F  +    I  +S+T +  + A  G 
Sbjct: 848  MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGA 907

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
              L  G QIH ++ K +    + + ++LM+MYSK G V  A + F  + ELD +S   ++
Sbjct: 908  DDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMI 967

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---LGLGKQIHSLIIKS 387
              +AQN  E EA+  F  +++ G++ D   +++VL             LG Q+H   IK 
Sbjct: 968  SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKC 1027

Query: 388  DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               ++ FV+  LI++YSK G ++++  +       +  SWN+++  + +     KALE +
Sbjct: 1028 GIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHF 1087

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
              M   G+   ++T  + + A   +  + +G +      ++   +      + V+DM  +
Sbjct: 1088 SLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLG-FNNDLWVSSGVLDMYIK 1146

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPD 559
             G +  A      +  +PD + W  ++     +GD +  +  Y   ++   QPD
Sbjct: 1147 CGDMPNALELFGEIS-RPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPD 1199



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 188/424 (44%), Gaps = 50/424 (11%)

Query: 164  SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            SA   ++L L  K  H  +   G   +  + N LIT Y KCGS  S R+VF +   R+++
Sbjct: 620  SAIAMADLKL-GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 224  TWTAVISGLVQ--NQLYE---EGLKLFVKMHLGLINPN--SLTYLSSVMAC-----SGLQ 271
            TW ++++   Q  +  YE   EG +LF     GL+     S+T L+          SG  
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLF-----GLLREFGFSITRLTLAPLLKLCLLSGFV 733

Query: 272  ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
             + E   +HG   K+  + DL +  AL+++Y K G V  A  +F+   E D V   V+L 
Sbjct: 734  QVSE--TVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLK 791

Query: 332  GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             + +N F++EA++ F    ++G   D + +  V+G  GV++ +   ++ H+  +K+    
Sbjct: 792  AYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIG--GVNSDVSNNRKRHAEQVKA---- 845

Query: 392  NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
                                ++K+F      N  +WN  +  F   G    A++ ++ + 
Sbjct: 846  -------------------YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLL 886

Query: 452  LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
               +    VT + +L A      ++ G E + ++      +P       +++M  +AG++
Sbjct: 887  RSTIGHDSVTLVIILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVV 945

Query: 512  IEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
              A ++FI    +  D++ W  ++ + +   + EM      +  L     P  + L + +
Sbjct: 946  YAAEKTFINSPEL--DLISWNTMISSYA-QNNLEMEAICTFRDLLRDGLKPDQFTLASVL 1002

Query: 571  YSCS 574
             +CS
Sbjct: 1003 RACS 1006


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 313/559 (55%), Gaps = 1/559 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T I  +L+  Y     +  A ++FD++  +D VSW  M++ +  N  F     FF +   
Sbjct: 81  TFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRV 140

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            GF + +  +F  +L AC   +     K +HC V    YE ++ VG  L+  Y +CG + 
Sbjct: 141 AGF-KPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDND 199

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              + FG+M   +VI W+ +IS   Q+   E+ L++F +M    + PN  T+ S + A +
Sbjct: 200 DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +++L   + IHG   K  L +D+ + +ALM  Y+KCG +E + ++FE   + + VS   
Sbjct: 260 DIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNT 319

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+V + Q G  E A+ LF  M++  ++      S++L       +L LG Q+H L  K+ 
Sbjct: 320 IIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI 379

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +  +  V N LI+MY+KCG ++D+  +F  +  R+ VSWN++I  ++ HG G +A++++ 
Sbjct: 380 YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFN 439

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK    +P ++TF+ +L ACS+ G +++G ++  SM + + I P  EHY C+V ++GR+
Sbjct: 440 LMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRS 499

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FIE +P +P V++W+ALLGAC IH D E+G+ +A+++   +P   A ++L++
Sbjct: 500 GNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLS 559

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ + RW   A   K MK  GV KE G+SWIE +  VH F V D  H     I+G+L 
Sbjct: 560 NIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLE 619

Query: 629 ELLRLMIDEGYVPNKRFIL 647
            L       GY P    +L
Sbjct: 620 FLNMKTRKAGYSPQLNAVL 638



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 260/483 (53%), Gaps = 10/483 (2%)

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           +FD+MP R+TVS+ T++ G+ ++ +F   F  F R    G ++L+   FT +L      E
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEG-HELNPFVFTTVLKLLVSME 60

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
            + + +++H  V   GY     +G ALI +Y   G  S  R+VF E+  +++++WT +I+
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
              +N  + E L+ F +M +    PN+ T+   + AC GLQ    G+ +H  + K   + 
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           DL +   L+++Y++CG  +DAW+ F    + D +  + ++  FAQ+G  E+A+++F +M 
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           +A +  +    S+VL       SL L K IH   +K+  +++ FV+N L+  Y+KCG +E
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIE 300

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            S+++F  ++ RN VSWN++I ++ + G+G +AL L+  M    V+ T+VT+ S+L AC+
Sbjct: 301 QSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            +  +  G++ +  +T              ++DM  + G + +AR   + + ++ D + W
Sbjct: 361 TLAALELGLQ-VHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR-DKVSW 418

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP----YILMANIYSCSGRWKERAKAIKR 586
            A++   S+HG   +G  A +   L +     P    ++ + +  S +GR  E  +    
Sbjct: 419 NAIICGYSMHG---LGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTS 475

Query: 587 MKE 589
           MK+
Sbjct: 476 MKQ 478


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 335/635 (52%), Gaps = 46/635 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L+   +   + LG  +H   +K            + +   I N+L+  Y KC  +   +
Sbjct: 202 ILTACIRNMDYQLGSQVHGIVVK----------LGLLSCVFICNALMGLYCKCGFLDLVL 251

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LF++MP RD  SWNT++S  ++  ++D  F +F+        ++D  S + +L+AC  S
Sbjct: 252 RLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGS 311

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT--- 226
              +  + +H L    G E  ++V ++LI  Y KCGS++    +F  M +R+VITWT   
Sbjct: 312 VKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMI 371

Query: 227 ----------------------------AVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
                                       AV++GL +N      L+LF++M    +  +  
Sbjct: 372 TSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDC 431

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EF 317
           T  S + AC  L++    +QI G + K  + S+ CIE+AL+DMY++CG +EDA +IF + 
Sbjct: 432 TLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQR 491

Query: 318 AEELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLG 375
           + E D  +M T ++ G+A+NG   EA+ LF      G I +D  M +++L + G      
Sbjct: 492 SLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHE 551

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           +GKQ+H   +KS   +   V N  ++MYSKC +++D+++VF+ M  ++ VSWN ++A   
Sbjct: 552 MGKQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHV 611

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VGLVNKGMEFLKSMTEVHRISP 493
            H  G KAL ++++M+  G++P  +TF  ++ A  H  + LV+       SM   H I P
Sbjct: 612 LHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKP 671

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             EHYA  + ++GR GLL EA   I  MP++PDV VW+ALL +C I+ +  + K AA  +
Sbjct: 672 TLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNI 731

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P  P  YIL +N+YS SGRW    K  + M+E G  K    SWI  E ++HSF   
Sbjct: 732 LAVEPKDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYAR 791

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ HPQ   I+  L  L+   +  GYVP+  F+L 
Sbjct: 792 DRSHPQGKDIYSGLEILILECLKVGYVPDTSFVLQ 826



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 148/550 (26%), Positives = 258/550 (46%), Gaps = 56/550 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL +S + G   L  ++HA F+K  E               + N+L+S YLK   +R+A 
Sbjct: 103 LLRLSTRYGDPDLARAVHAQFLKLEEDI------------FLGNALISAYLKLGLVRDAD 150

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F  +   + VS+  ++SGF ++   D     F   L+ G  + ++ +F  IL+AC R+
Sbjct: 151 KVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGI-EPNEYTFVAILTACIRN 209

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               +   +H +V   G    V + NAL+  Y KCG      ++F EM  R++ +W  VI
Sbjct: 210 MDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVI 269

Query: 230 SGLVQNQLYEEGLKLFVKMHL--GL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           S LV+   Y+E    F  M L  GL ++  SL+ L  + AC+G     +G+Q+H +  K+
Sbjct: 270 SSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTL--LTACAGSVKPMKGQQLHALALKV 327

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT------------------- 327
            L+S L + S+L+  Y+KCGS  D   +FE     D ++ T                   
Sbjct: 328 GLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVF 387

Query: 328 ------------VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                        +L G ++N     A++LF++M++ G+EI    +++++   G+  S  
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAA 433
           + +QI   ++K    SN  +   L++MY++CG +ED+ K+F + +  N  +    SMI  
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICG 507

Query: 434 FARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           +AR+G   +A+ L+   + EG    D V   S+L  C  +G    G +      +   I+
Sbjct: 508 YARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLIT 567

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAA 550
                 A  V M  +   + +A      M ++ D++ W  L+    +H  GD  +G +  
Sbjct: 568 ETGVGNA-TVSMYSKCWNMDDAVRVFNTMNMQ-DIVSWNGLVAGHVLHWQGDKALGIWKK 625

Query: 551 EKLFLAQPDS 560
            +    +PDS
Sbjct: 626 MEKAGIKPDS 635


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 319/560 (56%), Gaps = 4/560 (0%)

Query: 89   TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            T + NSL++ Y K   + +A  LFD++   D VSWN+M++G + NG    G   F + L 
Sbjct: 505  TAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLI 564

Query: 149  LGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            LG  ++D  +   +L A  +   LSL  + +H       + EEV   N L+  Y KCG+ 
Sbjct: 565  LGV-EVDLTTLVSVLVAWANIGNLSL-GRALHGFGVKACFSEEVVFSNTLLDMYSKCGNL 622

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            +   +VF +M    +++WT+ I+  V+  LY + + LF +M    + P+  T  S V AC
Sbjct: 623  NGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHAC 682

Query: 268  SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            +   +L +GR +H  + K  + S+L + +AL++MY+KCGSVE+A  +F      D VS  
Sbjct: 683  ACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWN 742

Query: 328  VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             ++ G++QN    EA++LF+ M K     D  M   +    G+  +L  G++IH  I++ 
Sbjct: 743  TMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGL-AALDKGREIHGHILRR 801

Query: 388  DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + S+  V   L++MY+KCG L  +  +F  +  ++ +SW  MIA +  HG G +A+  +
Sbjct: 802  GYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTF 861

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             EM++ G+EP + +F  +L+ACSH GL+N+G +F  SM     + P+ EHYACVVD++ R
Sbjct: 862  NEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLAR 921

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
             G L +A  FIE MP+KPD  +W  LL  C IH D ++ +  AE +F  +PD+   Y+++
Sbjct: 922  MGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVL 981

Query: 568  ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            AN+Y+ + +W+E  K  KRM++ G  +  G SWIE+  + + FV  +  HPQA  I  +L
Sbjct: 982  ANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLL 1041

Query: 628  AELLRLMIDEGYVPNKRFIL 647
             +L   M +E Y    R++L
Sbjct: 1042 RKLTMQMQNEDYFSMFRYVL 1061



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 155/564 (27%), Positives = 279/564 (49%), Gaps = 23/564 (4%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           S + +L L++Y  +   L + A++     G  +H+  I      D            +  
Sbjct: 362 SKSYELGLNSYCSV---LQLCAEKKSLEDGKRVHSVIISNGISIDE----------ALGA 408

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
            L+  Y+ C  +    K+FD +       WN ++S + + G F      FK+  +LG   
Sbjct: 409 KLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG 468

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            +  +FT +L            K +H  V   G+     V N+LI +YFK G   S   +
Sbjct: 469 -NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 527

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F E+   +V++W ++I+G V N     GL++F++M +  +  +  T +S ++A + +  L
Sbjct: 528 FDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNL 587

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GR +HG   K     ++   + L+DMYSKCG++  A ++F    +   VS T  +  +
Sbjct: 588 SLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAY 647

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            + G   +A+ LF +M   G+  D   V++++      +SL  G+ +HS +IK+   SN 
Sbjct: 648 VREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNL 707

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N LINMY+KCG +E++  VFS++  ++ VSWN+MI  ++++    +ALEL+ +M+ +
Sbjct: 708 PVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ 767

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLI 512
             +P D+T   +L AC+ +  ++KG E    +      S    H AC +VDM  + GLL+
Sbjct: 768 -FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALVDMYAKCGLLV 824

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
            A+   + +P K D++ W  ++    +H  G+  +  +   ++   +PD  + + ++ N 
Sbjct: 825 LAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDE-SSFSVILNA 882

Query: 571 YSCSGRWKERAKAIKRMK-EMGVD 593
            S SG   E  K    M+ E GV+
Sbjct: 883 CSHSGLLNEGWKFFNSMRNECGVE 906



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 210/420 (50%), Gaps = 7/420 (1%)

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           T + N  ++ F   G+         +S     Y+L   S+  +L  C   +     K +H
Sbjct: 336 TQNQNAKINKFCEMGDLRNAIELLTKSKS---YELGLNSYCSVLQLCAEKKSLEDGKRVH 392

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            ++   G   +  +G  L+  Y  CG    GRK+F ++    V  W  ++S   +   + 
Sbjct: 393 SVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFR 452

Query: 240 EGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E + LF KM  LG++  N  T+   +   + L  + E +++HG + KL   S+  + ++L
Sbjct: 453 ESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSL 511

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +  Y K G VE A  +F+   E D VS   ++ G   NGF    +++F++M+  G+E+D 
Sbjct: 512 IAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDL 571

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             + +VL  +    +L LG+ +H   +K+ F+     +N L++MYSKCG+L  + +VF +
Sbjct: 572 TTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 631

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M     VSW S IAA+ R G    A+ L++EM+ +GV P   T  S++HAC+    ++KG
Sbjct: 632 MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKG 691

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            + + S    + +         +++M  + G + EAR    ++PVK D++ W  ++G  S
Sbjct: 692 RD-VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGGYS 749


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/553 (37%), Positives = 300/553 (54%), Gaps = 54/553 (9%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + +SL++ Y K      A K+FD MP R++VSW TM+SG+          G F+  R  E
Sbjct: 145 VGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREE 204

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    ++  FT +LSA    EL    K IHC+    G    V+VGNAL+T Y KCGS  
Sbjct: 205 EG---ENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              + F     +N ITW+A+I+G  Q+   ++ LKLF  MHL  I P+  T++  + ACS
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A  EG+Q+H  L KL  +S + + +AL+DMY+KC S+ DA + F++ +E D V  T 
Sbjct: 322 DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTS 381

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+ QNG  E+A+ L+ +M   GI  +   +++VL       +L  GKQIH+  +K  
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F     + + L  MY+KCG L+D   VF RM  R+ +SWN+MI+  +++G G +ALEL+E
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+LEG +P  VTF+++L ACSH+GLV +G  + + M +   + PR EHYAC+VD++ RA
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRA 561

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  F E   +                                             
Sbjct: 562 GKLKEAIEFTESATID-------------------------------------------- 577

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
                 G W++  +  + MK  GV KE G SWIE++  VH FVV D+MHPQ   IH  L 
Sbjct: 578 -----HGMWEDVERVRRMMKLRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELR 632

Query: 629 ELLRLMIDEGYVP 641
           +L + M DEGY P
Sbjct: 633 QLSKQMKDEGYEP 645



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 192/362 (53%), Gaps = 16/362 (4%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG--LKLFVKM 248
           V + N+L+  Y KC      + VF  ++ ++V++W  +I+G  Q+        ++LF +M
Sbjct: 40  VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM 99

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
                 PN+ T+     A S L     GR  H +  K+    D+ + S+LM+MY K G  
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
            +A ++F+   E + VS   ++ G+A      EA+ LF  M +     +  + ++VL   
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
            +   +  GKQIH + +K+   S   V N L+ MY+KCG L+D+++ F   + +NS++W+
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           +MI   A+ G+  KAL+L+  M L G+ P++ TF+ +++ACS +G   +G        +V
Sbjct: 280 AMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEG-------KQV 332

Query: 489 H----RISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           H    ++   ++ Y    +VDM  +   +++AR   + +  +PD+++W +++G    +G+
Sbjct: 333 HDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ-EPDIVLWTSMIGGYVQNGE 391

Query: 543 SE 544
           +E
Sbjct: 392 NE 393


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/606 (33%), Positives = 331/606 (54%), Gaps = 49/606 (8%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLEL 149
           + N+L++ Y +C  + +A K+FD+MP+ D VSWN+++  + + G+  M    F K + E 
Sbjct: 164 VGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEF 223

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF + D  +   +L  C       + K  H         + + VGN L+  Y K G    
Sbjct: 224 GF-RPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDE 282

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-------------------- 249
              VF  M V++V++W A+++G  Q   +E+ ++LF +M                     
Sbjct: 283 ANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQ 342

Query: 250 -------LGL--------INPNSLTYLSSVMACSGLQALCEGRQIH--GILWKLALQS-- 290
                  LG+        I PN +T +S +  C+ + AL  G++IH   I + + L+   
Sbjct: 343 RGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNG 402

Query: 291 ---DLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNGFEEEAMQL 345
              +  + + L+DMY+KC  V+ A  +F+    +E D V+ TV++ G++Q+G   +A++L
Sbjct: 403 HGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALEL 462

Query: 346 FVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINM 402
             +M +   +  PN   +S  L       +L +GKQIH+  +++   + P FV+N LI+M
Sbjct: 463 LSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDM 522

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCGD+ D+  VF  M  +N V+W S++  +  HG G +AL ++EEM+  G +   VT 
Sbjct: 523 YAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTL 582

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L +L+ACSH G++++GME+   M     +SP  EHYAC+VD++GRAG L  A   IE MP
Sbjct: 583 LVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++P  +VW ALL  C IHG  E+G+YAA+K+     ++   Y L++N+Y+ +GRWK+  +
Sbjct: 643 MEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTR 702

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               M+  G+ K  G SW+E  K   +F V DK HP A  I+ VL++ ++ + D GYVP 
Sbjct: 703 IRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPE 762

Query: 643 KRFILH 648
             F LH
Sbjct: 763 TGFALH 768



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 149/570 (26%), Positives = 251/570 (44%), Gaps = 82/570 (14%)

Query: 47  ISRLLSI-SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF------- 98
           I RL+++ +A + H HL  SL ++      P        +    +I   LLSF       
Sbjct: 2   IRRLVTLRAAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNL 61

Query: 99  -------YLKCDQMRNAVKLFDDMPMRDT--VSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
                  Y+    + +AV L    P  D     WN+++  +  NG  +     F     L
Sbjct: 62  TSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSL 121

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +  D  +F  +  AC            H L  + G+   V VGNAL+  Y +CGS S 
Sbjct: 122 S-WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSD 180

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMAC 267
            RKVF EM V +V++W ++I    +    +  L++F KM    G   P+ +T ++ +  C
Sbjct: 181 ARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGF-RPDDITLVNVLPPC 239

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + +     G+Q HG      +  ++ + + L+DMY+K G +++A  +F      D VS  
Sbjct: 240 ASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWN 299

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEID------------------------------ 357
            ++ G++Q G  E+A++LF +M +  I++D                              
Sbjct: 300 AMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 358 ---PNMVSAVLGVFGVDT--SLGLGKQIHSLIIKS--DFTSN-----PFVNNGLINMYSK 405
              PN V+ +  + G  +  +L  GK+IH   IK   D   N       V N LI+MY+K
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAK 419

Query: 406 CGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--PTDVT 461
           C  ++ +  +F  ++P  R+ V+W  MI  +++HG+  KALEL  EM  E  +  P   T
Sbjct: 420 CKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFT 479

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEA 514
               L AC+ +  ++ G        ++H  + R +  A       C++DM  + G + +A
Sbjct: 480 ISCALVACASLAALSIG-------KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA 532

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           R   + M  K +V  W +L+    +HG  E
Sbjct: 533 RLVFDNMMEKNEV-TWTSLMTGYGMHGYGE 561



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 21/234 (8%)

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  +  NG   + +  F  M       D      V    G  +S+  G   H+L   + 
Sbjct: 98  LIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG 157

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F SN FV N L+ MYS+CG L D+ KVF  M   + VSWNS+I ++A+ G    ALE++ 
Sbjct: 158 FMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFS 217

Query: 449 EMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CV 501
           +M  E G  P D+T +++L  C+ VG  + G +F       H  +  +E         C+
Sbjct: 218 KMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF-------HGFAVTSEMIQNMFVGNCL 270

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLF 554
           VDM  + G++ EA +    MPVK DV+ W A++      G S++G++  A +LF
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVK-DVVSWNAMVA-----GYSQIGRFEDAVRLF 318



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   IS  L   A      +G  +HA  ++     + QN   VP    + N L+  Y KC
Sbjct: 476 NAFTISCALVACASLAALSIGKQIHAYALR-----NQQNA--VP--LFVSNCLIDMYAKC 526

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +A  +FD+M  ++ V+W ++++G+  +G  +   G F+    +GF +LD  +  ++
Sbjct: 527 GDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGF-KLDGVTLLVV 585

Query: 163 LSACDRS 169
           L AC  S
Sbjct: 586 LYACSHS 592


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/593 (36%), Positives = 323/593 (54%), Gaps = 46/593 (7%)

Query: 90  VIWNSLLSFYLK-CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           VI  ++L+ Y +    +  A+K F+ M  R+  +W+TM++     G  D     ++R   
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPV 319

Query: 149 LGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  + +    L+ C R  +  ++ + I         E  V   NALIT Y + G  
Sbjct: 320 KSIAC--RTALITGLAQCGRIDDARILFEQIP--------EPIVVSWNALITGYMQNGMV 369

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV-MA 266
           +  +++F +M  RN I+W  +I+G  QN   EE L L  ++H   + P SL+ L+S+  A
Sbjct: 370 NEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLP-SLSSLTSIFFA 428

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS + AL  G Q+H +  K+  Q +    +AL+ MY KC ++E A Q+F      D VS 
Sbjct: 429 CSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSW 488

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA---------VLGVF--------- 368
              L    QN   +EA   F  M+         ++SA          +G F         
Sbjct: 489 NSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548

Query: 369 ----------GVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                     GV  SLG   +G+QIH++ IK    S   V N LI+MY KCG   DS ++
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRI 607

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  R+  +WN++I  +A+HG G +A+++Y+ M+  GV P +VTF+ LL+ACSH GLV
Sbjct: 608 FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLV 667

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           ++G +F KSM++ + ++P  EHYAC+VD++GR G +  A  FI  MP++PD ++W ALLG
Sbjct: 668 DEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLG 727

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC IH ++E+GK AAEKLF  +P +   Y++++NIYS  G W E A+  K MK+ GV KE
Sbjct: 728 ACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE 787

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G SW +I+ ++HSFV  DK H Q + I   L EL  L+   GYVP+  F+LH
Sbjct: 788 PGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLH 840



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 226/480 (47%), Gaps = 47/480 (9%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN--VPNATVIWNSLLSFYLKCD 103
           D +R L  +   G+   G  L + + +     + + V++  +   TV WN+++S Y++  
Sbjct: 82  DAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL----------GFYQ 153
            +  A +LFD MP RD  SWN+M++G+  + +       F++  E           G+ +
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 154 L--------------------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           +                    DQ++F   LSA        V + +  L    G+E +V +
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 194 GNALITSYFKCGSS-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           G A++  Y +  S   +  K F  M  RN  TW+ +I+ L      +  + ++ +     
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER----- 316

Query: 253 INP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +P  S+   ++++  +GL A C       IL++   +  +   +AL+  Y + G V +A
Sbjct: 317 -DPVKSIACRTALI--TGL-AQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEA 372

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     + +S   ++ G+AQNG  EEA+ L  ++ ++G+    + ++++       
Sbjct: 373 KELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNI 432

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +L  G Q+HSL +K     N F  N LI MY KC ++E + +VFSRM  ++ VSWNS +
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           AA  ++    +A   ++ M    +   DV++ +++ A +H    N+ M   K+M   H +
Sbjct: 493 AALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 216/463 (46%), Gaps = 55/463 (11%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM---------------------GFGFFKRS 146
           A ++FD MP RD ++WN+M+S +  NG  D                      G+G   R 
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRV 112

Query: 147 LEL-----GFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
           LE      G  + +  ++  ++S      ++++  ++   +        +V+  N+++T 
Sbjct: 113 LEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP-----SRDVSSWNSMLTG 167

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y         R +F +M  RN+++WT +ISG  + + + +   +F KMH   + P+   +
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-AWQIFEFAE 319
            S++ A  GL  L     +  +  K   + D+ I +A++++YS+  SV D A + FE   
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E +  + + ++   +  G  + A+ ++ +     I     +++ +     +D +  L +Q
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I   I+ S         N LI  Y + G + ++ ++F +M  RN++SW  MIA +A++G 
Sbjct: 348 IPEPIVVS--------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA---- 495
             +AL L +E+   G+ P+  +  S+  ACS++  +  G       T+VH ++ +     
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-------TQVHSLAVKVGCQF 452

Query: 496 EHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             +AC  ++ M G+   +  AR    RM V  D++ W + L A
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E EV+  +A I    + G     R+VF  M  R++I W ++IS    N + +    L+  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQI-------HGILWKLAL-----QSDLCIE 295
           +  G +   ++     +     L  + E R++       + + W   +       D+ + 
Sbjct: 91  ISGGNMRTGAIL----LSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMA 146

Query: 296 SALMD-------------MYSKCGSVE--DAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             L D             +   C S++  DA  +FE   E + VS TV++ G+ +     
Sbjct: 147 RRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 341 EAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           +A  +F KM + G+  D  N  SA+  V G+  +L + + +  L +K+ F  +  +   +
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLG-NLDVLESLRVLALKTGFERDVVIGTAI 265

Query: 400 INMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +N+YS+    L+ +IK F  M  RN  +W++MIAA +  G    A+ +YE   ++ +   
Sbjct: 266 LNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI--- 322

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
                +L+   +  G ++      + + E     P    +  ++    + G++ EA+   
Sbjct: 323 -ACRTALITGLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELF 376

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           ++MP + + + W  ++   + +G SE
Sbjct: 377 DKMPFR-NTISWAGMIAGYAQNGRSE 401


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 313/556 (56%), Gaps = 2/556 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           +A+VI N+L+  Y KC ++  A KLFD M  R+ VSW TM++G+++N         F + 
Sbjct: 249 DASVI-NALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQL 307

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            + G +Q D  +   IL++C         + +H        E +  V N+LI  Y KC  
Sbjct: 308 SQEG-WQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEH 366

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            +  R VF  +   + I++ A+I G  +       + +F KM    + P+ LT++S +  
Sbjct: 367 LTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGV 426

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S   A+   +QIHG++ K     DL   S+L+D+YSK   VEDA  +F      D V  
Sbjct: 427 SSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIW 486

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G AQN   EEA++LF ++  +G+  +     A++ V     S+  G+Q H+ IIK
Sbjct: 487 NAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIK 546

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+  V+N LI+MY+KCG +++   +F     ++ + WNSMI+ +A+HG   +AL +
Sbjct: 547 AGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYV 606

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M   GVEP  VTF+ +L AC+H GLV++G+     M   + I P  EHYA VV++ G
Sbjct: 607 FRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFG 666

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+G L  A+ FIERMP++P   VW++LL AC + G+ E+G+YA E   LA P    P +L
Sbjct: 667 RSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVL 726

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           M+NIY+  G W +  K  + M   GV KE G SWIE+ K+VH+F+   + HP+AD I+ +
Sbjct: 727 MSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVHTFIARGREHPEADVIYSL 786

Query: 627 LAELLRLMIDEGYVPN 642
           L EL  ++ + GY+P+
Sbjct: 787 LDELTSILKNGGYLPD 802



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 245/460 (53%), Gaps = 7/460 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y K   +  A+ +FD +P+++ V+W  +++G+ + G+  +    F + + L 
Sbjct: 151 VGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGK-MGLD 209

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D+      +SAC         +  H   Y    E + +V NALI  Y KC   S  
Sbjct: 210 GVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLA 269

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RK+F  M  RN+++WT +I+G +QN    E + +F ++      P+     S + +C  L
Sbjct: 270 RKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSL 329

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            A+ +GRQ+H    K  L+SD  ++++L+DMY+KC  + +A  +FE   E D +S   ++
Sbjct: 330 AAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 389

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+++ G    A+ +F KM    ++  P    ++LGV    +++ L KQIH LI+KS  +
Sbjct: 390 EGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTS 449

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + +  + LI++YSK   +ED+  VF+ M  R+ V WN+MI   A++  G +A++L+ ++
Sbjct: 450 LDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQL 509

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRA 508
           ++ G+ P + TF++L+   S +  +  G +F     ++ +    ++H+    ++DM  + 
Sbjct: 510 QVSGLAPNEFTFVALVTVASTLVSMFHGQQF---HAQIIKAGADSDHHVSNALIDMYAKC 566

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           G + E R   E    K DV+ W +++   + HG +E   Y
Sbjct: 567 GFIKEGRLLFESTLGK-DVICWNSMISTYAQHGQAEEALY 605



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 137/449 (30%), Positives = 245/449 (54%), Gaps = 15/449 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMG--FGFFKRSLEL 149
           N LL  Y K  ++R+A +LFD MP ++ VSW + +S   ++G E D    F  F+R+   
Sbjct: 50  NLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRAS-- 107

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    ++      L AC +S      + +H +    G +  V VG ALI  Y K G   +
Sbjct: 108 GGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDA 167

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF  + V+N +TWTAVI+G  Q       L+LF KM L  + P+     S+V ACS 
Sbjct: 168 AMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSA 227

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  GRQ HG  +++A+++D  + +AL+D+Y KC  +  A ++F+  E  + VS T +
Sbjct: 228 LGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTM 287

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QN  + EAM +F ++ + G + D    +++L   G   ++  G+Q+H+  IK++ 
Sbjct: 288 IAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANL 347

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V N LI+MY+KC  L ++  VF  +A  +++S+N+MI  ++R G+   A++++ +
Sbjct: 348 ESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSK 407

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMV 505
           M+   ++P+ +TF+SLL   S    +    +     +KS T +   +  +     ++D+ 
Sbjct: 408 MRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSS-----LIDVY 462

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALL 534
            +  L+ +A++    M  + D+++W A++
Sbjct: 463 SKFSLVEDAKAVFNLMHNR-DMVIWNAMI 490



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 184/383 (48%), Gaps = 21/383 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IK           N+ +   + NSL+  Y KC+ +  A  +F+ +   D +S
Sbjct: 335 GRQVHAHAIKA----------NLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAIS 384

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +N M+ G+ R G+       F + +     +    +F  +L          +SK IH L+
Sbjct: 385 YNAMIEGYSRLGDLAGAIDVFSK-MRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLI 443

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   ++  G++LI  Y K       + VF  M  R+++ W A+I GL QN+  EE +
Sbjct: 444 VKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAV 503

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF ++ +  + PN  T+++ V   S L ++  G+Q H  + K    SD  + +AL+DMY
Sbjct: 504 KLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMY 563

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KCG +++   +FE     D +    ++  +AQ+G  EEA+ +F  M   G+E  PN V+
Sbjct: 564 AKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVE--PNYVT 621

Query: 363 AVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSR 418
            V GV       GL  +   H   +K+ +   P   +   ++N++ + G L  + +   R
Sbjct: 622 FV-GVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIER 680

Query: 419 MA--PRNSVSWNSMIAAFARHGN 439
           M   P  +V W S+++A    GN
Sbjct: 681 MPIEPAAAV-WRSLLSACHLFGN 702



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 149/307 (48%), Gaps = 19/307 (6%)

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           DL + + L+  YSK G V DA ++F+     + VS    +   AQ+G EE+A+ LF    
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 351 KAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           +A     PN  ++++ L       ++  G+Q+H + ++     N +V   LIN+Y+K G 
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           ++ ++ VF  +  +N V+W ++I  +++ G G  ALEL+ +M L+GV P      S + A
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPD 526
           CS +G +  G +   +    +RI+   +      ++D+  +   L  AR   + M  + +
Sbjct: 225 CSALGFLEGGRQ---THGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENR-N 280

Query: 527 VLVWQALLG-----ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER- 580
           ++ W  ++      +C     +   + + E     QPD  A   ++ +  S +  W+ R 
Sbjct: 281 LVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGW---QPDVFACASILNSCGSLAAIWQGRQ 337

Query: 581 --AKAIK 585
             A AIK
Sbjct: 338 VHAHAIK 344



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 21/205 (10%)

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+  + +    + F+ N L+  YSK G + D+ ++F RM  +N VSW S I+  A+HG  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 441 FKALELYEEMKLE--GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPR 494
             A+ L+   +    G  P +    S L AC+    V+ G        +VH    RI   
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQ-------QVHGVAVRIGLD 146

Query: 495 AEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
              Y    ++++  + G +  A    + +PVK  V  W A++   S  G   +      K
Sbjct: 147 GNVYVGTALINLYAKVGCIDAAMLVFDALPVKNPV-TWTAVITGYSQIGQGGVALELFGK 205

Query: 553 LFL--AQPDSPAPYILMANIYSCSG 575
           + L   +PD    ++L + + +CS 
Sbjct: 206 MGLDGVRPDR---FVLASAVSACSA 227


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/593 (36%), Positives = 323/593 (54%), Gaps = 46/593 (7%)

Query: 90  VIWNSLLSFYLK-CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           VI  ++L+ Y +    +  A+K F+ M  R+  +W+TM++     G  D     ++R   
Sbjct: 260 VIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPV 319

Query: 149 LGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  + +    L+ C R  +  ++ + I         E  V   NALIT Y + G  
Sbjct: 320 KSIAC--RTALITGLAQCGRIDDARILFEQIP--------EPIVVSWNALITGYMQNGMV 369

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV-MA 266
           +  +++F +M  RN I+W  +I+G  QN   EE L L  ++H   + P SL+ L+S+  A
Sbjct: 370 NEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLP-SLSSLTSIFFA 428

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS + AL  G Q+H +  K+  Q +    +AL+ MY KC ++E A Q+F      D VS 
Sbjct: 429 CSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSW 488

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA---------VLGVF--------- 368
              L    QN   +EA   F  M+         ++SA          +G F         
Sbjct: 489 NSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548

Query: 369 ----------GVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                     GV  SLG   +G+QIH++ IK    S   V N LI+MY KCG   DS ++
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCG-CADSRRI 607

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  R+  +WN++I  +A+HG G +A+++Y+ M+  GV P +VTF+ LL+ACSH GLV
Sbjct: 608 FDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLV 667

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           ++G +F KSM++ + ++P  EHYAC+VD++GR G +  A  FI  MP++PD ++W ALLG
Sbjct: 668 DEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLG 727

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC IH ++E+GK AAEKLF  +P +   Y++++NIYS  G W E A+  K MK+ GV KE
Sbjct: 728 ACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKE 787

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G SW +I+ ++HSFV  DK H Q + I   L EL  L+   GYVP+  F+LH
Sbjct: 788 PGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLH 840



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 226/480 (47%), Gaps = 47/480 (9%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN--VPNATVIWNSLLSFYLKCD 103
           D +R L  +   G+   G  L + + +     + + V++  +   TV WN+++S Y++  
Sbjct: 82  DAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL----------GFYQ 153
            +  A +LFD MP RD  SWN+M++G+  + +       F++  E           G+ +
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGR 201

Query: 154 L--------------------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           +                    DQ++F   LSA        V + +  L    G+E +V +
Sbjct: 202 IENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVI 261

Query: 194 GNALITSYFKCGSS-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           G A++  Y +  S   +  K F  M  RN  TW+ +I+ L      +  + ++ +     
Sbjct: 262 GTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYER----- 316

Query: 253 INP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +P  S+   ++++  +GL A C       IL++   +  +   +AL+  Y + G V +A
Sbjct: 317 -DPVKSIACRTALI--TGL-AQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEA 372

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     + +S   ++ G+AQNG  EEA+ L  ++ ++G+    + ++++       
Sbjct: 373 KELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNI 432

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +L  G Q+HSL +K     N F  N LI MY KC ++E + +VFSRM  ++ VSWNS +
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           AA  ++    +A   ++ M    +   DV++ +++ A +H    N+ M   K+M   H +
Sbjct: 493 AALVQNDLLDEARNTFDNM----LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL 548



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 216/463 (46%), Gaps = 55/463 (11%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM---------------------GFGFFKRS 146
           A ++FD MP RD ++WN+M+S +  NG  D                      G+G   R 
Sbjct: 53  AREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRV 112

Query: 147 LEL-----GFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
           LE      G  + +  ++  ++S      ++++  ++   +        +V+  N+++T 
Sbjct: 113 LEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMP-----SRDVSSWNSMLTG 167

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y         R +F +M  RN+++WT +ISG  + + + +   +F KMH   + P+   +
Sbjct: 168 YCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNF 227

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-AWQIFEFAE 319
            S++ A  GL  L     +  +  K   + D+ I +A++++YS+  SV D A + FE   
Sbjct: 228 ASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMI 287

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E +  + + ++   +  G  + A+ ++ +     I     +++ +     +D +  L +Q
Sbjct: 288 ERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ 347

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I   I+ S         N LI  Y + G + ++ ++F +M  RN++SW  MIA +A++G 
Sbjct: 348 IPEPIVVS--------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGR 399

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA---- 495
             +AL L +E+   G+ P+  +  S+  ACS++  +  G       T+VH ++ +     
Sbjct: 400 SEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETG-------TQVHSLAVKVGCQF 452

Query: 496 EHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             +AC  ++ M G+   +  AR    RM V  D++ W + L A
Sbjct: 453 NSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA 494



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E EV+  +A I    + G     R+VF  M  R++I W ++IS    N + +    L+  
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQI-------HGILWKLAL-----QSDLCIE 295
           +  G +   ++     +     L  + E R++       + + W   +       D+ + 
Sbjct: 91  ISGGNMRTGAIL----LSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMA 146

Query: 296 SALMD-------------MYSKCGSVE--DAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             L D             +   C S++  DA  +FE   E + VS TV++ G+ +     
Sbjct: 147 RRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHG 206

Query: 341 EAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           +A  +F KM + G+  D  N  SA+  V G+  +L + + +  L +K+ F  +  +   +
Sbjct: 207 KAWDIFCKMHREGLLPDQSNFASALSAVKGLG-NLDVLESLRVLALKTGFERDVVIGTAI 265

Query: 400 INMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +N+YS+    L+ +IK F  M  RN  +W++MIAA +  G    A+ +YE   ++ +   
Sbjct: 266 LNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI--- 322

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
                +L+   +  G ++      + + E     P    +  ++    + G++ EA+   
Sbjct: 323 -ACRTALITGLAQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQNGMVNEAKELF 376

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           ++MP + + + W  ++   + +G SE
Sbjct: 377 DKMPFR-NTISWAGMIAGYAQNGRSE 401


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 308/549 (56%), Gaps = 7/549 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y+KC  + +A  LFD MP RD +SWN M+SG+  N E   G   F R  EL   
Sbjct: 174 NALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSI- 232

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T ++SAC+      +   +H  V    Y+  ++V N+LI  Y   G       
Sbjct: 233 DPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAES 292

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R+V++WT +ISG V N L ++ L+ +  M +    P+ +T  S + AC+ L  
Sbjct: 293 VFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQ 352

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G ++H +  +      + + ++L+DMYSKC  +E A +IF    + D +S T ++ G
Sbjct: 353 LDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVING 412

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFT 390
              N    EA+  F KM+   ++  PN V+ +  L       +L  GK+IH+  +K+   
Sbjct: 413 LRINNRCFEALIFFRKMI---LKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMG 469

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N ++++Y +CG +  ++  F+ +  ++  +WN ++  +A+ G G   +EL++ M
Sbjct: 470 FDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRM 528

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               + P DVTF+SLL ACS  G+V +G+E+ + M   + I+P  +HYACVVD++GRAG 
Sbjct: 529 VESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGK 588

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FIERMP+KPD  +W ALL AC IH    +G+ AA+ +F    +S   YIL+ N+
Sbjct: 589 LNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNL 648

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ SG+W E AK  + MKE G+  + G SW+E++ +VH+F+  D  HPQ   I+ VL   
Sbjct: 649 YADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGF 708

Query: 631 LRLMIDEGY 639
              M   G+
Sbjct: 709 YEKMKTSGF 717



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/503 (29%), Positives = 247/503 (49%), Gaps = 18/503 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS +++   + NA  +F  M  RD  SWN +V G+ + G FD     + R L  G  
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGI- 131

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L +C  +   +  + +H  V    ++ +V V NALIT Y KCG   S R 
Sbjct: 132 RPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARM 191

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +M  R+ I+W A+ISG  +N    EGL+LF +M    I+P+ +T  S + AC  L  
Sbjct: 192 LFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGD 251

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G Q+H  + + A   ++ + ++L+ MY   G  ++A  +F   E  D VS T I+ G
Sbjct: 252 ERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISG 311

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
              N   ++A++ +  M   G   D   +++VL        L +G ++H L  ++     
Sbjct: 312 CVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILY 371

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MYSKC  +E ++++F ++  ++ +SW S+I     +   F+AL  + +M L
Sbjct: 372 VVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMIL 431

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
           +  +P  VT +S L AC+ VG +  G E     LK+        P A     ++D+  R 
Sbjct: 432 KS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNA-----ILDLYVRC 485

Query: 509 GLLIEARSFIERMPV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYI 565
           G +   R+ + +  + + DV  W  LL   +  G   M     +++  ++  PD    +I
Sbjct: 486 GRM---RTALNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDD-VTFI 541

Query: 566 LMANIYSCSGRWKERAKAIKRMK 588
            +    S SG   E  +  +RMK
Sbjct: 542 SLLCACSRSGMVTEGLEYFQRMK 564



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 185/356 (51%), Gaps = 14/356 (3%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GNAL++ + + G   +   VFG M  R++ +W  ++ G  +   ++E L L+ ++  
Sbjct: 69  VRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILW 128

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             I P+  T+ S + +C+G   L  GR++H  + +     D+ + +AL+ MY KCG V  
Sbjct: 129 AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVS 188

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+     D +S   ++ G+ +N    E ++LF +M +  I+ D   +++V+    +
Sbjct: 189 ARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACEL 248

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
                LG Q+HS ++++ +  N  V N LI MY   G  +++  VFS M  R+ VSW ++
Sbjct: 249 LGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTI 308

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+    +    KALE Y+ M++ G  P +VT  S+L AC+ +G ++ GM       ++H 
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGM-------KLHE 361

Query: 491 ISPRAEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           ++ R  H   VV      DM  +   + +A     ++P K DV+ W +++    I+
Sbjct: 362 LAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK-DVISWTSVINGLRIN 416



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 195/424 (45%), Gaps = 58/424 (13%)

Query: 53  ISAKE--GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           ISA E  G   LG  LH+  ++T   +D            ++NSL+  YL     + A  
Sbjct: 243 ISACELLGDERLGTQLHSYVVRT--AYDGN--------ISVYNSLIQMYLSVGHWKEAES 292

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           +F  M  RD VSW T++SG + N   D     +K ++E+     D+ +   +LSAC    
Sbjct: 293 VFSGMECRDVVSWTTIISGCVDNLLPDKALETYK-TMEITGTMPDEVTIASVLSACASLG 351

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
              +   +H L    G+   V V N+LI  Y KC       ++F ++  ++VI+WT+VI+
Sbjct: 352 QLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVIN 411

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL  N    E L  F KM L    PNS+T +S++ AC+ + AL  G++IH    K  +  
Sbjct: 412 GLRINNRCFEALIFFRKMILK-SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGF 470

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D  + +A++D+Y +CG +  A   F   E+ D  +  ++L G+AQ G     M+LF +MV
Sbjct: 471 DGFLPNAILDLYVRCGRMRTALNQFNLNEK-DVGAWNILLTGYAQKGKGAMVMELFKRMV 529

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           ++  EI+P+ V+ +                                  L+   S+ G + 
Sbjct: 530 ES--EINPDDVTFI---------------------------------SLLCACSRSGMVT 554

Query: 411 DSIKVFSRMAPRNSVSWN-----SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           + ++ F RM     ++ N      ++    R G   +A E  E M    ++P    + +L
Sbjct: 555 EGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMP---IKPDPAIWGAL 611

Query: 466 LHAC 469
           L+AC
Sbjct: 612 LNAC 615



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 155/334 (46%), Gaps = 25/334 (7%)

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES-- 296
           E+ LK    M    I      +++ +  C   +   EG  +    WK  L S + + S  
Sbjct: 15  EQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYV----WKAVLSSLVTLLSVR 70

Query: 297 ---ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
              AL+ M+ + G V +AW +F    E D  S  V++ G+ + GF +EA+ L+ +++ AG
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           I  D     +VL        L  G+++H+ +++ DF  +  V N LI MY KCGD+  + 
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F +M  R+ +SWN+MI+ +  +    + LEL+  M+   ++P  +T  S++ AC  +G
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 474 LVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDV 527
               G       T++H    R  +      Y  ++ M    G   EA S    M  + DV
Sbjct: 251 DERLG-------TQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR-DV 302

Query: 528 LVWQALLGAC--SIHGDSEMGKYAAEKLFLAQPD 559
           + W  ++  C  ++  D  +  Y   ++    PD
Sbjct: 303 VSWTTIISGCVDNLLPDKALETYKTMEITGTMPD 336



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 23/307 (7%)

Query: 18  SSLVSPFITKIIQDPTSSTSKLV-----LDNYVDISRLLSISAKEGHFHLGPSLHASFIK 72
           ++++S  +  ++ D    T K +     + + V I+ +LS  A  G   +G  LH    +
Sbjct: 306 TTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAER 365

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
           T        +Y      V+ NSL+  Y KC ++  A+++F  +P +D +SW ++++G   
Sbjct: 366 T-----GHILY-----VVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRI 415

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEE 190
           N        FF++ +     +    S T+I  LSAC R    +  K IH      G   +
Sbjct: 416 NNRCFEALIFFRKMI----LKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFD 471

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             + NA++  Y +CG   +    F  +  ++V  W  +++G  Q       ++LF +M  
Sbjct: 472 GFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVE 530

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESALMDMYSKCGSVE 309
             INP+ +T++S + ACS    + EG +    +     +  +L   + ++D+  + G + 
Sbjct: 531 SEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLN 590

Query: 310 DAWQIFE 316
           +A +  E
Sbjct: 591 EAHEFIE 597


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 204/556 (36%), Positives = 320/556 (57%), Gaps = 10/556 (1%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N     ++LL  Y KC ++R+A ++FD MP R+TVSWN +++G+  +G+       F 
Sbjct: 124 LANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFL 183

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                G    D+A+F  +L+A +     L+ + +H  +   G    +TV NA IT+Y +C
Sbjct: 184 EMEREGLVP-DEATFASLLTAVEGPSCFLMHQ-LHGKIVKYGSALGLTVLNAAITAYSQC 241

Query: 205 GSSSSGRKVF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLS 262
           GS    R++F G   +R++I+W A++     N + +E +K FV+M     ++P+  ++ S
Sbjct: 242 GSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTS 301

Query: 263 SVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFA 318
            + +CS       +GR IHG++ K AL+    + +AL+ MY++      +EDA++ F   
Sbjct: 302 IISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL 361

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D VS   +L G++Q+G   +A++ F  M    +  D    SA L        L LGK
Sbjct: 362 VLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGK 421

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           QIH L+I S F SN FV++ LI MYSK G ++D+ K F      +SV WN+MI  +A+HG
Sbjct: 422 QIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHG 481

Query: 439 NGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                  L+ EM L+   P D +TF+ L+ +CSH GLV++G E L +M   + +  R EH
Sbjct: 482 QAENVDILFNEM-LQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEH 540

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           YAC VD+ GRAG L +A+  I+ MP +PD +VW  LLGAC IHG+ E+    A  LF+A+
Sbjct: 541 YACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAE 600

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           P   + Y+L++++YS  G W +RA   + MK+ G+ K  G S IE++ +VHSF  +DK H
Sbjct: 601 PRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSH 660

Query: 618 PQADTIHGVLAELLRL 633
           P+ D I+ +L  LL++
Sbjct: 661 PKMDEIYEMLRVLLQV 676



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 228/471 (48%), Gaps = 24/471 (5%)

Query: 88  ATVIWNSLLSFYLKC--DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           A   WN LL+ Y +   D +  A ++FD++P RD VSWN +++    +G     +   + 
Sbjct: 24  APTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRA 83

Query: 146 SLELGFYQLDQASFTIILSACDRS----ELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
               G      AS T  L +  RS        +   +  L    G    V   +AL+  Y
Sbjct: 84  MHAQGL-----ASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVY 138

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCG     R+VF  M  RN ++W A+I+G  ++      L+LF++M    + P+  T+ 
Sbjct: 139 AKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFA 198

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + A  G        Q+HG + K      L + +A +  YS+CGS++D+ +IF+   ++
Sbjct: 199 SLLTAVEGPSCFLM-HQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDI 257

Query: 322 -DGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGV---FGVDTSLGL 376
            D +S   +L  +  NG ++EAM+ FV+M++ +G+  D    ++++      G D     
Sbjct: 258 RDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDH--Q 315

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAA 433
           G+ IH L+IKS       V N LI MY++  +   +ED+ K F+ +  +++VSWNSM+  
Sbjct: 316 GRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTG 375

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +++HG    AL+ +  M  E V   +  F + L + S + ++  G + +  +      + 
Sbjct: 376 YSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQ-IHGLVIHSGFAS 434

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                + ++ M  ++G++ +AR   E    K   + W A++   + HG +E
Sbjct: 435 NDFVSSSLIFMYSKSGIIDDARKSFEEAD-KSSSVPWNAMIFGYAQHGQAE 484



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 24/289 (8%)

Query: 298 LMDMYSKCG--SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           L+  YS+     +  A ++F+     D VS   +L   A +G   EA +L   M   G+ 
Sbjct: 31  LLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQGLA 90

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            +   + + L    V     +G Q+ SL +KS   +N F  + L+++Y+KCG + D+ +V
Sbjct: 91  SNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQV 150

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  RN+VSWN++IA +   G+   ALEL+ EM+ EG+ P + TF SLL A      V
Sbjct: 151 FDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTA------V 204

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMV---------GRAGLLIEARSFIERMPVKPD 526
                FL     +H++  +   Y   + +           + G L ++R   + +    D
Sbjct: 205 EGPSCFL-----MHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRD 259

Query: 527 VLVWQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           ++ W A+LGA + +G D E  K+   ++       P  Y   + I SCS
Sbjct: 260 LISWNAMLGAYTHNGMDDEAMKFFV-RMMQESGVHPDMYSFTSIISSCS 307



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 38/276 (13%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA-----TVIWNSLLSFYLK 101
           I  L+  SA EG   +  +L A + +  E    ++ Y   N+     TV WNS+L+ Y +
Sbjct: 319 IHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQ 378

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
                +A+K F             M S  +R  E+       + S EL   QL       
Sbjct: 379 HGLSADALKFF-----------RCMCSENVRTDEYAFS-AALRSSSELAVLQL------- 419

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
                         K IH LV   G+     V ++LI  Y K G     RK F E    +
Sbjct: 420 -------------GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSS 466

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            + W A+I G  Q+   E    LF +M       + +T++  + +CS    + EG +I  
Sbjct: 467 SVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILN 526

Query: 282 IL-WKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            +  K  +   +   +  +D+Y + G ++ A ++ +
Sbjct: 527 TMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLID 562


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 204/609 (33%), Positives = 333/609 (54%), Gaps = 15/609 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           +++Y  ++ +L + A+ G   LG  LHA+ +K     + Q            N+LL  Y 
Sbjct: 265 MNSYTSVA-VLQVCAELGLLSLGRELHAALLKCGSELNIQ-----------CNALLVMYA 312

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K  ++ +A+++F  +  +D +SWN+M+S +++N  +     FF   L+ GF Q D A   
Sbjct: 313 KYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGF-QPDHACVV 371

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            + SA          +  H          ++ VGN L+  Y KCGS     KVF  M +R
Sbjct: 372 SLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR 431

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           + I+WT +++   Q+  + E L++ +++    I  +S+   S +  C GL+++   +Q+H
Sbjct: 432 DHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVH 491

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
               +  L  DL +E+ L+D+Y +CG  + +  +F+  E+ D VS T ++     NG   
Sbjct: 492 CYAIRNGLL-DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLN 550

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
            A+ LF +M KA I+ D   + ++L      +SL  GKQ+H  +I+ +F     V + L+
Sbjct: 551 GAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLV 610

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MYS CG +  +I+VF R   ++ V W +MI A   HG+G +A++L++ M   G+ P  V
Sbjct: 611 DMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHV 670

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           +FL+LL+ACSH  LV +G  +L  M   +R+ P  EHYACVVD++GR+G   EA  FI+ 
Sbjct: 671 SFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKT 730

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP+ P   VW ALLGAC +H +  +   AA KL   +PD+P  YIL++N+++  G+W   
Sbjct: 731 MPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNA 790

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GY 639
            +   RM E G+ K    SWIEI   +H+F   D  H  ++ IH  L+E+  ++  E GY
Sbjct: 791 KETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGY 850

Query: 640 VPNKRFILH 648
           V + RF+LH
Sbjct: 851 VEDTRFVLH 859



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 267/535 (49%), Gaps = 28/535 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ +L     EG    G  +H   +K            +  +T++ N+L+  Y KC  + 
Sbjct: 167 LASVLKACGAEGDGRCGGEVHGLAVKV----------GLDKSTLVANALIGMYAKCGLLD 216

Query: 107 NAVKLFD--DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +A+++F+      RD  SWN++VSG ++NG        F R ++   + ++  +   +L 
Sbjct: 217 SALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF-RGMQSAGFPMNSYTSVAVLQ 275

Query: 165 ACDRSELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            C  +EL L+S  + +H  +  CG E  +   NAL+  Y K G   S  +VFG++  ++ 
Sbjct: 276 VC--AELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDY 332

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           I+W +++S  VQN  Y E +  F +M      P+    +S   A   L  L  GR+ H  
Sbjct: 333 ISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAY 392

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K  L +DL + + LMDMY KCGS+E + ++FE     D +S T IL  FAQ+    EA
Sbjct: 393 AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEA 452

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +++ +++ K GI +D  M+ ++L       S+ L KQ+H   I++    +  + N LI++
Sbjct: 453 LEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL-DLILENRLIDI 511

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y +CG+ + S+ +F R+  ++ VSW SMI     +G    A+ L+ EM+   ++P  V  
Sbjct: 512 YGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVAL 571

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM 521
           +S+L A + +  + KG +    +  + R  P      + +VDM    G +  A    ER 
Sbjct: 572 VSILVAIAGLSSLTKGKQVHGFL--IRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERA 629

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
             K DV++W A++ A  +HG    GK A +  K  L    +P     +A +Y+CS
Sbjct: 630 KCK-DVVLWTAMINATGMHGH---GKQAIDLFKRMLQTGLTPDHVSFLALLYACS 680



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 151/531 (28%), Positives = 249/531 (46%), Gaps = 49/531 (9%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSLELGF 151
           L+  Y +C ++ +A +LF+ MP R   SWN +V  +L +G   E    +G  + S   G 
Sbjct: 101 LVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGS 160

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D  +   +L AC           +H L    G ++   V NALI  Y KCG   S  
Sbjct: 161 AP-DGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSAL 219

Query: 212 KVFG--EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           +VF   +   R+V +W +V+SG VQN    E L LF  M       NS T ++ +  C+ 
Sbjct: 220 RVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAE 279

Query: 270 LQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           L  L  GR++H  L K    S+L I+ +AL+ MY+K G V+ A ++F    E D +S   
Sbjct: 280 LGLLSLGRELHAALLKCG--SELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNS 337

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L  + QN F  EA+  F +M++ G + D   V ++    G  + L  G++ H+  IK  
Sbjct: 338 MLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQR 397

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             ++  V N L++MY KCG +E S KVF  M  R+ +SW +++A FA+     +ALE+  
Sbjct: 398 LHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMIL 457

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VD 503
           E++ EG+    +   S+L  C        G++ +  + +VH  + R      +     +D
Sbjct: 458 ELQKEGIMVDSMMIGSILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENRLID 510

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDSP 561
           + G  G    + +  +R+  K D++ W +++  C+ +G      +   ++  A  QPDS 
Sbjct: 511 IYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSV 569

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           A   ++  I                          G+S +   KQVH F++
Sbjct: 570 ALVSILVAI-------------------------AGLSSLTKGKQVHGFLI 595



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 173/350 (49%), Gaps = 9/350 (2%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +   L+  Y +CG     R++F  M  R V +W A++   + +    E ++++  M    
Sbjct: 97  LATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASA 156

Query: 253 I---NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                P+  T  S + AC        G ++HG+  K+ L     + +AL+ MY+KCG ++
Sbjct: 157 APGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLD 216

Query: 310 DAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
            A ++FE+ ++   D  S   ++ G  QNG   EA+ LF  M  AG  ++     AVL V
Sbjct: 217 SALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQV 276

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                 L LG+++H+ ++K     N    N L+ MY+K G ++ +++VF ++A ++ +SW
Sbjct: 277 CAELGLLSLGRELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISW 335

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           NSM++ + ++    +A++ + EM   G +P     +SL  A  H+  +N G EF  +   
Sbjct: 336 NSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREF-HAYAI 394

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
             R+    +    ++DM  + G +  +    E M ++ D + W  +L AC
Sbjct: 395 KQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-AC 442



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 8/174 (4%)

Query: 377 GKQIHSLIIKS---DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           G+Q+H+  + +   +   + F+   L+ MY +CG ++D+ ++F+ M  R   SWN+++ A
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 434 FARHGNGFKALELYEEMKLE---GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +   G+  +A+ +Y  M+     G  P   T  S+L AC   G    G E      +V  
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG- 194

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDS 543
           +         ++ M  + GLL  A    E +     DV  W +++  C  +G +
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRT 248


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 207/612 (33%), Positives = 325/612 (53%), Gaps = 20/612 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LL  SA+      G  LH +  K     D          T++ N+L+  Y+KC ++ 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSD----------TMLGNNLIDMYVKCGELD 56

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F  M  R+ VSW  ++ GFLR+G+                   ++ + +  L AC
Sbjct: 57  LACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKAC 116

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRVRNVITW 225
                +     IH L    GY+E   V ++L+  Y K G     R+VF G      + TW
Sbjct: 117 CVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATW 176

Query: 226 TAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            A++SG        + L +F +M  H G   P+  T+ S + ACSGL A  EG Q+H  +
Sbjct: 177 NAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAM 236

Query: 284 WK--LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
                +  S+  +  AL+DMY KC  +  A Q+FE  E  + +  T ++VG AQ G   E
Sbjct: 237 TASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTE 296

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A++LF +  ++G   D +++S+V+GV      +  G+Q+H   IK    ++    N +++
Sbjct: 297 ALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVD 356

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY KCG  +++ ++F  M   N VSW +M+    +HG G +A+ L+EEM+  GVEP +VT
Sbjct: 357 MYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVT 416

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           +L+LL ACSH GLV++   +   +     + P+AEHYAC+VD++GRAG L EAR  I  M
Sbjct: 417 YLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTM 476

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P++P V VWQ LL AC +H D  +G+ A + L     D+P  Y+ ++N+ + +G W+E  
Sbjct: 477 PMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECH 536

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFV---VDDKMHPQADTIHGVLAELLRLMIDE- 637
           K    M+  G+ K+ G SW+E+ K+VH F     +++ HPQA  I  VL ++   M ++ 
Sbjct: 537 KVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQL 596

Query: 638 GY-VPNKRFILH 648
           GY   + RF LH
Sbjct: 597 GYNADDARFALH 608



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 29/240 (12%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M++ +L      +SL  G Q+H  I K  F S+  + N LI+MY KCG+L+ + +VF  
Sbjct: 5   KMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGG 64

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNK 477
           M  RN VSW +++  F RHG+    L L  EM+      P + T  + L AC  VG    
Sbjct: 65  MRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAA 124

Query: 478 GMEFLKSMTEVHRISPRA---EHYACVVDMV---GRAGLLIEARSFIERMPVKPDVLVWQ 531
           G+        +H +  RA   EH      +V    + G + +AR   +   +   +  W 
Sbjct: 125 GV-------GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWN 177

Query: 532 ALLG--ACSIHGDS------EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           A++   A + HG        EM ++  +     QPD    +   + + +CSG    R  A
Sbjct: 178 AMVSGYAHAGHGRDALLVFREMRRHEGQH----QPDE---FTFASLLKACSGLGATREGA 230


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 189/538 (35%), Positives = 306/538 (56%), Gaps = 7/538 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK---RSLEL 149
           ++L+  Y+K  ++    ++F+ M  R+ VSW  +++G +  G    G  +F    RS ++
Sbjct: 163 SALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRS-KV 221

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G+   D  +F I L A   S L    K IH      G++E   V N L T Y KCG    
Sbjct: 222 GY---DSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDY 278

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             ++F +MR+ +V++WT +IS  VQ    E  ++ F +M    ++PN  T+ + + +C+ 
Sbjct: 279 VMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCAN 338

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L A   G QIHG + +L L + L + ++++ +YSKCG ++ A  +F      D +S + I
Sbjct: 339 LAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTI 398

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  ++Q G+ +EA      M + G + +   +S+VL V G    L  GKQ+H+ ++    
Sbjct: 399 ISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGI 458

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                V++ +I+MYSKCG ++++ K+F+ M   + +SW +MI  +A HG   +A+ L+E+
Sbjct: 459 DHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEK 518

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           +   G++P  V F+ +L AC+H G+V+ G  +   MT V+RISP  EHY C++D++ RAG
Sbjct: 519 ISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAG 578

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA   I  MP   D +VW  LL AC +HGD + G++ AE+L    P+S   +I +AN
Sbjct: 579 RLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGTHITLAN 638

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           IY+  GRWKE A   K MK  GV KE G SW+ +  Q+++FV  D+ HPQ++ I  VL
Sbjct: 639 IYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDQLNAFVAGDQAHPQSEHITTVL 696



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 225/473 (47%), Gaps = 6/473 (1%)

Query: 75  EPFDNQ---NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           +P   Q   N Y+V N   + NS L   +K  Q+  A  +FD M  RD +SW T+++G++
Sbjct: 41  QPIQEQPAENAYSVHNMLEL-NSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYV 99

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
              +       F         Q DQ   ++ L AC         +++H      G    V
Sbjct: 100 NASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSV 159

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            V +ALI  Y K G    G +VF +M  RNV++WTA+I+GLV      EGL  F +M   
Sbjct: 160 FVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRS 219

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +  +S T+  ++ A +    L  G+ IH    K        + + L  MY+KCG  +  
Sbjct: 220 KVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYV 279

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++FE     D VS T ++  + Q G EE A++ F +M K+ +  +    +AV+      
Sbjct: 280 MRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANL 339

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +   G+QIH  +++    +   V N +I +YSKCG L+ +  VF  +  ++ +SW+++I
Sbjct: 340 AAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTII 399

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           + +++ G   +A +    M+ EG +P +    S+L  C  + L+ +G +    +  +  I
Sbjct: 400 SVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCI-GI 458

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              A  ++ ++ M  + G + EA      M +  D++ W A++   + HG S+
Sbjct: 459 DHEAMVHSAIISMYSKCGSVQEASKIFNGMKIN-DIISWTAMINGYAEHGYSQ 510



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S +LS+         G  +HA  +             + +  ++ ++++S Y KC
Sbjct: 426 NEFALSSVLSVCGSMALLEQGKQVHAHLL----------CIGIDHEAMVHSAIISMYSKC 475

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++ A K+F+ M + D +SW  M++G+  +G        F++   +G  + D   F  +
Sbjct: 476 GSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGL-KPDYVMFIGV 534

Query: 163 LSACDRS 169
           L+AC+ +
Sbjct: 535 LTACNHA 541


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 203/601 (33%), Positives = 315/601 (52%), Gaps = 50/601 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           +RLL++ AK G        HA   K F+    ++ ++       WN++LS Y K   + +
Sbjct: 62  NRLLNLYAKSGEIS-----HAR--KLFDEMTQRDNFS-------WNAMLSLYAKSGLVED 107

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
              +FD+MP RD+VS+NT++SGF  NG      G F R  + G    +    ++ L+AC 
Sbjct: 108 LRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSV-LNACT 166

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           +       K IH  + +C     V V NAL   Y +CG     R++F  M +RNV+TW  
Sbjct: 167 QLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNL 226

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG ++N+  E+ + LF +M +  + P+ +T                            
Sbjct: 227 MISGYLKNRQPEKCIDLFHEMQVSNLKPDQVT---------------------------- 258

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                   S+++  Y + G +++A ++F    E D V  T+++VG AQNG EE+A+ LF 
Sbjct: 259 -------ASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFS 311

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M+      D   +S+V+       SL  G+ +H          +  V++ L++MY KCG
Sbjct: 312 EMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCG 371

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
              D+  +FS M  RN VSWNSMI  +A +G   +AL LYE M  E ++P  VTF+ +L 
Sbjct: 372 VTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLS 431

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC H GLV +G E+  SM++ H + P  +HYAC+V++ GR+G + +A   I  M  +P+ 
Sbjct: 432 ACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNS 491

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
           L+W  +L  C + GD + G+ AA  L    P +  PYI+++N+Y+  GRWK+ A     M
Sbjct: 492 LIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLM 551

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           K   V K +  SWIEI+ +VH FV DD+ HP A  IH  L  L+R + + G+ PN   +L
Sbjct: 552 KSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVL 611

Query: 648 H 648
           H
Sbjct: 612 H 612



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 152/320 (47%), Gaps = 11/320 (3%)

Query: 239 EEGLKLFVKMHLGLINPNSL---TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           ++  +L   MHL L  PN       L ++ A SG   +   R+    L+    Q D    
Sbjct: 39  DQAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSG--EISHARK----LFDEMTQRDNFSW 92

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +A++ +Y+K G VED   IF+     D VS   ++ GFA NG    A+ +F++M K G++
Sbjct: 93  NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLK 152

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                  +VL        L  GKQIH  II  +   N FV N L ++Y++CG+++ + ++
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F RM  RN V+WN MI+ + ++    K ++L+ EM++  ++P  VT  S+L A    G +
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           ++  +    + E   +        C  +      LL+ +   +E    +PD     +++ 
Sbjct: 273 DEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLEN--ARPDGYTISSVVS 330

Query: 536 ACSIHGDSEMGKYAAEKLFL 555
           +C+       G+    K FL
Sbjct: 331 SCAKLASLYHGQVVHGKAFL 350



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 78/385 (20%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA------------------------- 227
           + N L+  Y K G  S  RK+F EM  R+  +W A                         
Sbjct: 60  IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRD 119

Query: 228 ------VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
                 VISG   N      L +F++M    + P   T++S + AC+ L  L  G+QIHG
Sbjct: 120 SVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHG 179

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +    L  ++ + +AL D+Y++CG ++ A ++F+     + V+  +++ G+ +N   E+
Sbjct: 180 RIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            + LF +M  + ++ D    S+VLG                                   
Sbjct: 240 CIDLFHEMQVSNLKPDQVTASSVLGA---------------------------------- 265

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            Y + G ++++ KVF  +  ++ V W  MI   A++G    AL L+ EM LE   P   T
Sbjct: 266 -YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYT 324

Query: 462 FLSLLHACSHV-----GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
             S++ +C+ +     G V  G  FL  + +   +S      + +VDM  + G+  +A +
Sbjct: 325 ISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVS------SALVDMYCKCGVTRDAWT 378

Query: 517 FIERMPVKPDVLVWQALLGACSIHG 541
               M  + +V+ W +++G  +++G
Sbjct: 379 IFSTMQTR-NVVSWNSMIGGYALNG 402


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 317/561 (56%), Gaps = 7/561 (1%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N   + ++L+  Y KC QM +AVK+F + P +D V W ++++G+ +NG  ++   FF 
Sbjct: 136 IDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFS 195

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           R + L     D  +     SAC +     + + +H  V   G++ ++ + N+++  Y K 
Sbjct: 196 RMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKT 255

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           GS  S   +F EM  +++I+W+++++    N      L LF +M    I  N +T +S++
Sbjct: 256 GSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISAL 315

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+    L EG+ IH +      + D+ + +ALMDMY KC S ++A  +F    + D V
Sbjct: 316 RACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVV 375

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IH 381
           S  V+  G+A+ G   +++ +F  M+  G   D     A++ +    + LG+ +Q   +H
Sbjct: 376 SWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPD---AIALVKILAASSELGIVQQALCLH 432

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + + KS F +N F+   LI +Y+KC  ++++ KVF  M  ++ V+W+S+IAA+  HG G 
Sbjct: 433 AFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGE 492

Query: 442 KALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
           +AL+L+ +M     V+P DVTF+S+L ACSH GL+ +G++    M   +++ P  EHY  
Sbjct: 493 EALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGI 552

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +VD++GR G L +A   I  MP++    VW ALLGAC IH + ++G+ AA  LFL  P+ 
Sbjct: 553 MVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNH 612

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              Y L++NIY     W + AK    +KE    K  G S +EI+ +VHSF+  D+ H ++
Sbjct: 613 AGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDRFHGES 672

Query: 621 DTIHGVLAELLRLMIDEGYVP 641
           D I+G+L +L   M +EGY P
Sbjct: 673 DQIYGMLRKLDARMKEEGYDP 693



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/494 (25%), Positives = 237/494 (47%), Gaps = 19/494 (3%)

Query: 64  PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
           P LH+  +K            + + + +   L   Y +   + +A KLF++ P +    W
Sbjct: 21  PQLHSQCLKV----------GLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLW 70

Query: 124 NTMVSGFLRNGEFDMGFGFFKR--SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           N ++  +   G++      F +  +  +   + D  + +I L +C   +   + KMIH  
Sbjct: 71  NALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGF 130

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           +     + ++ VG+ALI  Y KCG  +   KVF E   ++V+ WT++I+G  QN   E  
Sbjct: 131 LKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELA 190

Query: 242 LKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           L  F +M  L  ++P+ +T +S+  AC+ L     GR +HG + +    + LC+ +++++
Sbjct: 191 LAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILN 250

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           +Y K GS+  A  +F      D +S + ++  +A NG E  A+ LF +M+   IE++   
Sbjct: 251 LYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVT 310

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           V + L      ++L  GK IH L +   F  +  V+  L++MY KC   +++I +F+RM 
Sbjct: 311 VISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP 370

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            ++ VSW  + + +A  G   K+L ++  M   G  P  +  + +L A S +G+V + + 
Sbjct: 371 KKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQAL- 429

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            L +              A ++++  +   +  A    + M  K DV+ W +++ A   H
Sbjct: 430 CLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRK-DVVTWSSIIAAYGFH 488

Query: 541 GDSEMGKYAAEKLF 554
           G  E     A KLF
Sbjct: 489 GQGE----EALKLF 498



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 187/406 (46%), Gaps = 26/406 (6%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H      G   +  V   L   Y +  S     K+F E   + V  W A++        
Sbjct: 23  LHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGK 82

Query: 238 YEEGLKLFVKMHLGLIN---PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           + E L LF +M+   I    P++ T   ++ +CSGLQ L  G+ IHG L K  + +D+ +
Sbjct: 83  WVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFV 142

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AG 353
            SAL+++YSKCG + DA ++F    + D V  T I+ G+ QNG  E A+  F +MV    
Sbjct: 143 GSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQ 202

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           +  DP  + +        +   LG+ +H  + +  F +   + N ++N+Y K G +  + 
Sbjct: 203 VSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAA 262

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F  M  ++ +SW+SM+A +A +G    AL L+ EM  + +E   VT +S L AC+   
Sbjct: 263 NLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSS 322

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL---------IEARSFIERMPVK 524
            + +G         +H++   A +Y   +D+     L+           A     RMP K
Sbjct: 323 NLEEG-------KHIHKL---AVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMP-K 371

Query: 525 PDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMA 568
            DV+ W  L    +  G     +G +     +  +PD+ A   ++A
Sbjct: 372 KDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILA 417



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 88/199 (44%), Gaps = 5/199 (2%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+HS  +K     + FV   L  +Y++   L  + K+F     +    WN+++ ++   G
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 439 NGFKALELYEEMKLEGV---EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
              + L L+ +M  + +    P + T    L +CS +  +  G + +    +  +I    
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELG-KMIHGFLKKKKIDNDM 140

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
              + ++++  + G + +A       P K DV++W +++     +G  E+      ++ +
Sbjct: 141 FVGSALIELYSKCGQMNDAVKVFTEYP-KQDVVLWTSIITGYEQNGSPELALAFFSRMVV 199

Query: 556 AQPDSPAPYILMANIYSCS 574
            +  SP P  L++   +C+
Sbjct: 200 LEQVSPDPVTLVSAASACA 218


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 326/594 (54%), Gaps = 36/594 (6%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y KC  + +A+ LFD+MP RD  SWNTM+S  ++   ++     F+   +  
Sbjct: 240 VANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNK 299

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            ++ DQ + + +L+AC R    +  + IH      G E  ++V NA+I  Y +CGS +  
Sbjct: 300 GFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHV 359

Query: 211 RKVFGEMRVRNVITWTAVIS-----GLVQ------NQLYE-----------------EGL 242
             +F  M VR++ITWT +I+     GLV       N++ E                 EGL
Sbjct: 360 AALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGL 419

Query: 243 K---LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           K   LFV+M          T    + AC  L  L   RQIHG + K   +S+ CIE+AL+
Sbjct: 420 KALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALI 479

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSM--TVILVGFAQNGFEEEAMQLFVKMVKAG-IEI 356
           DM SKCG ++DA ++F+      G S+  T ++ G+A+NG  EEA+ LF +    G + +
Sbjct: 480 DMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVL 539

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D    +++LGV G      +GKQIH   +K+ F +   V N +I+MYSKC +++D+IK F
Sbjct: 540 DEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAF 599

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC--SHVGL 474
           + M   + VSWN +IA    H  G +AL ++  M+  G++P  +TF+ ++ A   +   L
Sbjct: 600 NTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNL 659

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +++      SM  +H + P +EHYA +V ++G  GLL EA   I +MP  P+V VW+ALL
Sbjct: 660 LDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALL 719

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
             C +H ++ +GK  A+ +   +P  P+ Y+L++N+Y+ SGRW       + M++ G+ K
Sbjct: 720 DGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRDRGLRK 779

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
               SW+ I+KQ+H+F   DK HPQ++ I+  L  L+   +  GY P+  F+L 
Sbjct: 780 HPCRSWVIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCLKAGYEPDMSFVLQ 833



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 164/606 (27%), Positives = 286/606 (47%), Gaps = 78/606 (12%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           L S+FP  S+  SP         T++   + +D   D+  LL +S K     L  +LHAS
Sbjct: 81  LESSFPLDSNYHSP--------QTNTDCLIEVD---DLFNLLRLSVKYTDIDLARALHAS 129

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            +K  E             T + N++++ Y+K   + +A ++F  M   D VS++ ++S 
Sbjct: 130 ILKLGED------------THLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISS 177

Query: 130 FLR-NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE 188
           F + N E +    FF+  + +   + ++ SF  IL+AC RS    +   +H L    GY 
Sbjct: 178 FSKLNRETEAIQLFFR--MRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYS 235

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           + V V NALI  Y KCG       +F EM  R++ +W  +IS LV+   YE+ L+LF  +
Sbjct: 236 QLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVL 295

Query: 249 HLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           +       +  T  + + AC+   A  +GR+IH    ++ L+++L + +A++  Y++CGS
Sbjct: 296 NQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGS 355

Query: 308 VEDAWQIFE----------------FAE---------------ELDGVSMTVILVGFAQN 336
           +     +FE                + E               E + VS   +L GF +N
Sbjct: 356 LNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKN 415

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
               +A+ LFV+MV+ G E+    ++ V+   G+   L + +QIH  IIK  F SN  + 
Sbjct: 416 NEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIE 475

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
             LI+M SKCG ++D+ ++F  ++    NS+   SMI  +AR+G   +A+ L+   + EG
Sbjct: 476 AALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEG 535

Query: 455 VEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGR 507
               D V F S+L  C  +G    G        ++H  + +   +A       ++ M  +
Sbjct: 536 TMVLDEVAFTSILGVCGTLGFHEVG-------KQIHCQALKTGFHAELGVGNSIISMYSK 588

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPAPYI 565
              + +A      MP   DV+ W  L+    +H  GD  +  +++ +    +PD+   ++
Sbjct: 589 CYNIDDAIKAFNTMP-GHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDA-ITFV 646

Query: 566 LMANIY 571
           L+ + Y
Sbjct: 647 LIVSAY 652



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 184/391 (47%), Gaps = 13/391 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + W  +++ Y++   +  AV +F+ MP +++VS+N +++GF +N E       F R ++ 
Sbjct: 372 ITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQE 431

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  +L   + T +++AC       +S+ IH  +   G+     +  ALI    KCG    
Sbjct: 432 G-AELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDD 490

Query: 210 GRKVFGEMRVR--NVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
             ++F  +     N I  T++I G  +N L EE + LF +    G +  + + + S +  
Sbjct: 491 ADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGV 550

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L     G+QIH    K    ++L + ++++ MYSKC +++DA + F      D VS 
Sbjct: 551 CGTLGFHEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSW 610

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD-TSLGLGKQIHSLII 385
             ++ G   +   +EA+ ++  M KAGI+  P+ ++ VL V     TS  L  +  SL +
Sbjct: 611 NGLIAGQLLHRQGDEALAIWSSMEKAGIK--PDAITFVLIVSAYKFTSSNLLDECRSLFL 668

Query: 386 K----SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
                 D          L+ +    G LE++ ++ ++M     VS W +++     H N 
Sbjct: 669 SMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHANT 728

Query: 441 FKALELYEE-MKLEGVEPTDVTFLSLLHACS 470
                + +  + +E  +P+    +S L+A S
Sbjct: 729 SIGKRVAKHIIGMEPRDPSTYVLVSNLYAAS 759


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 199/551 (36%), Positives = 307/551 (55%), Gaps = 9/551 (1%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +++  + KC  + +A ++F++MP RD  SW  ++ G + NGE       F++    G   
Sbjct: 172 AVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMP 231

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D      IL AC R E   +   +       G+E ++ V NA+I  Y KCG      +V
Sbjct: 232 -DSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRV 290

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQA 272
           F  M   +V++W+ +I+G  QN LY+E  KL++ M ++GL   N++   S + A   L+ 
Sbjct: 291 FSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLAT-NAIVATSVLPALGKLEL 349

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+++H  + K  L SD+ + SAL+ MY+ CGS+++A  IFE   + D +    ++VG
Sbjct: 350 LKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVG 409

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDF 389
           +   G  E A   F ++   G E  PN ++ V+ +  + T +G    GK+IH  + KS  
Sbjct: 410 YNLVGDFESAFFTFRRI--WGAEHRPNFIT-VVSILPICTQMGALRQGKEIHGYVTKSGL 466

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N  V N LI+MYSKCG LE   KVF +M  RN  ++N+MI+A   HG G K L  YE+
Sbjct: 467 GLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQ 526

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK EG  P  VTF+SLL ACSH GL+++G     SM   + I P  EHY+C+VD++GRAG
Sbjct: 527 MKEEGNRPNKVTFISLLSACSHAGLLDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAG 586

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L  A  FI RMP+ PD  V+ +LLGAC +H   E+ +  AE++   + D    Y+L++N
Sbjct: 587 DLDGAYKFITRMPMTPDANVFGSLLGACRLHNKVELTELLAERILQLKADDSGHYVLLSN 646

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+   RW++ +K    +K+ G++K+ G SWI++   ++ F      HP    I   L  
Sbjct: 647 LYASGKRWEDMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNS 706

Query: 630 LLRLMIDEGYV 640
           LL +M  E Y+
Sbjct: 707 LLLVMKSEDYM 717



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 253/518 (48%), Gaps = 14/518 (2%)

Query: 59  HFHLGPSLHASFIKT--FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           + H   +LHA  +    F+P         P+++   + L++ Y+    +++A   F  +P
Sbjct: 42  NLHEARTLHALLLVLGFFQP-------TCPHSSSFASQLVNVYVNFGSLQHAFLTFRALP 94

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            +  ++WN ++ G +  G F     F+   L+ G    D  ++ ++L AC       + +
Sbjct: 95  HKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTP-DNYTYPLVLKACSSLHALQLGR 153

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H  ++    +  V V  A+I  + KCGS    R++F EM  R++ +WTA+I G + N 
Sbjct: 154 WVHETMH-GKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWTALICGTMWNG 212

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              E L LF KM    + P+S+   S + AC  L+A+  G  +     +   +SDL + +
Sbjct: 213 ECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRSGFESDLYVSN 272

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           A++DMY KCG   +A ++F      D VS + ++ G++QN   +E+ +L++ M+  G+  
Sbjct: 273 AVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKLYIGMINVGLAT 332

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +  + ++VL   G    L  GK++H+ ++K    S+  V + LI MY+ CG ++++  +F
Sbjct: 333 NAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGSALIVMYANCGSIKEAESIF 392

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
              + ++ + WNSMI  +   G+   A   +  +      P  +T +S+L  C+ +G + 
Sbjct: 393 ECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVSILPICTQMGALR 452

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G E    +T+   +         ++DM  + G L       ++M V+ +V  +  ++ A
Sbjct: 453 QGKEIHGYVTK-SGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMVR-NVTTYNTMISA 510

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           C  HG  E G    E++   + + P     ++ + +CS
Sbjct: 511 CGSHGQGEKGLAFYEQM-KEEGNRPNKVTFISLLSACS 547



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N++ +  +L I  + G    G  +H    K+    +            + NSL+  Y KC
Sbjct: 434 NFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLN----------VSVGNSLIDMYSKC 483

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +    K+F  M +R+  ++NTM+S    +G+ + G  F+++  E G  + ++ +F  +
Sbjct: 484 GFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEG-NRPNKVTFISL 542

Query: 163 LSACDRSEL 171
           LSAC  + L
Sbjct: 543 LSACSHAGL 551


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/588 (33%), Positives = 332/588 (56%), Gaps = 13/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  +HA  +K+    D   VY       + N+L++ Y  C QM +A ++F  M  +D V
Sbjct: 269 IGRGIHAVILKSNHFTD---VY-------VSNALIAMYANCGQMEDAERVFKSMLFKDCV 318

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWNT++SG ++N  +      F+   + G  + DQ S   +++A  RS   L    +H  
Sbjct: 319 SWNTLLSGMVQNDMYSDAINHFQDMQDSG-QKPDQVSVLNMIAASGRSANLLAGMEVHAY 377

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G +  + +GN+LI  Y KC         F  M  +++I+WT +I+G  QN+ + + 
Sbjct: 378 AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDA 437

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L L  K+ L  ++ + +   S ++ACSGL++    ++IHG + K  L +D+ I++A++++
Sbjct: 438 LNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADILIQNAIVNV 496

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y +   V+ A  +FE     D VS T ++     NG   EA++LF  +++  IE D   +
Sbjct: 497 YGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITL 556

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
            +VL      +SL  GK+IH  +I+  F     + N L++MY++CG +E++  +F+ +  
Sbjct: 557 VSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQ 616

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ + W SMI A   HG G  A++L+ +M  E V P  +TFL+LL+ACSH GLV +G + 
Sbjct: 617 RDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQH 676

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M   +++ P  EHYAC+VD++ R+  L EA  F+  MP++P   VW ALLGAC IH 
Sbjct: 677 FEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHS 736

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           ++++G+ AA+KL     ++   Y+L++N ++  GRW +  +    MK   + K+ G SWI
Sbjct: 737 NNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWI 796

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           E+E ++H+F+  DK HPQ + I+  LA+  +L+ ++ GY    + + H
Sbjct: 797 EVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFH 844



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 149/524 (28%), Positives = 244/524 (46%), Gaps = 27/524 (5%)

Query: 25  ITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN 84
           +T    DP  +T++  L      S+ L + A       G  LHA F+KT          N
Sbjct: 29  LTHFFTDPLPTTTRFPLQQAY--SQALELCASHKALPQGQQLHAHFLKT---------QN 77

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
             ++  +    +  Y KC    +AVK+FD M  R   +WN M+   +  G +      +K
Sbjct: 78  YLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYK 137

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               LG   LD  +F  +L AC   +   +   IH +   CGY   V V NALI  Y KC
Sbjct: 138 EMRVLGV-SLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKC 196

Query: 205 GSSSSGRKVF--GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           G     R +F  G M   + ++W ++IS  V      E L LF +M    +  N+ T++S
Sbjct: 197 GDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVS 256

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ AC G   +  GR IH ++ K    +D+ + +AL+ MY+ CG +EDA ++F+     D
Sbjct: 257 ALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKD 316

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   +L G  QN    +A+  F  M  +G + D   V  ++   G   +L  G ++H+
Sbjct: 317 CVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHA 376

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             IK    SN  + N LI+MY KC  ++     F  M  ++ +SW ++IA +A++     
Sbjct: 377 YAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLD 436

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH----- 497
           AL L  +++LE ++   +   S+L ACS       G++  K + E+H    +        
Sbjct: 437 ALNLLRKVQLEKMDVDPMMIGSILLACS-------GLKSEKLIKEIHGYVLKGGLADILI 489

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              +V++ G   L+  AR   E +  K D++ W +++  C  +G
Sbjct: 490 QNAIVNVYGELALVDYARHVFESINSK-DIVSWTSMITCCVHNG 532


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 311/564 (55%), Gaps = 12/564 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF-LRNGEFDMGFGFFKRSLELGF 151
            +L+ FY KC  + +A ++FD M  RD V+WN+M+SGF L  G +D       R L    
Sbjct: 158 TALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDE----VARLLVQMQ 213

Query: 152 YQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +   S TI+  L A  +       K IH      G+  +V VG  ++  Y KC     
Sbjct: 214 NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDY 273

Query: 210 GRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMHL---GLINPNSLTYLSSVM 265
            R++F  M  V+N +TW+A++   V      E L+LF ++ +    +I  +++T  + + 
Sbjct: 274 ARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIR 333

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C+ L  L  G  +H    K     DL + + L+ MY+KCG +  A + F   +  D VS
Sbjct: 334 VCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS 393

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T I+ G+ QNG  EE +++F++M  +GI  +   +++VL        L  G   H   I
Sbjct: 394 FTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAI 453

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
              FT++  + N LI+MY+KCG ++ + KVF RM  R  VSWN+MI A+  HG G +AL 
Sbjct: 454 ICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALL 513

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L++ M+ EG++P DVTF+ L+ ACSH GLV +G  +  +MT+   I PR EHYAC+VD++
Sbjct: 514 LFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLL 573

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            RAGL  E  SFIE+MP++PDV VW ALL AC ++ + E+G+  ++K+    P+S   ++
Sbjct: 574 SRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFV 633

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD-KMHPQADTIH 624
           L++N+YS  GRW + A+     KE G +K  G SWIEI   VH+F+    + HPQ   I 
Sbjct: 634 LLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQIS 693

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L ELL  M   GY     ++  
Sbjct: 694 NKLDELLVEMKRLGYQAESSYVFQ 717



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 137/494 (27%), Positives = 251/494 (50%), Gaps = 30/494 (6%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           H HL   LH    +T E        N+ N  V +  L+  Y+ C +++ A  +FD MP R
Sbjct: 32  HQHLLKCLH----RTHET-------NLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHR 80

Query: 119 --DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
             + V WN ++  +  NG ++     + + L  G    ++ +F  +L AC   + +   +
Sbjct: 81  PKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITP-NRFTFPFVLKACSALKEASEGR 139

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL-VQN 235
            IHC +     E  V V  AL+  Y KCG     ++VF +M  R+V+ W ++ISG  +  
Sbjct: 140 EIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHE 199

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             Y+E  +L V+M    ++PNS T +  + A + + +L  G++IHG   +     D+ + 
Sbjct: 200 GSYDEVARLLVQMQ-NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVG 258

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG- 353
           + ++D+Y KC  ++ A +IF+    + + V+ + ++  +    F  EA++LF +++    
Sbjct: 259 TGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKD 318

Query: 354 --IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             I +    ++ V+ V    T L  G  +H   IKS F  +  V N L++MY+KCG +  
Sbjct: 319 DVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIING 378

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +++ F+ M  R++VS+ ++I+ + ++GN  + L ++ EM+L G+ P   T  S+L AC+H
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH 438

Query: 472 VGLVNKGMEFLKSMTEVHRI--SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDV 527
           +  ++ G     S +  + I     A+   C  ++DM  + G +  AR   +RM  K  +
Sbjct: 439 LAGLHYG-----SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMH-KRGI 492

Query: 528 LVWQALLGACSIHG 541
           + W  ++ A  IHG
Sbjct: 493 VSWNTMIIAYGIHG 506



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 205/409 (50%), Gaps = 33/409 (8%)

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGN------ALITSYFKCGSSSSGRK 212
           T++L +C +S+     K+IH  +  C +   E  + N       L+  Y  C      R 
Sbjct: 13  TVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARH 72

Query: 213 VFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           VF +M  R +NV+ W  +I     N  YEE + L+ KM    I PN  T+   + ACS L
Sbjct: 73  VFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSAL 132

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +   EGR+IH  + +L L+S++ + +AL+D Y+KCG ++DA ++F+   + D V+   ++
Sbjct: 133 KEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMI 192

Query: 331 VGFA-QNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            GF+   G  +E  +L V+M     ++ PN   +  VL       SL  GK+IH   ++ 
Sbjct: 193 SGFSLHEGSYDEVARLLVQMQN---DVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR 249

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALEL 446
            F  +  V  G++++Y KC  ++ + ++F  M   +N V+W++M+ A+       +ALEL
Sbjct: 250 GFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALEL 309

Query: 447 YEE---MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY----- 498
           + +   +K + +  + VT  +++  C+++  ++ G       T +H  + ++        
Sbjct: 310 FCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG-------TCLHCYAIKSGFVLDLMV 362

Query: 499 -ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
              ++ M  + G++  A  F   M ++ D + + A++     +G+SE G
Sbjct: 363 GNTLLSMYAKCGIINGAMRFFNEMDLR-DAVSFTAIISGYVQNGNSEEG 410


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 199/601 (33%), Positives = 315/601 (52%), Gaps = 50/601 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           +RLL + AK G+      L       F+    ++V++       WN++LS Y K   + +
Sbjct: 62  NRLLHLYAKSGNLSDARDL-------FDKMSRRDVFS-------WNAMLSAYSKSGNVED 107

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
              +FD M + D VS+NT+++GF  NG       FF R  E GF   D    ++ L AC 
Sbjct: 108 LRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSV-LHACS 166

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           +       K IH  +      E V V NAL   Y KCG+    R +F  M  +NV++W +
Sbjct: 167 QLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNS 226

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG +QN   E   KLF +M    + P+ +T                            
Sbjct: 227 MISGYLQNGQPETCTKLFCEMQSSGLMPDQVTI--------------------------- 259

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
                   S ++  Y +CG +++A + F   +E D V  T ++VG AQNG EE+A+ LF 
Sbjct: 260 --------SNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFR 311

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M+   +  D   +S+V+       SL  G+ +H   +      +  V++ L++MYSKCG
Sbjct: 312 EMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCG 371

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           +  D+  VF RM  RN +SWNSMI  +A++G   +AL LYEEM  E ++P ++TF+ +L 
Sbjct: 372 ETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLS 431

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC H GLV +G  +  S++++H ++P  +HY+C+++++GRAG + +A   I+ M  +P+ 
Sbjct: 432 ACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNC 491

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
           L+W  LL  C I+ D   G+ AA  LF   P +  PYI+++NIY+  GRWK+ A     M
Sbjct: 492 LIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLM 551

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           K   + K    SWIEI+ QVH FV +D+ H + + I+  L  L++ + + G+ P+   +L
Sbjct: 552 KNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVL 611

Query: 648 H 648
           H
Sbjct: 612 H 612



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 44/236 (18%)

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN----------- 439
           ++ F+ N L+++Y+K G+L D+  +F +M+ R+  SWN+M++A+++ GN           
Sbjct: 56  TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115

Query: 440 -------------GF-------KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
                        GF       +ALE +  M+ EG E TD T +S+LHACS +  + +G 
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           +    +     +      +  + +M  + G L +AR   +RM V  +V+ W +++     
Sbjct: 176 QIHGRIVAT-SLGESVFVWNALTNMYAKCGALDQARWLFDRM-VNKNVVSWNSMISGYLQ 233

Query: 540 HGDSEMGKYAAEKLFLA------QPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           +G  E       KLF         PD      +++  + C G   E  K  + +KE
Sbjct: 234 NGQPE----TCTKLFCEMQSSGLMPDQVTISNILSAYFQC-GYIDEACKTFREIKE 284


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 203/640 (31%), Positives = 329/640 (51%), Gaps = 58/640 (9%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+   K G        HA   + F+   + N++        +N+LLS       + 
Sbjct: 44  LNHLLTAYGKAGR-------HARARRVFDAMPHPNLFT-------YNALLSTLAHARLLS 89

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF------- 159
           +   LF  M  RD VS+N +++GF   G        +     L   Q D +         
Sbjct: 90  DMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVY-----LALLQADSSVRPSRITMS 144

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG------------------------- 194
           T++++A    + +L  K  HC +   G+     VG                         
Sbjct: 145 TMVMAASALGDRAL-GKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDS 203

Query: 195 ------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
                 N +IT   +C      R++F  M  R+ ITWT +++G  QN L  E L++F +M
Sbjct: 204 KNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM 263

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
               I  +  T+ S + AC  L AL +G+QIH  + +     ++ + SAL+DMYSKC S+
Sbjct: 264 RFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSI 323

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
           + A  +F      + +S T ++VG+ QNG  EEA+++F +M + GI+ D   + +V+   
Sbjct: 324 KLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSC 383

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
               SL  G Q H L + S       V+N L+ +Y KCG +ED+ ++F  M+  + VSW 
Sbjct: 384 ANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWT 443

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           ++++ +A+ G   + ++L+E+M  +GV+P  VTF+ +L ACS  G V KG  +  SM + 
Sbjct: 444 ALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKD 503

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           H I P  +HY C++D+  R+G L EA  FI++MP+ PD + W  LL AC + GD E+GK+
Sbjct: 504 HGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKW 563

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AAE L    P +PA Y+L+ ++++  G+W E A+  + M++  V KE G SWI+ + +VH
Sbjct: 564 AAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVH 623

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F  DD+ HP +  I+  L  L   M++EGY P+   +LH
Sbjct: 624 IFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLH 663



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 138/531 (25%), Positives = 240/531 (45%), Gaps = 101/531 (19%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLC-GYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           + +  +LSA  R+E   V+  +HC++     +     + N L+T+Y K G  +  R+VF 
Sbjct: 7   SQYAALLSAAARTE-PHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARARRVFD 65

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLF---------------------------VKM 248
            M   N+ T+ A++S L   +L  +   LF                           V++
Sbjct: 66  AMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRV 125

Query: 249 HLGL------INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +L L      + P+ +T  + VMA S L     G+Q H  + +L   ++  + S L+DMY
Sbjct: 126 YLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMY 185

Query: 303 SK-------------------------------CGSVEDAWQIFEFAEELDGVSMTVILV 331
           +K                               C  VE+A ++FE   + D ++ T ++ 
Sbjct: 186 AKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVT 245

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           GF QNG E EA+++F +M   GI ID     ++L   G  ++L  GKQIH+ II++ +  
Sbjct: 246 GFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDD 305

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N FV + L++MYSKC  ++ +  VF RM  +N +SW ++I  + ++G   +A+ ++ EM+
Sbjct: 306 NVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQ 365

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEF-------------------------LKSMT 486
            +G++P D T  S++ +C+++  + +G +F                           S+ 
Sbjct: 366 RDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 487 EVHRISPRAE-----HYACVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACS 538
           + HR+           +  +V    + G   E     E+M    VKPD + +  +L ACS
Sbjct: 426 DAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACS 485

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCSGRWKERAKAIKRM 587
             G  E G+     +       P    Y  M ++YS SG+ KE  + IK+M
Sbjct: 486 RAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 325/597 (54%), Gaps = 18/597 (3%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           +V D Y+ +S +LS  +       G  +HA  ++          Y +     + N L+  
Sbjct: 245 VVPDGYI-LSTVLSACSILPFLEGGKQIHAHILR----------YGLEMDASLMNVLIDS 293

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y+KC ++  A KLF+ MP ++ +SW T++SG+ +N         F    + G  + D  +
Sbjct: 294 YVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL-KPDMYA 352

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
            + IL++C           +H          +  V N+LI  Y KC   +  RKVF    
Sbjct: 353 CSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFA 412

Query: 219 VRNVITWTAVISGL----VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +V+ + A+I G      Q +L+E  L +F  M   LI P+ LT++S + A + L +L 
Sbjct: 413 AADVVLFNAMIEGYSRLGTQWELHE-ALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLG 471

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             +QIHG+++K  L  D+   SAL+D+YS C  ++D+  +F+  +  D V    +  G+ 
Sbjct: 472 LSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYV 531

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q    EEA+ LF+++  +    D    + ++   G   S+ LG++ H  ++K     NP+
Sbjct: 532 QQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPY 591

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + N L++MY+KCG  ED+ K F   A R+ V WNS+I+++A HG G KAL++ E+M  EG
Sbjct: 592 ITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEG 651

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           +EP  +TF+ +L ACSH GLV  G++  + M     I P  EHY C+V ++GRAG L +A
Sbjct: 652 IEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNKA 710

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           R  IE+MP KP  +VW++LL  C+  G+ E+ ++AAE   L+ P     + +++NIY+  
Sbjct: 711 RELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASK 770

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           G W E  K  +RMK  GV KE G SWI I K+VH F+  DK H +A+ I+ VL +LL
Sbjct: 771 GMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLL 827



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/505 (28%), Positives = 253/505 (50%), Gaps = 19/505 (3%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           + +RLL + A +   H    +H   I          V+ +   T + N L++ Y +   M
Sbjct: 46  EFARLLQLRASDDLLHYQNVVHGQII----------VWGLELDTYLSNILINLYSRAGGM 95

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKRSLELGFYQLDQASFTII 162
             A K+F+ MP R+ VSW+TMVS    +G ++     F  F R+ +    +   +SF   
Sbjct: 96  VYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQA 155

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            S  D     +V ++   LV   G++ +V VG  LI  Y K G+    R VF  +  ++ 
Sbjct: 156 CSGLDGRGRWMVFQLQSFLVK-SGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKST 214

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +TWT +ISG V+       L+LF ++    + P+     + + ACS L  L  G+QIH  
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAH 274

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + +  L+ D  + + L+D Y KCG V  A ++F      + +S T +L G+ QN   +EA
Sbjct: 275 ILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEA 334

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           M+LF  M K G++ D    S++L       +LG G Q+H+  IK++  ++ +V N LI+M
Sbjct: 335 MELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDM 394

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF---KALELYEEMKLEGVEPTD 459
           Y+KC  L D+ KVF   A  + V +N+MI  ++R G  +   +AL ++ +M+   + P+ 
Sbjct: 395 YAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSL 454

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +TF+SLL A + +  +    +    M + + ++      + ++D+      L ++R   +
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFK-YGLNLDIFAGSALIDVYSNCYCLKDSRLVFD 513

Query: 520 RMPVKPDVLVWQALLGACSIHGDSE 544
            M VK D+++W ++        ++E
Sbjct: 514 EMKVK-DLVIWNSMFAGYVQQSENE 537


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 184/474 (38%), Positives = 283/474 (59%), Gaps = 3/474 (0%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K+IH L+    + +++ + N L+  Y KCG     RK+F EM  R+V+TWTA+I+G  Q+
Sbjct: 35  KIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQH 94

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA--LCEGRQIHGILWKLALQSDLC 293
              ++ L L  +M    + PN  T  S + A SG+ +  + +GRQ+HG+  +    S++ 
Sbjct: 95  DRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVY 154

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           +  A++DMY++C  +E+A  IF+     + VS   ++ G+A+ G  ++A  LF  M++  
Sbjct: 155 VSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLREN 214

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           ++      S+VL       SL  GK +H+L+IK       FV N L++MY+K G +ED+ 
Sbjct: 215 VKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAK 274

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           KVF R+A R+ VSWNSM+  +++HG G  AL+ +EEM    + P D+TFL +L ACSH G
Sbjct: 275 KVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAG 334

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           L+++G  +   M + + + P+  HY  +VD++GRAG L  A  FI  MP+KP   VW AL
Sbjct: 335 LLDEGRHYF-DMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGAL 393

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC +H + E+G YAAE +F      P  ++L+ NIY+ +GRW + AK  K MKE GV 
Sbjct: 394 LGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVK 453

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           KE   SW+E+E +VH FV DD  HPQ   IH +  ++   + + GYVP+   +L
Sbjct: 454 KEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVL 507



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 183/368 (49%), Gaps = 12/368 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL+ Y KC  +  A KLFD+M  RD V+W  +++G+ ++             L +
Sbjct: 51  VMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRI 110

Query: 150 GFY--QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           G    Q   AS     S    +++ L  + +H L    GY+  V V  A++  Y +C   
Sbjct: 111 GLKPNQFTLASLLKAASGVGSTDV-LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHL 169

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              + +F  M  +N ++W A+I+G  +    ++   LF  M    + P   TY S + AC
Sbjct: 170 EEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCAC 229

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + + +L +G+ +H ++ K   +    + + L+DMY+K GS+EDA ++F+   + D VS  
Sbjct: 230 ASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWN 289

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +L G++Q+G  + A+Q F +M++    I PN ++ +  +     +  L +  H   +  
Sbjct: 290 SMLTGYSQHGLGKVALQRFEEMLRT--RIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK 347

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN----G 440
            +   P +++   ++++  + G L+ +I+  S M  + + + W +++ A   H N    G
Sbjct: 348 KYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGG 407

Query: 441 FKALELYE 448
           + A  ++E
Sbjct: 408 YAAECIFE 415


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 321/575 (55%), Gaps = 17/575 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I N+L++ Y K  ++ ++  L      RD V+WNT++S   +N +F     +  R + 
Sbjct: 232 SFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYL-REMV 290

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS 207
           L   + D  + + +L AC   E+    K +H      G  +E   VG+AL+  Y  C   
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--LGLINPNSLTYLSSVM 265
            SG +VF  M  R +  W A+I+G  QN+  EE L LF++M    GL+  NS T    V 
Sbjct: 351 LSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLL-ANSTTMAGVVP 409

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC    A  +   IHG + K  L  D  +++ALMDMYS+ G ++ A +IF   E+ D V+
Sbjct: 410 ACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVT 469

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMV---------KAGIEIDPNMVS--AVLGVFGVDTSL 374
              I+ G+  +   E+A+ +  KM           + + + PN ++   +L      ++L
Sbjct: 470 WNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSAL 529

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH+  IK++  ++  V + L++MY+KCG L+ S KVF ++  RN ++WN ++ A+
Sbjct: 530 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAY 589

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             HGN   A+++   M ++GV+P +VTF+S+  ACSH G+VN+G++   +M + + + P 
Sbjct: 590 GMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPS 649

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL-VWQALLGACSIHGDSEMGKYAAEKL 553
           ++HYACVVD++GRAG + EA   I  +P   D    W +LLGAC IH + E+G+ AA+ L
Sbjct: 650 SDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNL 709

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P+  + Y+L+ANIYS +G W +  +  + MK  GV KE G SWIE   +VH FV  
Sbjct: 710 IQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAG 769

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HPQ++ + G L  L   M  EGY+P+   +LH
Sbjct: 770 DSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLH 804



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 255/521 (48%), Gaps = 34/521 (6%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DN+     LL   A      LG  +HA   K          Y V + TV  N+L++ Y K
Sbjct: 92  DNFA-FPALLKAVADLQDMDLGKQIHAHVYKFG--------YGVDSVTVA-NTLVNLYRK 141

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C       K+FD +  R+ VSWN+++S      +++M    F+  L+     ++ +SFT+
Sbjct: 142 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---EDVEPSSFTL 198

Query: 162 ILSACDRSELS-----LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +  A   S        L+ K +H      G E    + N L+  Y K G  +S + + G 
Sbjct: 199 VSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGS 257

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW  V+S L QN+ + E L+   +M L  + P+  T  S + ACS L+ L  G
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317

Query: 277 RQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +++H    K  +L  +  + SAL+DMY  C  V    ++F+   +        ++ G+AQ
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQ 377

Query: 336 NGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           N ++EEA+ LF++M + AG+  +   ++ V+       +    + IH  ++K     + F
Sbjct: 378 NEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRF 437

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA---RHGNGFKALELYEEMK 451
           V N L++MYS+ G ++ + ++F +M  R+ V+WN++I  +    RH +    L   + ++
Sbjct: 438 VQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILE 497

Query: 452 LEGVE--------PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
            +  E        P  +T +++L +C+ +  + KG E + +    + ++      + +VD
Sbjct: 498 RKASERASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVD 556

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G L  +R   +++P++ +V+ W  ++ A  +HG+S+
Sbjct: 557 MYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQ 596



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 132/261 (50%), Gaps = 5/261 (1%)

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  ++   V++ L  E +  ++ M +  I P++  + + + A + LQ +  G+QIH  ++
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 285 KLALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           K     D + + + L+++Y KCG     +++F+   E + VS   ++         E A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 344 QLFVKMVKAGIEIDP-NMVSAVLGV--FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           + F  M+   +E     +VS  L    F +   L +GKQ+H+  ++     N F+ N L+
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLV 239

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY K G L  S  +      R+ V+WN+++++  ++    +ALE   EM LEGVEP   
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 461 TFLSLLHACSHVGLVNKGMEF 481
           T  S+L ACSH+ ++  G E 
Sbjct: 300 TISSVLPACSHLEMLRTGKEL 320


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 326/604 (53%), Gaps = 18/604 (2%)

Query: 41   LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            +D++   + LLS  A      +G   H+  IK            +     + N+L+  Y 
Sbjct: 426  IDDFT-FTSLLSTCAASHDLEMGSQFHSIIIKK----------KLAKNLFVGNALVDMYA 474

Query: 101  KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
            KC  + +A ++F+ M  RD V+WNT++  ++++      F  FKR    G    D A   
Sbjct: 475  KCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVS-DGACLA 533

Query: 161  IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
              L AC         K +HCL   CG + ++  G++LI  Y KCG     RKVF  +   
Sbjct: 534  STLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEW 593

Query: 221  NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
            +V++  A+I+G  QN L EE + LF +M    +NP+ +T+ + V AC   ++L  G Q H
Sbjct: 594  SVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFH 652

Query: 281  GILWKLALQSD-LCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGF 338
            G + K    S+   +  +L+ MY     + +A  +F E +     V  T ++ G +QNGF
Sbjct: 653  GQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGF 712

Query: 339  EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             EEA++ + +M   G+  D      VL V  V +SL  G+ IHSLI       +   +N 
Sbjct: 713  YEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNT 772

Query: 399  LINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MY+KCGD++ S +VF  M  R N VSWNS+I  +A++G    AL++++ M+   + P
Sbjct: 773  LIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMP 832

Query: 458  TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             ++TFL +L ACSH G V+ G +  + M   + I  R +H AC+VD++GR G L EA  F
Sbjct: 833  DEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDF 892

Query: 518  IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
            IE   +KPD  +W +LLGAC IHGD   G+ +AEKL   +P + + Y+L++NIY+  G W
Sbjct: 893  IEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCW 952

Query: 578  KERAKAIKR-MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
             E+A A+++ M++ GV K  G SWI++E++ H F   DK H +   I   L +L  LM D
Sbjct: 953  -EKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMKD 1011

Query: 637  EGYV 640
            +  V
Sbjct: 1012 DAVV 1015



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 153/531 (28%), Positives = 258/531 (48%), Gaps = 40/531 (7%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
            +  LG  +HA  IK        N+Y       + +SL+S Y KC++M  A K+F+ +  
Sbjct: 341 ANLDLGLVVHAEAIKLGLA---SNIY-------VGSSLVSMYSKCEKMEAAAKVFEALEE 390

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           ++ V WN M+ G+  NGE       F      G Y +D  +FT +LS C  S    +   
Sbjct: 391 KNDVFWNAMIRGYAHNGESHKVMELFMDMKSSG-YNIDDFTFTSLLSTCAASHDLEMGSQ 449

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
            H ++      + + VGNAL+  Y KCG+    R++F  M  R+ +TW  +I   VQ++ 
Sbjct: 450 FHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDEN 509

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E   LF +M+L  I  +     S++ AC+ +  L +G+Q+H +  K  L  DL   S+
Sbjct: 510 ESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSS 569

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMYSKCG ++DA ++F    E   VSM  ++ G++QN   EEA+ LF +M+  G+   
Sbjct: 570 LIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPS 628

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVF 416
               + ++       SL LG Q H  I K  F+S   ++   L+ MY     + ++  +F
Sbjct: 629 EITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALF 688

Query: 417 SRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           S + +P++ V W  M++  +++G   +AL+ Y+EM+ +GV P   TF+++L  CS     
Sbjct: 689 SELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS----- 743

Query: 476 NKGMEFLKSMTEVHRISPRAEHYA---------CVVDMVGRAGLLIEARSFIERMPVKPD 526
                 L S+ E   I     H A          ++DM  + G +  +    + M  + +
Sbjct: 744 -----VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSN 798

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           V+ W +L+   + +G +E     A K+F +   S   P     +  + +CS
Sbjct: 799 VVSWNSLINGYAKNGYAE----DALKIFDSMRQSHIMPDEITFLGVLTACS 845



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 242/519 (46%), Gaps = 63/519 (12%)

Query: 11  NSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASF 70
           NS     SS+  P   K+++   S     +  N    S +LS  A+E +   G  +H S 
Sbjct: 129 NSMLSMYSSIGKP--GKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           IK            +   +    +L+  Y KCD++ +A ++F+ +   +TV W  + SG+
Sbjct: 187 IKM----------GLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGY 236

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
           ++ G  +     F+R  + G ++ D  +F  +                            
Sbjct: 237 VKAGLPEEAVLVFERMRDEG-HRPDHLAFVTV---------------------------- 267

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
                  I +Y + G     R +FGEM   +V+ W  +ISG  +       ++ F  M  
Sbjct: 268 -------INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRK 320

Query: 251 GLINPNSLTYLSSVMACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
             +     T L SV++  G+ A L  G  +H    KL L S++ + S+L+ MYSKC  +E
Sbjct: 321 SSVKSTRST-LGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
            A ++FE  EE + V    ++ G+A NG   + M+LF+ M  +G  ID    +++L    
Sbjct: 380 AAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCA 439

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
               L +G Q HS+IIK     N FV N L++MY+KCG LED+ ++F RM  R++V+WN+
Sbjct: 440 ASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNT 499

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           +I ++ +  N  +A +L++ M L G+        S L AC+HV  + +G        +VH
Sbjct: 500 IIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQG-------KQVH 552

Query: 490 RIS-----PRAEHY-ACVVDMVGRAGLLIEARSFIERMP 522
            +S      R  H  + ++DM  + G++ +AR     +P
Sbjct: 553 CLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 232/452 (51%), Gaps = 10/452 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           ++++ Y++  ++++A  LF +M   D V+WN M+SG  + G   +   +F  ++     +
Sbjct: 266 TVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYF-FNMRKSSVK 324

Query: 154 LDQASFTIILSACD---RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +++   +LSA       +L LV   +H      G    + VG++L++ Y KC    + 
Sbjct: 325 STRSTLGSVLSAIGIVANLDLGLV---VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAA 381

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            KVF  +  +N + W A+I G   N    + ++LF+ M     N +  T+ S +  C+  
Sbjct: 382 AKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAAS 441

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G Q H I+ K  L  +L + +AL+DMY+KCG++EDA QIFE   + D V+   I+
Sbjct: 442 HDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+  E EA  LF +M   GI  D   +++ L        L  GKQ+H L +K    
Sbjct: 502 GSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD 561

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +    + LI+MYSKCG ++D+ KVFS +   + VS N++IA ++++ N  +A+ L++EM
Sbjct: 562 RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAG 509
              GV P+++TF +++ AC     +  G +F   +T+    S   E+    ++ M   + 
Sbjct: 621 LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITK-RGFSSEGEYLGISLLGMYMNSR 679

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + EA +    +     +++W  ++   S +G
Sbjct: 680 GMTEACALFSELSSPKSIVLWTGMMSGHSQNG 711



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/444 (28%), Positives = 209/444 (47%), Gaps = 39/444 (8%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++  Y KC Q+  A K FD +  +D  +WN+M+S +   G+       F    E   +
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIF 157

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ +F+I+LS C R       + IHC +   G E     G AL+  Y KC   S  R+
Sbjct: 158 P-NKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARR 216

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +   N + WT + SG V+  L EE + +F +M      P+ L +++          
Sbjct: 217 VFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVT---------- 266

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
                                    +++ Y + G ++DA  +F      D V+  V++ G
Sbjct: 267 -------------------------VINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISG 301

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             + G E  A++ F  M K+ ++   + + +VL   G+  +L LG  +H+  IK    SN
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASN 361

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V + L++MYSKC  +E + KVF  +  +N V WN+MI  +A +G   K +EL+ +MK 
Sbjct: 362 IYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKS 421

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G    D TF SLL  C+    +  G +F  S+    +++        +VDM  + G L 
Sbjct: 422 SGYNIDDFTFTSLLSTCAASHDLEMGSQF-HSIIIKKKLAKNLFVGNALVDMYAKCGALE 480

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           +AR   ERM  + +V  W  ++G+
Sbjct: 481 DARQIFERMCDRDNV-TWNTIIGS 503



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 164/372 (44%), Gaps = 42/372 (11%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           + K +H    + G + E  +GNA++  Y KC   S   K F  +  ++V  W +++S   
Sbjct: 78  IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYS 136

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
                 + L+ FV +    I PN  T+   +  C+    +  GRQIH  + K+ L+ +  
Sbjct: 137 SIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSY 196

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
              AL+DMY+KC  + DA ++FE+  + + V  T +  G+ + G  EEA+ +F +M   G
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
               P+ ++ V                                  +IN Y + G L+D+ 
Sbjct: 257 HR--PDHLAFVT---------------------------------VINTYIRLGKLKDAR 281

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F  M+  + V+WN MI+   + G    A+E +  M+   V+ T  T  S+L A   V 
Sbjct: 282 LLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVA 341

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            ++ G   L    E  ++   +  Y  + +V M  +   +  A    E +  K DV  W 
Sbjct: 342 NLDLG---LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVF-WN 397

Query: 532 ALLGACSIHGDS 543
           A++   + +G+S
Sbjct: 398 AMIRGYAHNGES 409



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 106/202 (52%), Gaps = 1/202 (0%)

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL  G+ +H     L + S+  + +A++D+Y+KC  V  A + F+F E+ D  +   +L 
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFLEK-DVTAWNSMLS 133

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            ++  G   + ++ FV + +  I  +    S VL     +T++  G+QIH  +IK     
Sbjct: 134 MYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLER 193

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N +    L++MY+KC  + D+ +VF  +   N+V W  + + + + G   +A+ ++E M+
Sbjct: 194 NSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 452 LEGVEPTDVTFLSLLHACSHVG 473
            EG  P  + F+++++    +G
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLG 275


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 202/600 (33%), Positives = 323/600 (53%), Gaps = 12/600 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           ++ + A++G   LG   H   +K            +     + +SLL  Y KC  +  A 
Sbjct: 305 VIPLCARQGEVRLGMVFHGLALK----------LGLCGELKVNSSLLDMYSKCGYLCEAR 354

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD    ++ +SWN+M+ G+ ++ +F   F   ++       ++++ +   +L  C+  
Sbjct: 355 VLFDTNE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEE 413

Query: 170 ELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
              L  K IH      G+ + +  V NA +  Y KCGS      VF  M  + V +W A+
Sbjct: 414 IQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNAL 473

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G VQN    + L L++ M    + P+  T  S + AC+ L++L  G++IHG + +   
Sbjct: 474 IGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF 533

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + D  I  +L+ +Y +CG +  A   F+  EE + V    ++ GF+QN F  +A+ +F +
Sbjct: 534 ELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQ 593

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M+ + I  D   +   LG     ++L LGK++H   +KS  T + FV   LI+MY+KCG 
Sbjct: 594 MLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGC 653

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +E S  +F R+  +  V+WN +I  +  HG+G KA+EL++ M+  G  P  VTF++LL A
Sbjct: 654 MEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTA 713

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           C+H GLV +G+E+L  M  +  I P+ EHYACVVDM+GRAG L EA   +  +P KPD  
Sbjct: 714 CNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSR 773

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           +W +LL +C  + D ++G+  A KL    PD    Y+L++N Y+  G+W E  K  +RMK
Sbjct: 774 IWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMK 833

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           E+G+ K+ G SWIEI  +V  F+V D+   Q+  I     EL + +   GY P+   +LH
Sbjct: 834 EIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLH 893



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 260/520 (50%), Gaps = 25/520 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG ++H   +KT           V +   + N+L++ Y K   + +AVK+FD MP R+ V
Sbjct: 214 LGEAVHGFALKT----------KVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLV 263

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSL--ELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           SWN+++   L NG F+  +G FK  L  + G    D A+   ++  C R     +  + H
Sbjct: 264 SWNSVMYACLENGVFEESYGLFKGLLNGDEGLMP-DVATMVTVIPLCARQGEVRLGMVFH 322

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L    G   E+ V ++L+  Y KCG     R +F +   +NVI+W ++I G  +++ + 
Sbjct: 323 GLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFR 381

Query: 240 EGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESA 297
              +L  KM +   +  N +T L+ +  C       + ++IHG   +   +QSD  + +A
Sbjct: 382 GAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANA 441

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
            +  Y+KCGS+  A  +F   E     S   ++ G  QNGF  +A+ L++ M  +G+E D
Sbjct: 442 FVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPD 501

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++++L       SL  GK+IH  ++++ F  + F+   L+++Y +CG +  +   F 
Sbjct: 502 LFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFD 561

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  +N V WN+MI  F+++   F AL+++ +M    + P +++ +  L ACS V  +  
Sbjct: 562 NMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRL 621

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G E      + H ++  +     ++DM  + G + ++++  +R+ +K +V  W  L+   
Sbjct: 622 GKELHCFAVKSH-LTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEV-TWNVLITGY 679

Query: 538 SIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
            IHG    G+ A E LF +  ++   P     +A + +C+
Sbjct: 680 GIHGH---GRKAIE-LFKSMQNAGFRPDSVTFIALLTACN 715



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 240/502 (47%), Gaps = 28/502 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I  LL +  +  +  +G  +H +FI T   F N          V+   L++ Y  CD   
Sbjct: 96  IGLLLQLCGEYKNIEIGRKIH-NFISTSPHFQND--------VVLITRLVTMYSICDSPY 146

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           ++  +F+    ++   WN ++SG+LRN  F      F   + L  +  D  +   ++ AC
Sbjct: 147 DSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKAC 206

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  + + +H          +V VGNALI  Y K G   S  KVF +M  RN+++W 
Sbjct: 207 VGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWN 266

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLIN------PNSLTYLSSVMACSGLQALCEGRQIH 280
           +V+   ++N ++EE   LF     GL+N      P+  T ++ +  C+    +  G   H
Sbjct: 267 SVMYACLENGVFEESYGLFK----GLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFH 322

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
           G+  KL L  +L + S+L+DMYSKCG + +A  +F+   E + +S   ++ G++++    
Sbjct: 323 GLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFR 381

Query: 341 EAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNG 398
            A +L  KM ++  ++++   +  VL V   +      K+IH   ++  F  S+  V N 
Sbjct: 382 GAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANA 441

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
            +  Y+KCG L  +  VF  M  +   SWN++I    ++G   KAL+LY  M+  G+EP 
Sbjct: 442 FVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPD 501

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV--VDMVGRAGLLIEARS 516
             T  SLL AC+ +  ++ G E   SM    R     + + C+  V +  + G ++ A+ 
Sbjct: 502 LFTIASLLSACARLKSLSCGKEIHGSML---RNGFELDEFICISLVSLYVQCGKILLAKL 558

Query: 517 FIERMPVKPDVLVWQALLGACS 538
           F + M  K +++ W  ++   S
Sbjct: 559 FFDNMEEK-NLVCWNTMINGFS 579


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 203/578 (35%), Positives = 325/578 (56%), Gaps = 18/578 (3%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LH+  +K      ++NV++        ++LL  Y KC ++ +   +F  MP 
Sbjct: 108 GKLKLGQQLHSVMLKVGL---SENVFS-------GSALLDMYAKCGRVDDGYVVFQSMPE 157

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           R+ VSWNT+V+ + R G+ DM F +    +EL   ++D  + + +L+  D +    ++  
Sbjct: 158 RNYVSWNTLVASYSRVGDCDMAF-WVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQ 216

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRVRNVITWTAVISGLVQNQ 236
           +HC +   G E   TV NA IT+Y +C S     +VF G +  R+++TW +++   + ++
Sbjct: 217 LHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHE 276

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             +   K+F+ M      P++ TY   V ACS  +    G+ +HG++ K  L + + + +
Sbjct: 277 KEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSN 336

Query: 297 ALMDMY----SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
           AL+ MY     +C  +EDA +IF   +  D  +   IL G+ Q G  E+A++LF++M   
Sbjct: 337 ALISMYIRFNDRC--MEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCL 394

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
            IEID    SAV+       +L LG+Q H L +K  F +N +V + LI MYSKCG +ED+
Sbjct: 395 VIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDA 454

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            K F   +  N++ WNS+I  +A+HG G  AL+L+  MK   V+   +TF+++L ACSH 
Sbjct: 455 RKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHN 514

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GLV +G  F++SM     I PR EHYAC +D+ GRAG L +A + +E MP +PD +V + 
Sbjct: 515 GLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKT 574

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LLGAC   GD E+    A+ L   +P+    Y++++ +Y     W E+A   + M+E GV
Sbjct: 575 LLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGV 634

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            K  G SWIE++  VH+F  +D  HPQ + I+ +L +L
Sbjct: 635 KKVPGWSWIEVKNNVHAFNAEDHSHPQCEEIYILLQQL 672



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 231/462 (50%), Gaps = 16/462 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF---GFFKRSLEL 149
           N+L++ Y KC ++ +A ++FD+MP RDTVSWN ++S F  +G+ D  +   G  +RS   
Sbjct: 32  NNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRST-- 89

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +  D  +F  IL          + + +H ++   G  E V  G+AL+  Y KCG    
Sbjct: 90  --HAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDD 147

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GL-INPNSLTYLSSVMAC 267
           G  VF  M  RN ++W  +++   +    +    +   M L G+ I+  +++ L +++  
Sbjct: 148 GYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDN 207

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-DGVSM 326
           +    L    Q+H  + K  L+    + +A +  YS+C S++DA ++F+ A    D V+ 
Sbjct: 208 AMFYKL--TMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDGAVLCRDLVTW 265

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L  +  +  E+ A ++F+ M   G E D    + ++G   V      GK +H L+IK
Sbjct: 266 NSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIK 325

Query: 387 SDFTSNPFVNNGLINMYSKCGD--LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
               ++  V+N LI+MY +  D  +ED++++F  M  ++  +WNS++A + + G    AL
Sbjct: 326 RGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCCTWNSILAGYVQVGLSEDAL 385

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L+ +M+   +E    TF +++ +CS +  +  G +F     +V      +   + ++ M
Sbjct: 386 RLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKV-GFDTNSYVGSSLIFM 444

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             + G++ +AR   E    K + +VW +++   + HG   + 
Sbjct: 445 YSKCGIIEDARKSFEATS-KDNAIVWNSIIFGYAQHGQGNIA 485



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 147/293 (50%), Gaps = 1/293 (0%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           HC     G   +    N LITSY KC   +S  +VF EM  R+ ++W A+IS    +   
Sbjct: 16  HCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDL 75

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           +   +L   M       +S T+ S +   + +  L  G+Q+H ++ K+ L  ++   SAL
Sbjct: 76  DTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSAL 135

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KCG V+D + +F+   E + VS   ++  +++ G  + A  +   M   G+EID 
Sbjct: 136 LDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDD 195

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS- 417
             VS +L +        L  Q+H  I+K        V N  I  YS+C  L+D+ +VF  
Sbjct: 196 GTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQDAERVFDG 255

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  R+ V+WNSM+ A+  H     A +++ +M+  G EP   T+  ++ ACS
Sbjct: 256 AVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACS 308



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 30/304 (9%)

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           KL   +D    + L+  Y+KC  +  A Q+F+     D VS   I+  FA +G  +   Q
Sbjct: 21  KLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQ 80

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           L   M ++    D     ++L        L LG+Q+HS+++K   + N F  + L++MY+
Sbjct: 81  LLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYA 140

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG ++D   VF  M  RN VSWN+++A+++R G+   A  +   M+LEGVE  D T   
Sbjct: 141 KCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSP 200

Query: 465 LLHACS-----------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           LL               H  +V  G+E   ++     I+  +E   C          L +
Sbjct: 201 LLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNA-TITAYSE--CCS---------LQD 248

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANI 570
           A    +   +  D++ W ++LGA  +H   ++    A K+FL   +    P  Y     +
Sbjct: 249 AERVFDGAVLCRDLVTWNSMLGAYLMHEKEDL----AFKVFLDMQNFGFEPDAYTYTGIV 304

Query: 571 YSCS 574
            +CS
Sbjct: 305 GACS 308


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 318/563 (56%), Gaps = 15/563 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + ++L+    +   + +A K+FD +  +  V W  ++S +++    +     F   LE 
Sbjct: 189 AVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLED 248

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF + D+ + + ++SAC       +   +H L    G+  +  V   L+  Y K     +
Sbjct: 249 GF-EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 210 ---GRKVFGEMRVRNVITWTAVISGLVQNQLYEEG-LKLFVKMHLGLINPNSLTYLSSVM 265
                KVF  MR  +VI+WTA+ISG VQ+ + E   + LF +M    I PN +TY S + 
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILK 367

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ +     GRQ+H  + K    +   + +AL+ MY++ G +E+A ++F    E   +S
Sbjct: 368 ACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIS 427

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
                        E     L  ++ +  + I  +  ++++        L  G+Q+H++ +
Sbjct: 428 CIT----------EGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTL 477

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+ F S+ FV+N L++MYS+CG LED+ + F+ +  RN +SW SMI+  A+HG   +AL 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+ +M L GV+P DVT++++L ACSHVGLV +G E+ +SM   H + PR EHYAC+VD++
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            R+GL+ EA  FI  MP+K D LVW+ LLGAC  H + E+G+ AA+ +   +P  PAPY+
Sbjct: 598 ARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYV 657

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+ +G W E A+    M++  ++KETG+SW+E+E   H F   D  HP+A  I+G
Sbjct: 658 LLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYG 717

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L  L+  +   GYVP+   +LH
Sbjct: 718 KLDTLVGEIKGMGYVPDTSIVLH 740



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 146/507 (28%), Positives = 251/507 (49%), Gaps = 31/507 (6%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D+S LL+ +A+ G   LG +LH   ++  +  D           V+ NSLL+ Y +C  +
Sbjct: 50  DVSALLAAAARAGDLRLGRALHRRLLRG-DLLDRD--------AVVANSLLTLYSRCGAV 100

Query: 106 RNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
            +A  +FD M  +RD VSW  M S   RNG            LE G    +  +   +  
Sbjct: 101 ASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLP-NAYTLCAVAH 159

Query: 165 ACDRSEL-SLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           AC   EL  LV  ++  LV+  G +  ++ VG+ALI    + G  +S RKVF  +  + V
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTV 219

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           + WT +IS  VQ +  EE +++F+        P+  T  S + AC+ L ++  G Q+H +
Sbjct: 220 VVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSL 279

Query: 283 LWKLALQSDLCIESALMDMYSKCG---SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
             ++   SD C+   L+DMY+K     +++ A ++FE   + D +S T ++ G+ Q+G +
Sbjct: 280 ALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQ 339

Query: 340 E-EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           E + M LF +M+   I+ +    S++L      +    G+Q+H+ +IKS+  +   V N 
Sbjct: 340 ENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNA 399

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY++ G +E++ +VF+++  R      SMI+      +      L   +    +  +
Sbjct: 400 LVSMYAESGCMEEARRVFNQLYER------SMISCITEGRDA----PLDHRIGRMDMGIS 449

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSF 517
             TF SL+ A + VG++ KG + L +MT              +V M  R G L +A RSF
Sbjct: 450 SSTFASLISAAASVGMLTKGQQ-LHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSF 508

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
            E      +V+ W +++   + HG +E
Sbjct: 509 NELK--DRNVISWTSMISGLAKHGYAE 533



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 13/224 (5%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           P+ VSA+L        L LG+ +H  +++ D    +  V N L+ +YS+CG +  +  VF
Sbjct: 48  PSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVF 107

Query: 417 SRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
             M   R+ VSW +M +  AR+G   ++L L  EM   G+ P   T  ++ HAC    L 
Sbjct: 108 DGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELY 167

Query: 476 NKGMEFLKSMTEVHRISPRAEHYA---CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
              +     +  VH++       A    ++DM+ R G L  AR   + + ++  V+VW  
Sbjct: 168 --CLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGL-IEKTVVVWTL 224

Query: 533 LLGACSIHGDSEMGKYAAEKL--FLAQPDSPAPYILMANIYSCS 574
           L+   S +   E  + A E    FL     P  Y + + I +C+
Sbjct: 225 LI---SRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACT 265


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 333/616 (54%), Gaps = 22/616 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS-------LLSFY 99
           +  +L    +   F L  + HA F           V      T  W +       L+  +
Sbjct: 134 LGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMF 193

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            +   +  A K+F+ +  R  V W  M++ +++ G        F   LE GF + D  + 
Sbjct: 194 ARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGF-EPDGYTM 252

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS---GRKVFGE 216
           + ++SAC     + + + +H LV   G   +  V   L+  Y K     S    RKVF  
Sbjct: 253 SSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKR 312

Query: 217 MRVRNVITWTAVISGLVQNQLYEE-GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           M   NV++WTA+ISG VQ    E   ++L  +M    I PN LTY S + AC+ L     
Sbjct: 313 MPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDS 372

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           GRQIH  + K ++ +   + +AL+ MY++ G +E+A + F+   E + +S +       +
Sbjct: 373 GRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSS---DIGE 429

Query: 336 NGFEEEAMQLFVKMVKAGIEID--PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            G    +    ++ +  G+      +++SA   V G+ T    G+Q+H+L IK+ F S+ 
Sbjct: 430 TGRSNASWSSQIESMDVGVSTFTFASLLSAAATV-GLPTK---GQQLHALSIKTGFESDK 485

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            ++N L++MYS+CG L+D+ + F  M    N +SW S+I+A A+HG+  +AL L+ +M L
Sbjct: 486 GISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMIL 545

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            GV+P DVT++++L ACSHVGLV +G E+ +SM + HR+ PR EHYAC+VD++ R+GL+ 
Sbjct: 546 SGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQ 605

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA  FI  MP K D LVW+ LLGAC  + + E+G+ AA  +   +P  PAPY+L++N+Y+
Sbjct: 606 EALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYA 665

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             G W E A+    M+   + KETG+SW+ +   +H F   D  HP+A  I+  LA L+R
Sbjct: 666 HGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIR 725

Query: 633 LMIDEGYVPNKRFILH 648
            + D GYVP+   +LH
Sbjct: 726 EIKDIGYVPDTSIVLH 741



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 151/539 (28%), Positives = 256/539 (47%), Gaps = 30/539 (5%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDT 120
           LG +LH   + T E  D           ++ NSLL+ Y KC  +R A ++FD M  +RD 
Sbjct: 61  LGRALHRRLLGT-EVLDAD--------ALVANSLLTMYSKCGHVRAARRVFDGMRGLRDL 111

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS--ACDRSEL--SLVSK 176
           VSW  M     RNG            LE G   L   +FT+  +  AC   EL  S    
Sbjct: 112 VSWTAMAFCLTRNGAEQEALVLLGEMLESG---LRPNAFTLCAAAHACFPGELFRSSGGT 168

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           ++   +    +  +V+VG ALI  + + G   + RKVF  +  R V+ WT +I+  VQ  
Sbjct: 169 VLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGG 228

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              + ++LF+ M      P+  T  S V AC+   +   G+Q+H ++ +L L SD C+  
Sbjct: 229 CAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSC 288

Query: 297 ALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE-EAMQLFVKMVKA 352
            L+DMY+K     S+E A ++F+     + +S T ++ G+ Q G +E  A++L  +M+  
Sbjct: 289 GLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNE 348

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
            IE +    S++L      +    G+QIH+ ++K+   +   V N L++MY++ G +E++
Sbjct: 349 SIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEA 408

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            K F ++  RN +S +S I    R    + +     +++   V  +  TF SLL A + V
Sbjct: 409 RKAFDQLYERNLLSTSSDIGETGRSNASWSS-----QIESMDVGVSTFTFASLLSAAATV 463

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GL  KG +      +    S +    + +V M  R G L +A    + M    +V+ W +
Sbjct: 464 GLPTKGQQLHALSIKTGFESDKGISNS-LVSMYSRCGYLDDACRAFDEMEDDHNVISWTS 522

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRMKE 589
           ++ A + HG +E        + L+    P     +A + +CS  G  KE  +  + M++
Sbjct: 523 IISALAKHGHAERALSLFHDMILSGV-KPNDVTYIAVLSACSHVGLVKEGKEYFRSMQK 580


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/486 (37%), Positives = 286/486 (58%), Gaps = 1/486 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +++AC R      ++ IH  +    +   V + N+LI  Y KCG+ +  R+VF  M  R+
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           + +WT++I+G  QN + +E L L   M  G   PN  T+ S + A     +   G QIH 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K     D+ + SAL+DMY++CG ++ A  +F+  E  +GVS   ++ GFA+ G  E 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            + +F +M + G E      S+V        +L  GK +H+ +IKS    + FV N +++
Sbjct: 250 TLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILD 309

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G + D+ KVF R+  ++ V+WNSM+ AFA++G G +A+  +EEM+  GV    +T
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQIT 369

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FLS+L ACSH GLV +G ++   M E + + P  +HY  VVD++GRAGLL +A  FI +M
Sbjct: 370 FLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP   VW ALLG+C +H ++++G++AA+ +F   PD   P +L+ NIY+ +G+W   A
Sbjct: 429 PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAA 488

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +  K MK  GV KE   SW+EIE  VH FV +D  HP+++ I+    E+   +   GYVP
Sbjct: 489 RVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVP 548

Query: 642 NKRFIL 647
           N  ++L
Sbjct: 549 NTDYVL 554



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 163/283 (57%), Gaps = 4/283 (1%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y S + AC+  ++L + R IH  L        + ++++L+ +Y KCG+V DA ++F+   
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D  S T ++ G+AQN   +EA+ L   M++   + +    +++L   G   S G+G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH+L +K D+  + +V + L++MY++CG ++ +I VF ++  +N VSWN++IA FAR G+
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHY 498
           G   L ++ EM+  G E T  T+ S+  A + +G + +G      M +   R+S    + 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN- 305

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             ++DM  ++G +I+AR   +R+  K DV+ W ++L A + +G
Sbjct: 306 -TILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 211/446 (47%), Gaps = 31/446 (6%)

Query: 23  PFITKIIQD---PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT---FEP 76
           P +T  + D   P ++++ ++ D       L S+ A+E      P L+ S I     +  
Sbjct: 28  PSLTASVADIPVPAAASTGIIRDT------LDSVDARE--LAATPRLYHSLITACARYRS 79

Query: 77  FDNQNVYNV-------PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            D+    +          +  + NSL+  Y KC  + +A ++FD MP RD  SW ++++G
Sbjct: 80  LDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           + +N   D   G     L  G ++ +  +F  +L A   S  S + + IH L     + +
Sbjct: 140 YAQNDMPDEALGLLPGMLR-GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHD 198

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V VG+AL+  Y +CG       VF ++  +N ++W A+I+G  +    E  L +F +M 
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                    TY S   A +G+ AL +G+ +H  + K   +    + + ++DMY+K GS+ 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA ++F+  ++ D V+   +L  FAQ G   EA+  F +M K G+ ++     ++L    
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS- 426
               +  GKQ   ++   ++   P +++   ++++  + G L D++    +M  + + + 
Sbjct: 379 HGGLVKEGKQYFDMM--KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAV 436

Query: 427 WNSMIAAFARHGNG----FKALELYE 448
           W +++ +   H N     F A  ++E
Sbjct: 437 WGALLGSCRMHKNAKIGQFAADHVFE 462


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 310/563 (55%), Gaps = 7/563 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--SL 147
           ++  +L++ Y +C  +  A K FD+M  +  V+WN +++G+ RNG+       ++   S 
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                + D  +F+  L AC         + I       GY  +  V NALI  Y KCGS 
Sbjct: 155 SPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            S RKVF  ++ R+VI W  +ISG  +     + L+LF +M      PN +T++  + AC
Sbjct: 215 ESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDGVSM 326
           + L+ L +GR IH  + +   +SDL I + L++MY+KC S +E+A Q+FE     D ++ 
Sbjct: 275 TNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITW 334

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            +++V + Q G  ++A+ +F +M    +  +   +S VL    V  +   GK +H+LI  
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               ++  + N L+NMY++CG L+D++ VF+ +  ++ VSW+++IAA+A+HG+    LE 
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + E+  EG+   DVT +S L ACSH G++ +G++   SM   H ++P   H+ C+VD++ 
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYI 565
           RAG L  A + I  MP  PD + W +LL  C +H D++     A+KLF L   D  +   
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVT 574

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+ +GRW +  K   R       K  G S+IEI   VH FV  DK HP+ + I  
Sbjct: 575 LLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAA 631

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            +  L + M D GYVP+ R +LH
Sbjct: 632 EIKRLSKQMKDAGYVPDMRMVLH 654



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 247/457 (54%), Gaps = 14/457 (3%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y KC  + +A+ +F  +   ++VSW  +V+ F RNG +    G+++R +  G  + D A
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGA 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGE 216
            F + +  C  S+     +++H ++      E ++ +G ALIT Y +C      RK F E
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYLSSVMACSGLQAL 273
           M  + ++TW A+I+G  +N  +   LK++  M       + P+++T+ S++ ACS +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +GR+I          SD  +++AL++MYSKCGS+E A ++F+  +  D ++   ++ G+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---LGLGKQIHSLIIKSDFT 390
           A+ G   +A++LF +M     +  PN+V+  +G+    T+   L  G+ IH  + +  + 
Sbjct: 240 AKQGAATQALELFQRM--GPNDPKPNVVT-FIGLLTACTNLEDLEQGRAIHRKVKEHGYE 296

Query: 391 SNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           S+  + N L+NMY+KC   LE++ +VF R+  R+ ++WN +I A+ ++G    AL+++++
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+LE V P ++T  ++L AC+ +G   +G + + ++    R          +++M  R G
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCG 415

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            L +       +  K  ++ W  L+ A + HG S  G
Sbjct: 416 SLDDTVGVFAAIRDKS-LVSWSTLIAAYAQHGHSRTG 451



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 226/449 (50%), Gaps = 20/449 (4%)

Query: 27  KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86
           KI QD  S + + +  + +  S  L   +  G    G  + A  + +    D        
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASD-------- 197

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
             +++ N+L++ Y KC  + +A K+FD +  RD ++WNTM+SG+ + G        F+R 
Sbjct: 198 --SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR- 254

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +     + +  +F  +L+AC   E     + IH  V   GYE ++ +GN L+  Y KC S
Sbjct: 255 MGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSS 314

Query: 207 S-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S    R+VF  +R R+VITW  +I   VQ    ++ L +F +M L  + PN +T  + + 
Sbjct: 315 SLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS 374

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ L A  +G+ +H ++     ++D+ +E++LM+MY++CGS++D   +F    +   VS
Sbjct: 375 ACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVS 434

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            + ++  +AQ+G     ++ F ++++ G+  D   + + L        L  G Q   L +
Sbjct: 435 WSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSF-LSM 493

Query: 386 KSDFTSNPFVNNGL--INMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGF 441
             D    P   + L  +++ S+ G LE +  +   M   P ++V+W S+++    H +  
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLP-DAVAWTSLLSGCKLHNDTK 552

Query: 442 KALELYEEM-KLEGV-EPTDVTFLSLLHA 468
           +A  + +++ +LE   E + VT LS ++A
Sbjct: 553 RAARVADKLFELESEDEHSTVTLLSNVYA 581



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 200/378 (52%), Gaps = 11/378 (2%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCGS +    VF  +   N ++WT +++   +N  Y E L  + +M L  + P+   +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 261 LSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + ++  CS  + L +G+ +H  IL    L+ D+ + +AL+ MY++C  +E A + F+   
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA---GIEIDPNMVSAVLGVFGVDTSLGL 376
           +   V+   ++ G+++NG    A++++  MV     G++ D    S+ L    V   +  
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G++I +  + S + S+  V N LINMYSKCG LE + KVF R+  R+ ++WN+MI+ +A+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G   +ALEL++ M     +P  VTF+ LL AC+++  + +G    + + E H       
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYESDLV 300

Query: 497 HYACVVDMVGR-AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
               +++M  + +  L EAR   ER+  + DV+ W  L+ A   +G +   K A +    
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVAYVQYGQA---KDALDIFKQ 356

Query: 556 AQPDSPAP-YILMANIYS 572
            Q ++ AP  I ++N+ S
Sbjct: 357 MQLENVAPNEITLSNVLS 374



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 164/306 (53%), Gaps = 19/306 (6%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCGSV DA  +F   E  + VS T+I+  FA+NG   EA+  + +MV  G+  D  M
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRM 419
               +GV      L  G+ +H++I+++     +  +   LI MY++C DLE + K F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEM---KLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  V+WN++IA ++R+G+   AL++Y++M     EG++P  +TF S L+ACS VG ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G E +++ T     +  +     +++M  + G L  AR   +R+  + DV+ W  ++  
Sbjct: 181 QGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 537 CSIHGDSEMGKYAAEKLFLAQ---PDSPAPYIL--MANIYSCSGRWK-ERAKAIKR-MKE 589
            +  G       A + L L Q   P+ P P ++  +  + +C+     E+ +AI R +KE
Sbjct: 239 YAKQG------AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE 292

Query: 590 MGVDKE 595
            G + +
Sbjct: 293 HGYESD 298


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/617 (32%), Positives = 338/617 (54%), Gaps = 15/617 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV---------- 90
           LD  VD   L S   +EGH  L P +  + +K     +   +    +A +          
Sbjct: 22  LDEVVD---LFSRVHREGH-ELNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAF 77

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y  C  + +A + FD +  +D VSW  MV+ +  N  F      F     +G
Sbjct: 78  VGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVG 137

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F   +  +F  +L AC   E   V K +H  V    YE ++ VG  L+  Y K G ++  
Sbjct: 138 F-NPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDV 196

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF EM   +VI W+ +IS   Q+    E ++LF +M    + PN  T+ S + +C+ +
Sbjct: 197 LRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASI 256

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L  G+Q+H  + K+ L  ++ + +ALMD+Y+KCG ++++ ++F      + V+   ++
Sbjct: 257 ENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMI 316

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VG+ Q+G  ++A+ L+  M++  ++      S+VL       ++ LG QIHSL +K+ + 
Sbjct: 317 VGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYD 376

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V N LI+MY+KCG ++++  VF  ++ R+ +SWN+MI+ ++ HG   +AL+ ++ M
Sbjct: 377 KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMM 436

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +     P  +TF+S+L ACS+ GL++ G  + KSM + + I P  EHY C+V ++GR+G 
Sbjct: 437 QETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGH 496

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   IE +P++P+V VW+ALLGAC IH D ++G  +A+++    P   A ++L++NI
Sbjct: 497 LDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNI 556

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ + RW   A   K MK  GV KE G+SWIE +  VH F V D  HP    I G+L  L
Sbjct: 557 YARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWL 616

Query: 631 LRLMIDEGYVPNKRFIL 647
                  GYVP+   +L
Sbjct: 617 NMKTEKAGYVPDLNAVL 633



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 241/433 (55%), Gaps = 15/433 (3%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MP R+TVS+ T++ G++++ + D     F R    G ++L+   FT IL      E + +
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREG-HELNPFVFTTILKLLVSVECAEL 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +  +H  +Y  G+E    VG ALI +Y  CGS +S R+ F  +  +++++WT +++   +
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N  +++ L+LF +M +   NPN  T+   + AC GL+A   G+ +HG + K   + DL +
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
              L+D+Y+K G   D  ++FE   + D +  + ++  +AQ+    EA++LF +M +A +
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             +    ++VL       +L LGKQ+H  ++K     N FV+N L+++Y+KCG L++S+K
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  +  RN V+WN+MI  + + G+G KAL LY+ M    V+ ++VT+ S+L AC+ +  
Sbjct: 300 LFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVL 528
           +  G       T++H +S +  +   VV      DM  + G +  AR  +  M  + D +
Sbjct: 360 MELG-------TQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR-LVFDMLSERDEI 411

Query: 529 VWQALLGACSIHG 541
            W A++   S+HG
Sbjct: 412 SWNAMISGYSMHG 424



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 17/236 (7%)

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           + VS   ++ G+ Q+   +E + LF ++ + G E++P + + +L +        L   +H
Sbjct: 5   NTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLH 64

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + I K    SN FV   LI+ Y+ CG +  + + F  +A ++ VSW  M+A +A +    
Sbjct: 65  ACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQ 124

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEH 497
            +L+L+ EM++ G  P   TF  +L AC        G+E       VH    +     + 
Sbjct: 125 DSLQLFAEMRMVGFNPNHFTFAGVLKACI-------GLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 498 YACV--VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           Y  V  +D+  + G   +     E MP K DV+ W  ++   S +  S   + A E
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMI---SRYAQSNQSREAVE 229


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 313/560 (55%), Gaps = 9/560 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y K      A+ +F ++P  D VSWN +++G + + + D+      +   +G Y
Sbjct: 227 NALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGK---MGSY 283

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           ++  + FT+   L AC    L  + + +H  +     E +  VG  LI  Y KCG     
Sbjct: 284 RVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDA 343

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  ++VI W ++ISG        E + LF  M+   +  N  T  + + + +G 
Sbjct: 344 RMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGS 403

Query: 271 QA--LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           QA   CE  Q+H I  K   Q D  + ++L+D Y KC  +EDA ++FE     D V+ T 
Sbjct: 404 QANGFCE--QVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTS 461

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  ++Q G  EEA++++++M    I+ D  + S++       ++   GKQIH  ++K  
Sbjct: 462 MITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG 521

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S+ F  N L+NMY+KCG ++D+  +F+ ++ R  VSW++MI   A+HG+G KAL+L+ 
Sbjct: 522 LLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFY 581

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G+ P  +T +S+L AC+H GLV +   F   M ++  I+P  EHYAC+VD++GR 
Sbjct: 582 QMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRV 641

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   ++ MP +    VW ALLGA  IH + E+G++AAE L   +P+    +IL+A
Sbjct: 642 GRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLA 701

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G W   AK  + MK   V KE G+SWIE++ +V++F+V D+ HP++  I+  L 
Sbjct: 702 NIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLD 761

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   +   GYVP     LH
Sbjct: 762 DLRERLTSAGYVPMIETDLH 781



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/487 (28%), Positives = 244/487 (50%), Gaps = 45/487 (9%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE--------FDM--------G 139
           ++ Y KC   R A KL  D    D VSW+ ++SG+++NG         ++M         
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 140 FGF--------FKRSLELG--FYQL-------------DQASFTIILSACDRSELSLVSK 176
           F F          R+LELG   +++             ++ S + +L+AC   E      
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H  +   GY+ +    NAL+  Y K G   +   VF E+   ++++W AVI+G V ++
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             +  LKL  KM    + P+  T  S++ AC+ +  +  GRQ+H  L K+ ++ D  +  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
            L+DMYSKCG ++DA  +F+     D +    I+ G++  G++ EAM LF  M K G+E 
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +   +S +L       + G  +Q+H++ IKS +  + +V N L++ Y KC  LED+ KVF
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
                 + V++ SMI A++++G G +AL++Y  M+   ++P    F SL +AC+++    
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYE 508

Query: 477 KGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +G +       V +    ++ +A   +V+M  + G + +A      +  +  ++ W A++
Sbjct: 509 QGKQI---HVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMI 564

Query: 535 GACSIHG 541
           G  + HG
Sbjct: 565 GGLAQHG 571



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 185/422 (43%), Gaps = 77/422 (18%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL---------- 250
           Y KC      RK+  +    ++++W+A+ISG VQN   EE L  + +M+L          
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 251 ------------------------------GLINPNSLTYLSSVMACSGLQALCEGRQIH 280
                                           I+PN  +  + + AC+GL+    G ++H
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
           G L KL   SD    +AL+DMY+K G  E A  +F    + D VS   ++ G   +   +
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 341 EAMQLFVKMVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            A++L  KM      + P+M  +S+ L        + LG+Q+HS ++K D   + FV  G
Sbjct: 272 LALKLLGKM--GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVG 329

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MYSKCG L+D+  VF  M  ++ + WNS+I+ ++  G   +A+ L+  M  EG+E  
Sbjct: 330 LIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFN 389

Query: 459 DVTFLSLLHACS-----------HVGLVNKGMEF-----------------LKSMTEVHR 490
             T  ++L + +           H   +  G ++                 L+   +V  
Sbjct: 390 QTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFE 449

Query: 491 ISPRAE--HYACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEM 545
           + P  +   Y  ++    + GL  EA     RM    +KPD  ++ +L  AC+     E 
Sbjct: 450 VCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQ 509

Query: 546 GK 547
           GK
Sbjct: 510 GK 511



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 89/278 (32%)

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +N+YSKC     + K+    +  + VSW+++I+ + ++G G +AL  Y EM L G +  +
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-----------ISPRA------------- 495
            TF S+L  CS    + + +E  K   ++HR           ISP               
Sbjct: 149 FTFSSVLKGCS----LTRNLELGK---QIHRVALVTEMISTGISPNEFSLSTVLNACAGL 201

Query: 496 --EHYA--------------------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
             E+Y                      ++DM  ++G    A +    +P KPD++ W A+
Sbjct: 202 EDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAV 260

Query: 534 LGACSIHGDSE-----MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           +  C +H  ++     +GK  + ++      +P+ + L + + +C+              
Sbjct: 261 IAGCVLHEKNDLALKLLGKMGSYRV------APSMFTLSSALKACA-------------- 300

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
                    I  +++ +Q+HS ++   M P  D+  GV
Sbjct: 301 --------AIGLVKLGRQLHSALMKMDMEP--DSFVGV 328


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 310/563 (55%), Gaps = 7/563 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--SL 147
           ++  +L++ Y +C  +  A K FD+M  +  V+WN +++G+ RNG+       ++   S 
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                + D  +F+  L AC         + I       GY  +  V NALI  Y KCGS 
Sbjct: 155 SPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            S RKVF  ++ R+VI W  +ISG  +     + L+LF +M      PN +T++  + AC
Sbjct: 215 ESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDGVSM 326
           + L+ L +GR IH  + +   +SDL I + L++MY+KC S +E+A Q+FE     D ++ 
Sbjct: 275 TNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITW 334

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            +++V + Q G  ++A+ +F +M    +  +   +S VL    V  +   GK +H+LI  
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIAS 394

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               ++  + N L+NMY++CG L+D++ VF+ +  ++ VSW+++IAA+A+HG+    LE 
Sbjct: 395 GRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEH 454

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + E+  EG+   DVT +S L ACSH G++ +G++   SM   H ++P   H+ C+VD++ 
Sbjct: 455 FWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLS 514

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYI 565
           RAG L  A + I  MP  PD + W +LL  C +H D++     A+KLF L   D  +   
Sbjct: 515 RAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVT 574

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+ +GRW +  K   R       K  G S+IEI   VH FV  DK HP+ + I  
Sbjct: 575 LLSNVYAEAGRWDDVRKTRNR---RAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAA 631

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            +  L + M D GYVP+ R +LH
Sbjct: 632 EIKRLSKQMKDAGYVPDMRMVLH 654



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 247/457 (54%), Gaps = 14/457 (3%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y KC  + +A+ +F  +   ++VSW  +V+ F RNG +    G+++R +  G  + D A
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL-RPDGA 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGE 216
            F + +  C  S+     +++H ++      E ++ +G ALIT Y +C      RK F E
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYLSSVMACSGLQAL 273
           M  + ++TW A+I+G  +N  +   LK++  M       + P+++T+ S++ AC+ +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +GR+I          SD  +++AL++MYSKCGS+E A ++F+  +  D ++   ++ G+
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---LGLGKQIHSLIIKSDFT 390
           A+ G   +A++LF +M     +  PN+V+  +G+    T+   L  G+ IH  + +  + 
Sbjct: 240 AKQGAATQALELFQRM--GPNDPKPNVVT-FIGLLTACTNLEDLEQGRAIHRKVREDGYE 296

Query: 391 SNPFVNNGLINMYSKC-GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           S+  + N L+NMY+KC   LE++ +VF RM  R+ ++WN +I A+ ++G    AL+++++
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+LE V P ++T  ++L AC+ +G   +G + + ++    R          +++M  R G
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCG 415

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            L +       +  K  ++ W  L+ A + HG S  G
Sbjct: 416 SLDDTVGVFAAIRDKS-LVSWSTLIAAYAQHGHSRTG 451



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 225/449 (50%), Gaps = 20/449 (4%)

Query: 27  KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86
           KI QD  S + + +  + +  S  L      G    G  + A  + +    D        
Sbjct: 146 KIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASD-------- 197

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
             +++ N+L++ Y KC  + +A K+FD +  RD ++WNTM+SG+ + G        F+R 
Sbjct: 198 --SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR- 254

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +     + +  +F  +L+AC   E     + IH  V   GYE ++ +GN L+  Y KC S
Sbjct: 255 MGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSS 314

Query: 207 S-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S    R+VF  MR R+VITW  +I   VQ    ++ L +F +M L  + PN +T  + + 
Sbjct: 315 SLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS 374

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ L A  +G+ +H ++     ++D+ +E++LM+MY++CGS++D   +F    +   VS
Sbjct: 375 ACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVS 434

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            + ++  +AQ+G     ++ F ++++ G+  D   + + L        L  G Q   L +
Sbjct: 435 WSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTF-LSM 493

Query: 386 KSDFTSNPFVNNGL--INMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGF 441
             D    P   + L  +++ S+ G LE +  +   M   P ++V+W S+++    H +  
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLP-DAVAWTSLLSGCKLHNDTK 552

Query: 442 KALELYEEM-KLEGV-EPTDVTFLSLLHA 468
           +A  + +++ +LE   E + VT LS ++A
Sbjct: 553 RAARVADKLFELESEDEHSTVTLLSNVYA 581



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 25/385 (6%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCGS +    VF  +   N ++WT +++   +N  Y E L  + +M L  + P+   +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 261 LSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + ++  CS  + L +G+ +H  IL    L+ D+ + +AL+ MY++C  +E A + F+   
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA---GIEIDPNMVSAVLGVFGVDTSLGL 376
           +   V+   ++ G+++NG    A++++  MV     G++ D    S+ L    V   +  
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G++I +  + S + S+  V N LINMYSKCG LE + KVF R+  R+ ++WN+MI+ +A+
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G   +ALEL++ M     +P  VTF+ LL AC++       +E L+    +HR   R +
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTN-------LEDLEQGRAIHR-KVRED 293

Query: 497 HYA-------CVVDMVGR-AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
            Y         +++M  + +  L EAR   ERM  + DV+ W  L+ A   +G +   K 
Sbjct: 294 GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVAYVQYGQA---KD 349

Query: 549 AAEKLFLAQPDSPAP-YILMANIYS 572
           A +     Q ++ AP  I ++N+ S
Sbjct: 350 ALDIFKQMQLENVAPNEITLSNVLS 374



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 164/306 (53%), Gaps = 19/306 (6%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCGSV DA  +F   E  + VS T+I+  FA+NG   EA+  + +MV  G+  D  M
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRM 419
               +GV      L  G+ +H++I+++     +  +   LI MY++C DLE + K F  M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEM---KLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  V+WN++IA ++R+G+   AL++Y++M     EG++P  +TF S L+AC+ VG ++
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G E +++ T     +  +     +++M  + G L  AR   +R+  + DV+ W  ++  
Sbjct: 181 QGRE-IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNR-DVIAWNTMISG 238

Query: 537 CSIHGDSEMGKYAAEKLFLAQ---PDSPAPYIL--MANIYSCSGRWK-ERAKAIKR-MKE 589
            +  G       A + L L Q   P+ P P ++  +  + +C+     E+ +AI R ++E
Sbjct: 239 YAKQG------AATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRE 292

Query: 590 MGVDKE 595
            G + +
Sbjct: 293 DGYESD 298


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 197/561 (35%), Positives = 312/561 (55%), Gaps = 4/561 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V + +V+ N LL+ YLK  +  +A ++FD+M +RD+V++NTM+ G+L+    +     F 
Sbjct: 238 VNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFL 297

Query: 145 RSLELGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            +L+   ++ D  + T +L AC    +LSL +K I+  +   G+  E TV N LI  Y K
Sbjct: 298 ENLDQ--FKPDILTVTSVLCACGHLRDLSL-AKYIYNYMLRAGFVLESTVKNILIDVYAK 354

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG   + R VF  M  ++ ++W ++ISG +Q+    E +KLF  M +     + +TYL  
Sbjct: 355 CGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLML 414

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           +   + L  L  G+ +H    K  +  DL + +AL+DMY+KCG V D+ +IF     LD 
Sbjct: 415 ISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDT 474

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+   ++    + G     +Q+  +M K  +  D       L +     +  LGK+IH  
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCC 534

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +++  + S   + N LI MYSKCG LE S +VF RM+ R+ V+W  MI A+  +G G KA
Sbjct: 535 LLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKA 594

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           LE + +M+  G+ P  V F++L++ACSH GLV KG+   + M   ++I P  EHYACVVD
Sbjct: 595 LESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVD 654

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++ R+  + +A  FI+ MP++PD  +W ++L AC   GD E  +  + ++    PD P  
Sbjct: 655 LLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGY 714

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
            IL +N Y+   +W + +   K +++  + K  G SWIEI K+VH F   D   PQ++ I
Sbjct: 715 SILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAI 774

Query: 624 HGVLAELLRLMIDEGYVPNKR 644
           H  L  L  LM  EGY+P+ R
Sbjct: 775 HKSLEILYSLMAKEGYIPDSR 795



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 252/494 (51%), Gaps = 25/494 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y +   +  A ++FD+MP+RD VSWN+++SG+  +       G+++ +LE+ 
Sbjct: 143 VGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSH-------GYYEEALEI- 194

Query: 151 FYQLDQA-----SFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           +++L  +     SFT+  +L A     +    + +H      G      V N L+  Y K
Sbjct: 195 YHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLK 254

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
               +  R+VF EM VR+ +T+  +I G ++ ++ EE +K+F++ +L    P+ LT  S 
Sbjct: 255 FSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSV 313

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC  L+ L   + I+  + +     +  +++ L+D+Y+KCG +  A  +F   E  D 
Sbjct: 314 LCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   I+ G+ Q+G   EAM+LF  M+    + D      ++ +      L  GK +HS 
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSN 433

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            IKS    +  V+N LI+MY+KCG++ DS+K+F+ M   ++V+WN++I+A  R G+    
Sbjct: 434 GIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATG 493

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L++  +M+   V P   TFL  L  C+ +     G E    +      S      A +++
Sbjct: 494 LQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA-LIE 552

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--- 560
           M  + G L  +    ERM  + DV+ W  ++ A  ++G+ E     A + F+    S   
Sbjct: 553 MYSKCGCLESSFRVFERMS-RRDVVTWTGMIYAYGMYGEGE----KALESFVDMEKSGIV 607

Query: 561 PAPYILMANIYSCS 574
           P   + +A IY+CS
Sbjct: 608 PDSVVFIALIYACS 621



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 223/433 (51%), Gaps = 8/433 (1%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P ++   WN+++  F +NG F     F+ + L       D+ +F  ++ AC     + + 
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGK-LRESKVSPDKYTFPSVIKACAGLFDAEMG 125

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
            +++  +   G+E ++ VGNAL+  Y + G  S  R+VF EM VR++++W ++ISG   +
Sbjct: 126 DLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             YEE L+++ ++    I P+S T  S + A + L  + +G+ +HG   K  + S   + 
Sbjct: 186 GYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVN 245

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           + L+ MY K     DA ++F+     D V+   ++ G+ +    EE++++F++ +    +
Sbjct: 246 NGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLD---Q 302

Query: 356 IDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
             P++  V++VL   G    L L K I++ ++++ F     V N LI++Y+KCGD+  + 
Sbjct: 303 FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITAR 362

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            VF+ M  +++VSWNS+I+ + + G+  +A++L++ M +   +   +T+L L+   + + 
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLA 422

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +  G + L S      I         ++DM  + G + ++      M    D + W  +
Sbjct: 423 DLKFG-KGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGT-LDTVTWNTV 480

Query: 534 LGACSIHGDSEMG 546
           + AC   GD   G
Sbjct: 481 ISACVRFGDFATG 493



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 16/374 (4%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQ 234
           + IH LV   G +        LI  Y    + +S   VF  +   +NV  W ++I    +
Sbjct: 24  RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSK 83

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N  + + L+ + K+    ++P+  T+ S + AC+GL     G  ++  + ++  +SDL +
Sbjct: 84  NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYV 143

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +AL+DMYS+ G +  A Q+F+     D VS   ++ G++ +G+ EEA++++ ++  + I
Sbjct: 144 GNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWI 203

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D   VS+VL  F     +  G+ +H   +KS   S   VNNGL+ MY K     D+ +
Sbjct: 204 VPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARR 263

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE---MKLEGVE---PTDVTFLSLLHA 468
           VF  M  R+SV++N+MI        G+  LE+ EE   M LE ++   P  +T  S+L A
Sbjct: 264 VFDEMVVRDSVTYNTMIC-------GYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCA 316

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           C H+  ++        M     +         ++D+  + G +I AR     M  K D +
Sbjct: 317 CGHLRDLSLAKYIYNYMLRAGFVLESTVK-NILIDVYAKCGDMITARDVFNSMECK-DTV 374

Query: 529 VWQALLGACSIHGD 542
            W +++      GD
Sbjct: 375 SWNSIISGYIQSGD 388



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A S    L E R+IH ++  L L         L+D YS   +   +  +F        V 
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVY 72

Query: 326 M-TVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQI 380
           +   I+  F++NG+  +A++ + K+ ++ +  D    P+++ A  G+F  +    +G  +
Sbjct: 73  IWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAE----MGDLV 128

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           +  I++  F S+ +V N L++MYS+ G L  + +VF  M  R+ VSWNS+I+ ++ HG  
Sbjct: 129 YKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            +ALE+Y E++   + P   T  S+L A +++ +V +G
Sbjct: 189 EEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQG 226


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 215/651 (33%), Positives = 339/651 (52%), Gaps = 49/651 (7%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           ++ S L  + Y  ++ L + S+   HFH G  LHA+ +KT   FD         +  + N
Sbjct: 155 TTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAH-FD---------SPFVAN 204

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+S Y K      A+KLF+ +P RD  SWNT++S  L++  +D  F  F+       ++
Sbjct: 205 ALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFR 264

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  + +I+L+A   S   +  + +H      G E ++ VGN LI  Y K G+      +
Sbjct: 265 VDDFTLSILLTA---SASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWL 321

Query: 214 FGEMRVRNVITWT-------------------------------AVISGLVQNQLYEEGL 242
           F  MRVR+VITWT                                V++G  +N+   E +
Sbjct: 322 FEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAM 381

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LFV+M    +     +  S V AC  L      +Q+HG   K    S+  +E+AL+DMY
Sbjct: 382 RLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALLDMY 441

Query: 303 SKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPN 359
           ++CG + DA ++F     EE   V  T ++ G+A+NG  EEA+ LF V      + +D  
Sbjct: 442 TRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEV 501

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             +++LG+ G    L +GKQIH  +IK     N  V N +++MY KCG ++D++KVF  M
Sbjct: 502 AAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDM 561

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC--SHVGLVNK 477
              + V+WN++I+    H  G +ALE++ EM  EG++P  VTF+ ++ A   +++ LV+ 
Sbjct: 562 PCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDD 621

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
                 SM  V++I P + HYA  + ++G  GLL EA   I  MP +P  LVW+ LL  C
Sbjct: 622 CRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGC 681

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            +H +  +GK+AA+ +   +P  P+ +IL++N+YS SGRW       + M+E G  K   
Sbjct: 682 RLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPA 741

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            SWI  EK+++SF   D+ HPQ   I   L  L+   +  GY P+  F+LH
Sbjct: 742 QSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLH 792



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 143/539 (26%), Positives = 255/539 (47%), Gaps = 67/539 (12%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           L +S++ G  HL  ++HA+ +K  E             T + N+L+S YLK +   +A++
Sbjct: 71  LHVSSRSGDTHLAKTVHATLLKRDE-----------EDTHLSNALISTYLKLNLFPHALR 119

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LF  +P  + VS+ T++S FL           F R         ++ ++  +L+AC    
Sbjct: 120 LFLSLPSPNVVSYTTLIS-FLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACS--- 175

Query: 171 LSLVSKM-----IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
            SL+        +H       + +   V NAL++ Y K  S  +  K+F ++  R++ +W
Sbjct: 176 -SLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQIPRRDIASW 234

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLG---LINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
             +IS  +Q+ LY+   +LF  M       ++  +L+ L +  A     +L EG+Q+H  
Sbjct: 235 NTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASA-----SLMEGQQVHAH 289

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVED-------------------------------A 311
             KL L++DL + + L+  YSK G+V+D                               A
Sbjct: 290 AVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLA 349

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+   E + VS   +L GF +N    EAM+LFV+MV+ G+E+    +++V+   G+ 
Sbjct: 350 LKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLL 409

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNS 429
               + KQ+H   +K  F SN +V   L++MY++CG + D+ K+F R  +   +SV W +
Sbjct: 410 GDYKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTA 469

Query: 430 MIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           MI  +AR+G   +A+ L+   + +G V   +V   S+L  C  +G ++ G +    + + 
Sbjct: 470 MICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKC 529

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEM 545
             +    E    VV M  + G + +A      MP   D++ W  L+    +H  GD  +
Sbjct: 530 -GLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCT-DIVTWNTLISGNLMHRQGDRAL 586



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 207/449 (46%), Gaps = 55/449 (12%)

Query: 143 FKRSLELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
            +  L  G + L   S +++  L    RS  + ++K +H  + L   EE+  + NALI++
Sbjct: 49  LRHKLRHGTHYLPPESHSLLHALHVSSRSGDTHLAKTVHATL-LKRDEEDTHLSNALIST 107

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLT 259
           Y K        ++F  +   NV+++T +IS L +++ +   L LF++M     + PN  T
Sbjct: 108 YLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQHH-ALHLFLRMTTRSHLPPNEYT 166

Query: 260 YLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           Y++ + ACS L      G Q+H    K A      + +AL+ +Y+K  S   A ++F   
Sbjct: 167 YVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHASFHAALKLFNQI 226

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
              D  S   I+    Q+   + A +LF  M       +D   +S +L       SL  G
Sbjct: 227 PRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTA---SASLMEG 283

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED-------------------------- 411
           +Q+H+  +K    ++  V NGLI  YSK G+++D                          
Sbjct: 284 QQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEF 343

Query: 412 -----SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
                ++KVF  M  +NSVS+N+++A F R+  GF+A+ L+  M  EG+E TD +  S++
Sbjct: 344 GLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVV 403

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPR----AEHY--ACVVDMVGRAGLLIEARSFIER 520
            AC   GL+       K   +VH  + +    +  Y  A ++DM  R G +++A     R
Sbjct: 404 DAC---GLLGD----YKVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLR 456

Query: 521 MPVKP-DVLVWQALLGACSIHGDSEMGKY 548
             ++    +VW A++   + +G  E   Y
Sbjct: 457 WELEEFSSVVWTAMICGYARNGQPEEAIY 485


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 210/613 (34%), Positives = 330/613 (53%), Gaps = 21/613 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N    S +LS+ A +G   LG  +HA  IK          +   +   + NSL++ Y
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIK----------FGCCSTVFVCNSLMNMY 202

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +F  M  RD VSWNT+++G + NG        F  S       L ++++
Sbjct: 203 AKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRS-SITMLTESTY 261

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR- 218
           + +++ C   +   +++ +H  V   G+     V  AL+ +Y K G       VF  M  
Sbjct: 262 STVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSG 321

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +NV++WTA+I G +QN        LF +M    + PN LTY S+++  S         Q
Sbjct: 322 SQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTY-STILTVSEASF---PPQ 377

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  + K   +    + +ALM  YSK  S E+A  IF+  ++ D VS + +L  +AQ G 
Sbjct: 378 IHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGD 437

Query: 339 EEEAMQLFVKMVKAGIEIDPN---MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
              A   F+KM   G++  PN   + SA+         + LG+Q H++ IK        V
Sbjct: 438 CNGATNAFIKMTMHGLK--PNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCV 495

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           ++ L++MY++ G +E++  VF R   R+ +SWNSM++ +A+HG   KAL+++ +M++EG+
Sbjct: 496 SSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGI 555

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +   +TFLS++  C+H GLV +G ++   M   + I+P  +HYAC+VD+  RAG L E  
Sbjct: 556 DMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETM 615

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           S IE MP      +W+ALLGAC +H + E+GK AAEKL   +P   A Y+L++NIYS +G
Sbjct: 616 SLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAG 675

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
           +WKE+ +  K M    V KE G SWI+I+ +VH F+  DK HP ++ I+  L  +   + 
Sbjct: 676 KWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLK 735

Query: 636 DEGYVPNKRFILH 648
            EGY P+  F+ H
Sbjct: 736 QEGYCPDTSFVPH 748



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/485 (26%), Positives = 232/485 (47%), Gaps = 18/485 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  LHA  ++     D+ ++        +  SL+  Y+    + +  K+F+ M  R+ V
Sbjct: 73  LGKQLHALCVRCGH--DHGDIR-------VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVV 123

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +W ++++G+++ G        F R    G +  +  +F+ +LS      +  + + +H  
Sbjct: 124 TWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWP-NPFTFSSVLSMVASQGMVDLGQHVHAQ 182

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G    V V N+L+  Y KCG     R VF  M  R++++W  +++GLV N    E 
Sbjct: 183 SIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEA 242

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF      +      TY + +  C+ L+ L   RQ+H  + K    S   + +ALMD 
Sbjct: 243 LQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDA 302

Query: 302 YSKCGSVEDAWQIFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           Y+K G ++ A  +F   +   + VS T ++ G  QNG    A  LF +M + G+  +   
Sbjct: 303 YNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLT 362

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            S +L V    +      QIH+ +IK+++   P V   L+  YSK    E+++ +F  + 
Sbjct: 363 YSTILTV----SEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMID 418

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGM 479
            ++ VSW++M+  +A+ G+   A   + +M + G++P + T  S + AC S    V+ G 
Sbjct: 419 QKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGR 478

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           +F  +++  HR        + +V M  R G +  A+   ER   + D+L W ++L   + 
Sbjct: 479 QF-HAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDR-DLLSWNSMLSGYAQ 536

Query: 540 HGDSE 544
           HG S+
Sbjct: 537 HGYSQ 541



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 167/308 (54%), Gaps = 4/308 (1%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           I+  C      ++ K +H L   CG++  ++ VG +L+  Y    S   GRKVF  M  R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQI 279
           NV+TWT++++G +Q  +  + + LF +M    + PN  T+ SSV++    Q + + G+ +
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTF-SSVLSMVASQGMVDLGQHV 179

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H    K    S + + ++LM+MY+KCG VE+A  +F   E  D VS   ++ G   NG +
Sbjct: 180 HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRD 239

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA+QLF     +   +  +  S V+ +      LGL +Q+HS ++K  F S   V   L
Sbjct: 240 LEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTAL 299

Query: 400 INMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           ++ Y+K G L+ ++ VF  M+  +N VSW +MI    ++G+   A  L+  M+ +GV P 
Sbjct: 300 MDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPN 359

Query: 459 DVTFLSLL 466
           D+T+ ++L
Sbjct: 360 DLTYSTIL 367


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 222/640 (34%), Positives = 334/640 (52%), Gaps = 62/640 (9%)

Query: 60  FHLGPSLHAS-FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F  G S+HA  F   FE       +NV     + N L+S Y +C    NA ++FD+M  R
Sbjct: 161 FRCGASVHAVVFASGFE-------WNV----FVGNGLVSMYGRCGAWENARQVFDEMRER 209

Query: 119 ---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
              D VSWN++V+ +++ G+       F+R  E    + D  S   +L AC         
Sbjct: 210 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 269

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR--------------- 220
           K +H      G  E+V VGNA++  Y KCG      KVF  M+V+               
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 221 --------------------NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
                               NV+TW+AVI+G  Q  L  E L +F +M L    PN +T 
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 261 LSSVMACSGLQALCEGRQIH--GILWKLALQ-----SDLCIESALMDMYSKCGSVEDAWQ 313
           +S +  C+    L  G++ H   I W L L       DL + +AL+DMYSKC S + A  
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 449

Query: 314 IFEFAEELDG--VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFG 369
           +F+     D   V+ TV++ G AQ+G   EA++LF +M++    + PN   +S  L    
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 509

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
              +L  G+QIH+ ++++ F S   FV N LI+MYSK GD++ +  VF  M  RN VSW 
Sbjct: 510 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 569

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           S++  +  HG G +AL+++ EM+   + P  VTF+ +L+ACSH G+V++G+ +   M + 
Sbjct: 570 SLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 629

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
             + P AEHYAC+VD++ RAG L EA   I  MP+KP   VW ALL AC ++ + E+G+Y
Sbjct: 630 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 689

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AA +L   +  +   Y L++NIY+ +  WK+ A+    MK  G+ K  G SW++  K   
Sbjct: 690 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 749

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +F   D  HP +  I+ +L +L++ +   GYVP+ RF LH
Sbjct: 750 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALH 789



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/537 (26%), Positives = 252/537 (46%), Gaps = 65/537 (12%)

Query: 95  LLSFYLKCDQMRNAVKLFDDM-PMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++S YL  +    A+ +   + P   TV W N ++   +  G  +     ++R   LG +
Sbjct: 83  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-W 141

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L AC           +H +V+  G+E  V VGN L++ Y +CG+  + R+
Sbjct: 142 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 201

Query: 213 VFGEMRVRNV---ITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACS 268
           VF EMR R V   ++W ++++  +Q       +K+F +M   L I P++++ ++ + AC+
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACA 261

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--------- 319
            + A   G+Q+HG   +  L  D+ + +A++DMY+KCG +E+A ++FE  +         
Sbjct: 262 SVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNA 321

Query: 320 --------------------------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
                                     EL+ V+ + ++ G+AQ G   EA+ +F +M+  G
Sbjct: 322 MVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG 381

Query: 354 IEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIK-------SDFTSNPFVNNGLINMYS 404
            E  PN+V+ V  + G  ++  L  GK+ H   IK       +D   +  V N LI+MYS
Sbjct: 382 SE--PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYS 439

Query: 405 KCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPTDV 460
           KC   + +  +F  + P  R+ V+W  +I   A+HG   +ALEL+ +M      V P   
Sbjct: 440 KCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAF 499

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T    L AC+ +G +  G +    +      S       C++DM  ++G +  AR   + 
Sbjct: 500 TISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDN 559

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCS 574
           M  +  V  W +L+    +HG  E      Y  +K+ L     P     +  +Y+CS
Sbjct: 560 MHQRNGV-SWTSLMTGYGMHGRGEEALQIFYEMQKVXLV----PDGVTFVVVLYACS 611


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 317/560 (56%), Gaps = 7/560 (1%)

Query: 93  NSLLSFYLKCD---QMRNAVK-LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           N LL+  L+C       N  + LF  +   +   WNTM+ G + N  FD    F+     
Sbjct: 46  NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105

Query: 149 LGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            GF   +  +F  +L AC R  +L L  K IH LV   G++ +V V  +L+  Y KCG  
Sbjct: 106 EGFLP-NNFTFPFVLKACARLLDLQLGVK-IHTLVVKGGFDCDVFVKTSLVCLYAKCGYL 163

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               KVF ++  +NV++WTA+ISG +    + E + +F ++    + P+S T +  + AC
Sbjct: 164 EDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSAC 223

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  G  IH  + ++ +  ++ + ++L+DMY+KCG++E A  +F+   E D VS  
Sbjct: 224 TQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWG 283

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G+A NG  +EA+ LF++M +  ++ D   V  VL       +L LG+ +  L+ ++
Sbjct: 284 AMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRN 343

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           +F  NP +   LI++Y+KCG +  + +VF  M  ++ V WN++I+  A +G    +  L+
Sbjct: 344 EFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLF 403

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +++  G++P   TF+ LL  C+H GLV++G  +  SM     ++P  EHY C+VD++GR
Sbjct: 404 GQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGR 463

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL EA   I  MP++ + +VW ALLGAC IH D+++ + A ++L   +P +   Y+L+
Sbjct: 464 AGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLL 523

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIYS + +W E AK    M E  + K  G SWIE++  VH F+V DK HP ++ I+  L
Sbjct: 524 SNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKL 583

Query: 628 AELLRLMIDEGYVPNKRFIL 647
            EL + M   GYVP   F+L
Sbjct: 584 DELTKKMKVAGYVPTTDFVL 603



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 16/271 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I R+LS   + G  + G  +H   ++         V NV     +  SL+  Y KC  M 
Sbjct: 216 IVRVLSACTQLGDLNSGEWIHKCIMEM------GMVRNV----FVGTSLVDMYAKCGNME 265

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILS 164
            A  +FD MP +D VSW  M+ G+  NG        F   L++    +    +T+  +LS
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLF---LQMQRENVKPDCYTVVGVLS 322

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC R     + + +  LV    +     +G ALI  Y KCGS S   +VF  M+ ++ + 
Sbjct: 323 ACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVV 382

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W A+ISGL  N   +    LF ++    I P+  T++  +  C+    + EGR+    ++
Sbjct: 383 WNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMY 442

Query: 285 K-LALQSDLCIESALMDMYSKCGSVEDAWQI 314
           +  +L   +     ++D+  + G +++A Q+
Sbjct: 443 RFFSLTPSIEHYGCMVDLLGRAGLLDEAHQL 473


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 328/587 (55%), Gaps = 22/587 (3%)

Query: 68  ASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           A+F  T EP    NV++       +N ++  Y K  ++  A +LFD++P  DTVS+NT++
Sbjct: 64  AAFYSTEEP----NVFS-------YNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLI 112

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSACDRSELSLVSKMIHCLVYLCG 186
           SG+    E       FKR  +LGF ++D  + + +I + CDR +L    K +HC     G
Sbjct: 113 SGYADARETFAAMVLFKRMRKLGF-EVDGFTLSGLIAACCDRVDLI---KQLHCFSVSGG 168

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           ++   +V NA +T Y K G       VF G   +R+ ++W ++I    Q++   + L L+
Sbjct: 169 FDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALY 228

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M       +  T  S + A + L  L  GRQ HG L K     +  + S L+D YSKC
Sbjct: 229 KEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKC 288

Query: 306 GSVE---DAWQIFEFAEELDGVSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDPNMV 361
           G  +   D+ ++F+     D V    ++ G++ N    EEA++ F +M + G   D    
Sbjct: 289 GGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSF 348

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMA 420
             V       +S    KQIH L IKS   SN   VNN LI++Y K G+L+D+  VF RM 
Sbjct: 349 VCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             N+VS+N MI  +A+HG+G +AL LY+ M   G+ P  +TF+++L AC+H G V++G E
Sbjct: 409 ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE 468

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  +M E  +I P AEHY+C++D++GRAG L EA  FI+ MP KP  + W ALLGAC  H
Sbjct: 469 YFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKH 528

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            +  + + AA +L + QP +  PY+++AN+Y+ + +W+E A   K M+   + K+ G SW
Sbjct: 529 KNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSW 588

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           IE++K+ H FV +D  HP    ++  L E+++ M   GYV +K++ +
Sbjct: 589 IEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 197/462 (42%), Gaps = 56/462 (12%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
              K +H L           + N  +  Y KCG  S  R  F      NV ++  ++   
Sbjct: 25  FTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAY 84

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV---------------------------- 264
            ++       +LF +    +  P++++Y + +                            
Sbjct: 85  AKDSKIHIARQLFDE----IPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDG 140

Query: 265 MACSGLQALCEGR-----QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
              SGL A C  R     Q+H         S   + +A +  YSK G + +A  +F   +
Sbjct: 141 FTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 320 EL-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           EL D VS   ++V + Q+    +A+ L+ +M+  G +ID   +++VL        L  G+
Sbjct: 201 ELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGR 260

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE---DSIKVFSRMAPRNSVSWNSMIAAFA 435
           Q H  +IK+ F  N  V +GLI+ YSKCG  +   DS KVF  +   + V WN+MI+ ++
Sbjct: 261 QFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYS 320

Query: 436 RHGN-GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            +     +A++ + +M+  G  P D +F+ +  ACS++   ++  +      + H  S R
Sbjct: 321 MNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNR 380

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
                 ++ +  ++G L +AR   +RMP         A+   C I G ++ G +  E L 
Sbjct: 381 ISVNNALISLYYKSGNLQDARWVFDRMP------ELNAVSFNCMIKGYAQHG-HGTEALL 433

Query: 555 LAQP--DS---PAPYILMANIYSCS--GRWKERAKAIKRMKE 589
           L Q   DS   P     +A + +C+  G+  E  +    MKE
Sbjct: 434 LYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 37/302 (12%)

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCG----------SVED------------ 310
           L  G+ +H +  K  + S   + +  +++YSKCG          S E+            
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83

Query: 311 ---------AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
                    A Q+F+   + D VS   ++ G+A       AM LF +M K G E+D   +
Sbjct: 84  YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           S ++        + L KQ+H   +   F S   VNN  +  YSK G L +++ VF  M  
Sbjct: 144 SGLIA--ACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDE 201

Query: 422 -RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ VSWNSMI A+ +H  G KAL LY+EM  +G +    T  S+L+A + +  +  G +
Sbjct: 202 LRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQ 261

Query: 481 FLKSMTEV--HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           F   + +   H+ S             G    + ++    + + + PD++VW  ++   S
Sbjct: 262 FHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISGYS 320

Query: 539 IH 540
           ++
Sbjct: 321 MN 322



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 44/209 (21%)

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL-------------------- 409
            +  L  GK +H+L +KS   S+ +++N  +N+YSKCG L                    
Sbjct: 20  AERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNV 79

Query: 410 ------EDSI-----KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
                 +DS      ++F  +   ++VS+N++I+ +A     F A+ L++ M+  G E  
Sbjct: 80  IVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVD 139

Query: 459 DVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIE 513
             T   L+ A C  V L+ +   F         +S   + Y+ V    V    + GLL E
Sbjct: 140 GFTLSGLIAACCDRVDLIKQLHCF--------SVSGGFDSYSSVNNAFVTYYSKGGLLRE 191

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGD 542
           A S    M    D + W +++ A   H +
Sbjct: 192 AVSVFYGMDELRDEVSWNSMIVAYGQHKE 220


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/486 (37%), Positives = 286/486 (58%), Gaps = 1/486 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +++AC R      ++ IH  +    +   V + N+LI  Y KCG+ +  R+VF  M  R+
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           + +WT++I+G  QN + +E L L   M  G   PN  T+ S + A     +   G QIH 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K     D+ + SAL+DMY++CG ++ A  +F+  E  +GVS   ++ GFA+ G  E 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            + +F +M + G E      S+V        +L  GK +H+ +IKS    + FV N +++
Sbjct: 250 TLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILD 309

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G + D+ KVF R+  ++ V+WNSM+ AFA++G G +A+  +EEM+  GV    +T
Sbjct: 310 MYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQIT 369

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FLS+L ACSH GLV +G ++   M E + + P  +HY  VVD++GRAGLL +A  FI +M
Sbjct: 370 FLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP   VW ALLG+C +H ++++G++AA+ +F   PD   P +L+ NIY+ +G+W   A
Sbjct: 429 PMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAA 488

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +  K MK  GV KE   SW+EIE  VH FV +D  HP+++ I+    E+   +   GYVP
Sbjct: 489 RVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVP 548

Query: 642 NKRFIL 647
           N  ++L
Sbjct: 549 NTDYVL 554



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 163/283 (57%), Gaps = 4/283 (1%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y S + AC+  ++L + R IH  L        + ++++L+ +Y KCG+V DA ++F+   
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D  S T ++ G+AQN   +EA+ L   M++   + +    +++L   G   S G+G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH+L +K D+  + +V + L++MY++CG ++ +I VF ++  +N VSWN++IA FAR G+
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHY 498
           G   L ++ EM+  G E T  T+ S+  A + +G + +G      M +   R+S    + 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN- 305

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             ++DM  ++G +I+AR   +R+  K DV+ W ++L A + +G
Sbjct: 306 -TILDMYAKSGSMIDARKVFDRVD-KKDVVTWNSMLTAFAQYG 346



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 218/465 (46%), Gaps = 37/465 (7%)

Query: 23  PFITKIIQD---PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT---FEP 76
           P +T  + D   P ++++ ++ D       L S+ A+E      P L+ S I     +  
Sbjct: 28  PSLTASVADIPVPAAASTGIIRDT------LDSVDARE--LAATPRLYHSLITACARYRS 79

Query: 77  FDNQNVYNV-------PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            D+    +          +  + NSL+  Y KC  + +A ++FD MP RD  SW ++++G
Sbjct: 80  LDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDMCSWTSLIAG 139

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           + +N   D   G     L  G ++ +  +F  +L A   S  S + + IH L     + +
Sbjct: 140 YAQNDMPDEALGLLPGMLR-GRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHD 198

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V VG+AL+  Y +CG       VF ++  +N ++W A+I+G  +    E  L +F +M 
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                    TY S   A +G+ AL +G+ +H  + K   +    + + ++DMY+K GS+ 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA ++F+  ++ D V+   +L  FAQ G   EA+  F +M K G+ ++     ++L    
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS- 426
               +  GKQ   ++   ++   P +++   ++++  + G L D++    +M  + + + 
Sbjct: 379 HGGLVKEGKQYFDMM--KEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAV 436

Query: 427 WNSMIAAFARHGNG----FKALELYEEMKLEGVEPTDVTFLSLLH 467
           W +++ +   H N     F A  ++E      ++P D     LL+
Sbjct: 437 WGALLGSCRMHKNAKIGQFAADHVFE------LDPDDTGPPVLLY 475


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 209/652 (32%), Positives = 332/652 (50%), Gaps = 56/652 (8%)

Query: 42  DNYVDI-SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           D  ++I + +L    K  +  LG  +HA  +          V  V     + + LL  Y 
Sbjct: 7   DECIEIYASILQKCRKLYNLRLGFQVHAQLV----------VNGVDVCEFLGSRLLEVYC 56

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           +   + +A ++FD M  R+  SW  ++  +   G+++     F   +  G  + D   F 
Sbjct: 57  QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFP 115

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +  AC   +   V K ++  +   G+E    V  +++  + KCG     R+ F E+  +
Sbjct: 116 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V  W  ++SG      +++ L +F KM L  + PNS+T  S+V AC+ L  L  GR+IH
Sbjct: 176 DVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 235

Query: 281 GILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL--VGFAQNG 337
           G   K+  L SDL + ++L+D Y+KC SVE A + F   ++ D VS   +L   GF Q G
Sbjct: 236 GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYG 295

Query: 338 FEEEAMQLFVKMVKA-----------------------------------------GIEI 356
             + A++ F +M  A                                          +E+
Sbjct: 296 DGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEV 355

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +   + + L       +L  GK+IH  II+    +  F+ N LI+MY +CG ++ S ++F
Sbjct: 356 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 415

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  R+ VSWN MI+ +  HG G  A+ L+++ +  G++P  +TF +LL ACSH GL+ 
Sbjct: 416 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 475

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G ++ K M   + + P  E YAC+VD++ RAG   E   FIE+MP +P+  VW +LLGA
Sbjct: 476 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 535

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C IH + ++ +YAA  LF  +P S   Y+LMANIYS +GRW++ AK    MKE GV K  
Sbjct: 536 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 595

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G SWIE+++++HSFVV D  HP  + I   +  L   + + GYVP+  F+L 
Sbjct: 596 GCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQ 647


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 334/635 (52%), Gaps = 46/635 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L+   +   + LG  +H   +K            + +   I N+L+  Y KC  +   +
Sbjct: 202 ILTACIRNMDYQLGSQVHGIVVK----------LGLLSCVFICNALMGLYCKCGFLDLVL 251

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LF++MP RD  SWNT++S  ++  ++D  F +F+        ++D  S + +L+AC  S
Sbjct: 252 RLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGS 311

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT--- 226
              +  + +H L    G E  ++V ++LI  Y KCGS++    +F  M +R+VITWT   
Sbjct: 312 VKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMI 371

Query: 227 ----------------------------AVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
                                       AV++GL +N      L+LF++M    +  +  
Sbjct: 372 TSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDC 431

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EF 317
           T  S + AC  L++    +QI G + K  + S+ CIE+AL+DMY++CG +EDA +IF + 
Sbjct: 432 TLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQR 491

Query: 318 AEELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLG 375
           + E D  +M T ++ G+A+NG   EA+ LF      G I +D  M +++L + G      
Sbjct: 492 SLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHE 551

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           +G Q+H   +KS   +   V N  ++MYSKC +++D+++VF+ M  ++ VSWN ++A   
Sbjct: 552 MGMQMHCHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHV 611

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VGLVNKGMEFLKSMTEVHRISP 493
            H  G KAL ++++M+  G++P  +TF  ++ A  H  + LV+       SM   H I P
Sbjct: 612 LHWQGDKALGIWKKMEKAGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKP 671

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             EHYA  + ++GR GLL EA   I  MP++PDV VW+ALL +C I+ +  + K AA  +
Sbjct: 672 TLEHYASFISVLGRWGLLEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNI 731

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P  P  YIL +N+YS SGRW    K  + M+E G  K    SWI  E ++HSF   
Sbjct: 732 LAVEPKDPLSYILKSNLYSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYAR 791

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ HPQ   I+  L  L+   +  GYVP+  F+L 
Sbjct: 792 DRSHPQGKDIYSGLEILILECLKVGYVPDTSFVLQ 826



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 259/550 (47%), Gaps = 56/550 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL +S + G   L  ++HA F+K  E               + N+L+S YLK   +R+A 
Sbjct: 103 LLRLSTRYGDPDLARAVHAQFLKLEEDI------------FLGNALISAYLKLGLVRDAD 150

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F  +   + VS+  ++SGF ++   D     F   L+ G  + ++ +F  IL+AC R+
Sbjct: 151 KVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFAMLDSGI-EPNEYTFVAILTACIRN 209

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               +   +H +V   G    V + NAL+  Y KCG      ++F EM  R++ +W  VI
Sbjct: 210 MDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVI 269

Query: 230 SGLVQNQLYEEGLKLFVKMHL--GL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           S LV+   Y+E    F  M L  GL ++  SL+ L  + AC+G     +G+Q+H +  K+
Sbjct: 270 SSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTL--LTACAGSVKPMKGQQLHALALKV 327

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT------------------- 327
            L+S L + S+L+  Y+KCGS  D   +FE     D ++ T                   
Sbjct: 328 GLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVF 387

Query: 328 ------------VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                        +L G ++N     A++LF++M++ G+EI    +++++   G+  S  
Sbjct: 388 NKMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFK 447

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAA 433
           + +QI   ++K    SN  +   L++MY++CG +ED+ K+F + +  N  +    SMI  
Sbjct: 448 VSQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICG 507

Query: 434 FARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           +AR+G   +A+ L+   + EG    D V   S+L  C  +G    GM+      +   I+
Sbjct: 508 YARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLIT 567

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAA 550
                 A  V M  +   + +A      M ++ D++ W  L+    +H  GD  +G +  
Sbjct: 568 ETGVGNA-TVSMYSKCWNMDDAVRVFNTMNMQ-DIVSWNGLVAGHVLHWQGDKALGIWKK 625

Query: 551 EKLFLAQPDS 560
            +    +PDS
Sbjct: 626 MEKAGIKPDS 635


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 325/599 (54%), Gaps = 19/599 (3%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           A+ G   LG  +H   IK FE  ++           I N+LL+ Y     + ++ +LF+ 
Sbjct: 266 AELGSLKLGKQIHQLAIK-FEFVED---------LYILNALLNMYSNNGSLESSHQLFES 315

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           +P RD   WN+M+S +   G  +     F R    G  + D+ +  I+LS C+     L+
Sbjct: 316 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKK-DERTVVIMLSMCEELASGLL 374

Query: 175 S-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             K +H  V   G   + ++GNAL++ Y +     S +K+F  M+  ++I+W  +I  L 
Sbjct: 375 KGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALA 434

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           +N L  +  +LF +M    I PNS T +S + AC  +  L  GR IHG + K +++ +  
Sbjct: 435 RNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQP 494

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +AL DMY  CG    A  +FE   + D +S   ++  + +N    +A+ LF +M+   
Sbjct: 495 LRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMIS-- 552

Query: 354 IEIDPNMVSA--VLGVFGVDTSLGLGKQIHSLIIKSDFTS--NPFVNNGLINMYSKCGDL 409
            E +PN V+   VL  F    +L  G+ +H+ + +  F+   +  + N  I MY++CG L
Sbjct: 553 -EAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSL 611

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + +  +F  +  RN +SWN+MIA +  +G G  A+  + +M  +G  P  VTF+S+L AC
Sbjct: 612 QSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSAC 671

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           SH G +  G++   SM +   ++P   HY+C+VD++ R G + EAR FI+ MP++PD  V
Sbjct: 672 SHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASV 731

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W+ALL +C  + D++  K   EKL   +P +   Y+L++N+Y+ +G W E  +    +KE
Sbjct: 732 WRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKE 791

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G+ K  GISWI ++ QVH F   D+ HPQ+D I+  L+ LL  M + GY P+ R++ H
Sbjct: 792 KGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGYDPDLRWVFH 850



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/517 (29%), Positives = 250/517 (48%), Gaps = 28/517 (5%)

Query: 28  IIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPN 87
           I+   T   S  VL N   +  +L   A +     G S+H S   T          ++ +
Sbjct: 37  ILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGT----------DLMD 86

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
              +  +++ FY KC  + +A  +FD M  RD V WN MV G++       G+G ++ ++
Sbjct: 87  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYV-------GWGCYEEAM 139

Query: 148 ----ELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITS 200
               E+G   L   S T++  L AC+ +    + + +H      G ++    V  ALI  
Sbjct: 140 LLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGF 199

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y +         +F  M VRN+++W A+ISG      Y + L+LFV+M +  +  + +T 
Sbjct: 200 YLRFDMRVLPL-LFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 258

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           L +V AC+ L +L  G+QIH +  K     DL I +AL++MYS  GS+E + Q+FE    
Sbjct: 259 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 318

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF-GVDTSLGLGKQ 379
            D      ++  +A  G  EEAM LF++M   G++ D   V  +L +   + + L  GK 
Sbjct: 319 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 378

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+ +IKS    +  + N L++MY++   +E   K+F RM   + +SWN+MI A AR+  
Sbjct: 379 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTL 438

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A EL+E M+   ++P   T +S+L AC  V  ++ G   +      H I        
Sbjct: 439 RAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRS-IHGYVMKHSIEINQPLRT 497

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            + DM    G    AR   E  P + D++ W A++ +
Sbjct: 498 ALADMYMNCGDEATARDLFEGCPDR-DLISWNAMIAS 533



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 46/385 (11%)

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           ++++++   W +VI      +  +  L  + +M    + PN+ T    + AC+   A+  
Sbjct: 12  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 71

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+ IH  +    L  D+ + +A++D Y KCG VEDA  +F+   + D V    ++ G+  
Sbjct: 72  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 131

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPN---MVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FTS 391
            G  EEAM L  +M +  +   PN   MV+ +L   G  + L LG+ +H   +++  F S
Sbjct: 132 WGCYEEAMLLVREMGRENLR--PNSRTMVALLLACEGA-SELRLGRGVHGYCLRNGMFDS 188

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           NP V   LI  Y +  D+     +F  M  RN VSWN+MI+ +   G+ FKALEL+ +M 
Sbjct: 189 NPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML 247

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           ++ V+   VT L  + AC+ +G +  G        ++H+++ + E               
Sbjct: 248 VDEVKFDCVTMLVAVQACAELGSLKLG-------KQIHQLAIKFE--------------- 285

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANI 570
                F+E      D+ +  ALL   S +G  E    ++ +LF + P+  AP +  M + 
Sbjct: 286 -----FVE------DLYILNALLNMYSNNGSLE----SSHQLFESVPNRDAPLWNSMISA 330

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKE 595
           Y+  G  +E      RM+  GV K+
Sbjct: 331 YAAFGCHEEAMDLFIRMQSEGVKKD 355


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 287/494 (58%), Gaps = 6/494 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +++ ++  C         K +H  ++  GYE ++ V N L+  Y K         +F
Sbjct: 54  DAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLF 113

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            EM  RNV++WT +IS    N+L ++ LK  + M    + PN  TY S + AC GL  L 
Sbjct: 114 DEMPERNVVSWTTMISAY-SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNL- 171

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             RQ+H  + K  L+SD+ + SAL+D+YSK   +++A  +F+     D V    I+ GFA
Sbjct: 172 --RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN    EA+ LF +M +AG   D   +++VL        L LG+Q+H  ++K  F  +  
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLI 287

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN LI+MY KCG LED+   FSRM  ++ +SW++M+A  A++G   +ALEL+E MK  G
Sbjct: 288 LNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
             P  +T L +L ACSH GLV KG  + +SM ++  + P  EHY C++D++GRAG L EA
Sbjct: 348 SRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEA 407

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              I  M  +PD + W+ LLGAC +H + ++  YAA+K+   +P+    YIL++NIY+ +
Sbjct: 408 VKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANT 467

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            RW++ A+  K M   G+ K  G SWIE++KQ+H F++ D  HP+ + I   L +L+  +
Sbjct: 468 QRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERV 527

Query: 635 IDEGYVPNKRFILH 648
           +  GYVP+  F+L 
Sbjct: 528 MGVGYVPDTNFVLQ 541



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 136/458 (29%), Positives = 223/458 (48%), Gaps = 38/458 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHAS-FIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           V  + +  S L+   +  G    G  +H   F K +EP              + N+LL+ 
Sbjct: 51  VFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEP-----------KMFVVNTLLNM 99

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF---LRNGEFDMGFGFFKRSLELGFYQLD 155
           Y+K + +  A  LFD+MP R+ VSW TM+S +   L +         F+  +    +   
Sbjct: 100 YVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMF--- 156

Query: 156 QASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             +++ +L ACD     L + + +HC +   G E +V V +ALI  Y K     +   VF
Sbjct: 157 --TYSSVLRACD----GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVF 210

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            EM  R+++ W ++I G  QN    E L LF +M       +  T  S + AC+GL  L 
Sbjct: 211 DEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLE 270

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            GRQ+H  +  L    DL + +AL+DMY KCGS+EDA   F    E D +S + ++ G A
Sbjct: 271 LGRQVH--VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLA 328

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSN 392
           QNG+  +A++LF  M ++G    PN ++ VLGV    +  GL ++   +   +K  F  +
Sbjct: 329 QNGYSRQALELFESMKESGSR--PNYIT-VLGVLFACSHAGLVEKGWYYFRSMKKLFGVD 385

Query: 393 PFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEE 449
           P   +   LI++  + G L++++K+   M    +SV+W +++ A   H N    L +Y  
Sbjct: 386 PGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRN--VDLAIYAA 443

Query: 450 MKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMT 486
            K+  +EP D  T++ L +  ++        E  K+MT
Sbjct: 444 KKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMT 481



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 28/213 (13%)

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
            AM+    M + G+  D    S ++       ++  GK++H  I    +    FV N L+
Sbjct: 38  RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLL 97

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           NMY K   LE++  +F  M  RN VSW +MI+A++   N  KAL+    M  EGV P   
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLND-KALKCLILMFREGVRPNMF 156

Query: 461 TFLSLLHACS--------HVGLVNKGME---FLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           T+ S+L AC         H G++  G+E   F++S                ++D+  +  
Sbjct: 157 TYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS---------------ALIDVYSKWS 201

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            L  A    + MP + D++VW +++G  + + D
Sbjct: 202 DLDNALGVFDEMPTR-DLVVWNSIIGGFAQNSD 233


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/610 (33%), Positives = 339/610 (55%), Gaps = 30/610 (4%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIK-TFEPFDNQNVYNVPNATVIWNSLLSF 98
           +L+N       L   A   + + G  LH+  I   F P       + P+ T    SL++ 
Sbjct: 7   MLNNVTKCVAFLQSCADHQNLNKGKQLHSLMITYGFSP-------SPPSIT----SLINM 55

Query: 99  YLKCDQMRNAVKLF-DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
           Y KC QM  A+ +F D    R+  ++N ++SGF+ NG    GF F+K+ + L     D+ 
Sbjct: 56  YSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKK-MRLEGVMPDKY 114

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F  ++  C   E+  V K+  CL+ + G E +V VG+AL+ +Y K GS    +KVFGE+
Sbjct: 115 TFPCVVRTC--CEVMEVKKIHGCLLKM-GLELDVFVGSALVNTYLKNGSMEDAQKVFGEL 171

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN--SLTYLSSVMACSGLQALCE 275
            +R+V+ W A+I+G  +    +E L++F +MH+  + P+  ++T + SV A  G   L  
Sbjct: 172 SIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRG--DLDN 229

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+ +HGI+ K+   S + + +AL+DMY KC  + DA  IFE   E D  S   I+    Q
Sbjct: 230 GKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQ 289

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII--------KS 387
            G  +  ++LF KM+ +GI  D   ++ VL       +L  G++IH  +I        ++
Sbjct: 290 CGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDEN 349

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               N  V+N +++MY+KCG + +++K+F  M+ ++  SWN MI  +  HG   +AL ++
Sbjct: 350 GAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMF 409

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M     +P +VT + +L AC+H G V+ G  FL  M     + P  EHY CV+DM+GR
Sbjct: 410 SQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGR 469

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L +A   +++MP++ + +VW+ALLGAC +HG++E+ + AA ++   +P+    Y+LM
Sbjct: 470 AGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLM 529

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+Y   GR++E  +  K MKE  V K  G SWIE++  VH F   D+ H + + +   L
Sbjct: 530 SNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRTHSELNALTNQL 589

Query: 628 AELLRLMIDE 637
            + +  ++DE
Sbjct: 590 CD-IGFILDE 598


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 315/556 (56%), Gaps = 12/556 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M NA K+FD++P R+ V W T+++G+++N + ++    F   LE G +  
Sbjct: 21  LVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFP- 79

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
              + +I L+AC   E   + K  H  +       + ++GNAL + Y K GS  S  K F
Sbjct: 80  SNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAF 139

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E   ++VI+WT +IS    N     GL+LF++M    + PN  T  S +  CS +Q+  
Sbjct: 140 RETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSD 199

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+H +  KL  +S+L I ++L+ +Y KCG +++A  +F   E  + ++   ++ G A
Sbjct: 200 LGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHA 259

Query: 335 Q------NGFE-----EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           Q      + F       EA+ +++K+ ++G + D   +S++L V     +L  G+QIH+ 
Sbjct: 260 QAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQ 319

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            IKS F S+  V   L++MY KCG +E + K F  M+ R  +SW SMI +FARHG    A
Sbjct: 320 TIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHA 379

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L+L+E+M+L G  P  +TF+ +L ACSH G+V++ +E+ + M + ++I P  +HY C+VD
Sbjct: 380 LQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVD 439

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  R G L EA   I+RM V+P+  +W  L+  C  HG+ E+G YAAE+L   +P S   
Sbjct: 440 MFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTET 499

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+++ N+Y  + RW++ +   + MKE  V K    S I I+ +VHSF  ++++H     +
Sbjct: 500 YVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAEL 559

Query: 624 HGVLAELLRLMIDEGY 639
           H +L +L+      GY
Sbjct: 560 HTLLNDLVDRAKSLGY 575



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 196/391 (50%), Gaps = 13/391 (3%)

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           M+H  V   G  EE  V + L+  Y KCG   + RKVF  +  RNV+ WT +++G VQN 
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E  +++F  M      P++ T   ++ ACS L+++  G+Q H  + K  +  D  I +
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL  +YSK GS++ + + F    E D +S T I+     NG     ++LF++M+   +E 
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           +   +++VL +     S  LG Q+HSL  K    SN  + N L+ +Y KCG ++++  +F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 417 SRMAPRNSVSWNSMIAA-----------FARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           +RM  +N ++WN+MIA            F+    G +AL +Y ++   G +P   T  S+
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSI 300

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L  CS +  + +G +      +   +S      A +VDM  + G +  AR     M  + 
Sbjct: 301 LTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTA-LVDMYDKCGSIERARKAFLDMSTRT 359

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
            ++ W +++ + + HG S+      E + LA
Sbjct: 360 -LISWTSMITSFARHGQSQHALQLFEDMRLA 389



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 207/427 (48%), Gaps = 41/427 (9%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   HA  IK          Y + + + I N+L S Y K   + ++VK F +   +D +
Sbjct: 99  LGKQFHAFIIK----------YRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDVI 148

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIH 179
           SW T++S    NG   MG   F   +E+ F  ++   FT+  +LS C   + S +   +H
Sbjct: 149 SWTTIISACGDNGRAGMGLRLF---IEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVH 205

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ----- 234
            L    G+E  + + N+L+  Y KCG     + +F  M  +N+ITW A+I+G  Q     
Sbjct: 206 SLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLA 265

Query: 235 ------NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
                  Q   E L +++K++     P+  T  S +  CS L AL +G QIH    K   
Sbjct: 266 KDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGF 325

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            SD+ + +AL+DMY KCGS+E A + F        +S T ++  FA++G  + A+QLF  
Sbjct: 326 LSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFED 385

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI--HSLIIKSDFTSNPFVNN--GLINMYS 404
           M  AG    PN ++ V GV    +  G+  +   +  I++ ++   P +++   L++M+ 
Sbjct: 386 MRLAGFR--PNQITFV-GVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFV 442

Query: 405 KCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGN---GFKALELYEEMKLEGVEPTDV 460
           + G L+++  V  RM    N   W  +IA    HGN   GF A E   ++K    E    
Sbjct: 443 RLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTE---- 498

Query: 461 TFLSLLH 467
           T++ LL+
Sbjct: 499 TYVVLLN 505



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 11/123 (8%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L++ ++      G  +HA  IK+             +  V+  +L+  Y KC  + 
Sbjct: 297 LSSILTVCSRLAALEQGEQIHAQTIKS----------GFLSDVVVGTALVDMYDKCGSIE 346

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A K F DM  R  +SW +M++ F R+G+       F+  + L  ++ +Q +F  +L+AC
Sbjct: 347 RARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFE-DMRLAGFRPNQITFVGVLAAC 405

Query: 167 DRS 169
             +
Sbjct: 406 SHA 408


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 216/645 (33%), Positives = 331/645 (51%), Gaps = 48/645 (7%)

Query: 31   DPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
            DPTS T          +S   + S   G   LG  +HA  ++      N ++    N   
Sbjct: 430  DPTSFTL---------VSVAHACSHVRGGVRLGKQVHAYTLR------NGDLRTYTN--- 471

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
              N+L++ Y +  ++ +A  LF     +D VSWNT++S   +N  F+    +    +  G
Sbjct: 472  --NALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSS 209
              + D  +   +L AC + E   + + IHC     G   E   VG AL+  Y  C     
Sbjct: 530  V-RPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
            GR VF  +  R V  W A+++G  +N+  ++ L+LFV+M       PN+ T+ S + AC 
Sbjct: 589  GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 269  GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              +   +   IHG + K     D  +++ALMDMYS+ G VE +  IF    + D VS   
Sbjct: 649  RCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNT 708

Query: 329  ILVGFAQNGFEEEAMQLFVKMVK----------------AGIEIDPNMVS--AVLGVFGV 370
            ++ G    G  ++A+ L  +M +                 G+   PN V+   VL     
Sbjct: 709  MITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAA 768

Query: 371  DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              +LG GK+IH+  +K     +  V + L++MY+KCG L  + +VF +M  RN ++WN +
Sbjct: 769  LAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVL 828

Query: 431  IAAFARHGNGFKALELYEEMKLEG------VEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
            I A+  HG G +ALEL+  M   G      + P +VT++++  ACSH G+V++G+    +
Sbjct: 829  IMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHT 888

Query: 485  MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD-VLVWQALLGACSIHGDS 543
            M   H + PR +HYAC+VD++GR+G + EA   I  MP   + V  W +LLGAC IH   
Sbjct: 889  MKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSV 948

Query: 544  EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
            E G+ AA+ LF+ +P+  + Y+LM+NIYS +G W +     K+MKEMGV KE G SWIE 
Sbjct: 949  EFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEH 1008

Query: 604  EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
              +VH F+  D  HPQ+  +H  L  L + M  EGYVP+   +LH
Sbjct: 1009 GDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLH 1053



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/531 (28%), Positives = 251/531 (47%), Gaps = 48/531 (9%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DN+     +L  +A      LG  +HA   K          +  P++  + NSL++ Y K
Sbjct: 329 DNFA-FPAVLKAAAAVHDLCLGKQIHAHVFKFG--------HAPPSSVAVANSLVNMYGK 379

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  +  A ++FDD+P RD VSWN+M++   R  E+++    F+  L      +D  SFT+
Sbjct: 380 CGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLS---ENVDPTSFTL 436

Query: 162 --ILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
             +  AC      + + K +H      G +      NAL+T Y + G  +  + +FG   
Sbjct: 437 VSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFD 495

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++++W  VIS L QN  +EE L     M +  + P+ +T  S + ACS L+ L  GR+
Sbjct: 496 GKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGRE 555

Query: 279 IHGILWKLALQSDLCIE-----SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           IH      AL++   IE     +AL+DMY  C   +    +F+            +L G+
Sbjct: 556 IHC----YALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGY 611

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           A+N F+++A++LFV+M+    E  PN  +  +VL            + IH  I+K  F  
Sbjct: 612 ARNEFDDQALRLFVEMISES-EFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGK 670

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V N L++MYS+ G +E S  +F RM  R+ VSWN+MI      G    AL L  EM+
Sbjct: 671 DKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQ 730

Query: 452 LEGVE------------------PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
               E                  P  VT +++L  C+ +  + KG E + +     +++ 
Sbjct: 731 RRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQKLAM 789

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                + +VDM  + G L  A    ++MP++ +V+ W  L+ A  +HG  E
Sbjct: 790 DVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHGKGE 839



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 155/330 (46%), Gaps = 25/330 (7%)

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R+   W  ++     +  + + +  +  M      P++  + + + A + +  LC G+QI
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 280 HGILWKL--ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           H  ++K   A  S + + ++L++MY KCG +  A Q+F+   + D VS   ++    +  
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR-- 410

Query: 338 FEEEAMQLFVKMVKAGIEIDP---NMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNP 393
           FEE  + L +  +     +DP    +VS       V   + LGKQ+H+  +++ D  +  
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRT-- 468

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           + NN L+ MY++ G + D+  +F     ++ VSWN++I++ +++    +AL     M ++
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-------ACVVDMVG 506
           GV P  VT  S+L ACS        +E L+   E+H  + R             +VDM  
Sbjct: 529 GVRPDGVTLASVLPACSQ-------LERLRIGREIHCYALRNGDLIENSFVGTALVDMYC 581

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                 + R   + + V+  V VW ALL  
Sbjct: 582 NCKQPKKGRLVFDGV-VRRTVAVWNALLAG 610


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 330/600 (55%), Gaps = 11/600 (1%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ N   IS +L+  A      LG  +H   +K     D  +           N+L+  Y
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSA----------NALVDMY 228

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K  ++  AV +F D+   D VSWN +++G + +   D+           G  + +  + 
Sbjct: 229 SKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSG-TRPNMFTL 287

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           +  L AC       + + +H  +       ++     L+  Y KC      R+ +  M  
Sbjct: 288 SSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK 347

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +++I W A+ISG  Q   + + + LF KM    I+ N  T  + + + + LQA+   +QI
Sbjct: 348 KDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI 407

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H I  K  + SD  + ++L+D Y KC  +++A +IFE     D V+ T ++  ++Q G  
Sbjct: 408 HTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDG 467

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++L+++M  A I+ DP + S++L      ++   GKQ+H   IK  F  + F +N L
Sbjct: 468 EEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSL 527

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +NMY+KCG +ED+ + FS +  R  VSW++MI  +A+HG+G +AL L+ +M  +GV P  
Sbjct: 528 VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNH 587

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +T +S+L AC+H GLVN+G ++ + M  +  I P  EHYAC++D++GR+G L EA   + 
Sbjct: 588 ITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVN 647

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            +P + D  VW ALLGA  IH + E+G+ AA+ LF  +P+    ++L+ANIY+ +G W+ 
Sbjct: 648 SIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWEN 707

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            AK  K MK+  V KE G+SWIEI+ +V++F+V D+ H ++D I+  L +L  L+   GY
Sbjct: 708 VAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGY 767



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 145/493 (29%), Positives = 258/493 (52%), Gaps = 26/493 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y KC +   A KL D+    D VSW++++SG+++NG  +     F     LG  
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGV- 78

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++ +F  +L AC       + + +H +  + G+E +  V N L+  Y KCG     R+
Sbjct: 79  KCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRR 138

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +FG +  RNV++W A+ S  VQ++L  E + LF +M    I PN  +    + AC+GLQ 
Sbjct: 139 LFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQE 198

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR+IHG++ K+ L  D    +AL+DMYSK G +E A  +F+     D VS   I+ G
Sbjct: 199 GDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAG 258

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              +   + A+ L  +M  +G    PNM  +S+ L          LG+Q+HS +IK D  
Sbjct: 259 CVLHDCNDLALMLLDEMKGSGTR--PNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAH 316

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ F   GL++MYSKC  ++D+ + +  M  ++ ++WN++I+ +++ G+   A+ L+ +M
Sbjct: 317 SDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKM 376

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDM 504
             E ++    T  ++L + +        ++ +K   ++H IS ++  Y+       ++D 
Sbjct: 377 FSEDIDFNQTTLSTVLKSVA-------SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDT 429

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---P 561
            G+   + EA    E    + D++ + +++ A S +GD E     A KL+L   D+   P
Sbjct: 430 YGKCNHIDEASKIFEERTWE-DLVAYTSMITAYSQYGDGE----EALKLYLQMQDADIKP 484

Query: 562 APYILMANIYSCS 574
            P+I  + + +C+
Sbjct: 485 DPFICSSLLNACA 497



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 192/359 (53%), Gaps = 6/359 (1%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  + ++ N L+T Y KC      RK+  E    +V++W++++SG VQN   EE L +F
Sbjct: 11  GFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVF 70

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M L  +  N  T+ S + ACS  + L  GR++HG+      +SD  + + L+ MY+KC
Sbjct: 71  NEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKC 130

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G ++D+ ++F    E + VS   +   + Q+    EA+ LF +MV++GI  +   +S +L
Sbjct: 131 GLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIIL 190

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                     LG++IH L++K     + F  N L++MYSK G++E ++ VF  +A  + V
Sbjct: 191 NACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVV 250

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN++IA    H     AL L +EMK  G  P   T  S L AC+ +G    G +   S+
Sbjct: 251 SWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL 310

Query: 486 TEVHRISPRAEHYACV--VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
               ++   ++ +A V  VDM  +  ++ +AR   + MP K D++ W AL+   S  GD
Sbjct: 311 I---KMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGD 365



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 227/464 (48%), Gaps = 48/464 (10%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V    V WN+L S Y++ +    AV LF +M          + SG + N EF        
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEM----------VRSGIMPN-EF-------- 184

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                        S +IIL+AC   +   + + IH L+   G + +    NAL+  Y K 
Sbjct: 185 -------------SISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKA 231

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G       VF ++   +V++W A+I+G V +   +  L L  +M      PN  T  S++
Sbjct: 232 GEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSAL 291

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+ +     GRQ+H  L K+   SDL     L+DMYSKC  ++DA + ++   + D +
Sbjct: 292 KACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDII 351

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +   ++ G++Q G   +A+ LF KM    I+ +   +S VL       ++ + KQIH++ 
Sbjct: 352 AWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTIS 411

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IKS   S+ +V N L++ Y KC  ++++ K+F      + V++ SMI A++++G+G +AL
Sbjct: 412 IKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEAL 471

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC---- 500
           +LY +M+   ++P      SLL+AC+++    +G +       VH I      + C    
Sbjct: 472 KLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL-----HVHAIKFG---FMCDIFA 523

Query: 501 ---VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              +V+M  + G + +A      +P +  ++ W A++G  + HG
Sbjct: 524 SNSLVNMYAKCGSIEDADRAFSEIPNRG-IVSWSAMIGGYAQHG 566



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 146/267 (54%), Gaps = 10/267 (3%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           ++H  L K     D  + + L+ +YSKC     A ++ + + ELD VS + +L G+ QNG
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
           F EEA+ +F +M   G++ +     +VL    +   L +G+++H + + + F S+ FV N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L+ MY+KCG L+DS ++F  +  RN VSWN++ + + +     +A+ L++EM   G+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 458 TDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            + +   +L+AC+ +   + G +     LK   ++ + S  A     +VDM  +AG +  
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANA-----LVDMYSKAGEIEG 236

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIH 540
           A +  + +   PDV+ W A++  C +H
Sbjct: 237 AVAVFQDI-AHPDVVSWNAIIAGCVLH 262


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/587 (32%), Positives = 306/587 (52%), Gaps = 30/587 (5%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN+LL  Y K   +      F+ +P RD V+WN ++ G+  +G        +   +    
Sbjct: 75  WNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS 134

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
             L + +   +L     +    + K IH  V   G+E  + VG+ L+  Y   G  S  +
Sbjct: 135 ANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAK 194

Query: 212 KVFGEMRVRNVI------------------------------TWTAVISGLVQNQLYEEG 241
           KVF  +  RN +                              +W A+I GL QN L +E 
Sbjct: 195 KVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEA 254

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           ++ F +M +  +  +   + S + AC GL A+ EG+QIH  + +   Q  + + SAL+DM
Sbjct: 255 IECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDM 314

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC  +  A  +F+  ++ + VS T ++VG+ Q G  EEA+++F+ M ++GI+ D   +
Sbjct: 315 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTL 374

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
              +      +SL  G Q H   I S       V+N L+ +Y KCGD++DS ++F+ M  
Sbjct: 375 GQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNV 434

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R++VSW +M++A+A+ G   + ++L+++M   G++P  VT   ++ ACS  GLV KG  +
Sbjct: 435 RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRY 494

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            K MT  + I P   HY+C++D+  R+G L EA  FI  MP  PD + W  LL AC   G
Sbjct: 495 FKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKG 554

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+GK+AAE L    P  PA Y L+++IY+  G+W   A+  + M+E  V KE G SWI
Sbjct: 555 NLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWI 614

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + + ++HSF  DD+  P  D I+  L EL   +ID GY P+  F+ H
Sbjct: 615 KWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHH 661



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 228/451 (50%), Gaps = 32/451 (7%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIK-TFEPF------------------DNQNV-YN 84
           V +  +L +S+  GH  LG  +H   IK  FE +                  D + V Y 
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199

Query: 85  VPNA-TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           + +  TV++NSL+   L C  + +A++LF  M  +D+VSW  M+ G  +NG        F
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGME-KDSVSWAAMIKGLAQNGLAKEAIECF 258

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            R +++   ++DQ  F  +L AC         K IH  +    +++ + VG+ALI  Y K
Sbjct: 259 -REMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK 317

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           C      + VF  M+ +NV++WTA++ G  Q    EE +K+F+ M    I+P+  T   +
Sbjct: 318 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQA 377

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC+ + +L EG Q HG      L   + + ++L+ +Y KCG ++D+ ++F      D 
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS T ++  +AQ G   E +QLF KMV+ G++ D   ++ V+        +  G++   L
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKL 497

Query: 384 IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN- 439
           +  S++   P + +   +I+++S+ G LE++++  + M  P +++ W ++++A    GN 
Sbjct: 498 MT-SEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNL 556

Query: 440 --GFKALELYEEMKLEGVEPTDVTFLSLLHA 468
             G  A E    ++L+   P   T LS ++A
Sbjct: 557 EIGKWAAE--SLIELDPHHPAGYTLLSSIYA 585



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 50/325 (15%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           Q +L   + L+  YSK G + +    FE   + DGV+  V++ G++ +G    A++ +  
Sbjct: 69  QPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 128

Query: 349 MVKAGIEIDPNMVSAVL-GVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           M++   +   N+    L  +  + +S G   LGKQIH  +IK  F S   V + L+ MY+
Sbjct: 129 MMR---DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 405 KCGDLEDSIKVFSRMAPRN------------------------------SVSWNSMIAAF 434
             G + D+ KVF  +  RN                              SVSW +MI   
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGL 245

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A++G   +A+E + EMK++G++     F S+L AC  +G +N+G +    +    R + +
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACII---RTNFQ 302

Query: 495 AEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
              Y  + ++DM  +   L  A++  +RM  K +V+ W A++      G +E     A K
Sbjct: 303 DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYGQTGRAE----EAVK 357

Query: 553 LFLAQPDS---PAPYILMANIYSCS 574
           +FL    S   P  Y L   I +C+
Sbjct: 358 IFLDMQRSGIDPDHYTLGQAISACA 382



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 32/240 (13%)

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N F  N L+  YSK G + +    F ++  R+ V+WN +I  ++  G    A++ Y  M 
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 452 LE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVG 506
            +     T VT +++L   S  G V+ G +    +     I    E Y  V    + M  
Sbjct: 131 RDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQV-----IKLGFESYLLVGSPLLYMYA 185

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLG---ACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
             G + +A+     +  +  V+ + +L+G   AC +  D       A +LF         
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVM-YNSLMGGLLACGMIED-------ALQLFRGMEKDSVS 237

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKET-----------GISWIEIEKQVHSFVV 612
           +  M    + +G  KE  +  + MK  G+  +            G+  I   KQ+H+ ++
Sbjct: 238 WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACII 297


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 306/540 (56%), Gaps = 5/540 (0%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           M  AV +F  +   D+ ++N M+ GF            FK   E    Q D+ +F  IL 
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHE-NSVQPDEFTFPCILK 132

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C R +     + IH L+  CG+     V N LI  Y  CG     R+VF EM  RNV T
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W ++ +G  ++  +EE +KLF +M    I  + +T +S + AC  L  L  G  I+  + 
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVE 252

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           +  L+ +  + ++L+DMY+KCG V+ A ++F+  +  D V+ + ++ G++Q     EA+ 
Sbjct: 253 EKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALD 312

Query: 345 LFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           LF +M KA I  DPN ++  ++L    V  +L  GK +H  I K        +   L++ 
Sbjct: 313 LFHEMQKANI--DPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDF 370

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG +E SI+VF +M  +N +SW  +I   A +G G KALE +  M  + VEP DVTF
Sbjct: 371 YAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTF 430

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + +L ACSH GLV++G +   SM+    I PR EHY C+VD++GRAGL+ EA  FI+ MP
Sbjct: 431 IGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMP 490

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++P+ ++W+ LL +C +H + E+G+ + ++L + +P     YIL++NIY+  GRW++  K
Sbjct: 491 IQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALK 550

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               MKE G+ K  G S IE++  +H F  +D +H Q++ I+  + ++++ +   GYVPN
Sbjct: 551 VRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPN 610



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 209/388 (53%), Gaps = 18/388 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y  C ++  A ++FD+M  R+  +WN+M +G+ ++G ++     F   LEL 
Sbjct: 161 VKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD 220

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D+ +   +L+AC R     + + I+  V   G +   T+  +L+  Y KCG   + 
Sbjct: 221 I-RFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTA 279

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F +M  R+V+ W+A+ISG  Q     E L LF +M    I+PN +T +S + +C+ L
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVL 339

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+ +H  + K  ++  + + +ALMD Y+KCGSVE + ++F      + +S TV++
Sbjct: 340 GALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLI 399

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII--KSD 388
            G A NG  ++A++ F  M++  +E  PN V+  +GV    +  GL  +   L +    D
Sbjct: 400 QGLASNGQGKKALEYFYLMLEKNVE--PNDVT-FIGVLSACSHAGLVDEGRDLFVSMSRD 456

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALE 445
           F   P + +   ++++  + G +E++ +    M  + N+V W +++A+   H N    +E
Sbjct: 457 FGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKN----VE 512

Query: 446 LYEE--MKLEGVEPT---DVTFLSLLHA 468
           + EE   +L  +EPT   D   LS ++A
Sbjct: 513 IGEESLKQLIILEPTHSGDYILLSNIYA 540



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 2/232 (0%)

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
           S++ A  IF   +E D  +  +++ GF       EA+ LF +M +  ++ D      +L 
Sbjct: 73  SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           V     +L  G+QIH+LI+K  F S+ FV N LI+MY+ CG++E + +VF  M+ RN  +
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WNSM A + + GN  + ++L+ EM    +   +VT +S+L AC  +  +  G E++    
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG-EWINRYV 251

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           E   +         +VDM  + G +  AR   ++M  + DV+ W A++   S
Sbjct: 252 EEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISGYS 302



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 157/347 (45%), Gaps = 58/347 (16%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N T+I  SL+  Y KC Q+  A +LFD M  RD V+W+ M+SG+ +          F   
Sbjct: 259 NPTLI-TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH-- 315

Query: 147 LELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
            E+    +D    T+  ILS+C         K +H  +     +  VT+G AL+  Y KC
Sbjct: 316 -EMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKC 374

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           GS  S  +VFG+M V+NV++WT +I GL  N   ++ L+ F  M    + PN +T++  +
Sbjct: 375 GSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVL 434

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIE------SALMDMYSKCGSVEDAWQIFEFA 318
            ACS    + EGR +      +++  D  IE        ++D+  + G +E+A+Q     
Sbjct: 435 SACSHAGLVDEGRDLF-----VSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQ----- 484

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGL 376
                                      F+K     + I PN V    +L    V  ++ +
Sbjct: 485 ---------------------------FIK----NMPIQPNAVIWRTLLASCKVHKNVEI 513

Query: 377 GKQ-IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           G++ +  LII     S  ++   L N+Y+  G  ED++KV   M  +
Sbjct: 514 GEESLKQLIILEPTHSGDYI--LLSNIYASVGRWEDALKVRGEMKEK 558


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/587 (32%), Positives = 312/587 (53%), Gaps = 30/587 (5%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN+LL  Y K   +    + F+ +P RD V+WN ++ G+  +G        +   ++   
Sbjct: 72  WNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFS 131

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
             L + +   +L     +    + K IH  V   G+E  + VG+ L+  Y K G  S  +
Sbjct: 132 SNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAK 191

Query: 212 KVFGEMRVRNVI------------------------------TWTAVISGLVQNQLYEEG 241
           KVF  +  RN +                              +W+A+I GL QN + +E 
Sbjct: 192 KVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEA 251

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           ++ F +M +  +  +   + S + AC GL A+ +GRQIH  + +  LQ  + + SAL+DM
Sbjct: 252 IECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDM 311

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC  +  A  +F+  ++ + VS T ++VG+ Q G   EA+++F+ M ++GI+ D   +
Sbjct: 312 YCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTL 371

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
              +      +SL  G Q H   I +       V+N L+ +Y KCGD++DS ++F+ M  
Sbjct: 372 GQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNV 431

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ VSW +M++A+A+ G   +A++L+++M   G++P  VT   ++ ACS  GLV KG  +
Sbjct: 432 RDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRY 491

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M   + I P   HY+C++D+  R+G + EA  FI  MP +PD + W  LL AC   G
Sbjct: 492 FELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKG 551

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+GK+AAE L    P  PA Y L+++IY+  G+W   A+  + MKE  V KE G SWI
Sbjct: 552 NLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWI 611

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + + ++HSF  DD+  P +D I+  L EL + +ID GY P+  F+ H
Sbjct: 612 KWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHH 658



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 152/324 (46%), Gaps = 48/324 (14%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           Q +L   + L+  YSK G + +  + FE   + DGV+  V++ G++ +G    A++ +  
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 349 MVKAGIEIDPNMVSAVL-GVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           M+K   +   N+    L  +  + +S G   LGKQIH  +IK  F S   V + L++MYS
Sbjct: 126 MMK---DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYS 182

Query: 405 KCGDLEDSIKVFSRMAPRN------------------------------SVSWNSMIAAF 434
           K G + D+ KVF  +  RN                              SVSW++MI   
Sbjct: 183 KVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGL 242

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A++G   +A+E + EMK+EG++     F S+L AC  +G +N G +    +   + +   
Sbjct: 243 AQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTN-LQDH 301

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKL 553
               + ++DM  +   L  A++  +RM  K +V+ W A+     + G  + G+   A K+
Sbjct: 302 IYVGSALIDMYCKCKCLHYAKTVFDRMKQK-NVVSWTAM-----VVGYGQTGRAGEAVKI 355

Query: 554 FLAQPDS---PAPYILMANIYSCS 574
           FL    S   P  Y L   I +C+
Sbjct: 356 FLDMQRSGIDPDHYTLGQAISACA 379


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 324/583 (55%), Gaps = 38/583 (6%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-----KRS 146
           WN +L+ Y++  ++ +A +LFD MP +D VSWN+++SG+ +NG  D     F     K S
Sbjct: 114 WNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS 173

Query: 147 LELGFYQLDQASFTIILSAC----DRSELSLVSKMIHCLVYLCGYEEEVTVG-------- 194
           +              I  AC     +S+  L+S   +CL  + G+  +  +G        
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS--WNCL--MGGFVRKKKLGDARWLFDK 229

Query: 195 ---------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
                    N +I+ Y + G  S  R++F E   R+V TWTA++SG VQN + +E    F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M       N ++Y + +      + +   R+    L++     ++   + ++  Y + 
Sbjct: 290 DEM----PEKNEVSYNAMIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQI 341

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G +  A + F+   + D VS   I+ G+AQ+G  EEA+ +FV++ + G  ++       L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L LGKQIH   +K  + +  FV N L+ MY KCG ++++   F  +  ++ V
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVV 461

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN+M+A +ARHG G +AL ++E MK  GV+P ++T + +L ACSH GL+++G E+  SM
Sbjct: 462 SWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSM 521

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           T+ + + P ++HY C++D++GRAG L EA+  I  MP +P    W ALLGA  IHG++E+
Sbjct: 522 TKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTEL 581

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           G+ AAE +F  +P +   Y+L++N+Y+ SGRW +  K   +M+++GV K  G SW+E++ 
Sbjct: 582 GEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++H+F V D  HP+ + I+  L EL   M +EGYV   + +LH
Sbjct: 642 KIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLH 684



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 20/389 (5%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            + WN+++S Y +   +  A +LFD+ P RD  +W  MVSG+++NG  D    FF    E
Sbjct: 235 AISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 149 LGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                 ++ S+  +++      ++ +  ++   +   C     ++  N +IT Y + G  
Sbjct: 295 -----KNEVSYNAMIAGYVQTKKMDIARELFESMP--C---RNISSWNTMITGYGQIGDI 344

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  RK F  M  R+ ++W A+I+G  Q+  YEE L +FV++     + N  T+  ++  C
Sbjct: 345 AQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + + AL  G+QIHG   K+   +   + +AL+ MY KCGS+++A   FE  EE D VS  
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +L G+A++GF  +A+ +F  M  AG++ D   +  VL        L  G +    + K 
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK- 523

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN---GF 441
           D+   P   +   +I++  + G LE++  +   M  +  + SW +++ A   HGN   G 
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACS 470
           KA E+    K+E         LS L+A S
Sbjct: 584 KAAEMV--FKMEPQNSGMYVLLSNLYAAS 610



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 219/484 (45%), Gaps = 60/484 (12%)

Query: 75  EPFDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           E   N N   V +  ++ WN  +S +++     +A+ +F+ MP R +VS+N M+SG+LRN
Sbjct: 34  ESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN 93

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVT 192
            +F++    F +  E   +     S+ ++L+   R+  L    ++   +      E++V 
Sbjct: 94  SKFNLARNLFDQMPERDLF-----SWNVMLTGYVRNCRLGDARRLFDLMP-----EKDVV 143

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLG 251
             N+L++ Y + G     R+VF  M  +N I+W  +++  V N   EE   LF  K    
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILW---KLALQSDLCIESALMDMYSKCGSV 308
           LI+ N L           +      +++    W   K+ ++ D    + ++  Y++ G +
Sbjct: 204 LISWNCL-----------MGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGL 251

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGV 367
             A ++F+ +   D  + T ++ G+ QNG  +EA   F +M +   E+  N M++  +  
Sbjct: 252 SQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN-EVSYNAMIAGYVQT 310

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVN----NGLINMYSKCGDLEDSIKVFSRMAPRN 423
             +D            I +  F S P  N    N +I  Y + GD+  + K F  M  R+
Sbjct: 311 KKMD------------IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRD 358

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            VSW ++IA +A+ G+  +AL ++ E+K +G      TF   L  C+ +  +  G     
Sbjct: 359 CVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG----- 413

Query: 484 SMTEVHRISPRAEH-YACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              ++H  + +  +   C V      M  + G + EA    E +  K DV+ W  +L   
Sbjct: 414 --KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGY 470

Query: 538 SIHG 541
           + HG
Sbjct: 471 ARHG 474


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 307/543 (56%), Gaps = 4/543 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FDD+P      WN ++ G+ RN  F      + + ++L     D  +F  +L AC 
Sbjct: 72  ARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSK-MQLARVSPDSFTFPHLLKACG 130

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITW 225
                 + + +H  V+  G+E +V V N LI  Y KC      R VF  + +  R +++W
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSW 190

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA++S   QN    E L++F +M    + P+ +  +S + A + LQ L +GR IH  + K
Sbjct: 191 TAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMK 250

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           + L+++  +  +L  MY+KCG V  A  +F+  +  + +    ++ G+A+NGF ++A+ L
Sbjct: 251 MGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDL 310

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M+   +  D   +++ +       SL   + +   + +SD+  + F+++ LI+M++K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAK 370

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +E +  VF R   R+ V W++MI  +  HG   +A+ LY  M+ +GV P DVTFL L
Sbjct: 371 CGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGL 430

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+H G+V +G  F   M + H+I+P+ +HYAC++D++GRAG L +A   I+ MPV+P
Sbjct: 431 LIACNHSGMVREGWWFFNRMAD-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
            V VW ALL AC  H   E+GKYAA++LF   P +   Y+ ++N+Y+ +  W   A+   
Sbjct: 490 GVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
           RMKE G++K+ G SW+E+  ++  F V DK HP+ + I   +  +   + + G+V NK  
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDA 609

Query: 646 ILH 648
            LH
Sbjct: 610 SLH 612



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 206/390 (52%), Gaps = 14/390 (3%)

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           ++I S+  +++L    + IH  + + G +    +   LI +    G  +  R+VF ++  
Sbjct: 26  SLIDSSTHKAQL----RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPR 81

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
             V  W A+I G  +N  +++ L ++ KM L  ++P+S T+   + AC GL  L  GR +
Sbjct: 82  PQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFV 141

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNG 337
           H  +++L  ++D+ +++ L+ +Y+KC  +  A  +FE     E   VS T I+  +AQNG
Sbjct: 142 HAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA+++F +M K  ++ D   + +VL  F     L  G+ IH+ ++K    + P +  
Sbjct: 202 EPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI 261

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L  MY+KCG +  +  +F +M   N + WN+MI+ +A++G    A++L+ EM  + V P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRP 321

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISPRAEHY--ACVVDMVGRAGLLIEA 514
             ++  S + AC+ VG     +E  + M E V R   R + +  + ++DM  + G +  A
Sbjct: 322 DTISITSAISACAQVG----SLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA 377

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           RS  +R  +  DV+VW A++    +HG + 
Sbjct: 378 RSVFDRT-LDRDVVVWSAMIVGYGLHGQAR 406



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 210/420 (50%), Gaps = 28/420 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           LL       H  +G  +HA   +  FE     +V+       + N L++ Y KC ++  A
Sbjct: 125 LLKACGGLSHLQMGRFVHAQVFRLGFEA----DVF-------VQNGLIALYAKCRRLGCA 173

Query: 109 VKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
             +F+ +P+  R  VSW  +VS + +NGE       F +  ++   + D  +   +L+A 
Sbjct: 174 RTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDV-KPDCVALVSVLNAF 232

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
              +     + IH  V   G E E  +  +L T Y KCG  ++ + +F +M+  N+I W 
Sbjct: 233 TCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+ISG  +N   ++ + LF +M    + P++++  S++ AC+ + +L + R +   + + 
Sbjct: 293 AMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS 352

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             + D+ I SAL+DM++KCGSVE A  +F+   + D V  + ++VG+  +G   EA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY 412

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNN--GLINMY 403
             M + G+   PN V+  LG+       G+ ++      + +D   NP   +   +I++ 
Sbjct: 413 RAMERDGVH--PNDVT-FLGLLIACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLL 469

Query: 404 SKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALEL--YEEMKLEGVEPTDV 460
            + G L+ + +V   M  +  V+ W ++++A  +H    + +EL  Y   +L  ++P++ 
Sbjct: 470 GRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH----RHVELGKYAAQQLFSIDPSNT 525


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 222/628 (35%), Positives = 337/628 (53%), Gaps = 97/628 (15%)

Query: 108 AVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFG---FFKRSLELGFYQLDQASFTII 162
           A ++F   P+  RDTV +N M++G+  N +   GFG    F+  L  GF + D  +FT +
Sbjct: 100 AREIFFATPLGIRDTVCYNAMITGYSHNND---GFGAIELFRDLLRNGF-RPDNFTFTSV 155

Query: 163 LSACDRSELSLV------SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS--------- 207
           L A     L+L+       + IHC V   G     +V NAL++ + KC SS         
Sbjct: 156 LGA-----LALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLM 210

Query: 208 SSGRKVFGEMR--------------VRN-----------------VITWTAVISGLVQNQ 236
           ++ RK+F EM               VRN                 V+ W A+ISG V + 
Sbjct: 211 AAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHG 270

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL----ALQSDL 292
            + E L++F KM+L  I  +  TY S + AC+       G+Q+H  + +     +L   L
Sbjct: 271 FFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL 330

Query: 293 CIESALMDMYSKCGSVEDAWQIFE----------------------------FAEEL--- 321
            + +AL  +Y KCG V++A Q+F                             F EE+   
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPER 390

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQI 380
           + ++ TV++ G AQNGF EE+++LF +M   G E  D     A++    +  +L  G+Q+
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWL-AALMHGRQL 449

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ +++  F S+    N LI MY+KCG +E +  +F  M   +SVSWN+MIAA  +HG+G
Sbjct: 450 HAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHG 509

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +ALEL+E M  E + P  +TFL++L  CSH GLV +G  + KSM+ ++ I P  +HYA 
Sbjct: 510 AQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYAR 569

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           ++D++ RAG   EA+  IE MPV+P   +W+ALL  C IHG+ ++G  AAE+LF   P  
Sbjct: 570 MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH 629

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              Y+L++N+Y+  GRW + AK  K M++ GV KE G SWIE+E +VH F+VDD +HP+ 
Sbjct: 630 DGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEV 689

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFILH 648
             ++  L EL   M   GY+P+ +F+LH
Sbjct: 690 QAVYNYLEELGLKMRKLGYIPDTKFVLH 717



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 204/447 (45%), Gaps = 90/447 (20%)

Query: 89  TVIWNSLLSFYLKC---------DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
           T + N+LLS ++KC           M  A KLFD+M  RD +SW TM++G++RNGE D  
Sbjct: 185 TSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAA 244

Query: 140 ------------------------FGFFKRSLE-------LGFYQLDQASFTIILSACDR 168
                                    GFF  +LE       LG  Q D+ ++T +LSAC  
Sbjct: 245 RQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGI-QWDEFTYTSVLSACAN 303

Query: 169 SELSLVSKMIHCLVYLC----GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV----- 219
           +   L  K +H  +         +  ++V NAL T Y+KCG     R+VF +M V     
Sbjct: 304 AGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS 363

Query: 220 --------------------------RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
                                     RN++TWT +ISGL QN   EE LKLF +M     
Sbjct: 364 WNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGF 423

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P    +  +++AC+ L AL  GRQ+H  L +L   S L   +AL+ MY+KCG VE A  
Sbjct: 424 EPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHC 483

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F     LD VS   ++    Q+G   +A++LF  M+K   +I P+ ++  L V    + 
Sbjct: 484 LFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKE--DILPDRIT-FLTVLSTCSH 540

Query: 374 LGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSW 427
            GL ++ H     +   +   P  ++   +I++  + G   ++  +   M   P   + W
Sbjct: 541 AGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPI-W 599

Query: 428 NSMIAAFARHGN---GFKALE-LYEEM 450
            +++A    HGN   G +A E L+E M
Sbjct: 600 EALLAGCRIHGNMDLGIQAAERLFELM 626



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 201/471 (42%), Gaps = 93/471 (19%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVF--GEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           + ++     LI ++   G+S+  R++F    + +R+ + + A+I+G   N      ++LF
Sbjct: 78  QPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELF 137

Query: 246 VKMHLGLINPNSLTYLSSVMACSGL---QALCEGRQIHGILWKLALQSDLCIESALMDMY 302
             +      P++ T+ S + A + +   +  C+  QIH  + K        + +AL+ ++
Sbjct: 138 RDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQ--QIHCAVVKSGSGFVTSVLNALLSVF 195

Query: 303 SKCG---------SVEDAWQIFEFAEELDGVSMTVILVGFAQN----------------- 336
            KC           +  A ++F+   E D +S T ++ G+ +N                 
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKL 255

Query: 337 --------------GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
                         GF  EA+++F KM   GI+ D    ++VL           GKQ+H+
Sbjct: 256 VVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHA 315

Query: 383 LIIKS------DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS------- 429
            I+++      DF+ +  VNN L  +Y KCG ++++ +VF++M  ++ VSWN+       
Sbjct: 316 YILRTEPRPSLDFSLS--VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVN 373

Query: 430 ------------------------MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
                                   MI+  A++G G ++L+L+  MK EG EP D  F   
Sbjct: 374 AGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGA 433

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           + AC+ +  +  G +    +  +   S  +   A ++ M  + G++  A      MP   
Sbjct: 434 IIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA-LITMYAKCGVVEAAHCLFLTMPYL- 491

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
           D + W A++ A   HG    G  A E  +L L +   P     +  + +CS
Sbjct: 492 DSVSWNAMIAALGQHGH---GAQALELFELMLKEDILPDRITFLTVLSTCS 539



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 120/262 (45%), Gaps = 38/262 (14%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + +LS  A  G F  G  +HA  ++T EP  + +      +  + N+L + Y KC ++  
Sbjct: 295 TSVLSACANAGFFLHGKQVHAYILRT-EPRPSLDF-----SLSVNNALATLYWKCGKVDE 348

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM--------------------------GFG 141
           A ++F+ MP++D VSWN ++SG++  G  D                           GFG
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 142 -----FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
                 F R    GF   D A F   + AC      +  + +H  +   G++  ++ GNA
Sbjct: 409 EESLKLFNRMKSEGFEPCDYA-FAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA 467

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           LIT Y KCG   +   +F  M   + ++W A+I+ L Q+    + L+LF  M    I P+
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527

Query: 257 SLTYLSSVMACSGLQALCEGRQ 278
            +T+L+ +  CS    + EG +
Sbjct: 528 RITFLTVLSTCSHAGLVEEGHR 549



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 155/356 (43%), Gaps = 60/356 (16%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQL 345
           Q D+   + L+  +S  G+   A +IF FA  L   D V    ++ G++ N     A++L
Sbjct: 78  QPDIVARTTLIAAHSSAGNSNLAREIF-FATPLGIRDTVCYNAMITGYSHNNDGFGAIEL 136

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFG-VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F  +++ G   D    ++VLG    +       +QIH  ++KS       V N L++++ 
Sbjct: 137 FRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 405 KCG---------DLEDSIKVFSRMAPRNSVSWNSMIAAFARHG----------------- 438
           KC           +  + K+F  M  R+ +SW +MIA + R+G                 
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLV 256

Query: 439 ------------NGF--KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
                       +GF  +ALE++ +M L G++  + T+ S+L AC++ G    G +    
Sbjct: 257 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQV--- 313

Query: 485 MTEVHRISPRAE-HYACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
              + R  PR    ++  V+     +  + G + EAR    +MPVK D++ W A+L    
Sbjct: 314 HAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK-DLVSWNAILSGYV 372

Query: 539 IHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
             G  +     A+  F   P+ +   + +M +  + +G  +E  K   RMK  G +
Sbjct: 373 NAGRID----EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFE 424



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 45/158 (28%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR-------------- 418
           S  + + +H+ +I S F    ++ N LI++Y K  DL  +  +F                
Sbjct: 30  SYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIA 89

Query: 419 -------------------MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
                              +  R++V +N+MI  ++ + +GF A+EL+ ++   G  P +
Sbjct: 90  AHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDN 149

Query: 460 VTFLSLLHACS------------HVGLVNKGMEFLKSM 485
            TF S+L A +            H  +V  G  F+ S+
Sbjct: 150 FTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSV 187


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 324/583 (55%), Gaps = 38/583 (6%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-----KRS 146
           WN +L+ Y++  ++ +A +LFD MP +D VSWN+++SG+ +NG  D     F     K S
Sbjct: 114 WNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNS 173

Query: 147 LELGFYQLDQASFTIILSAC----DRSELSLVSKMIHCLVYLCGYEEEVTVG-------- 194
           +              I  AC     +S+  L+S   +CL  + G+  +  +G        
Sbjct: 174 ISWNGLLAAYVHNGRIEEACLLFESKSDWDLIS--WNCL--MGGFVRKKKLGDARWLFDK 229

Query: 195 ---------NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
                    N +I+ Y + G  S  R++F E   R+V TWTA++SG VQN + +E    F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M       N ++Y + +      + +   R+    L++     ++   + ++  Y + 
Sbjct: 290 DEMP----EKNEVSYNAMIAGYVQTKKMDIARE----LFESMPCRNISSWNTMITGYGQI 341

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G +  A + F+   + D VS   I+ G+AQ+G  EEA+ +FV++ + G  ++       L
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L LGKQIH   +K  + +  FV N L+ MY KCG ++++   F  +  ++ V
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVV 461

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN+M+A +ARHG G +AL ++E MK  GV+P ++T + +L ACSH GL+++G E+  SM
Sbjct: 462 SWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSM 521

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           T+ + + P ++HY C++D++GRAG L EA+  I  MP +P    W ALLGA  IHG++E+
Sbjct: 522 TKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTEL 581

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           G+ AAE +F  +P +   Y+L++N+Y+ SGRW +  K   +M+++GV K  G SW+E++ 
Sbjct: 582 GEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQN 641

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++H+F V D  HP+ + I+  L EL   M +EGYV   + +LH
Sbjct: 642 KIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLH 684



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 20/389 (5%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            + WN+++S Y +   +  A +LFD+ P RD  +W  MVSG+++NG  D    FF    E
Sbjct: 235 AISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 149 LGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                 ++ S+  +++      ++ +  ++   +   C     ++  N +IT Y + G  
Sbjct: 295 -----KNEVSYNAMIAGYVQTKKMDIARELFESMP--C---RNISSWNTMITGYGQIGDI 344

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  RK F  M  R+ ++W A+I+G  Q+  YEE L +FV++     + N  T+  ++  C
Sbjct: 345 AQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + + AL  G+QIHG   K+   +   + +AL+ MY KCGS+++A   FE  EE D VS  
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +L G+A++GF  +A+ +F  M  AG++ D   +  VL        L  G +    + K 
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTK- 523

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN---GF 441
           D+   P   +   +I++  + G LE++  +   M  +  + SW +++ A   HGN   G 
Sbjct: 524 DYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGE 583

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACS 470
           KA E+    K+E         LS L+A S
Sbjct: 584 KAAEMV--FKMEPQNSGMYVLLSNLYAAS 610



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 219/484 (45%), Gaps = 60/484 (12%)

Query: 75  EPFDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           E   N N   V +  ++ WN  +S +++     +A+ +F+ MP R +VS+N M+SG+LRN
Sbjct: 34  ESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN 93

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVT 192
            +F++    F +  E   +     S+ ++L+   R+  L    ++   +      E++V 
Sbjct: 94  SKFNLARNLFDQMPERDLF-----SWNVMLTGYVRNCRLGDARRLFDLMP-----EKDVV 143

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-VKMHLG 251
             N+L++ Y + G     R+VF  M  +N I+W  +++  V N   EE   LF  K    
Sbjct: 144 SWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWD 203

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILW---KLALQSDLCIESALMDMYSKCGSV 308
           LI+ N L           +      +++    W   K+ ++ D    + ++  Y++ G +
Sbjct: 204 LISWNCL-----------MGGFVRKKKLGDARWLFDKMPVR-DAISWNTMISGYAQGGGL 251

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGV 367
             A ++F+ +   D  + T ++ G+ QNG  +EA   F +M +   E+  N M++  +  
Sbjct: 252 SQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKN-EVSYNAMIAGYVQT 310

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVN----NGLINMYSKCGDLEDSIKVFSRMAPRN 423
             +D            I +  F S P  N    N +I  Y + GD+  + K F  M  R+
Sbjct: 311 KKMD------------IARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRD 358

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            VSW ++IA +A+ G+  +AL ++ E+K +G      TF   L  C+ +  +  G     
Sbjct: 359 CVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELG----- 413

Query: 484 SMTEVHRISPRAEH-YACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              ++H  + +  +   C V      M  + G + EA    E +  K DV+ W  +L   
Sbjct: 414 --KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEK-DVVSWNTMLAGY 470

Query: 538 SIHG 541
           + HG
Sbjct: 471 ARHG 474



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 139/612 (22%), Positives = 232/612 (37%), Gaps = 148/612 (24%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           LS  A      LG  +H   +K                  + N+LL+ Y KC  +  A  
Sbjct: 401 LSTCADIAALELGKQIHGQAVKM----------GYGTGCFVGNALLAMYFKCGSIDEAND 450

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC---- 166
            F+ +  +D VSWNTM++G+ R+G        F+ S++    + D+ +   +LSAC    
Sbjct: 451 TFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE-SMKTAGVKPDEITMVGVLSACSHTG 509

Query: 167 --DRSELSL-----------VSKMIHCLVYLCGYEEEVTVGNALITSY-FKCGSSSSGRK 212
             DR                 SK   C++ L G    +     LI +  F+ G++S G  
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWG-A 568

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           + G  R+                +L E+  ++  KM     N      LS++ A SG   
Sbjct: 569 LLGASRIHG------------NTELGEKAAEMVFKMEPQ--NSGMYVLLSNLYAASGRWV 614

Query: 273 LCEG----------RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
             +           +++ G  W + +Q+ +   S        C   E   +I+ + EELD
Sbjct: 615 DADKMRSKMRDIGVQKVPGYSW-VEVQNKIHTFSV-----GDCSHPEKE-RIYAYLEELD 667

Query: 323 GVSMT----VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            + M     V L     +  EEE  +  +K     + +           FG+ T  G G+
Sbjct: 668 -LKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAV----------AFGILTIPG-GR 715

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            I                  ++     C D   +IK  S++  R  +  +S    F    
Sbjct: 716 PIR-----------------VMKNLRVCEDCHSAIKHISKIVGRLIILRDS--HRFHHFN 756

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            GF +               D      L    + GL++ G E+   M E + ++P ++HY
Sbjct: 757 EGFCSC-------------GDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHY 803

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            C++D++GR   L E                  ALLGA  IHG++E+G+ AA+  F   P
Sbjct: 804 TCMIDLLGRVDRLEEG-----------------ALLGASRIHGNTELGEKAAQMFFKMGP 846

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
            +                       I +M+++GV K  G SW E++ ++H+F V   +  
Sbjct: 847 QN---------------------SGISKMRDVGVQKVPGYSWFEVQNKIHTFSVGLFLSR 885

Query: 619 QADTIHGVLAEL 630
           + + I G L EL
Sbjct: 886 ERENI-GFLEEL 896


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 221/652 (33%), Positives = 354/652 (54%), Gaps = 54/652 (8%)

Query: 24  FITKIIQDPTSSTSKLVLDNYVD--ISR-LLSISAKEGHFHLGPSLHASFIKTFEPFDNQ 80
            +TK I  P  S + L     ++  +SR L ++     HF + P  H +F   F  F  +
Sbjct: 29  LVTKKINLPKGSHNDLCCQQEIERSVSRDLPNVQITAQHFLIFPE-HTAF--QFSGFSKR 85

Query: 81  N-----------VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
                         N PN T ++N                K  D     +  SWN++++ 
Sbjct: 86  RSICAGAVLRRRYSNNPNLTTLFN----------------KYVDKT---NVFSWNSVIAE 126

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYE 188
             R+G+       F    +L   + ++++F   + +C  + L L S +  H    + G+E
Sbjct: 127 LARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKSCS-ALLDLHSGRQAHQQALIFGFE 184

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
            ++ V +AL+  Y KCG     R +F E+  RN+++WT++I+G VQN      L LF + 
Sbjct: 185 PDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEF 244

Query: 249 HL--------GLINPNSLTYLSSVMACSGL--QALCEGRQIHGILWKLALQSDLCIESAL 298
            +        G +  + +  +S + ACS +  +++ EG  +HG L K   + DL +E+ L
Sbjct: 245 LVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG--VHGFLIKRGFEGDLGVENTL 302

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MD Y+KCG +  + ++F+   E D +S   I+  +AQNG   E+M++F +MVK G EI+ 
Sbjct: 303 MDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG-EINY 361

Query: 359 NMV--SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           N V  SAVL       S  LGK IH  +IK    SN FV   +I+MY KCG +E + K F
Sbjct: 362 NAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAF 421

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
            RM  +N  SW++M+A +  HG+  +ALE++ EM + GV+P  +TF+S+L ACSH GL+ 
Sbjct: 422 DRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 481

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G  + K+M+    + P  EHY C+VD++GRAG L EA   I+ M ++PD +VW ALLGA
Sbjct: 482 EGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 541

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C +H + ++G+ +A KLF   P +   Y+L++NIY+ +GRW++  +    MK  G+ K  
Sbjct: 542 CRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPP 601

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G S ++I+ +VH F+V D+ HPQ + I+  L +L   + + GYVP+   +LH
Sbjct: 602 GFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLH 653


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/554 (35%), Positives = 306/554 (55%), Gaps = 1/554 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y KC    +A+ +F  +   D V W+ +++   + G+ +     F   + LG    
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLP 413

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +Q +   +LSA   +      + IH  V+  G+E +V V NAL+T Y K G    G K++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  R++I+W A +SGL    +Y+  L +F  M      PN  T++S + +CS L  + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            GRQ+H  + K  L  +  + +AL+DMY+KC  +EDA   F      D  + TVI+  +A
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q    E+A+  F +M + G++ +   ++  L       SL  G+Q+HS++ KS   S+ F
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMF 653

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V + L++MY+KCG +E++  +F  +  R++++WN++I  +A++G G KAL  +  M  EG
Sbjct: 654 VGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG 713

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           + P  VTF  +L ACSH GLV +G E   SM     ISP  +H AC+VD++GR G   E 
Sbjct: 714 ISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDEL 773

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             FI++M +  + L+W+ +LGA  +H +  +G+ AA KLF  QP+  + YIL++NI++  
Sbjct: 774 EDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           GRW +  +    M   GV KE G SW+E   QVH+FV  D  HPQ   IH  L EL R +
Sbjct: 834 GRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDREL 893

Query: 635 IDEGYVPNKRFILH 648
               YVP   ++LH
Sbjct: 894 ASIQYVPKTEYVLH 907



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 244/486 (50%), Gaps = 8/486 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y KC ++  A K+F  MP ++ V+WN +++G+ + G+       F   +EL 
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ + T +L  C  S+     ++IH L+  CGYE    +G  L+  Y KCG +   
Sbjct: 310 V-KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDA 368

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  ++  +++ W+A+I+ L Q    EE +KLF  M LG   PN  T  S + A +  
Sbjct: 369 IGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNT 428

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ IH  +WK   ++D+ + +AL+ MY K G V D  +++E   + D +S    L
Sbjct: 429 GNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYL 488

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G    G  +  + +F  M++ G    PNM +  ++LG       +  G+Q+H+ IIK+ 
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEG--FIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ 546

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N FV   LI+MY+KC  LED+   F+R++ R+  +W  +I  +A+   G KAL  + 
Sbjct: 547 LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFR 606

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+ EGV+P + T    L  CS +  +  G +    + +   +S      A +VDM  + 
Sbjct: 607 QMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDMYAKC 665

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G + EA +  E + ++ D + W  ++   + +G        A ++ L +  SP       
Sbjct: 666 GCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKA-LTAFRMMLDEGISPDGVTFTG 723

Query: 569 NIYSCS 574
            + +CS
Sbjct: 724 ILSACS 729



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 192/376 (51%), Gaps = 2/376 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           ++ +L  C       V+K IH L+       +  +  +L+  Y KC  S+  R V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+V++WTA+I GLV      + + LF +M    I PN  T  + + ACS   AL  G+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H   +KL L  DL + SAL+D+Y+KCG +E A ++F    E + V+  V+L G+AQ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
               ++LF  M++  ++ +   ++ VL       +L  G+ IHSLIIK  +  N F+  G
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MYSKCG   D+I VF  +   + V W+++I    + G   ++++L+  M+L    P 
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             T  SLL A ++ G +  G      + +    +  A   A +V M  + G + +     
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA-LVTMYMKNGCVHDGTKLY 473

Query: 519 ERMPVKPDVLVWQALL 534
           E M V  D++ W A L
Sbjct: 474 ESM-VDRDLISWNAYL 488



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 223/490 (45%), Gaps = 16/490 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +W SL++ Y KC     A  +   MP RD VSW  ++ G +  G  +     F+     G
Sbjct: 149 LWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEG 208

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               ++ +    L AC       + K +H   +  G   ++ VG+AL+  Y KCG     
Sbjct: 209 IMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELA 267

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  +N +TW  +++G  Q       LKLF  M    +  N  T  + +  C+  
Sbjct: 268 SKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANS 327

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L +G+ IH ++ K   + +  I   L+DMYSKCG   DA  +F+  ++ D V  + ++
Sbjct: 328 KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
               Q G  EE+++LF  M       +   + ++L       +L  G+ IH+ + K  F 
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  V+N L+ MY K G + D  K++  M  R+ +SWN+ ++     G   + L ++  M
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHM 507

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE--HYAC--VVDMVG 506
             EG  P   TF+S+L +CS +  V+ G +        H I  + +  ++ C  ++DM  
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQ-----VHAHIIKNQLDDNNFVCTALIDMYA 562

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPY 564
           +   L +A     R+ V+ D+  W  ++   + +  +  G+ A       Q +   P  +
Sbjct: 563 KCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQEGVKPNEF 618

Query: 565 ILMANIYSCS 574
            L   +  CS
Sbjct: 619 TLAGCLSGCS 628



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 186/403 (46%), Gaps = 15/403 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
            L N   I  LLS +   G+   G S+HA   K          Y       + N+L++ Y
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWK----------YGFETDVAVSNALVTMY 460

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           +K   + +  KL++ M  RD +SWN  +SG    G +D     F   LE GF   +  +F
Sbjct: 461 MKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIP-NMYTF 519

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             IL +C         + +H  +     ++   V  ALI  Y KC         F  + V
Sbjct: 520 ISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSV 579

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R++ TWT +I+   Q    E+ L  F +M    + PN  T    +  CS L +L  G+Q+
Sbjct: 580 RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQL 639

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H +++K    SD+ + SAL+DMY+KCG +E+A  +FE     D ++   I+ G+AQNG  
Sbjct: 640 HSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQG 699

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
            +A+  F  M+  GI  D    + +L        +  GK+ H   +  DF  +P V++  
Sbjct: 700 NKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE-HFNSMYRDFGISPTVDHCA 758

Query: 398 GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
            ++++  + G  ++      +M   +N++ W +++ A   H N
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNN 801


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 188/552 (34%), Positives = 308/552 (55%), Gaps = 2/552 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N+  + ++L+  Y+K  ++    ++F  M  R+ VSW  +++G +  G ++M    +   
Sbjct: 190 NSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAG-YNMEALLYFSE 248

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + +     D  +F I L A   S L    K IH      G++E   V N L T Y KCG 
Sbjct: 249 MWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGK 308

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           +    ++F +M++ +V++WT +I+  VQ    E  ++ F +M    ++PN  T+ + + A
Sbjct: 309 ADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISA 368

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L     G QIHG + +L L   L + ++++ +YSK G ++ A  +F      D +S 
Sbjct: 369 CANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISW 428

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + I+  ++Q G+ +EA      M + G + +   +S+VL V G    L  GKQ+H+ ++ 
Sbjct: 429 STIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLC 488

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                   V++ LI+MYSKCG +E++ K+F+ M   N +SW +MI  +A HG   +A+ L
Sbjct: 489 IGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINL 548

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E++   G++P  VTF+ +L ACSH G+V+ G  +   MT  ++ISP  EHY C++D++ 
Sbjct: 549 FEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLC 608

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L EA   I  MP   D +VW  LL +C +HGD + G++ AE+L    P+S   +I 
Sbjct: 609 RAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIA 668

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +ANIY+  GRWKE A   K MK  GV KE G SW+ +  ++++FV  D+ HPQ++ I  V
Sbjct: 669 LANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVNDKLNAFVAGDQAHPQSEHITTV 728

Query: 627 LAELLRLMIDEG 638
           L ELL   I + 
Sbjct: 729 L-ELLSANIGDA 739



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 221/465 (47%), Gaps = 3/465 (0%)

Query: 80  QNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
           QN Y+V N   + NS L   +K  Q+  +  +FD M  RD +SW T+++G++   +    
Sbjct: 82  QNAYSVHNMLEL-NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEA 140

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
              F         Q DQ   ++ L AC         +++H      G    V V +ALI 
Sbjct: 141 LILFSNMWVQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALID 200

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y K G    G +VF +M  RNV++WTA+I+GLV      E L  F +M +  +  +S T
Sbjct: 201 MYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHT 260

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           +  ++ A +    L  G+ IH    K        + + L  MY+KCG  +   ++FE  +
Sbjct: 261 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMK 320

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D VS T ++  + Q G EE A++ F +M K+ +  +    +AV+           G+Q
Sbjct: 321 MPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQ 380

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH  +++        V N ++ +YSK G L+ +  VF  +  ++ +SW+++IA +++ G 
Sbjct: 381 IHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGY 440

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A +    M+ EG +P +    S+L  C  + L+ +G +    +  +  I   A  ++
Sbjct: 441 AKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCI-GIDHEAMVHS 499

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            ++ M  + G + EA      M +  +++ W A++   + HG S+
Sbjct: 500 ALISMYSKCGSVEEASKIFNGMKIN-NIISWTAMINGYAEHGYSQ 543



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 176/371 (47%), Gaps = 8/371 (2%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GL 252
           N+ +    K G     R +F +M  R+ I+WT +I+G V      E L LF  M +  GL
Sbjct: 94  NSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGL 153

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
                +  ++ + AC     +C G  +HG   K  L + + + SAL+DMY K G +E   
Sbjct: 154 QRDQFMISVA-LKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGC 212

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           ++F+   + + VS T I+ G    G+  EA+  F +M  + +  D +  +  L      +
Sbjct: 213 RVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSS 272

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  GK IH+  IK  F  + FV N L  MY+KCG  +  +++F +M   + VSW ++I 
Sbjct: 273 LLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLIT 332

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            + + G    A+E ++ M+   V P   TF +++ AC+++ +   G +    +  +  + 
Sbjct: 333 TYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVD 392

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
             +   + +V +  ++GLL  A S +     + D++ W  ++   S  G     K A + 
Sbjct: 393 ALSVANS-IVTLYSKSGLLKSA-SLVFHGITRKDIISWSTIIAVYSQGG---YAKEAFDY 447

Query: 553 LFLAQPDSPAP 563
           L   + + P P
Sbjct: 448 LSWMRREGPKP 458



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 11/127 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S +LS+         G  +HA  +             + +  ++ ++L+S Y KC
Sbjct: 459 NEFALSSVLSVCGSMALLEQGKQVHAHVL----------CIGIDHEAMVHSALISMYSKC 508

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A K+F+ M + + +SW  M++G+  +G        F++   +G  + D  +F  +
Sbjct: 509 GSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGL-KPDYVTFIGV 567

Query: 163 LSACDRS 169
           L+AC  +
Sbjct: 568 LTACSHA 574


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 323/596 (54%), Gaps = 14/596 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL + A       G ++HA                + + ++   +L + Y KC +  +A 
Sbjct: 22  LLKLCAARADLATGRAVHAQL----------EARGLASESIASTALANMYFKCRRPADAR 71

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF-GFFKRSLELGFYQLDQASFTIILSACDR 168
           ++FD MP RD V+WN +V+G+ RNG          +   E G  + D  +   +L AC  
Sbjct: 72  RVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACAD 131

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           +      + +H      G +E V V  A++ +Y KCG+  + R VF  M VRN ++W A+
Sbjct: 132 ARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAM 191

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G   N    E + LF +M    ++    + L+++ AC  L  L E R++H +L ++ L
Sbjct: 192 IDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGL 251

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            S++ + +AL+  Y+KC   + A Q+F E   +   +S   +++GF QN   E+A +LF 
Sbjct: 252 SSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311

Query: 348 KMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           +M    +  D   +VS +  V  +   L   + IH   I+     + +V   LI+MYSKC
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADISDPLQ-ARWIHGYSIRHQLDQDVYVLTALIDMYSKC 370

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  + ++F     R+ ++WN+MI  +  HG G  A+EL+EEMK  G  P + TFLS+L
Sbjct: 371 GRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVL 430

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G ++  SM + + + P  EHY  +VD++GRAG L EA SFI+ MP++P 
Sbjct: 431 AACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPG 490

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + V+ A+LGAC +H + E+ + +A+ +F   P+    ++L+ANIY+ +  WK+ A+    
Sbjct: 491 ISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTA 550

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           M++ G+ K  G S I+++ +VH+F      H  A  I+  LA+L+  + D GYVP+
Sbjct: 551 MEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPD 606



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 194/388 (50%), Gaps = 7/388 (1%)

Query: 158 SFTIILSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +FT +L  C  R++L+   + +H  +   G   E     AL   YFKC   +  R+VF  
Sbjct: 18  TFTALLKLCAARADLA-TGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDR 76

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--LGLINPNSLTYLSSVMACSGLQALC 274
           M  R+ + W AV++G  +N L    ++  V+M    G   P+S+T +S + AC+  +AL 
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             R++H    +  L   + + +A++D Y KCG+VE A  +F+     + VS   ++ G+A
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            NG   EAM LF +MV+ G+++    V A L   G    L   +++H L+++   +SN  
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVS 256

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLE 453
           V N LI  Y+KC   + + +VF+ +  + + +SWN+MI  F ++     A  L+  M+LE
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLE 316

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            V P   T +S++ A + +    +   ++   +  H++         ++DM  + G +  
Sbjct: 317 NVRPDSFTLVSVIPAVADISDPLQA-RWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSI 375

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHG 541
           AR   +    +  V+ W A++     HG
Sbjct: 376 ARRLFDSARDR-HVITWNAMIHGYGSHG 402



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 16/190 (8%)

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +A+L +      L  G+ +H+ +      S    +  L NMY KC    D+ +VF RM  
Sbjct: 20  TALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPS 79

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTDVTFLSLLHACSHVGLVNKGM 479
           R+ V+WN+++A +AR+G    A+E    M+ E  G  P  VT +S+L AC+         
Sbjct: 80  RDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA------- 132

Query: 480 EFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
             L +  EVH  + RA           V+D   + G +  AR+  + MPV+  V  W A+
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSV-SWNAM 191

Query: 534 LGACSIHGDS 543
           +   + +G++
Sbjct: 192 IDGYADNGNA 201


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1028

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 320/604 (52%), Gaps = 18/604 (2%)

Query: 41   LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            +D++   + LLS  A      +G   H+  IK            +     + N+L+  Y 
Sbjct: 426  IDDFT-FTSLLSTCAVSHDLEMGSQFHSIIIKK----------KLTKNLFVGNALVDMYA 474

Query: 101  KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
            KC  + +A ++F+ M  RD VSWNT++ G++++      F  F R    G    D A   
Sbjct: 475  KCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVS-DGACLA 533

Query: 161  IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
              L AC         K +HCL   CG +  +  G++LI  Y KCG     RKVF  M   
Sbjct: 534  STLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEW 593

Query: 221  NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
            +V++  A+I+G  QN L EE + LF +M    +NP+ +T+ + V AC   ++L  G Q H
Sbjct: 594  SVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFH 652

Query: 281  G--ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNG 337
            G  I W  + + +  +  +L+ +Y     + +A  +F E +     V  T ++ G +QNG
Sbjct: 653  GQIIKWGFSSEGEY-LGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNG 711

Query: 338  FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
            F EEA++ + +M   G   D      VL V  V +SL  G+ IHSLI       +   +N
Sbjct: 712  FYEEALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSN 771

Query: 398  GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             LI+MY+KCGD++ S +VF  M  R N VSWNS+I  +A++G    AL++++ M+   + 
Sbjct: 772  TLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIM 831

Query: 457  PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
            P ++TFL +L ACSH G V+ G +  + M   + I  R +H AC+VD++GR G L EA  
Sbjct: 832  PDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADD 891

Query: 517  FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            FIE   +KPD  +W +LLGAC IHGD   G+ AAE+L   +P + + Y+L++NIY+  GR
Sbjct: 892  FIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGR 951

Query: 577  WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
            W+E     K M++ GV K  G SWI++ ++ H F   D+ H     I   L +L  LM D
Sbjct: 952  WEEANALRKAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKIEMFLEDLYDLMKD 1011

Query: 637  EGYV 640
            +  V
Sbjct: 1012 DAVV 1015



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 145/498 (29%), Positives = 246/498 (49%), Gaps = 33/498 (6%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
            +  LG  +HA  IK        N+Y       + +SL+S Y KC++M  A K+F+ +  
Sbjct: 341 ANLDLGLVVHAEAIKLGLA---SNIY-------VGSSLVSMYSKCEKMEAAAKVFEALEE 390

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           R+ V WN M+ G+  NGE       F      G Y +D  +FT +LS C  S    +   
Sbjct: 391 RNDVLWNAMIRGYAHNGESHKVMELFMDMKSSG-YNIDDFTFTSLLSTCAVSHDLEMGSQ 449

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
            H ++      + + VGNAL+  Y KCG+    R++F  M  R+ ++W  +I G VQ++ 
Sbjct: 450 FHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYVQDEN 509

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E   LF++M+   I  +     S++ AC+ +  L +G+Q+H +  K  L   L   S+
Sbjct: 510 ESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSS 569

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMYSKCG +EDA ++F    E   VSM  ++ G++QN   EEA+ LF +M+  G+   
Sbjct: 570 LIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTKGVNPS 628

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVF 416
               + ++       SL LG Q H  IIK  F+S   ++   L+ +Y     + ++  +F
Sbjct: 629 EITFATIVEACHKPESLTLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALF 688

Query: 417 SRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           S + +P++ V W  M++  +++G   +AL+ Y+EM+ +G  P   TF+++L  CS     
Sbjct: 689 SELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCS----- 743

Query: 476 NKGMEFLKSMTEVHRISPRAEHYA---------CVVDMVGRAGLLIEARSFIERMPVKPD 526
                 L S+ E   I     H A          ++DM  + G +  +    + M  + +
Sbjct: 744 -----VLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSN 798

Query: 527 VLVWQALLGACSIHGDSE 544
           V+ W +L+   + +G +E
Sbjct: 799 VVSWNSLINGYAKNGYAE 816



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 247/530 (46%), Gaps = 66/530 (12%)

Query: 11  NSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASF 70
           NS     SS+  P   K+++   S    L+  N    S +LS SA+E +   G  +H S 
Sbjct: 129 NSMLSMYSSIGQP--GKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSM 186

Query: 71  IKTF-------------------EPFDNQNVYN--VPNATVIWNSLLSFYLKCD------ 103
           IK                        D Q V++  V   TV W  L S Y+K        
Sbjct: 187 IKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAV 246

Query: 104 -----------------------------QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
                                        ++++A  LF +MP  D V+WN M+SG  + G
Sbjct: 247 IVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRG 306

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACD---RSELSLVSKMIHCLVYLCGYEEEV 191
              +   +F  ++     +  +++   +LSA       +L LV   +H      G    +
Sbjct: 307 CEIVAIEYF-LNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV---VHAEAIKLGLASNI 362

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            VG++L++ Y KC    +  KVF  +  RN + W A+I G   N    + ++LF+ M   
Sbjct: 363 YVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSS 422

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
             N +  T+ S +  C+    L  G Q H I+ K  L  +L + +AL+DMY+KCG++EDA
Sbjct: 423 GYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDA 482

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            QIFE   + D VS   I+ G+ Q+  E EA  LF++M   GI  D   +++ L      
Sbjct: 483 RQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNV 542

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             L  GKQ+H L +K          + LI+MYSKCG +ED+ KVFS M   + VS N++I
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALI 602

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           A ++++ N  +A+ L++EM  +GV P+++TF +++ AC     +  G +F
Sbjct: 603 AGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQF 651



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 207/447 (46%), Gaps = 45/447 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++  Y KC Q+  A K F+ +  +D  +WN+M+S +   G+     G   RS    F 
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQP----GKVLRSFVSLFE 153

Query: 153 QL---DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            L   ++ +F+I+LS   R       + IHC +   G E     G AL+  Y KC     
Sbjct: 154 NLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGD 213

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            ++VF  +   N + WT + SG V+  L EE + +F +M      P+ L +++       
Sbjct: 214 AQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFVT------- 266

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                                       +++ Y   G ++DA  +F      D V+  V+
Sbjct: 267 ----------------------------VINTYISLGKLKDARLLFGEMPSPDVVAWNVM 298

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G  + G E  A++ F+ M K+ ++   + + +VL   G+  +L LG  +H+  IK   
Sbjct: 299 ISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGL 358

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN +V + L++MYSKC  +E + KVF  +  RN V WN+MI  +A +G   K +EL+ +
Sbjct: 359 ASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMD 418

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  G    D TF SLL  C+    +  G +F  S+    +++        +VDM  + G
Sbjct: 419 MKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQF-HSIIIKKKLTKNLFVGNALVDMYAKCG 477

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGA 536
            L +AR   E M  + +V  W  ++G 
Sbjct: 478 ALEDARQIFEHMCDRDNV-SWNTIIGG 503



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 172/413 (41%), Gaps = 83/413 (20%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           + K +H    + G + E  +GNA++  Y KC   S   K F  +  ++V  W +++S  +
Sbjct: 78  IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLS--M 134

Query: 234 QNQLYEEG--LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQS 290
            + + + G  L+ FV +   LI PN  T+ S V++ S  +   E GRQIH  + K+ L+ 
Sbjct: 135 YSSIGQPGKVLRSFVSLFENLIFPNKFTF-SIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +     AL+DMY+KC  + DA ++F+   + + V  T +  G+ + G  EEA+ +F +M 
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             G    P+ ++ V                                  +IN Y   G L+
Sbjct: 254 GEGHR--PDHLAFVT---------------------------------VINTYISLGKLK 278

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           D+  +F  M   + V+WN MI+   + G    A+E +  M+   V+ T  T  S+L A  
Sbjct: 279 DARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIG 338

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
            V  ++ G   L    E  ++   +  Y  + +V M  +   +  A    E +  + DVL
Sbjct: 339 IVANLDLG---LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVL 395

Query: 529 VWQA-----------------------------------LLGACSIHGDSEMG 546
            W A                                   LL  C++  D EMG
Sbjct: 396 -WNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMG 447



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 148/322 (45%), Gaps = 10/322 (3%)

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL  G+ +H     L + S+  + +A++D+Y+KC  V  A + F   E+ D  +   +L 
Sbjct: 75  ALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSLEK-DVTAWNSMLS 133

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            ++  G   + ++ FV + +  I  +    S VL     +T++  G+QIH  +IK     
Sbjct: 134 MYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLER 193

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N +    L++MY+KC  L D+ +VF  +   N+V W  + + + + G   +A+ ++E M+
Sbjct: 194 NSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMR 253

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
            EG  P  + F+++++    +G +         M      SP    +  ++   G+ G  
Sbjct: 254 GEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMP-----SPDVVAWNVMISGHGKRGCE 308

Query: 512 IEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLFLAQPDSPAPYILM 567
           I A  +   + +  VK       ++L A  I  + ++G    AE + L    +      +
Sbjct: 309 IVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 568 ANIYSCSGRWKERAKAIKRMKE 589
            ++YS   + +  AK  + ++E
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEE 390


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 194/563 (34%), Positives = 319/563 (56%), Gaps = 15/563 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + ++L+    +   + +A K+FD +  +  V W  ++S +++    +     F   LE 
Sbjct: 189 AVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLED 248

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF + D+ + + ++SAC       +   +H L    G   +  V   L+  Y K     +
Sbjct: 249 GF-EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQA 307

Query: 210 ---GRKVFGEMRVRNVITWTAVISGLVQNQLYEEG-LKLFVKMHLGLINPNSLTYLSSVM 265
                KVF  M   +VI+WTA+ISG VQ+ + E   + LF +M    I PN +TY S + 
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ +     GRQ+H  + K    S   + +AL+ MY++ G +E+A ++F    +L   S
Sbjct: 368 SCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFN---QLYERS 424

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           M   +        E     L  ++V+  + I  +  ++++        L  G+Q+H++ +
Sbjct: 425 MIPCIT-------EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSL 477

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+ F S+ FV+N L++MYS+CG LED+ + F+ +  RN +SW SMI+  A+HG   +AL 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+ +M L GV+P DVT++++L ACSHVGLV +G E+ +SM   H + PR EHYAC+VD++
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            R+G++ EA  FI  MP+K D LVW+ LLGAC  H + E+G+  A+ +   +P  PAPY+
Sbjct: 598 ARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYV 657

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+ +G W E A+    M++  ++KETG+SW+E+E   H F   D  HP+A  I+G
Sbjct: 658 LLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYG 717

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L  L+R +   GYVP+   +LH
Sbjct: 718 KLDTLVRQIKGMGYVPDTSIVLH 740



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 153/513 (29%), Positives = 253/513 (49%), Gaps = 43/513 (8%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D+S LL+ +A+ G   LG +LH   ++  +  D           V+ NSLL+ Y +C  +
Sbjct: 50  DVSALLAAAARAGDLRLGRALHRRLLRG-DLLDRD--------AVVANSLLTLYSRCGAV 100

Query: 106 RNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
            +A  +FD M  +RD VSW  M S   RNG            LE G    +  +      
Sbjct: 101 ASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLP-NAYTLCAAAH 159

Query: 165 ACDRSEL-SLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           AC   EL  LV  ++  LV+  G +  +V VG+ALI    + G  +S RKVF  +  + V
Sbjct: 160 ACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTV 219

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           + WT +IS  VQ +  EE ++LF+        P+  T  S + AC+ L ++  G Q+H +
Sbjct: 220 VVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSL 279

Query: 283 LWKLALQSDLCIESALMDMYSKCG---SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
             ++ L SD C+   L+DMY+K     +++ A ++FE   + D +S T ++ G+ Q+G +
Sbjct: 280 ALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQ 339

Query: 340 E-EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           E + M LF +M+   I+ +    S++L      +    G+Q+H+ +IKS+  S   V N 
Sbjct: 340 ENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNA 399

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY++ G +E++ +VF+++  R      SMI      G  F    L   +    V  +
Sbjct: 400 LVSMYAESGCMEEARRVFNQLYER------SMIPCIT-EGRDFP---LDHRIVRMDVGIS 449

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLI 512
             TF SL+ A + VG++ KG +        H +S +A   +       +V M  R G L 
Sbjct: 450 SSTFASLISAAASVGMLTKGQQL-------HAMSLKAGFGSDRFVSNSLVSMYSRCGYLE 502

Query: 513 EA-RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +A RSF E      +V+ W +++   + HG +E
Sbjct: 503 DACRSFNELK--DRNVISWTSMISGLAKHGYAE 533



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           P+ VSA+L        L LG+ +H  +++ D    +  V N L+ +YS+CG +  +  VF
Sbjct: 48  PSDVSALLAAAARAGDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVF 107

Query: 417 SRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGL 474
             M   R+ VSW +M +  AR+G    +L L  EM   G+ P   T  +  HAC  H   
Sbjct: 108 DGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELY 167

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
              G   L  + ++          + ++DM+ R G L  AR   + + ++  V+VW  L+
Sbjct: 168 CLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGL-IEKTVVVWTLLI 226

Query: 535 GACSIHGDSEMGKYAAEKL--FLAQPDSPAPYILMANIYSCS 574
              S +   E  + A E    FL     P  Y + + I +C+
Sbjct: 227 ---SRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACT 265


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 316/589 (53%), Gaps = 58/589 (9%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG  LH   +KT          +     VI  + L  Y+KC+ + +A KLF+ +P  +
Sbjct: 291 LRLGSQLHGHALKT----------DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN 340

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
             S+N ++ G+ R+   D G G            LD+ S +    AC   +  L    +H
Sbjct: 341 LQSYNAIIVGYARS---DKGLG------------LDEVSLSGAFRACAVIKGDLEGLQVH 385

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            L      +  + V NA++  Y KCG+      VF EM  R+ ++W A+I+   QN   E
Sbjct: 386 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 445

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + L LF                                 IH  + K  L  D  +  AL+
Sbjct: 446 KTLSLF---------------------------------IHNRIIKSRLGLDSFVGIALI 472

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMYSKCG +E A ++ +   E   VS   I+ GF+     EEA + F KM++ G++ D  
Sbjct: 473 DMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF 532

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             + +L       ++ LGKQIH+ IIK +  S+ ++++ L++MYSKCG+++D   +F + 
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 592

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+WN+M+  +A+HG G +AL+++E M+LE V+P   TFL++L AC H+GLV KG+
Sbjct: 593 PNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 652

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +  SM   + + P+ EHY+CVVD++GR+G + +A   IE MP + D ++W+ LL  C I
Sbjct: 653 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKI 712

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+ E+ + AA  +   +P+  A Y+L++NIY+ +G W E  K  K M+  G+ KE G S
Sbjct: 713 HGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCS 772

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI+ +VH+F+V DK HP++  I+  L  L   M   GY+P+  FIL+
Sbjct: 773 WIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILN 821



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/510 (28%), Positives = 245/510 (48%), Gaps = 57/510 (11%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN++L  Y     +  A KLFD MP RD VSWN+++SG+L NG+       F +   
Sbjct: 108 TVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGR 167

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G    D+ +F ++L +C   E       IH L    G++ +V  G+AL+  Y KC    
Sbjct: 168 MGTV-FDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              + F  M  +N ++W+A+I+G VQN     GL+LF +M    +  +  T+ S   +C+
Sbjct: 227 CSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL AL  G Q+HG   K    +D+ I +A +DMY KC ++ DA ++F      +  S   
Sbjct: 287 GLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNA 346

Query: 329 ILVGFAQN----GFEE-----------------EAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           I+VG+A++    G +E                 E +Q+    +K+  + +  + +A+L +
Sbjct: 347 IIVGYARSDKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDM 406

Query: 368 FGVDTSL---------------------------------GLGKQIHSLIIKSDFTSNPF 394
           +G   +L                                  L   IH+ IIKS    + F
Sbjct: 407 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSF 466

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V   LI+MYSKCG +E + K+  R+A +  VSWN++I+ F+      +A + + +M   G
Sbjct: 467 VGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 526

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           V+P + T+ ++L  C+++  V  G +    + +   +   A   + +VDM  + G + + 
Sbjct: 527 VDPDNFTYATILDTCANLVTVELGKQIHAQIIK-KELQSDAYISSTLVDMYSKCGNMQDF 585

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +   E+ P + D + W A++   + HG  E
Sbjct: 586 QLIFEKAPNR-DFVTWNAMVCGYAQHGLGE 614



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 61/427 (14%)

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC----------- 204
           + +F+ I   C   +     K  H  + L  ++  V V N LI  Y KC           
Sbjct: 42  KKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFD 101

Query: 205 --------------------GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
                               G     +K+F  M  R+V++W ++ISG + N  + + + +
Sbjct: 102 GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDV 161

Query: 245 FVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           F++M  +G +   + T+   + +CS L+    G QIHG+  K+    D+   SAL+DMY+
Sbjct: 162 FLQMGRMGTVFDRT-TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYA 220

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KC  ++ + Q F    E + VS + I+ G  QN      ++LF +M KAG+ +  +  ++
Sbjct: 221 KCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFAS 280

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           V       ++L LG Q+H   +K+DF ++  +    ++MY KC +L D+ K+F+ +   N
Sbjct: 281 VFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHN 340

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
             S+N++I  +AR   G       +E+ L G             AC+   ++   +E L 
Sbjct: 341 LQSYNAIIVGYARSDKGLG----LDEVSLSGA----------FRACA---VIKGDLEGL- 382

Query: 484 SMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              +VH +S ++  +   CV    +DM G+ G L+EA    E M V  D + W A++ A 
Sbjct: 383 ---QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAAH 438

Query: 538 SIHGDSE 544
             +G+ E
Sbjct: 439 EQNGNEE 445



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 23/149 (15%)

Query: 31  DPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           DP + T   +LD   ++  +           LG  +HA  IK            + +   
Sbjct: 528 DPDNFTYATILDTCANLVTV----------ELGKQIHAQIIKK----------ELQSDAY 567

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L+  Y KC  M++   +F+  P RD V+WN MV G+ ++G  +     F+  ++L 
Sbjct: 568 ISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEY-MQLE 626

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIH 179
             + + A+F  +L AC    + LV K +H
Sbjct: 627 NVKPNHATFLAVLRAC--GHMGLVEKGLH 653


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/554 (35%), Positives = 306/554 (55%), Gaps = 1/554 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y KC    +A+ +F  +   D V W+ +++   + G+ +     F   + LG    
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF-HLMRLGDTLP 413

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +Q +   +LSA   +      + IH  V+  G+E +V V NAL+T Y K G    G K++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  R++I+W A +SGL    +Y+  L +F  M      PN  T++S + +CS L  + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            GRQ+H  + K  L  +  + +AL+DMY+KC  +EDA   F      D  + TVI+  +A
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q    E+A+  F +M + G++ +   ++  L       SL  G+Q+HS++ KS   S+ F
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMF 653

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V + L++MY+KCG +E++  +F  +  R++++WN++I  +A++G G KAL  +  M  EG
Sbjct: 654 VGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG 713

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           + P  VTF  +L ACSH GLV +G E   SM     ISP  +H AC+VD++GR G   E 
Sbjct: 714 ISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDEL 773

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             FI++M +  + L+W+ +LGA  +H +  +G+ AA KLF  QP+  + YIL++NI++  
Sbjct: 774 EDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           GRW +  +    M   GV KE G SW+E   QVH+FV  D  HPQ   IH  L EL R +
Sbjct: 834 GRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDREL 893

Query: 635 IDEGYVPNKRFILH 648
               YVP   ++LH
Sbjct: 894 ASIQYVPKTEYVLH 907



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/486 (28%), Positives = 244/486 (50%), Gaps = 8/486 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y KC ++  A K+F  MP ++ V+WN +++G+ + G+       F   +EL 
Sbjct: 250 VGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELD 309

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ + T +L  C  S+     ++IH L+  CGYE    +G  L+  Y KCG +   
Sbjct: 310 V-KCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDA 368

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  ++  +++ W+A+I+ L Q    EE +KLF  M LG   PN  T  S + A +  
Sbjct: 369 IGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNT 428

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+ IH  +WK   ++D+ + +AL+ MY K G V D  +++E   + D +S    L
Sbjct: 429 GNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYL 488

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G    G  +  + +F  M++ G    PNM +  ++LG       +  G+Q+H+ IIK+ 
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEG--FIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ 546

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N FV   LI+MY+KC  LED+   F+R++ R+  +W  +I  +A+   G KAL  + 
Sbjct: 547 LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFR 606

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+ EGV+P + T    L  CS +  +  G +    + +   +S      A +VDM  + 
Sbjct: 607 QMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDMYAKC 665

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G + EA +  E + ++ D + W  ++   + +G        A ++ L +  SP       
Sbjct: 666 GCMEEAEALFEAL-IRRDTIAWNTIICGYAQNGQGNKA-LTAFRMMLDEGISPDGVTFTG 723

Query: 569 NIYSCS 574
            + +CS
Sbjct: 724 ILSACS 729



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/376 (31%), Positives = 192/376 (51%), Gaps = 2/376 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           ++ +L  C       V+K IH L+       +  +  +L+  Y KC  S+  R V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+V++WTA+I GLV      + + LF +M    I PN  T  + + ACS   AL  G+Q
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H   +KL L  DL + SAL+D+Y+KCG +E A ++F    E + V+  V+L G+AQ G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
               ++LF  M++  ++ +   ++ VL       +L  G+ IHSLIIK  +  N F+  G
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MYSKCG   D+I VF  +   + V W+++I    + G   ++++L+  M+L    P 
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             T  SLL A ++ G +  G      + +    +  A   A +V M  + G + +     
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNA-LVTMYMKNGCVHDGTKLY 473

Query: 519 ERMPVKPDVLVWQALL 534
           E M V  D++ W A L
Sbjct: 474 ESM-VDRDLISWNAYL 488



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 223/490 (45%), Gaps = 16/490 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +W SL++ Y KC     A  +   MP RD VSW  ++ G +  G  +     F+     G
Sbjct: 149 LWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEG 208

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               ++ +    L AC       + K +H   +  G   ++ VG+AL+  Y KCG     
Sbjct: 209 IMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELA 267

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  +N +TW  +++G  Q       LKLF  M    +  N  T  + +  C+  
Sbjct: 268 SKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANS 327

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L +G+ IH ++ K   + +  I   L+DMYSKCG   DA  +F+  ++ D V  + ++
Sbjct: 328 KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
               Q G  EE+++LF  M       +   + ++L       +L  G+ IH+ + K  F 
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  V+N L+ MY K G + D  K++  M  R+ +SWN+ ++     G   + L ++  M
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHM 507

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE--HYAC--VVDMVG 506
             EG  P   TF+S+L +CS +  V+ G +        H I  + +  ++ C  ++DM  
Sbjct: 508 LEEGFIPNMYTFISILGSCSCLFDVHYGRQ-----VHAHIIKNQLDDNNFVCTALIDMYA 562

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPY 564
           +   L +A     R+ V+ D+  W  ++   + +  +  G+ A       Q +   P  +
Sbjct: 563 KCMYLEDADVAFNRLSVR-DLFTWTVII---TNYAQTNQGEKALNYFRQMQQEGVKPNEF 618

Query: 565 ILMANIYSCS 574
            L   +  CS
Sbjct: 619 TLAGCLSGCS 628



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 186/403 (46%), Gaps = 15/403 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
            L N   I  LLS +   G+   G S+HA   K          Y       + N+L++ Y
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQYGQSIHACVWK----------YGFETDVAVSNALVTMY 460

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           +K   + +  KL++ M  RD +SWN  +SG    G +D     F   LE GF   +  +F
Sbjct: 461 MKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIP-NMYTF 519

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             IL +C         + +H  +     ++   V  ALI  Y KC         F  + V
Sbjct: 520 ISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSV 579

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R++ TWT +I+   Q    E+ L  F +M    + PN  T    +  CS L +L  G+Q+
Sbjct: 580 RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQL 639

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H +++K    SD+ + SAL+DMY+KCG +E+A  +FE     D ++   I+ G+AQNG  
Sbjct: 640 HSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQG 699

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
            +A+  F  M+  GI  D    + +L        +  GK+ H   +  DF  +P V++  
Sbjct: 700 NKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE-HFNSMYRDFGISPTVDHCA 758

Query: 398 GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
            ++++  + G  ++      +M   +N++ W +++ A   H N
Sbjct: 759 CMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNN 801


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 201/560 (35%), Positives = 308/560 (55%), Gaps = 5/560 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +++++ Y K  ++  A K+FD M  RDTV WNTMVSG ++N  FD     F   ++ G
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +   +L      +   +   I CL    G+     V   L   Y KCG   + 
Sbjct: 203 I-GFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETA 261

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACS 268
           R +FG++   +++++ A+ISG   N   E  ++LF ++ +    +N +S+  L  V    
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPF 321

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   L   R IHG   K  + S+  + +AL  +YS+   +E A  +F+ + E    S   
Sbjct: 322 GHLHLT--RCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+AQNG  E+A+ LF +M K  +  +P  V+++L       +L LGK +H LI +  
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F SN FV+  LI+MY+KCG + ++ ++FS M  +N+V+WN+MI+ +  HG G +AL L+ 
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM    V PT VTFLS+L+ACSH GLV +G E  +SM   H   P  EHYAC+VD++GRA
Sbjct: 500 EMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FI +MPV+P   VW ALLGAC IH D+ + + A++KLF   P +   Y+L++
Sbjct: 560 GNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLS 619

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS    + E A     +K   + K  G + IE+   +H F   D+ HPQA  I+ +L 
Sbjct: 620 NIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLE 679

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M + G+       LH
Sbjct: 680 KLTGKMREAGFQTETGTALH 699



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 223/469 (47%), Gaps = 16/469 (3%)

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LF  +P  D   +N ++  F  N         +    +    + D  ++  ++S      
Sbjct: 64  LFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLG 123

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           L L+      +    G+  ++ VG+A++  YFK    ++ RKVF  M  R+ + W  ++S
Sbjct: 124 LGLLLHAHSIVA---GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVS 180

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GLV+N  ++E + +F  M  G I  +S T  + +   + LQ L  G  I  +  K+   S
Sbjct: 181 GLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHS 240

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
              + + L  +YSKCG +E A  +F    + D VS   ++ G+  N   E +++LF +++
Sbjct: 241 HAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELL 300

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
            +G +++ + +  ++ VF     L L + IH    KS   SN  V+  L  +YS+  ++E
Sbjct: 301 VSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIE 360

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  +F   + ++  SWN+MI+ +A++G   KA+ L++EM+   V P  VT  S+L AC+
Sbjct: 361 SARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACA 420

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            +G ++ G +++  +               ++DM  + G + EA+     MP K + + W
Sbjct: 421 QLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTW 478

Query: 531 QALLGACSIHGDSEMGKYAAEKL-----FLAQPDSPAPYILMANIYSCS 574
            A++    +HG      Y  E L      L    SP     ++ +Y+CS
Sbjct: 479 NAMISGYGLHG------YGHEALNLFNEMLHSRVSPTGVTFLSVLYACS 521



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 118/269 (43%), Gaps = 8/269 (2%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q H  +    L +DL   + L    S   +++ A  +F      D     V++  F+ N 
Sbjct: 28  QTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNN 87

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
               A+ L+  + K+   ++P+  +    V    +SLGLG  +H+  I + F S+ FV +
Sbjct: 88  SPSSAVSLYTHLRKS-TPLEPDNFTYAF-VISGASSLGLGLLLHAHSIVAGFGSDLFVGS 145

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            ++  Y K   +  + KVF  M  R++V WN+M++   ++    +A+ ++ +M   G+  
Sbjct: 146 AIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF 205

Query: 458 TDVTFLSLLHACSHVG--LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
              T  ++L   + +    +  G++ L      H  +      AC+    G     IE  
Sbjct: 206 DSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGE----IETA 261

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSE 544
             +     +PD++ + A++   + + ++E
Sbjct: 262 RLLFGQIGQPDLVSYNAMISGYTCNNETE 290


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 333/588 (56%), Gaps = 23/588 (3%)

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           + H +F +T EP    NV++       +N+L++ Y K   +  A  LFD +P  D VS+N
Sbjct: 61  TAHHAFNQTHEP----NVFS-------FNALIAAYAKESLIHVAHHLFDQIPQPDLVSFN 109

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           T+++ +   G+       F    E+G   +D  +F+ +++AC  + + L+ + +H L + 
Sbjct: 110 TLINAYADRGDTLSALSLFGEMREMGLV-MDGFTFSGVITACC-NHVGLI-RQLHSLAFS 166

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGL 242
            G++  V+V N+L+T Y K G       VF  M   VR+ ++W ++I    Q++   + L
Sbjct: 167 SGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKAL 226

Query: 243 KLFVKM-HLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L+  M H G  I+  +L  + +  +C  ++ L  G Q H    K     +  + S L+D
Sbjct: 227 ALYRDMVHRGFEIDMFTLASVLTTFSC--VEDLSGGLQFHAKAIKTGFNKNRHVGSGLID 284

Query: 301 MYSKCGS-VEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDP 358
           MY+KCG+ + ++ ++FE     D V    ++ G++QN     EA++ F +M +AG   D 
Sbjct: 285 MYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDD 344

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFS 417
                 +      +S   GKQ H+L +KS+  SN   VNN L+ MYSKCG+L+D+ K+F 
Sbjct: 345 CSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQ 404

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           RM   N+V+ NS+IA +A+HG G ++L L+E+M    + PT +T +S+L AC+H G V +
Sbjct: 405 RMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEE 464

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G ++   M ++  I P AEHY+C++D++GRAG L EA   I+ MP  P    W ALLGAC
Sbjct: 465 GKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGAC 524

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
             +G+ E+ + AA +    +P +  PYI++A++YS + +W+E A+  K M++ G+ K+ G
Sbjct: 525 RKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPG 584

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
            SWIE+ K+VH FV +D  HP+   IH  L E+   M   GYVP+ R+
Sbjct: 585 CSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRW 632



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 135/308 (43%), Gaps = 40/308 (12%)

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE--------- 316
           +C   + L  G+ +H I  K  + S   + +  + +YSKC  +  A   F          
Sbjct: 17  SCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNVFS 76

Query: 317 -------FAEEL---------------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
                  +A+E                D VS   ++  +A  G    A+ LF +M + G+
Sbjct: 77  FNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMGL 136

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            +D    S V  +      +GL +Q+HSL   S F S   V N L+  YSK G LE++  
Sbjct: 137 VMDGFTFSGV--ITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEM 194

Query: 415 VFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           VF+ M    R+ VSWNSMI A+ +H  G KAL LY +M   G E    T  S+L   S V
Sbjct: 195 VFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCV 254

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGL-LIEARSFIERMPVKPDVLVW 530
             ++ G++F     +      R  H    ++DM  + G  + E+R   E +    D++VW
Sbjct: 255 EDLSGGLQFHAKAIKTGFNKNR--HVGSGLIDMYAKCGAGMSESRKVFEEI-CGSDLVVW 311

Query: 531 QALLGACS 538
             ++   S
Sbjct: 312 NTMISGYS 319


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 330/609 (54%), Gaps = 17/609 (2%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ +      ++   +  G   LG  LHA  +K+                +  N+L+S Y
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKS----------EFGAHIIAQNALISMY 209

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K + + +A+ +F  M  RD +SW +M++GF + G       +FK  L  G Y  ++  F
Sbjct: 210 TKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIF 269

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             + SAC         + +H +    G   +V  G +L   Y KCG  S  R VF ++  
Sbjct: 270 GSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++ W A+I+G       +E +  F +M H GLI P+ +T  S + AC+    L +G Q
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLI-PDEITVRSLLCACTSPSELYQGMQ 388

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE---ELDGVSMTVILVGFAQ 335
           +HG + K+ L  D+ + + L+ MY+KC  + DA  IF F E     D VS   IL    +
Sbjct: 389 VHGYINKMGLDLDVPVCNTLLTMYAKCSELRDA--IFFFEEMRCNADLVSWNAILTACMR 446

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +   EE  +L   M  +    D   ++ VLG      S+ +G Q+H   +K+    +  V
Sbjct: 447 HDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSV 506

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            NGLI++Y+KCG L+ + K+F  M   + VSW+S+I  +A+ G G +AL+L++ M+   V
Sbjct: 507 TNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDV 566

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P  VTF+ +L ACSHVGLV +G +   +M +   I+P  EH +C+VD++ RAG L EA 
Sbjct: 567 KPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAE 626

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
            FI +M   PD++VW+ LL AC  HG+ ++GK AAE +    P + A ++L+ NIY+  G
Sbjct: 627 GFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKG 686

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
            W++ A+    MK+ GV K  G SWIE++ ++H F V+D +HP+ + I+ +L ELL  M+
Sbjct: 687 NWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVEDSLHPERNKIYTMLEELLLQML 746

Query: 636 DEGYVPNKR 644
           D GYVP ++
Sbjct: 747 DAGYVPFQK 755



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 217/462 (46%), Gaps = 28/462 (6%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           P+ T + N +L+ Y KC  +++A K+FD MP R+ VSW ++++G+ +NG+      F+ +
Sbjct: 96  PDLT-LQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQ 154

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            L+ G    DQ +F  I+ AC       + + +H  V    +   +   NALI+ Y K  
Sbjct: 155 MLQSGVMP-DQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSN 213

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSV 264
                  VF  M  R++I+W ++I+G  Q     E L  F +M H G+  PN   + S  
Sbjct: 214 LIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVF 273

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            ACS L     GRQ+HG+  K  L  D+    +L DMY+KCG +  A  +F      D V
Sbjct: 274 SACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLV 333

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +   I+ GFA  G  +EA+  F +M   G+  D   V ++L      + L  G Q+H  I
Sbjct: 334 AWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYI 393

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKA 443
            K     +  V N L+ MY+KC +L D+I  F  M    + VSWN+++ A  RH    + 
Sbjct: 394 NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEV 453

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRIS 492
             L + M +    P  +T  ++L A +           H   +  G+    S+T      
Sbjct: 454 FRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNG---- 509

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                   ++D+  + G L  A    + M + PDV+ W +L+
Sbjct: 510 --------LIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSLI 542



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 140/517 (27%), Positives = 246/517 (47%), Gaps = 35/517 (6%)

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
           +R   S N  ++   +   F+     F+   +   + L  +++  ++SAC         K
Sbjct: 24  LRAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGK 83

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  +       ++T+ N ++  Y KC S    +KVF  M  RNV++WT+VI+G  QN 
Sbjct: 84  KIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNG 143

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
                L+ + +M    + P+  T+ S + ACS L  +  GRQ+H  + K    + +  ++
Sbjct: 144 QGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQN 203

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+ MY+K   + DA  +F      D +S   ++ GF+Q G+E EA+  F +M+  G+ +
Sbjct: 204 ALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYL 263

Query: 357 DPNMVSAVLG-VFGVDTSL---GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
            PN    + G VF   +SL     G+Q+H + IK     + F    L +MY+KCG L  +
Sbjct: 264 -PN--EFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCA 320

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             VF ++   + V+WN++IA FA  G+  +A+  + +M+ +G+ P ++T  SLL AC+  
Sbjct: 321 RVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSP 380

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
             + +GM+       ++++    +   C  ++ M  +   L +A  F E M    D++ W
Sbjct: 381 SELYQGMQV---HGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSW 437

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            A+L AC  H  +E   +   KL       P  YI + N+                   +
Sbjct: 438 NAILTACMRHDQAEE-VFRLLKLMCISQHRP-DYITLTNV-------------------L 476

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           G   ET +S IEI  QVH + +   ++      +G++
Sbjct: 477 GASAET-VS-IEIGNQVHCYALKTGLNCDTSVTNGLI 511


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 317/550 (57%), Gaps = 8/550 (1%)

Query: 102 CDQ--MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           C+Q  +R A+++ D +      +++T++   L+    D G      +   GF      S 
Sbjct: 69  CEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISN 128

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
            I+      + L    ++   +      E ++   N +I+ Y K G     RK+F +M  
Sbjct: 129 RILDMYIKCNSLVNAKRLFDEMA-----ERDLCSWNIMISGYAKAGRLQEARKLFDQMTE 183

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQ 278
           R+  +WTA+ SG V++  +EE L+LF  M        N  T  S++ A + +Q+L  G++
Sbjct: 184 RDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKE 243

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IHG + ++ L  D  + SAL DMY KCGS+ +A  IF+   + D VS T ++  + + G 
Sbjct: 244 IHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGR 303

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            EE   LF  ++K+GI  +    S VL       +  LGKQ+H  + +  F  + F  + 
Sbjct: 304 REEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAAST 363

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY+KCG+++++ +VF+ M   + VSW S+I+ +A++G   +AL+ +E +   G +P 
Sbjct: 364 LVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPD 423

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            +TF+ +L AC+H GLV+KG+E+  S+ E H ++  A+HYAC++D++ R+G L EA   I
Sbjct: 424 HITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDII 483

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           ++MP++PD  +W +LLG C IHG+ ++ K AAE LF  +P++PA Y  +ANIY+ +G W 
Sbjct: 484 DKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWG 543

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             A+  K M   GV K+ G+SWIEI+++VH F+V D  H ++  IH  L +L + M +EG
Sbjct: 544 GVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEG 603

Query: 639 YVPNKRFILH 648
           YVP+  F+LH
Sbjct: 604 YVPDTNFVLH 613



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 190/385 (49%), Gaps = 9/385 (2%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN ++S Y K  +++ A KLFD M  RD  SW  M SG++R+ + +     F+       
Sbjct: 158 WNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHEN 217

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           ++ ++ + +  L+A    +   + K IH  +   G + +  V +AL   Y KCGS    R
Sbjct: 218 FKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEAR 277

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            +F +   R+V++WTA+I    +    EEG  LF  +    I PN  T+   + AC+   
Sbjct: 278 HIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHA 337

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           A   G+Q+HG + ++         S L+ MY+KCG++++A ++F      D VS T ++ 
Sbjct: 338 AEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLIS 397

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKS 387
           G+AQNG  +EA+Q F  ++K+G +  P+ ++ V GV    T  GL  +      S+  K 
Sbjct: 398 GYAQNGQPDEALQFFELLLKSGTQ--PDHITFV-GVLSACTHAGLVDKGLEYFDSIKEKH 454

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALEL 446
             T        LI++ S+ G L+++  +  +M    +   W S++     HGN   A   
Sbjct: 455 GLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRA 514

Query: 447 YEEM-KLEGVEPTDVTFLSLLHACS 470
            E + ++E   P   T L+ ++A +
Sbjct: 515 AEALFEIEPENPATYTTLANIYATA 539



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 145/319 (45%), Gaps = 17/319 (5%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG  +H   ++     D           V+W++L   Y KC  +  A  +FD    RD
Sbjct: 238 LHLGKEIHGHILRIGLDLDG----------VVWSALSDMYGKCGSIGEARHIFDKTVDRD 287

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            VSW  M+  + + G  + GF  F   L+ G +  ++ +F+ +L+AC       + K +H
Sbjct: 288 VVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWP-NEFTFSGVLNACADHAAEELGKQVH 346

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             +   G++      + L+  Y KCG+  + R+VF  M   ++++WT++ISG  QN   +
Sbjct: 347 GYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPD 406

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESAL 298
           E L+ F  +      P+ +T++  + AC+    + +G +    I  K  L       + L
Sbjct: 407 EALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACL 466

Query: 299 MDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           +D+ S+ G +++A  I +    E D      +L G   +G     ++L  +  +A  EI+
Sbjct: 467 IDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHG----NLKLAKRAAEALFEIE 522

Query: 358 PNMVSAVLGVFGVDTSLGL 376
           P   +    +  +  + GL
Sbjct: 523 PENPATYTTLANIYATAGL 541


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 186/495 (37%), Positives = 290/495 (58%), Gaps = 6/495 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +++ ++  C        ++++H  V+  GYE +  + N LI  Y K G     R +F
Sbjct: 15  DAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLF 74

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            EM  RNV++WT +IS    + L  + L   + M    + PN  TY S + AC GL  L 
Sbjct: 75  DEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL- 133

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             RQ+HG + K+ L+SD+ + SAL+D YSK G   DA  +F      D V    I+ GFA
Sbjct: 134 --RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN   +E + L+ +M +A    D + +++VL        L LG+Q+H  ++K D   +  
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYD--QDLI 249

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           +NN L++MY KCG LED+  +F+RM   ++ +SW++MIA  A++G    AL+L+E MK +
Sbjct: 250 LNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSK 309

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G +P  +T L +L ACSH GLVN G  + +SM E   I P  EHY C++D++GRAG L E
Sbjct: 310 GPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDE 369

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   I  M  +PD + W+ LLGAC +H + ++  YAA+++    P     YIL++NIY+ 
Sbjct: 370 AVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYAN 429

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           S +W++ A+  ++M+  GV K+ G SWIE+ KQVH+F++ D  HP+ + I   L++L++ 
Sbjct: 430 SQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQR 489

Query: 634 MIDEGYVPNKRFILH 648
           ++  GYVP+  F+L 
Sbjct: 490 LMRLGYVPDTNFVLQ 504



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 195/384 (50%), Gaps = 17/384 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N+L++ Y+K   +  A  LFD+MP R+ VSW TM+S +  +        F    L 
Sbjct: 51  TFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLR 110

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G  + +  +++ +L ACD   L+L  + +H  +   G E +V V +ALI +Y K G   
Sbjct: 111 EGV-RPNMYTYSSVLRACD-GLLNL--RQLHGSILKVGLESDVFVRSALIDTYSKLGEQH 166

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               VF EM   +++ W ++I G  QN   +E L L+ +M       +  T  S + AC+
Sbjct: 167 DALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACT 226

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMT 327
           GL  L  GRQ+H  +  L    DL + +AL+DMY KCGS+EDA  +F     E D +S +
Sbjct: 227 GLALLELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWS 284

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLII 385
            ++ G AQNGF  +A++LF  M   G +  PN ++ +LGV    +  GL      +   +
Sbjct: 285 TMIAGLAQNGFSADALKLFEAMKSKGPK--PNYIT-ILGVLFACSHAGLVNDGWYYFQSM 341

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFK 442
           K  F  +P   +   +I++  + G L++++K+   M    ++V+W  ++ A   H N   
Sbjct: 342 KEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKN--V 399

Query: 443 ALELYEEMKLEGVEPTDVTFLSLL 466
            L +Y   ++  ++P D     LL
Sbjct: 400 DLAIYAAKEILKLDPADAGTYILL 423



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 167/338 (49%), Gaps = 17/338 (5%)

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +K    MH   ++ +++TY   +  C    A+ + R +H  ++    +    + + L++M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y K G +++A  +F+   + + VS T ++  ++ +    +A+   + M++ G+   PNM 
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVR--PNMY 118

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +    +   D  L L +Q+H  I+K    S+ FV + LI+ YSK G+  D++ VF+ M  
Sbjct: 119 TYSSVLRACDGLLNL-RQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMIT 177

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
            + V WNS+I  FA++ +G + L LY+ MK         T  S+L AC+ + L+  G + 
Sbjct: 178 GDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQ- 236

Query: 482 LKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
                 VH +    +      ++DM  + G L +A     RM  + DV+ W  ++   + 
Sbjct: 237 ----VHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQ 292

Query: 540 HGDSEMGKYAAEKLFLA-QPDSPAP-YI-LMANIYSCS 574
           +G S      A KLF A +   P P YI ++  +++CS
Sbjct: 293 NGFSA----DALKLFEAMKSKGPKPNYITILGVLFACS 326


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 196/600 (32%), Positives = 341/600 (56%), Gaps = 15/600 (2%)

Query: 52  SISAKEG--HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +++A EG  +  LG  +HA+ +K+   F+   VY       + N+L++ Y +C +M  A 
Sbjct: 270 ALTACEGFSYAKLGKEIHAAVLKSTHSFE---VY-------VCNALIAMYARCGKMLEAG 319

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++   M   D V+WN+++ G+++N  +     FF   +  G ++ D+ S T +++A  R 
Sbjct: 320 RILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAG-HKPDEVSLTSVIAASGRL 378

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
              L    +H  V   G++  + VGN LI  Y KC  +    + F  M  +++I+WT +I
Sbjct: 379 SNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTII 438

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +G   N  + E L+LF  +    +  + +   S + ACS L+++   ++IH  + +  L 
Sbjct: 439 AGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL- 497

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            D  I++ L+D+Y KC ++  A ++FE  +  D VS T ++   A NG E EA++LF +M
Sbjct: 498 IDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRM 557

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            + G+  D   +  +L      ++L  G++IH  +++  F     +   +++MY+ CGDL
Sbjct: 558 AETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDL 617

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + +  VF R+  +  + + SMI A+  HG G  ++EL+ +M+ E V P  ++FL+LL+AC
Sbjct: 618 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYAC 677

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           SH GL+++G  FLK M   +++ P  EHY C+VDM+GRA  ++EA  F++ M  +P   V
Sbjct: 678 SHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEV 737

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W ALL AC  H + E+G+ AA++L   +P +P   +L++N+++  GRW +  K   +MK 
Sbjct: 738 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 797

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR-LMIDEGYVPNKRFILH 648
            G++K  G SWIE++ +VH F   DK HP+   I+  L+E+ R L  + GY+ + +FILH
Sbjct: 798 SGMEKHPGCSWIEMDGKVHKFTARDKSHPETKEIYEKLSEVTRKLERESGYLADTKFILH 857



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 150/490 (30%), Positives = 247/490 (50%), Gaps = 16/490 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           I N+L+S Y K D +  A +LFD    + D V WN+++S +  +G+       F+   E+
Sbjct: 199 IVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFR---EM 255

Query: 150 GFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                   S+TI+  L+AC+    + + K IH  V    +  EV V NALI  Y +CG  
Sbjct: 256 QMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKM 315

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               ++   M   +V+TW ++I G VQN +Y+E L+ F  M      P+ ++ L+SV+A 
Sbjct: 316 LEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVS-LTSVIAA 374

Query: 268 SG-LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           SG L  L  G ++H  + K    S+L + + L+DMYSKC       + F    E D +S 
Sbjct: 375 SGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISW 434

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           T I+ G+A N    EA+QLF  + K  +EID  M+ ++L    V  S+ + K+IH  I++
Sbjct: 435 TTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILR 494

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                +  + N L+++Y KC ++  + +VF  +  ++ VSW SMI++ A +GN  +A+EL
Sbjct: 495 KGLI-DTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVEL 553

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M   G+    V  L +L A + +  + KG E    +               VVDM  
Sbjct: 554 FRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLR-KGFCLEGSIAVAVVDMYA 612

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPY 564
             G L  A++  +R+  K  +L + +++ A  +HG    GK + E     + +  SP   
Sbjct: 613 CCGDLQSAKAVFDRIERK-GLLQYTSMINAYGMHG---CGKASVELFNKMRHENVSPDHI 668

Query: 565 ILMANIYSCS 574
             +A +Y+CS
Sbjct: 669 SFLALLYACS 678



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 231/457 (50%), Gaps = 19/457 (4%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+FD+M  R   +WN ++  ++ NGE      F  R++ +    LD  SF ++L AC + 
Sbjct: 117 KVFDEMRDRTAFAWNALIGAYVSNGEPASAL-FIYRNMRVEGVPLDLYSFPVLLKACGKL 175

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAV 228
                   +HC++   G+     + NAL++ Y K    S+ +++F   + + + + W ++
Sbjct: 176 RDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSI 235

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S    +    E L+LF +M +     NS T +S++ AC G      G++IH  + K   
Sbjct: 236 LSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTH 295

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
             ++ + +AL+ MY++CG + +A +I       D V+   ++ G+ QN   +EA+Q F  
Sbjct: 296 SFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCD 355

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M+ AG + D   +++V+   G  ++L  G ++H+ +IK  + SN  V N LI+MYSKC  
Sbjct: 356 MIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNL 415

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
                + F  M  ++ +SW ++IA +A +    +AL+L+ ++  + +E  ++   S+L A
Sbjct: 416 TCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRA 475

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGRAGLLIEARSFIERMPV 523
           CS    V K M  +K   E+H    R      V     VD+ G+   +  A    E +  
Sbjct: 476 CS----VLKSMLIVK---EIHCHILRKGLIDTVIQNELVDVYGKCRNMGYASRVFESIKG 528

Query: 524 KPDVLVWQALLGACSIHGDS----EMGKYAAEKLFLA 556
           K DV+ W +++ + +++G+     E+ +  AE   LA
Sbjct: 529 K-DVVSWTSMISSSALNGNENEAVELFRRMAETGLLA 564



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 145/282 (51%), Gaps = 5/282 (1%)

Query: 204 CGSSS--SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
           CG S   S  KVF EMR R    W A+I   V N      L ++  M +  +  +  ++ 
Sbjct: 107 CGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFP 166

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
             + AC  L+ +  G ++H +L KL   S   I +AL+ MY+K   +  A ++F+ ++E 
Sbjct: 167 VLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEK 226

Query: 322 -DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQ 379
            D V    IL  ++ +G   E +QLF +M   G   +   +VSA+    G   +  LGK+
Sbjct: 227 GDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYA-KLGKE 285

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH+ ++KS  +   +V N LI MY++CG + ++ ++   M   + V+WNS+I  + ++  
Sbjct: 286 IHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLM 345

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
             +AL+ + +M   G +P +V+  S++ A   +  +  GME 
Sbjct: 346 YKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMEL 387


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 174/462 (37%), Positives = 278/462 (60%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+E +  + N ++  + KCG     R++F EM  RN+++W  +ISGLV    + E  +LF
Sbjct: 5   GFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLF 64

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           + M     +  S T+   + A +GL+ +  GRQ+H    K+ +  D+ +  AL+DMYSKC
Sbjct: 65  LNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKC 124

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           GS+EDA  +FE   E   V    I+ G+A +G+ EEA+ ++ +M  +G+++D    S ++
Sbjct: 125 GSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIV 184

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
            +     S+   KQ H+ +I+  F S+   N  L++ YSK G +ED+  VF +MA +N +
Sbjct: 185 RICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVI 244

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN++I  +  HG G +A+EL+E+M  E + P  +TFL++L ACSH GL  +G E  +SM
Sbjct: 245 SWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSM 304

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              +RI PRA HYAC+++++GR GLL EA + I   P KP   +W ALL AC ++ + E+
Sbjct: 305 GRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFEL 364

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           GK+AAEKL+  +PD    YI++ NIY+ +G  KE A  +  +K  G+      SWIE+++
Sbjct: 365 GKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKR 424

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + H F+  D  HPQ   I+  + +L+  +   GYVPN++ +L
Sbjct: 425 RPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLL 466



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 203/434 (46%), Gaps = 40/434 (9%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L  ++KC  M +A +LFD+MP R+ VSWNT++SG +  G+F   F  F    E  F 
Sbjct: 14  NRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWE-EFS 72

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                +F +++ A    EL  + + +H      G  +++ V  ALI  Y KCGS    R 
Sbjct: 73  DAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARF 132

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  +  + W  +I+G   +   EE L ++ +M    +  +  T+   V  C+ L +
Sbjct: 133 VFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLAS 192

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   +Q H  L +    SD+   +AL+D YSK G +EDA  +F+     + +S   ++ G
Sbjct: 193 VEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGG 252

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  +G   EA++LF +M++    ++PN ++  L V    +  GL +              
Sbjct: 253 YGNHGRGSEAVELFEQMIQE--RMNPNHIT-FLAVLSACSHSGLSE-------------- 295

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
                       +  ++  S+   +R+ PR ++ +  MI    R G   +AL L   ++ 
Sbjct: 296 ------------RGWEIFQSMGRDNRIKPR-AMHYACMIELMGREGLLDEALAL---IRG 339

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISP-RAEHYACVVDMVGRAGL 510
              +PT   + +LL AC     VN+  E  K   E ++ + P +  +Y  ++++   AG 
Sbjct: 340 APFKPTANMWAALLTACR----VNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGN 395

Query: 511 LIEARSFIERMPVK 524
           L EA   +  +  K
Sbjct: 396 LKEAADVVHTLKRK 409



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +I + F  + ++ N ++ M+ KCG + D+ ++F  M  RN VSWN++I+     G+  +A
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
             L+  M  E  +    TF  ++ A + + L++ G + L + T    I         ++D
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQ-LHACTLKMGIGDDIFVSCALID 119

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M  + G + +AR   E MP K  V  W  ++   ++HG SE
Sbjct: 120 MYSKCGSIEDARFVFEEMPEKTTV-GWNTIIAGYALHGYSE 159


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 305/542 (56%), Gaps = 3/542 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A KLF  M   D    NTM+ G+ R+         +   +E G   +D  ++  +L+AC 
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGV-PVDNYTYPFVLAACA 122

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           R     + +  HC V   G+  ++ V NALI  Y  CGS      VF E  VR+V+TW  
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNI 182

Query: 228 VISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           +I+  +   L E+   L  +M  L  + P+ +T +S V AC+ L  L  G+ +H    +L
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L  +L + +A++DMY KC  +E A ++F    E D +S T +L G A++G+ +EA+ LF
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALF 302

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            KM    IE+D   +  VL       +L  GK IH LI K +   +  +   L++MY+KC
Sbjct: 303 QKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKC 362

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G ++ +++VF RM  RN  +WN++I   A HG+G  A+ L+++M+ + + P DVTF++LL
Sbjct: 363 GSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G+   ++M    +I PR EHY CVVD++ RA  + +A +FIE MP+K +
Sbjct: 423 CACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKAN 482

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            ++W  LLGAC   G  ++ +    ++   +PDS   Y++++N+Y+   +W    K  K+
Sbjct: 483 SVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQ 542

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM-IDEGYVPNKRF 645
           MK  G++K  G SWIE+   +H FV  D+ H Q + I+ ++ E+ R + +D G+VP    
Sbjct: 543 MKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTAN 602

Query: 646 IL 647
           +L
Sbjct: 603 VL 604



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 220/459 (47%), Gaps = 35/459 (7%)

Query: 3   SKWVFLKLNSNFPF-CSSLVSPFITKIIQDPTSSTS--------KLVLDNYVDISRLLSI 53
           ++ +F ++ +  PF C++++  +     Q+P  + S         + +DNY     +L+ 
Sbjct: 64  ARKLFTQMQNPDPFICNTMIRGYARS--QNPYEAVSLYYFMVERGVPVDNYT-YPFVLAA 120

Query: 54  SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFD 113
            A+ G   LG   H   +K              +   + N+L+ FY  C     A  +FD
Sbjct: 121 CARLGAVKLGRRFHCEVLKN----------GFGSDLFVINALIQFYHNCGSFGCACDVFD 170

Query: 114 DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL 173
           +  +RD V+WN M++  L  G  +  F       +L   + D+ +   ++ AC +     
Sbjct: 171 ESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLE 230

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             K +H      G +E + V NA++  Y KC    S ++VF  +R ++V++WT+++SGL 
Sbjct: 231 RGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLA 290

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           ++  ++E L LF KM L  I  + +T +  + AC+   AL +G+ IH ++ K  +  DL 
Sbjct: 291 KSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLV 350

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           +E+AL+DMY+KCGS++ A Q+F      +  +   ++ G A +G  E+A+ LF +M    
Sbjct: 351 LETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDK 410

Query: 354 IEIDPNMVSAVLGVFG----VDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCG 407
           +  D     A+L        VD  L + +      +K+ F   P + +   ++++  +  
Sbjct: 411 LMPDDVTFIALLCACSHAGLVDEGLAMFQA-----MKNKFQIEPRMEHYGCVVDLLCRAR 465

Query: 408 DLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALE 445
            ++D++     M  + NSV W +++ A  R G  F   E
Sbjct: 466 KVDDALAFIENMPIKANSVLWATLLGA-CRSGGHFDLAE 503



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 175/342 (51%), Gaps = 5/342 (1%)

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G  +  RK+F +M+  +      +I G  ++Q   E + L+  M    +  ++ TY   +
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+ L A+  GR+ H  + K    SDL + +AL+  Y  CGS   A  +F+ +   D V
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHS 382
           +  +++      G  E+A  L  +M K    + P+ V+ V  V       +L  GK +HS
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLD-NLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
              +     N  VNN +++MY KC D+E + +VF+R+  ++ +SW SM++  A+ G   +
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQE 297

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL L+++M+L  +E  ++T + +L AC+  G +++G +++  + +   I+        +V
Sbjct: 298 ALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALV 356

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           DM  + G +  A     RM V+ +V  W AL+G  ++HG  E
Sbjct: 357 DMYAKCGSIDLALQVFRRMRVR-NVFTWNALIGGLAMHGHGE 397



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 138/289 (47%), Gaps = 11/289 (3%)

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++ + +Q H +L +  L  +    S L+     S  G +  A ++F   +  D      +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+A++    EA+ L+  MV+ G+ +D      VL       ++ LG++ H  ++K+ F
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ FV N LI  Y  CG    +  VF     R+ V+WN MI A    G   KA +L +E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 450 M-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           M KL+ + P +VT +SL+ AC+ +G + +G +FL S ++   +         ++DM  + 
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHSYSKELGLDENLRVNNAILDMYCKC 261

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
             +  A+    R+  K DVL W ++L   +  G      Y  E L L Q
Sbjct: 262 DDIESAQEVFNRIREK-DVLSWTSMLSGLAKSG------YFQEALALFQ 303



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 36/213 (16%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINM--YSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           TS+   KQ H+L++++    NP  ++ LI+    S  GDL  + K+F++M   +    N+
Sbjct: 22  TSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNT 81

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF-------- 481
           MI  +AR  N ++A+ LY  M   GV   + T+  +L AC+ +G V  G  F        
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNG 141

Query: 482 ----LKSMTEVHRISPRAEHYACVVDMVGRA------------------GLLIEARSFIE 519
               L  +  + +       + C  D+   +                  GL  +A   ++
Sbjct: 142 FGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLD 201

Query: 520 RMP----VKPDVLVWQALLGACSIHGDSEMGKY 548
            M     ++PD +   +L+ AC+  G+ E GK+
Sbjct: 202 EMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/618 (33%), Positives = 331/618 (53%), Gaps = 61/618 (9%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           I N+L++ Y +C  +  A  +FD++  R   D +SWN++VS  +++         F + +
Sbjct: 47  ICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK-M 105

Query: 148 ELGFYQL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            L  ++       D  S   IL AC   +    +K +H      G   +V VGNALI +Y
Sbjct: 106 TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAY 165

Query: 202 FKCGSSSSGRKVFGEMRVRNVI-----------------------------------TWT 226
            KCG   +  KVF  M  ++V+                                   TWT
Sbjct: 166 AKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWT 225

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           AVI+G  Q     E L +F +M      PN +T +S + AC+ L A  +G +IH    K 
Sbjct: 226 AVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKN 285

Query: 287 AL----------QSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFA 334
            L            DL + +AL+DMYSKC S + A  IF+    EE + V+ TV++ G A
Sbjct: 286 CLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHA 345

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--T 390
           Q G   +A++LFV+M+     + PN   +S +L       ++ +GKQIH+ +++     +
Sbjct: 346 QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDS 405

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S  FV N LINMYSKCGD++ +  VF  M+ ++++SW SM+  +  HG G +AL+++++M
Sbjct: 406 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 465

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  G  P D+TFL +L+ACSH G+V++G+ +  SM+  + ++PRAEHYA  +D++ R G 
Sbjct: 466 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 525

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   ++ MP++P  +VW ALL AC +H + E+ ++A  KL     ++   Y L++NI
Sbjct: 526 LDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNI 585

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +GRWK+ A+    MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +L  L
Sbjct: 586 YATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESL 645

Query: 631 LRLMIDEGYVPNKRFILH 648
           +  +   GYVP   F LH
Sbjct: 646 IDRIKAMGYVPETNFALH 663



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 206/449 (45%), Gaps = 62/449 (13%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  +   +L AC            H L+   G+E  V + NAL+  Y +CGS      
Sbjct: 7   RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASM 66

Query: 213 VFGEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSS 263
           +F E+  R   +VI+W +++S  V++      L LF KM    H    N  S  ++ ++ 
Sbjct: 67  IFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNI 126

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC  L+A+ + +++HG   +     D+ + +AL+D Y+KCG +E+A ++F   E  D 
Sbjct: 127 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 186

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID-------------------------- 357
           VS   ++ G++Q+G  + A +LF  M K  I +D                          
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 246

Query: 358 -------PNMVSAVLGVFGVDTSLGL---GKQIHS-------LIIKSDF---TSNPFVNN 397
                  PN V+ ++ V     SLG    G +IH+       L + +DF     +  V N
Sbjct: 247 MIFSGSLPNCVT-IISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 305

Query: 398 GLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-- 453
            LI+MYSKC   + +  +F    +  RN V+W  MI   A++G+   AL+L+ EM  E  
Sbjct: 306 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 365

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLI 512
           GV P   T   +L AC+H+  +  G +    +   H+    A   A C+++M  + G + 
Sbjct: 366 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 425

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            AR   + M  K   + W +++    +HG
Sbjct: 426 TARHVFDSMSQK-SAISWTSMMTGYGMHG 453



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 142/549 (25%), Positives = 240/549 (43%), Gaps = 99/549 (18%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDM-----PMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V WN++++ Y +    + A +LF +M     P+ D V+W  +++G+ + G        F+
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPL-DMVTWTAVIAGYSQRGCSHEALNVFR 245

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSK--------MIHCLVYL----CGYEEEVT 192
           + +  G    +  +   +LSAC  + L   S+        + +CL+ L     G +E++ 
Sbjct: 246 QMIFSGSLP-NCVTIISVLSAC--ASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLM 302

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRV--RNVITWTAVISGLVQNQLYEEGLKLFVKM-- 248
           V NALI  Y KC S  + R +F ++ +  RNV+TWT +I G  Q     + LKLFV+M  
Sbjct: 303 VYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS 362

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL--QSDLCIESALMDMYSKCG 306
               + PN+ T    +MAC+ L A+  G+QIH  + +      S   + + L++MYSKCG
Sbjct: 363 EPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCG 422

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            V+ A  +F+   +   +S T ++ G+  +G   EA+ +F KM KAG   D         
Sbjct: 423 DVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPD--------- 473

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                        I  L++    +    V+ GL           DS+     + PR +  
Sbjct: 474 ------------DITFLVVLYACSHCGMVDQGL--------SYFDSMSADYGLTPR-AEH 512

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC---SHVGLVNKGMEFLK 483
           +   I   AR G   KA +  ++M +   EPT V +++LL AC   S+V L    +  L 
Sbjct: 513 YAYAIDLLARFGRLDKAWKTVKDMPM---EPTAVVWVALLSACRVHSNVELAEHALNKLV 569

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGL---LIEARSFIERMPVK--PDVLVWQALLGACS 538
            M   +  S     Y  + ++   AG    +   R  +++  +K  P     Q   G  S
Sbjct: 570 EMNAENDGS-----YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTAS 624

Query: 539 IH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
              GD             + P SP  Y L+ ++             I R+K MG   ET 
Sbjct: 625 FFVGDR------------SHPLSPQIYALLESL-------------IDRIKAMGYVPETN 659

Query: 598 ISWIEIEKQ 606
            +  +++++
Sbjct: 660 FALHDVDEE 668



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 133/286 (46%), Gaps = 20/286 (6%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N V I  +LS  A  G F  G  +HA  +K      + +        +++N+L+  Y 
Sbjct: 253 LPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYS 312

Query: 101 KCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           KC   + A  +FDD+P+  R+ V+W  M+ G  + G+ +     F   +    Y +   +
Sbjct: 313 KCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP-YGVAPNA 371

Query: 159 FTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVT---VGNALITSYFKCGSSSSGRKV 213
           +TI  IL AC       + K IH  V L  ++ + +   V N LI  Y KCG   + R V
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYV-LRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 430

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  ++ I+WT++++G   +    E L +F KM      P+ +T+L  + ACS     
Sbjct: 431 FDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC--- 487

Query: 274 CEGRQIHGILWKLALQSDLCIE------SALMDMYSKCGSVEDAWQ 313
             G    G+ +  ++ +D  +       +  +D+ ++ G ++ AW+
Sbjct: 488 --GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK 531



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 23/209 (11%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M++AG  +D   +  VL   G   S   G   H LI  + F SN F+ N L+ MYS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 409 LEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-PTD----- 459
           LE++  +F  +  R   + +SWNS+++A  +  N + AL+L+ +M L   E PT+     
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIE 513
           ++ +++L AC         ++ +    EVH  + R   +        ++D   + GL+  
Sbjct: 121 ISIVNILPACG-------SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGD 542
           A      M  K DV+ W A++   S  G+
Sbjct: 174 AVKVFNMMEFK-DVVSWNAMVAGYSQSGN 201



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N   IS +L   A      +G  +HA  ++  + +D+       +A  + N L++ Y
Sbjct: 367 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ-YDS-------SAYFVANCLINMY 418

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +FD M  +  +SW +M++G+  +G        F +  + GF   D  +F
Sbjct: 419 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVP-DDITF 477

Query: 160 TIILSAC 166
            ++L AC
Sbjct: 478 LVVLYAC 484


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/558 (35%), Positives = 312/558 (55%), Gaps = 6/558 (1%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   +  A  LFDDMP RD  SWN M+SG ++NG            + L    
Sbjct: 212 SLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE-MRLEGIN 270

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   IL  C +      + +IH  V   G E E+ V NALI  Y K G+    +KV
Sbjct: 271 MDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKV 330

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F +M +R+V++W ++I+   QN         F KM L  + P+ LT +S     +  +  
Sbjct: 331 FQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDY 390

Query: 274 CEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              R +HG + +   L   + I +A+MDMY+K G ++ A ++F      D VS   ++ G
Sbjct: 391 KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISG 450

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + QNG   EA++++ +M++   EI  N  +  ++L  +    +L  G +IH  +IK++  
Sbjct: 451 YTQNGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLH 509

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   LI++Y KCG L D++ +F ++   +SV WN++I+    HG+G KAL+L+ EM
Sbjct: 510 LDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREM 569

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + EGV+P  VTF+SLL ACSH GLV++G  F   M E + I P  +HY C+VD++GRAG 
Sbjct: 570 QDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGF 628

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L  A  FI+ MP+ PD  +W ALLGAC IHG+ E+GK+A+++LF    ++   Y+L++NI
Sbjct: 629 LEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNI 688

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+  G+W+   K     +E G+ K  G S IE+ ++V  F   ++ HP+   I+  L  L
Sbjct: 689 YANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRIL 748

Query: 631 LRLMIDEGYVPNKRFILH 648
              M   GY+P+  F+L 
Sbjct: 749 TAKMKSLGYIPDYSFVLQ 766



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 151/555 (27%), Positives = 272/555 (49%), Gaps = 27/555 (4%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y     +  +   FD +  +D  +WN+M+S ++RNG F      F + L +  +Q 
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 155 DQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           D  +F  +L AC     +LV  + IHC V+  G++ +V V  +LI  Y + G     R +
Sbjct: 174 DFYTFPPVLKACQ----TLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSL 229

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F +M  R++ +W A+ISGL+QN    + L +  +M L  IN +S+T  S +  C+ L  +
Sbjct: 230 FDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDI 289

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
                IH  + K  L+ +L + +AL++MY+K G++ DA ++F+     D VS   I+  +
Sbjct: 290 STATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAY 349

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QN     A   F KM   G+E D   + ++  +          + +H  I++  +    
Sbjct: 350 EQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEA 409

Query: 394 FV-NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-K 451
            V  N +++MY+K G ++ + KVF+ +  ++ VSWN++I+ + ++G   +A+E+Y  M +
Sbjct: 410 VVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEE 469

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
              ++    T++S+L A +HVG + +GM     + + + +        C++D+ G+ G L
Sbjct: 470 CREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTN-LHLDVFVGTCLIDLYGKCGRL 528

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMA 568
           ++A     ++P +  V  W A++    IHG  E     A KLF    D    P     ++
Sbjct: 529 VDAMCLFYQVPRESSV-PWNAIISCHGIHGHGE----KALKLFREMQDEGVKPDHVTFIS 583

Query: 569 NIYSC--SGRWKERAKAIKRMKEMGVD---KETG-----ISWIEIEKQVHSFVVDDKMHP 618
            + +C  SG   E       M+E G+    K  G     +      +  + F+ D  +HP
Sbjct: 584 LLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHP 643

Query: 619 QADTIHGVLAELLRL 633
            A +I G L    R+
Sbjct: 644 DA-SIWGALLGACRI 657



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 196/394 (49%), Gaps = 20/394 (5%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           ++  F  +  +C ++   L++K +H L+ + G  +   +   L+  Y   G  S  R  F
Sbjct: 75  EEIDFNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTF 131

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQAL 273
            +++ ++V TW ++IS  V+N  + E +  F ++ L      +  T+   + AC   Q L
Sbjct: 132 DQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTL 188

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +GR+IH  ++KL  Q D+ + ++L+ MYS+ G V  A  +F+     D  S   ++ G 
Sbjct: 189 VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGL 248

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QNG   +A+ +  +M   GI +D   V+++L V      +     IH  +IK       
Sbjct: 249 IQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFEL 308

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV+N LINMY+K G+L D+ KVF +M  R+ VSWNS+IAA+ ++ +   A   + +M+L 
Sbjct: 309 FVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLN 368

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGR 507
           G+EP  +T +SL        +  +  ++  S +    I  R      VV      DM  +
Sbjct: 369 GLEPDLLTLVSL------ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAK 422

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            G++  A      +PVK DV+ W  L+   + +G
Sbjct: 423 LGVIDSAHKVFNLIPVK-DVVSWNTLISGYTQNG 455



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 201/430 (46%), Gaps = 29/430 (6%)

Query: 25  ITKIIQDPTSSTSKLVLD---------NYVDISRLLSISAKEGHFHLGPSLHASFIK--- 72
           I+ +IQ+  ++ +  VLD         + V ++ +L + A+ G       +H   IK   
Sbjct: 245 ISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGL 304

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
            FE F             + N+L++ Y K   + +A K+F  M +RD VSWN++++ + +
Sbjct: 305 EFELF-------------VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQ 351

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEV 191
           N +     GFF + ++L   + D  +   + S   +S     S+ +H  +   G+  E V
Sbjct: 352 NDDPVTARGFFFK-MQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAV 410

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HL 250
            +GNA++  Y K G   S  KVF  + V++V++W  +ISG  QN L  E ++++  M   
Sbjct: 411 VIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEEC 470

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             I  N  T++S + A + + AL +G +IHG L K  L  D+ + + L+D+Y KCG + D
Sbjct: 471 REIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVD 530

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F        V    I+     +G  E+A++LF +M   G++ D     ++L     
Sbjct: 531 AMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSH 590

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNS 429
              +  GK    L+ +     +      ++++  + G LE +      M      S W +
Sbjct: 591 SGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGA 650

Query: 430 MIAAFARHGN 439
           ++ A   HGN
Sbjct: 651 LLGACRIHGN 660


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 221/674 (32%), Positives = 352/674 (52%), Gaps = 67/674 (9%)

Query: 41  LDNYVDIS-RLLSISAKEGHFHLGPSLHAS----FIKTFEPFDNQNVYNVPNATV-IWNS 94
           LD+ +++S R+L    +  HF L   L A       +    F      N   + V I N+
Sbjct: 98  LDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNA 157

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           L++ Y +C  +  A  +FD++  R   D +SWN++VS  +++         F + + L  
Sbjct: 158 LVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK-MTLIV 216

Query: 152 YQL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           ++       D  S   IL AC   +    +K +H      G   +V VGNALI +Y KCG
Sbjct: 217 HEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCG 276

Query: 206 SSSSGRKVFGEMRVRNVI-----------------------------------TWTAVIS 230
              +  KVF  M  ++V+                                   TWTAVI+
Sbjct: 277 LMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIA 336

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL-- 288
           G  Q     E L +F +M      PN +T +S + AC+ L A  +G +IH    K  L  
Sbjct: 337 GYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLT 396

Query: 289 --------QSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGF 338
                     DL + +AL+DMYSKC S + A  IF+    EE + V+ TV++ G AQ G 
Sbjct: 397 LDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGD 456

Query: 339 EEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPF 394
             +A++LFV+M+     + PN   +S +L       ++ +GKQIH+ +++     +S  F
Sbjct: 457 SNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYF 516

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V N LINMYSKCGD++ +  VF  M+ ++++SW SM+  +  HG G +AL+++++M+  G
Sbjct: 517 VANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 576

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
             P D+TFL +L+ACSH G+V++G+ +  SM+  + ++PRAEHYA  +D++ R G L +A
Sbjct: 577 FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKA 636

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              ++ MP++P  +VW ALL AC +H + E+ ++A  KL     ++   Y L++NIY+ +
Sbjct: 637 WKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATA 696

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           GRWK+ A+    MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +L  L+  +
Sbjct: 697 GRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRI 756

Query: 635 IDEGYVPNKRFILH 648
              GYVP   F LH
Sbjct: 757 KAMGYVPETNFALH 770



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/507 (26%), Positives = 229/507 (45%), Gaps = 63/507 (12%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ YL C     A+ + + +     V WN ++   ++ G  D       R L  G  +L
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRL 115

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +   +L AC            H L+   G+E  V + NAL+  Y +CGS      +F
Sbjct: 116 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 175

Query: 215 GEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSSVM 265
            E+  R   +VI+W +++S  V++      L LF KM    H    N  S  ++ ++ + 
Sbjct: 176 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 235

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC  L+A+ + +++HG   +     D+ + +AL+D Y+KCG +E+A ++F   E  D VS
Sbjct: 236 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 295

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---------------------------- 357
              ++ G++Q+G  + A +LF  M K  I +D                            
Sbjct: 296 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355

Query: 358 -----PNMVSAVLGVFGVDTSLGL---GKQIHS-------LIIKSDF---TSNPFVNNGL 399
                PN V+ ++ V     SLG    G +IH+       L + +DF     +  V N L
Sbjct: 356 FSGSLPNCVT-IISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 400 INMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GV 455
           I+MYSKC   + +  +F    +  RN V+W  MI   A++G+   AL+L+ EM  E  GV
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEA 514
            P   T   +L AC+H+  +  G +    +   H+    A   A C+++M  + G +  A
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG 541
           R   + M  K   + W +++    +HG
Sbjct: 535 RHVFDSMSQK-SAISWTSMMTGYGMHG 560



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/485 (24%), Positives = 214/485 (44%), Gaps = 78/485 (16%)

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           ++G  ++ SY  CG++     V   +     + W  +I   ++    +  + +  +M   
Sbjct: 52  SLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRA 111

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
               +  T    + AC  L +   G   HG++     +S++ I +AL+ MYS+CGS+E+A
Sbjct: 112 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 312 WQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
             IF+   +    D +S   I+    ++     A+ LF KM     E   N  S ++ + 
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 369 GVDTSLG------LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            +  + G        K++H   I++    + FV N LI+ Y+KCG +E+++KVF+ M  +
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-------------------------- 456
           + VSWN+M+A +++ GN   A EL++ M+ E +                           
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 457 ---------PTDVTFLSLLHACSHVGLVNKGMEF----LKS--MTEVHRISPRAEH---Y 498
                    P  VT +S+L AC+ +G  ++GME     LK+  +T  +      E    Y
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
             ++DM  +      ARS  + +P++  +V+ W  ++G  + +GDS      A KLF+  
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSN----DALKLFVEM 467

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
                PY +  N Y+ S      A                ++ I I KQ+H++V+    H
Sbjct: 468 ISE--PYGVAPNAYTISCILMACAH---------------LAAIRIGKQIHAYVL---RH 507

Query: 618 PQADT 622
            Q D+
Sbjct: 508 HQYDS 512



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N   IS +L   A      +G  +HA  ++  + +D+       +A  + N L++ Y
Sbjct: 474 VAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ-YDS-------SAYFVANCLINMY 525

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +FD M  +  +SW +M++G+  +G        F +  + GF   D  +F
Sbjct: 526 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVP-DDITF 584

Query: 160 TIILSAC 166
            ++L AC
Sbjct: 585 LVVLYAC 591



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 8/153 (5%)

Query: 391 SNPFVN-----NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           S PF++      G++  Y  CG  + ++ V  R+ P  +V WN +I    + G    A+ 
Sbjct: 44  SEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAIN 103

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +   M   G      T   +L AC  +     G  F   +   +           +V M 
Sbjct: 104 VSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAF-HGLICCNGFESNVFICNALVAMY 162

Query: 506 GRAGLLIEARSFIERMPVK--PDVLVWQALLGA 536
            R G L EA    + +  +   DV+ W +++ A
Sbjct: 163 SRCGSLEEASMIFDEITQRGIDDVISWNSIVSA 195


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 211/626 (33%), Positives = 337/626 (53%), Gaps = 17/626 (2%)

Query: 23  PFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNV 82
           PF+ K      SST    L++ +   +LL +SA   +   G  +HA  I T +   + N+
Sbjct: 13  PFLLK------SSTVGHPLEHTI---QLLKVSADTKNLKFGKMIHAHLIITNQATKD-NI 62

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
             V       NSL++ Y KCDQ+  A  LFD M  R+ VSW  +++G+  NG        
Sbjct: 63  VQV-------NSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRL 115

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           FK  + + + + ++  F  I+S+C  S   +     H      G      V NALI  Y 
Sbjct: 116 FKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYS 175

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           +         V+ E+   +V ++  +I+GL++N    E L++  +M    I  +++TY++
Sbjct: 176 RRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVT 235

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +   CS L+ L  G Q+H  +++   + D  + SA++DMY KCG++ +A ++F   +  +
Sbjct: 236 AFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKN 295

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS T IL  ++QNG  EEA+  F +M   G+  +    + +L      ++LG GK +H+
Sbjct: 296 VVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHT 355

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            I KS F  +  V N LINMYSK G +E + KVF  M  R+S++W++MI   + HG G +
Sbjct: 356 RIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGRE 415

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL +++EM      P  VTF+ +L AC+H+G V +G  +L  + +   I P  EHY C+V
Sbjct: 416 ALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIV 475

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
            ++ +AG L EA +F++  PVK DV+ W+ LL AC +H +  +GK  AE +    P    
Sbjct: 476 GLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVG 535

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            YIL++N+Y+ + RW    K  K M+E  V KE G SWIEI   +H FV + K HP+++ 
Sbjct: 536 TYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQ 595

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  + ELL ++   GYVP+   + H
Sbjct: 596 IYEKVQELLTMIRPMGYVPDIAAVFH 621


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 228/718 (31%), Positives = 361/718 (50%), Gaps = 117/718 (16%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEP-------------------F 77
           +L+ + Y +  +L S       F L  ++HA  I + F+P                   +
Sbjct: 8   RLLANRYAEKLQLCS-PQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVY 66

Query: 78  DNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNG 134
             Q    +PN   I   +L++ Y     +    ++F+  P  MRD+V +N M++G+  NG
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSA----------CDRSELSLVSKMIHCLVYL 184
           +       F R++    ++ D  +FT +LSA          C +   ++V   + C+   
Sbjct: 127 DGHSALELF-RAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCV--- 182

Query: 185 CGYEEEVTVGNALITSYFK--------CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
                  +V NAL++ Y K        C +  S RK+F EM  R+ +TWT +I+G V+N 
Sbjct: 183 -----SSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237

Query: 237 -------------------------------LYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                                           ++E L L  KM    I  + +TY + + 
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297

Query: 266 ACSGLQALCEGRQIHGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIF------ 315
           AC+ + +   G+Q+H  + K  L  +    L + +AL+ +Y K   V++A +IF      
Sbjct: 298 ACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357

Query: 316 ----------------------EFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
                                  F EE+   + +++TV++ G AQNGF +E ++LF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             G E      +  L    V  +L  G+Q+H+ ++   + S+  V N +I+MY+KCG +E
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  VF  M   + VSWNSMIAA  +HG+G KA+EL+++M  EGV P  +TFL++L ACS
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV KG  +  SM E + I+P  +HYA +VD+  RAG+   AR  I+ MP KP   VW
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVW 597

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           +ALL  C IHG+ ++G  AAE+LF   P +   Y+L++NIY+  GRW E AK  K M++ 
Sbjct: 598 EALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQ 657

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            V KE   SWIE+E +VH F+VDD +HP+  +++  L +L   M   GY+P+ +F+LH
Sbjct: 658 AVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLH 715


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 310/602 (51%), Gaps = 14/602 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL  +       LG  +HA  +KT +          P    + N L++ Y K D   +A 
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDS---------PPPPFLANYLINMYSKLDHPESAR 62

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQASFTIILSACDR 168
            +    P R+ VSW ++VSG  +NG F    F FF+   E G    D  +F  +  A   
Sbjct: 63  LVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRRE-GVAPND-FTFPCVFKAVAS 120

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
             L +  K IH L   CG   +V VG +    Y K       RK+F E+  RN+ TW A 
Sbjct: 121 LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAY 180

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           IS  V +   +E ++ F++       PNS+T+   + ACS    L  G Q+HG++++   
Sbjct: 181 ISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGF 240

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            +D+ + + L+D Y KC  +  +  IF      + VS   ++  + QN  +E+A  L+++
Sbjct: 241 DTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLR 300

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
             K  +E    M+S+VL        L LG+ IH+  +K+    N FV + L++MY KCG 
Sbjct: 301 SRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGC 360

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLL 466
           +EDS + F  M  +N V+ NS+I  +A  G    AL L+E+M   G  P    +TF+SLL
Sbjct: 361 IEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLL 420

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACS  G V  GM+   SM   + I P AEHY+C+VDM+GRAG++ +A  FI++MP+KP 
Sbjct: 421 SACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPT 480

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + VW AL  AC +HG   +G  AAE LF   P     ++L++N ++ +GRW E     + 
Sbjct: 481 ISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 540

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           MK +G+ K  G SWI ++ QVH+F   D+ H     I  +L +L   M   GY P+ +  
Sbjct: 541 MKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLS 600

Query: 647 LH 648
           L+
Sbjct: 601 LY 602


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 318/575 (55%), Gaps = 17/575 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I N+L++ Y K  ++ ++  L      RD V+WNT++S   +N +      +  R + 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL-REMV 294

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS 207
           L   + D+ + + +L AC   E+    K +H      G  +E   VG+AL+  Y  C   
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--LGLINPNSLTYLSSVM 265
            SGR+VF  M  R +  W A+I+G  QN+  +E L LF+ M    GL+  NS T    V 
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVP 413

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC    A      IHG + K  L  D  +++ LMDMYS+ G ++ A +IF   E+ D V+
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473

Query: 326 MTVILVGFAQNGFEEEAMQLFVKM------VKAG---IEIDPNMVS--AVLGVFGVDTSL 374
              ++ G+  +   E+A+ L  KM      V  G   + + PN ++   +L      ++L
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH+  IK++  ++  V + L++MY+KCG L+ S KVF ++  +N ++WN +I A+
Sbjct: 534 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 593

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             HGNG +A++L   M ++GV+P +VTF+S+  ACSH G+V++G+     M   + + P 
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           ++HYACVVD++GRAG + EA   +  MP        W +LLGA  IH + E+G+ AA+ L
Sbjct: 654 SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL 713

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P+  + Y+L+ANIYS +G W +  +  + MKE GV KE G SWIE   +VH FV  
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAG 773

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HPQ++ + G L  L   M  EGYVP+   +LH
Sbjct: 774 DSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLH 808



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 269/553 (48%), Gaps = 39/553 (7%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DNY     LL   A      LG  +HA   K          Y V + TV  N+L++ Y K
Sbjct: 96  DNYA-FPALLKAVADLQDMELGKQIHAHVYKFG--------YGVDSVTVA-NTLVNLYRK 145

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C       K+FD +  R+ VSWN+++S      +++M    F+  L+     ++ +SFT+
Sbjct: 146 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTL 202

Query: 162 --ILSACDR---SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
             +++AC      E  ++ K +H      G E    + N L+  Y K G  +S + + G 
Sbjct: 203 VSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGS 261

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW  V+S L QN+   E L+   +M L  + P+  T  S + ACS L+ L  G
Sbjct: 262 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321

Query: 277 RQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +++H    K  +L  +  + SAL+DMY  C  V    ++F+   +        ++ G++Q
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381

Query: 336 NGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           N  ++EA+ LF+ M + AG+  +   ++ V+       +    + IH  ++K     + F
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LE 453
           V N L++MYS+ G ++ ++++F +M  R+ V+WN+MI  +    +   AL L  +M+ LE
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501

Query: 454 ----------GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
                      ++P  +T +++L +C+ +  + KG E + +    + ++      + +VD
Sbjct: 502 RKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVD 560

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSP 561
           M  + G L  +R   +++P K +V+ W  ++ A  +HG+   G+ A +  ++ + Q   P
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN---GQEAIDLLRMMMVQGVKP 616

Query: 562 APYILMANIYSCS 574
                ++   +CS
Sbjct: 617 NEVTFISVFAACS 629



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 6/318 (1%)

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  ++   V++ L  E +  +V M +  I P++  + + + A + LQ +  G+QIH  ++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 285 KLALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           K     D + + + L+++Y KCG     +++F+   E + VS   ++         E A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 344 QLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLI 400
           + F  M+   +E     +VS V     +    GL  GKQ+H+  ++     N F+ N L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY K G L  S  +      R+ V+WN+++++  ++    +ALE   EM LEGVEP + 
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T  S+L ACSH+ ++  G E      +   +   +   + +VDM      ++  R   + 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 521 MPVKPDVLVWQALLGACS 538
           M     + +W A++   S
Sbjct: 364 M-FDRKIGLWNAMIAGYS 380


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 310/549 (56%), Gaps = 2/549 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ +SL+  Y KC++   AVKLFD+MP +D   WNT++S + ++G+F+    +F      
Sbjct: 142 VVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRF 201

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF + D  + T  +S+C R       + IH  +   G+  +  V  AL+  Y KCG    
Sbjct: 202 GF-EPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEM 260

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  + V+ W ++I+G          ++LF +M+   + P   T  S++MACS 
Sbjct: 261 AIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQ 320

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L EG+ +HG + +  +Q D+ + S+LMD+Y KCG VE A  IF+   +   VS  V+
Sbjct: 321 SAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVM 380

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+   G   +A++LF +M K+ +E D    ++VL       +L  G++IH+LI++ + 
Sbjct: 381 ISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNL 440

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +N  V   L++MY+KCG +E++  VF  +  R+ VSW SMI A+  HG  ++ALEL+ E
Sbjct: 441 GNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAE 500

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M    V+P  VTFL++L ACSH GLV+ G+     M  V+ I PR EHY+C++ ++GRAG
Sbjct: 501 MLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAG 560

Query: 510 LLIEARSFIERMP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
            L EA   ++  P +  D  +   L  AC +H + ++G   AE L    PD  + YI+++
Sbjct: 561 RLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILS 620

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+  G+W E      +MK++G+ K  G SWIEI +++  F V+D  H   + I  +L+
Sbjct: 621 NMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEGIGNILS 680

Query: 629 ELLRLMIDE 637
            L   M DE
Sbjct: 681 YLTSHMEDE 689



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 240/494 (48%), Gaps = 14/494 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW-NTMVSGFLRNGEFDMGFGFFKR 145
           N   +  +L+S Y+ C+    A  +FD +     +S  N +++G+ RN  +D   G F +
Sbjct: 36  NDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDK 95

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +     + D  ++  +L AC      ++ +MIH  +   G   ++ VG++L+  Y KC 
Sbjct: 96  LMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCN 155

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 K+F EM  ++V  W  VIS   Q+  +EE L+ F  M      P+S+T  +++ 
Sbjct: 156 EFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAIS 215

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ L  L  GR+IH  L     + D  + +AL+DMY KCG +E A ++FE       V+
Sbjct: 216 SCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVA 275

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSL 383
              ++ G+   G     +QLF +M   G++  P + +    +     S  L  GK +H  
Sbjct: 276 WNSMINGYGFKGDGISCIQLFKRMYSEGVK--PTLTTLTSTLMACSQSAQLLEGKFVHGY 333

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           II++    + F+N+ L+++Y KCG +E +  +F  M    +VSWN MI+ +   G  F A
Sbjct: 334 IIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDA 393

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+ EM    VEP  +TF S+L ACS +  + KG E    + E   +         ++D
Sbjct: 394 LRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVE-RNLGNNEVVMGALLD 452

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDS 560
           M  + G + EA    + +P + D++ W +++ A   HG      Y A +LF   L     
Sbjct: 453 MYAKCGAVEEAFGVFKCLPER-DLVSWTSMITAYGSHGRV----YEALELFAEMLQSNVK 507

Query: 561 PAPYILMANIYSCS 574
           P     +A + +CS
Sbjct: 508 PDRVTFLAILSACS 521



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 141/276 (51%), Gaps = 8/276 (2%)

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM-TVI 329
           ++L +G+ +H  +  L LQ+D+ +   L+ +Y  C   + A  +F+  E    +S+   +
Sbjct: 17  KSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGL 76

Query: 330 LVGFAQNGFEEEAMQLFVK-MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           + G+ +N   +EA+ LF K M    ++ D     +VL   G    + LG+ IH+ ++K  
Sbjct: 77  MAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEG 136

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              +  V + L+ MY+KC + E ++K+F  M  ++   WN++I+ + + G   +AL  + 
Sbjct: 137 LMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFG 196

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVG 506
            M+  G EP  VT  + + +C+ +  +++G E  K   E+     R + +  A +VDM G
Sbjct: 197 MMRRFGFEPDSVTITTAISSCARLLDLDRGREIHK---ELVNSGFRMDSFVSAALVDMYG 253

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           + G L  A    E+MP K  V+ W +++      GD
Sbjct: 254 KCGQLEMAIEVFEQMPNKT-VVAWNSMINGYGFKGD 288



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           N+ N  V+  +LL  Y KC  +  A  +F  +P RD VSW +M++ +  +G        F
Sbjct: 439 NLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELF 498

Query: 144 KRSLELGFYQLDQASFTIILSACDRSEL 171
              L+    + D+ +F  ILSAC  + L
Sbjct: 499 AEMLQSNV-KPDRVTFLAILSACSHAGL 525


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 311/559 (55%), Gaps = 5/559 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  YL+  ++R+A + FD+M  RD  +WN M+SG  RN       G F R +  G   
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG 168

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D  + + +L  C       ++  +H      G ++E+ V NA+I  Y K G     RKV
Sbjct: 169 -DAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKV 227

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  R+++TW ++ISG  Q       +++F  M    ++P+ LT LS   A +    +
Sbjct: 228 FDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDI 287

Query: 274 CEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           C GR +H  + +      D+   +A++DMY+K   +E A ++F+     D VS   ++ G
Sbjct: 288 CGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITG 347

Query: 333 FAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           + QNG   EA+ ++  M K  G++       +VL  +    +L  G ++H+L IK+    
Sbjct: 348 YMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNL 407

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V   +I++Y+KCG L++++ +F +   R++  WN++I+    HG+G KAL L+ +M+
Sbjct: 408 DVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQ 467

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
            EG+ P  VTF+SLL ACSH GLV++G  F   M   + I P A+HYAC+VDM GRAG L
Sbjct: 468 QEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQL 527

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            +A  FI  MP+KPD  +W ALLGAC IHG+ EMGK A++ LF   P +   Y+LM+N+Y
Sbjct: 528 DDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMY 587

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM--HPQADTIHGVLAE 629
           +  G+W    +    ++   + K  G S IE+++ V+ F   ++M  HPQ + I   L +
Sbjct: 588 AKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLD 647

Query: 630 LLRLMIDEGYVPNKRFILH 648
           LL  +   GYVP+  F+L 
Sbjct: 648 LLAKIRSLGYVPDYSFVLQ 666



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 187/372 (50%), Gaps = 20/372 (5%)

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           C + L     +     AL+ +Y + G      + F EMR R+V  W A++SGL +N    
Sbjct: 93  CALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAA 152

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDLCIESA 297
           E + LF +M +  +  +++T  S +  C   G +AL     ++ +  K  L  +L + +A
Sbjct: 153 EAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAV--KHGLDDELFVCNA 210

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++D+Y K G +E+  ++F+     D V+   I+ G  Q G    A+++F  M  +G+  D
Sbjct: 211 MIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPD 270

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVF 416
              + ++         +  G+ +H  +++  +     +  N +++MY+K   +E + ++F
Sbjct: 271 VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMF 330

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLV 475
             M  R++VSWN++I  + ++G   +A+ +Y+ M K EG++P   TF+S+L A SH+G +
Sbjct: 331 DSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGAL 390

Query: 476 NKGMEFLKSMTEVHRISPRA----EHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
            +G       T +H +S +     + Y   CV+D+  + G L EA    E+ P +     
Sbjct: 391 QQG-------TRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP-RRSTGP 442

Query: 530 WQALLGACSIHG 541
           W A++    +HG
Sbjct: 443 WNAVISGVGVHG 454



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 173/355 (48%), Gaps = 9/355 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+++  Y K   +    K+FD M  RD V+WN+++SG  + G+       F    + G
Sbjct: 207 VCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSG 266

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSS 209
               D  +   + SA  +       + +HC +   G++  ++  GNA++  Y K     +
Sbjct: 267 VSP-DVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEA 325

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMAC 267
            +++F  M VR+ ++W  +I+G +QN L  E + ++  M  H GL  P   T++S + A 
Sbjct: 326 AQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGL-KPIQGTFVSVLPAY 384

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L AL +G ++H +  K  L  D+ + + ++D+Y+KCG +++A  +FE           
Sbjct: 385 SHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWN 444

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G   +G   +A+ LF +M + GI  D     ++L        +  G+   ++ +++
Sbjct: 445 AVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNM-MQT 503

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
            +   P   +   +++M+ + G L+D+      M  + +S  W +++ A   HGN
Sbjct: 504 AYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGN 558



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 124/260 (47%), Gaps = 6/260 (2%)

Query: 278 QIHGILWKLAL-QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           Q+H    +L L + D     AL+  Y + G V DA++ F+     D  +   +L G  +N
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
               EA+ LF +MV  G+  D   VS+VL +  +     L   +H   +K       FV 
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N +I++Y K G LE+  KVF  M+ R+ V+WNS+I+   + G    A+E++  M+  GV 
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS 268

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEA 514
           P  +T LSL  A +  G +  G      M  V R     +  A   +VDM  +   +  A
Sbjct: 269 PDVLTLLSLASAIAQCGDICGGRSVHCYM--VRRGWDVGDIIAGNAIVDMYAKLSKIEAA 326

Query: 515 RSFIERMPVKPDVLVWQALL 534
           +   + MPV+ D + W  L+
Sbjct: 327 QRMFDSMPVR-DAVSWNTLI 345


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 318/567 (56%), Gaps = 14/567 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +L+  Y KC  + +AVK+       D   W  ++SGF ++ +F      F   +E 
Sbjct: 252 VLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAF-HEMET 310

Query: 150 GFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS- 207
                +  +++ IL+AC  S L+L + K IH  V + G E +V+VGN+L+  Y KC +  
Sbjct: 311 SGVVPNNFTYSGILNACS-SILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMI 369

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               + F  +   NVI+WT++I+G  ++ L EE +K+F  M    + PNS T  + + AC
Sbjct: 370 EDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             +++L + R++HG + K    +D+ + +AL+D Y+  G V+DAW +    +  D ++ T
Sbjct: 430 GTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYT 489

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSL 383
            +     Q G  E A+ +   M K  + +D     + +SA  G+  ++T    GKQ+H  
Sbjct: 490 SLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMET----GKQLHCY 545

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            +KS   S   V+NGL+++Y KCG + D+ + F  +   ++VSWN +I   A +G+   A
Sbjct: 546 SVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSA 605

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L  +E+M+L GVEP  +T L +L+ACSH GLV+ G+++ +SM E H I P+ +HY C+VD
Sbjct: 606 LSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVD 665

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L EA + IE MP KPD L+++ LLGAC +HG+  +G++ A +     P  PA 
Sbjct: 666 LLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAF 725

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L+AN+Y  SGR +   K  + M+E GV K  G SW+E    VH F   D  HPQ   I
Sbjct: 726 YVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKI 785

Query: 624 HGVLAELLRLMIDEG--YVPNKRFILH 648
           H  +  L+    ++G  Y  N+    H
Sbjct: 786 HEKIESLIAQFRNQGIWYQENRALAHH 812



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 236/466 (50%), Gaps = 27/466 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS Y KC  +  A +LFD+MP RD  SW  ++S + + G  +     F   L  G Y
Sbjct: 54  NNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEY 113

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ + +  L +C              LV   G++    +G+ALI  Y KCG +    +
Sbjct: 114 P-NEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYR 172

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M   ++++WT ++S  V+   + + L+L+ +M    + PN  T++  ++A S    
Sbjct: 173 VFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFV-KLLAASSFLG 231

Query: 273 LCEGRQIHG--ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           L  G+ +H   ++W++ L  +L +++AL+DMY KC S+EDA ++ +   E D    T I+
Sbjct: 232 LNYGKLVHAHLMMWRIEL--NLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAII 289

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF Q+    EA+  F +M  +G+  +    S +L       +L LGKQIHS ++ +   
Sbjct: 290 SGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLE 349

Query: 391 SNPFVNNGLINMYSKCGDL-EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           ++  V N L++MY KC ++ ED+++ F  +A  N +SW S+IA F+ HG   ++++++  
Sbjct: 350 NDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGA 409

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-----ISPRAEHYACV--- 501
           M+  GV P   T  ++L AC  +          KS+T+  +     I   A++   V   
Sbjct: 410 MQGVGVRPNSFTLSTILGACGTI----------KSLTQTRKLHGYIIKNNADNDVVVGNA 459

Query: 502 -VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            VD     G++ +A      M  + DV+ + +L    +  G+ EM 
Sbjct: 460 LVDAYAGLGMVDDAWHVTSMMKHR-DVITYTSLATRINQTGNHEMA 504



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 246/489 (50%), Gaps = 12/489 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ ++L+ FY KC   + A ++F+ M   D VSW  MVS F+  G +      + R ++ 
Sbjct: 152 VLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQT 211

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    ++ +F  +L+A     L+   K++H  + +   E  + +  AL+  Y KC S   
Sbjct: 212 GVAP-NEFTFVKLLAASSFLGLNY-GKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIED 269

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             KV       +V  WTA+ISG  Q+  + E +  F +M    + PN+ TY   + ACS 
Sbjct: 270 AVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSS 329

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDGVSMTV 328
           + AL  G+QIH  +    L++D+ + ++L+DMY KC + +EDA + F      + +S T 
Sbjct: 330 ILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTS 389

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ GF+++G EEE++++F  M   G+  +   +S +LG  G   SL   +++H  IIK++
Sbjct: 390 LIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNN 449

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             ++  V N L++ Y+  G ++D+  V S M  R+ +++ S+     + GN   AL +  
Sbjct: 450 ADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIIT 509

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M  + V     +  S L A + + ++  G + L   +    +         +VD+ G+ 
Sbjct: 510 HMNKDDVRMDGFSLASFLSAAAGIPIMETGKQ-LHCYSVKSGLGSWISVSNGLVDLYGKC 568

Query: 509 GLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDSPAPYI 565
           G + +A RSF+E    +PD + W  L+   + +G       A E + LA  +PD     +
Sbjct: 569 GCIHDAHRSFLE--ITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLL 626

Query: 566 LMANIYSCS 574
           ++   Y+CS
Sbjct: 627 VL---YACS 632



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 192/369 (52%), Gaps = 6/369 (1%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +   G++E++ + N L++ Y KC   +  R++F EM  R+V +WT ++S   +   
Sbjct: 37  IHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGN 96

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           +EE L+LF  M +    PN  T  +++ +CS L+    G +   ++ K    S+  + SA
Sbjct: 97  HEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSA 156

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+D YSKCG  ++A+++FE+    D VS T+++  F + G   +A+QL+ +M++ G+   
Sbjct: 157 LIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVA-- 214

Query: 358 PNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           PN  + V  +    + LGL  GK +H+ ++      N  +   L++MY KC  +ED++KV
Sbjct: 215 PNEFTFV-KLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKV 273

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
                  +   W ++I+ F +     +A+  + EM+  GV P + T+  +L+ACS +  +
Sbjct: 274 SKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILAL 333

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           + G + + S   +  +         +VDM  +   +IE      R    P+V+ W +L+ 
Sbjct: 334 DLGKQ-IHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA 392

Query: 536 ACSIHGDSE 544
             S HG  E
Sbjct: 393 GFSEHGLEE 401



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 209/443 (47%), Gaps = 35/443 (7%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           TS +V +N+   S +L+  +      LG  +H+  +          +  + N   + NSL
Sbjct: 310 TSGVVPNNFT-YSGILNACSSILALDLGKQIHSRVV----------MAGLENDVSVGNSL 358

Query: 96  LSFYLKCDQM-RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +  Y+KC  M  +AV+ F  +   + +SW ++++GF  +G  +     F     +G  + 
Sbjct: 359 VDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGV-RP 417

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +  + + IL AC   +    ++ +H  +     + +V VGNAL+ +Y   G       V 
Sbjct: 418 NSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVT 477

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M+ R+VIT+T++ + + Q   +E  L +   M+   +  +  +  S + A +G+  + 
Sbjct: 478 SMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIME 537

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G+Q+H    K  L S + + + L+D+Y KCG + DA + F    E D VS   ++ G A
Sbjct: 538 TGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLA 597

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG------VDTSLGLGKQIHSLIIKSD 388
            NG    A+  F  M  AG+E  P+ ++ +L ++       VD  L   +      ++  
Sbjct: 598 SNGHVSSALSAFEDMRLAGVE--PDQITCLLVLYACSHGGLVDMGLDYFQS-----MREK 650

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALE 445
               P +++   L+++  + G LE+++ V   M  + +++ + +++ A   HGN    + 
Sbjct: 651 HGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGN----IP 706

Query: 446 LYEEMKLEGVE--PTDVTFLSLL 466
           L E M  +G+E  P+D  F  LL
Sbjct: 707 LGEHMARQGLELDPSDPAFYVLL 729



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 147/282 (52%), Gaps = 5/282 (1%)

Query: 255 PNSLTY--LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           P+ + Y  L  +++    +++ +G  IH  + K+  Q D+ + + L+ +Y KC  V +A 
Sbjct: 11  PSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEAR 70

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           Q+F+     D  S T+++  + + G  EEA++LF  M+ +G   +   +S  L       
Sbjct: 71  QLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALR 130

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
               G +  +L+ KS F SNP + + LI+ YSKCG  +++ +VF  M   + VSW  M++
Sbjct: 131 EFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVS 190

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           +F   G+  +AL+LY  M   GV P + TF+ LL A S +GL N G + + +   + RI 
Sbjct: 191 SFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGL-NYG-KLVHAHLMMWRIE 248

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                   +VDM  +    IE    + ++ ++ DV +W A++
Sbjct: 249 LNLVLKTALVDMYCKCQ-SIEDAVKVSKLTLEYDVFLWTAII 289


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 317/563 (56%), Gaps = 18/563 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  + K   +    ++FD +  R  V W  +++ + ++G  D     F   LE GF Q
Sbjct: 194 ALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGF-Q 252

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS---G 210
            DQ + + +LSAC       + + +H L    G E +  V   L+  Y K  +  S    
Sbjct: 253 PDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNA 312

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           R+VF  M   NV+ WTA++SG VQ    + + + LF KM    I PN +TY S + AC+ 
Sbjct: 313 REVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACAN 372

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L     GRQIH    K  L     + +AL+ MY++ GS+E+A   F+   E + VS +  
Sbjct: 373 LGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGN 432

Query: 330 LVGFAQNG----FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           L G  ++     ++ E M+L +     G     +++SA   V G+ T    G+++H+L +
Sbjct: 433 LDGDGRSNTYQDYQIERMELGISTFTFG-----SLISAAASV-GMLTK---GQRLHALSL 483

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+ F S+  + N L++MYS+CG L D+ +VF  M   N +SW SMI+  A+HG   +ALE
Sbjct: 484 KAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALE 543

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+ +M   GV+P DVT++++L ACSH GLV +G E  + M + H + PR EHYAC+VD++
Sbjct: 544 LFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLL 603

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GR+GL+ +A  FI  MP + D LVW+ LLGAC  H + ++G+ AA  +   +P  PAPY+
Sbjct: 604 GRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYV 663

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+ +G W + A+    M++  + KE G+SW+ ++  +H F   D  HPQA+ I+ 
Sbjct: 664 LLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYT 723

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L  L+R +   GYVP+   +LH
Sbjct: 724 KLETLIREIKVMGYVPDTSVVLH 746



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 158/549 (28%), Positives = 264/549 (48%), Gaps = 45/549 (8%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--M 117
            HLG +L    ++T    +           V+ NSLL+ Y KC  +  A  +FD MP  +
Sbjct: 63  IHLGRALQGHLLRTGSLLETD--------AVVANSLLTLYSKCSAVAAARSVFDGMPVGL 114

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS--ACDRSEL-SLV 174
           RD VSW  M S   RNG        F  +LE G   L   +FT+  +  AC  SEL  L 
Sbjct: 115 RDLVSWTAMASCLSRNGAEAEALRLFGETLEEG---LLPNAFTLCAATQACFASELFHLA 171

Query: 175 SKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
              +  LV+  G+   +V+VG ALI  + K G   + R+VF  +  R V+ WT +I+   
Sbjct: 172 GGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYA 231

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           Q+   +E ++LF+ M      P+  T  S + AC+ L +   G+Q+H +  +L L+SD C
Sbjct: 232 QSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSC 291

Query: 294 IESALMDMYSKC---GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE-EAMQLFVKM 349
           +   L+DMY+K     S+ +A ++F    + + ++ T +L G+ Q G ++ + M LF KM
Sbjct: 292 VSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKM 351

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           +  GI  +    S++L           G+QIH+  +KS+      V N L++MY++ G +
Sbjct: 352 LNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSI 411

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--PTDVTFLSLLH 467
           E++   F ++  +N VS++  +    R          Y++ ++E +E   +  TF SL+ 
Sbjct: 412 EEARHAFDQLYEKNMVSFSGNLDGDGRSNT-------YQDYQIERMELGISTFTFGSLIS 464

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           A + VG++ KG        +    S RA   + +V M  R G L++A    + M    +V
Sbjct: 465 AAASVGMLTKGQRLHALSLKAGFGSDRAIGNS-LVSMYSRCGYLVDACQVFDEMN-DHNV 522

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKL-----FLAQPDSPAPYILMANIYSCS--GRWKER 580
           + W +++   + HG      YAA  L      +A    P     +A + +CS  G  KE 
Sbjct: 523 ISWTSMISGLAKHG------YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEG 576

Query: 581 AKAIKRMKE 589
            +  + M++
Sbjct: 577 KEHFRMMQK 585


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 318/575 (55%), Gaps = 17/575 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I N+L++ Y K  ++ ++  L      RD V+WNT++S   +N +      +  R + 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL-REMV 294

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS 207
           L   + D+ + + +L AC   E+    K +H      G  +E   VG+AL+  Y  C   
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--LGLINPNSLTYLSSVM 265
            SGR+VF  M  R +  W A+I+G  QN+  +E L LF+ M    GL+  NS T    V 
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVP 413

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC    A      IHG + K  L  D  +++ LMDMYS+ G ++ A +IF   E+ D V+
Sbjct: 414 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 473

Query: 326 MTVILVGFAQNGFEEEAMQLFVKM------VKAG---IEIDPNMVS--AVLGVFGVDTSL 374
              ++ G+  +   E+A+ L  KM      V  G   + + PN ++   +L      ++L
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH+  IK++  ++  V + L++MY+KCG L+ S KVF ++  +N ++WN +I A+
Sbjct: 534 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 593

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             HGNG +A++L   M ++GV+P +VTF+S+  ACSH G+V++G+     M   + + P 
Sbjct: 594 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           ++HYACVVD++GRAG + EA   +  MP        W +LLGA  IH + E+G+ AA+ L
Sbjct: 654 SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL 713

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P+  + Y+L+ANIYS +G W +  +  + MKE GV KE G SWIE   +VH FV  
Sbjct: 714 IQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAG 773

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HPQ++ + G L  L   M  EGYVP+   +LH
Sbjct: 774 DSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLH 808



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 269/553 (48%), Gaps = 39/553 (7%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DNY     LL   A      LG  +HA   K          Y V + TV  N+L++ Y K
Sbjct: 96  DNYA-FPALLKAVADLQDMELGKQIHAHVYKFG--------YGVDSVTVA-NTLVNLYRK 145

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C       K+FD +  R+ VSWN+++S      +++M    F+  L+     ++ +SFT+
Sbjct: 146 CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTL 202

Query: 162 --ILSACDR---SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
             +++AC      E  ++ K +H      G E    + N L+  Y K G  +S + + G 
Sbjct: 203 VSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGS 261

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW  V+S L QN+   E L+   +M L  + P+  T  S + ACS L+ L  G
Sbjct: 262 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321

Query: 277 RQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +++H    K  +L  +  + SAL+DMY  C  V    ++F+   +        ++ G++Q
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381

Query: 336 NGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           N  ++EA+ LF+ M + AG+  +   ++ V+       +    + IH  ++K     + F
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LE 453
           V N L++MYS+ G ++ ++++F +M  R+ V+WN+MI  +    +   AL L  +M+ LE
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501

Query: 454 ----------GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
                      ++P  +T +++L +C+ +  + KG E + +    + ++      + +VD
Sbjct: 502 RKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVD 560

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSP 561
           M  + G L  +R   +++P K +V+ W  ++ A  +HG+   G+ A +  ++ + Q   P
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN---GQEAIDLLRMMMVQGVKP 616

Query: 562 APYILMANIYSCS 574
                ++   +CS
Sbjct: 617 NEVTFISVFAACS 629



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 152/318 (47%), Gaps = 6/318 (1%)

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  ++   V++ L  E +  +V M +  I P++  + + + A + LQ +  G+QIH  ++
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 285 KLALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           K     D + + + L+++Y KCG     +++F+   E + VS   ++         E A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 344 QLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLI 400
           + F  M+   +E     +VS V     +    GL  GKQ+H+  ++     N F+ N L+
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLV 243

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY K G L  S  +      R+ V+WN+++++  ++    +ALE   EM LEGVEP + 
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T  S+L ACSH+ ++  G E      +   +   +   + +VDM      ++  R   + 
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 521 MPVKPDVLVWQALLGACS 538
           M     + +W A++   S
Sbjct: 364 M-FDRKIGLWNAMIAGYS 380


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 316/585 (54%), Gaps = 27/585 (4%)

Query: 64  PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
           PSLH   IK          + +     + N+LL  Y K   +  A ++F +M  +D V++
Sbjct: 369 PSLHPFAIK----------FGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTY 418

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N M+ G  + G        F      G+    +    ++  +  RS  + V         
Sbjct: 419 NAMMMGCSKEGLHTQALQLFAAMRRAGY---SRHPLHLLQYSHSRSRSTSVLN------- 468

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
                  V V N+L+  Y KC      R++F EM  R+ +++  +I+    NQ     L+
Sbjct: 469 -------VFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLR 521

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF +M     +   L Y + +     L  +  G+QIH  L  L L S+  + +AL+DMYS
Sbjct: 522 LFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYS 581

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG ++ A   F    E   +S T ++ G+ QNG  EEA+QLF  M +AG+  D    S+
Sbjct: 582 KCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSS 641

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           ++        +GLG+Q+HS +I+S + S+ F  + L++MY+KCG L+++++ F  M  RN
Sbjct: 642 IIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERN 701

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           S+SWN++I+A+A +G    A++++E M   G  P  VTFLS+L ACSH GL ++ M++  
Sbjct: 702 SISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFH 761

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            M   + ISP  EHYACV+D +GR G   + +  +  MP K D ++W ++L +C IHG+ 
Sbjct: 762 LMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 821

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E+ + AA+KLF  +P    PY++++NIY+ +G+W++ A   K M++ GV KE+G SW+EI
Sbjct: 822 ELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEI 881

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +++++SF  +D   P  D I   L  L + M  +GY P+    LH
Sbjct: 882 KQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALH 926



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 160/352 (45%), Gaps = 27/352 (7%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N ++++Y   G   + + +F     RN  TWT ++          + L LF  M    + 
Sbjct: 292 NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI 351

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+ +T +++V+   G    C    +H    K  L + + + + L+D Y K G +  A ++
Sbjct: 352 PDRVT-VTTVLNLPG----CTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRV 406

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F    + D V+   +++G ++ G   +A+QLF  M +AG    P               L
Sbjct: 407 FLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHP---------------L 451

Query: 375 GLGKQIHSLIIKSDFTS--NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L +  HS   +S  TS  N FVNN L++ YSKC  L+D  ++F  M  R++VS+N +IA
Sbjct: 452 HLLQYSHS---RSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIA 508

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           A+A +      L L+ EM+  G +   + + ++L     +  V+ G +    +  +   S
Sbjct: 509 AYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLAS 568

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                 A ++DM  + G+L  A+S       K   + W AL+     +G  E
Sbjct: 569 EDLLGNA-LIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITGYVQNGQHE 618



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 27/200 (13%)

Query: 358 PNMVSAVLGVFGVDT-----SLGLGKQI---HSLIIKSDFTSNPFVN----NGLINMYSK 405
           P+  +A  GV G D      +LGL   +   H    ++ F   P  N    N +++ YS 
Sbjct: 241 PSSQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSS 300

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            GDL  +  +F     RN+ +W  M+ A A  G    AL L+  M  EGV P  VT  ++
Sbjct: 301 SGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTV 360

Query: 466 LH--ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERM 521
           L+   C+   L    ++F    T V         + C  ++D   + GLL  AR     M
Sbjct: 361 LNLPGCTVPSLHPFAIKFGLD-THV---------FVCNTLLDAYCKHGLLAAARRVFLEM 410

Query: 522 PVKPDVLVWQALLGACSIHG 541
             K D + + A++  CS  G
Sbjct: 411 HDK-DAVTYNAMMMGCSKEG 429


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 328/602 (54%), Gaps = 11/602 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L   A  G    G  LHA  +++    D            +  SL+  Y KC  + 
Sbjct: 54  LSTVLKGCANTGSLREGKVLHALALRSGCEIDE----------FLGCSLVDMYSKCGTVY 103

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A+K+F  +   D V+W+ M++G  + G        F      G         +++ +A 
Sbjct: 104 DALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTAT 163

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           +  +L    + IH  +   G+E +  V N LI  Y K      G KVF  M   ++++W 
Sbjct: 164 NMGDLRY-GQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWN 222

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A++SG   +Q    G ++F +M L    PN  T++S + +CS L     G+Q+H  + K 
Sbjct: 223 ALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN 282

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
           +   D  + +AL+DMY+K   +EDA   F+     D  S TVI+ G+AQ    E+A++ F
Sbjct: 283 SSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYF 342

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M + GI+ +   +++ L       +L  G+Q+H++ +K+    + FV + L+++Y KC
Sbjct: 343 RQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKC 402

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +E +  +F  +  R+ VSWN++I+ +++HG G KALE +  M  EG+ P + TF+ +L
Sbjct: 403 GCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVL 462

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACS +GLV +G +   SM++++ I+P  EHYAC+VD++GRAG   E + FIE M + P 
Sbjct: 463 SACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPY 522

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            L+W+ +LGAC +HG+ + G+ AA+KLF  +P   + YIL++NI++  GRW +       
Sbjct: 523 SLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRAL 582

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           M   G+ KE G SW+E++ QVH F+  D  HP+   I+  L +L + ++  GYVP    +
Sbjct: 583 MTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVV 642

Query: 647 LH 648
           LH
Sbjct: 643 LH 644



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 235/478 (49%), Gaps = 20/478 (4%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           M  A +LF  MP ++ VSWN +++G+ + G+       F +  E    +  + + + +L 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECE-TKFSKFTLSTVLK 59

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  +      K++H L    G E +  +G +L+  Y KCG+     KVF ++R  +V+ 
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+A+I+GL Q    +E  +LF  M      PN  T  S V   + +  L  G+ IHG + 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCIC 179

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K   +SD  + + L+ MY K   VED  ++FE     D VS   +L GF  +       +
Sbjct: 180 KYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +F +M+  G +  PNM + +  +    + L    GKQ+H+ IIK+    + FV   L++M
Sbjct: 240 IFYQMLLEGFK--PNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDM 297

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+K   LED+   F R+  R+  SW  +I+ +A+     KA++ + +M+ EG++P + T 
Sbjct: 298 YAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARS 516
            S L  CSH+  +  G        ++H ++ +A H+      + +VD+ G+ G +  A +
Sbjct: 358 ASCLSGCSHMATLENG-------RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             + + +  D++ W  ++   S HG  E     A ++ L++   P     +  + +CS
Sbjct: 411 IFKGL-ISRDIVSWNTIISGYSQHGQGEKA-LEAFRMMLSEGIMPDEATFIGVLSACS 466


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/606 (32%), Positives = 334/606 (55%), Gaps = 29/606 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S  L ISAK G  H G  LHA  IK              N   + N +L  Y+KC +  +
Sbjct: 77  SHALKISAKLGFLHGGKQLHAHVIK----------LGXCNLLSLQNQVLHVYVKCKEFND 126

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLR-NGEFDMGFGFFKRSLELGFYQLDQ------ASFT 160
             K+FD+MP+++ VSWNT++ G +  N +F +        + LGF+   Q      A   
Sbjct: 127 VCKMFDEMPLKNVVSWNTLICGVVEGNCKFAL--------VRLGFHCFRQMVLEMMAPNC 178

Query: 161 IILSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           I L+   R+ + L    + + +HC +   G++    VG+AL+ SY K G     +  F E
Sbjct: 179 ITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDE 238

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  R+++ W  ++S    N +  +   +F  M L  +  +  T+ S + +C  L +   G
Sbjct: 239 VSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLG 298

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+HG++ +L+   D+ + SAL+DMYSK  ++EDA + F+     + VS T + VG+ Q+
Sbjct: 299 KQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQH 358

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  +E M+L  +M++     D   ++++L   G  ++     Q+H+ ++++ F +   + 
Sbjct: 359 GDGKEXMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIA 418

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L++ YSKCG +  + + FS +A  + +SW S++ A+A HG   + ++++E++    V 
Sbjct: 419 NALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVR 478

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P  V FL +L AC+H G V +G+ +   M  V++I P +EHY  ++D++GRAG L EA +
Sbjct: 479 PDKVAFLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVN 538

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            +  MPV+P      A LGAC ++ +  + ++A+EKLF+ +P+ P  Y LM+N+Y+  G 
Sbjct: 539 LLTSMPVEPRSDTLGAFLGACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGH 598

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W + A+  K M+E    K  G SW+E   +VH+FV  DK HP+A  ++G+L  L+RLM +
Sbjct: 599 WFDVARVRKLMRERCDFKVPGCSWMETAGEVHTFVSRDKTHPRAVQVYGMLDLLVRLMKE 658

Query: 637 EGYVPN 642
           E  V +
Sbjct: 659 EDDVSD 664


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 323/605 (53%), Gaps = 25/605 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS S+ +   H G  +H   +K+    +   V          +SL+  Y+KC  ++
Sbjct: 215 VSSILSCSSLQSLTH-GREIHGVVVKSGLDVEEYLV----------SSLIEMYMKCGSIK 263

Query: 107 NAVKLFD-----DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           NA  +F+     D   R+ V WN M+SG++ NG F      F + +  G  + D ++   
Sbjct: 264 NAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGI-KPDYSTMVS 322

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           + S C  S      K IH L++  G +  + V  AL+  Y KCG   +G K+F   +  N
Sbjct: 323 LFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHN 382

Query: 222 VITWTAVISGLVQNQLYEEGLKLF--VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +I W+AVIS   Q+    + L+LF   KM  GL +   L  ++ + ACS L    EG QI
Sbjct: 383 LIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGIL--VAVLRACSSLTLKPEGMQI 440

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG+  K+   SD+ + SAL+D+Y+KC  +  + ++F    + D VS   ++ G+AQ+   
Sbjct: 441 HGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECA 500

Query: 340 EEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
           +EA++ F  M     EI PN V+   +L V    + + L K++H  +I+    S   V+N
Sbjct: 501 DEALKAFRDMQLE--EIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSN 558

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI  Y+KCGD+  S+  F +M  RN VSWNS+I     H    + + L+++M   G++P
Sbjct: 559 SLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKP 618

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             VTF ++L ACSH G V++G ++ KSM E   + P+ E Y C+VD++GRAG L +A   
Sbjct: 619 DHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDL 678

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           I  MP  PD  +W +LLG+C  HGD  + +  A  +F   P S    +L+AN+Y   G+ 
Sbjct: 679 IMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKG 738

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           +E +K    +K+MG+ K+ G SWIE++   H F+  D+ H Q+D I+  +  L   +   
Sbjct: 739 REGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIKRA 798

Query: 638 GYVPN 642
           GY+P 
Sbjct: 799 GYIPQ 803



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 295/613 (48%), Gaps = 41/613 (6%)

Query: 7   FLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDIS----------RLLSISAK 56
           F K N N P       P  TKI    + S +  V+  Y +            ++L    K
Sbjct: 47  FQKFNYN-PIQKWSSKPLSTKIQTFVSVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVK 105

Query: 57  EGHFHLGPSLHASFIKTFEPFDNQNVYN------VPNATVIWNSLLSFYLKCDQMRNAVK 110
              F   P L  +F    + +  + ++       V +   + NSLL+ Y KC  + +AV+
Sbjct: 106 VEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQ 165

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL-ELGFYQLDQASFTIILSACDRS 169
           +F+ MP  D VSWNTM+SGF ++ ++     FF+  + E G Y    A  + ILS     
Sbjct: 166 MFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQ 225

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-----VRNVIT 224
            L+   + IH +V   G + E  + ++LI  Y KCGS  +   +F  +       RN + 
Sbjct: 226 SLTH-GREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVI 284

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  +ISG V N  + + L LF+KM +  I P+  T +S    CS    +  G+QIHG+++
Sbjct: 285 WNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIF 344

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K  L++++ +E+AL+DMY KCG +    +IF  ++  + +  + ++   AQ+G   +A++
Sbjct: 345 KFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALE 404

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF +        D  ++ AVL      T    G QIH L  K  F S+ FV + L+++Y+
Sbjct: 405 LFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYA 464

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KC D+  S KVF R++ ++ VSWN++I+ +A+     +AL+ + +M+LE + P  VT   
Sbjct: 465 KCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIAC 524

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFI 518
           +L  C+H+ +    M   K   EVH    R    + V      +    + G +  +    
Sbjct: 525 ILSVCAHLSV----MTLCK---EVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTF 577

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GR 576
           E+MP + DV  W +++    +H  ++      +K+ +A    P      A + +CS  GR
Sbjct: 578 EKMPERNDV-SWNSIILGMGMHSRTDEMIVLFDKM-VASGIKPDHVTFTAILSACSHAGR 635

Query: 577 WKERAKAIKRMKE 589
             E  K  K M E
Sbjct: 636 VDEGCKYFKSMVE 648


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 209/633 (33%), Positives = 332/633 (52%), Gaps = 86/633 (13%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +++S Y     +  A  +F++ P  MRDTV +N M++GF  N +       F +    G
Sbjct: 84  TTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 151 FYQLDQASFTIILSACDRSELSLVSK------MIHCLVYLCGYEEEVTVGNALITSYFKC 204
           F + D  ++  +L+      L+LV          H      G     +V NAL++ Y +C
Sbjct: 144 F-KPDDFTYASVLAG-----LALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRC 197

Query: 205 GSSSS----GRKVFGEMRVRNVITWTAVISGLVQNQ------------------------ 236
            SS S     RKVF ++  ++  +WT +++G V+N                         
Sbjct: 198 ASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAM 257

Query: 237 --------LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
                   LY+E L++  +M    I  +  TY S + AC+  + L  G+Q+H  + +   
Sbjct: 258 ISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR--- 314

Query: 289 QSDLCI--ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF------------- 333
           + D     +++L+ +Y KCG   +A  IFE     D VS   +L G+             
Sbjct: 315 REDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIF 374

Query: 334 ------------------AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                             A+NGF EE ++LF  M + G E      S  +    V  +  
Sbjct: 375 KEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYC 434

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G+Q H+ ++K  F S+    N LI MY+KCG +E++ +VF  M   +SVSWN++IAA  
Sbjct: 435 NGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALG 494

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           +HG+G +A+++YEEM  +G+ P  +TFL++L ACSH GLV++G ++  SM  V+RI P A
Sbjct: 495 QHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGA 554

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           +HYA ++D++ R+G   EA S IE +P KP   +W+ALL  C +HG+ E+G  AA+KLF 
Sbjct: 555 DHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             P+    Y+L++N+Y+ +G+W+E A+  K M++ GV KE   SWIE+E QVH+F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 616 MHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            HP+A+ ++  L +L + M   GYVP+  F+LH
Sbjct: 675 SHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLH 707



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 195/421 (46%), Gaps = 73/421 (17%)

Query: 89  TVIWNSLLSFYLKCDQ----MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG----- 139
           T + N+L+S Y +C      + +A K+FDD+P +D  SW TM++G+++NG FD+G     
Sbjct: 184 TSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLK 243

Query: 140 --------------------FGFFKRSLEL------GFYQLDQASFTIILSACDRSELSL 173
                                G ++ +LE+         +LD+ ++  ++ AC  + L  
Sbjct: 244 GMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQ 303

Query: 174 VSKMIHCLV------------------YLCGY------------EEEVTVGNALITSYFK 203
           + K +H  V                  Y CG              +++   NAL++ Y  
Sbjct: 304 LGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
            G     + +F EM+ +N+++W  +ISGL +N   EEGLKLF  M      P    +  +
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + +C+ L A C G+Q H  L K+   S L   +AL+ MY+KCG VE+A Q+F     LD 
Sbjct: 424 IKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDS 483

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   ++    Q+G   EA+ ++ +M+K GI   P+ ++  L V    +  GL  Q    
Sbjct: 484 VSWNALIAALGQHGHGVEAVDVYEEMLKKGIR--PDRIT-FLTVLTACSHAGLVDQGRKY 540

Query: 384 I--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHG 438
              +++ +   P  ++   LI++  + G   ++  +   +  + +   W ++++    HG
Sbjct: 541 FNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHG 600

Query: 439 N 439
           N
Sbjct: 601 N 601



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 85/360 (23%)

Query: 252 LINPNSLTYLSSVMACSGLQ--ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
           L+   +  Y +++  C  L+  +L   R +HG +     Q    I + L+D+Y K   ++
Sbjct: 7   LVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELD 66

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNG--------FEE--------------------- 340
            A Q+F+   E D ++ T ++ G+  +G        FEE                     
Sbjct: 67  YARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHN 126

Query: 341 ----EAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
                A+ LF KM   G + D    ++VL G+  V        Q H+  +KS       V
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSV 186

Query: 396 NNGLINMYSKCGD----LEDSIKVFSRMAPRNSVSWNSMIAAFARHG------------- 438
           +N L+++YS+C      L  + KVF  +  ++  SW +M+  + ++G             
Sbjct: 187 SNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMD 246

Query: 439 ------------NGF-------KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
                       +G+       +ALE+   M   G+E  + T+ S++ AC++  L+  G 
Sbjct: 247 ENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG- 305

Query: 480 EFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                  +VH    R E ++      +V +  + G   EAR+  E+MP K D++ W ALL
Sbjct: 306 ------KQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALL 358



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 133/328 (40%), Gaps = 84/328 (25%)

Query: 354 IEIDPNMVSAVLGVFGVD---------TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           ++ +P++V A+   +  +         TSL L + +H  II   F  +  + N LI++Y 
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYC 60

Query: 405 KCGDLEDSIKVFSRMAP---------------------------------RNSVSWNSMI 431
           K  +L+ + ++F  ++                                  R++V +N+MI
Sbjct: 61  KSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMI 120

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS------------HVGLVNKGM 479
             F+ + +G+ A+ L+ +MK EG +P D T+ S+L   +            H   +  G 
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGA 180

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAG----LLIEARSFIERMPVKPDVLVWQALLG 535
            ++ S++              +V +  R      LL  AR   + +P K D   W  ++ 
Sbjct: 181 GYVTSVSNA------------LVSVYSRCASSPSLLHSARKVFDDIPEK-DERSWTTMMT 227

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
               +G  ++GK   +   + +      Y  M + Y   G ++E  + ++RM   G++ +
Sbjct: 228 GYVKNGCFDLGKELLKG--MDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELD 285

Query: 596 -----------TGISWIEIEKQVHSFVV 612
                           +++ KQVH++V+
Sbjct: 286 EFTYPSVIRACANARLLQLGKQVHAYVL 313


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/526 (34%), Positives = 294/526 (55%), Gaps = 6/526 (1%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           NT+V  + ++   D+    FK   E+     D  +F  +L A    +  ++ + IH  V 
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPEI-----DSFTFAAVLCANIGLDDIVLGQQIHSFVI 237

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
              +   V V NAL+  Y K  S    RK+F EM  ++ +++  +ISG   +  ++    
Sbjct: 238 KTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFD 297

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF ++     +     + + +   S       GRQIH         S++ + ++L+DMY+
Sbjct: 298 LFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYA 357

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG  E+A  IF        V  T ++  + Q GF EE +QLF KM +A +  D    ++
Sbjct: 358 KCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFAS 417

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           +L       SL LGKQ+HS IIKS F SN F  + L+++Y+KCG ++D+++ F  M  RN
Sbjct: 418 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRN 477

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            VSWN+MI+A+A++G     L+ ++EM L G++P  V+FL +L ACSH GLV +G+    
Sbjct: 478 IVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFN 537

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           SMT+++++ PR EHYA VVDM+ R+G   EA   +  MP+ PD ++W ++L AC IH + 
Sbjct: 538 SMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQ 597

Query: 544 EMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           E+ + AA++LF + +    APY+ M+NIY+ +G+W+  +K  K M++ GV K    SW+E
Sbjct: 598 ELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVE 657

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           I+ + H F  +D+ HPQ + I   +  L + M + GY P+    LH
Sbjct: 658 IKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALH 703



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 269/554 (48%), Gaps = 78/554 (14%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H+  IKT        V+NV     + N+LL FY K D + +A KLFD+MP +D V
Sbjct: 228 LGQQIHSFVIKT------NFVWNV----FVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 277

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           S+N ++SG+  +G+    F  F R L+   +   Q  F  +LS    +    + + IH  
Sbjct: 278 SYNVIISGYAWDGKHKYAFDLF-RELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQ 336

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
             +   + E+ VGN+L+  Y KCG       +F  +  R+ + WTA+IS  VQ   YEEG
Sbjct: 337 TIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF KM    +  +  T+ S + A + + +L  G+Q+H  + K    S++   SAL+D+
Sbjct: 397 LQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDV 456

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KCGS++DA Q F+   + + VS   ++  +AQNG  E  ++ F +MV +G++  P+ V
Sbjct: 457 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQ--PDSV 514

Query: 362 SAVLGVFGVDTSLGLGKQ----IHSL--IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           S  LGV    +  GL ++     +S+  I K D     + +  +++M  + G   ++ K+
Sbjct: 515 S-FLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYAS--VVDMLCRSGRFNEAEKL 571

Query: 416 FSRMA-PRNSVSWNSMIAAFARHGNG----FKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            + M    + + W+S++ A   H N       A +L+   +L    P     +S ++A +
Sbjct: 572 MAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAP--YVNMSNIYAAA 629

Query: 471 ---------HVGLVNKGMEFLKSMT------EVH------RISPRAEHYACVVDMVGRAG 509
                    H  + ++G++ L + +      E H      R  P+ E     +DM+ +  
Sbjct: 630 GQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKT- 688

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG-----KYAAEKLFLA-----QPD 559
                   +E +  KPD         +C++H + E       KY +E+L +A      P+
Sbjct: 689 --------MEELGYKPDT--------SCALHNEDEKFKVESLKYHSERLAIAFALISTPE 732

Query: 560 SPAPYILMANIYSC 573
             +P ++M N+ +C
Sbjct: 733 G-SPILVMKNLRAC 745



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/544 (24%), Positives = 249/544 (45%), Gaps = 61/544 (11%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPN----------- 87
            L N   ++ L S+ + +   ++  ++ A  +KT F+P  +++ + V N           
Sbjct: 8   ALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQAR 67

Query: 88  ---------ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
                     TV  N ++S Y+K   +  A KLFD M  R  V+W  ++ G+ +  +F  
Sbjct: 68  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE 127

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
            F  F +    G  + D  +F  +LS C+  E+      +   +   GY+  + VGN L+
Sbjct: 128 AFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLV 186

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
            SY K        ++F EM   +  T+ AV+   +                         
Sbjct: 187 DSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANI------------------------- 221

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
                     GL  +  G+QIH  + K     ++ + +AL+D YSK  SV DA ++F+  
Sbjct: 222 ----------GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEM 271

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            E DGVS  VI+ G+A +G  + A  LF ++     +      + +L +        +G+
Sbjct: 272 PEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGR 331

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           QIH+  I +   S   V N L++MY+KCG  E++  +F+ +  R++V W +MI+A+ + G
Sbjct: 332 QIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKG 391

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              + L+L+ +M+   V     TF SLL A + +  ++ G + L S              
Sbjct: 392 FYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQ-LHSFIIKSGFMSNVFSG 450

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA-- 556
           + ++D+  + G + +A    + MP + +++ W A++ A + +G++E    + +++ L+  
Sbjct: 451 SALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL 509

Query: 557 QPDS 560
           QPDS
Sbjct: 510 QPDS 513



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSF 98
           V+ +    + LL  SA      LG  LH+  IK+ F      NV++        ++LL  
Sbjct: 408 VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFM----SNVFS-------GSALLDV 456

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  +++AV+ F +MP R+ VSWN M+S + +NGE +     FK  +  G  Q D  S
Sbjct: 457 YAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGL-QPDSVS 515

Query: 159 FTIILSACDRSEL 171
           F  +LSAC  S L
Sbjct: 516 FLGVLSACSHSGL 528


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 318/575 (55%), Gaps = 17/575 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I N+L++ Y K  ++ ++  L      RD V+WNT++S   +N +      +  R + 
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYL-REMV 207

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSS 207
           L   + D+ + + +L AC   E+    K +H      G  +E   VG+AL+  Y  C   
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 267

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH--LGLINPNSLTYLSSVM 265
            SGR+VF  M  R +  W A+I+G  QN+  +E L LF+ M    GL+  NS T    V 
Sbjct: 268 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLL-ANSTTMAGVVP 326

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC    A      IHG + K  L  D  +++ LMDMYS+ G ++ A +IF   E+ D V+
Sbjct: 327 ACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVT 386

Query: 326 MTVILVGFAQNGFEEEAMQLFVKM------VKAG---IEIDPNMVS--AVLGVFGVDTSL 374
              ++ G+  +   E+A+ L  KM      V  G   + + PN ++   +L      ++L
Sbjct: 387 WNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 446

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH+  IK++  ++  V + L++MY+KCG L+ S KVF ++  +N ++WN +I A+
Sbjct: 447 AKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAY 506

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             HGNG +A++L   M ++GV+P +VTF+S+  ACSH G+V++G+     M   + + P 
Sbjct: 507 GMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 566

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           ++HYACVVD++GRAG + EA   +  MP        W +LLGA  IH + E+G+ AA+ L
Sbjct: 567 SDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL 626

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P+  + Y+L+ANIYS +G W +  +  + MKE GV KE G SWIE   +VH FV  
Sbjct: 627 IQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAG 686

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HPQ++ + G L  L   M  EGYVP+   +LH
Sbjct: 687 DSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLH 721



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 144/553 (26%), Positives = 269/553 (48%), Gaps = 39/553 (7%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DNY     LL   A      LG  +HA   K          Y V + TV  N+L++ Y K
Sbjct: 9   DNYA-FPALLKAVADLQDMELGKQIHAHVYKFG--------YGVDSVTVA-NTLVNLYRK 58

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C       K+FD +  R+ VSWN+++S      +++M    F+  L+     ++ +SFT+
Sbjct: 59  CGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTL 115

Query: 162 --ILSACDR---SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
             +++AC      E  ++ K +H      G E    + N L+  Y K G  +S + + G 
Sbjct: 116 VSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGS 174

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW  V+S L QN+   E L+   +M L  + P+  T  S + ACS L+ L  G
Sbjct: 175 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234

Query: 277 RQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +++H    K  +L  +  + SAL+DMY  C  V    ++F+   +        ++ G++Q
Sbjct: 235 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 294

Query: 336 NGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           N  ++EA+ LF+ M + AG+  +   ++ V+       +    + IH  ++K     + F
Sbjct: 295 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 354

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LE 453
           V N L++MYS+ G ++ ++++F +M  R+ V+WN+MI  +    +   AL L  +M+ LE
Sbjct: 355 VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 414

Query: 454 ----------GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
                      ++P  +T +++L +C+ +  + KG E + +    + ++      + +VD
Sbjct: 415 RKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKE-IHAYAIKNNLATDVAVGSALVD 473

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSP 561
           M  + G L  +R   +++P K +V+ W  ++ A  +HG+   G+ A +  ++ + Q   P
Sbjct: 474 MYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN---GQEAIDLLRMMMVQGVKP 529

Query: 562 APYILMANIYSCS 574
                ++   +CS
Sbjct: 530 NEVTFISVFAACS 542



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 155/327 (47%), Gaps = 13/327 (3%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD-LCIESALMDMYSKCGSVEDA 311
           I P++  + + + A + LQ +  G+QIH  ++K     D + + + L+++Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGV 370
           +++F+   E + VS   ++         E A++ F  M+   +E     +VS V     +
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 371 DTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
               GL  GKQ+H+  ++     N F+ N L+ MY K G L  S  +      R+ V+WN
Sbjct: 126 PMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           +++++  ++    +ALE   EM LEGVEP + T  S+L ACSH+ ++  G E      + 
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
             +   +   + +VDM      ++  R   + M     + +W A++   S    +E  K 
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAGYS---QNEHDKE 300

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSG 575
           A   LF+   +S     L+AN  + +G
Sbjct: 301 AL-LLFIGMEESAG---LLANSTTMAG 323



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 11/194 (5%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCG 407
           M+  GI+ D     A+L        + LGKQIH+ + K  +  +   V N L+N+Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           D     KVF R++ RN VSWNS+I++         ALE +  M  E VEP+  T +S++ 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMP 522
           ACS++ +     E L    +VH    R           +V M G+ G L  ++  +    
Sbjct: 121 ACSNLPMP----EGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 523 VKPDVLVWQALLGA 536
            + D++ W  +L +
Sbjct: 177 GR-DLVTWNTVLSS 189


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 328/595 (55%), Gaps = 20/595 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +   L  +A  G   LG  LH+  +K        NV++         +LL  Y KC
Sbjct: 100 NTFALGSALRSAAAMGCSALGTQLHSLAVKAGLA---DNVFSA-------TALLHMYAKC 149

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            + R+A +LFD MP R+TVSWN +V+G++ +G+       F      GF   D+A+F  +
Sbjct: 150 GRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLP-DEATFAAL 208

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-N 221
           L+  + S   L+ + +H  +   G    + V NA IT+Y +CG+ ++ R++F E+  R +
Sbjct: 209 LTVVNDSTCFLMHQ-LHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSD 267

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +I+W A++     + +  E ++ F  M     + P+  ++ S + AC+  +    G  IH
Sbjct: 268 LISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDH-GGTVIH 326

Query: 281 GILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           G++ K   +    + +AL+ MY++      +EDA++ F+     D VS   +L G++Q+G
Sbjct: 327 GLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHG 386

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              +A++ F  M    I  D    SA L        L LG+QIH L+I+S F SN FV++
Sbjct: 387 LSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSS 446

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI MYSK G L+D++K F      +SV WNSM+  +A+HG       L+ +M LE   P
Sbjct: 447 SLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQM-LELKVP 505

Query: 458 TD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
            D +TF+ L+ ACSH GLV++G E L +M   + I  R EHYAC +D+ GRAG L +A+ 
Sbjct: 506 LDHITFVGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKE 565

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            I+ MP +PD +VW  LLGAC +HG+ E+    A  L  A+P   + Y+L++N+YS  G 
Sbjct: 566 LIDSMPFEPDAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGM 625

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           W +RA   K MK  G+ K  G SWIE++ +VHSF  +D  HP+ D I+ +L+ LL
Sbjct: 626 WSDRAIVQKEMKNKGLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEIYEMLSLLL 680



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 226/470 (48%), Gaps = 33/470 (7%)

Query: 92  WNSLLSFY-LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           WN LL+ Y +    +  A +LFD++P  D  SWN++++  +  G         +   E G
Sbjct: 37  WNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERG 96

Query: 151 FYQLDQASFTIILSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
                 A+ T  L +  RS  ++    +   +H L    G  + V    AL+  Y KCG 
Sbjct: 97  L-----AANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGR 151

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           +    ++F  M  RN ++W A+++G V++      ++LFV+M      P+  T+ + +  
Sbjct: 152 TRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTV 211

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVS 325
            +         Q+HG + K      L + +A +  YS+CG++ ++ +IF E  +  D +S
Sbjct: 212 VNDSTCFLM-HQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLIS 270

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              +L  +A +G E EAM+ F  M++A G++ D    ++++         G G  IH L+
Sbjct: 271 WNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHG-GTVIHGLV 329

Query: 385 IKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
            K+ F     V N LI MY++  +   +ED+ K F  +  +++VSWNSM+  +++HG   
Sbjct: 330 SKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSA 389

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--- 498
            AL  +  M+ E +   +  F + L +CS + L+  G        ++H +  R+      
Sbjct: 390 DALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLG-------RQIHGLVIRSGFASNN 442

Query: 499 ---ACVVDMVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              + ++ M  ++G+L +A +SF E    K   + W +++   + HG ++
Sbjct: 443 FVSSSLIFMYSKSGILDDAMKSFEE--ADKSSSVPWNSMMFGYAQHGKAQ 490



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 127/274 (46%), Gaps = 22/274 (8%)

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+    LD  S   +L      G    A +L   M + G+  +   + + L     
Sbjct: 54  ARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRSAAA 113

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
                LG Q+HSL +K+    N F    L++MY+KCG   D+ ++F  M  RN+VSWN++
Sbjct: 114 MGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNAL 173

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +A +   G    A++L+ EM+ EG  P + TF +LL       +VN    FL     +H+
Sbjct: 174 VAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALL------TVVNDSTCFL-----MHQ 222

Query: 491 ISPRAEHYACVVDMV---------GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +  +   Y   + ++          + G L  +R   + +  + D++ W A+LGA + HG
Sbjct: 223 LHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHG 282

Query: 542 -DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
            + E  ++ A  +  A    P  Y   + I +C+
Sbjct: 283 MEHEAMRFFA-SMMRASGVQPDMYSFTSIISACA 315


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 206/580 (35%), Positives = 317/580 (54%), Gaps = 25/580 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y K  ++ +A  L      RD V+WN+M+S F +N  F M    F R + L   
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERF-MEALMFLRLMVLEGV 212

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGR 211
           + D  +F  +L AC   +L    K IH          E   VG+AL+  Y  CG   SGR
Sbjct: 213 KPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGR 272

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGL 270
            VF  +  R +  W A+I+G  Q++  E+ L LF++M     +  N+ T  S V A    
Sbjct: 273 LVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRC 332

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + +     IHG + K  L+++  +++AL+DMYS+ G ++ + +IF+  E+ D VS   I+
Sbjct: 333 EGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392

Query: 331 VGFAQNGFEEEAMQLFVKMVK--------------AGIEIDPNMVSAVLGVFGVDT--SL 374
             +   G   +A+ L  +M +                +   PN ++ +  + G  +  +L
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH+  I++   S   V + L++MY+KCG L  + +VF +M  RN ++WN +I A+
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512

Query: 435 ARHGNGFKALELYEEMKLEG-----VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
             HG G ++LEL+E+M  EG     V+PT+VTF++L  +CSH G+V++G+     M   H
Sbjct: 513 GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEH 572

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD-VLVWQALLGACSIHGDSEMGKY 548
            I P  +HYAC+VD+VGRAG + EA   +  MP   D V  W +LLGAC I+ + E+G+ 
Sbjct: 573 GIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEI 632

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AAE L   QPD  + Y+L++NIYS +G W +     +RMK MGV KE G SWIE   +VH
Sbjct: 633 AAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVH 692

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F+  D  HPQ++ +H  L  L   +  EGYVP+   +LH
Sbjct: 693 KFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLH 732



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 147/527 (27%), Positives = 261/527 (49%), Gaps = 46/527 (8%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DN+   + L +++  +   +LG  +HA   K          Y   ++  I N+L++ Y K
Sbjct: 9   DNFAFPAVLKAVAGIQ-ELYLGKQIHAHVFKFG--------YGSFSSVTIDNTLVNMYGK 59

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  + +A K+FD +  RD VSWN+++S   R  E+++    F+  L  GF   + +SFT+
Sbjct: 60  CGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGF---EPSSFTL 116

Query: 162 ILSACDRSELS-----LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +  A   S L       + K IH   +  G+    +  NAL+  Y K G     + +   
Sbjct: 117 VSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVL 175

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW ++IS   QN+ + E L     M L  + P+ +T+ S + ACS L  L  G
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235

Query: 277 RQIHGILWKLALQSDLCIE-----SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           ++IH      AL++D  IE     SAL+DMY  CG VE    +F+   +        ++ 
Sbjct: 236 KEIHA----YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIA 291

Query: 332 GFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           G+AQ+  +E+A+ LF++M   AG+  +   +S+++  +     +   + IH  +IK    
Sbjct: 292 GYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLE 351

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +N ++ N LI+MYS+ GD++ S ++F  M  R+ VSWN++I ++   G    AL L  EM
Sbjct: 352 TNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEM 411

Query: 451 ----------------KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
                           K    +P  +T +++L  C+ +  + KG E + +    + ++ +
Sbjct: 412 QRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKE-IHAYAIRNLLASQ 470

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               + +VDM  + G L  AR   ++MP++ +V+ W  ++ A  +HG
Sbjct: 471 VTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHG 516



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 193/401 (48%), Gaps = 20/401 (4%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE--EVTVGNALITSYFKCGSSSSGRK 212
           D  +F  +L A    +   + K IH  V+  GY     VT+ N L+  Y KCG      K
Sbjct: 9   DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ- 271
           VF  +  R+ ++W ++IS L + + +E  +K F  M +    P+S T +S  +ACS L+ 
Sbjct: 69  VFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRK 128

Query: 272 --ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  G+QIHG  ++          +ALM MY+K G ++DA  +    E+ D V+   +
Sbjct: 129 RDGLWLGKQIHGCCFRKGHWRTFS-NNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSM 187

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-D 388
           +  F+QN    EA+     MV  G++ D    ++VL        L  GK+IH+  +++ D
Sbjct: 188 ISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDD 247

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N FV + L++MY  CG +E    VF  +  R    WN+MIA +A+  +  KAL L+ 
Sbjct: 248 VIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFI 307

Query: 449 EMK-LEGVEPTDVTFLSLLHA---CSHVGLVNKGME--FLKSMTEVHRISPRAEHYACVV 502
           EM+   G+     T  S++ A   C  +    +G+    +K   E +R    A     ++
Sbjct: 308 EMEAAAGLYSNATTMSSIVPAYVRCEGISR-KEGIHGYVIKRGLETNRYLQNA-----LI 361

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           DM  R G +  ++   + M  + D++ W  ++ +  I G S
Sbjct: 362 DMYSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGRS 401



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 7/288 (2%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS--DLCIESALMDMYSKCGSVEDA 311
           +P++  + + + A +G+Q L  G+QIH  ++K    S   + I++ L++MY KCG + DA
Sbjct: 7   SPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDA 66

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGV 370
           +++F+   E D VS   I+    +    E A++ F  M+  G E     +VS  L    +
Sbjct: 67  YKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL 126

Query: 371 DTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
               GL  GKQIH    +       F NN L+ MY+K G L+D+  +      R+ V+WN
Sbjct: 127 RKRDGLWLGKQIHGCCFRKGHWRT-FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           SMI++F+++    +AL     M LEGV+P  VTF S+L ACSH+ L+  G E        
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRT 245

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             +   +   + +VDM    G +   R   + + +   + +W A++  
Sbjct: 246 DDVIENSFVGSALVDMYCNCGQVESGRLVFDSV-LDRKIGLWNAMIAG 292



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 12/197 (6%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS--NPFVNNGLINMYSKC 406
           M+ +G   D     AVL        L LGKQIH+ + K  + S  +  ++N L+NMY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G L D+ KVF R+  R+ VSWNS+I+A  R      A++ +  M +EG EP+  T +S+ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERM 521
            ACS++    +  + L    ++H    R  H+       ++ M  + G L +A+S +   
Sbjct: 121 LACSNL----RKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLF 176

Query: 522 PVKPDVLVWQALLGACS 538
             + D++ W +++ + S
Sbjct: 177 EDR-DLVTWNSMISSFS 192



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 38/186 (20%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  I+            + +   + ++L+  Y KC  +  A ++FD MP+R+ ++
Sbjct: 455 GKEIHAYAIRNL----------LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVIT 504

Query: 123 WNTMVSGFLRNGEFDMGFGFFK----RSLELGFYQLDQASFTIILSACDRS-----ELSL 173
           WN ++  +  +G+       F+       + G  +  + +F  + ++C  S      LSL
Sbjct: 505 WNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSL 564

Query: 174 VSKMIH------------CLVYLCG----YEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
             KM +            C+V L G     EE   + N + + + K G+ SS   + G  
Sbjct: 565 FHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSS---LLGAC 621

Query: 218 RVRNVI 223
           R+ + I
Sbjct: 622 RIYHNI 627


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 180/504 (35%), Positives = 300/504 (59%), Gaps = 13/504 (2%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC------GYEEEVTVGNALITS 200
           LE GF+ +  +++  +++AC      +  K I  +  LC      G+E +  + N ++  
Sbjct: 124 LEDGFH-VGYSTYDALINAC------IGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLM 176

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           + KCG      ++F EM  RN ++W  +ISG V +  Y E  +LF+ M     +    T+
Sbjct: 177 HVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTF 236

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            + + A +GL+ +  GRQ+H    K  L  D+ +  AL+DMYSKCGS+EDA  +F+   +
Sbjct: 237 ATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPD 296

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
              V    I+ G+A +G+ EEA+ L+ +M  +G+++D    S ++ +     S+   KQ+
Sbjct: 297 KTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQV 356

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ ++++ F  +   N  L++ YSK G ++D+  VF RM+ RN +SWN++IA +  HG+G
Sbjct: 357 HASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHG 416

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +A++++E+M  EG+ P  VTFL++L ACS  GL  +G E  +SMT  H++ PRA H+AC
Sbjct: 417 EEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFAC 476

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +++++GR GLL EA + I + P +P   +W ALL AC +HG+ E+GK+AAEKL+  +P+ 
Sbjct: 477 MIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEK 536

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
            + YI++ NIY+ SG+ KE A   + +K  G+      SWIE+  Q H+F+  DK H Q 
Sbjct: 537 LSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQI 596

Query: 621 DTIHGVLAELLRLMIDEGYVPNKR 644
           + + G + EL+  +   GYVP ++
Sbjct: 597 EKVVGKVDELMLNISKLGYVPEEQ 620



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 223/472 (47%), Gaps = 29/472 (6%)

Query: 34  SSTSKLVL-DNYVDISRLLSISAKEGHFHLGPSLHASFI------KTFEPFDNQNVYNVP 86
           S   KLVL   Y D   +  I   E  FH+G S + + I      K+         Y V 
Sbjct: 101 SQIEKLVLCKKYRDALEMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVD 160

Query: 87  NA----TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           N       + N +L  ++KC  M +A +LFD+MP R+ VSW T++SG++ +G +   F  
Sbjct: 161 NGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRL 220

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F    E  FY     +F  ++ A    E+    + +H      G  +++ V  ALI  Y 
Sbjct: 221 FILMRE-EFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYS 279

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCGS      VF EM  + ++ W ++I+G   +   EE L L+ +M    +  +  T+  
Sbjct: 280 KCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSI 339

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +  CS L ++   +Q+H  L +     D+   +AL+D YSK G V+DA  +F+     +
Sbjct: 340 IIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRN 399

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            +S   ++ G+  +G  EEA+ +F KM++ G+   PN V+  AVL    +      G +I
Sbjct: 400 IISWNALIAGYGNHGHGEEAIDMFEKMLREGMM--PNHVTFLAVLSACSISGLFERGWEI 457

Query: 381 HSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFAR 436
              + + D    P   +   +I +  + G L+++  +  R AP    +  W +++ A   
Sbjct: 458 FQSMTR-DHKVKPRAMHFACMIELLGREGLLDEAYALI-RKAPFQPTANMWAALLRACRV 515

Query: 437 HGNGFKALEL--YEEMKLEGVEPTDVT-FLSLLHACSHVGLVNKGMEFLKSM 485
           HGN    LEL  +   KL G+EP  ++ ++ LL+  +  G + +  +  +++
Sbjct: 516 HGN----LELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTL 563


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 312/559 (55%), Gaps = 2/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL  Y K   +  A ++F +MP RD+V++N M+ G  + G        F      
Sbjct: 176 VVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRK 235

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G         T++  A    +L L  + +H LV        V V N+L+  Y KC     
Sbjct: 236 GLAATRFTFSTVLTVATGVGDLCL-GRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDE 293

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F EM  R+ +++  +I+G   N+     L+LF +M     +  +L Y S +     
Sbjct: 294 MKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGS 353

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  +  G+QIH  L  L L S+  + +AL+DMYSKCG ++ A   F    +  GVS T +
Sbjct: 354 VPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAM 413

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G  QNG +EEA+QLF  M +AG+  D    S+ +        +GLG+Q+HS +I+S  
Sbjct: 414 ITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGH 473

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ F  + L++MY+KCG L+++++ F  M  RNS+SWN++I+A+A +G    A++++E 
Sbjct: 474 MSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEG 533

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G +P  VTFLS+L ACSH GL  + M++ + M   + ISP  EHY+CV+D +GR G
Sbjct: 534 MLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVG 593

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
              + +  +  MP + D ++W ++L +C  HG+ ++ + AAEKLF        PY++++N
Sbjct: 594 RFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSN 653

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           I++ +G+W++ A   K M++ G+ KETG SW+E++ +V+SF  +D+ +P    I   L  
Sbjct: 654 IFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELER 713

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L + M  +GY P+    L 
Sbjct: 714 LYKEMDKQGYKPDTSCTLQ 732



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 227/466 (48%), Gaps = 24/466 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLR--NGEFDMGFGFFKRSLE 148
           N +LS Y +  Q+  A  LF   P  +RD V+W  M+  F              F+  L 
Sbjct: 70  NRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLR 129

Query: 149 LGFYQLDQASFTIILS---ACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKC 204
            G    D+ +   +L+   A   +  +++   +H      G     V V N L+ +Y K 
Sbjct: 130 EGVAP-DRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKH 188

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G  ++ R+VF EM  R+ +T+ A++ G  +   + E L LF  M    +     T+ + +
Sbjct: 189 GLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVL 248

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              +G+  LC GRQ+HG++ + A  S++ + ++L+D YSKC  +++  ++F    E D V
Sbjct: 249 TVATGVGDLCLGRQVHGLVAR-ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNV 307

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S  V++ G+A N      ++LF +M     +      +++L V G    +G+GKQIH+ +
Sbjct: 308 SYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQL 367

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +    +S   V N LI+MYSKCG L+ +   F     +  VSW +MI    ++G   +AL
Sbjct: 368 VLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEAL 427

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV--- 501
           +L+  M+  G+ P   TF S + A S++ ++  G        ++H    R+ H + V   
Sbjct: 428 QLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLG-------RQLHSYLIRSGHMSSVFSG 480

Query: 502 ---VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              +DM  + G L EA    + MP + + + W A++ A + +G ++
Sbjct: 481 SALLDMYTKCGCLDEALQTFDEMPER-NSISWNAVISAYAHYGQAK 525



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 13/227 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LLS++    H  +G  +HA  +          +  + +  ++ N+L+  Y KC  +  A 
Sbjct: 347 LLSVAGSVPHIGIGKQIHAQLV----------LLGLSSEDLVGNALIDMYSKCGMLDAAK 396

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             F +   +  VSW  M++G ++NG+ +     F      G    D+A+F+  + A    
Sbjct: 397 TNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGL-SPDRATFSSTIKASSNL 455

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            +  + + +H  +   G+   V  G+AL+  Y KCG      + F EM  RN I+W AVI
Sbjct: 456 AMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVI 515

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALC 274
           S        +  +K+F  M      P+S+T+LS + ACS  GL   C
Sbjct: 516 SAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEEC 562



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 91/208 (43%), Gaps = 19/208 (9%)

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           L  +MVK G   DP      L +  + +S G   Q  +L  +    +N F  N +++ YS
Sbjct: 21  LDARMVKTGF--DPATYRLNLLLHSLISS-GRLAQARALFDQMPHRNNAFSLNRMLSGYS 77

Query: 405 KCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARH--GNGFKALELYEEMKLEGVEPTDV 460
           + G L  +  +F    P  R++V+W  MI AFA         A+ L+ +M  EGV P  V
Sbjct: 78  RSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRV 137

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE--HYACVV-----DMVGRAGLLIE 513
           T  ++L+     G    G      +  +H  + +    H   VV     D   + GLL  
Sbjct: 138 TVATVLNLPPASG----GTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAA 193

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHG 541
           AR   + MP + D + + A++  CS  G
Sbjct: 194 ARRVFQEMPHR-DSVTYNAMMMGCSKEG 220


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 307/551 (55%), Gaps = 7/551 (1%)

Query: 95   LLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            L+S Y KC  +  A  +F +MP+  R  V+WN M+  + +N      FG     L+ G  
Sbjct: 479  LVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 153  QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              D  SFT +LS+C  S+ + V +M  C++   GY     +  ALI+ + +C      R 
Sbjct: 539  P-DALSFTSVLSSCYCSQEAQVLRM--CILE-SGYRS-ACLETALISMHGRCRELEQARS 593

Query: 213  VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            VF EM   +V++WTA++S   +N+ ++E   LF +M L  + P+  T  +++  C     
Sbjct: 594  VFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTT 653

Query: 273  LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            L  G+ IH  + ++ L++D+ +E+AL++MYS CG   +A   FE  +  D VS  ++   
Sbjct: 654  LGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713

Query: 333  FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +AQ G  +EA+ LF  M   G++ D    S  L V G    +  GK  H L  +S   S+
Sbjct: 714  YAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSD 773

Query: 393  PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
              V  GL+ +Y+KCG L+++I +F        V  N++I A A+HG   +A++++ +M+ 
Sbjct: 774  VSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQ 833

Query: 453  EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            EGV P   T +S++ AC H G+V +G     +M E   ISP  EHYAC VD++GRAG L 
Sbjct: 834  EGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLE 893

Query: 513  EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
             A   I +MP + + LVW +LLG C + GD+E+G+  A+++    P + A +++++NIY 
Sbjct: 894  HAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYC 953

Query: 573  CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             +G+WK+     K++ +  V    G+SW+EI KQVH FV  D+ HPQ D I+ VL +L  
Sbjct: 954  ATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLEL 1013

Query: 633  LMIDEGYVPNK 643
            LM   GY  +K
Sbjct: 1014 LMRRAGYEADK 1024



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 134/459 (29%), Positives = 234/459 (50%), Gaps = 22/459 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y++C  +  A  +F  M  R+ VSW  ++S   ++G F   F  F+  L     
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSA 123

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT----VGNALITSYFKCGSSS 208
             +  +   +L+AC  S    + + IH +++  G E E T    VGNA+I  Y KCGS  
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPE 183

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               VF  +  ++V++WTA+     Q  + Y + L++F +M L  + PN +T+++++ AC
Sbjct: 184 DAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC 243

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF---AEELDGV 324
           + L+   +G  +H +L +  L  D    +AL++MY KCG  E A+ +F+     +ELD V
Sbjct: 244 TSLR---DGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLV 300

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV-----LGVFGVDTSLGLGKQ 379
           S   ++    + G   +AM +F ++   G+   PN V+ +     L   GVD   G  ++
Sbjct: 301 SWNAMISASVEAGRHGDAMAIFRRLRLEGMR--PNSVTLITILNALAASGVD--FGAARK 356

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHG 438
            H  I +S +  +  V N +I+MY+KCG    +  VF R+  + + +SWN+M+ A     
Sbjct: 357 FHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRK 416

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +  K +  +  M L G++P  V+F+++L+ACS+   ++ G +    +    R    +   
Sbjct: 417 SFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVA 476

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLV-WQALLGA 536
             +V M G+ G + EA    + MP+    LV W  +LGA
Sbjct: 477 TMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/401 (32%), Positives = 210/401 (52%), Gaps = 18/401 (4%)

Query: 150 GFYQLDQAS----FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           G  ++D+A+    +T +L +C  S      K  H L+   G E+ + +GN LI  Y +CG
Sbjct: 15  GAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCG 74

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSV 264
           S      +F +M  RNV++WTA+IS   Q+  +     LF  M L     PNS T ++ +
Sbjct: 75  SLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAML 134

Query: 265 MACSGLQALCEGRQIHGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            AC+  + L  GR IH ++W+L L+ +      + +A+++MY+KCGS EDA  +F    E
Sbjct: 135 NACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPE 194

Query: 321 LDGVSMTVILVGFAQ-NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
            D VS T +   +AQ   F  +A+++F +M+     + PN+++ +  + G  TSL  G  
Sbjct: 195 KDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ--PLAPNVITFITAL-GACTSLRDGTW 251

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS---VSWNSMIAAFAR 436
           +HSL+ ++    +P   N LINMY KCGD E +  VF  MA R     VSWN+MI+A   
Sbjct: 252 LHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVE 311

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL-VNKGMEFLKSMTEVHRISPRA 495
            G    A+ ++  ++LEG+ P  VT +++L+A +  G+      +F   + E   +    
Sbjct: 312 AGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVV 371

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              A ++ M  + G    A +   R+  K DV+ W  +LGA
Sbjct: 372 VGNA-IISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 225/474 (47%), Gaps = 37/474 (7%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            AT++ N++++ Y KC    +A+ +F  +P +D VSW  M   + +   F        R 
Sbjct: 164 TATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFRE 223

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L     +  +F   L AC           +H L++  G   +   GNALI  Y KCG 
Sbjct: 224 MLLQPLAPNVITFITALGACTSLR---DGTWLHSLLHEAGLGFDPLAGNALINMYGKCGD 280

Query: 207 SSSGRKVFGEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS- 262
                 VF  M  R   ++++W A+IS  V+   + + + +F ++ L  + PNS+T ++ 
Sbjct: 281 WEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITI 340

Query: 263 -SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-E 320
            + +A SG+      R+ HG +W+     D+ + +A++ MY+KCG    AW +F     +
Sbjct: 341 LNALAASGVD-FGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWK 399

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGK 378
            D +S   +L          + +  F  M+ AG  IDPN VS  A+L       +L  G+
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG--IDPNKVSFIAILNACSNSEALDFGR 457

Query: 379 QIHSLII--KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAF 434
           +IHSLI+  + D+  +  V   L++MY KCG + ++  VF  M    R+ V+WN M+ A+
Sbjct: 458 KIHSLILTRRRDYVESS-VATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAY 516

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A++    +A     EM   GV P  ++F S+L +C           +     +V R+   
Sbjct: 517 AQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-----------YCSQEAQVLRMCIL 565

Query: 495 AEHY--AC----VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
              Y  AC    ++ M GR   L +ARS  + M    DV+ W A++ A + + D
Sbjct: 566 ESGYRSACLETALISMHGRCRELEQARSVFDEMD-HGDVVSWTAMVSATAENRD 618



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 176/353 (49%), Gaps = 9/353 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +L+S + +C ++  A  +FD+M   D VSW  MVS    N +F      F+R ++L   
Sbjct: 576 TALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRR-MQLEGV 634

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +    L  C  S    + K+IH  V   G E ++ V NAL+  Y  CG       
Sbjct: 635 IPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALS 694

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  M+ R++++W  + +   Q  L +E + LF  M L  + P+ LT+ +++    G   
Sbjct: 695 FFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSAL 754

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           + +G+  HG+  +  L SD+ + + L+ +Y+KCG +++A  +F  A +   V +  I+  
Sbjct: 755 VSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGA 814

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS--LIIKSDFT 390
            AQ+GF EEA+++F KM + G+  D   + +++   G     G+ ++  S  L +K  F 
Sbjct: 815 LAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG---HAGMVEEGCSSFLTMKEYFG 871

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNG 440
            +P + +    +++  + G LE + ++  +M    N++ W S++      G+ 
Sbjct: 872 ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDA 924



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL+ Y  C   R A+  F+ M  RD VSWN M + + + G        F R ++L   
Sbjct: 677 NALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLF-RHMQLEGV 735

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ +F+  L+    S L    K+ H L    G + +V+V   L+  Y KCG       
Sbjct: 736 KPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAIS 795

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F       V+   A+I  L Q+   EE +K+F KM    + P+  T +S + AC     
Sbjct: 796 LFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGM 855

Query: 273 LCEG-------RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + EG       ++  GI     L+   C     +D+  + G +E A QI       D   
Sbjct: 856 VEEGCSSFLTMKEYFGI--SPTLEHYAC----FVDLLGRAGQLEHAEQIIRKMPFEDNTL 909

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           +   L+G  +   + E  +   + +   +E+DP+  +A
Sbjct: 910 VWTSLLGTCKLQGDAELGERCAQRI---LELDPHNSAA 944


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/550 (34%), Positives = 303/550 (55%), Gaps = 2/550 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N  + FY KC +++   KLFD M  ++ VSW T+++G ++N         F     +G +
Sbjct: 281 NGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMG-W 339

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D    T +L++C         + +H        + +  V N LI  Y KC S +  RK
Sbjct: 340 NPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARK 399

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M   +++++ A+I G  +     E L LF +M L L +P  L ++S +   + L  
Sbjct: 400 VFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYH 459

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L    QIHG++ K  +  D    SAL+D+YSKC  V DA  +FE  ++ D V  T +  G
Sbjct: 460 LELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSG 519

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + Q    EE+++L+  +  + ++ +    +AV+       SL  G+Q H+ +IK  F  +
Sbjct: 520 YTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDD 579

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
           PFV N L++MY+K G +E++ K F     +++  WNSMIA +A+HG   KAL+++E+M +
Sbjct: 580 PFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIM 639

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           EG++P  VTF+ +L ACSH GL++ G +   SM++   I P  EHY C+V ++GRAG L 
Sbjct: 640 EGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQF-GIEPGIEHYVCMVSLLGRAGKLY 698

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA+ FIE+MP+K   +VW++LL AC + G+ E+G YAAE      P     Y+L++NI++
Sbjct: 699 EAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFA 758

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             G W    +  ++M   GV KE G SWIE+  ++H F+  D  H  +  I  VL  LL 
Sbjct: 759 SKGMWVNVRRLREKMDISGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLLL 818

Query: 633 LMIDEGYVPN 642
            +   GY+ N
Sbjct: 819 QIKGFGYMAN 828



 Score =  221 bits (563), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 138/479 (28%), Positives = 250/479 (52%), Gaps = 16/479 (3%)

Query: 80  QNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
           Q+VY       +  SL+ FY K   + +A  LFD + ++ + +W T+++G+ + G   + 
Sbjct: 174 QDVY-------VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVS 226

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
              F +  E G    D+   + +LSAC   +     K IHC V   G   +V++ N  I 
Sbjct: 227 LKLFDQMKE-GHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFID 285

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            YFKC     GRK+F  M  +NV++WT VI+G +QN  + + L LFV+M     NP++  
Sbjct: 286 FYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFG 345

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S + +C  L AL +GRQ+H    K+ + +D  +++ L+DMY+KC S+ DA ++F    
Sbjct: 346 CTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMA 405

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
            +D VS   ++ G+++     EA+ LF +M  +       +  ++LGV      L L  Q
Sbjct: 406 AIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQ 465

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH LIIK   + + F  + LI++YSKC  + D+  VF  +  ++ V W +M + + +   
Sbjct: 466 IHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSE 525

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             ++L+LY+ +++  ++P + TF +++ A S++  +  G +F     +V ++    + + 
Sbjct: 526 NEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQF---HNQVIKMGFDDDPFV 582

Query: 500 C--VVDMVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
              +VDM  ++G + EA ++FI       D   W +++   + HG++E      E + +
Sbjct: 583 ANTLVDMYAKSGSIEEAHKAFISTN--WKDTACWNSMIATYAQHGEAEKALQVFEDMIM 639



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 235/455 (51%), Gaps = 8/455 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y K + + +A KLFD M  ++ V+W++MVS +  +         F + +     
Sbjct: 78  NTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFMRSCNE 137

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++     ++ AC +      +  IH LV   GY ++V V  +LI  Y K       R 
Sbjct: 138 KPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARL 197

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  ++V+   TWT +I+G  +    +  LKLF +M  G + P+     S + AC  L+ 
Sbjct: 198 LFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKF 257

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+QIH  + +  +  D+ + +  +D Y KC  V+   ++F+   + + VS T ++ G
Sbjct: 258 LEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAG 317

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             QN F  +A+ LFV+M + G   D    ++VL   G   +L  G+Q+H+  IK +  ++
Sbjct: 318 CMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDND 377

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV NGLI+MY+KC  L D+ KVF+ MA  + VS+N+MI  ++R     +AL+L+ EM+L
Sbjct: 378 DFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRL 437

Query: 453 EGVEPTDVTFLSLLHACS---HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
               PT + F+SLL   +   H+ L N+    +  +   + +S      + ++D+  +  
Sbjct: 438 SLSSPTLLIFVSLLGVSASLYHLELSNQ----IHGLIIKYGVSLDEFAGSALIDVYSKCS 493

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + +AR   E +  K D++VW A+    +   ++E
Sbjct: 494 RVGDARLVFEEIQDK-DIVVWTAMFSGYTQQSENE 527



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 179/381 (46%), Gaps = 18/381 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IK           N+ N   + N L+  Y KCD + +A K+F+ M   D VS
Sbjct: 362 GRQVHAYAIKV----------NIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVS 411

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +N M+ G+ R  +       F R + L         F  +L          +S  IH L+
Sbjct: 412 YNAMIEGYSRQDKLCEALDLF-REMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLI 470

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   +   G+ALI  Y KC      R VF E++ ++++ WTA+ SG  Q    EE L
Sbjct: 471 IKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESL 530

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KL+  + +  + PN  T+ + + A S + +L  G+Q H  + K+    D  + + L+DMY
Sbjct: 531 KLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMY 590

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +K GS+E+A + F      D      ++  +AQ+G  E+A+Q+F  M+  G++  PN V+
Sbjct: 591 AKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLK--PNYVT 648

Query: 363 AVLGVFGVDTSLG-LGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM 419
            V GV    +  G L          S F   P + +   ++++  + G L ++ +   +M
Sbjct: 649 FV-GVLSACSHTGLLDLGFDHFDSMSQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKM 707

Query: 420 APRN-SVSWNSMIAAFARHGN 439
             +  +V W S+++A    GN
Sbjct: 708 PIKQAAVVWRSLLSACRVSGN 728



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 180/361 (49%), Gaps = 4/361 (1%)

Query: 176 KMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           K IH  + + G+ + ++ + N L+ +Y K    +   K+F  M  +N++TW++++S    
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 235 NQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           +    E L LFV+ M      PN     S V AC+    L    QIHG++ K     D+ 
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+D Y+K   ++DA  +F+  +     + T I+ G+++ G  + +++LF +M +  
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           +  D  ++S+VL    +   L  GKQIH  +++S    +  + NG I+ Y KC  ++   
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           K+F RM  +N VSW ++IA   ++     AL+L+ EM   G  P      S+L++C  + 
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLV 357

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            + KG +      +V+ I         ++DM  +   L +AR     M    D++ + A+
Sbjct: 358 ALEKGRQVHAYAIKVN-IDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAA-IDLVSYNAM 415

Query: 534 L 534
           +
Sbjct: 416 I 416



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 23/207 (11%)

Query: 378 KQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           K+IHS I+   F  +  F+ N L++ YSK   +  + K+F  M+ +N V+W+SM++ +  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 437 HGNGFKALELYEE-MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           H +  +AL L+ + M+    +P +    S++ AC+  G +N  +       ++H +  + 
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPAL-------QIHGLVVKG 170

Query: 496 EH----YAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            +    Y C  ++D   +   + +AR   + + VK     W  ++   S  G S++    
Sbjct: 171 GYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTS-FTWTTIIAGYSKQGRSQV---- 225

Query: 550 AEKLFLAQPDS---PAPYILMANIYSC 573
           + KLF    +    P  Y+L + + +C
Sbjct: 226 SLKLFDQMKEGHVCPDKYVLSSVLSAC 252


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/543 (33%), Positives = 307/543 (56%), Gaps = 4/543 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FDD+P      WN ++ G+ RN  F      +  +++L     D  +F  +L AC 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS-NMQLARVSPDSFTFPHLLKACS 130

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITW 225
                 + + +H  V+  G++ +V V N LI  Y KC    S R VF  + +  R +++W
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA++S   QN    E L++F +M    + P+ +  +S + A + LQ L +GR IH  + K
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           + L+ +  +  +L  MY+KCG V  A  +F+  +  + +    ++ G+A+NG+  EA+ +
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M+   +  D   +++ +       SL   + ++  + +SD+  + F+++ LI+M++K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +E +  VF R   R+ V W++MI  +  HG   +A+ LY  M+  GV P DVTFL L
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGL 430

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+H G+V +G  F   M + H+I+P+ +HYACV+D++GRAG L +A   I+ MPV+P
Sbjct: 431 LMACNHSGMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
            V VW ALL AC  H   E+G+YAA++LF   P +   Y+ ++N+Y+ +  W   A+   
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
           RMKE G++K+ G SW+E+  ++ +F V DK HP+ + I   +  +   + + G+V NK  
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDA 609

Query: 646 ILH 648
            LH
Sbjct: 610 SLH 612



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 205/390 (52%), Gaps = 14/390 (3%)

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           ++I SA  +++L    K IH  + + G +    +   LI +    G  +  R+VF ++  
Sbjct: 26  SLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPR 81

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
             +  W A+I G  +N  +++ L ++  M L  ++P+S T+   + ACSGL  L  GR +
Sbjct: 82  PQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFV 141

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNG 337
           H  +++L   +D+ +++ L+ +Y+KC  +  A  +FE     E   VS T I+  +AQNG
Sbjct: 142 HAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA+++F +M K  ++ D   + +VL  F     L  G+ IH+ ++K      P +  
Sbjct: 202 EPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L  MY+KCG +  +  +F +M   N + WN+MI+ +A++G   +A++++ EM  + V P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISPRAEHY--ACVVDMVGRAGLLIEA 514
             ++  S + AC+ VG     +E  +SM E V R   R + +  + ++DM  + G +  A
Sbjct: 322 DTISITSAISACAQVG----SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           R   +R  +  DV+VW A++    +HG + 
Sbjct: 378 RLVFDRT-LDRDVVVWSAMIVGYGLHGRAR 406



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 209/419 (49%), Gaps = 26/419 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   +   H  +G  +HA   +    FD            + N L++ Y KC ++ +A 
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRL--GFDAD--------VFVQNGLIALYAKCRRLGSAR 174

Query: 110 KLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            +F+ +P+  R  VSW  +VS + +NGE       F +  ++   + D  +   +L+A  
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSVLNAFT 233

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             +     + IH  V   G E E  +  +L T Y KCG  ++ + +F +M+  N+I W A
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG  +N    E + +F +M    + P++++  S++ AC+ + +L + R ++  + +  
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            + D+ I SAL+DM++KCGSVE A  +F+   + D V  + ++VG+  +G   EA+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNN--GLINMYS 404
            M + G+   PN V+  LG+       G+ ++      + +D   NP   +   +I++  
Sbjct: 414 AMERGGVH--PNDVT-FLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLG 470

Query: 405 KCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALEL--YEEMKLEGVEPTDV 460
           + G L+ + +V   M  +  V+ W ++++A  +H    + +EL  Y   +L  ++P++ 
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH----RHVELGEYAAQQLFSIDPSNT 525


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 315/564 (55%), Gaps = 13/564 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV-SWNTMVSGFLRNGEFDMGFGFFKR 145
           N+ +   SL++ Y KC+QM  A+ +F D      V ++N ++SGF+ NG  + GF F+++
Sbjct: 70  NSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQK 129

Query: 146 SLELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               G    D+ +F   + AC D  E+    K IH L++  G E +V +G+AL+  Y K 
Sbjct: 130 MRNEGVIP-DKFTFPCAIKACLDVLEI----KKIHGLLFKFGLELDVFIGSALVNCYLKF 184

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     +  F E+ +R+V+ W A+++G  Q   +E  L+ F +M+   + P+  T    +
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              + +  L  GR IHG   K+   S + + ++L+DMY KC  +EDA +IFE   E D  
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIF 304

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   I+    Q G  +  ++L  +M+ AGI+ D   V+ VL       +L  G++IH  +
Sbjct: 305 SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYM 364

Query: 385 IKSDF------TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           I S          +  + N +I+MY+KCG + D+  VF RM+ ++  SWN MI  +  HG
Sbjct: 365 IVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHG 424

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            G +ALE++  M    ++P +VTF+ +L ACSH G V++G  FL  M   + ++P  EHY
Sbjct: 425 YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHY 484

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            CV+DM+GRAG L EA      MP++ + +VW+ALL AC +H  + + + AA+++F  +P
Sbjct: 485 TCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP 544

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
           +    Y+LM+N+Y   GR++E  +    M++  V K  G SWIE++  VH FV  D+ HP
Sbjct: 545 EHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHP 604

Query: 619 QADTIHGVLAELLRLMIDEGYVPN 642
           +A +I+  L  L   + + GYVP+
Sbjct: 605 EAHSIYAGLNSLTARLREHGYVPD 628



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 182/373 (48%), Gaps = 12/373 (3%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE-MRVRNVITWTAVISGLVQ 234
           K IH  + + G+        +LI  Y KC   +    +F +     NV  + A+ISG + 
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFIT 116

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N   EEG + + KM    + P+  T+  ++ AC  L  L E ++IHG+L+K  L+ D+ I
Sbjct: 117 NGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVL-EIKKIHGLLFKFGLELDVFI 173

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL++ Y K G +E A   FE     D V    ++ G+AQ G  E  ++ F +M    +
Sbjct: 174 GSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESV 233

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
                 V+ VL VF V   L  G+ IH   +K  + S   V+N LI+MY KC  +ED+++
Sbjct: 234 VPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALE 293

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  ++  SWNS+++   + G+    L L + M   G++P  VT  ++L ACSH+  
Sbjct: 294 IFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAA 353

Query: 475 VNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           +  G E    M  V  +    +          V+DM  + G + +A    ERM  K DV 
Sbjct: 354 LMHGREIHGYMI-VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK-DVA 411

Query: 529 VWQALLGACSIHG 541
            W  ++    +HG
Sbjct: 412 SWNIMIMGYGMHG 424



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMI 431
           +L  GK+IHS ++ + F ++P     LINMYSKC  +  ++ +FS      N  ++N++I
Sbjct: 52  NLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK--GMEFLKSMTEVH 489
           + F  +G   +  E Y++M+ EGV P   TF   + AC  V  + K  G+ F K   E+ 
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLF-KFGLELD 170

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
                A     +V+   + GL+  A+   E +P++ DV++W A++   +  G  EM
Sbjct: 171 VFIGSA-----LVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEM 220


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 214/638 (33%), Positives = 345/638 (54%), Gaps = 40/638 (6%)

Query: 27   KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFD----NQNV 82
            K+ + P S+T+KL  D           S         PS++   +  +E FD    N  +
Sbjct: 1903 KVAKTPMSTTTKLDKDE--------KGSYPYACLSESPSIYVCVVNFYECFDGITYNSIL 1954

Query: 83   YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
            + VP+     ++L +++ K     N              SWN++++   R G+       
Sbjct: 1955 FGVPSGREDHSNLATWFYKYVDKSN------------VHSWNSVIADLARGGDSVEALRA 2002

Query: 143  FKRSLELGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSY 201
            F    +LG     ++SF   + +C  +   LVS +M H   ++ G+E ++ V +ALI  Y
Sbjct: 2003 FSSLRKLGLIPT-RSSFPCTIKSCS-ALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMY 2060

Query: 202  FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF-------VKMHLGLIN 254
             KCG     R +F E+ +RNV++WT++I+G VQN+  +  L LF        ++  G   
Sbjct: 2061 SKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNV 2120

Query: 255  P-NSLTYLSSVMACSGL--QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            P +S+  +S + ACS +  + + EG  +HG + K      + + + LMD Y+KCG    +
Sbjct: 2121 PLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVS 2178

Query: 312  WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGV 370
             ++F++ EE D +S   ++  +AQ+G   EA+++F  MV+  G+  +   +SAVL     
Sbjct: 2179 KKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAH 2238

Query: 371  DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              +L  GK IH  +IK D   N  V   +I+MY KCG +E + K F RM  +N  SW +M
Sbjct: 2239 AGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAM 2298

Query: 431  IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
            +A +  HG   +AL+++ +M   GV+P  +TF+S+L ACSH GLV +G  +  +M   + 
Sbjct: 2299 VAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYD 2358

Query: 491  ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
            I P  EHY C+VD+ GRAG L EA + I+RM +KPD +VW +LLGAC IH + ++G+ AA
Sbjct: 2359 IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAA 2418

Query: 551  EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
            +KLF   PD+   Y+L++N+Y+ +GRW +  +    MK   + K  G S +E++ +VH F
Sbjct: 2419 QKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVF 2478

Query: 611  VVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            +V DK HP  + I+  L +L   +   GYVPN   +LH
Sbjct: 2479 LVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH 2516



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 178/373 (47%), Gaps = 37/373 (9%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + IH  +   G   +  +   LI  Y   G  +    +F +++     TW  +I     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            L E+ L L+  M    I  +  T+   + AC+   ++  G+ +HG L K     D+ ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 296 SALMDMYSKCG-------------------------------SVEDAWQIFEFAEELDGV 324
           + L+D Y KCG                                +++A +IF+     + V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIH 381
           S T ++ G+ +N   EEA++LF +M      I PN  + V  +    T +G   LG+ IH
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRM--QAENIFPNEYTMV-SLIKACTEMGILTLGRGIH 280

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
              IK+      ++   LI+MYSKCG ++D+I+VF  M  ++  +WNSMI +   HG G 
Sbjct: 281 DYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQ 340

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL L+ EM+   V+P  +TF+ +L AC H+  V +G  +   MT+ + I+P  EHY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400

Query: 502 VDMVGRAGLLIEA 514
            ++  R+  L EA
Sbjct: 401 TELYARSNNLDEA 413



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 32/302 (10%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  ++   L+  Y    ++  A+ LF  +    T +WN ++     NG  +     +K  
Sbjct: 57  NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM 116

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G    D+ +F  ++ AC       + K++H  +   G+  +V V N LI  YFKCG 
Sbjct: 117 VCQGI-AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLV-------------------------------QN 235
           +    KVF +MRVRNV++WT VISGL+                               +N
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           Q  EE L+LF +M    I PN  T +S + AC+ +  L  GR IH    K  ++  + + 
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +AL+DMYSKCGS++DA ++FE        +   ++     +G  +EA+ LF +M +  ++
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 356 ID 357
            D
Sbjct: 356 PD 357



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 77/385 (20%)

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           RQIH  + +  L +D  +   L+ +YS  G +  A  +F   +     +  +I+     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 337 GFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           G  E+A+ L+  MV  GI  D    P ++ A      +D    LGK +H  +IK  F+ +
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSID----LGKVVHGSLIKYGFSGD 159

Query: 393 PFVNNGLINMYSKCG-------------------------------DLEDSIKVFSRMAP 421
            FV N LI+ Y KCG                               DL+++ ++F  +  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +N VSW +MI  + R+    +ALEL++ M+ E + P + T +SL+ AC+ +G++  G   
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 482 ----------------------------LKSMTEVHRISPRAE--HYACVVDMVGRAGLL 511
                                       +K   EV    PR     +  ++  +G  GL 
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 512 IEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YIL 566
            EA +    +ER+ VKPD + +  +L AC    + + G     ++      +P P  Y  
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 567 MANIYSCSGRWKERAKAIKRMKEMG 591
           M  +Y+ S    E   A K  KE+G
Sbjct: 400 MTELYARSNNLDE---AFKSTKEVG 421



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 67  HASF-IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           H  F +K FE    +NV       V W +++S  + C  ++ A ++FD++P ++ VSW  
Sbjct: 175 HTRFALKVFEKMRVRNV-------VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTA 227

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M++G++RN + +     FKR      +  ++ +   ++ AC    +  + + IH      
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
             E  V +G ALI  Y KCGS     +VF  M  +++ TW ++I+ L  + L +E L LF
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
            +M    + P+++T++  + AC  ++ + EG
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEG 377


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 205/647 (31%), Positives = 339/647 (52%), Gaps = 64/647 (9%)

Query: 11  NSNF-PFCSSLVSPFITKIIQDPTSSTSKLVLD--NYVDISRLLSISAKEGHFHLGPSLH 67
           N+N+  FC+      IT  +++     ++ V D  ++ D+             +L   + 
Sbjct: 3   NANYTKFCTFSYQSMITDHLRNQRIDEARTVFDKVSFPDV-------------YLYTMMI 49

Query: 68  ASFIKTFEPFDN--QNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
             + + +  FD+  Q  Y +P   V+ WNS++     C  +  A KLFD+MP R  VSW 
Sbjct: 50  TGYARNYR-FDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWT 108

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           TM++GFL+ G+ ++  G F +   + F                                 
Sbjct: 109 TMINGFLQFGKIEVAEGLFYK---MPF--------------------------------- 132

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
                ++   N++I  Y   G    G ++F EM  RNVI+WT++I GL Q+   EE L L
Sbjct: 133 ----RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGL 188

Query: 245 FVKMHLGL---INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           F +M +G    + P S TY   + AC+   AL +G QIH  ++KL    D  I +AL+  
Sbjct: 189 FRQM-MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITF 247

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+ C  +ED+ ++F     ++ V  T ++ G+  N   E+A+++F +M++ G+  + +  
Sbjct: 248 YANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSF 307

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++ L       +L  G++IH+  +K    ++ FV N LI MY +CG+L D + +F R++ 
Sbjct: 308 TSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISK 367

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +N VSWNS+I   A+HG G  AL  + +M    VEP ++TF  LL ACSH G+  KG   
Sbjct: 368 KNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCL 427

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            K  +E      + +HYAC+VD++GR+G L EA   I  MPVK + +VW  LL AC++H 
Sbjct: 428 FKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHS 487

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
             E+ + AA+ +   +P   + Y+L++N+Y+ + RW + ++  + MK+ G+ K+ G SWI
Sbjct: 488 KLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWI 547

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            I+   + F+  D+ HP +D I+  L  L   + + GYVP++RF LH
Sbjct: 548 TIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALH 594


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 326/561 (58%), Gaps = 8/561 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y  C  +  A ++FD +  +D VSW  MV+ +  N   +     F +   +G
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIH-CLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            Y+ +  + +  L +C+  E   V K +H C + +C Y+ ++ VG AL+  Y K G  + 
Sbjct: 201 -YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC-YDRDLYVGIALLELYTKSGEIAE 258

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACS 268
            ++ F EM   ++I W+ +IS   Q+   +E L+LF +M    ++ PN+ T+ S + AC+
Sbjct: 259 AQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACA 318

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L  L  G QIH  + K+ L S++ + +ALMD+Y+KCG +E++ ++F  + E + V+   
Sbjct: 319 SLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNT 378

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIK 386
           I+VG+ Q G  E+A+ LF  M+  G++I P  V  S+VL       +L  G+QIHSL IK
Sbjct: 379 IIVGYVQLGDGEKALNLFSNML--GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIK 436

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           + +  +  V N LI+MY+KCG ++D+   F +M  ++ VSWN++I  ++ HG G +AL L
Sbjct: 437 TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNL 496

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++ M+    +P  +TF+ +L ACS+ GL++KG    KSM + + I P  EHY C+V ++G
Sbjct: 497 FDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLG 556

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+G   EA   I  +P +P V+VW+ALLGAC IH + ++GK  A+++   +P   A ++L
Sbjct: 557 RSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVL 616

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+Y+ + RW   A   K MK+  V KE G+SW+E +  VH F V D  HP    I  +
Sbjct: 617 LSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAM 676

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           L  L +   D GYVP+   +L
Sbjct: 677 LEWLYKKTRDAGYVPDCSVVL 697



 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/480 (30%), Positives = 266/480 (55%), Gaps = 14/480 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G SLH   +K     D              N LL+ Y+    + +A KLFD+MP+ +TVS
Sbjct: 22  GKSLHCHILKHGASLD----------LFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVS 71

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           + T+  GF R+ +F        R    G Y+++Q  FT +L      +L+     +H  V
Sbjct: 72  FVTLAQGFSRSHQFQRARRLLLRLFREG-YEVNQFVFTTLLKLLVSMDLADTCLSVHAYV 130

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
           Y  G++ +  VG ALI +Y  CG+  + R+VF  +  +++++WT +++   +N  +E+ L
Sbjct: 131 YKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSL 190

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF +M +    PN+ T  +++ +C+GL+A   G+ +HG   K+    DL +  AL+++Y
Sbjct: 191 LLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELY 250

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV- 361
           +K G + +A Q FE   + D +  ++++  +AQ+   +EA++LF +M ++ + +  N   
Sbjct: 251 TKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTF 310

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++VL        L LG QIHS ++K    SN FV+N L+++Y+KCG++E+S+K+F+    
Sbjct: 311 ASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTE 370

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +N V+WN++I  + + G+G KAL L+  M    ++PT+VT+ S+L A + +  +  G + 
Sbjct: 371 KNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQ- 429

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + S+T     +  +     ++DM  + G + +AR   ++M  K D + W AL+   SIHG
Sbjct: 430 IHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 166/338 (49%), Gaps = 5/338 (1%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  S+  +L    R+      K +HC +   G   ++   N L+ +Y   G      K+
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACSGLQ 271
           F EM + N +++  +  G  ++  ++   +L +++      +N    T L  ++    L 
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
             C    +H  ++KL  Q+D  + +AL+D YS CG+V+ A Q+F+     D VS T ++ 
Sbjct: 121 DTC--LSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVA 178

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +A+N   E+++ LF +M   G   +   +SA L       +  +GK +H   +K  +  
Sbjct: 179 CYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR 238

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V   L+ +Y+K G++ ++ + F  M   + + W+ MI+ +A+     +ALEL+  M+
Sbjct: 239 DLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMR 298

Query: 452 LEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
               V P + TF S+L AC+ + L+N G +    + +V
Sbjct: 299 QSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV 336



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 143/286 (50%), Gaps = 25/286 (8%)

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+ +H  + K     DL  ++ L++ Y   G +EDA ++F+     + VS   +  GF++
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGKQIHSLIIKSDFTS 391
           +   + A +L +++ + G E++  + + +L +       DT L     +H+ + K    +
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLS----VHAYVYKLGHQA 137

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV   LI+ YS CG+++ + +VF  +  ++ VSW  M+A +A +     +L L+ +M+
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHYA--CVVDMV 505
           + G  P + T  + L +C+       G+E  K    VH    ++    + Y    ++++ 
Sbjct: 198 IMGYRPNNFTISAALKSCN-------GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELY 250

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            ++G + EA+ F E MP K D++ W  ++   S +  S+  K A E
Sbjct: 251 TKSGEIAEAQQFFEEMP-KDDLIPWSLMI---SRYAQSDKSKEALE 292



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V  S +L  SA       G  +H+  IKT        +YN    +V+ NSL+  Y KC +
Sbjct: 409 VTYSSVLRASASLVALEPGRQIHSLTIKT--------MYN--KDSVVANSLIDMYAKCGR 458

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +A   FD M  +D VSWN ++ G+  +G        F   ++    + ++ +F  +LS
Sbjct: 459 IDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDM-MQQSNSKPNKLTFVGVLS 517

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF--KCGSSSSGRKVFGEMRVR-N 221
           AC  + L L     H    L  Y  E  + +     +   + G      K+ GE+  + +
Sbjct: 518 ACSNAGL-LDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPS 576

Query: 222 VITWTAVISGLV 233
           V+ W A++   V
Sbjct: 577 VMVWRALLGACV 588



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK +H  I+K   + + F  N L+N Y   G LED+ K+F  M   N+VS+ ++   F+R
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
                +A  L   +  EG E     F +LL     + L +     L     V+++  +A+
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTC---LSVHAYVYKLGHQAD 138

Query: 497 HY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS---IHGDSEMGKYAAE 551
            +    ++D     G +  AR   + +  K D++ W  ++   +    H DS +  +   
Sbjct: 139 AFVGTALIDAYSVCGNVDAARQVFDGIYFK-DMVSWTGMVACYAENYCHEDSLL-LFCQM 196

Query: 552 KLFLAQPDSPAPYILMANIYSCSG 575
           ++   +P++   + + A + SC+G
Sbjct: 197 RIMGYRPNN---FTISAALKSCNG 217


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 198/554 (35%), Positives = 317/554 (57%), Gaps = 5/554 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+S Y +C  +  A K++ ++  +D    N M+S + + G  +   G F   L  G
Sbjct: 216 VGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSG 275

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  +FT ++SAC+      V +++H +   CG  +E++VGNA+++ Y K G     
Sbjct: 276 L-EPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEA 334

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSG 269
            K F  M  RN+++WTA++SG V+N   ++ L+ F + + LG +  +S  + + +  CS 
Sbjct: 335 EKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELG-VGFDSCCFATLLDGCSE 393

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + L  G QIHG + KL    D+ + +AL+D+Y+KC  +  A  +F    + + VS   I
Sbjct: 394 CKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAI 453

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L G+     EE+AM LF ++  A I+ D    + +L +      L  GK +H+ IIK+ F
Sbjct: 454 LSGYI-GADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGF 512

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +NP V N +I MY+KCG + D+ ++F  M   +S+SWN++I+A+A HG G KAL L+EE
Sbjct: 513 EANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEE 572

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK E   P ++T LS+L ACS+ GL+ +G      M   + I P  EH+AC+VD++GRAG
Sbjct: 573 MKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAG 632

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA SFI R P     L+W+ L+  C +HGD   G+ A++ L    P+    YIL++N
Sbjct: 633 YLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSN 692

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+  G   E A+    M ++ V KE G SWIEI+ +VH FV  DK HP++  I+  L +
Sbjct: 693 LYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDNKVHQFVASDKDHPESKEIYAKL-D 751

Query: 630 LLRLMIDEGYVPNK 643
           LL+  + +  + N+
Sbjct: 752 LLKSEMKQNMIYNR 765



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 259/533 (48%), Gaps = 46/533 (8%)

Query: 30  QDPTSST--SKLVLDN--------YVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDN 79
           QDP S T  S +V  N        + D  +LL IS   G   LG ++HA   K       
Sbjct: 54  QDPNSKTTHSSMVYCNSDSDQNPLFNDWPQLLQISIGSGDLMLGQAIHAFLAKL------ 107

Query: 80  QNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
                  N     N+L++ Y K +++ +A  +FD+M +R+T++W T++ G L+  + +  
Sbjct: 108 ----GYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESV 163

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
           F   +    +G  + ++ + ++IL ACD  E  +  + IH  V   G++E+V VG +LI+
Sbjct: 164 FRIAREMYWVG-EEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLIS 222

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y +CG   +  KV+  +  ++V     +IS   +    E+ + +F+ +    + PN  T
Sbjct: 223 MYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYT 282

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + + + AC+G   +   R +HG+  K     ++ + +A++ +Y K G +E+A + F    
Sbjct: 283 FTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMG 342

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + VS T +L G+ +NG  ++A++ F ++++ G+  D    + +L       +LGLG Q
Sbjct: 343 ERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQ 402

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH  ++K  +  +  V   LI++Y+KC  L  +  VF  +  +N VS+N++++ +    +
Sbjct: 403 IHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIG-AD 461

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLH-----------ACSHVGLVNKGMEFLKSMTEV 488
              A+ L+ +++L  ++P  VTF  LL             C H  ++  G E   S+   
Sbjct: 462 EEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNA 521

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                       V+ M  + G + +A      M    D + W A++ A ++HG
Sbjct: 522 ------------VITMYAKCGSIGDACQLFYSMNYL-DSISWNAVISAYALHG 561



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 191/393 (48%), Gaps = 11/393 (2%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           ++ + IH  +   GY+ +   GN L+  Y K       + VF EM VRN ITWT +I G 
Sbjct: 95  MLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGH 154

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
           +Q    E   ++  +M+      N  T    + AC  L+ L  G QIHG + K     D+
Sbjct: 155 LQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDV 214

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + ++L+ MYS+CG +  A +++      D   +  ++  + + G  E+A+ +F+ ++ +
Sbjct: 215 FVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGS 274

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+E +    + V+     D  + + + +H + IK        V N ++++Y K G LE++
Sbjct: 275 GLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEA 334

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            K F  M  RN VSW ++++ + ++GNG KALE + ++   GV      F +LL  CS  
Sbjct: 335 EKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSEC 394

Query: 473 GLVNKGME---FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
             +  G++   F+  +  VH +S        ++D+  +   L  AR     + +  +++ 
Sbjct: 395 KNLGLGLQIHGFVVKLGYVHDVSVG----TALIDLYAKCRKLRSARLVFHSL-LDKNIVS 449

Query: 530 WQALLGACSIHGDSE--MGKYAAEKLFLAQPDS 560
           + A+L    I  D E  M  ++  +L   +PDS
Sbjct: 450 FNAILSG-YIGADEEDAMALFSQLRLADIKPDS 481


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 330/608 (54%), Gaps = 13/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NY  +S LLSI     +   G  +H   +K          Y + +   + N+LLS Y   
Sbjct: 260 NYTTLSILLSICGSVDYLKWGKGVHGLAVK----------YGLESNICLCNTLLSVYSDA 309

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            + ++A  +F  MP RD +SWN+M++ ++++G        F   L +   +++  +FT  
Sbjct: 310 GRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMK-KEINYVTFTSA 368

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L+AC   E     K++H  V + G ++E+ +GN LIT Y KC   +  +KVF  M   + 
Sbjct: 369 LAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDK 428

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCE-GRQIH 280
           +TW A+I G   N    E +  F  M  G  +  + +T ++ + +C   + L + G  IH
Sbjct: 429 VTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIH 488

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                     D  ++S+L+ MY+KCG +  +  IF+            I+   A+ GF E
Sbjct: 489 AHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGE 548

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           EA++L V+M  AGIE D    S  L V      L  G+Q+H   IK  F  + F+ N  +
Sbjct: 549 EALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAM 608

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MY KCG+L+D++++  +   R+ +SWN++I+  ARHG   KA E + +M   GV+P  V
Sbjct: 609 DMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHV 668

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           +F+ LL ACSH GLV++G+ +  SMT V+ I P  EH  C++D++GR+G L+EA +FI  
Sbjct: 669 SFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITE 728

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP+ P+ LVW++LL +C I+ + ++G+ AA+ L    P   + Y+L +N+++  GRW++ 
Sbjct: 729 MPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDV 788

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
                +M    + K+   SW++ +  +  F + D+ HPQ + I+G L  L++++ + GYV
Sbjct: 789 EDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYV 848

Query: 641 PNKRFILH 648
           P+  + L 
Sbjct: 849 PDTSYSLQ 856



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 228/460 (49%), Gaps = 11/460 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  +  C  +  A  +F++M  RDT+SWN+++S   +N   +  F +F   + L   
Sbjct: 199 NSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYF-HWMRLVHE 257

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++  + +I+LS C   +     K +H L    G E  + + N L++ Y   G S     
Sbjct: 258 EINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAEL 317

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M  R++I+W ++++  VQ+      LK+F +M       N +T+ S++ AC   + 
Sbjct: 318 IFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEF 377

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+ +HG +  L LQ +L I + L+  Y KC  + +A ++F+   +LD V+   ++ G
Sbjct: 378 FTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGG 437

Query: 333 FAQNGFEEEAMQLFVKMVKAGIE--IDPNMVSAVLG-VFGVDTSLGLGKQIHSLIIKSDF 389
           FA N    EA+  F K+++ G    +D   +  +LG     +  +  G  IH+  + + F
Sbjct: 438 FANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGF 496

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  V + LI MY+KCGDL  S  +F ++  + S  WN++IAA AR+G G +AL+L   
Sbjct: 497 DLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVR 556

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGR 507
           M+  G+E     F + L   + + ++ +G +   S     ++    +H+     +DM G+
Sbjct: 557 MRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTI---KLGFELDHFIINAAMDMYGK 613

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
            G L +A   + + P     L W  L+   + HG     K
Sbjct: 614 CGELDDALRILPQ-PTDRSRLSWNTLISISARHGQFHKAK 652



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K  ++  A  +FD M  R+  SWN M+SG++R G +     FF+    +G   +  + 
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIG---IKPSG 58

Query: 159 FTI--ILSACDRSELSLVSK---MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           F I  +++AC++S  S+++K     H     CG   +V VG + +  Y   G  S+ +K+
Sbjct: 59  FMIASLVTACNKS--SIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKM 116

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLI-NPNSLTYLSSVMACSGLQ 271
           F EM  RNV++WT+++     N   +E +  + +M H G+  N N++  + S  +C  L 
Sbjct: 117 FNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVIS--SCGFLM 174

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +  G Q+ G   K  L++ +   ++L+ M+  CG + +A  IF    E D +S   I+ 
Sbjct: 175 DIILGHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIIS 234

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             AQN   EE+ + F  M     EI+   +S +L + G    L  GK +H L +K    S
Sbjct: 235 ANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLES 294

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N  + N L+++YS  G  +D+  +F RM  R+ +SWNSM+A + + G    AL+++ EM 
Sbjct: 295 NICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEML 354

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
               E   VTF S L AC        G + L     V  +         ++   G+   +
Sbjct: 355 WMKKEINYVTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGNTLITFYGKCHKM 413

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK-YAAEKLFLAQPDSPAPYILMANI 570
            EA+   +RMP K D + W AL+G  +   ++E+ +  AA KL      S   YI + NI
Sbjct: 414 AEAKKVFQRMP-KLDKVTWNALIGGFA--NNAELNEAVAAFKLMREGSTSGVDYITIVNI 470



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/457 (26%), Positives = 224/457 (49%), Gaps = 13/457 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           S + FY     + NA K+F++MP R+ VSW +++  +  NG        +KR    G   
Sbjct: 99  SFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGIC- 157

Query: 154 LDQASFTIILSACD-RSELSLVSKMI-HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            ++ +  +++S+C    ++ L  +++ H L +  G E +V+  N+LI  +  CG  +   
Sbjct: 158 CNENNIALVISSCGFLMDIILGHQLLGHALKF--GLETKVSAANSLIFMFGGCGDINEAC 215

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSG 269
            +F EM  R+ I+W ++IS   QN L+EE  + F  M L    IN  +L+ L S+  C  
Sbjct: 216 SIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSI--CGS 273

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  L  G+ +HG+  K  L+S++C+ + L+ +YS  G  +DA  IF    E D +S   +
Sbjct: 274 VDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSM 333

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L  + Q+G    A+++F +M+    EI+    ++ L           GK +H  ++    
Sbjct: 334 LACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGL 393

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                + N LI  Y KC  + ++ KVF RM   + V+WN++I  FA +    +A+  ++ 
Sbjct: 394 QDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKL 453

Query: 450 MKLEGVEPTD-VTFLSLLHAC-SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           M+       D +T +++L +C +H  L+  G+  + + T V          + ++ M  +
Sbjct: 454 MREGSTSGVDYITIVNILGSCLTHEDLIKYGIP-IHAHTVVTGFDLDQHVQSSLITMYAK 512

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G L  +    +++  K    VW A++ A + +G  E
Sbjct: 513 CGDLHSSSYIFDQLVFKTSS-VWNAIIAANARYGFGE 548



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 3/237 (1%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSK G +  A  +F+   E +  S   ++ G+ + G   EA+  F  +   GI+    M
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 361 VSAVLGVFGVDTSLGL-GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           +++++      + +   G Q H   IK     + FV    ++ Y+  G + ++ K+F+ M
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN VSW S++ +++ +G+  + +  Y+ M+ EG+   +     ++ +C  +  +  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           + L    +   +  +      ++ M G  G + EA S    M  + D + W +++ A
Sbjct: 181 QLLGHALKF-GLETKVSAANSLIFMFGGCGDINEACSIFNEMNER-DTISWNSIISA 235



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 41/194 (21%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSK G +  +  VF RM+ RN  SWN M++ + R G+  +A+  + ++   G++P+   
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 462 FLSLLHACSHVGLVNK-GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
             SL+ AC+   ++ K G +F                           G  I+       
Sbjct: 61  IASLVTACNKSSIMAKEGFQF--------------------------HGFAIKCG----- 89

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLFLAQPD-SPAPYILMANIYSCSGRWK 578
                  L++   +G   +H  +  G  + A+K+F   PD +   +  +   YS +G  K
Sbjct: 90  -------LIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKK 142

Query: 579 ERAKAIKRMKEMGV 592
           E     KRM+  G+
Sbjct: 143 EVINTYKRMRHEGI 156


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/561 (33%), Positives = 317/561 (56%), Gaps = 2/561 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + NSL++ Y+ C  + +A ++F   P ++ VSW  ++SG  +N  F      F R + 
Sbjct: 56  TFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVF-REMI 114

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G ++ +  + + +L A     L  ++K +HC     G+E  V V  AL+  Y K G   
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F  M  RNV+TW A++SG   +   EE + LF  M    +  +  T +S + A  
Sbjct: 175 VARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +  L  G  IHG + +   ++D  I++ALMD+Y     V+DA ++F      D  + T+
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTL 294

Query: 329 ILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           +L GF+     + A++ F KM+    +++D   +  +L       +L  G+++H+L IK+
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F +N FV + +I+MY+ CG+LED+ + F  M  ++ V WN+MIA    +G G  A++L+
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +MK  G++P + TF+S+L+ACSH G+V +G++    M +   + P  +HYACV+D++GR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGR 474

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L  A SFI  MP +PD  V+  LLGAC IHG+ ++G   ++K+F  +P+    Y+L+
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+Y+ +G W+        ++   + K+ G S IEI +++++F+  +K HPQ   I G+L
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGIL 594

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVPN   +L 
Sbjct: 595 KGLILKIKKAGYVPNTNVLLQ 615



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 221/446 (49%), Gaps = 30/446 (6%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKM--------IHCLVYLCGYEEEVTVGNALI 198
           +   FY+   ++ T  LS   +   S++ K+        IH  +   G      + N+L+
Sbjct: 4   VNFNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLM 63

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
            +Y  CG  +  +++F     +NV++WT +ISGL +N  + E + +F +M +G   PN++
Sbjct: 64  NAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAV 123

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T  S + A + L  +   + +H    +   + ++ +E+AL+DMYSK G +  A Q+FE  
Sbjct: 124 TISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESM 183

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            E + V+   I+ G++ +GF EEA+ LF  M + G+ +D   + +++        L +G 
Sbjct: 184 SERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGT 243

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            IH  II++ + ++  +   L+++Y     ++D+ +VFS M+ ++  +W  M+  F+   
Sbjct: 244 GIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGR 303

Query: 439 NGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           +  +A++ + +M  ++ ++   +  + +L +CSH G + +G         VH ++ +   
Sbjct: 304 HWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQG-------RRVHALAIKTCF 356

Query: 498 Y------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                  + V+DM    G L +A+ F   M  K DV+ W A++    ++G        A 
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAGNGMNGYGT----DAI 411

Query: 552 KLFLAQPDS---PAPYILMANIYSCS 574
            LFL    S   P     ++ +Y+CS
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACS 437



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  +  G    G  +HA  IKT             N   + ++++  Y  C  + +A 
Sbjct: 331 ILSSCSHSGALQQGRRVHALAIKTC----------FANNIFVGSAVIDMYANCGNLEDAK 380

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           + F  M  +D V WN M++G   NG        F +    G    D+++F  +L AC  +
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGL-DPDESTFVSVLYACSHA 439

Query: 170 EL 171
            +
Sbjct: 440 GM 441


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 309/575 (53%), Gaps = 2/575 (0%)

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
           E   +  ++ + +   +  +L+ FY KC  +  A +LF  M  RD V+WN M++G    G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
             D       +  E G    + ++   +L     ++     K +H       ++  V VG
Sbjct: 190 LCDDAVQLIMQMQEEGICP-NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLI 253
             L+  Y KC      RK+F  M VRN ++W+A+I G V +   +E L+LF +M L   +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAM 308

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           +P  +T  S + AC+ L  L  GR++H  + KL    D+ + + L+ MY+KCG ++DA +
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
            F+     D VS + I+ G  QNG    A+ +F  M  +GI+ D   +  VL       +
Sbjct: 369 FFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G   H  +I   F ++  + N LI+MYSKCG +  + +VF+RM   + VSWN+MI  
Sbjct: 429 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG G +AL L+ ++   G++P D+TF+ LL +CSH GLV +G  +  +M+    I P
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 548

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           R EH  C+VD++GRAGL+ EA  FI  MP +PDV +W ALL AC IH + E+G+  ++K+
Sbjct: 549 RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P+S   ++L++NIYS +GRW + A      K+ G+ K  G SWIEI   VH+FV  
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGG 668

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ H Q   I+  L ELL  M   GY     F+  
Sbjct: 669 DQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQ 703



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 238/460 (51%), Gaps = 5/460 (1%)

Query: 84  NVPNA-TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           N  NA + + + L   YL C+Q+  A +LFD++P    + WN ++  +  NG FD     
Sbjct: 37  NTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDL 96

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           +   L LG  + ++ ++  +L AC           IH    + G E +V V  AL+  Y 
Sbjct: 97  YHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG     +++F  M  R+V+ W A+I+G     L ++ ++L ++M    I PNS T + 
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVG 215

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +      +AL  G+ +HG   + +  + + + + L+DMY+KC  +  A +IF+     +
Sbjct: 216 VLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            VS + ++ G+  +   +EA++LF +M+ K  ++  P  + +VL      T L  G+++H
Sbjct: 276 EVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             IIK     +  + N L++MY+KCG ++D+I+ F  M P++SVS++++++   ++GN  
Sbjct: 336 CYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAA 395

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL ++  M+L G++P   T L +L ACSH+  +  G      +  V   +        +
Sbjct: 396 VALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNAL 454

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +DM  + G +  AR    RM  + D++ W A++    IHG
Sbjct: 455 IDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHG 493



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 201/387 (51%), Gaps = 5/387 (1%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L AC +S+    +K IH          + +V + L   Y  C      R++F E+   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           VI W  +I     N  ++  + L+  M HLG + PN  TY   + ACSGL A+ +G +IH
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                  L+SD+ + +AL+D Y+KCG + +A ++F      D V+   ++ G +  G  +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +A+QL ++M + GI  + + +  VL   G   +LG GK +H   ++  F +   V  GL+
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTD 459
           +MY+KC  L  + K+F  M  RN VSW++MI  +       +ALEL+++M L + ++PT 
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTP 312

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VT  S+L AC+ +  +++G +    + ++  +         ++ M  + G++ +A  F +
Sbjct: 313 VTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT-LLSMYAKCGVIDDAIRFFD 371

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMG 546
            M  K D + + A++  C  +G++ + 
Sbjct: 372 XMNPK-DSVSFSAIVSGCVQNGNAAVA 397



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 28/329 (8%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
            YL  + AC   ++L E ++IH    K    +D  +   L  +Y  C  V  A ++F+  
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSL 374
                +    I+  +A NG  + A+ L+  M+  G+  +    P ++ A  G+  ++   
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED-- 127

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G +IHS        S+ FV   L++ Y+KCG L ++ ++FS M+ R+ V+WN+MIA  
Sbjct: 128 --GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGC 185

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           + +G    A++L  +M+ EG+ P   T + +L        +  G         +H    R
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-------KALHGYCVR 238

Query: 495 AEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
                 VV      DM  +   L+ AR   + M V+ +V  W A++G    +  S+  K 
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEV-SWSAMIGG---YVXSDCMKE 294

Query: 549 AAE---KLFLAQPDSPAPYILMANIYSCS 574
           A E   ++ L     P P  L + + +C+
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACA 323


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 313/578 (54%), Gaps = 47/578 (8%)

Query: 77  FDN--QNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           FD+  Q  Y +P   V+ WNS++     C  +  A KLFD+MP R  VSW TM++GFL+ 
Sbjct: 42  FDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQF 101

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G+ ++  G F +   + F                                      ++  
Sbjct: 102 GKIEVAEGLFYK---MPF-------------------------------------RDIAA 121

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL- 252
            N++I  Y   G    G ++F EM  RNVI+WT++I GL Q+   EE L LF +M +G  
Sbjct: 122 WNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM-MGCG 180

Query: 253 --INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             + P S TY   + AC+   AL +G QIH  ++KL    D  I +AL+  Y+ C  +ED
Sbjct: 181 VEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMED 240

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           + ++F     ++ V  T ++ G+  N   E+A+++F +M++ G+  + +  ++ L     
Sbjct: 241 SLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCG 300

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             +L  G++IH+  +K    ++ FV N LI MY +CG+L D + +F R++ +N VSWNS+
Sbjct: 301 LEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSV 360

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I   A+HG G  AL  + +M    VEP ++TF  LL ACSH G+  KG    K  +E   
Sbjct: 361 IVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKS 420

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
              + +HYAC+VD++GR+G L EA   I  MPVK + +VW  LL AC++H   E+ + AA
Sbjct: 421 AEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAA 480

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           + +   +P   + Y+L++N+Y+ + RW + ++  + MK+ G+ K+ G SWI I+   + F
Sbjct: 481 KCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEF 540

Query: 611 VVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +  D+ HP +D I+  L  L   + + GYVP++RF LH
Sbjct: 541 LSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALH 578



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 197/464 (42%), Gaps = 86/464 (18%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           +IT + +       R VF ++   +V  +T +I+G  +N  ++  L+LF +M +     +
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV----KD 56

Query: 257 SLTYLSSVMACSGLQALCEGRQI----------------------------HGILWKLAL 288
            +++ S +  C     L   R++                             G+ +K+  
Sbjct: 57  VVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF 116

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + D+   ++++  Y   G VED  ++F+     + +S T ++ G  Q+G  EEA+ LF +
Sbjct: 117 R-DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 349 MVKAGIEIDP--NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           M+  G+E+ P  +    V+      ++L  G QIH+ + K  ++ + +++  LI  Y+ C
Sbjct: 176 MMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANC 235

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
             +EDS++VF      N V W +++  +  +     AL+++ EM  EGV P   +F S L
Sbjct: 236 KQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSAL 295

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPR--------------AEHYAC------------ 500
           ++C        G+E L    E+H  + +                +Y C            
Sbjct: 296 NSCC-------GLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKR 348

Query: 501 -----------VVDMVGRAGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEMG 546
                      V+    + G  + A +F  +M    V+PD + +  LL ACS  G S+ G
Sbjct: 349 ISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKG 408

Query: 547 KYAAEKLFLAQPDSPAP---YILMANIYSCSGRWKERAKAIKRM 587
           +    K F     +      Y  M +I   SG+ +E  + I+ M
Sbjct: 409 R-CLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNM 451


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/570 (34%), Positives = 313/570 (54%), Gaps = 16/570 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + N+LL+ Y KC  + +A ++F  M   R+ +SW+ M      +G        F+  L L
Sbjct: 95  VSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLL 154

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G      A  TI LSAC    L    +MIH  + L G+E E+ V NA++T Y +CG+   
Sbjct: 155 GIKATKSAMVTI-LSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEE 213

Query: 210 GRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            RKVF  M   +R+V++W  ++S  V N   ++ ++L+ +M L    P+ +TY+S + AC
Sbjct: 214 ARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQL---RPDKVTYVSLLSAC 270

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S  + +  GR +H  +    L+ ++ + +AL+ MY+KCGS  +A  +F+  E+   +S T
Sbjct: 271 SSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWT 330

Query: 328 VILVGFAQNGFEEEAMQLFVKMVK-----AGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            I+  + +     EA  LF +M++     +   + P+ ++   +L      ++L  GK +
Sbjct: 331 TIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMV 390

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
                    +S+  V   ++N+Y KCG++E++ ++F  +  R  V  WN+MIA +A+ G 
Sbjct: 391 SEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ 450

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-EHY 498
             +AL+L+  M++EGV P   +F+S+L ACSH GL ++G  +  SMT  +R   R  +H+
Sbjct: 451 SHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHF 510

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            CV D++GR G L EA  F+E++PVKPD + W +LL AC  H D +  K  A KL   +P
Sbjct: 511 GCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEP 570

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
                Y+ ++NIY+   +W   AK  K M E GV KE G+S IEI K +H F   D  HP
Sbjct: 571 RCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHP 630

Query: 619 QADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +   I   LA+L   M + GYVP+ + +LH
Sbjct: 631 RNREIREELAKLHSQMKECGYVPDTKMVLH 660



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 240/481 (49%), Gaps = 29/481 (6%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y  CD   +A   FD +  R+  SW  +V+ F  +G+        +R  + G  + D  
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGV-RPDAV 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F   L +C   E       IH +V     E +  V NAL+  Y KCGS S  ++VF +M
Sbjct: 60  TFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKM 119

Query: 218 -RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
            R RNVI+W+ +      +    E L+ F  M L  I       ++ + ACS    + +G
Sbjct: 120 ERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG 179

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFA 334
           R IH  +     +S+L + +A+M MY +CG+VE+A ++F+  +E   D VS  ++L  + 
Sbjct: 180 RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYV 239

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            N   ++A+QL+ +M     ++ P+ V+ V  L        +GLG+ +H  I+  +   N
Sbjct: 240 HNDRGKDAIQLYQRM-----QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKN 294

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-K 451
             V N L++MY+KCG   ++  VF +M  R+ +SW ++I+A+ R     +A  L+++M +
Sbjct: 295 VIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLE 354

Query: 452 LEG------VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           LE       V+P  + F+++L+AC+ V  + +G    +        S +A   A VV++ 
Sbjct: 355 LEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTA-VVNLY 413

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL------AQPD 559
           G+ G + EAR   + +  +PDV +W A++   +  G S    + A KLF        +PD
Sbjct: 414 GKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQS----HEALKLFWRMEMEGVRPD 469

Query: 560 S 560
           S
Sbjct: 470 S 470



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L+S Y KC     A  +FD M  R  +SW T++S ++R          F++ LEL
Sbjct: 296 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 150 ---GFYQL---DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
              G  Q    D  +F  IL+AC         KM+      CG   +  VG A++  Y K
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGK 415

Query: 204 CGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           CG     R++F  +  R +V  W A+I+   Q     E LKLF +M +  + P+S +++S
Sbjct: 416 CGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVS 475

Query: 263 SVMACS 268
            ++ACS
Sbjct: 476 ILLACS 481


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 209/614 (34%), Positives = 334/614 (54%), Gaps = 19/614 (3%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S L LD +   S  LS+  +     LG  +HA             V  +    ++ NSL+
Sbjct: 114 SDLRLDKFT-FSNALSVCGRTLDLRLGRLIHALI----------TVSGLGGPVLLTNSLI 162

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y KC ++  A  +F+     D+VSWN++++G++R G  D       + L  G   L+ 
Sbjct: 163 DMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL-NLNS 221

Query: 157 ASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
            +    L AC  +  S +   KM+H      G + +V VG AL+ +Y K G      K+F
Sbjct: 222 YALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIF 281

Query: 215 GEMRVRNVITWTAVISGLVQ-----NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             M   NV+ + A+I+G +Q     ++   E + LF +M    + P+  T+ S + ACS 
Sbjct: 282 KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACST 341

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++A   G+QIH  ++K  LQSD  I +AL+++YS  GS+ED  + F    +LD VS T +
Sbjct: 342 IEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSL 401

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +VG  QNG  E  + LF +++ +G + D   +S +L       ++  G+QIH+  IK+  
Sbjct: 402 IVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGI 461

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +   + N  I MY+KCGD++ +   F      + VSW+ MI++ A+HG   +A++L+E 
Sbjct: 462 GNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL 521

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  G+ P  +TFL +L ACSH GLV +G+ + + M + H I+P  +H AC+VD++GRAG
Sbjct: 522 MKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAG 581

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA SFI     + D ++W++LL AC +H  ++ GK  AE++   +P++ A Y+L+ N
Sbjct: 582 RLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYN 641

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +G      +    MK+ GV KE G+SWIE+   VHSFV  D+ HP +  I+  L E
Sbjct: 642 IYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEE 701

Query: 630 LLRLMIDEGYVPNK 643
           +L  +    Y+  K
Sbjct: 702 MLEEIKKLDYIDEK 715



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 175/625 (28%), Positives = 287/625 (45%), Gaps = 50/625 (8%)

Query: 30  QDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNA 88
            +P      L LD+ V  ++L+  S + G    G   H   IKT F+P            
Sbjct: 6   HNPQPYYLGLPLDS-VTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKP-----------C 53

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
             + N+LL  Y KC +   A KLFD MP R+ VSWN+++SG+ + G +      FK +  
Sbjct: 54  LFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEA-R 112

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +   +LD+ +F+  LS C R+    + ++IH L+ + G    V + N+LI  Y KCG   
Sbjct: 113 MSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRID 172

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC- 267
             R VF      + ++W ++I+G V+    +E L+L VKM    +N NS    S++ AC 
Sbjct: 173 WARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG 232

Query: 268 SGLQALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           S   +  E G+ +HG   KL L  D+ + +AL+D Y+K G +EDA +IF+   + + V  
Sbjct: 233 SNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY 292

Query: 327 TVILVGFAQ-----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
             ++ GF Q     + F  EAM LF +M   G++      S++L       +   GKQIH
Sbjct: 293 NAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIH 352

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + I K +  S+ F+ N L+ +YS  G +ED +K F      + VSW S+I    ++G   
Sbjct: 353 AQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFE 412

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF--LKSMTEVHRISPRAEHYA 499
             L L+ E+   G +P + T   +L AC+++  V  G +       T +   +       
Sbjct: 413 GGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQI 472

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+    G     I++ +   +    PD++ W  ++ + + HG     K A +   L +  
Sbjct: 473 CMYAKCGD----IDSANMTFKETKNPDIVSWSVMISSNAQHG---CAKEAVDLFELMKGS 525

Query: 560 SPAP--YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
             AP     +  + +CS                G   E G+ + EI K+ H    + K  
Sbjct: 526 GIAPNHITFLGVLVACS---------------HGGLVEEGLRYFEIMKKDHGITPNVKHS 570

Query: 618 PQADTI---HGVLAELLRLMIDEGY 639
                +    G LAE    ++D G+
Sbjct: 571 ACIVDLLGRAGRLAEAESFIMDSGF 595


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 315/564 (55%), Gaps = 13/564 (2%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV-SWNTMVSGFLRNGEFDMGFGFFKR 145
           N+ +   SL++ Y KC+QM  A+ +F D      V ++N ++SGF+ NG  + GF F+++
Sbjct: 70  NSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQK 129

Query: 146 SLELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               G    D+ +F   + AC D  E+    K IH L++  G E +V +G+AL+  Y K 
Sbjct: 130 MRNEGVIP-DKFTFPCAIKACLDVLEI----KKIHGLLFKFGLELDVFIGSALVNCYLKF 184

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     +  F E+ +R+V+ W A+++G  Q   +E  L+ F +M+   + P+  T    +
Sbjct: 185 GLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVL 244

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              + +  L  GR IHG   K+   S + + ++L+DMY KC  +EDA +IFE   E D  
Sbjct: 245 SVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIF 304

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   I+    Q G  +  ++L  +M+ AGI+ D   V+ VL       +L  G++IH  +
Sbjct: 305 SWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYM 364

Query: 385 IKSDF------TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           I S          +  + N +I+MY+KCG + D+  VF RM+ ++  SWN MI  +  HG
Sbjct: 365 IVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHG 424

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            G +ALE++  M    ++P +VTF+ +L ACSH G V++G  FL  M   + ++P  EHY
Sbjct: 425 YGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHY 484

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            CV+DM+GRAG L EA      MP++ + +VW+ALL AC +H  + + + AA+++F  +P
Sbjct: 485 TCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP 544

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
           +    Y+LM+N+Y   GR++E  +    M++  V K  G SWIE++  VH FV  D+ HP
Sbjct: 545 EHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHP 604

Query: 619 QADTIHGVLAELLRLMIDEGYVPN 642
           +A +I+  L  L   + + GYVP+
Sbjct: 605 EAHSIYAGLNSLTARLREHGYVPD 628



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 182/373 (48%), Gaps = 12/373 (3%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE-MRVRNVITWTAVISGLVQ 234
           K IH  + + G+        +LI  Y KC   +    +F +     NV  + A+ISG + 
Sbjct: 57  KEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFIT 116

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N   EEG + + KM    + P+  T+  ++ AC  L  L E ++IHG+L+K  L+ D+ I
Sbjct: 117 NGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC--LDVL-EIKKIHGLLFKFGLELDVFI 173

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL++ Y K G +E A   FE     D V    ++ G+AQ G  E  ++ F +M    +
Sbjct: 174 GSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESV 233

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
                 V+ VL VF V   L  G+ IH   +K  + S   V+N LI+MY KC  +ED+++
Sbjct: 234 VPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALE 293

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  ++  SWNS+++   + G+    L L + M   G++P  VT  ++L ACSH+  
Sbjct: 294 IFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAA 353

Query: 475 VNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           +  G E    M  V  +    +          V+DM  + G + +A    ERM  K DV 
Sbjct: 354 LMHGREIHGYMI-VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK-DVA 411

Query: 529 VWQALLGACSIHG 541
            W  ++    +HG
Sbjct: 412 SWNIMIMGYGMHG 424



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 10/176 (5%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMI 431
           +L  GK+IHS ++ + F ++P     LINMYSKC  +  ++ +FS      N  ++N++I
Sbjct: 52  NLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK--GMEFLKSMTEVH 489
           + F  +G   +  E Y++M+ EGV P   TF   + AC  V  + K  G+ F K   E+ 
Sbjct: 112 SGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLF-KFGLELD 170

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
                A     +V+   + GL+  A+   E +P++ DV++W A++   +  G  EM
Sbjct: 171 VFIGSA-----LVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEM 220


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/551 (35%), Positives = 308/551 (55%), Gaps = 7/551 (1%)

Query: 95   LLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            L+S Y KC  +  A  +F +MP+  R  V+WN M+  + +N      FG     L+ G  
Sbjct: 479  LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 153  QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              D  SFT +LS+C  S+ + V +M  C++   GY     +  ALI+ + +C      R 
Sbjct: 539  P-DALSFTSVLSSCYCSQEAQVLRM--CILE-SGYRS-ACLETALISMHGRCRELEQARS 593

Query: 213  VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            VF EM   +V++WTA++S   +N+ ++E   LF +M L  + P+  T  +++  C     
Sbjct: 594  VFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTT 653

Query: 273  LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            L  G+ IH  + ++ L++D+ +E+AL++MYS CG   +A   FE  +  D VS  ++   
Sbjct: 654  LGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAA 713

Query: 333  FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +AQ G  +EA+ LF +M   G++ D    S  L V G    +  GK  H+L  +S   S+
Sbjct: 714  YAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSD 773

Query: 393  PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
              V  GL+ +Y+KCG L++++ +F        V  N++I A A+HG   +A++++ +M+ 
Sbjct: 774  VSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQ 833

Query: 453  EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            EGV P   T +S++ AC H G+V +G     +M E   ISP  EHYAC VD++GRAG L 
Sbjct: 834  EGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLE 893

Query: 513  EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
             A   I +MP + + LVW +LLG C + GD+E+G+  A+++    P + A +++++NIY 
Sbjct: 894  HAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYC 953

Query: 573  CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             +G+WK+     K+M +  V    G+SW EI KQVH FV  D+ HP+ D I+ VL +L  
Sbjct: 954  ATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLEL 1013

Query: 633  LMIDEGYVPNK 643
            LM   GY  +K
Sbjct: 1014 LMRRAGYEADK 1024



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 232/459 (50%), Gaps = 22/459 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y++C  +  A  +F  M  R+ VSW  ++S   + G F   F  F+  L     
Sbjct: 64  NCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSA 123

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT----VGNALITSYFKCGSSS 208
             +  +   +L+AC  S    + + IH +++  G E   T    VGNA+I  Y KCGS  
Sbjct: 124 APNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLE 183

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               VF  +  ++V++WTA+     Q  + Y + L++F +M L  + PN +T+++++ AC
Sbjct: 184 DAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGAC 243

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF---AEELDGV 324
           + L+   +G  +H +L + +L  D    +AL++MY KCG  E A+ +F+     +ELD V
Sbjct: 244 TSLR---DGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLV 300

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV-----LGVFGVDTSLGLGKQ 379
           S   ++    + G   +AM +F ++   G+   PN V+ +     L   GVD   G  + 
Sbjct: 301 SWNAMISASVEAGRHGDAMAIFRRLRLEGMR--PNSVTLITILNALAASGVD--FGAARG 356

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHG 438
            H  I +S +  +  + N +I+MY+KCG    +  VF R+  + + +SWN+M+ A     
Sbjct: 357 FHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRK 416

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +  K +  +  M L G++P  V+F+++L+ACS+   ++ G +    +    R    +   
Sbjct: 417 SFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVA 476

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLV-WQALLGA 536
             +V M G+ G + EA    + MP+    LV W  +LGA
Sbjct: 477 TMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/405 (32%), Positives = 210/405 (51%), Gaps = 26/405 (6%)

Query: 150 GFYQLDQAS----FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           G  ++D+A+    +T +L +C  S      K  H L+   G E+ + +GN LI  Y +CG
Sbjct: 15  GAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCG 74

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSV 264
           S      +F +M  RNV++WTA+IS   Q   +     LF  M L     PNS T ++ +
Sbjct: 75  SLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAML 134

Query: 265 MACSGLQALCEGRQIHGILWKLALQ----SDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            AC+  + L  GR IH ++W+L L+    +   + +A+++MY+KCGS+EDA  +F    E
Sbjct: 135 NACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPE 194

Query: 321 LDGVSMTVILVGFAQ-NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
            D VS T +   +AQ   F  +A+++F +M+     + PN+++ +  + G  TSL  G  
Sbjct: 195 KDVVSWTAMAGAYAQERRFYPDALRIFREMLLQ--PLAPNVITFITAL-GACTSLRDGTW 251

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS---VSWNSMIAAFAR 436
           +HSL+ ++    +P  +N LINMY KCGD E +  VF  MA R     VSWN+MI+A   
Sbjct: 252 LHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVE 311

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G    A+ ++  ++LEG+ P  VT +++L+A     L   G++F  +     RI     
Sbjct: 312 AGRHGDAMAIFRRLRLEGMRPNSVTLITILNA-----LAASGVDFGAARGFHGRIWESGY 366

Query: 497 HYACV-----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
               V     + M  + G    A +   R+  K DV+ W  +LGA
Sbjct: 367 LRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 222/474 (46%), Gaps = 37/474 (7%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            AT++ N++++ Y KC  + +A+ +F  +P +D VSW  M   + +   F        R 
Sbjct: 164 TATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFRE 223

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L     +  +F   L AC           +H L++      +    NALI  Y KCG 
Sbjct: 224 MLLQPLAPNVITFITALGACTSLR---DGTWLHSLLHEASLGFDPLASNALINMYGKCGD 280

Query: 207 SSSGRKVFGEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS- 262
                 VF  M  R   ++++W A+IS  V+   + + + +F ++ L  + PNS+T ++ 
Sbjct: 281 WEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITI 340

Query: 263 -SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-E 320
            + +A SG+      R  HG +W+     D+ I +A++ MY+KCG    AW +F     +
Sbjct: 341 LNALAASGVD-FGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWK 399

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGK 378
            D +S   +L          + +  F  M+ AG  IDPN VS  A+L       +L  G+
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG--IDPNKVSFIAILNACSNSEALDFGR 457

Query: 379 QIHSLII--KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAF 434
           +IHSLI+  + D+  +  V   L++MY KCG + ++  VF  M    R+ V+WN M+ A+
Sbjct: 458 KIHSLILTRRRDYVESS-VATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAY 516

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A++    +A     EM   GV P  ++F S+L +C           +     +V R+   
Sbjct: 517 AQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC-----------YCSQEAQVLRMCIL 565

Query: 495 AEHY--AC----VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
              Y  AC    ++ M GR   L +ARS    M    DV+ W A++ A + + D
Sbjct: 566 ESGYRSACLETALISMHGRCRELEQARSVFNEMD-HGDVVSWTAMVSATAENRD 618



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 176/353 (49%), Gaps = 9/353 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +L+S + +C ++  A  +F++M   D VSW  MVS    N +F      F+R ++L   
Sbjct: 576 TALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRR-MQLEGV 634

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +    L  C  S    + K+IH  V   G E ++ V NAL+  Y  CG       
Sbjct: 635 IPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALS 694

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  M+ R++++W  + +   Q  L +E + LF +M L  + P+ LT+ +++    G   
Sbjct: 695 FFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSAL 754

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           + +G+  H +  +  L SD+ + + L+ +Y+KCG +++A  +F  A +   V +  I+  
Sbjct: 755 VSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGA 814

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS--LIIKSDFT 390
            AQ+GF EEA+++F KM + G+  D   + +++   G     G+ ++  S  L +K  F 
Sbjct: 815 LAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG---HAGMVEEGCSSFLTMKEYFG 871

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNG 440
            +P + +    +++  + G LE + ++  +M    N++ W S++      G+ 
Sbjct: 872 ISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDA 924



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 17/278 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL+ Y  C   R A+  F+ M  RD VSWN M + + + G        F R ++L   
Sbjct: 677 NALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLF-RQMQLEGV 735

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ +F+  L+    S L    K+ H L    G + +V+V   L+  Y KCG       
Sbjct: 736 KPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMS 795

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F       V+   A+I  L Q+   EE +K+F KM    + P+  T +S + AC     
Sbjct: 796 LFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGM 855

Query: 273 LCEG-------RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           + EG       ++  GI     L+   C     +D+  + G +E A QI       D   
Sbjct: 856 VEEGCSSFLTMKEYFGI--SPTLEHYAC----FVDLLGRAGQLEHAEQIIRKMPFEDNTL 909

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           +   L+G  +   + E  +   + +   +E+DP+  +A
Sbjct: 910 VWTSLLGTCKLQGDAELGERCAQRI---LELDPHNSAA 944


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 227/718 (31%), Positives = 361/718 (50%), Gaps = 117/718 (16%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEP-------------------F 77
           +L+ + Y +  +L S       F L  ++HA  I + F+P                   +
Sbjct: 8   RLLANRYAEKLQLCS-PQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVY 66

Query: 78  DNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNG 134
             Q    +PN   I   +L++ Y     +    ++F+  P  MRD+V +N M++G+  NG
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSA----------CDRSELSLVSKMIHCLVYL 184
           +       F R++    ++ D  +FT +LSA          C +   ++V   + C+   
Sbjct: 127 DGHSALELF-RAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCV--- 182

Query: 185 CGYEEEVTVGNALITSYFK--------CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
                  +V NAL++ Y K        C +  S RK+F EM  R+ +TWT +I+G V+N 
Sbjct: 183 -----SSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237

Query: 237 -------------------------------LYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                                           ++E L L  KM    I  + +TY + + 
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297

Query: 266 ACSGLQALCEGRQIHGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIF------ 315
           AC+ + +   G+Q+H  + K  L  +    L + +AL+ +Y K   V++A +IF      
Sbjct: 298 ACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357

Query: 316 ----------------------EFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
                                  F EE+   + +++TV++ G AQNGF +E ++LF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             G E      +  L    V  +L  G+Q+H+ ++   + S+  V N +I+MY+KCG +E
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVE 477

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  VF  M   + VSWNSMIAA  +HG+G KA+EL+++M  EGV P  +TFL++L ACS
Sbjct: 478 AAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACS 537

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV KG  +  SM E + I+P  +HYA +VD+  RAG+   AR  I+ MP KP   VW
Sbjct: 538 HAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVW 597

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           +ALL  C IHG+ ++G  AAE+LF   P +   Y+L++NIY+  GRW + AK  K M++ 
Sbjct: 598 EALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQ 657

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            V KE   SWIE+E +VH F+VDD +HP+  +++  L +L   M   GY+P+ +F+LH
Sbjct: 658 AVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLH 715


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 314/556 (56%), Gaps = 7/556 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y KC QM +AVK+F + P  D V W ++++G+ +NG  ++   FF R + L 
Sbjct: 141 VGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLE 200

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +     SAC +     + + +H  V   G++ ++ + N+++  Y K GS    
Sbjct: 201 QVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIA 260

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F EM  +++I+W+++++    N      L LF +M    I  N +T +S++ AC+  
Sbjct: 261 ANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASS 320

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L EG+QIH +      + D+ + +ALMDMY KC S E+A ++F    + D VS  V+ 
Sbjct: 321 SNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLF 380

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIKS 387
            G+A+ G   +++ +F  M+  G   D     A++ +    + LG+ +Q   +H+ + KS
Sbjct: 381 SGYAEIGMAHKSLGVFCNMLSNGTRPD---AIALVKILAASSELGIVQQALCLHAFVTKS 437

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F +N F+   LI +Y+KC  ++++ KVF  +   + V+W+S+IAA+  HG G +AL+L 
Sbjct: 438 GFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLS 497

Query: 448 EEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            +M     V+P DVTF+S+L ACSH GL+ +G++    M   +++ P  EHY  +VD++G
Sbjct: 498 HQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLG 557

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R G L +A   I  MP++    VW ALLGAC IH + ++G+ AA  LFL  P+    Y L
Sbjct: 558 RMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTL 617

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NIY     W + AK    +KE  + K  G S +EI+ +VHSF+  D+ H ++D I+ +
Sbjct: 618 LSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYEM 677

Query: 627 LAELLRLMIDEGYVPN 642
           L +L   M +EGY P+
Sbjct: 678 LRKLDARMREEGYDPD 693



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 222/450 (49%), Gaps = 6/450 (1%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--SLELGFYQLD 155
            Y +   + +A KLF++ P +    WN ++  +   G++      F +  +  +   + D
Sbjct: 45  LYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPD 104

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             + +I L +C   +   + KMIH  +     + ++ VG+ALI  Y KCG  +   KVF 
Sbjct: 105 NYTVSIALKSCSGLQKLELGKMIHGFLKK-KIDSDMFVGSALIELYSKCGQMNDAVKVFT 163

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALC 274
           E    +V+ WT++I+G  QN   E  L  F +M  L  ++P+ +T +S+  AC+ L    
Sbjct: 164 EYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFN 223

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            GR +HG + +    + LC+ ++++++Y K GS+  A  +F      D +S + ++  +A
Sbjct: 224 LGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYA 283

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            NG E  A+ LF +M+   IE++   V + L      ++L  GKQIH L +   F  +  
Sbjct: 284 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDIT 343

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V+  L++MY KC   E++I++F+RM  ++ VSW  + + +A  G   K+L ++  M   G
Sbjct: 344 VSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNG 403

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
             P  +  + +L A S +G+V + +  L +              A ++++  +   +  A
Sbjct: 404 TRPDAIALVKILAASSELGIVQQAL-CLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNA 462

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               + +    DV+ W +++ A   HG  E
Sbjct: 463 NKVFKGLR-HTDVVTWSSIIAAYGFHGQGE 491



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 173/359 (48%), Gaps = 30/359 (8%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN---PNS 257
           Y +  S     K+F E   + V  W A++        + E L LF +M+   +    P++
Sbjct: 46  YARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDN 105

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
            T   ++ +CSGLQ L  G+ IHG L K  + SD+ + SAL+++YSKCG + DA ++F  
Sbjct: 106 YTVSIALKSCSGLQKLELGKMIHGFL-KKKIDSDMFVGSALIELYSKCGQMNDAVKVFTE 164

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGL 376
             + D V  T I+ G+ QNG  E A+  F +MV    +  DP  + +        +   L
Sbjct: 165 YPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNL 224

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+ +H  + +  F +   + N ++N+Y K G +  +  +F  M  ++ +SW+SM+A +A 
Sbjct: 225 GRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYAD 284

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G    AL L+ EM  + +E   VT +S L AC+    + +G        ++H++   A 
Sbjct: 285 NGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEG-------KQIHKL---AV 334

Query: 497 HYACVVDMVGRAGLLI---------EARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           +Y   +D+     L+           A     RMP K DV+ W  L       G +E+G
Sbjct: 335 NYGFELDITVSTALMDMYLKCFSPENAIELFNRMP-KKDVVSWAVLFS-----GYAEIG 387



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 88/202 (43%), Gaps = 12/202 (5%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+HS  +K     + FV   L  +Y++   L  + K+F     +    WN+++ ++   G
Sbjct: 22  QLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 439 NGFKALELYEEMKLEGV---EPTDVTFLSLLHACSHVGLVNKGM---EFLKSMTEVHRIS 492
              + L L+ +M  + V    P + T    L +CS +  +  G     FLK   +     
Sbjct: 82  KWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKIDSDMFV 141

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
             A     ++++  + G + +A       P KPDV++W +++     +G  E+      +
Sbjct: 142 GSA-----LIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGSPELALAFFSR 195

Query: 553 LFLAQPDSPAPYILMANIYSCS 574
           + + +  SP P  L++   +C+
Sbjct: 196 MVVLEQVSPDPVTLVSAASACA 217


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 316/556 (56%), Gaps = 12/556 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M  A K+FD++P R+ VSW T+++G++ + + ++    F+  LE G Y  
Sbjct: 110 LVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPT 169

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +    T + ++ D     L  K IH        E + ++GN+L + Y KCGS     K F
Sbjct: 170 NYTLGTALSASSDLHSKEL-GKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAF 228

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +R +NVI+WT VIS    N     GL+ FV+M    + PN  T  S++  C  +Q+L 
Sbjct: 229 RRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLD 288

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG-- 332
            G QIH +  KL  +S+L I++++M +Y KCG + +A ++F+  E +  V+   ++ G  
Sbjct: 289 IGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHA 348

Query: 333 ----FAQNGFE-----EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
               FA++         EA+ +F+K+ ++G++ D    S+VL V     +L  G+Q+H+ 
Sbjct: 349 RMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQ 408

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            IK+ F S+  V   L+NMY+KCG +E + K F  M+ R  +SW SMI  +A++G   +A
Sbjct: 409 TIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQA 468

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+E+M+L GV P  +TF+ +L ACSH G+V++ +++ + M   ++I+P  +HYAC++D
Sbjct: 469 LLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLID 528

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M  R G L EA  FI+ M ++P+  +W  L+  C   G  E+G YAAE+L   +P     
Sbjct: 529 MFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTET 588

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y L+ N+Y  +G+WKE ++  K MKE  + +    SWI I+ +++SF  + + H Q+  +
Sbjct: 589 YNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEM 648

Query: 624 HGVLAELLRLMIDEGY 639
           + +L  L       GY
Sbjct: 649 YELLGNLHEKAKSFGY 664



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 215/416 (51%), Gaps = 15/416 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++ A +  IL  C   +L   ++ IH  +   G  ++  +   L+  Y KCG+  + RK
Sbjct: 66  KVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARK 125

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  RNV++WT +++G V +   E  +++F +M      P + T  +++ A S L +
Sbjct: 126 VFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHS 185

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+QIHG   K  ++ D  I ++L  +YSKCGS+E A + F    + + +S T ++  
Sbjct: 186 KELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISA 245

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  NG     +Q FV+M+   +E +   +++ L +  V  SL +G QIHSL IK  F SN
Sbjct: 246 WGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESN 305

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR-----------HGNGF 441
             + N ++ +Y KCG + ++ K+F  M   + V+WN+MIA  AR           H  G 
Sbjct: 306 LPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGT 365

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL ++ ++   G++P   TF S+L  CS +  + +G +      +   +S      A +
Sbjct: 366 EALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTA-L 424

Query: 502 VDMVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           V+M  + G +  A ++F+E M ++  ++ W +++   + +G  +      E + LA
Sbjct: 425 VNMYNKCGSIERASKAFVE-MSIRT-LISWTSMITGYAQNGQPQQALLLFEDMRLA 478



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 213/443 (48%), Gaps = 39/443 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NY  +   LS S+      LG  +H   IK    FD            I NSL S Y KC
Sbjct: 170 NYT-LGTALSASSDLHSKELGKQIHGYSIKYRIEFDAS----------IGNSLCSLYSKC 218

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  AVK F  +  ++ +SW T++S +  NGE   G  FF   L     + ++ + T  
Sbjct: 219 GSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLS-ECVEPNEFTLTSA 277

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LS C   +   +   IH L    G+E  + + N+++  Y KCG     +K+F EM   ++
Sbjct: 278 LSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISL 337

Query: 223 ITWTAVISG-----------LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +TW A+I+G           L  +Q   E L +F+K++   + P+  T+ S +  CS L 
Sbjct: 338 VTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLV 397

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G Q+H    K    SD+ + +AL++MY+KCGS+E A + F        +S T ++ 
Sbjct: 398 ALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMIT 457

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI--HSLIIKSDF 389
           G+AQNG  ++A+ LF  M  AG+   PN ++ V GV    +  G+  +   +  ++K+++
Sbjct: 458 GYAQNGQPQQALLLFEDMRLAGVR--PNKITFV-GVLSACSHAGMVDEALDYFQMMKNEY 514

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGN---GFKA 443
              P +++   LI+M+ + G L+++      M    N   W+ +IA     G    GF A
Sbjct: 515 KITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYA 574

Query: 444 LELYEEMKLEGVEPTDVTFLSLL 466
            E     +L  ++P D    +LL
Sbjct: 575 AE-----QLLNLKPKDTETYNLL 592


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 189/518 (36%), Positives = 300/518 (57%), Gaps = 12/518 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSLL+ Y+ C ++  A K+FD M  +  VSWNTM++G+ +NG  +     F + ++ G
Sbjct: 159 VLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSG 218

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV----TVGNALITSYFKCGS 206
             ++D AS   +L AC   +   V + +H LV     EE+V     V NAL+  Y KCGS
Sbjct: 219 V-EIDGASVVSVLPACGYLKELEVGRRVHGLV-----EEKVLGKKIVSNALVDMYAKCGS 272

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               R VF  M  R+V++WT++I+G + N   +  L LF  M +  + PNS+T    ++A
Sbjct: 273 MDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLA 332

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L  L +GR +HG + K  L S++ +E++L+DMY+KC  +  ++ +F        V  
Sbjct: 333 CASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPW 392

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L G   N    EA+ LF KM+  G+EI+    +++L  +G+   L     I+S +++
Sbjct: 393 NALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMR 452

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKAL 444
           S F SN  V   LI++YSKCG LE + K+F+ +    ++   W+ +IA +  HG+G  A+
Sbjct: 453 SGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAV 512

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L+++M   GV+P DVTF S+L +CSH G+V+ G+   K M + H+  P  +HY C+VD+
Sbjct: 513 SLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDL 572

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG + EA   I+ MP  P   VW ALLGAC +H + E+G+ AA  LF  +P +   Y
Sbjct: 573 LGRAGRMDEAYDLIKTMPFMPGHAVWGALLGACVMHENVELGEVAARWLFELEPGNTGNY 632

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           +L+A +Y+  GRW++     +RM ++G+ K    S IE
Sbjct: 633 VLLAKLYAALGRWEDAENVRQRMDDIGLRKAPAHSLIE 670



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 130/460 (28%), Positives = 230/460 (50%), Gaps = 13/460 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L++ Y  C  + NA KLFD++  R T+ +N M+  ++  G++      F   L   
Sbjct: 57  IRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSK 116

Query: 151 FYQLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               D  ++  ++ AC  SEL LV   +++H L  +  +   + V N+L+  Y  CG   
Sbjct: 117 DCCPDNYTYPFVIKAC--SELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVE 174

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             RKVF  M+ ++V++W  +I+G  +N      L +F +M    +  +  + +S + AC 
Sbjct: 175 EARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACG 234

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L+ L  GR++HG++ +  L   + + +AL+DMY+KCGS+++A  +F+   E D VS T 
Sbjct: 235 YLKELEVGRRVHGLVEEKVLGKKI-VSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTS 293

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+  NG  + A+ LF  M   G+  +   ++ +L       +L  G+ +H  ++K  
Sbjct: 294 MINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQR 353

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S   V   LI+MY+KC  L  S  VF+R + + +V WN++++    +    +A+ L++
Sbjct: 354 LYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFK 413

Query: 449 EMKLEGVEPTDVTFLSLLHA---CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +M +EGVE    T  SLL A    + +  VN    +L     V  I         ++D+ 
Sbjct: 414 KMLMEGVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATS----LIDIY 469

Query: 506 GRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSE 544
            + G L  A      +PV   D+ VW  ++    +HG  E
Sbjct: 470 SKCGSLESAHKIFNTIPVDVQDIFVWSIIIAGYGMHGHGE 509



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/349 (31%), Positives = 183/349 (52%), Gaps = 6/349 (1%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + + + L+ +Y  CG   + RK+F E+R R  + +  +I   +    Y E +K+F++M L
Sbjct: 55  IDIRSVLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEM-L 113

Query: 251 GLIN--PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
           G  +  P++ TY   + ACS L  +  GR +HG+       S L + ++L+ MY  CG V
Sbjct: 114 GSKDCCPDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEV 173

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
           E+A ++F+  +E   VS   ++ G+ +NGF   A+ +F +MV +G+EID   V +VL   
Sbjct: 174 EEARKVFDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPAC 233

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G    L +G+++H L ++        V+N L++MY+KCG ++++  VF  M  R+ VSW 
Sbjct: 234 GYLKELEVGRRVHGL-VEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWT 292

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           SMI  +  +G+   AL L++ M++EG+ P  VT   +L AC+ +  +  G   L      
Sbjct: 293 SMINGYILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDG-RCLHGWVMK 351

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
            R+         ++DM  +   L  + S   R   K  V  W ALL  C
Sbjct: 352 QRLYSEVAVETSLIDMYAKCNCLGLSFSVFTRTSRKKTV-PWNALLSGC 399



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 174/361 (48%), Gaps = 19/361 (5%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L+  Y KC  M  A  +FD+M  RD VSW +M++G++ NG+       FK  +++
Sbjct: 258 IVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSALSLFK-IMQI 316

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + +  +  +IL AC         + +H  V       EV V  +LI  Y KC     
Sbjct: 317 EGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEVAVETSLIDMYAKCNCLGL 376

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF     +  + W A++SG V N+L  E + LF KM +  +  N+ T  S + A   
Sbjct: 377 SFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATCNSLLPAYGI 436

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMT 327
           L  L     I+  L +    S++ + ++L+D+YSKCGS+E A +IF     +  D    +
Sbjct: 437 LADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTIPVDVQDIFVWS 496

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGK---QI 380
           +I+ G+  +G  E A+ LF +MV++G++ +    ++VL        VD  L L K   + 
Sbjct: 497 IIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDDGLYLFKFMLKD 556

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHG 438
           H  I   D  +       ++++  + G ++++  +   M   P ++V W +++ A   H 
Sbjct: 557 HQTIPNDDHYT------CMVDLLGRAGRMDEAYDLIKTMPFMPGHAV-WGALLGACVMHE 609

Query: 439 N 439
           N
Sbjct: 610 N 610


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 317/588 (53%), Gaps = 12/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG + HA  +KT +          P    ++N L++ Y K D + +A  + +  P R  V
Sbjct: 24  LGRAAHAQILKTLK---------TPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVV 74

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +W  +++G ++NG F      F   L     + +  +F  +L A     +    K +H L
Sbjct: 75  TWTALIAGSVQNGCFVSALLHFSDMLS-DCVRPNDFTFPCVLKASTGLRMDTTGKQLHAL 133

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G   +V VG ++   Y K G  +   KVF EM  RN+ TW A IS  V +   E+ 
Sbjct: 134 AVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDS 193

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +  F+++      P+S+T+ + + ACS    L  G Q+HG + +     ++ + + L+D 
Sbjct: 194 VIAFIELLRVGGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDF 253

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG VE +  +F+   E + VS + ++  + QN  EE+A  LF++  K  IE    MV
Sbjct: 254 YGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMV 313

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           S+VL      + +  G+ + +L +K+    N FV + L++MY KCG ++++ + F+ M  
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           RN VSWN+++  +A  G+  KA+ L EEM    G+ P+ V+ +  L ACS  G +  GM+
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             +SM E + + P  EHYAC+VD++GRAG++  A  FI+RMP  P + +W ALLGAC +H
Sbjct: 434 IFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMH 493

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           G  E+GK AAEKLF   P     +++++N+++ +GRW+E       MKE+G+ K  G SW
Sbjct: 494 GKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSW 553

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID-EGYVPNKRFIL 647
           I ++ ++H F   DK H +   I  +L +L + M D  G + +  + L
Sbjct: 554 ITVDSRIHMFQAKDKSHEKDPEIQDILGKLRKEMQDAAGCIADPNYAL 601


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 209/614 (34%), Positives = 334/614 (54%), Gaps = 19/614 (3%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S L LD +   S  LS+  +     LG  +HA             V  +    ++ NSL+
Sbjct: 35  SDLRLDKFT-FSNALSVCGRTLDLRLGRLIHALI----------TVSGLGGPVLLTNSLI 83

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y KC ++  A  +F+     D+VSWN++++G++R G  D       + L  G   L+ 
Sbjct: 84  DMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL-NLNS 142

Query: 157 ASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
            +    L AC  +  S +   KM+H      G + +V VG AL+ +Y K G      K+F
Sbjct: 143 YALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIF 202

Query: 215 GEMRVRNVITWTAVISGLVQ-----NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             M   NV+ + A+I+G +Q     ++   E + LF +M    + P+  T+ S + ACS 
Sbjct: 203 KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACST 262

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           ++A   G+QIH  ++K  LQSD  I +AL+++YS  GS+ED  + F    +LD VS T +
Sbjct: 263 IEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSL 322

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +VG  QNG  E  + LF +++ +G + D   +S +L       ++  G+QIH+  IK+  
Sbjct: 323 IVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGI 382

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +   + N  I MY+KCGD++ +   F      + VSW+ MI++ A+HG   +A++L+E 
Sbjct: 383 GNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL 442

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  G+ P  +TFL +L ACSH GLV +G+ + + M + H I+P  +H AC+VD++GRAG
Sbjct: 443 MKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAG 502

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA SFI     + D ++W++LL AC +H  ++ GK  AE++   +P++ A Y+L+ N
Sbjct: 503 RLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYN 562

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +G      +    MK+ GV KE G+SWIE+   VHSFV  D+ HP +  I+  L E
Sbjct: 563 IYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEE 622

Query: 630 LLRLMIDEGYVPNK 643
           +L  +    Y+  K
Sbjct: 623 MLEEIKKLDYIDEK 636



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/539 (27%), Positives = 251/539 (46%), Gaps = 37/539 (6%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MP R+ VSWN+++SG+ + G +      FK +  +   +LD+ +F+  LS C R+    +
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEA-RMSDLRLDKFTFSNALSVCGRTLDLRL 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            ++IH L+ + G    V + N+LI  Y KCG     R VF      + ++W ++I+G V+
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC-SGLQALCE-GRQIHGILWKLALQSDL 292
               +E L+L VKM    +N NS    S++ AC S   +  E G+ +HG   KL L  D+
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ-----NGFEEEAMQLFV 347
            + +AL+D Y+K G +EDA +IF+   + + V    ++ GF Q     + F  EAM LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M   G++      S++L       +   GKQIH+ I K +  S+ F+ N L+ +YS  G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            +ED +K F      + VSW S+I    ++G     L L+ E+   G +P + T   +L 
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 468 ACSHVGLVNKGMEF--LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           AC+++  V  G +       T +   +       C+    G     I++ +   +    P
Sbjct: 360 ACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGD----IDSANMTFKETKNP 415

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCSGRWKERAKA 583
           D++ W  ++ + + HG     K A +   L +    AP     +  + +CS         
Sbjct: 416 DIVSWSVMISSNAQHG---CAKEAVDLFELMKGSGIAPNHITFLGVLVACS--------- 463

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI---HGVLAELLRLMIDEGY 639
                  G   E G+ + EI K+ H    + K       +    G LAE    ++D G+
Sbjct: 464 ------HGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGF 516


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 199/619 (32%), Positives = 337/619 (54%), Gaps = 27/619 (4%)

Query: 41  LDNYVDI-SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +D YV + S +   S  E     G  +HA  ++    +             + N L++ Y
Sbjct: 378 VDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIY---------RKIAVSNGLVNMY 428

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD---MGFGFFKRSLELGFYQLDQ 156
            KC  +  A ++F  M  RD +SWNT+++   +NG  +   M +   +++       +  
Sbjct: 429 AKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQN------SIGP 482

Query: 157 ASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           ++F  I  LS+C    L    + +HC     G   + +V NAL+  Y +CG  S   ++F
Sbjct: 483 SNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIF 542

Query: 215 GEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
             M   +V++W +++  +  +Q    E +++F  M    + PN +T+++ + A + L  L
Sbjct: 543 NSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVL 602

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVG 332
             G+QIH ++ K  +  D  +++ALM  Y+K G V+   ++F   +   D +S   ++ G
Sbjct: 603 ELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISG 662

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  NG  +EAM     M+ +   +D    S VL       +L  G ++H+  ++S   S+
Sbjct: 663 YIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESD 722

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + L++MYSKCG ++ + KVF  M+ +N  SWNSMI+ +ARHG G KALE++EEM+ 
Sbjct: 723 VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQE 782

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G  P  VTF+S+L ACSH GLV +G+++ + M E + I PR EHY+CV+D++GRAG L 
Sbjct: 783 SGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAGELD 841

Query: 513 EARSFIERMPVKPDVLVWQALLGAC--SIH-GDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           + + +++RMP+KP+ L+W+ +L AC  S H    ++G  A+  L   +P +P  Y+L + 
Sbjct: 842 KIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSK 901

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
            ++  GRW++ AKA   MK   V KE G SW+ +   VH+F+  D+ HP    I+  L  
Sbjct: 902 FHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNF 961

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L++ + + GYVP   ++LH
Sbjct: 962 LIQKIRNAGYVPLTEYVLH 980



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 222/459 (48%), Gaps = 20/459 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y K  ++  A ++FD MP R+ VSW  ++SG + +G  +  F  F+  L  G  
Sbjct: 104 NHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREG-P 162

Query: 153 QLDQASFTI--ILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKC--GS 206
                SFT   +L AC  S    +  +  +H LV    +    TV NALI+ Y  C  G 
Sbjct: 163 GCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGP 222

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL---GL-INPNSLTYLS 262
               ++VF    VR++ITW A++S   +         LF  M     G+ + P   T+  
Sbjct: 223 PILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTF-G 281

Query: 263 SVMACSGLQALCEG--RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           S++  + L +   G   Q+   + K    SDL + SAL+  +++ G +++A  I+   +E
Sbjct: 282 SLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKE 341

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMV--SAVLGVFGVDTSLGLG 377
            + V++  ++ G  +    E A ++F+     A + +D  +V  SA+      +  L  G
Sbjct: 342 RNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKG 401

Query: 378 KQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           +++H+ ++++        V+NGL+NMY+KCG ++ + +VF  M  R+ +SWN++I A  +
Sbjct: 402 REVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ 461

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G    A+  Y  M+   + P++   +S L +C+ +GL+  G +      +       + 
Sbjct: 462 NGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSV 521

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             A +V M G  G + E       M    DV+ W +++G
Sbjct: 522 SNA-LVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIMG 558



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 225/485 (46%), Gaps = 48/485 (9%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   +GP + A  +     FD   V ++    + WN+L+S Y K         LF  M  
Sbjct: 216 GSCSVGPPILAQRV-----FDTTPVRDL----ITWNALMSVYAKRGDAICTFTLFRAMQY 266

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
            D+                    G   R  E  F  L  A++   LS+C    L L+ ++
Sbjct: 267 DDS--------------------GIELRPTEHTFGSLITATY---LSSC---SLGLLDQL 300

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
               V   G   ++ VG+AL++++ + G     + ++  ++ RN +T   +I+GLV+ Q 
Sbjct: 301 F-VRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQH 359

Query: 238 YEEGLKLFVKMH-LGLINPNSLTYLSSVMA--CSGLQALCEGRQIHG-ILWKLALQSDLC 293
            E   ++F+       +N ++   L S +A   +  Q L +GR++H  +L    +   + 
Sbjct: 360 GEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIA 419

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + + L++MY+KCG+++ A ++F+  E  D +S   I+    QNG+ E AM  +  M +  
Sbjct: 420 VSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQN- 478

Query: 354 IEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             I P+  +A+ G+      LGL   G+Q+H   +K     +  V+N L+ MY +CG + 
Sbjct: 479 -SIGPSNFAAISGLSSC-AGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMS 536

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGF-KALELYEEMKLEGVEPTDVTFLSLLHAC 469
           +  ++F+ M+  + VSWNS++   A       ++++++  M   G+ P  VTF++ L A 
Sbjct: 537 ECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAAL 596

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           + + ++  G +    M + H ++        ++    ++G +        RM  + D + 
Sbjct: 597 TPLSVLELGKQIHSVMLK-HGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAIS 655

Query: 530 WQALL 534
           W +++
Sbjct: 656 WNSMI 660



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 196/431 (45%), Gaps = 33/431 (7%)

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            CD S  SL     H  V   G   ++ + N L+ SY K     + R+VF  M  RN ++
Sbjct: 79  GCDASPESL-----HLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVS 133

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMAC--SGLQALCEGRQIH 280
           WT +ISG V + L E+   LF  M        P S T+ S + AC  SG   L    Q+H
Sbjct: 134 WTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVH 193

Query: 281 GILWKLALQSDLCIESALMDMYSKC--GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           G++ K    S+  + +AL+ MY  C  G    A ++F+     D ++   ++  +A+ G 
Sbjct: 194 GLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGD 253

Query: 339 EEEAMQLFVKMV--KAGIEIDP---NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
                 LF  M    +GIE+ P      S +   +    SLGL  Q+   ++KS  +S+ 
Sbjct: 254 AICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDL 313

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           +V + L++ +++ G L+++  ++  +  RN+V+ N +IA   +  +G  A E++   +  
Sbjct: 314 YVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDS 373

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-------ACVVDMVG 506
                D T++ LL A +      +G   L+   EVH    RA H          +V+M  
Sbjct: 374 AAVNVD-TYVVLLSAIAEFSTAEQG---LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYA 429

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPY 564
           + G + +A    + M  + D + W  ++ A   +G  ++ M  Y    L       P+ +
Sbjct: 430 KCGAIDKACRVFQLMEAR-DRISWNTIITALDQNGYCEAAMMNYC---LMRQNSIGPSNF 485

Query: 565 ILMANIYSCSG 575
             ++ + SC+G
Sbjct: 486 AAISGLSSCAG 496


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 203/612 (33%), Positives = 329/612 (53%), Gaps = 27/612 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           +Y+ IS LL +     +   G  LH   +K+           + +   + NSLLS Y + 
Sbjct: 260 DYITISALLPVCGSAQNLRWGRGLHGMVVKS----------GLESNVCVCNSLLSMYSQA 309

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL------DQ 156
            +  +A  +F  M  RD +SWN+M++  + NG +        R+LEL    L      + 
Sbjct: 310 GKSEDAEFVFHKMRERDLISWNSMMASHVDNGNY-------PRALELLIEMLQTRKATNY 362

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +FT  LSAC   E     K++H  V L G    + +GNAL+T Y K GS ++ ++V   
Sbjct: 363 VTFTTALSACYNLE---TLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKI 419

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA-CSGLQALCE 275
           M  R+ +TW A+I G   N+     ++ F  +    +  N +T ++ + A  S    L  
Sbjct: 420 MPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDH 479

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G  IH  +     + +  ++S+L+ MY++CG +  +  IF+     +  +   IL   A 
Sbjct: 480 GMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAH 539

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
            G  EEA++L +KM   GI +D    S    + G  T L  G+Q+HSLIIK  F SN +V
Sbjct: 540 YGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYV 599

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N  ++MY KCG+++D  ++  +   R+  SWN +I+A ARHG   +A E + EM   G+
Sbjct: 600 LNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGL 659

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
            P  VTF+SLL ACSH GLV++G+ +  SM+    +    EH  C++D++GRAG L EA 
Sbjct: 660 RPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAE 719

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           +FI +MPV P  LVW++LL AC IHG+ E+ + AA++LF       + Y+L +N+ + + 
Sbjct: 720 NFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCASTR 779

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
           RW++     K+M+   + K+   SW++++ QV +F + D+ HPQ   I+  L EL +++ 
Sbjct: 780 RWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIR 839

Query: 636 DEGYVPNKRFIL 647
           + GY+P+  + L
Sbjct: 840 EAGYMPDTSYSL 851



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 239/476 (50%), Gaps = 11/476 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K   + +A  +FD MP R+  SWN ++SGF+R G +     FF   LE G       +
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 159 FTIILSACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
            +++ +ACDRS  ++  +  +H  V  CG   +V VG +L+  Y   G  +    VF E+
Sbjct: 62  ASLV-TACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              N+++WT+++ G   N   +E + ++ ++    +  N     + + +C  L     G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+ G + K  L + + + ++L+ M+  C S+E+A  +F+  +E D +S   I+     NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E++++ F +M     + D   +SA+L V G   +L  G+ +H +++KS   SN  V N
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++MYS+ G  ED+  VF +M  R+ +SWNSM+A+   +GN  +ALEL  EM       
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT 360

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             VTF + L AC ++  +     F+  +   H +         +V M G+ G +  A+  
Sbjct: 361 NYVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIG----NALVTMYGKFGSMAAAQRV 416

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-PAPYILMANIYS 572
            + MP + +V  W AL+G    H D++    A E   L + +  P  YI + N+ S
Sbjct: 417 CKIMPDRDEV-TWNALIGG---HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLS 468



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 214/457 (46%), Gaps = 17/457 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SLL FY     +     +F ++   + VSW +++ G+  NG        ++R    G Y 
Sbjct: 99  SLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYC 158

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVY----LCGYEEEVTVGNALITSYFKCGSSSS 209
            + A  T+I     RS   LV KM+   V       G +  V+V N+LI+ +  C S   
Sbjct: 159 NENAMATVI-----RSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEE 213

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF +M+ R+ I+W ++I+  V N   E+ L+ F +M       + +T  + +  C  
Sbjct: 214 ASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGS 273

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            Q L  GR +HG++ K  L+S++C+ ++L+ MYS+ G  EDA  +F    E D +S   +
Sbjct: 274 AQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSM 333

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +     NG    A++L ++M++     +     +A+   + ++T     K +H+ +I   
Sbjct: 334 MASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETL----KIVHAFVILLG 389

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N  + N L+ MY K G +  + +V   M  R+ V+WN++I   A +     A+E + 
Sbjct: 390 LHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFN 449

Query: 449 EMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            ++ EGV    +T ++LL A  S   L++ GM  + +   V          + ++ M  +
Sbjct: 450 LLREEGVPVNYITIVNLLSAFLSPDDLLDHGMP-IHAHIVVAGFELETFVQSSLITMYAQ 508

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G L    ++I  +    +   W A+L A + +G  E
Sbjct: 509 CGDL-NTSNYIFDVLANKNSSTWNAILSANAHYGPGE 544



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 118/249 (47%), Gaps = 11/249 (4%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSK GS+E A  +F+   E +  S   ++ GF + G+ ++AMQ F  M++ G+   P+ 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVR--PSS 58

Query: 361 VSAVLGVFGVDTSLGLGK---QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
             A   V   D S  + +   Q+H+ +IK     + FV   L++ Y   G + +   VF 
Sbjct: 59  YVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFK 118

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +   N VSW S++  +A +G   + + +Y  ++ +GV   +    +++ +C    LV+K
Sbjct: 119 EIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCG--VLVDK 176

Query: 478 --GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G + L S+ +   +         ++ M G    + EA    + M  + D + W +++ 
Sbjct: 177 MLGYQVLGSVIK-SGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKER-DTISWNSIIT 234

Query: 536 ACSIHGDSE 544
           A   +G  E
Sbjct: 235 ASVHNGHCE 243


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 328/613 (53%), Gaps = 20/613 (3%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           +DN+V I  +L        F LG  +H   +K     D            + N+L+  Y 
Sbjct: 122 VDNFV-IPSVLKACCLIPSFLLGQEVHGFVVKNGFHGD----------VFVCNALIMMYS 170

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQAS 158
           +   +  A  LFD +  +D VSW+TM+  + R+G  D      +    + +   ++   S
Sbjct: 171 EVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMIS 230

Query: 159 FTIILSACDRSELSLVSKMIHCLVYL---CGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
            T +L+  + ++L L  K +H  V     CG +  V +  ALI  Y KC + +  R+VF 
Sbjct: 231 ITHVLA--ELADLKL-GKAMHAYVMRNGKCG-KSGVPLCTALIDMYVKCENLAYARRVFD 286

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            +   ++I+WTA+I+  +      EG++LFVKM    + PN +T LS V  C    AL  
Sbjct: 287 GLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALEL 346

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+ +H    +      L + +A +DMY KCG V  A  +F+  +  D +  + ++  +AQ
Sbjct: 347 GKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQ 406

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           N   +EA  +FV M   GI  +   + ++L +     SL +GK IHS I K     +  +
Sbjct: 407 NNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMIL 466

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
               ++MY+ CGD++ + ++F+    R+   WN+MI+ FA HG+G  ALEL+EEM+  GV
Sbjct: 467 KTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGV 526

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
            P D+TF+  LHACSH GL+ +G      M      +P+ EHY C+VD++GRAGLL EA 
Sbjct: 527 TPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAH 586

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             I+ MP++P++ V+ + L AC +H + ++G++AA++    +P      +LM+NIY+ + 
Sbjct: 587 ELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASAN 646

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635
           RW + A   + MK+ G+ KE G+S IE+   +H F++ D+ HP A  ++ ++ E+   + 
Sbjct: 647 RWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLE 706

Query: 636 DEGYVPNKRFILH 648
           D GY P+   +LH
Sbjct: 707 DAGYTPDVSCVLH 719



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/550 (24%), Positives = 253/550 (46%), Gaps = 61/550 (11%)

Query: 56  KEGHFHLGPS--LHASFIKTFEPFDNQNVYNVPNATV--------IWNSLLSFYLKCDQM 105
           +E H +L  +  LH  FIKT     +   Y VP A +        I + L++ Y+K +  
Sbjct: 50  QELHINLNETQQLHGHFIKT----SSNCSYRVPLAALESYSSNAAIHSFLITSYIKNNCP 105

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
            +A K++  M   DT                                ++D      +L A
Sbjct: 106 ADAAKIYAYMRGTDT--------------------------------EVDNFVIPSVLKA 133

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C      L+ + +H  V   G+  +V V NALI  Y + GS +  R +F ++  ++V++W
Sbjct: 134 CCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSW 193

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           + +I    ++ L +E L L   MH+  + P+ +  +S     + L  L  G+ +H  + +
Sbjct: 194 STMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMR 253

Query: 286 LAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
                +S + + +AL+DMY KC ++  A ++F+   +   +S T ++  +       E +
Sbjct: 254 NGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGV 313

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +LFVKM+  G+  +   + +++   G   +L LGK +H+  +++ FT +  +    I+MY
Sbjct: 314 RLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMY 373

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCGD+  +  VF     ++ + W++MI+++A++    +A +++  M   G+ P + T +
Sbjct: 374 GKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMV 433

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMP 522
           SLL  C+  G +  G +++ S  +   I          VDM    G +  A R F E   
Sbjct: 434 SLLMICAKAGSLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE--A 490

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDSPAPYILMANIYSC--SGRW 577
              D+ +W A++   ++HG  E    AA +LF    A   +P     +  +++C  SG  
Sbjct: 491 TDRDISMWNAMISGFAMHGHGE----AALELFEEMEALGVTPNDITFIGALHACSHSGLL 546

Query: 578 KERAKAIKRM 587
           +E  +   +M
Sbjct: 547 QEGKRLFHKM 556


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 304/549 (55%), Gaps = 2/549 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++++  Y K  +   A K+FD MP RDTV WNTM+SGF RN  F+     F   L++G
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +   +L+A    +   +   I CL    G   +V V   LI+ Y KCG S  G
Sbjct: 210 L-SFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F ++   ++I++ A+ISG   N   E  + LF ++       NS T +  +      
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L   R I  +  K+ +     + +AL  +Y +   V+ A Q+F+ + E    S   ++
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+ QNG  + A+ LF +M+   +  +P  V+++L       +L +GK +H LI      
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           SN +V+  L++MY+KCG + ++ ++F  M  +N V+WN+MI  +  HG+G +AL+L+ EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              G+ PT VTFLS+L+ACSH GLV++G E   SM   +   P +EHYAC+VD++GRAG 
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L  A  FIERMP++P   VW ALLGAC IH ++EM   A+++LF   P++   Y+L++NI
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           YS    + + A   + +K+  + K  G + IEI+ Q + F   D+ HPQA  I  +L +L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 631 LRLMIDEGY 639
              M + GY
Sbjct: 688 TGKMREAGY 696



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 230/468 (49%), Gaps = 10/468 (2%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LF+ +   D   +N ++ GF  NG        +    +    + D  ++   +SA  R 
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRL 126

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           E   V  ++H    + G    + VG+A++  YFK   +   RKVF  M  R+ + W  +I
Sbjct: 127 EDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMI 186

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG  +N  +E+ +++FV M    ++ +S T  + + A + LQ    G  I  +  K  L 
Sbjct: 187 SGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH 246

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           SD+ + + L+ +YSKCG       +F+  ++ D +S   ++ G+  N   E A+ LF ++
Sbjct: 247 SDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + +G  ++ + +  ++ V+     L L + I +L +K      P V+  L  +Y +  ++
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + + ++F     ++  SWN+MI+ + ++G   +A+ L++EM +  + P  VT  S+L AC
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           + +G ++ G +++  + +  R+         +VDM  + G ++EAR   + M V  +V+ 
Sbjct: 426 AQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVT 483

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           W A++    +HG  +     A KLF     S   P     ++ +Y+CS
Sbjct: 484 WNAMITGYGLHGHGK----EALKLFYEMLQSGIPPTGVTFLSILYACS 527



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 134/295 (45%), Gaps = 23/295 (7%)

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           LT L++    S L  +     +HGI +      DL   + L   +   G+V    Q+F  
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHY------DLSSITKLTHKFFDLGAVAHVRQLFNK 71

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTS 373
             + D     V++ GF+ NG  + ++ L+  + K    + P+  +    +       D  
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKK-TNLRPDNFTYAFAISAASRLEDER 130

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           +G+    HS++      SN FV + ++++Y K    E + KVF  M  R++V WN+MI+ 
Sbjct: 131 VGVLLHAHSIV--DGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM--EFLKSMTEVHRI 491
           F+R+     ++ ++ +M   G+     T  ++L A + +     GM  + L S   +H  
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH-- 246

Query: 492 SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              ++ Y    ++ +  + G   + R   +++  +PD++ + A++   + + ++E
Sbjct: 247 ---SDVYVLTGLISLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETE 297


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 304/549 (55%), Gaps = 2/549 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++++  Y K  +   A K+FD MP RDTV WNTM+SGF RN  F+     F   L++G
Sbjct: 150 VGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVG 209

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +   +L+A    +   +   I CL    G   +V V   LI+ Y KCG S  G
Sbjct: 210 L-SFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKG 268

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F ++   ++I++ A+ISG   N   E  + LF ++       NS T +  +      
Sbjct: 269 RILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPF 328

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L   R I  +  K+ +     + +AL  +Y +   V+ A Q+F+ + E    S   ++
Sbjct: 329 NHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMI 388

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+ QNG  + A+ LF +M+   +  +P  V+++L       +L +GK +H LI      
Sbjct: 389 SGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           SN +V+  L++MY+KCG + ++ ++F  M  +N V+WN+MI  +  HG+G +AL+L+ EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              G+ PT VTFLS+L+ACSH GLV++G E   SM   +   P +EHYAC+VD++GRAG 
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L  A  FIERMP++P   VW ALLGAC IH ++EM   A+++LF   P++   Y+L++NI
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           YS    + + A   + +K+  + K  G + IEI+ Q + F   D+ HPQA  I  +L +L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 631 LRLMIDEGY 639
              M + GY
Sbjct: 688 TGKMREAGY 696



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 230/468 (49%), Gaps = 10/468 (2%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LF+ +   D   +N ++ GF  NG        +    +    + D  ++   +SA  R 
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRL 126

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           E   V  ++H    + G    + VG+A++  YFK   +   RKVF  M  R+ + W  +I
Sbjct: 127 EDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMI 186

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG  +N  +E+ +++FV M    ++ +S T  + + A + LQ    G  I  +  K  L 
Sbjct: 187 SGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH 246

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           SD+ + + L+ +YSKCG       +F+  ++ D +S   ++ G+  N   E A+ LF ++
Sbjct: 247 SDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFREL 306

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + +G  ++ + +  ++ V+     L L + I +L +K      P V+  L  +Y +  ++
Sbjct: 307 LASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEV 366

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + + ++F     ++  SWN+MI+ + ++G   +A+ L++EM +  + P  VT  S+L AC
Sbjct: 367 QFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSAC 425

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           + +G ++ G +++  + +  R+         +VDM  + G ++EAR   + M V  +V+ 
Sbjct: 426 AQLGALSIG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVT 483

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           W A++    +HG  +     A KLF     S   P     ++ +Y+CS
Sbjct: 484 WNAMITGYGLHGHGK----EALKLFYEMLQSGIPPTGVTFLSILYACS 527



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 134/295 (45%), Gaps = 23/295 (7%)

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           LT L++    S L  +     +HGI +      DL   + L   +   G+V    Q+F  
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHY------DLSSITKLTHKFFDLGAVAHVRQLFNK 71

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTS 373
             + D     V++ GF+ NG  + ++ L+  + K    + P+  +    +       D  
Sbjct: 72  VSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKX-TNLRPDNFTYAFAISAASRLEDER 130

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           +G+    HS++      SN FV + ++++Y K    E + KVF  M  R++V WN+MI+ 
Sbjct: 131 VGVLLHAHSIV--DGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM--EFLKSMTEVHRI 491
           F+R+     ++ ++ +M   G+     T  ++L A + +     GM  + L S   +H  
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH-- 246

Query: 492 SPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              ++ Y    ++ +  + G   + R   +++  +PD++ + A++   + + ++E
Sbjct: 247 ---SDVYVLTGLISLYSKCGKSCKGRILFDQID-QPDLISYNAMISGYTFNHETE 297


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 288/489 (58%), Gaps = 1/489 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC +S+    ++ +H  +    +  +  + N+LI  Y KCGS    RKVF EMR
Sbjct: 54  YHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++++WT++I+G  QN + EE + L   M  G   PN  T+ S + A         GRQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQ 173

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH +  K     D+ + SAL+DMY++CG ++ A  +F+  +  +GVS   ++ GFA+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E A+  F +M++ G E      S+V        +L  GK +H+ +IKS      F  N 
Sbjct: 234 GETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNT 293

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY+K G + D+ KVF R+  ++ V+WN+M+ AFA++G G +A+  +EEM+  G+   
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VTFL +L ACSH GLV +G  + + M E + + P  +H+  VV ++GRAGLL  A  FI
Sbjct: 354 QVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNFALVFI 412

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
            +MP++P   VW ALL AC +H ++++G++AA+ +F   PD   P +L+ NIY+ +G+W 
Sbjct: 413 FKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             A+  + MK  GV KE   SW+E+E  VH FV +D  HP+A+ I+ +  ++ + +  EG
Sbjct: 473 AAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEG 532

Query: 639 YVPNKRFIL 647
           YVP+  ++L
Sbjct: 533 YVPDMDYVL 541



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 185/357 (51%), Gaps = 25/357 (7%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G + P    Y + + AC+  + L + R++H  L       D  ++++L+ +Y KCGSV +
Sbjct: 45  GELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLE 104

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+     D VS T ++ G+AQN   EEA+ L   M+K   + +    +++L   G 
Sbjct: 105 ARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
               G+G+QIH+L +K D+  + +V + L++MY++CG ++ +  VF ++  +N VSWN++
Sbjct: 165 HADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL 224

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ FAR G+G  AL  + EM   G E T  T+ S+  + + +G + +G          H 
Sbjct: 225 ISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG-----KWVHAHM 279

Query: 491 ISPRAEHYA----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           I  R +  A     ++DM  ++G +I+AR   +R+  K D++ W  +L A + +G   +G
Sbjct: 280 IKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDK-DLVTWNTMLTAFAQYG---LG 335

Query: 547 KYAAEK--------LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           K A           ++L Q      ++ +    S  G  KE  +  + MKE  ++ E
Sbjct: 336 KEAVSHFEEMRKSGIYLNQ----VTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPE 388



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 178/364 (48%), Gaps = 12/364 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  +  A K+FD+M  +D VSW ++++G+ +N   +   G     L+ G +
Sbjct: 90  NSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLK-GRF 148

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L A      S + + IH L   C + E+V VG+AL+  Y +CG       
Sbjct: 149 KPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATA 208

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  +N ++W A+ISG  +    E  L  F +M          TY S   + + L A
Sbjct: 209 VFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGA 268

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+ +H  + K   +      + L+DMY+K GS+ DA ++F+  ++ D V+   +L  
Sbjct: 269 LEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTA 328

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS- 391
           FAQ G  +EA+  F +M K+GI ++      +L        +  GK+   ++ + D    
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPE 388

Query: 392 -NPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNG----FKAL 444
            + FV   ++ +  + G L  ++    +M   P  +V W +++AA   H N     F A 
Sbjct: 389 IDHFVT--VVALLGRAGLLNFALVFIFKMPIEPTAAV-WGALLAACRMHKNAKVGQFAAD 445

Query: 445 ELYE 448
            ++E
Sbjct: 446 HVFE 449



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 11/250 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + LL  +       +G  +HA  +K      +++VY       + ++LL  Y +C
Sbjct: 151 NGFTFASLLKAAGAHADSGIGRQIHALAVKCDW---HEDVY-------VGSALLDMYARC 200

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             M  A  +FD +  ++ VSWN ++SGF R G+ +     F   L  GF +    +++ +
Sbjct: 201 GMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGF-EATHFTYSSV 259

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            S+  R       K +H  +     +     GN L+  Y K GS    RKVF  +  +++
Sbjct: 260 FSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDL 319

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +TW  +++   Q  L +E +  F +M    I  N +T+L  + ACS    + EG++   +
Sbjct: 320 VTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEM 379

Query: 283 LWKLALQSDL 292
           + +  L+ ++
Sbjct: 380 MKEYDLEPEI 389


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 316/588 (53%), Gaps = 12/588 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG + HA  +KT +          P    ++N L++ Y K D + +A  + +  P R  V
Sbjct: 24  LGRAAHAQILKTLK---------TPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVV 74

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +W  +++G ++NG F      F   L     + +  +F  +L A     +    K +H L
Sbjct: 75  TWTALIAGSVQNGCFVSALLHFSDMLS-DCVRPNDFTFPCVLKASTGLRMDTTGKQLHAL 133

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G   +V VG ++   Y K G  +   KVF EM  RN+ TW A IS  V +   E+ 
Sbjct: 134 AVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDS 193

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +  F+++      P+S+T+   + ACS    L  G Q+HG + +     ++ + + L+D 
Sbjct: 194 VIAFIELLRVGGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDF 253

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG VE +  +F+   E + VS + ++  + QN  EE+A  LF++  K  IE    MV
Sbjct: 254 YGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMV 313

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           S+VL      + +  G+ + +L +K+    N FV + L++MY KCG ++++ + F+ M  
Sbjct: 314 SSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPE 373

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           RN VSWN+++  +A  G+  KA+ L EEM    G+ P+ V+ +  L ACS  G +  GM+
Sbjct: 374 RNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMK 433

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             +SM E + + P  EHYAC+VD++GRAG++  A  FI+RMP  P + +W ALLGAC +H
Sbjct: 434 IFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMH 493

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           G  E+GK AAEKLF   P     +++++N+++ +GRW+E       MKE+G+ K  G SW
Sbjct: 494 GKPELGKLAAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSW 553

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID-EGYVPNKRFIL 647
           I ++ ++H F   DK H +   I  +L +L + M D  G + +  + L
Sbjct: 554 ITVDSRIHMFQAKDKSHEKDPEIQDILGKLRKEMQDAAGCIADPNYAL 601


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 329/648 (50%), Gaps = 95/648 (14%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           V   +LLS Y     ++ A +LF+  P+  RDTVS+N M++ +    +       F +  
Sbjct: 72  VARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMK 131

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVS------KMIHCLVYLCGYEEEVTVGNALITSY 201
             GF   D  +F+ +LSA     LSL++      +M+HC V   G     +V NAL++ Y
Sbjct: 132 RYGFLP-DPFTFSSVLSA-----LSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCY 185

Query: 202 FKCGSS---------SSGRKVFGEM----------------RVRNV-------------- 222
             C SS         +S RKVF E                  VRN               
Sbjct: 186 VCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTY 245

Query: 223 ---ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG----LQALCE 275
              + W A+ISG V+  LYEE    F +MH   I  +  TY S + AC      +     
Sbjct: 246 PIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNC 305

Query: 276 GRQIHGILWKLALQSD----LCIESALMDMYSK--------------------------- 304
           GRQ+HG + +  ++      L + +AL+  Y+K                           
Sbjct: 306 GRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLS 365

Query: 305 ----CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
                  +E+A  IF    E + ++ TV++ G AQNGF EE ++LF +M   G+E     
Sbjct: 366 GYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYA 425

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            +  +    V  SL  G+QIHS +I+    S     N LI MYS+CG +E +  VF  M 
Sbjct: 426 FAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMP 485

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             +SVSWN+MIAA A+HG+G KA+EL+E+M  E + P  +TFL++L AC+H GL+ +G  
Sbjct: 486 YVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRH 545

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  +M   + I+P  +HYA ++D++ RAG+ ++A+S I+ MP +    +W+ALL  C IH
Sbjct: 546 YFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIH 605

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           G+ E+G  AA++L    P     YI+++N+Y+  G+W E A+    M+E GV KE G SW
Sbjct: 606 GNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSW 665

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +E+E  VH F+VDD  HP+   ++  L +L+  M   GYVP+ +F+LH
Sbjct: 666 VEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLH 713



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/446 (28%), Positives = 205/446 (45%), Gaps = 58/446 (13%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           L AS  K F+      +Y  P+    W ++++ Y++ D +  A +L D +     V+WN 
Sbjct: 199 LMASARKVFDETPKNQIYE-PS----WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNA 253

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M+SG++R G ++  F  F+R   +G  Q D+ ++T ++SAC      +   M +C   + 
Sbjct: 254 MISGYVRRGLYEEAFDTFRRMHSMGI-QEDEYTYTSLISACGSCNEKM--GMFNCGRQVH 310

Query: 186 GY----------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---------------- 219
           GY             ++V NALIT Y K       R+VF +M V                
Sbjct: 311 GYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNA 370

Query: 220 ---------------RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                          RNV+TWT +ISGL QN   EEGLKLF +M    + P    +  ++
Sbjct: 371 QRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAI 430

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            ACS L +L  G+QIH  + +L   S L   +AL+ MYS+CG VE A  +F     +D V
Sbjct: 431 TACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSV 490

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----I 380
           S   ++   AQ+G   +A++LF +M+K   +I P+ ++  L +       GL K+     
Sbjct: 491 SWNAMIAALAQHGHGVKAIELFEQMMKE--DILPDRIT-FLTILTACNHAGLIKEGRHYF 547

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
            ++  +   T        LI++  + G    +  V   M     +  W +++A    HGN
Sbjct: 548 DTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGN 607

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSL 465
               ++  + + LE +   D T++ L
Sbjct: 608 MELGIQAADRL-LELIPGQDGTYIIL 632



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 109/489 (22%), Positives = 194/489 (39%), Gaps = 119/489 (24%)

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE------------ 216
           S   ++++ +H  +   G++    + N LI  Y K  + +  RK+F +            
Sbjct: 18  STTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTL 77

Query: 217 ---------------------MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
                                + +R+ +++ A+I+           L LFV+M      P
Sbjct: 78  LSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLP 137

Query: 256 NSLTYLSSVMACSGLQALCEG--RQIHGILWKLALQSDLCIESALMDMYSKCGS------ 307
           +  T+ SSV++   L A  E   + +H  + KL       + +AL+  Y  C S      
Sbjct: 138 DPFTF-SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKS 196

Query: 308 -------------------VEDAW-----------QIFEFAEELDG------VSMTVILV 331
                               E +W            +    E LDG      V+   ++ 
Sbjct: 197 SQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMIS 256

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG-VDTSLGL---GKQIHSLIIKS 387
           G+ + G  EEA   F +M   GI+ D    ++++   G  +  +G+   G+Q+H  I+++
Sbjct: 257 GYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRT 316

Query: 388 DF-TSNPF---VNNGLINMYSK-------------------------------CGDLEDS 412
               S+ F   VNN LI  Y+K                                  +E++
Sbjct: 317 VVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEA 376

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +FS M  RN ++W  MI+  A++G G + L+L+ +MK EG+EP D  F   + ACS +
Sbjct: 377 NSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVL 436

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G ++ G +    +  +   S  +   A ++ M  R G++  A S    MP   D + W A
Sbjct: 437 GSLDNGQQIHSQVIRLGHDSGLSAGNA-LITMYSRCGVVESAESVFLTMPYV-DSVSWNA 494

Query: 533 LLGACSIHG 541
           ++ A + HG
Sbjct: 495 MIAALAQHG 503



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 123/317 (38%), Gaps = 81/317 (25%)

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-------- 421
           V T+  + + +H+ I+ S F  N F+ N LIN+Y K  ++  + K+F ++          
Sbjct: 17  VSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTT 76

Query: 422 -------------------------RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
                                    R++VS+N+MI A++   +G  AL L+ +MK  G  
Sbjct: 77  LLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFL 136

Query: 457 PTDVTFLSLLHACS------------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD- 503
           P   TF S+L A S            H  ++  G   + S+T     +     Y C    
Sbjct: 137 PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVT-----NALLSCYVCCASS 191

Query: 504 -MVGRAGLLIEARSFIERMP----VKPDVLVWQALLGACSIHGDSEMGKYAAEKLF--LA 556
            +V  + L+  AR   +  P     +P    W  ++     + D      AA +L   L 
Sbjct: 192 PLVKSSQLMASARKVFDETPKNQIYEPS---WTTMIAGYVRNDD----LVAARELLDGLT 244

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV--DKETGISWI------------- 601
            P   A +  M + Y   G ++E     +RM  MG+  D+ T  S I             
Sbjct: 245 YPIDVA-WNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMF 303

Query: 602 EIEKQVHSFVVDDKMHP 618
              +QVH +++   + P
Sbjct: 304 NCGRQVHGYILRTVVEP 320


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/489 (36%), Positives = 285/489 (58%), Gaps = 1/489 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC +S+    ++ IH  +    +  +  + N+LI  Y KC S    R VF +MR
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++++WT++I+G  QN +  E + L   M  G   PN  T+ S + A         GRQ
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQ 173

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH +  K     D+ + SAL+DMY++CG ++ A  +F+  +  +GVS   ++ GFA+ G 
Sbjct: 174 IHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E A+  F +M++ G E      S+V        +L  GK +H+ +IKS      FV N 
Sbjct: 234 GESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT 293

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY+K G + D+ KVF R+  ++ V+WNSM+ AFA++G G +A+  +EEM+  GV   
Sbjct: 294 LLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLN 353

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            +TFL +L ACSH GLV +G  + + M E + + P  +HY  VV ++GRAGLL  A  FI
Sbjct: 354 QITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNYALVFI 412

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
            +MP++P   VW ALL AC +H ++++G++AA+ +F   PD   P +L+ NIY+ +G+W 
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWD 472

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             A+    MK  GV KE   SW+E+E  VH FV +D  HPQA+ I+ +  E+ + +  EG
Sbjct: 473 AAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKEG 532

Query: 639 YVPNKRFIL 647
           YVP+  ++L
Sbjct: 533 YVPDMDYVL 541



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 162/303 (53%), Gaps = 13/303 (4%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G + P    Y S + AC+  + L + R+IH  L       D  ++++L+ MY KC SV D
Sbjct: 45  GELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLD 104

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+     D VS T ++ G+AQN    EA+ L   M+K   + +    +++L   G 
Sbjct: 105 ARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
               G G+QIH+L +K  +  + +V + L++MY++CG ++ +  VF ++  +N VSWN++
Sbjct: 165 YADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ FAR G+G  AL  + EM   G E T  T+ S+  + + +G + +G          H 
Sbjct: 225 ISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQG-----KWVHAHV 279

Query: 491 ISPRAEHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           I  R +  A V    +DM  ++G +I+AR   +R+  K D++ W ++L A + +G   +G
Sbjct: 280 IKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNK-DLVTWNSMLTAFAQYG---LG 335

Query: 547 KYA 549
           K A
Sbjct: 336 KEA 338



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 172/352 (48%), Gaps = 8/352 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  + +A  +FD M  +D VSW ++++G+ +N       G     L+ G +
Sbjct: 90  NSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLK-GRF 148

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L A      S   + IH L   CG+ E+V VG+AL+  Y +CG       
Sbjct: 149 KPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  +N ++W A+ISG  +    E  L  F +M          TY S   + + L A
Sbjct: 209 VFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGA 268

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+ +H  + K   +    + + L+DMY+K GS+ DA ++F+  +  D V+   +L  
Sbjct: 269 LEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTA 328

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           FAQ G  +EA+  F +M K+G+ ++      +L        +  GK+   ++ + D    
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMKEYDL--E 386

Query: 393 PFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNG 440
           P +++   ++ +  + G L  ++    +M   P  +V W +++AA   H N 
Sbjct: 387 PEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAV-WGALLAACRMHKNA 437



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 1/202 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++LL  Y +C +M  A  +FD +  ++ VSWN ++SGF R G+ +     F   L  G
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F +    +++ + S+  R       K +H  V     +    VGN L+  Y K GS    
Sbjct: 249 F-EATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDA 307

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RKVF  +  ++++TW ++++   Q  L +E +  F +M    +  N +T+L  + ACS  
Sbjct: 308 RKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHG 367

Query: 271 QALCEGRQIHGILWKLALQSDL 292
             + EG++   ++ +  L+ ++
Sbjct: 368 GLVKEGKRYFEMMKEYDLEPEI 389


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/591 (33%), Positives = 310/591 (52%), Gaps = 36/591 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y  C  +R A  +FD MP R+ ++WN++ S ++  G    G   F R + L   
Sbjct: 281 NALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVF-REMGLNGV 339

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  + + IL AC + +     K IH      G  E+V V  AL+  Y  C      + 
Sbjct: 340 KPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQT 399

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RNV+TW ++ S  V     ++GL +F +M L  + P+ +T LS + ACS LQ 
Sbjct: 400 VFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQD 459

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---------------- 316
           L  G+ IHG   +  +  D+ + +AL+ +Y+KC  V +A  +F+                
Sbjct: 460 LKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTA 519

Query: 317 -------------FAE------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
                        F++      + D ++ +V++ G  +N   EEAM++F KM   G + D
Sbjct: 520 YFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPD 579

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              + ++L    +   L +GK+IH  + +     +    N L++MY+KCG L  S  VF 
Sbjct: 580 ETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFD 639

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  ++  SWN+MI A   HGNG +AL L+E+M L  V+P   TF  +L ACSH  LV +
Sbjct: 640 MMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEE 699

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G++   SM+  H + P AEHY CVVD+  RAG L EA  FI+RMP++P  + W+A L  C
Sbjct: 700 GVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGC 759

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            ++ + E+ K +A+KLF   P+  A Y+ + NI   +  W E +K  K MKE G+ K  G
Sbjct: 760 RVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPG 819

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            SW  +  +VH+FV  DK + ++D I+  L EL   +   GY P+  ++LH
Sbjct: 820 CSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLH 870



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 235/484 (48%), Gaps = 15/484 (3%)

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           +K  +  D+     V +   I N+ +  Y KC  +  A ++FDD+  RD V+WN++ + +
Sbjct: 57  LKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACY 116

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
           +  G    G   F R + L   + +  + + IL  C   +     K IH  V   G  E+
Sbjct: 117 VNCGFPQQGLNVF-RKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVED 175

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V V +A +  Y KC      + VF  M  R+V+TW ++ S  V     ++GL +F +M L
Sbjct: 176 VFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVL 235

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             + P+ +T    + ACS LQ L  G+ IHG   K  +  ++ + +AL+++Y  C  V +
Sbjct: 236 DGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVRE 295

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+     + ++   +   +   GF ++ + +F +M   G++ DP  +S++L     
Sbjct: 296 AQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQ 355

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L  GK IH   +K     + FV   L+N+Y+ C  + ++  VF  M  RN V+WNS+
Sbjct: 356 LKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSL 415

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
            + +   G   K L ++ EM L GV+P  VT LS+LHACS        ++ LKS   +H 
Sbjct: 416 SSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACS-------DLQDLKSGKVIHG 468

Query: 491 ISPR----AEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + R     + + C  ++ +  +   + EA+   + +P + +V  W  +L A   + + E
Sbjct: 469 FAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGILTAYFTNKEYE 527

Query: 545 MGKY 548
            G Y
Sbjct: 528 KGLY 531



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 236/504 (46%), Gaps = 38/504 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++ ++FY KC  +R A  +FD MP RD V+WN++ S ++  G    G   F R + L   
Sbjct: 180 SAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVF-REMVLDGV 238

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  + + ILSAC   +     K IH      G  E V V NAL+  Y  C      + 
Sbjct: 239 KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQA 298

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RNVITW ++ S  V     ++GL +F +M L  + P+ +   S + ACS L+ 
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ IHG   K  +  D+ + +AL+++Y+ C  V +A  +F+     + V+   +   
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +   GF ++ + +F +MV  G++ D   + ++L        L  GK IH   ++     +
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV N L+++Y+KC  + ++  VF  +  R   SWN ++ A+  +    K L ++ +M  
Sbjct: 479 VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNR 538

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLK---------------------SMTEVHRI 491
           + V+  ++T+  ++  C     + + ME  +                     S++E  R+
Sbjct: 539 DEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRM 598

Query: 492 SPRAEHYA-------------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
                 Y               +VDM  + G L  +R+  + MP+K DV  W  ++ A  
Sbjct: 599 GKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANG 657

Query: 539 IHGDSEMGKYAAEKLFLA--QPDS 560
           +HG+ +      EK+ L+  +PDS
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDS 681



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 195/385 (50%), Gaps = 14/385 (3%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D+  F  +  AC  S  +L  K  H     CG   +V++GNA I +Y KC      R+VF
Sbjct: 39  DKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVF 98

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            ++  R+V+TW ++ +  V     ++GL +F KM L  +  N LT  S +  CS LQ L 
Sbjct: 99  DDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLK 158

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G++IHG + +  +  D+ + SA ++ Y+KC  V +A  +F+     D V+   +   + 
Sbjct: 159 SGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYV 218

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
             GF ++ + +F +MV  G++ DP  VS +L        L  GK IH   +K     N F
Sbjct: 219 NCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVF 278

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V+N L+N+Y  C  + ++  VF  M  RN ++WNS+ + +   G   K L ++ EM L G
Sbjct: 279 VSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNG 338

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYAC--VVDMVGRA 508
           V+P  +   S+L ACS        ++ LKS   +H  + +     + + C  +V++    
Sbjct: 339 VKPDPMAMSSILPACSQ-------LKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANC 391

Query: 509 GLLIEARSFIERMPVKPDVLVWQAL 533
             + EA++  + MP + +V+ W +L
Sbjct: 392 LCVREAQTVFDLMPHR-NVVTWNSL 415



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 146/301 (48%), Gaps = 2/301 (0%)

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
           + + L  E +K++       I P+   +++   AC+  +   + +Q H    +  + SD+
Sbjct: 16  IPHGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDV 75

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            I +A +  Y KC  VE A ++F+     D V+   +   +   GF ++ + +F KM   
Sbjct: 76  SIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLN 135

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
            ++ +P  VS++L        L  GK+IH  +++     + FV++  +N Y+KC  + ++
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREA 195

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             VF  M  R+ V+WNS+ + +   G   K L ++ EM L+GV+P  VT   +L ACS +
Sbjct: 196 QTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDL 255

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
             +  G + +      H +         +V++      + EA++  + MP + +V+ W +
Sbjct: 256 QDLKSG-KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR-NVITWNS 313

Query: 533 L 533
           L
Sbjct: 314 L 314


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 333/617 (53%), Gaps = 26/617 (4%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L + V +  +L + A EG   +G  +H   +K            +    ++ N+++  Y
Sbjct: 244 LLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK----------LGLSEEVMVNNAMVYMY 293

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A   F     ++ VSWNTM+S F   G+ +  F   +  +++   ++     
Sbjct: 294 SKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQE-MQIQGEEMKANEV 352

Query: 160 TI--ILSAC-DRSELSLVSKM-----IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           TI  +L AC D+ +L  + ++      HC        + V + NA I +Y KCG+ +S  
Sbjct: 353 TILNVLPACLDKLQLRSLKELHGYSFRHCF-------QHVELSNAFILAYAKCGALNSAE 405

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           KVF  +  + V +W A+I G  QN    + L L  +M      P+  T  S ++AC+ L+
Sbjct: 406 KVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLK 465

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           +L  G++IHG + +  L++D  + ++L+  Y  CG    A  +F+  ++ + VS   ++ 
Sbjct: 466 SLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMIS 525

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G++QNG   E++ LF K +  GI+     + +V G     ++L LGK+ H  ++K+  T 
Sbjct: 526 GYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTE 585

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV   +I+MY+K G +++S KVF  +  +N  SWN++I A   HG+G +A+ELYE MK
Sbjct: 586 DAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMK 645

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G  P   T++ +L AC H GLV +G+++ K M   + I P+ EHYAC++DM+ RAG L
Sbjct: 646 KVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRL 705

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            +A   +  MP + D  +W +LL +C   G  E+G+  A+KL   +PD    Y+L++N+Y
Sbjct: 706 DDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLY 765

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +  G+W    +  + MKE+G+ K+ G SWIE+  +V+SFVV D + P++  I  +   L 
Sbjct: 766 AGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLE 825

Query: 632 RLMIDEGYVPNKRFILH 648
             + + GY PN   +LH
Sbjct: 826 ERISEIGYKPNTSSVLH 842



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 231/493 (46%), Gaps = 20/493 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   IK     D            + N+L+  Y KC  +  A+K+FD MP  + V
Sbjct: 164 LGEVIHGMVIKMGLVLD----------VFVGNALVGMYGKCGAVDEAMKVFDFMPETNLV 213

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWN+M+  F  NG     F      L       D  +   IL  C       +   IH L
Sbjct: 214 SWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGL 273

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G  EEV V NA++  Y KCG  +  +  F +   +NV++W  +IS         E 
Sbjct: 274 AVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEA 333

Query: 242 LKLFVKMHLG--LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
             L  +M +    +  N +T L+ + AC     L   +++HG  ++   Q  + + +A +
Sbjct: 334 FNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQH-VELSNAFI 392

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
             Y+KCG++  A ++F    +    S   ++ G AQNG   +A+ L  +M  +G + D  
Sbjct: 393 LAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWF 452

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +S++L       SL  GK+IH  ++++   ++ FV   L++ Y  CG    +  +F RM
Sbjct: 453 TISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM 512

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             +N VSWN+MI+ ++++G  +++L L+ +   EG++  ++  +S+  ACS +  +  G 
Sbjct: 513 KDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGK 572

Query: 480 EFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           E    + +   +        C ++DM  ++G + E+R   + +  K +V  W A++ A  
Sbjct: 573 EAHGYVLKA--LQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDK-NVASWNAIIVAHG 629

Query: 539 IHGDSEMGKYAAE 551
           IHG    GK A E
Sbjct: 630 IHGH---GKEAIE 639



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 207/397 (52%), Gaps = 18/397 (4%)

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVY-LCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           + +  ++L AC   +     + +H  V     Y  +  +   LI  Y  CGS    R VF
Sbjct: 43  KEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVF 102

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQAL 273
             M  +N+I W A++SG  +N LY + +K+F+ +       P++ T+ S + AC G+  +
Sbjct: 103 DNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDV 162

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G  IHG++ K+ L  D+ + +AL+ MY KCG+V++A ++F+F  E + VS   ++  F
Sbjct: 163 RLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAF 222

Query: 334 AQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           ++NGF  ++  L ++M+ + G+  D   V  +L V   +  + +G  IH L +K   +  
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             VNN ++ MYSKCG L ++   F +   +N VSWN+MI+AF+  G+  +A  L +EM++
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 453 EGVE--PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMV 505
           +G E    +VT L++L AC     ++K    L+S+ E+H  S R      E     +   
Sbjct: 343 QGEEMKANEVTILNVLPAC-----LDKLQ--LRSLKELHGYSFRHCFQHVELSNAFILAY 395

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            + G L  A      +  K  V  W AL+G  + +GD
Sbjct: 396 AKCGALNSAEKVFHGIGDKT-VSSWNALIGGHAQNGD 431



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 143/525 (27%), Positives = 238/525 (45%), Gaps = 31/525 (5%)

Query: 28  IIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPN 87
           +IQ  + + + + L     I  LL     +     G  LH  F+     + N  V N   
Sbjct: 27  LIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLH-KFVSDSTHYRNDYVLNT-- 83

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
                  L+  Y  C    ++  +FD+M  ++ + WN +VSG+ RNG +      F   +
Sbjct: 84  ------RLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               +Q D  +F  ++ AC       + ++IH +V   G   +V VGNAL+  Y KCG+ 
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVM 265
               KVF  M   N+++W ++I    +N    +   L ++M    GL+ P+ +T ++ + 
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLL-PDVVTVVTILP 256

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C+G   +  G  IHG+  KL L  ++ + +A++ MYSKCG + +A   F      + VS
Sbjct: 257 VCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVS 316

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV---DTSLGLGKQIHS 382
              ++  F+  G   EA  L  +M   G E+  N V+ +L V         L   K++H 
Sbjct: 317 WNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVT-ILNVLPACLDKLQLRSLKELHG 375

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
              +  F  +  ++N  I  Y+KCG L  + KVF  +  +   SWN++I   A++G+  K
Sbjct: 376 YSFRHCF-QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRK 434

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRI--SPRAE 496
           AL L  +M   G +P   T  SLL AC+H+  +  G E     L++  E      +    
Sbjct: 435 ALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLS 494

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           HY          G    AR   +RM  K +++ W A++   S +G
Sbjct: 495 HYI-------HCGKASSARVLFDRMKDK-NLVSWNAMISGYSQNG 531


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 318/595 (53%), Gaps = 50/595 (8%)

Query: 90  VIWNSLLSFYLK-CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V+  ++L+ Y K  + + +AVK F+ M  R+  +W+T+++   + G  D  F  ++R   
Sbjct: 259 VVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPL 318

Query: 149 LGFYQLDQASFTIILSACDR----SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                    S T +L+   R     +  ++   IH        E  V   NA+IT Y + 
Sbjct: 319 KSV-----PSRTSMLTGLARYGRIDDAKILFDQIH--------EPNVVSWNAMITGYMQN 365

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                   +F  M  RN I+W  +I+G  +N   E+ L     +H   + P+  +  SS 
Sbjct: 366 EMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSF 425

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            ACS ++AL  G+Q+H +  K   Q +  + +AL+ +Y K  S+    QIF+     D V
Sbjct: 426 FACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTV 485

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKA--------------------GIEI-------- 356
           S    +    QN   +EA  +F  M                        +EI        
Sbjct: 486 SYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHER 545

Query: 357 ---DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
              +P +++ +LG+ G   +  LG+QIH++ IK    S   V N L++MY KC    DS+
Sbjct: 546 ELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSL 604

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           KVF  M  R+  +WN++I  +A+HG G +A+ +Y+ M   GV P +VTF+ LLHACSH G
Sbjct: 605 KVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSG 664

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV++G +F KSM+  + ++P  EHYAC+VD++GRAG +  A  FI  MP++PD ++W AL
Sbjct: 665 LVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSAL 724

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC IH + E+G+ AAEKLF  +P +   Y++++NIYS  G W E AK  K MKE GV+
Sbjct: 725 LGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVN 784

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K+ G SW++I+ ++HSFV  D+ H Q   I+  L EL  L+   GYVP+  F+LH
Sbjct: 785 KDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLH 839



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 212/446 (47%), Gaps = 59/446 (13%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  V WN++++ Y++ + +  A  LF+ MP R+T+SW  M++G+ RNG  +      + 
Sbjct: 350 PN-VVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA 408

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
               G      +  +    AC   E     K +H L    G +    V NALIT Y K  
Sbjct: 409 LHRKGMLPSLSSLTSSFF-ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYR 467

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S  S R++F  M V++ +++ + +S LVQN L++E   +F  M     +P+ +++ + + 
Sbjct: 468 SIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMP----SPDVVSWTTIIS 523

Query: 266 ACS-----------------------------------GLQALCEGRQIHGILWKLALQS 290
           AC+                                    L A   G+QIH I  KL + S
Sbjct: 524 ACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDS 583

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
            L + +AL+ MY KC S  D+ ++F+  EE D  +   I+ G+AQ+G   EA++++  MV
Sbjct: 584 GLVVANALVSMYFKCSSA-DSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMV 642

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKC 406
            AG+   PN V+ V G+    +  GL  + H     + SD+   P + +   ++++  + 
Sbjct: 643 SAGVL--PNEVTFV-GLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRA 699

Query: 407 GDLEDSIK-VFSRMAPRNSVSWNSMIAAFARHGN---GFKALELYEEMKLEGVEPTDV-T 461
           GD++ +   ++      +SV W++++ A   H N   G +A E     KL  +EP++   
Sbjct: 700 GDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAE-----KLFSIEPSNAGN 754

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTE 487
           ++ L +  S  G+ ++  +  K M E
Sbjct: 755 YVMLSNIYSSQGMWDEVAKVRKLMKE 780



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 217/476 (45%), Gaps = 51/476 (10%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN---VPNATVIWNSLLSFYLKC 102
           D  R L+ +   G+   G  L + + +     D + V++   V N TV WN++++ Y++ 
Sbjct: 81  DAGRSLADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRN-TVAWNAMVTCYVQN 139

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE---------LGFYQ 153
             +  A KLFD MP RD  SWNTM++G+  +   +     F+R  E         +  Y 
Sbjct: 140 GDITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYV 199

Query: 154 L---------------------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
           L                     +Q +   +LSA        + + IH LV+  G+E +V 
Sbjct: 200 LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVV 259

Query: 193 VGNALITSYFK-CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           VG A++  Y K      S  K F  M  RN  TW+ +I+ L Q    ++   ++ +  L 
Sbjct: 260 VGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK 319

Query: 252 LINPNS--LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
            +   +  LT L+        + L +  QIH        + ++   +A++  Y +   V+
Sbjct: 320 SVPSRTSMLTGLARYGRIDDAKILFD--QIH--------EPNVVSWNAMITGYMQNEMVD 369

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           +A  +F      + +S   ++ G+A+NG  E+A+     + + G+    + +++      
Sbjct: 370 EAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACS 429

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
              +L  GKQ+HSL +K+    N +V N LI +Y K   +    ++F RM  +++VS+NS
Sbjct: 430 NIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNS 489

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
            ++A  ++    +A +++  M      P  V++ +++ AC+     N+ +E  +SM
Sbjct: 490 FMSALVQNNLFDEARDVFNNMP----SPDVVSWTTIISACAQADQGNEAVEIFRSM 541



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 185/455 (40%), Gaps = 92/455 (20%)

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           +  ++  A ++FD MP RD ++WN+M+  +  NG  D G     RSL       +  + T
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG-----RSLADAISGGNLRTGT 99

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           I+LS                                    Y + G     R+VF  M VR
Sbjct: 100 ILLSG-----------------------------------YARAGRVRDARRVFDGMGVR 124

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           N + W A+++  VQN       KLF  M      P+                        
Sbjct: 125 NTVAWNAMVTCYVQNGDITLARKLFDAM------PSR----------------------- 155

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                     D+   + ++  Y     +E+A  +FE   E +GVS TV++ G+       
Sbjct: 156 ----------DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHG 205

Query: 341 EAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            A  +F  M+  G+  + PN+VS +  V  +    G+ + IH L+ K+ F  +  V   +
Sbjct: 206 RAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKP-GILESIHVLVHKTGFERDVVVGTAI 264

Query: 400 INMYSKCGDLEDS-IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +N Y+K  ++ DS +K F  MA RN  +W+++IAA ++ G    A  +Y+   L+ V P+
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PS 323

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             + L+ L   +  G ++        + E     P    +  ++    +  ++ EA    
Sbjct: 324 RTSMLTGL---ARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLF 375

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
            RMP + + + W  ++   + +G SE    + + L
Sbjct: 376 NRMPFR-NTISWAGMIAGYARNGRSEQALVSLQAL 409


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/543 (33%), Positives = 306/543 (56%), Gaps = 4/543 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FDD+P      WN ++ G+ RN  F      +  +++L     D  +F  +L AC 
Sbjct: 72  ARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS-NMQLARVSPDSFTFPHLLKACS 130

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITW 225
                 + + +H  V+  G++ +V V N LI  Y KC    S R VF  + +  R +++W
Sbjct: 131 GLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSW 190

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA++S   QN    E L++F  M    + P+ +  +S + A + LQ L +GR IH  + K
Sbjct: 191 TAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVK 250

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           + L+ +  +  +L  MY+KCG V  A  +F+  +  + +    ++ G+A+NG+  EA+ +
Sbjct: 251 MGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDM 310

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M+   +  D   +++ +       SL   + ++  + +SD+  + F+++ LI+M++K
Sbjct: 311 FHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +E +  VF R   R+ V W++MI  +  HG   +A+ LY  M+  GV P DVTFL L
Sbjct: 371 CGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGL 430

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+H G+V +G  F   M + H+I+P+ +HYACV+D++GRAG L +A   I+ MPV+P
Sbjct: 431 LMACNHSGMVREGWWFFNLMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQP 489

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
            V VW ALL AC  H   E+G+YAA++LF   P +   Y+ ++N+Y+ +  W   A+   
Sbjct: 490 GVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRV 549

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
           RMKE G++K+ G SW+E+  ++ +F V DK HP+ + I   +  +   + + G+V NK  
Sbjct: 550 RMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDA 609

Query: 646 ILH 648
            LH
Sbjct: 610 SLH 612



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 204/390 (52%), Gaps = 14/390 (3%)

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           ++I SA  +++L    K IH  + + G +    +   LI +    G  +  R+VF ++  
Sbjct: 26  SLIDSATHKAQL----KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPR 81

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
             +  W A+I G  +N  +++ L ++  M L  ++P+S T+   + ACSGL  L  GR +
Sbjct: 82  PQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFV 141

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNG 337
           H  +++L   +D+ +++ L+ +Y+KC  +  A  +FE     E   VS T I+  +AQNG
Sbjct: 142 HAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNG 201

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA+++F  M K  ++ D   + +VL  F     L  G+ IH+ ++K      P +  
Sbjct: 202 EPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI 261

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L  MY+KCG +  +  +F +M   N + WN+MI+ +A++G   +A++++ EM  + V P
Sbjct: 262 SLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRP 321

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISPRAEHY--ACVVDMVGRAGLLIEA 514
             ++  S + AC+ VG     +E  +SM E V R   R + +  + ++DM  + G +  A
Sbjct: 322 DTISITSAISACAQVG----SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           R   +R  +  DV+VW A++    +HG + 
Sbjct: 378 RLVFDRT-LDRDVVVWSAMIVGYGLHGRAR 406



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 208/419 (49%), Gaps = 26/419 (6%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   +   H  +G  +HA   +    FD            + N L++ Y KC ++ +A 
Sbjct: 125 LLKACSGLSHLQMGRFVHAQVFRL--GFDAD--------VFVQNGLIALYAKCRRLGSAR 174

Query: 110 KLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
            +F+ +P+  R  VSW  +VS + +NGE       F    ++   + D  +   +L+A  
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDV-KPDWVALVSVLNAFT 233

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             +     + IH  V   G E E  +  +L T Y KCG  ++ + +F +M+  N+I W A
Sbjct: 234 CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNA 293

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG  +N    E + +F +M    + P++++  S++ AC+ + +L + R ++  + +  
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            + D+ I SAL+DM++KCGSVE A  +F+   + D V  + ++VG+  +G   EA+ L+ 
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI-IKSDFTSNPFVNN--GLINMYS 404
            M + G+   PN V+  LG+       G+ ++      + +D   NP   +   +I++  
Sbjct: 414 AMERGGVH--PNDVT-FLGLLMACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLG 470

Query: 405 KCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALEL--YEEMKLEGVEPTDV 460
           + G L+ + +V   M  +  V+ W ++++A  +H    + +EL  Y   +L  ++P++ 
Sbjct: 471 RAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH----RHVELGEYAAQQLFSIDPSNT 525


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/553 (35%), Positives = 321/553 (58%), Gaps = 20/553 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLEL 149
           + N+L++ Y +C ++  A ++FD+M  +D VSWN M+SG+ + G   +     F   L+ 
Sbjct: 213 VGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKE 272

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  +LD  SFT  +SAC   +   + + IH L    GY+  V V N LI++Y KC     
Sbjct: 273 GM-KLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIED 331

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + VF  +  RNV++WT +IS        E+   LF +M    + PN +T++  + A + 
Sbjct: 332 AKLVFESIIDRNVVSWTTMIS-----ISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITM 386

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              + EG+ IHG+  K +  S+L + ++L+ MY+K  S+ D+ ++FE     + +S   +
Sbjct: 387 KNLVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSL 446

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGL--GKQIHSLII 385
           + G+AQNG  +EA+Q F+    A +E  PN  +  +VL       ++ +  G++ HS I+
Sbjct: 447 ISGYAQNGLWQEALQTFLS---ALMESRPNEFTFGSVLSSIASAEAISMRHGQRCHSHIL 503

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K    +NP V++ L++MY+K G + +S+ VFS    +N V+W ++I+A ARHG+    + 
Sbjct: 504 KLGLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMN 563

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+++M+ EGV+P  +TFL+++ AC   G+V+ G +   SM + H I P  EHY+ +VDM+
Sbjct: 564 LFKDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDML 623

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L EA  F+ ++P    + V Q+LLGAC IHG+ +M K  A+ L   +P     Y+
Sbjct: 624 GRAGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYV 683

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ-----VHSFVVDDKMHPQA 620
           LM+N+Y+  G W++ AK  K M+E GV KE G SW+++        +H F  DDK HPQ+
Sbjct: 684 LMSNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDVGDADGSLYLHGFSSDDKFHPQS 743

Query: 621 DTIHGVLAELLRL 633
           + I+  +AE L L
Sbjct: 744 EEIYR-MAETLGL 755



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 249/496 (50%), Gaps = 35/496 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++ Y K      A+ +F+++   D VSWNT++SGF R+   D    F  R +     
Sbjct: 117 NSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQRS---DDALNFALR-MNFTGV 172

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T +L+ C   E  +    +H  +  CG + EV VGNALIT Y +C      R+
Sbjct: 173 AFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARR 232

Query: 213 VFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           VF EMR +++++W A++SG  Q      E + +F++M    +  + +++  ++ AC   +
Sbjct: 233 VFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGK 292

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               GRQIH +  K+   + + + + L+  YSKC  +EDA  +FE   + + VS T ++ 
Sbjct: 293 EFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMI- 351

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSD 388
               +  EE+A  LF +M + G+   PN V+ V G+    T   L   G+ IH + +K+ 
Sbjct: 352 ----SISEEDATSLFNEMRRDGVY--PNDVTFV-GLIHAITMKNLVEEGQMIHGVCVKTS 404

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S   V+N LI MY+K   + DS+KVF  +  R  +SWNS+I+ +A++G   +AL+ + 
Sbjct: 405 FLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFL 464

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGM------EFLKSMTEVHRISPRAEHYACVV 502
              +E   P + TF S+L + +    ++           LK     + I   A     ++
Sbjct: 465 SALMES-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLNTNPIVSSA-----LL 518

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPDS 560
           DM  + G + E+       P+K +V  W A++ A + HGD E  M  +   +    +PDS
Sbjct: 519 DMYAKRGSICESLGVFSETPLKNEV-AWTAIISAHARHGDYEAVMNLFKDMEREGVKPDS 577

Query: 561 PAPYILMANIYSCSGR 576
                 +A I +C GR
Sbjct: 578 ---ITFLAVITAC-GR 589



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 190/370 (51%), Gaps = 14/370 (3%)

Query: 112 FDDMPMRDTVSWN-TMVSGFLRNGEFDMGFGFFKRSLELGFY-QLDQASFTIILSACDRS 169
            D  P     S N +M++   RN   +     FK+ L+ GF   +DQ +  I+L AC   
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSLE-ALDLFKKQLQWGFVGNIDQVTVAIVLKACCGD 93

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
             S +   IH      G+   VTV N+L+  Y K G       VF  +   ++++W  V+
Sbjct: 94  --SKLGCQIHAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVL 151

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG    Q  ++ L   ++M+   +  +++T  + +  CS  +    G Q+H  + K  L 
Sbjct: 152 SGF---QRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLD 208

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE-EAMQLFVK 348
            ++ + +AL+ MYS+C  + +A ++F+     D VS   +L G+AQ G    EA+ +F++
Sbjct: 209 CEVFVGNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLE 268

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M+K G+++D    +  +   G      LG+QIHSL +K  + ++  V N LI+ YSKC D
Sbjct: 269 MLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCED 328

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +ED+  VF  +  RN VSW +MI+          A  L+ EM+ +GV P DVTF+ L+HA
Sbjct: 329 IEDAKLVFESIIDRNVVSWTTMISISEE-----DATSLFNEMRRDGVYPNDVTFVGLIHA 383

Query: 469 CSHVGLVNKG 478
            +   LV +G
Sbjct: 384 ITMKNLVEEG 393


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 309/575 (53%), Gaps = 2/575 (0%)

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
           E   +  ++ + +   +  +L+ FY KC  +  A +LF  M  RD V+WN M++G    G
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
             D       +  E G    + ++   +L     ++     K +H       ++  V VG
Sbjct: 190 LCDDAVQLIMQMQEEGICP-NSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVG 248

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLI 253
             L+  Y KC      RK+F  M VRN ++W+A+I G V +   +E L+LF +M L   +
Sbjct: 249 TGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAM 308

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           +P  +T  S + AC+ L  L  GR++H  + KL    D+ + + L+ MY+KCG ++DA +
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIR 368

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
            F+     D VS + I+ G  QNG    A+ +F  M  +GI+ D   +  VL       +
Sbjct: 369 FFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G   H  +I   F ++  + N LI+MYSKCG +  + +VF+RM   + VSWN+MI  
Sbjct: 429 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG G +AL L+ ++   G++P D+TF+ LL +CSH GLV +G  +  +M+    I P
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 548

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           R EH  C+VD++GRAGL+ EA  FI  MP +PDV +W ALL AC IH + E+G+  ++K+
Sbjct: 549 RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P+S   ++L++NIYS +GRW + A      K+ G+ K  G SWIEI   VH+FV  
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGG 668

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ H Q   I+  L ELL  M   GY     F+  
Sbjct: 669 DQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQ 703



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 131/460 (28%), Positives = 238/460 (51%), Gaps = 5/460 (1%)

Query: 84  NVPNA-TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           N  NA + + + L   YL C+Q+  A +LFD++P    + WN ++  +  NG FD     
Sbjct: 37  NTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDL 96

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           +   L LG  + ++ ++  +L AC           IH    + G E +V V  AL+  Y 
Sbjct: 97  YHSMLHLGV-RPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG     +++F  M  R+V+ W A+I+G     L ++ ++L ++M    I PNS T + 
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVG 215

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +      +AL  G+ +HG   + +  + + + + L+DMY+KC  +  A +IF+     +
Sbjct: 216 VLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            VS + ++ G+  +   +EA++LF +M+ K  ++  P  + +VL      T L  G+++H
Sbjct: 276 EVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             IIK     +  + N L++MY+KCG ++D+I+ F  M P++SVS++++++   ++GN  
Sbjct: 336 CYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAA 395

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL ++  M+L G++P   T L +L ACSH+  +  G      +  V   +        +
Sbjct: 396 VALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLI-VRGFATDTLICNAL 454

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +DM  + G +  AR    RM  + D++ W A++    IHG
Sbjct: 455 IDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHG 493



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 201/387 (51%), Gaps = 5/387 (1%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L AC +S+    +K IH          + +V + L   Y  C      R++F E+   +
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           VI W  +I     N  ++  + L+  M HLG + PN  TY   + ACSGL A+ +G +IH
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                  L+SD+ + +AL+D Y+KCG + +A ++F      D V+   ++ G +  G  +
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCD 192

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +A+QL ++M + GI  + + +  VL   G   +LG GK +H   ++  F +   V  GL+
Sbjct: 193 DAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLL 252

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTD 459
           +MY+KC  L  + K+F  M  RN VSW++MI  +       +ALEL+++M L + ++PT 
Sbjct: 253 DMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTP 312

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VT  S+L AC+ +  +++G +    + ++  +         ++ M  + G++ +A  F +
Sbjct: 313 VTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT-LLSMYAKCGVIDDAIRFFD 371

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMG 546
            M  K D + + A++  C  +G++ + 
Sbjct: 372 EMNPK-DSVSFSAIVSGCVQNGNAAVA 397



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 28/329 (8%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
            YL  + AC   ++L E ++IH    K    +D  +   L  +Y  C  V  A ++F+  
Sbjct: 10  NYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSL 374
                +    I+  +A NG  + A+ L+  M+  G+  +    P ++ A  G+  ++   
Sbjct: 70  PNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED-- 127

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G +IHS        S+ FV   L++ Y+KCG L ++ ++FS M+ R+ V+WN+MIA  
Sbjct: 128 --GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGC 185

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           + +G    A++L  +M+ EG+ P   T + +L        +  G         +H    R
Sbjct: 186 SLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHG-------KALHGYCVR 238

Query: 495 AEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
                 VV      DM  +   L+ AR   + M V+ +V  W A++G    +  S+  K 
Sbjct: 239 RSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEV-SWSAMIGG---YVASDCMKE 294

Query: 549 AAE---KLFLAQPDSPAPYILMANIYSCS 574
           A E   ++ L     P P  L + + +C+
Sbjct: 295 ALELFDQMILKDAMDPTPVTLGSVLRACA 323


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 323/560 (57%), Gaps = 18/560 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++R++S  AK G   +G  LH++ IK    FD+ NVY       I ++L+  Y KC  + 
Sbjct: 82  LNRMVSSCAKSGSVFVGIQLHSTIIKV--GFDS-NVY-------ICSALVDMYGKCGAVS 131

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILS 164
           +A +LFD+MP R+ V+WN+++SG+L  G  ++    F   +++G   +D   F++  +L 
Sbjct: 132 SAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVG---IDPTPFSVSAVLV 188

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C R E + +   +H L   CG+   + VG  LI  Y K  +  + R +F  M  RN+IT
Sbjct: 189 GCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIIT 248

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           WT++++G    Q     + L   M    I  N +TY   + + S    L   +Q+H  + 
Sbjct: 249 WTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRII 308

Query: 285 KLALQSDLCIESALMDMYSKCGS--VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           +  L+S+  +E  L+ +YS+C S  +ED  ++       D +S   ++ G +  G  E A
Sbjct: 309 REGLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAA 368

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++ F KM +AGI++D    ++VL   G+ ++L  GKQIH+L++K+ + SN  V NGL++M
Sbjct: 369 LKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSM 428

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y++CG + D+ +VFS M   + +SWNS+++  A HG G +A+EL+E+M+  GV+P + TF
Sbjct: 429 YARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTF 488

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRI-SPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           L +L AC HVGL++KG+E+   M   + + SP  EHY+ +VD+  RAG L EA  FI  M
Sbjct: 489 LVVLSACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTM 548

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P++P   V++ALL AC +HG+ E+    A+KL    P+ P  Y+L++N+ +  G W   A
Sbjct: 549 PIEPGPSVYKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVA 608

Query: 582 KAIKRMKEMGVDKETGISWI 601
              K M + GV KE G SWI
Sbjct: 609 SIRKVMCDRGVRKEPGYSWI 628



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 162/326 (49%), Gaps = 30/326 (9%)

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           LKL  ++      P +      V +C+   ++  G Q+H  + K+   S++ I SAL+DM
Sbjct: 64  LKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDM 123

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG+V  A ++F+     + V+   ++ G+   G  E A++LF++MVK GI+  P  V
Sbjct: 124 YGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSV 183

Query: 362 SAVL-GVFGV-DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           SAVL G + + DT LG+  Q+H L +K  F  N  V   LI++YSK  +++ S  +F  M
Sbjct: 184 SAVLVGCWRMEDTKLGI--QVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLM 241

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS--------- 470
             RN ++W SM+A +A       A+ L  +M+  G+    VT+  LL + S         
Sbjct: 242 PERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCK 301

Query: 471 --HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
             H  ++ +G+E   S  EV  ++  +E  +  ++   +        S + R     D +
Sbjct: 302 QVHCRIIREGLES-NSYLEVTLVTVYSECSSSSLEDFNKVC------SGVTRW----DQI 350

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLF 554
            W A++G  S  G+ E    AA K F
Sbjct: 351 SWNAVIGGLSNLGNGE----AALKCF 372



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 13/153 (8%)

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           S NS IA           L+L  +++  G  PT      ++ +C+  G V  G++   ++
Sbjct: 46  SCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTI 105

Query: 486 TEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            +V   S     Y C  +VDM G+ G +  A+   + MP + +V+ W +L+      G  
Sbjct: 106 IKVGFDS---NVYICSALVDMYGKCGAVSSAQRLFDEMPHR-NVVTWNSLISGYLHVGCP 161

Query: 544 EMGKYAAEKLFLAQPD---SPAPYILMANIYSC 573
           E+    A +LFL        P P+ + A +  C
Sbjct: 162 EI----AIELFLEMVKVGIDPTPFSVSAVLVGC 190


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 181/561 (32%), Positives = 314/561 (55%), Gaps = 7/561 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ NSLL+ Y KC  + +A +LF+ M  R   SWN M++ + ++G F+     ++  +++
Sbjct: 158 ILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYE-DMDV 216

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              +    +FT +LSAC    L    + IH L+   G E ++++ NAL+T Y +C     
Sbjct: 217 ---EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDD 273

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F  +  R+V++W+A+I+   +  L++E ++ + KM L  + PN  T+ S ++AC+ 
Sbjct: 274 AAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACAS 333

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  L  GR +H  +     +  L   +AL+D+Y+  GS+++A  +F+  E  D    TV+
Sbjct: 334 VGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVL 393

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKS 387
           + G+++ G     ++L+ +M K   ++    +  S V+       +    +Q HS I   
Sbjct: 394 IGGYSKQGHRTGVLELYREM-KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEAD 452

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              S+  +   L+NMYS+ G+LE + +VF +M+ R++++W ++IA +A+HG    AL LY
Sbjct: 453 GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLY 512

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +EM+LEG EP+++TF+ +L+ACSH GL  +G +   S+   + + P   HY+C++D++ R
Sbjct: 513 KEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSR 572

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L +A   I  MPV+P+ + W +LLGA  IH D +   +AA ++    P  PA Y+L+
Sbjct: 573 AGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLL 632

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+++ +G     A     M   GV K  G SWIE+  Q+H F V D  HP+   I   L
Sbjct: 633 SNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAEL 692

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L   + + GYVP    +LH
Sbjct: 693 QRLSPKIKEAGYVPESEEVLH 713



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/486 (26%), Positives = 243/486 (50%), Gaps = 16/486 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N ++  Y KC  + +A   FD +  ++  SW +M++ + +NG +      +KR ++L   
Sbjct: 62  NEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR-MDL--- 117

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVY-LCGYEEEVTVGNALITSYFKCGSSSSGR 211
           Q +   +T +L AC   +     K IH  +    G + +V + N+L+T Y KCGS    +
Sbjct: 118 QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++F  M  R+V +W A+I+   Q+  +EE ++L+  M    + P+  T+ S + ACS L 
Sbjct: 178 RLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLG 234

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            L +GR+IH ++     + DL +++AL+ MY++C  ++DA +IF+     D VS + ++ 
Sbjct: 235 LLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 294

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            FA+    +EA++ + KM   G+  +    ++VL        L  G+ +H  I+ + +  
Sbjct: 295 AFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKI 354

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
                  L+++Y+  G L+++  +F ++  R+   W  +I  +++ G+    LELY EMK
Sbjct: 355 TLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMK 414

Query: 452 -LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               V  T + +  ++ AC+ +G      +    +     IS      + +V+M  R G 
Sbjct: 415 NTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATS-LVNMYSRWGN 473

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDS--EMGKYAAEKLFLAQPDSPAPYILMA 568
           L  AR   ++M  + D L W  L+   + HG+    +G Y   +L  A+   P+    M 
Sbjct: 474 LESARQVFDKMSSR-DTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAE---PSELTFMV 529

Query: 569 NIYSCS 574
            +Y+CS
Sbjct: 530 VLYACS 535



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 201/359 (55%), Gaps = 23/359 (6%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GN ++ +Y KCGS +S R  F  +  +N  +W ++++   QN  Y   L L+ +M L
Sbjct: 58  VFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL 117

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVE 309
               PN + Y + + AC+ ++AL EG+ IH  I     L+ D+ +E++L+ MY+KCGS+E
Sbjct: 118 ---QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           DA ++FE        S   ++  +AQ+G  EEA++L+  M     +++P+ V     V  
Sbjct: 175 DAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-----DVEPS-VRTFTSVLS 228

Query: 370 VDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             ++LGL   G++IH+LI       +  + N L+ MY++C  L+D+ K+F R+  R+ VS
Sbjct: 229 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 288

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM----EFL 482
           W++MIAAFA      +A+E Y +M+LEGV P   TF S+L AC+ VG +  G     + L
Sbjct: 289 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 348

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +  ++  ++  A     +VD+    G L EARS  +++  + + L W  L+G  S  G
Sbjct: 349 GNGYKITLVNGTA-----LVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGGYSKQG 401



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 153/284 (53%), Gaps = 25/284 (8%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y  ++  C  L+++   RQIH  +   A  +++ + + ++  Y KCGSV  A   F+   
Sbjct: 30  YRDALRQCQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIA 85

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             +  S   +L  +AQNG    A+ L+ +M    ++ +P + + VLG      +L  GK 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKA 142

Query: 380 IHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           IHS I  +     +  + N L+ MY+KCG LED+ ++F RM+ R+  SWN+MIAA+A+ G
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSG 202

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEH 497
           +  +A+ LYE+M    VEP+  TF S+L ACS++GL+++G        ++H  IS R   
Sbjct: 203 HFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQG-------RKIHALISSRGTE 252

Query: 498 -----YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                   ++ M  R   L +A    +R+P + DV+ W A++ A
Sbjct: 253 LDLSLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAA 295



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 9/197 (4%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +QIH  I     ++N F+ N ++  Y KCG +  +   F  +A +N  SW SM+ A+A++
Sbjct: 44  RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQN 102

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G+   AL+LY+ M L   +P  V + ++L AC+ +  + +G      ++    +      
Sbjct: 103 GHYRAALDLYKRMDL---QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVIL 159

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
              ++ M  + G L +A+   ERM  +  V  W A++ A +  G  E     A +L+   
Sbjct: 160 ENSLLTMYAKCGSLEDAKRLFERMSGRS-VSSWNAMIAAYAQSGHFE----EAIRLYEDM 214

Query: 558 PDSPAPYILMANIYSCS 574
              P+     + + +CS
Sbjct: 215 DVEPSVRTFTSVLSACS 231


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 186/531 (35%), Positives = 311/531 (58%), Gaps = 11/531 (2%)

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS--KMIHCLVYL 184
           ++ F  NG       FF+R  + G  + D+ +F++IL+A  +   + +   + IH    +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSG-ERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARI 59

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G    V VG A+I+ Y KCG     R  F E++ +N +TW A+++    +    E L+L
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 245 FVKM--HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMD 300
           F +M        P+  ++  ++ ACS L+ L +GR+IH +L +    L  D+ + +AL++
Sbjct: 120 FREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLN 179

Query: 301 MYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           MYSKCG +E+A ++F+    + D V    ++  +AQ+G  ++A+ L+  M     ++ P 
Sbjct: 180 MYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDT-TDLAPK 238

Query: 360 MVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
             +   V+ V    ++L  G+ IH+ +  ++F +N  V+N L++MY KCG L++++ VF 
Sbjct: 239 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 298

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  ++ +SWN++I+++A HG+  +AL LY+EM L+GV+PT+VTF+ LL ACSH GLV  
Sbjct: 299 SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 358

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G+++   M + HRI P   H+ C++D++GR G L EA   ++ MP++ + + W +LLGAC
Sbjct: 359 GLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 418

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
             HGD + G  AA+++    P +   Y+L++NIY+ +GRWK+  K  K M   GV K  G
Sbjct: 419 KTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPG 478

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            SWIEI   VH FV  D+ HPQ + I+  L +++  M   GYVP+   + H
Sbjct: 479 KSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFH 529



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 185/365 (50%), Gaps = 14/365 (3%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +PN  V+  +++S Y KC ++ +A   F+++  +++V+WN M++ +  +G        F+
Sbjct: 63  LPN-VVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFR 121

Query: 145 RSLELGF-YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE--EEVTVGNALITSY 201
              E     + D+ SF+I + AC   E     + IH ++   G E  ++V VG AL+  Y
Sbjct: 122 EMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMY 181

Query: 202 FKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSLT 259
            KCG     RKVF  +R   + + W A+I+   Q+   ++ L L+  MH    + P   T
Sbjct: 182 SKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGT 241

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           +++ +  C+ L AL +GR IH  +      ++L + +AL+ MY KCG +++A  +F   +
Sbjct: 242 FVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMK 301

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D +S   I+  +A +G  ++A+ L+ +M   G++  P  V+ V G+    +  GL   
Sbjct: 302 LKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVK--PTEVTFV-GLLSACSHGGLVAD 358

Query: 380 --IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAF 434
              +   ++ D    P V +   +I++  + G L ++  V   M  + N+V W S++ A 
Sbjct: 359 GLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 418

Query: 435 ARHGN 439
             HG+
Sbjct: 419 KTHGD 423


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 203/625 (32%), Positives = 327/625 (52%), Gaps = 89/625 (14%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           RLL    KE H H+   L   F        + +VY       + N+L++ Y  C  MR+A
Sbjct: 154 RLLEFGGKEIHDHV---LKVGF--------DSDVY-------VQNTLINMYAVCGNMRDA 195

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
            KLFD+ P+ D+VSWN++++G+++ G+ +          +L F Q+ Q            
Sbjct: 196 RKLFDESPVLDSVSWNSILAGYVKKGDVE--------EAKLIFDQMPQ------------ 235

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                                 +   N++I    K G      K+F EM  +++++W+A+
Sbjct: 236 --------------------RNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           ISG  QN +YEE L +F++M+   +  + +  +S + AC+ L  +  G+ IHG++ ++ +
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 335

Query: 289 QSDLCIESALMDMYS-------------------------------KCGSVEDAWQIFEF 317
           +S + +++AL+ MYS                               KCGSVE A  +F+ 
Sbjct: 336 ESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDV 395

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
             E D VS + ++ G+AQ+    E + LF +M    I  D  ++ +V+       +L  G
Sbjct: 396 MPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG 455

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K +H+ I K+    N  +   L++MY KCG +E++++VF+ M  +   SWN++I   A +
Sbjct: 456 KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVN 515

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G   ++L+++ EMK  GV P ++TF+ +L AC H+GLV++G     SM E H I P  +H
Sbjct: 516 GLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKH 575

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           Y C+VD++GRAGLL EA   IE MP+ PDV  W ALLGAC  HGD+EMG+    KL   Q
Sbjct: 576 YGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQ 635

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           PD    ++L++NI++  G W++  +    MK+ GV K  G S IE    VH F+  DK H
Sbjct: 636 PDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTH 695

Query: 618 PQADTIHGVLAELLRLMIDEGYVPN 642
           P  + + G+L E+ + +  EGY P+
Sbjct: 696 PWINKVEGMLNEMAKRLKMEGYAPD 720



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 211/465 (45%), Gaps = 73/465 (15%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           ++++FD +   +   WNTM+  ++++   +     +K  ++      D  ++ +++ AC 
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGP-DNYTYPLVVQACA 152

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
              L    K IH  V   G++ +V V N LI  Y  CG+    RK+F E  V + ++W +
Sbjct: 153 VRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNS 212

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +++G V+    EE   +F +M      P                                
Sbjct: 213 ILAGYVKKGDVEEAKLIFDQM------P-------------------------------- 234

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            Q ++   ++++ +  K G V +AW++F   +E D VS + ++ G+ QNG  EEA+ +F+
Sbjct: 235 -QRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 293

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS--- 404
           +M   G+ +D  +V +VL      + +  GK IH L+I+    S   + N LI+MYS   
Sbjct: 294 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSG 353

Query: 405 ----------------------------KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
                                       KCG +E +  +F  M  ++ VSW+++I+ +A+
Sbjct: 354 EIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ 413

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           H    + L L+ EM+L  + P +   +S++ AC+H+  +++G +++ +    + +     
Sbjct: 414 HDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRKNGLKVNVI 472

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               ++DM  + G +  A      M  K  V  W AL+   +++G
Sbjct: 473 LGTTLLDMYMKCGCVENALEVFNGMEEK-GVSSWNALIIGLAVNG 516



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 157/348 (45%), Gaps = 45/348 (12%)

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++F  +   N   W  ++   +Q+   E+ L L+  M    + P++ TY   V AC+   
Sbjct: 96  QIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRL 155

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G++IH  + K+   SD+ +++ L++MY+ CG++ DA ++F+ +  LD VS   IL 
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+ + G  EEA  +F +M +                                        
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQ---------------------------------------R 236

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N   +N +I +  K G + ++ K+F+ M  ++ VSW+++I+ + ++G   +AL ++ EM 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+   +V  +S+L AC+H+ +V  G + +  +     I         ++ M   +G +
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSGEI 355

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           ++A+          D + W +++  C   G  E     A  LF   P+
Sbjct: 356 MDAQKLFNG-SHNLDQISWNSMISGCMKCGSVE----KARALFDVMPE 398



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 18/227 (7%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCG--DLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           +I S +I + F S+ F  + L+   +      L+ S+++F R+   N   WN+M+ A+ +
Sbjct: 59  RILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQ 118

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
             +  KAL LY+ M    V P + T+  ++ AC+   L   G E       V ++   ++
Sbjct: 119 SNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEI---HDHVLKVGFDSD 175

Query: 497 HYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            Y    +++M    G + +AR   +  PV  D + W ++L      GD E  K   +++ 
Sbjct: 176 VYVQNTLINMYAVCGNMRDARKLFDESPV-LDSVSWNSILAGYVKKGDVEEAKLIFDQM- 233

Query: 555 LAQPDSPAPYILMAN-IYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
                 P   I+ +N +    G+  +  +A K   EM  D++  +SW
Sbjct: 234 ------PQRNIVASNSMIVLLGKMGQVMEAWKLFNEM--DEKDMVSW 272


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/579 (34%), Positives = 325/579 (56%), Gaps = 54/579 (9%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           LHA  I+T   F+ Q++        + N L+S Y+K   +  A ++FD+MP+++ VSW  
Sbjct: 86  LHAHMIQT--QFECQDIS-------LGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTA 136

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M++ + R+       GFF    ++G  Q +  +F  IL AC  ++L ++ +  H  +   
Sbjct: 137 MIAAYARHEHGQEALGFFYEMQDVGI-QPNHFTFASILPAC--TDLEVLGE-FHDEIVKG 192

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+E  V VGN L+  Y K G     R++F +M  R+V++W A+I+G VQN L E+ LKLF
Sbjct: 193 GFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLF 252

Query: 246 VKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
            ++    +I  N  T ++    C  ++   E       L++   + +L   + ++  Y +
Sbjct: 253 QEIPKRDVITWN--TMMAGYAQCGDVENAVE-------LFEKMPEQNLVSWNTMIAGYVQ 303

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK----------AG- 353
            GSV++A+++F+   E + +S   ++ GFAQNG  EEA++LF  M +          AG 
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363

Query: 354 ------------------IEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
                             +++ PN    + VL        L  G + H ++I+S F S+ 
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDV 423

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N L+ MY+KCG +ED+ KVF RM  ++S S ++MI  +A +G   ++LEL+E+M+  
Sbjct: 424 LVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFT 483

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G++P  VTF+ +L AC H GLV++G ++   MT  + I+P  EHY C++D++GRAG   E
Sbjct: 484 GLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDE 543

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   I +MP+KPD  +W +LL AC  H + ++G+  A+ L    P +PAPY+L++NIY+ 
Sbjct: 544 ANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAA 603

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           +GRW +      RMK+  V K+ G SWI I+KQVH+F+V
Sbjct: 604 AGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLV 642



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 230/451 (50%), Gaps = 42/451 (9%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           + +V    + G         +  +E G +    +++  +L  C  ++    +K++H  + 
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIWP-HSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 184 LCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              +E +++++GN L++ Y K GS    R+VF EM V+NV++WTA+I+   +++  +E L
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
             F +M    I PN  T+ S + AC+ L+ L E    H  + K   +S++ + + L+DMY
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMY 208

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +K G +E A ++F+   + D VS   ++ G+ QNG  E+A++LF ++ K  +     M++
Sbjct: 209 AKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMA 268

Query: 363 AVLGVFGVDTSLGLGKQI--------HSLI--------IKSDFT-------SNPFVNNGL 399
                  V+ ++ L +++        +++I        +K  F         N    N +
Sbjct: 269 GYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAV 328

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           I+ +++ G +E+++K+F  M   N VSWN+MIA ++++G    AL+L+ +M++  ++P  
Sbjct: 329 ISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT 388

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIE 513
            TF  +L AC+ + ++ +G        E H +  R+   + V      V M  + G + +
Sbjct: 389 ETFAIVLPACAALAVLEQG-------NEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIED 441

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           AR   +RM  + D     A++   +I+G S+
Sbjct: 442 ARKVFDRMR-QQDSASLSAMIVGYAINGCSK 471



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 20/272 (7%)

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             + G   EA+ +   MV+ GI    +   ++L       SL   K +H+ +I++ F   
Sbjct: 39  LCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQ 98

Query: 393 PF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
              + N L+++Y K G L ++ +VF  M  +N VSW +MIAA+ARH +G +AL  + EM+
Sbjct: 99  DISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQ 158

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNK-GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             G++P   TF S+L AC+ + ++ +   E +K   E +           +VDM  + G 
Sbjct: 159 DVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNG-----LVDMYAKRGC 213

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP--DSPAPYILMA 568
           +  AR   ++MP + DV+ W A++     +G  E     A KLF   P  D      +MA
Sbjct: 214 IEFARELFDKMPQR-DVVSWNAMIAGYVQNGLIE----DALKLFQEIPKRDVITWNTMMA 268

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
               C G  +   +  ++M E  +     +SW
Sbjct: 269 GYAQC-GDVENAVELFEKMPEQNL-----VSW 294


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 197/542 (36%), Positives = 306/542 (56%), Gaps = 4/542 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K+FD+ P      WN ++ G+  +  F      + R    G    D  +   +L AC 
Sbjct: 122 ARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGV-NPDGFTLPCVLKACS 180

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
              +  V K +H  ++  G+E +V V N L+  Y KCG     R VF  +  RN+++WT+
Sbjct: 181 GVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTS 240

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG  QN L  E L++F +M    + P+ +  +S + A + ++ L +G+ IHG + K+ 
Sbjct: 241 MISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMG 300

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L+ +  +  +L  MY+KCG V  A   F+  E  + +    ++ G+A+NG+  EA+ LF 
Sbjct: 301 LEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQ 360

Query: 348 KMVKAGIEIDPNMV-SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           +M+   I  D   V SA+L    V  SL L K +   I K+++ ++ FVN  LI+M++KC
Sbjct: 361 EMISKNIRTDSITVRSAILACAQVG-SLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKC 419

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G ++ + +VF R   ++ V W++MI  +  HG G  A++L+  MK  GV P DVTF+ LL
Sbjct: 420 GSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+H GLV +G E   SM + + I  R +HYACVVD++GR+G L EA  FI  MP++P 
Sbjct: 480 TACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPG 538

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           V VW ALLGAC I+    +G+YAAE+LF   P +   Y+ ++N+Y+ S  W   AK    
Sbjct: 539 VSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRIL 598

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           M+E G+ K+ G S IEI  ++ +F V DK HP+   I   L  L R + + G++P+   +
Sbjct: 599 MREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESV 658

Query: 647 LH 648
           LH
Sbjct: 659 LH 660



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 220/444 (49%), Gaps = 26/444 (5%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  + + G  E   +    + + +  G     RKVF E    +V  W A+I G   +  
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           + + ++++ +M    +NP+  T    + ACSG+  L  G+++HG +++L  +SD+ +++ 
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+ +Y+KCG VE A  +FE  ++ + VS T ++ G+ QNG   EA+++F +M +  ++ D
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              + +VL  +     L  GK IH  ++K      P +   L  MY+KCG +  +   F 
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           +M   N + WN+MI+ +A++G   +A+ L++EM  + +    +T  S + AC+ VG    
Sbjct: 330 QMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVG---- 385

Query: 478 GMEFLKSMTE-VHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            ++  K M + +++   R + +    ++DM  + G +  AR   +R  +  DV+VW A++
Sbjct: 386 SLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRT-LDKDVVVWSAMI 444

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSC--SGRWKERAKAIKRMKE 589
               +HG  +     A  LF A   +   P     +  + +C  SG  +E  +    MK 
Sbjct: 445 VGYGLHGRGQ----DAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKY 500

Query: 590 MGVDKETGISWIEIEKQVHSFVVD 613
            G         IE   Q ++ VVD
Sbjct: 501 YG---------IEARHQHYACVVD 515



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 145/274 (52%), Gaps = 3/274 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N L++ Y KC ++  A  +F+ +  R+ VSW +M+SG+ +NG        F +  +  
Sbjct: 206 VQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRN 265

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   +L A    E     K IH  V   G E E  +  +L   Y KCG     
Sbjct: 266 V-KPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVA 324

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R  F +M + NV+ W A+ISG  +N    E + LF +M    I  +S+T  S+++AC+ +
Sbjct: 325 RSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQV 384

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   + +   + K   ++D+ + +AL+DM++KCGSV+ A ++F+   + D V  + ++
Sbjct: 385 GSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMI 444

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           VG+  +G  ++A+ LF  M +AG  + PN V+ V
Sbjct: 445 VGYGLHGRGQDAIDLFYAMKQAG--VCPNDVTFV 476



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 124/270 (45%), Gaps = 11/270 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S+H   +K    F+       P+  +   SL + Y KC Q+  A   FD M + + + 
Sbjct: 289 GKSIHGCVVKMGLEFE-------PDLLI---SLTAMYAKCGQVMVARSFFDQMEIPNVMM 338

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN M+SG+ +NG  +   G F+  +     + D  +    + AC +     ++K +   +
Sbjct: 339 WNAMISGYAKNGYTNEAVGLFQEMISKNI-RTDSITVRSAILACAQVGSLDLAKWMGDYI 397

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               Y  +V V  ALI  + KCGS    R+VF     ++V+ W+A+I G   +   ++ +
Sbjct: 398 NKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAI 457

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF  M    + PN +T++  + AC+    + EG ++   +    +++     + ++D+ 
Sbjct: 458 DLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLL 517

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            + G + +A+          GVS+   L+G
Sbjct: 518 GRSGHLNEAYDFITTMPIEPGVSVWGALLG 547



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
            QIH+ ++ S    + F+    +N     G++  + KVF      +   WN++I  ++ H
Sbjct: 88  NQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSH 147

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                A+E+Y  M+  GV P   T   +L ACS V ++  G    +   ++ R+   ++ 
Sbjct: 148 NFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGK---RVHGQIFRLGFESDV 204

Query: 498 YA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +    +V +  + G + +AR   E +  + +++ W +++     +G
Sbjct: 205 FVQNGLVALYAKCGRVEQARIVFEGLDDR-NIVSWTSMISGYGQNG 249


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 316/591 (53%), Gaps = 18/591 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG ++HA  I+T         +  P  + + N L++ Y K D + +A  +     +R  V
Sbjct: 24  LGRTIHAHIIRT---------HVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVV 74

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +W +++SG + N  F      F  ++     Q +  +F  +  A    ++ +  K IH L
Sbjct: 75  TWTSLISGCVHNRRFLPALLHFT-NMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGL 133

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G   +V VG +    Y K G       +F EM  RN+ TW A IS  VQ++   + 
Sbjct: 134 ALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDA 193

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +  F +       PNS+T+ + + AC  +  L  GRQ+H  + +   + D+ + + L+D 
Sbjct: 194 IVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDF 253

Query: 302 YSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN- 359
           Y KCG +  A  +F       + VS   +L    QN  EE A  +F++  K   E++P  
Sbjct: 254 YGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARK---EVEPTD 310

Query: 360 -MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            M+S+VL        L LG+ +H+L +K+    N FV + L++MY KCG +E++ +VFS 
Sbjct: 311 FMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSE 370

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL--EGVEPTDVTFLSLLHACSHVGLVN 476
           +  RN V+WN+MI  +A  G+   AL L+EEM L   G+ P+ VT +S+L  CS VG V 
Sbjct: 371 LPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVE 430

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G++  +SM   + I P AEH+ACVVD++GR+GL+  A  FI+ M ++P + VW ALLGA
Sbjct: 431 RGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGA 490

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C +HG +E+GK AAEKLF         +++++N+ + +GRW+E     K MK++G+ K  
Sbjct: 491 CRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNV 550

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           G SWI ++ ++H F   D  H +   I  +L +L   M + GYVP+    L
Sbjct: 551 GYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSL 601


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 313/558 (56%), Gaps = 1/558 (0%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            + ++L+  Y  C  + +A ++FD +  +D V+W  MVS +  N   +     F + + + 
Sbjct: 568  VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSK-MRVA 626

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +L+  + T +L A       ++ K IH       Y+ E  V  AL+  Y KCG+    
Sbjct: 627  VSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA 686

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            R  F  +   +VI W+ +IS   Q    E+  +LF++M    ++PN  +  S + AC+ +
Sbjct: 687  RLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANM 746

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
              L  G+QIH    K+  +S+L + +AL+D+Y+KC  +E + +IF    +++ VS   I+
Sbjct: 747  PLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTII 806

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            VG++++GF E A+ +F +M  A +       S+VL       S+    Q+H LI KS F 
Sbjct: 807  VGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFN 866

Query: 391  SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            S+  V+N LI+ Y+KCG + D+ ++F  +   + VSWN++I+ +A HG    A EL++ M
Sbjct: 867  SDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMM 926

Query: 451  KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
                ++  D+TF++LL  C   GLV++G+    SM   H I P  EHY C+V ++GRAG 
Sbjct: 927  SKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGR 986

Query: 511  LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
            L +A +FI  +P  P  +VW+ALL +C +H + E+G+++AEK+   +P     Y+L++N+
Sbjct: 987  LNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNM 1046

Query: 571  YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            YS +G   + A   K M+ +GV KE G+SW+EI+ +VH+F V  + HP    I+ +L  L
Sbjct: 1047 YSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWL 1106

Query: 631  LRLMIDEGYVPNKRFILH 648
                I EGYVP+   +LH
Sbjct: 1107 NLKAIREGYVPDTDEVLH 1124



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 147/470 (31%), Positives = 251/470 (53%), Gaps = 23/470 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y K     +A ++FD +P R+ VS+ T+V G    GEF+     F+R L    +
Sbjct: 469 NVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQR-LRWEGH 527

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++Q   T +L      +   ++  +H      G++    VG+ALI +Y  CG  S  R+
Sbjct: 528 EVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARR 587

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTYLSSVMACSGL 270
           VF  +  ++ + WTA++S   +N   E  L++F KM + +  +NP +LT +     C  L
Sbjct: 588 VFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVC--L 645

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            ++  G+ IH    K    ++  +  AL+DMY+KCG++EDA   FE     D +  ++++
Sbjct: 646 SSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMI 705

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             +AQ    E+A +LF++M+++ +  +   +S+VL        L LGKQIH+  IK    
Sbjct: 706 SRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHE 765

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S  FV N LI++Y+KC D+E S+++FS +   N VSWN++I  +++ G G  AL ++ EM
Sbjct: 766 SELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREM 825

Query: 451 KLEGVEPTDVTFLSLLHACS------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +   V  T VT+ S+L AC+      HVG V+  +E  KS      I   +     ++D 
Sbjct: 826 RAASVPSTQVTYSSVLRACASTASINHVGQVHCLIE--KSTFNSDTIVSNS-----LIDS 878

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
             + G + +AR   E +  + D++ W A++   ++HG + M    A++LF
Sbjct: 879 YAKCGCIRDAREIFETLK-ECDLVSWNAIISGYAVHGQAAM----AQELF 923



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 197/423 (46%), Gaps = 52/423 (12%)

Query: 73   TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
             FE   N +V       ++W+ ++S Y +C+Q   A +LF  M MR +VS N        
Sbjct: 689  AFEMVTNDDV-------ILWSLMISRYAQCNQNEQAFELFIRM-MRSSVSPN-------- 732

Query: 133  NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
              EF                     S + +L AC    L  + K IH      G+E E+ 
Sbjct: 733  --EF---------------------SLSSVLQACANMPLLDLGKQIHNHAIKIGHESELF 769

Query: 193  VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
            VGNALI  Y KC    S  ++F  +R  N ++W  +I G  ++   E  L +F +M    
Sbjct: 770  VGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAAS 829

Query: 253  INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
            +    +TY S + AC+   ++    Q+H ++ K    SD  + ++L+D Y+KCG + DA 
Sbjct: 830  VPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAR 889

Query: 313  QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +IFE  +E D VS   I+ G+A +G    A +LF  M K  I+ +     A+L V G   
Sbjct: 890  EIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCG--- 946

Query: 373  SLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM--APRNSVS 426
            S GL  Q  SL   ++ D    P + +   ++ +  + G L D++     +  AP +++ 
Sbjct: 947  STGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAP-SAMV 1005

Query: 427  WNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSM 485
            W +++++   H N    L  +   K+  +EP D  T++ L +  S  G +++   F KSM
Sbjct: 1006 WRALLSSCIVHKN--VELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSM 1063

Query: 486  TEV 488
              +
Sbjct: 1064 RNI 1066



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 139/285 (48%), Gaps = 12/285 (4%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAWQ 313
           +S  Y   +  C        GR +HG + +     + DL   + L++MY+K G    A +
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F+   E + VS   ++ G A  G  EEA  LF ++   G E++  +++ VL +     +
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           LGL   +H+   K     N FV + LI+ YS CG + D+ +VF  +  +++V+W +M++ 
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA--CSHVGLVNKGMEF--LKSMTEVH 489
           ++ +      L+++ +M++   +       S+L A  C    ++ KG+    +K++ +  
Sbjct: 607 YSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTE 666

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           R       Y  ++DM  + G + +AR   E M    DV++W  ++
Sbjct: 667 R-----HVYGALLDMYAKCGNIEDARLAFE-MVTNDDVILWSLMI 705


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 312/560 (55%), Gaps = 17/560 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           +V +N ++S +     +  A   FD  P +D VSWN M++ ++RNG  +   G F    E
Sbjct: 131 SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE 190

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 D  S+  ++S     +   +S+       + G   +V   N +++ Y + G   
Sbjct: 191 W-----DAISWNALMSGY--VQWGKMSEARELFDRMPG--RDVVSWNIMVSGYARRGDMV 241

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F    VR+V TWTAV+SG  QN + EE  ++F  M       N++++ + V A  
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMVAAYI 297

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             + + E ++    L+ +    ++   + ++  Y++ G +E+A  +F+   + D VS   
Sbjct: 298 QRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L  ++Q G  EE +QLF++M + G  ++ +  + VL       +L  G Q+H  +I++ 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +    FV N L+ MY KCG++ED+   F  M  R+ VSWN+MIA +ARHG G +ALE+++
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFD 473

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+    +P D+T + +L ACSH GLV KG+ +  SM     ++ + EHY C++D++GRA
Sbjct: 474 MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRA 533

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   ++ MP +PD  +W ALLGA  IH + E+G+ AAEK+F  +P++   Y+L++
Sbjct: 534 GRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLS 593

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ SG+W++  K    M+E GV K  G SWIE++ +VH+F   D +HP+ + I+  L 
Sbjct: 594 NIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLE 653

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M   GYV     +LH
Sbjct: 654 DLDMRMKKAGYVSATDMVLH 673


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 330/608 (54%), Gaps = 31/608 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL    + G      +LH   +KT    D            +  SL++ Y++C   ++A 
Sbjct: 84  LLHRCIETGSLGGAKALHGHMVKTGTIVD----------IFVATSLVNVYMRCGNSQDAR 133

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD+MP ++ V+W  +++G+  N +  +    F   L+LG Y  D  +   +LSAC  S
Sbjct: 134 NLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDY-TLGGMLSACVAS 192

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               + K +H      G     ++GN+L   Y K G+  SG + F  +  +NVITWT +I
Sbjct: 193 HNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMI 252

Query: 230 SGLVQNQLYEE-GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           S   +++ Y E GL LF+ M  G + PN  T  S +  C     +  G+Q+ G  +K+  
Sbjct: 253 SACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGC 312

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ------------- 335
            ++L ++++ M +Y + G  E+A ++FE  E+   ++   ++ GFAQ             
Sbjct: 313 ATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARS 372

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
            GF+  A+++F  +V++ ++ D    S++L V     +L  G+QIH+  IK+ F S+  V
Sbjct: 373 RGFQ--ALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVV 430

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           N+ L+NMY+KCG +E + K F  M  R  V+W SMI+ +++HG    A++L+E+M L G 
Sbjct: 431 NSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGA 490

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P ++TF+SLL ACS+ GLV + M +   M   + I P  +HY C++DM  R G L +A 
Sbjct: 491 KPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAY 550

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           +FI+R   +P+  +W +L+  C  HG+ E+  YAA++L   +P     Y+L+ N+Y  +G
Sbjct: 551 AFIKRKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTG 610

Query: 576 RWKE--RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           RW++  R + + + +++G+ ++   SWI I  +V+ F  DD+ HPQ+  ++ +L  LL  
Sbjct: 611 RWRDVARVRKLSKHEDLGILRDR--SWITIRDKVYFFKADDRSHPQSTELYQLLETLLEK 668

Query: 634 MIDEGYVP 641
               GY P
Sbjct: 669 AKAIGYEP 676



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 110/215 (51%), Gaps = 1/215 (0%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
            S  Y+  +  C    +L   + +HG + K     D+ + ++L+++Y +CG+ +DA  +F
Sbjct: 77  QSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLF 136

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E + V+ T ++ G+  N     A+++FV+M+K G       +  +L       ++ 
Sbjct: 137 DEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNID 196

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           LGKQ+H   IK    S   + N L  +Y+K G+LE  I+ F R+  +N ++W +MI+A A
Sbjct: 197 LGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACA 256

Query: 436 RHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHAC 469
              N  +  L L+ +M    V P + T  S++  C
Sbjct: 257 EDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLC 291



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 27  KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86
           KI +D   S  K  L  +   S +LS+ +       G  +HA  IKT             
Sbjct: 379 KIFRDLVRSAMKPDLFTF---SSILSVCSTMMALEQGEQIHAQTIKT----------GFL 425

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           +  V+ ++L++ Y KC  +  A K F +MP R  V+W +M+SG+ ++G        F+  
Sbjct: 426 SDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFE-D 484

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           + L   + ++ +F  +LSAC  + L
Sbjct: 485 MILAGAKPNEITFVSLLSACSYAGL 509


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 339/618 (54%), Gaps = 28/618 (4%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           +V D ++ ++ L++   K      G  LH   I T    D      +P    +  +LL  
Sbjct: 26  IVADKFI-VTSLVAACTKLQALEEGRRLHEHLIITGFRTD------IP----LETALLQM 74

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  + +A ++F+ M ++D  +W+++++ + R G  +M    ++R +  G  + +  +
Sbjct: 75  YAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGV-EPNVVT 133

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F   L  C         + IH  +      ++  + ++L+  Y KC      RKVF  M+
Sbjct: 134 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 193

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGR 277
            RNV ++TA+IS  VQ   + E L+LF +M  +  I PN+ T+ + + A  GL  L +GR
Sbjct: 194 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 253

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           ++H  L      +++ +++AL+ MY KCGS  +A ++F+     + +S T ++  +AQ+G
Sbjct: 254 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 313

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
             +EA+ LF +M     +++P+ VS  + L    +  +L  G++IH  +++++  S P +
Sbjct: 314 NPQEALNLFKRM-----DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLAS-PQM 367

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
              L++MY++CG L+D+ +VF+RM  R++ S N+MIAAF +HG   +AL +Y +M+ EG+
Sbjct: 368 ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGI 427

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
               +TF+S+L ACSH  LV    +FL+S+   H + P  EHY C+VD++GR+G L +A 
Sbjct: 428 PADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAE 487

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             +E MP + D + W  LL  C  HGD + G+ AA K+F   P    PY+ ++N+Y+ + 
Sbjct: 488 ELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAK 547

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA-------DTIHGVLA 628
           R+ +  +  K M+E GV +   +S+IEI+ ++H F    +   Q        + +  +L 
Sbjct: 548 RFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLV 607

Query: 629 ELLRLMIDEGYVPNKRFI 646
           ELL  M   GYVP+ R +
Sbjct: 608 ELLEPMKQAGYVPDTREV 625



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 180/326 (55%), Gaps = 19/326 (5%)

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I+  V+     + L+L+ +M    I  +     S V AC+ LQAL EGR++H  L    
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            ++D+ +E+AL+ MY+KCGS++DA ++FE  E  D  + + I+  +A+ G  E A+ L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           +M+  G+E  PN+V+    + G  +  GL  G+ IH  I+ S    +  + + L+NMY K
Sbjct: 121 RMIAEGVE--PNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLK 178

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLS 464
           C ++ ++ KVF  M  RN  S+ +MI+A+ + G   +ALEL+  M K+E +EP   TF +
Sbjct: 179 CDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFAT 238

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACVVD-----MVGRAGLLIEARSFI 518
           +L A   +G + KG        +VHR ++ R      VV      M G+ G  +EAR   
Sbjct: 239 ILGAVEGLGNLEKG-------RKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVF 291

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           + M  + +V+ W +++ A + HG+ +
Sbjct: 292 DSMTAR-NVISWTSMIAAYAQHGNPQ 316


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 312/560 (55%), Gaps = 17/560 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           +V +N ++S +     +  A   FD  P +D VSWN M++ ++RNG  +   G F    E
Sbjct: 131 SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE 190

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 D  S+  ++S     +   +S+       + G   +V   N +++ Y + G   
Sbjct: 191 W-----DVISWNALMSGY--VQWGKMSEARELFDRMPG--RDVVSWNIMVSGYARRGDMV 241

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F    VR+V TWTAV+SG  QN + EE  ++F  M       N++++ + V A  
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMVAAYI 297

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             + + E ++    L+ +    ++   + ++  Y++ G +E+A  +F+   + D VS   
Sbjct: 298 QRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L  ++Q G  EE +QLF++M + G  ++ +  + VL       +L  G Q+H  +I++ 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +    FV N L+ MY KCG++ED+   F  M  R+ VSWN+MIA +ARHG G +ALE+++
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFD 473

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+    +P D+T + +L ACSH GLV KG+ +  SM     ++ + EHY C++D++GRA
Sbjct: 474 MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRA 533

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   ++ MP +PD  +W ALLGA  IH + E+G+ AAEK+F  +P++   Y+L++
Sbjct: 534 GRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLS 593

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ SG+W++  K    M+E GV K  G SWIE++ +VH+F   D +HP+ + I+  L 
Sbjct: 594 NIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLE 653

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M   GYV     +LH
Sbjct: 654 DLDMRMKKAGYVSATDMVLH 673


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/603 (33%), Positives = 323/603 (53%), Gaps = 14/603 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +L I        LG  +HA  +          +    + T +  +LL+ Y K  ++ +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIV----------IRGFTSHTFVSTALLNMYAKLQEIED 224

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           + K+F+ M   + VSWN M++GF  N  +   F  F R +  G    D  +F  +  A  
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTP-DAQTFIGVAKAIG 283

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE--MRVRNVITW 225
                  +K +       G +    VG ALI    KCGS    R +F    +  R    W
Sbjct: 284 MLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPW 343

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            A+ISG +++   E+ L+LF KM    I  +  TY S   A + L+ L  G+++H    K
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 286 LALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             L+ + + I +A+ + Y+KCGS+ED  ++F   E+ D +S T ++  ++Q    ++A++
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F  M   GI  +    S+VL        L  G+Q+H +I K     +  + + L++MY+
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG L D+ KVF+R++  ++VSW ++IA  A+HG    AL+L+  M   GVEP  VTFL 
Sbjct: 524 KCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLC 583

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSH GLV +G+++ K M + + + P  EHYAC+VD++ R G L +A  FI RMPV+
Sbjct: 584 VLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE 643

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P+ +VWQ LLGAC +HG+ E+G+ AA+K+   + ++ A Y+L++N Y  SG +K+     
Sbjct: 644 PNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLR 703

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
             MKE GV KE G SWI +   +H F   D+ HP+ D I+  L EL   +I    VP+  
Sbjct: 704 HLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDVPDLS 763

Query: 645 FIL 647
           + L
Sbjct: 764 YEL 766



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 268/530 (50%), Gaps = 18/530 (3%)

Query: 18  SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TF 74
           S++  PF T  I+ P S       D+++ I  L+ +        L   + A F+K   T 
Sbjct: 40  SAIQKPFATSGIKTPNSVKVDKT-DSHLQIQPLVDL--------LRDCVDARFLKQAKTV 90

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
             F  ++ ++  ++ V+ N +   Y KC  +  A +LFD M  R+T SW  +++G   NG
Sbjct: 91  HGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENG 150

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
            F  GF FF      G +  DQ +++ IL  C   +   +  M+H  + + G+     V 
Sbjct: 151 LFLDGFEFFCEMQSQGIFP-DQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS 209

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
            AL+  Y K        KVF  M   NV++W A+I+G   N LY +   LF++M    + 
Sbjct: 210 TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVT 269

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P++ T++    A   L+ + + +++ G   +L + S+  + +AL+DM SKCGS+++A  I
Sbjct: 270 PDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSI 329

Query: 315 F--EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           F   F           ++ G+ ++GF E+A++LF KM +  I +D     +V        
Sbjct: 330 FNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALK 389

Query: 373 SLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            L LGK++H+  IKS    N   ++N + N Y+KCG LED  KVF+RM  R+ +SW S++
Sbjct: 390 CLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLV 449

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
            A+++     KA+E++  M+ EG+ P   TF S+L +C+++ L+  G +    + +V   
Sbjct: 450 TAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLD 509

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             +    A +VDM  + G L +A+    R+    D + W A++   + HG
Sbjct: 510 MDKCIESA-LVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHG 557


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 177/454 (38%), Positives = 276/454 (60%), Gaps = 5/454 (1%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N LI  Y K G     + VF +M  RNV++WT +IS     +L ++ L+  V M    + 
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN  TY S + AC GL  L   RQ+H  + K+ L SD+ + SAL+D+YS+ G +E+A ++
Sbjct: 64  PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+     D V  + I+ GFAQN   +EA++LF +M +AG       +++VL        L
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LG+Q+H  ++K D   +  +NN L++MY KCG LED+  VF RM  ++ +SW++MIA  
Sbjct: 181 ELGRQVHVHVLKYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A++G   +AL+L+E MK+ G++P  VT + +L ACSH GLV +G+ +  SM E+  I P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            EHY C++D++GRAG L EA   I  M  +PD + W+ALL AC +H + ++  +AA+++ 
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P     Y+L++NIY+ + RW + A+  + M   G+ KE G SWIE+ KQ+H+F++ D
Sbjct: 359 RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGD 418

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HPQ   I+  L +L+  ++  GYVP+  F+L 
Sbjct: 419 RSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQ 452



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/402 (29%), Positives = 211/402 (52%), Gaps = 21/402 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+K   + +A  +FD MP R+ VSW TM+S +      D    F    L  G  
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV- 62

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +++ +L ACD    +L  + +HC +   G + +V V +ALI  Y + G   +  +
Sbjct: 63  RPNMFTYSSVLRACD-GLFNL--RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM   +++ W+++I+G  QN   +E L+LF +M          T  S + AC+GL  
Sbjct: 120 VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQ+H  +  L    DL + +AL+DMY KCGS+EDA  +F    E D +S + ++ G
Sbjct: 180 LELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSD 388
            AQNG+ +EA++LF  M   GI+  PN V+ ++GV    +  GL ++     HS+  K  
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIK--PNYVT-IVGVLFACSHAGLVEEGLYYFHSM--KEL 292

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALE 445
           F  +P   +   +I++  + G L +++ + + M    ++V+W +++ A   H N    + 
Sbjct: 293 FGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRN--VDVA 350

Query: 446 LYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMT 486
           ++   ++  ++P D  T++ L +  ++    N   E  ++MT
Sbjct: 351 IHAAKQILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMT 392



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 26/192 (13%)

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+ N LINMY K G L D+  VF +M  RN VSW +MI+A++      KALE    M  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHY--ACVVDMVGR 507
           GV P   T+ S+L AC   GL N        + ++H    +I   ++ +  + ++D+  R
Sbjct: 61  GVRPNMFTYSSVLRACD--GLFN--------LRQLHCCIIKIGLDSDVFVRSALIDVYSR 110

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE----MGKYAAEKLFLAQPDSPAP 563
            G L  A    + M V  D++VW +++   + + D +    + K      FLAQ  +   
Sbjct: 111 WGELENALRVFDEM-VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTT--- 166

Query: 564 YILMANIYSCSG 575
             L + + +C+G
Sbjct: 167 --LTSVLRACTG 176



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 19/176 (10%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG  +H   +K    +D   + N        N+LL  Y KC  + +A  +F  M  +D
Sbjct: 180 LELGRQVHVHVLK----YDQDLILN--------NALLDMYCKCGSLEDANAVFVRMVEKD 227

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI- 178
            +SW+TM++G  +NG        F+    LG  + +  +   +L AC  S   LV + + 
Sbjct: 228 VISWSTMIAGLAQNGYSKEALKLFESMKVLGI-KPNYVTIVGVLFAC--SHAGLVEEGLY 284

Query: 179 --HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISG 231
             H +  L G +        +I    + G  S    +  EM    + +TW A+++ 
Sbjct: 285 YFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/471 (37%), Positives = 281/471 (59%), Gaps = 1/471 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L  C ++  S+  +  H  +   G E ++   N LI  Y KC    S RK F EM V++
Sbjct: 49  LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  VI  L QN    E LKL ++M       N  T  S +  C+   A+ E  Q+H 
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHA 168

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K A+ S+  + +AL+ +Y+KC S++DA Q+FE   E + V+ + ++ G+ QNGF EE
Sbjct: 169 FSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEE 228

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ +F      G + DP M+S+ +       +L  GKQ+H++  KS F SN +V++ LI+
Sbjct: 229 ALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLID 288

Query: 402 MYSKCGDLEDSIKVFSR-MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           MY+KCG + ++  VF   +  R+ V WN+MI+ FARH    +A+ L+E+M+  G  P DV
Sbjct: 289 MYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDV 348

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T++ +L+ACSH+GL  +G ++   M   H +SP   HY+C++D++GRAGL+ +A   IER
Sbjct: 349 TYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIER 408

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W +LL +C I+G+ E  + AA+ LF  +P++   +IL+ANIY+ + +W E 
Sbjct: 409 MPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEV 468

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           A+A K ++E  V KE G SWIEI+ ++HSF V ++ HPQ D I+  L  L+
Sbjct: 469 ARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLV 519



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 206/425 (48%), Gaps = 30/425 (7%)

Query: 28  IIQDPTSSTSKLVLDNYVDISR------LLSISAKEGHFHLGPSLHASFIKTFEPFDNQN 81
           +I +    +SK+  +N V I R      LL + AK      G + HA  I+     D   
Sbjct: 23  VISEAKPESSKV--ENVVHIDRVSNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMD--- 77

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
                   +  N L++ Y KC  + +A K F++MP++  VSWNT++    +N E      
Sbjct: 78  -------ILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALK 130

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
              +    G    ++ + + +L  C      L    +H        +    VG AL+  Y
Sbjct: 131 LLIQMQREG-TPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVY 189

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KC S     ++F  M  +N +TW+++++G VQN  +EE L +F    L   + +     
Sbjct: 190 AKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMIS 249

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S+V AC+GL  L EG+Q+H I  K    S++ + S+L+DMY+KCG + +A+ +F+   E+
Sbjct: 250 SAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEV 309

Query: 322 DGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---G 377
             + +   ++ GFA++    EAM LF KM + G    P+ V+ V  V    + +GL   G
Sbjct: 310 RSIVLWNAMISGFARHARAPEAMILFEKMQQRGFF--PDDVTYVC-VLNACSHMGLHEEG 366

Query: 378 KQIHSLIIKSDFTSNPFVN-NGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAF 434
           ++   L+++    S   ++ + +I++  + G +  +  +  RM P N+ S  W S++A+ 
Sbjct: 367 QKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERM-PFNATSSMWGSLLASC 425

Query: 435 ARHGN 439
             +GN
Sbjct: 426 KIYGN 430


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/568 (31%), Positives = 311/568 (54%), Gaps = 11/568 (1%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G +LH   +KT           + N+  + ++LL  Y+K  ++  + K+FD+MP R+ V+
Sbjct: 135 GTNLHGFSVKT----------GLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVT 184

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  +++G +R G  + G  +F   +     + D  ++ I L A   S      + IH   
Sbjct: 185 WTAVITGLVRAGYSEAGLAYFS-GMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQT 243

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++E   V N+L T Y KCG    G   F +MR  +V++WT +++  +Q    + GL
Sbjct: 244 LKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + F +M    + PN  T+ + +  C+    L  G Q+H  +  +   + L + +++M +Y
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLY 363

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           SKCG +    ++F   +  D ++ + I+  ++Q G+ EEA +   +M   G + +   ++
Sbjct: 364 SKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           +VL V G    L  GKQ+H+ ++         V + LI MY+KCG + ++ K+F      
Sbjct: 424 SVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKD 483

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + +SW +MI+ +A HG+  +A+EL+E ++  G+ P  VTF+ +L ACSH G+V+ G  + 
Sbjct: 484 DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYF 543

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            SM++ + I+P  EHY C++D++ RAG L +A + I  MP++ D +VW  LL AC IHGD
Sbjct: 544 NSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGD 603

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            + G+ AA ++    P+    +I +ANI++  G+WKE A     MK  GV KE G S ++
Sbjct: 604 VDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVK 663

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           ++  V +FV  D+ HPQ + I+ +L EL
Sbjct: 664 VKDSVFAFVSGDRSHPQGEDIYNILEEL 691



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 219/456 (48%), Gaps = 10/456 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+ L   +K + +++A  LFD +P RD VSW  ++SG++ + +       F +       
Sbjct: 53  NNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSEL 112

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D    ++ L  C      L    +H      G    V VG+AL+  Y K G      K
Sbjct: 113 RIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCK 172

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  RN +TWTAVI+GLV+    E GL  F  M    +  +S  Y  ++ A +   A
Sbjct: 173 VFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGA 232

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR IH    K     +  + ++L  MY+KCG ++     F     LD VS T I+  
Sbjct: 233 LNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTA 292

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + Q G E+  +Q F +M  + +  +    SAV+        L  G+Q+H+ ++   F + 
Sbjct: 293 YIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA 352

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ +YSKCG+L    KVF  M  R+ ++W+++IAA+++ G G +A E    M+ 
Sbjct: 353 LSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS 412

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRA 508
           EG +P +    S+L  C  + ++ +G +        H +S   E  + V    + M  + 
Sbjct: 413 EGPKPNEFALASVLSVCGSMAILEQGKQL-----HAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + EA S I     K D++ W A++   + HG S+
Sbjct: 468 GSIAEA-SKIFMDSWKDDIISWTAMISGYAEHGHSQ 502



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 144/332 (43%), Gaps = 14/332 (4%)

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQS------DLCIESALMDMYSKCGSVEDAWQIFE 316
           +V+A +G +     R ++     L L +      DL   +  + +  K   ++DA  +F+
Sbjct: 14  TVLAVAGAKTNDNPRHLYTKPLSLTLNAHFSNKVDLAEANNQLKILVKTNHLKDARDLFD 73

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLG 375
              + D VS T I+ G+  +    EA++LF KM +++ + IDP ++S  L   G+  +  
Sbjct: 74  QLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYL 133

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G  +H   +K+   ++ FV + L++MY K G++  S KVF  M  RN+V+W ++I    
Sbjct: 134 YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLV 193

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           R G     L  +  M    VE     +   L A +  G +N G   + + T        +
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRS-IHTQTLKKGFDENS 252

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                +  M  + G L        +M    DV+ W  ++ A    G  + G  A +++  
Sbjct: 253 FVANSLTTMYNKCGKLDYGLHTFRKMRT-LDVVSWTTIVTAYIQMGKEDCGLQAFKRM-R 310

Query: 556 AQPDSPAPYILMANIYSCSG----RWKERAKA 583
           A    P  Y   A I  C+     +W E+  A
Sbjct: 311 ASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 312/560 (55%), Gaps = 17/560 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           +V +N ++S +     +  A   FD  P +D VSWN M++ ++RNG  +   G F    E
Sbjct: 131 SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE 190

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 D  S+  ++S     +   +S+       + G   +V   N +++ Y + G   
Sbjct: 191 W-----DVISWNALMSGY--VQWGKMSEARELFDRMPG--RDVVSWNIMVSGYARRGDMV 241

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F    VR+V TWTAV+SG  QN + EE  ++F  M       N++++ + V A  
Sbjct: 242 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMVAAYI 297

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             + + E ++    L+ +    ++   + ++  Y++ G +E+A  +F+   + D VS   
Sbjct: 298 QRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 353

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L  ++Q G  EE +QLF++M + G  ++ +  + VL       +L  G Q+H  +I++ 
Sbjct: 354 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 413

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +    FV N L+ MY KCG++ED+   F  M  R+ VSWN+MIA +ARHG G +ALE+++
Sbjct: 414 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFD 473

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+    +P D+T + +L ACSH GLV KG+ +  SM     ++ + EHY C++D++GRA
Sbjct: 474 MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRA 533

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   ++ MP +PD  +W ALLGA  IH + E+G+ AAEK+F  +P++   Y+L++
Sbjct: 534 GRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLS 593

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ SG+W++  K    M+E GV K  G SWIE++ +VH+F   D +HP+ + I+  L 
Sbjct: 594 NIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLE 653

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M   GYV     +LH
Sbjct: 654 DLDMRMKKAGYVSATDMVLH 673


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 315/561 (56%), Gaps = 19/561 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           +V +N ++S +     +  A   FD  P +D VSWN M++ ++RNG        F    E
Sbjct: 200 SVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTE 259

Query: 149 LGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                 D  S+  +++    RS++    KM + +      + +V   N +++ Y + G  
Sbjct: 260 W-----DAISWNALMAGYVQRSQIEEAQKMFNKMP-----QRDVVSWNTMVSGYARRGDM 309

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  R++F    +R+V TWTA++SG  QN + EE  ++F  M     + N++++ + + A 
Sbjct: 310 AEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM----PDKNAVSWNAMMAAY 365

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
              + + E ++    L+      ++   + ++  Y++ G +++A  IF    + D VS  
Sbjct: 366 VQRRMMEEAKE----LFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWA 421

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +L  ++Q GF EE +QLF +M + G  ++ +  + VL       +L  G Q+HS +IK+
Sbjct: 422 AMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKA 481

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +    FV N L+ MY KCG +E++   F  M  R+ VSWN+MIA +ARHG G +ALE++
Sbjct: 482 GYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVF 541

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           + M+    +P D+T + +L ACSH GLV KG+ +  SM     ++ + EHY C++D++GR
Sbjct: 542 DTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGR 601

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA + ++ MP +PD  +W ALLGA  IH +SE+G+ AAEK+F  +P++   Y+L+
Sbjct: 602 AGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLL 661

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+ SG+W++  K    M E GV K  G SWIE++ +VH+F V D +HP+ + I+  L
Sbjct: 662 SNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFL 721

Query: 628 AELLRLMIDEGYVPNKRFILH 648
            +L   M   GYV     +LH
Sbjct: 722 EDLDIRMKKAGYVSATDMVLH 742



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 122/530 (23%), Positives = 219/530 (41%), Gaps = 109/530 (20%)

Query: 86  PNATVIW-NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           P+  VI  N  ++ +++  ++ +A +LF  MP R T ++NTM++G+  NG       FF+
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 145 RSLELGFYQLDQASFTIILSACDRS---------------------ELSLVSKMIHCLVY 183
                   + D  S+  +L A   S                      + + S   H LV 
Sbjct: 163 -----SIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVS 217

Query: 184 LCGY------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           L  +      E++    N ++ +Y + G     R++F      + I+W A+++G VQ   
Sbjct: 218 LARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQ 277

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            EE  K+F KM                                        Q D+   + 
Sbjct: 278 IEEAQKMFNKM---------------------------------------PQRDVVSWNT 298

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++  Y++ G + +A ++F+ A   D  + T I+ G+AQNG  EEA ++F  M       D
Sbjct: 299 MVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP------D 352

Query: 358 PNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN----NGLINMYSKCGDLED 411
            N VS  A++  +     +   K++        F + P  N    N ++  Y++ G L++
Sbjct: 353 KNAVSWNAMMAAYVQRRMMEEAKEL--------FDAMPCRNVASWNTMLTGYAQAGMLDE 404

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  M  +++VSW +M+AA+++ G   + L+L++EM   G       F  +L  C+ 
Sbjct: 405 ARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCAD 464

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVD-----MVGRAGLLIEARSFIERMPVKPD 526
           +  +  GM+    + +            C V      M  + G + EA S  E M  + D
Sbjct: 465 IAALECGMQLHSRLIKA------GYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER-D 517

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YILMANIYSCS 574
           V+ W  ++   + HG    GK A E     +  S  P    L+  + +CS
Sbjct: 518 VVSWNTMIAGYARHG---FGKEALEVFDTMRKTSTKPDDITLVGVLAACS 564


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 205/603 (33%), Positives = 323/603 (53%), Gaps = 14/603 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +L I        LG  +HA  +          +    + T +  +LL+ Y K  ++ +
Sbjct: 175 SGILQICIGLDSIELGNMVHAQIV----------IRGFTSHTFVSTALLNMYAKLQEIED 224

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           + K+F+ M   + VSWN M++GF  N  +   F  F R +  G    D  +F  +  A  
Sbjct: 225 SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTP-DAQTFIGVAKAIG 283

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE--MRVRNVITW 225
                  +K +       G +    VG ALI    KCGS    R +F    +  R    W
Sbjct: 284 MLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPW 343

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            A+ISG +++   E+ L+LF KM    I  +  TY S   A + L+ L  G+++H    K
Sbjct: 344 NAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 286 LALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             L+ + + I +A+ + Y+KCGS+ED  ++F   E+ D +S T ++  ++Q    ++A++
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           +F  M   GI  +    S+VL        L  G+Q+H +I K     +  + + L++MY+
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYA 523

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG L D+ KVF+R++  ++VSW ++IA  A+HG    AL+L+  M   GVEP  VTFL 
Sbjct: 524 KCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLC 583

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSH GLV +G+++ K M + + + P  EHYAC+VD++ R G L +A  FI RMPV+
Sbjct: 584 VLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE 643

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P+ +VWQ LLGAC +HG+ E+G+ AA+K+   + ++ A Y+L++N Y  SG +K+     
Sbjct: 644 PNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLR 703

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
             MKE GV KE G SWI +   +H F   D+ HP+ D I+  L EL   +I    VP+  
Sbjct: 704 HVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDVPDLS 763

Query: 645 FIL 647
           + L
Sbjct: 764 YEL 766



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 156/530 (29%), Positives = 268/530 (50%), Gaps = 18/530 (3%)

Query: 18  SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TF 74
           S++  PF T  I+ P S       D+++ I  L+ +        L   + A F+K   T 
Sbjct: 40  SAIQKPFATSGIKTPNSVKVDKT-DSHLQIQPLVDL--------LRDCVDARFLKQAKTV 90

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
             F  ++ ++  ++ V+ N +   Y KC  +  A +LFD M  R+T SW  +++G   NG
Sbjct: 91  HGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENG 150

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
            F  GF FF      G +  DQ +++ IL  C   +   +  M+H  + + G+     V 
Sbjct: 151 LFLDGFEFFCEMQSQGIFP-DQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS 209

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
            AL+  Y K        KVF  M   NV++W A+I+G   N LY +   LF++M    + 
Sbjct: 210 TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVT 269

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P++ T++    A   L+ + + +++ G   +L + S+  + +AL+DM SKCGS+++A  I
Sbjct: 270 PDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSI 329

Query: 315 F--EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           F   F           ++ G+ ++GF E+A++LF KM +  I +D     +V        
Sbjct: 330 FNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALK 389

Query: 373 SLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            L LGK++H+  IKS    N   ++N + N Y+KCG LED  KVF+RM  R+ +SW S++
Sbjct: 390 CLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLV 449

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
            A+++     KA+E++  M+ EG+ P   TF S+L +C+++ L+  G +    + +V   
Sbjct: 450 TAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLD 509

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             +    A +VDM  + G L +A+    R+    D + W A++   + HG
Sbjct: 510 MDKCIESA-LVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHG 557


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 201/601 (33%), Positives = 305/601 (50%), Gaps = 12/601 (1%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL  +       LG  +HA  +KT +          P    + N L++ Y K D   +A 
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDS---------PPPPFLANYLINMYSKLDHPESAR 62

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +    P R+ VSW +++SG  +NG F      F      G    D  +F     A    
Sbjct: 63  LVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPND-FTFPCAFKAVASL 121

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            L +  K IH L   CG   +V VG +    Y K       RK+F E+  RN+ TW A I
Sbjct: 122 RLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFI 181

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           S  V +    E ++ F++      +PNS+T+ + + ACS    L  G Q+HG++ +    
Sbjct: 182 SNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFD 241

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           +D+ + + L+D Y KC  +  +  IF      + VS   ++  + QN  +E+A  L+++ 
Sbjct: 242 TDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS 301

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            K  +E    M+S+VL        L LG+ IH+  +K+      FV + L++MY KCG +
Sbjct: 302 RKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCI 361

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLLH 467
           EDS + F  M  +N V+ NS+I  +A  G    AL L+EEM   G  PT   +TF+SLL 
Sbjct: 362 EDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLS 421

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           ACS  G V  GM+   SM   + I P AEHY+C+VDM+GRAG++  A  FI++MP++P +
Sbjct: 422 ACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTI 481

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            VW AL  AC +HG  ++G  AAE LF   P     ++L++N ++ +GRW E     + +
Sbjct: 482 SVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEL 541

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           K +G+ K  G SWI ++ QVH+F   D+ H     I   LA+L   M   GY P+ +  L
Sbjct: 542 KGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSL 601

Query: 648 H 648
           +
Sbjct: 602 Y 602


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 322/634 (50%), Gaps = 46/634 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+   K G        HA   + F+   + N++        +N+LLS       + 
Sbjct: 44  LNHLLTAYGKAGR-------HARARRVFDATPHPNLFT-------YNALLSTLAHARLLD 89

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSA 165
           +   LF  M  RDTVS+N +++GF   G        +   L  G   +  + + + ++ A
Sbjct: 90  DMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMA 149

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--- 222
                   + +  HC +   G+     VG+ L+  Y K G     ++VF EM  +NV   
Sbjct: 150 ASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMY 209

Query: 223 ----------------------------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
                                       ITWT +++G  QN L  + L  F +M    I 
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIA 269

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            +  T+ S + AC  L AL +G+QIH  + +     ++ + SAL+DMYSKC S++ A   
Sbjct: 270 IDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETA 329

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      + +S T ++VG+ QNG  EEA+++F +M + GI+ D   + +V+       SL
Sbjct: 330 FRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASL 389

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G Q H L + S       V+N L+ +Y KCG +ED+ ++F  M   + VSW +++  +
Sbjct: 390 EEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGY 449

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G   + ++L+E+M  + V+P  VTF+ +L ACS  G V KG  +  SM + H I P 
Sbjct: 450 AQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPI 509

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HY C++D+  R+G L EA  FI++MP+ PD + W  LL AC + GD E+G++AAE L 
Sbjct: 510 DDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLL 569

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P +PA Y+L+ ++++  G W + A+  + M++  V KE G SWI+ + +VH F  DD
Sbjct: 570 EIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 629

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP +  I+  L  L   M++EGY P+   +LH
Sbjct: 630 QSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLH 663


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 289/493 (58%), Gaps = 1/493 (0%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +Q +F+ ILSA   + + L  + +H L++  G++  + VG AL+  Y KC    S  +VF
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVF 68

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQAL 273
            +M  RN+++W ++I G   N LY+  + +F   +    + PN ++  S + AC+ +  L
Sbjct: 69  DQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGL 128

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GRQ+HG++ K  L     + ++LMDMY KC   ++  ++F+   + D V+  V+++GF
Sbjct: 129 NFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 188

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QN   EEA   F  M + GI  D    S VL       +L  G  IH  IIK  +  N 
Sbjct: 189 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNM 248

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            +   LI MY+KCG L D+ +VF  +   N +SW +MI+A+  HG   + +EL+E M  E
Sbjct: 249 CILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSE 308

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+EP+ VTF+ +L ACSH G V +G+    SM ++H ++P  EHYAC+VD++GRAG L E
Sbjct: 309 GIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDE 368

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A+ FIE MP+KP   VW ALLGAC  +G+ +MG+ AAE+LF  +P +P  Y+L+AN+ + 
Sbjct: 369 AKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTR 428

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           SGR +E  +  + M   GV KE G SWI+++     F   D+ H  +D I+ +L +L +L
Sbjct: 429 SGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKL 488

Query: 634 MIDEGYVPNKRFI 646
           +  +GYV    F+
Sbjct: 489 VKKKGYVAETEFV 501



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 220/482 (45%), Gaps = 45/482 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    S +LS SA       G  LH+   K    FD  N++       +  +L+  Y KC
Sbjct: 9   NQFTFSSILSASAATMMVLHGQQLHSLIHK--HGFD-ANIF-------VGTALVDMYAKC 58

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             M +AV++FD MP R+ VSWN+M+ GF  N  +D   G FK  L       ++ S + +
Sbjct: 59  ADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSV 118

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LSAC         + +H +V   G      V N+L+  YFKC     G K+F  +  R+V
Sbjct: 119 LSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDV 178

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +TW  ++ G VQN  +EE    F  M    I P+  ++ + + + + L AL +G  IH  
Sbjct: 179 VTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQ 238

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + KL    ++CI  +L+ MY+KCGS+ DA+Q+FE  E+ + +S T ++  +  +G   + 
Sbjct: 239 IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQV 298

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++LF  M+  GIE  P+ V+ V                    + S  +    V  GL + 
Sbjct: 299 IELFEHMLSEGIE--PSHVTFV-------------------CVLSACSHTGRVEEGLAHF 337

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
                   +S+K    M P     +  M+    R G   +A    E M +   +PT   +
Sbjct: 338 --------NSMKKIHDMNP-GPEHYACMVDLLGRAGWLDEAKRFIESMPM---KPTPSVW 385

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
            +LL AC   G +  G E  + + E+   +P   +Y  + +M  R+G L EA      M 
Sbjct: 386 GALLGACRKYGNLKMGREAAERLFEMEPYNP--GNYVLLANMCTRSGRLEEANEVRRLMG 443

Query: 523 VK 524
           V 
Sbjct: 444 VN 445



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 171/340 (50%), Gaps = 8/340 (2%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN  T+ S + A +    +  G+Q+H ++ K    +++ + +AL+DMY+KC  +  A ++
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDT 372
           F+   E + VS   ++VGF  N   + A+ +F  +++    I PN   VS+VL       
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVI-PNEVSVSSVLSACANMG 126

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  G+Q+H +++K       +V N L++MY KC   ++ +K+F  +  R+ V+WN ++ 
Sbjct: 127 GLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVM 186

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            F ++    +A   +  M+ EG+ P + +F ++LH+ + +  +++G      + ++  + 
Sbjct: 187 GFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK 246

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
                   ++ M  + G L++A    E +    +V+ W A++ A  +HG +       E 
Sbjct: 247 NMCI-LGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCANQVIELFEH 304

Query: 553 LFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEM 590
           + L++   P+    +  + +CS  GR +E       MK++
Sbjct: 305 M-LSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKI 343



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L +    S +L  SA     H G ++H   IK         +  V N  ++  SL++ Y
Sbjct: 209 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIK---------LGYVKNMCIL-GSLITMY 258

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +A ++F+ +   + +SW  M+S +  +G  +     F+  L  G  +    +F
Sbjct: 259 AKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGI-EPSHVTF 317

Query: 160 TIILSACDRS 169
             +LSAC  +
Sbjct: 318 VCVLSACSHT 327


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 202/619 (32%), Positives = 332/619 (53%), Gaps = 48/619 (7%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           LHA FI+T      Q++ +   + VI     S Y     +  A+ LF  +     ++W +
Sbjct: 27  LHAQFIRT------QSLSHTSASIVI-----SIYTNLKLLHEALLLFKTLKSPPVLAWKS 75

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           ++  F     F      F      G    D   F  +L +C         + +H  +   
Sbjct: 76  VIRCFTDQSLFSKALASFVEMRASGRCP-DHNVFPSVLKSCTMMMDLRFGESVHGFIVRL 134

Query: 186 GYEEEVTVGNALITSYFKC------------------GSSSSG----------------- 210
           G + ++  GNAL+  Y K                    +S+SG                 
Sbjct: 135 GMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDS 194

Query: 211 -RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+VF  M  ++V+++  +I+G  Q+ +YE+ L++  +M    + P+S T  S +   S 
Sbjct: 195 VRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSE 254

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              + +G++IHG + +  + SD+ I S+L+DMY+K   +ED+ ++F      DG+S   +
Sbjct: 255 YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSL 314

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNG   EA++LF +MV A ++      S+V+       +L LGKQ+H  +++  F
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN F+ + L++MYSKCG+++ + K+F RM   + VSW ++I   A HG+G +A+ L+EE
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK +GV+P  V F+++L ACSHVGLV++   +  SMT+V+ ++   EHYA V D++GRAG
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA +FI +M V+P   VW  LL +CS+H + E+ +  AEK+F    ++   Y+LM N
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCN 554

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+ +GRWKE AK   RM++ G+ K+   SWIE++ + H FV  D+ HP  D I+  L  
Sbjct: 555 MYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKA 614

Query: 630 LLRLMIDEGYVPNKRFILH 648
           ++  M  EGYV +   +LH
Sbjct: 615 VMEQMEKEGYVADTSGVLH 633


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/492 (35%), Positives = 289/492 (58%), Gaps = 2/492 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           + ++L+ C         + +H  +    Y   V +   LI  Y KC      R VF EMR
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV++WTA+ISG  Q     E L LFV+M      PN  T+ + + +C+G      GRQ
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  ++K   ++ + + S+L+DMY+K G + +A  +FE   E D VS T I+ G+AQ G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA++LF ++ + G+  +    +++L       +L  GKQ+HS +++ +      + N 
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNS 252

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEP 457
           LI+MYSKCG+L  + K+F+ M  R  +SWN+M+  +++HG G + ++L++ M+ E  V+P
Sbjct: 253 LIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKP 312

Query: 458 TDVTFLSLLHACSHVGLVNKGME-FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
             VTFL++L  CSH GL +KG+E F + M     I    EHY CV+D++GRAG + EA  
Sbjct: 313 DSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFE 372

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            I++MP +P   +W +LLGAC +H ++ +G++   +L   +P++   Y++++N+Y+ +GR
Sbjct: 373 LIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGR 432

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W++     + M E  V KE G SWIE+++ +H+F   D+ HP+ + +   + ELL    +
Sbjct: 433 WEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKE 492

Query: 637 EGYVPNKRFILH 648
            GYVP++  +L+
Sbjct: 493 SGYVPDQSCVLY 504



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 193/383 (50%), Gaps = 19/383 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IKT         Y  P    +   L+  Y KC+ +  A  +FD+M  R+ VS
Sbjct: 29  GQRVHAHMIKT--------CYLPP--VYLSTRLIILYTKCECLGCARHVFDEMRERNVVS 78

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  M+SG+ + G        F + L     + ++ +F  +LS+C       + + IH  +
Sbjct: 79  WTAMISGYSQRGFASEALHLFVQMLRSD-TEPNEFTFATVLSSCTGFSGFELGRQIHSHI 137

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
           +   YE  + VG++L+  Y K G     R VF  +  R+V++ TA+ISG  Q  L EE L
Sbjct: 138 FKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEAL 197

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LF ++    ++ N +TY S + A SGL AL  G+Q+H  + +  L   + ++++L+DMY
Sbjct: 198 ELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMY 257

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           SKCG++  A +IF        +S   +LVG++++G   E ++LF K+++   ++ P+ V+
Sbjct: 258 SKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLF-KLMREENKVKPDSVT 316

Query: 363 AVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNNG-LINMYSKCGDLEDSIKVFS 417
             L V    +  GL  +       ++   D       + G +I++  + G +E++ ++  
Sbjct: 317 -FLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIK 375

Query: 418 RMAPRNSVS-WNSMIAAFARHGN 439
           +M    + + W S++ A   H N
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHSN 398


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 312/560 (55%), Gaps = 17/560 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           +V +N ++S +     +  A   FD  P +D VSWN M++ ++RNG  +   G F    E
Sbjct: 6   SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE 65

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 D  S+  ++S     +   +S+       + G   +V   N +++ Y + G   
Sbjct: 66  W-----DVISWNALMSG--YVQWGKMSEARELFDRMPG--RDVVSWNIMVSGYARRGDMV 116

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F    VR+V TWTAV+SG  QN + EE  ++F  M       N++++ + V A  
Sbjct: 117 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMVAAYI 172

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
             + + E ++    L+ +    ++   + ++  Y++ G +E+A  +F+   + D VS   
Sbjct: 173 QRRMMDEAKE----LFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 228

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L  ++Q G  EE +QLF++M + G  ++ +  + VL       +L  G Q+H  +I++ 
Sbjct: 229 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAG 288

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           +    FV N L+ MY KCG++ED+   F  M  R+ VSWN+MIA +ARHG G +ALE+++
Sbjct: 289 YGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFD 348

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+    +P D+T + +L ACSH GLV KG+ +  SM     ++ + EHY C++D++GRA
Sbjct: 349 MMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRA 408

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   ++ MP +PD  +W ALLGA  IH + E+G+ AAEK+F  +P++   Y+L++
Sbjct: 409 GRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLS 468

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ SG+W++  K    M+E GV K  G SWIE++ +VH+F   D +HP+ + I+  L 
Sbjct: 469 NIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLE 528

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M   GYV     +LH
Sbjct: 529 DLDMRMKKAGYVSATDMVLH 548


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 200/627 (31%), Positives = 343/627 (54%), Gaps = 27/627 (4%)

Query: 33  TSSTSKLVLDNYVDI-SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           T +T  +  D YV + S L   S  E    +G  +H   ++T        + ++  A  +
Sbjct: 367 TRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRT-------GLTDLKIA--V 417

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSLE 148
            N L++ Y KC  + +A K+F  M   D +SWNT++S   +NG   E  M +   ++S  
Sbjct: 418 SNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSC- 476

Query: 149 LGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
                +  ++F +I  LS+C   +L    + +HC     G + + +V N L+  Y +CG+
Sbjct: 477 -----ISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGA 531

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVM 265
            S   KVF  M   + ++W  ++  +  +Q    E +K+F  M  G + PN +T+++ + 
Sbjct: 532 MSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLA 591

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGV 324
           A S L  L  G+Q+H  + K  +  D  +++AL+  Y+K G +     +F   ++  D +
Sbjct: 592 ALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAI 651

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G+  NG  +EAM     M+ +G  +D    S +L       +L  G ++H+  
Sbjct: 652 SWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFG 711

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I+S   S+  V + L++MYSKCG ++ + K+F+ M  RN  SWNSMI+ +ARHG G KA+
Sbjct: 712 IRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAI 771

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           E++EEM      P  VTF+S+L ACSH GLV +G+E+ + M + H I P+ EHY+CV+D+
Sbjct: 772 EIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDL 830

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS---EMGKYAAEKLFLAQPDSP 561
           +GRAG + + + +I+RMP++P+ L+W+ +L AC    D    ++G+ A+  L   +P +P
Sbjct: 831 LGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNP 890

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+L +N ++ +G W++ AKA   M++    KE G SW+ +   VH+F+  D+ HP   
Sbjct: 891 VNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTK 950

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFILH 648
            I+  L  L++ + + GYVP   + L+
Sbjct: 951 EIYEKLNFLIQNIRNAGYVPLTEYALY 977



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 231/469 (49%), Gaps = 20/469 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRN--AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           T + N+L+S Y  C       A ++FD  P+RD ++WN ++S + + G+    F  FK  
Sbjct: 202 TTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFK-D 260

Query: 147 LELG--FYQLDQASFT---IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
           ++ G    QL     T   +I +A   S  S V   +   V   G   ++ VG+AL++++
Sbjct: 261 MQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAF 320

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTY 260
            + G +   + +F  ++ +N +T   +I GLV+    EE +K+FV     + +N ++   
Sbjct: 321 ARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVV 380

Query: 261 LSSVMACSGL--QALCEGRQIHGILWKLALQS-DLCIESALMDMYSKCGSVEDAWQIFEF 317
           L S +A   +  + L  GR +HG + +  L    + + + L++MY+KCG++E A +IF+ 
Sbjct: 381 LLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQL 440

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN---MVSAVLGVFGVDTSL 374
            E  D +S   I+    QNG  EEA+  +  M ++ I   P+   ++S++    G+   L
Sbjct: 441 MEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCIS--PSNFALISSLSSCAGLKL-L 497

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G+Q+H   +K     +  V+N L+ MY +CG + D  KVF+ MA  + VSWN+M+   
Sbjct: 498 TAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVM 557

Query: 435 ARHGNGFKAL-ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           A        + +++  M   G+ P  VTF++LL A S + ++  G +   ++ + H +  
Sbjct: 558 ASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMK-HGVME 616

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
                  ++    ++G +         M  + D + W +++     +G+
Sbjct: 617 DNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGN 665



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 206/408 (50%), Gaps = 25/408 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y K  ++  A ++FD+MP R+ VSW  +VSG++ +G  +  F  F+  L     
Sbjct: 100 NHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQA 159

Query: 153 QLDQASFTI--ILSAC-----DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC- 204
                SFT   +L AC     DR   ++    +H LV    Y    TV NALI+ Y  C 
Sbjct: 160 GCRPTSFTFGTLLRACQDGGPDRLGFAV---QVHGLVSKTEYASNTTVCNALISMYGSCT 216

Query: 205 -GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG----LINPNSLT 259
            G     ++VF    +R++ITW A++S   +         LF  M  G     + P   T
Sbjct: 217 VGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHT 276

Query: 260 YLSSVMACSGLQALCEGRQIHGILW--KLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           +  S++  + L +         ++W  K    SDL + SAL+  +++ G  ++A  IF  
Sbjct: 277 F-GSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLS 335

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTS 373
            ++ + V++  ++VG  +  F EEA+++FV   +  ++++ +    +L         +  
Sbjct: 336 LKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG-TRNTVDVNADTYVVLLSALAEYSISEEG 394

Query: 374 LGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           L +G+ +H  ++++  T     V+NGL+NMY+KCG +E + K+F  M   + +SWN++I+
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
           A  ++GN  +A+  Y  M+   + P++   +S L +C+ + L+  G +
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQ 502



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 185/406 (45%), Gaps = 19/406 (4%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G   ++ + N L+ SY K    ++  +VF EM  RN ++WT ++SG V + + EE  ++F
Sbjct: 91  GLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVF 150

Query: 246 VKMHLGL---INPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDLCIESALMD 300
             M   +     P S T+ + + AC   G   L    Q+HG++ K    S+  + +AL+ 
Sbjct: 151 RAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALIS 210

Query: 301 MYSKC--GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG--IEI 356
           MY  C  G    A ++F+     D ++   ++  +A+ G       LF  M +    I++
Sbjct: 211 MYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQL 270

Query: 357 DP---NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
            P      S +        S  +  Q+   ++KS  +S+ +V + L++ +++ G  +++ 
Sbjct: 271 RPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAK 330

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F  +  +N+V+ N +I    R     +A++++   +   V+    T++ LL A +   
Sbjct: 331 DIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTR-NTVDVNADTYVVLLSALAEYS 389

Query: 474 LVNKGMEFLK----SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           +  +G+   +     M        +      +V+M  + G  IE+ S I ++    D + 
Sbjct: 390 ISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCG-AIESASKIFQLMEATDRIS 448

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           W  ++ A   +G+ E        L      SP+ + L++++ SC+G
Sbjct: 449 WNTIISALDQNGNCEEA-VMHYSLMRQSCISPSNFALISSLSSCAG 493



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 17/176 (9%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           + +H  +IK     + F+ N L+N Y+K   L  + +VF  M  RN+VSW  +++ +  H
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 438 GNGFKALELYEEMKLE---GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           G   +A  ++  M  E   G  PT  TF +LL AC      + G + L    +VH +  +
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQ-----DGGPDRLGFAVQVHGLVSK 195

Query: 495 AEHYA------CVVDMVGRA--GLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            E+ +       ++ M G    G  I A+   +  P++ D++ W AL+   +  GD
Sbjct: 196 TEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIR-DLITWNALMSVYAKKGD 250


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 313/552 (56%), Gaps = 18/552 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L  Y+K   +  A  LFD+MP RD+VSWNTM+SG+   G+ +  +  F   ++    
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT-CMKRSGS 97

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            +D  SF+ +L      +   + + +H LV   GYE  V VG++L+  Y KC       +
Sbjct: 98  DVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFE 157

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEG--------LKLFVKMHLGLINPNSLTYLSSV 264
            F E+   N ++W A+I+G VQ +  +          +K  V M  G   P  LT L   
Sbjct: 158 AFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAP-LLTLLDDP 216

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDG 323
           M C+ L      +Q+H  + KL LQ ++ I +A++  Y+ CGSV DA ++F+      D 
Sbjct: 217 MFCNLL------KQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDL 270

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +S   ++ GFAQ G  E+A++ F  +  + I++D    SA+L       +L LG+QIH+L
Sbjct: 271 ISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHAL 330

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGFK 442
             KS F SN FV + LI MYSKCG +E + K F +++ ++S V+WN+MI  +A+HG G  
Sbjct: 331 ATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQV 390

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           +L+L+ +M  + V+   VTF ++L ACSH GL+ +G+E L  M  V++I PR EHYA  V
Sbjct: 391 SLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAV 450

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++GRAGL+ +A+  IE MP+ PD +V +  LG C   G+ EM    A  L   +P+   
Sbjct: 451 DLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHF 510

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ ++++YS   +W+E+A   K MKE GV K  G SWIEI  QV +F  +D+ +P    
Sbjct: 511 TYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQD 570

Query: 623 IHGVLAELLRLM 634
           I+ ++ +L + M
Sbjct: 571 IYMMIKDLTQEM 582


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 326/629 (51%), Gaps = 46/629 (7%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRD-- 119
           G +    F K  +   +  +  V    V WN+++S Y +  Q   A K F +M  ++D  
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 120 --TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
              VSW  +++G  +NG        F++ +  G  + +  +    +SAC    L    + 
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGRE 383

Query: 178 IHCLVYLCGYEE---EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           IH   Y    EE   ++ VGN+L+  Y KC S    R+ FG ++  ++++W A+++G   
Sbjct: 384 IH--GYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 235 NQLYEEGLKL-----------------------------------FVKMHLGLINPNSLT 259
              +EE ++L                                   F +MH   ++PN+ T
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
              ++ AC  ++ L  G++IHG + +  ++    + SAL+ MYS C S+E A  +F    
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D V    I+   AQ+G    A+ L  +M  + +E++   + + L       +L  GK+
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH  II+    +  F+ N LI+MY +CG ++ S ++F  M  R+ VSWN MI+ +  HG 
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G  A+ L+++ +  G++P  +TF +LL ACSH GL+ +G ++ K M   + + P  E YA
Sbjct: 682 GMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++ RAG   E   FIE+MP +P+  VW +LLGAC IH + ++ +YAA  LF  +P 
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           S   Y+LMANIYS +GRW++ AK    MKE GV K  G SWIE+++++HSFVV D  HP 
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            + I   +  L   + + GYVP+  F+L 
Sbjct: 862 MEQISAKMESLYFDIKEIGYVPDTNFVLQ 890



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 204/456 (44%), Gaps = 63/456 (13%)

Query: 42  DNYVDI-SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           D  ++I + +L    K  +  LG  +HA  +          V  V     + + LL  Y 
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLV----------VNGVDVCEFLGSRLLEVYC 135

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           +   + +A ++FD M  R+  SW  ++  +   G+++     F   +  G  + D   F 
Sbjct: 136 QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFP 194

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +  AC   +   V K ++  +   G+E    V  +++  + KCG     R+ F E+  +
Sbjct: 195 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 254

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V  W  ++SG      +++ LK    M L  + P+ +T+                    
Sbjct: 255 DVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW-------------------- 294

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-------EFAEELDGVSMTVILVGF 333
                          +A++  Y++ G  E+A + F       +F   +  VS T ++ G 
Sbjct: 295 ---------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV--VSWTALIAGS 337

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-SDF 389
            QNG++ EA+ +F KMV  G++  PN ++    V    T+L L   G++IH   IK  + 
Sbjct: 338 EQNGYDFEALSVFRKMVLEGVK--PNSITIASAVSAC-TNLSLLRHGREIHGYCIKVEEL 394

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  V N L++ Y+KC  +E + + F  +   + VSWN+M+A +A  G+  +A+EL  E
Sbjct: 395 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSE 454

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           MK +G+EP  +T+  L+   +  G     +EF + M
Sbjct: 455 MKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 206/448 (45%), Gaps = 61/448 (13%)

Query: 38  KLVLD----NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           K+VL+    N + I+  +S          G  +H   IK  E         + +  ++ N
Sbjct: 352 KMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEE---------LDSDLLVGN 402

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM--------------------------- 126
           SL+ +Y KC  +  A + F  +   D VSWN M                           
Sbjct: 403 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEP 462

Query: 127 --------VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSK 176
                   V+GF + G+      FF+R   +G   +D  + TI   L+AC +     + K
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMG---MDPNTTTISGALAACGQVRNLKLGK 519

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  V     E    VG+ALI+ Y  C S      VF E+  R+V+ W ++IS   Q+ 
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
                L L  +M+L  +  N++T +S++ ACS L AL +G++IH  + +  L +   I +
Sbjct: 580 RSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+DMY +CGS++ + +IF+   + D VS  V++  +  +GF  +A+ LF +    G++ 
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK- 698

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS 412
            PN ++    +    +  GL ++   +  ++K+++  +P V     ++++ S+ G   ++
Sbjct: 699 -PNHIT-FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 756

Query: 413 IKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           ++   +M    N+  W S++ A   H N
Sbjct: 757 LEFIEKMPFEPNAAVWGSLLGACRIHCN 784



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 183/435 (42%), Gaps = 63/435 (14%)

Query: 250 LGLINPNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLC--IESALMDMYSKC 305
           + L NP+     Y S +  C  L  L  G Q+H  L  +    D+C  + S L+++Y + 
Sbjct: 80  MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQL--VVNGVDVCEFLGSRLLEVYCQT 137

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G VEDA ++F+   E +  S T I+  +   G  EE ++LF  MV  G+  D  +   V 
Sbjct: 138 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 197

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +  +GK ++  ++   F  N  V   +++M+ KCG ++ + + F  +  ++  
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
            WN M++ +   G   KAL+   +MKL GV+P  VT+ +++   +  G   +  ++   M
Sbjct: 258 MWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEM 317

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACS---- 538
             +    P    +  ++    + G   EA S   +M    VKP+ +   + + AC+    
Sbjct: 318 GGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSL 377

Query: 539 ------IHG--------DSEM---------------GKYAAEKLFLAQPDSPAPYILMAN 569
                 IHG        DS++                + A  K  + +      +  M  
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISW----------------IEIEKQVHSFVVD 613
            Y+  G  +E  + +  MK  G++ +  I+W                +E  +++HS  +D
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDI-ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD 496

Query: 614 DKMHPQADTIHGVLA 628
               P   TI G LA
Sbjct: 497 ----PNTTTISGALA 507


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 324/634 (51%), Gaps = 47/634 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+  AK G         A   + F+   + N++         N+LLS       + 
Sbjct: 51  LNHLLTAYAKSGRL-------ARARRVFDEMPDPNLFTR-------NALLSALAHSRLVP 96

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSA 165
           +  +LF  MP RD VS+N +++GF   G        ++  L     +  + + + +I+ A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--- 222
              S+ +L    +HC V   G+     VG+ L+  Y K G     R+VF EM  + V   
Sbjct: 157 SALSDRAL-GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 223 ----------------------------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
                                       ITWT +++GL QN L  E L +F +M    + 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            +  T+ S + AC  L AL EG+QIH  + +   + ++ + SAL+DMYSKC S+  A  +
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      + +S T ++VG+ QN   EEA++ F +M   GI+ D   + +V+       SL
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G Q H L + S       V+N L+ +Y KCG +ED+ ++F  M+  + VSW +++  +
Sbjct: 396 EEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGY 455

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G   + ++L+E+M   G++P  VTF+ +L ACS  GLV KG ++  SM + H I P 
Sbjct: 456 AQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HY C++D+  R+G   EA  FI++MP  PD   W  LL +C + G+ E+GK+AAE L 
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P +PA Y+L+ ++++  G+W E A   + M++  V KE G SWI+ + +VH F  DD
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP +  I+  L  L   M +EGY P+   +LH
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLH 669


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 307/541 (56%), Gaps = 3/541 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +FDD+  +D VSW  MV+ +  N  ++     F +   +G Y+ +  + +  L +C 
Sbjct: 190 ARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG-YKPNNFTISGALKSCL 248

Query: 168 RSELSLVSKMIH-CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             E   V K +H C +  C Y+ ++ VG AL+  Y K G     +++F EM   ++I W+
Sbjct: 249 GLEAFNVGKSVHGCALKGC-YDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWS 307

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I+   Q+   +E L LF++M    + PN+ T+ S + AC+   +L  G+QIH  + K 
Sbjct: 308 LMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKF 367

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L S++ + +A+MD+Y+KCG +E++ ++FE   + + V+   I+VG+ Q G  E AM LF
Sbjct: 368 GLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLF 427

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
             M++  ++      S+VL       +L  G QIHSL IK+ +  +  V N LI+MY+KC
Sbjct: 428 THMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKC 487

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G + D+   F +M  R+ VSWN+MI  ++ HG   +AL L++ M+    +P  +TF+ +L
Sbjct: 488 GRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVL 547

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACS+ GL+ KG    +SM++ + I P  EHY C+V ++GR G   EA   I  +  +P 
Sbjct: 548 SACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPS 607

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           V+VW+ALLGAC IH   ++G+  A+ +   +P   A ++L++N+Y+ +GRW   A   K 
Sbjct: 608 VMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKY 667

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           M++  V KE G+SW+E +  VH F V D  HP    I  +L  L +   D GYVP+   +
Sbjct: 668 MQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAV 727

Query: 647 L 647
           L
Sbjct: 728 L 728



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 262/455 (57%), Gaps = 11/455 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+FY++ + +++A KLFD+MP  +T+S+ T+  G+ R+ +F     F  R  + G +
Sbjct: 74  NILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEG-H 132

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++   FT +L      +L+ +   +H  VY  G+  +  VG ALI +Y   G+    R 
Sbjct: 133 EVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARH 192

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  +++++WT +++   +N  YEE L+LF +M +    PN+ T   ++ +C GL+A
Sbjct: 193 VFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEA 252

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+ +HG   K     DL +  AL+++Y+K G + DA ++FE   + D +  ++++  
Sbjct: 253 FNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIAR 312

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ+   +EA+ LF++M +  +  +    ++VL       SL LGKQIHS ++K    SN
Sbjct: 313 YAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSN 372

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV+N ++++Y+KCG++E+S+K+F  +  RN V+WN++I  + + G+G +A+ L+  M  
Sbjct: 373 VFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLE 432

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++PT+VT+ S+L A + +  +  G++     +K+M     +   +     ++DM  + 
Sbjct: 433 HDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS-----LIDMYAKC 487

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           G + +AR   ++M  K D + W A++   S+HG S
Sbjct: 488 GRINDARLTFDKMN-KRDEVSWNAMICGYSMHGMS 521



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 191/397 (48%), Gaps = 13/397 (3%)

Query: 154 LDQASFTIILSACDRSELS-LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           LD  S+  +L    R+    +  K +HC +   G   ++   N L+  Y +  S     K
Sbjct: 32  LDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASK 91

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEG----LKLFVKMHLGLINPNSLTYLSSVMACS 268
           +F EM   N I++  +  G  ++  + +     L++F + H   +NP   T L  ++   
Sbjct: 92  LFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGH--EVNPFVFTTLLKLLVSM 149

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L  LC    +H  ++KL   +D  + +AL+D YS  G+V+ A  +F+     D VS T 
Sbjct: 150 DLAHLC--WTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTG 207

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKS 387
           ++  +A+N F EE++QLF +M   G + +   +S  L    G++ +  +GK +H   +K 
Sbjct: 208 MVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLE-AFNVGKSVHGCALKG 266

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +  + FV   L+ +Y+K G++ D+ ++F  M   + + W+ MIA +A+     +AL+L+
Sbjct: 267 CYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLF 326

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+   V P + TF S+L AC+    ++ G + + S      ++        ++D+  +
Sbjct: 327 LRMRQTSVVPNNFTFASVLQACASSVSLDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAK 385

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G +  +    E +P + DV  W  ++      GD E
Sbjct: 386 CGEIENSMKLFEELPDRNDV-TWNTIIVGYVQLGDGE 421


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/543 (34%), Positives = 303/543 (55%), Gaps = 25/543 (4%)

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
           S F  +  + +    + R L++   ++D      +L AC +  ++ + K IH      G 
Sbjct: 84  SPFESHPRYALNTYTYMRKLDI---EVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGL 140

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW---------------------- 225
             +V V NAL+  Y +CGS  S R +F +M  R+V++W                      
Sbjct: 141 VSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSW 200

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TA+I+G ++    EEG +LFV+M    + PN +T LS +++C  + A+  G+++H  + +
Sbjct: 201 TAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILR 260

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
                 L + +AL+DMY KCG +  A  IF+  +  D ++ T ++  +AQ    + A QL
Sbjct: 261 NGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQL 320

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           FV+M   G+  +   + ++L +  V+ +L +GK  H+ I K     +  +   LI+MY+K
Sbjct: 321 FVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAK 380

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CGD+  + ++FS    R+  +WN M+A +  HG G KAL+L+ EM+  GV+P D+TF+  
Sbjct: 381 CGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGA 440

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           LHACSH GLV +G    + M     + P+ EHY C+VD++GRAGLL EA   IE MPV P
Sbjct: 441 LHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTP 500

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           ++ +W A+L AC IH +S MG+ AA +L   +P +    +LM+NIY+ + RW + A   K
Sbjct: 501 NIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRK 560

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
            +K+ G+ KE G+S IE+   VH F + D  HP  + I  +LAE+ + + + GY+P+   
Sbjct: 561 AVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSV 620

Query: 646 ILH 648
           +LH
Sbjct: 621 VLH 623



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 196/389 (50%), Gaps = 37/389 (9%)

Query: 83  YNVPNATV----IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT------------- 125
           ++V N  V    + N+L+  Y +C  + +A  LFD M  RD VSW+T             
Sbjct: 134 FSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFS 193

Query: 126 ---------MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
                    M++G++R  + + G   F R +E   +  D    ++I+S C       + K
Sbjct: 194 QRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIIS-CGFVGAVQLGK 252

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H  +   G+   + +  AL+  Y KCG   S R +F  M+ ++V+TWTA+IS   Q  
Sbjct: 253 RLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQAN 312

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             +   +LFV+M    + PN LT +S +  C+   AL  G+  H  + K  ++ D+ +++
Sbjct: 313 CIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKT 372

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+DMY+KCG +  A ++F  A + D  +  V++ G+  +G+ E+A++LF +M   G++ 
Sbjct: 373 ALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVK- 431

Query: 357 DPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLED 411
            PN ++  +G     +  GL   GK +   +I  DF   P V +   ++++  + G L++
Sbjct: 432 -PNDIT-FIGALHACSHAGLVVEGKGLFEKMIH-DFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 412 SIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           + K+   M    +++ W +M+AA   H N
Sbjct: 489 AYKMIESMPVTPNIAIWGAMLAACKIHKN 517



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 128/260 (49%), Gaps = 12/260 (4%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LHA  ++        N + +  +  +  +L+  Y KC ++R+A  +FD M  
Sbjct: 246 GAVQLGKRLHAYILR--------NGFGM--SLALATALVDMYGKCGEIRSARAIFDSMKN 295

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           +D ++W  M+S + +    D  F  F +  + G  + ++ +   +LS C  +    + K 
Sbjct: 296 KDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGV-RPNELTMVSLLSLCAVNGALDMGKW 354

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
            H  +   G E +V +  ALI  Y KCG  S  +++F E   R++ TW  +++G   +  
Sbjct: 355 FHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGY 414

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKLALQSDLCIES 296
            E+ LKLF +M    + PN +T++ ++ ACS    + EG+ +   ++    L   +    
Sbjct: 415 GEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYG 474

Query: 297 ALMDMYSKCGSVEDAWQIFE 316
            ++D+  + G +++A+++ E
Sbjct: 475 CMVDLLGRAGLLDEAYKMIE 494


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 185/561 (32%), Positives = 317/561 (56%), Gaps = 2/561 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + NSL++ Y+ C  + +A ++F   P ++ VSW  ++SG  +N  F      F R + 
Sbjct: 56  TFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVF-REMT 114

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G ++ +  + + +L A     L  ++K +HC     G+E  V V  AL+  Y K G   
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F  M  RNV++W A++SG   +   EE + LF  M    +  +  T +S + A  
Sbjct: 175 VARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +  L  G  IHG + +   ++D  I++ALMD+Y     V+DA ++F      D  + T+
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTL 294

Query: 329 ILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           +L GF+     + A++ F KM+    +++D  ++  +L       +L  G+++H+L IK+
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F +N FV + +I+MY+ CG+LED+ + F  M  ++ V WN+MIA    +G G  A++L+
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +MK  G++P + TF+S+L+ACSH G+V +G++    M +     P  +HYACV+D++GR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGR 474

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L  A SFI  MP +PD  V+  LLGAC IHG+ ++G   ++K+F  +P+    Y+L+
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+Y+ +G W+        ++   + K+ G S IEI +++++F+  +K HPQ   I G+L
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGIL 594

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVPN   +L 
Sbjct: 595 KGLILKIKKAGYVPNTNVLLQ 615



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 113/446 (25%), Positives = 220/446 (49%), Gaps = 30/446 (6%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKM--------IHCLVYLCGYEEEVTVGNALI 198
           +   FY+   ++ T  L    +S  S++ K+        IH  +   G      + N+L+
Sbjct: 4   VNFNFYRHLSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLM 63

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
            +Y  CG  +  +++F     +NV++WT +ISGL +N  + E + +F +M +G   PN++
Sbjct: 64  NAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAV 123

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T  S + A + L  +   + +H    +   + ++ +E+AL+DMYSK G +  A Q+FE  
Sbjct: 124 TISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESM 183

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            E + VS   I+ G++ +GF EEA+ LF  M + G+ +D   + +++        L +G 
Sbjct: 184 SERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGT 243

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            IH  II++ + ++  +   L+++Y     ++D+ +VFS M  ++  +W  M+  F+   
Sbjct: 244 GIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGR 303

Query: 439 NGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           +  +A++ + +M  ++ ++   +  + +L +CSH G + +G         VH ++ +   
Sbjct: 304 HWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQG-------RRVHALAIKTCF 356

Query: 498 Y------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
                  + V+DM    G L +A+ F   M  K DV+ W A++    ++G        A 
Sbjct: 357 ANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEK-DVVCWNAMIAGNGMNGYGT----DAI 411

Query: 552 KLFLAQPDS---PAPYILMANIYSCS 574
            LFL    S   P     ++ +Y+CS
Sbjct: 412 DLFLQMKGSGLDPDESTFVSVLYACS 437



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 12/133 (9%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           L LD+ V +  +LS  +  G    G  +HA  IKT             N   + ++++  
Sbjct: 321 LKLDSIV-LMGILSSCSHSGALQQGRRVHALAIKTC----------FANNIFVGSAVIDM 369

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y  C  + +A + F  M  +D V WN M++G   NG        F +    G    D+++
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGL-DPDEST 428

Query: 159 FTIILSACDRSEL 171
           F  +L AC  + +
Sbjct: 429 FVSVLYACSHAGM 441


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 202/589 (34%), Positives = 318/589 (53%), Gaps = 18/589 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   +KT    D           V+ +SL+  Y KC+    A+ LF++MP +D  
Sbjct: 124 LGKMIHTCLVKTGLMMD----------IVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVA 173

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM-IHC 180
            WNT++S + ++G F     +F      GF + +  + T  +S+C R  L L   M IH 
Sbjct: 174 CWNTVISCYYQSGNFKEALEYFGLMRRFGF-EPNSVTITTAISSCARL-LDLNRGMEIHE 231

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
            +   G+  +  + +AL+  Y KCG      +VF +M  + V+ W ++ISG         
Sbjct: 232 ELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSIS 291

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            ++LF +M+   + P   T  S +M CS    L EG+ +HG   +  +QSD+ I S+LMD
Sbjct: 292 CIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMD 351

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           +Y KCG VE A  IF+   +   VS  V++ G+   G   EA+ LF +M K+ +E D   
Sbjct: 352 LYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAIT 411

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            ++VL       +L  G++IH+LII+    +N  V   L++MY+KCG ++++  VF  + 
Sbjct: 412 FTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP 471

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ VSW SMI A+  HG  + ALEL+ EM    ++P  VTFL++L AC H GLV++G  
Sbjct: 472 KRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCY 531

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALLGACSI 539
           +   M  V+ I PR EHY+C++D++GRAG L EA   +++ P ++ DV +   L  AC +
Sbjct: 532 YFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRL 591

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           H + ++G   A  L    PD  + YIL++N+Y+ + +W E      +MKE+G+ K  G S
Sbjct: 592 HRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCS 651

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI +++  F V+D  H   + +   L+ L   M DE    +K F  H
Sbjct: 652 WIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE----SKPFTYH 696



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 239/471 (50%), Gaps = 7/471 (1%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFF 143
           + N   +  +L++ YL C    +A  +FD+M     +S WN +++G+ +N  +      F
Sbjct: 34  LQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELF 93

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           ++ L   + + D  ++  +L AC      ++ KMIH  +   G   ++ VG++L+  Y K
Sbjct: 94  EKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAK 153

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           C +      +F EM  ++V  W  VIS   Q+  ++E L+ F  M      PNS+T  ++
Sbjct: 154 CNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTA 213

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + +C+ L  L  G +IH  L       D  I SAL+DMY KCG +E A ++FE   +   
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTV 273

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+   ++ G+   G     +QLF +M   G++     +S+++ V      L  GK +H  
Sbjct: 274 VAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I++   S+ F+N+ L+++Y KCG +E +  +F  +     VSWN MI+ +   G  F+A
Sbjct: 334 TIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+ EM+   VEP  +TF S+L ACS +  + KG E    + E  ++         ++D
Sbjct: 394 LGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIE-KKLDNNEVVMGALLD 452

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           M  + G + EA S  + +P K D++ W +++ A   HG +    Y A +LF
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGQA----YVALELF 498



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 205/413 (49%), Gaps = 10/413 (2%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D      +L AC  S+     K+IH  V   G + ++ +   LI  Y  C      + V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCV 60

Query: 214 FGEMRVRNVIT-WTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQ 271
           F  M     I+ W  +++G  +N +Y E L+LF K +H   + P+S TY S + AC GL 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLY 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G+ IH  L K  L  D+ + S+L+ MY+KC + E A  +F    E D      ++ 
Sbjct: 121 KYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDF 389
            + Q+G  +EA++ F  M + G E  PN V+    +      L L  G +IH  +I S F
Sbjct: 181 CYYQSGNFKEALEYFGLMRRFGFE--PNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + F+++ L++MY KCG LE +I+VF +M  +  V+WNSMI+ +   G+    ++L++ 
Sbjct: 239 LLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKR 298

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EGV+PT  T  SL+  CS    + +G +F+   T  +RI       + ++D+  + G
Sbjct: 299 MYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQSDVFINSSLMDLYFKCG 357

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGD--SEMGKYAAEKLFLAQPDS 560
            +  A +  + +P K  V+ W  ++      G     +G ++  +    +PD+
Sbjct: 358 KVELAENIFKLIP-KSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDA 409


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/598 (31%), Positives = 319/598 (53%), Gaps = 12/598 (2%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           L    + G   LG  LHA  + +              +T + N L++ Y  C  + +AV+
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGA---------AAASTFLANHLITMYSHCADVPSAVR 74

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LFD MP  + VSW T+VSG  +N         F      G     Q + +    A     
Sbjct: 75  LFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPT-QFALSSAARAAAALA 133

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                  +HC+    G++ E+ V + L   Y K G      +VF +M  ++ + WTA+I 
Sbjct: 134 ARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMID 193

Query: 231 GLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           G  +N   E  +  F  M   GL+  +     S + A  GL+     R IH  + K   +
Sbjct: 194 GYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFE 253

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            ++ + +AL DMY+K   +++A ++ +  +  L+ VS T ++ G+ +    E+A+ +F++
Sbjct: 254 QEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIE 313

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           + + G+E +    S+++    +   L  G Q+H+ +IK+   S+ FV++ L++MY KCG 
Sbjct: 314 LRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGL 373

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +  SI++F  +     ++WN+ I   A+HG+G +A+  ++ M   G+ P  +TF+SLL A
Sbjct: 374 ISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTA 433

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           CSH GLV++G+++  SM + H I P+ EHY+C++DM GRAG L EA  FI  MPVKP+  
Sbjct: 434 CSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAY 493

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
            W +LLGAC + G+ E+G+ AA+ +   +PD+   ++ ++ IY+  G+W++     K M+
Sbjct: 494 GWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMR 553

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           +  + K  G SW++  K+ H F  +D  HPQ + I+  L EL   + +EGYVP+ RF+
Sbjct: 554 DNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFL 611


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 177/455 (38%), Positives = 273/455 (60%), Gaps = 1/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLI 253
           N +I+ Y K G+    R +F +M  R+  +WTA+ISG VQ+   EE L+L+  M      
Sbjct: 188 NIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYS 247

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
             N  T  S++ A + + +L  G++IHG + ++ L SD  +  +L+DMY KCGS+E+A  
Sbjct: 248 KSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARY 307

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           IF+  EE D VS T ++  + +NG  EE   LF  ++ + I  +    + VL       +
Sbjct: 308 IFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAA 367

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
             LGKQIH+ +++  F S     + L++MYSKCGD+E++  VF  +   +  SW S++  
Sbjct: 368 EDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVG 427

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A+HG   KAL  +E +   G +P  + F+ +L AC+H GLV+KG+E+  S+ E H ++ 
Sbjct: 428 YAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTR 487

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HYAC++D++ RAG   EA S I  MP+KPD  +W ALLG C IHG+ E+ K AA+ L
Sbjct: 488 TIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSL 547

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F  +P++PA Y+ +ANIY+ +G   E A   + M   G+ K+ G+SWIEI ++VH F V 
Sbjct: 548 FEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVG 607

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HP++  I   L+EL + M + GYVP+  F+LH
Sbjct: 608 DNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLH 642



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 199/428 (46%), Gaps = 56/428 (13%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N LL  Y KC  + +A K+FD+M  RD  SWN M+SG+++ G F+     F +     
Sbjct: 155 ISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDK----- 209

Query: 151 FYQLDQASFTIILSAC---DRSELSL---------------------------------V 174
               D  S+T I+S C   +R E +L                                 +
Sbjct: 210 MPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHM 269

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            K IH  +   G + +  V  +L+  Y KCGS    R +F +M  R+V++WT +I   ++
Sbjct: 270 GKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLK 329

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N   EEG  LF  +    I PN  T+   + AC+ L A   G+QIH  + ++   S    
Sbjct: 330 NGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL+ MYSKCG +E+A  +FE   + D  S T +LVG+AQ+G  ++A+  F  ++K+G 
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGT 449

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           + D     A +GV       GL  +     HS+  K   T        +I++ ++ G   
Sbjct: 450 KPDG---IAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFT 506

Query: 411 DSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD-VTFLSLL 466
           ++  + + M  + +   W +++     HGN    LEL +     L  +EP +  T+++L 
Sbjct: 507 EAESIINEMPIKPDKYIWAALLGGCRIHGN----LELAKRAAKSLFEIEPENPATYVTLA 562

Query: 467 HACSHVGL 474
           +  +  G+
Sbjct: 563 NIYASAGM 570



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 178/379 (46%), Gaps = 46/379 (12%)

Query: 227 AVISGLVQNQLYEEGLKLF---------VKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           A I+ L  ++L++E + +          V++   +  P +  YL+ +  C   +AL EG+
Sbjct: 80  AYINRLCDSKLFKEAIDILCGQSRLREAVQLLYRIEKPYASIYLTLLKFCLKQRALKEGK 139

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDA--------------WQI--------- 314
           Q+H  + K +    L I + L+DMY+KCGS+ DA              W I         
Sbjct: 140 QVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGG 198

Query: 315 -FEFAEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVL 365
            FE A  L       D  S T I+ G  Q+   EEA++L+  M K    + +   +S+ L
Sbjct: 199 NFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSAL 258

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  SL +GK+IH  I++    S+  V   L++MY KCG +E++  +F +M  R+ V
Sbjct: 259 AASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVV 318

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW +MI  + ++G   +   L+  +    + P D TF  +L+AC+ +   + G +    M
Sbjct: 319 SWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYM 378

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
             V   S  +   A +V M  + G +  A+S  E +P +PD+  W +LL   + HG  + 
Sbjct: 379 VRVGFDSFSSAASA-LVHMYSKCGDIENAKSVFEILP-QPDLFSWTSLLVGYAQHGQHDK 436

Query: 546 GKYAAEKLFLA--QPDSPA 562
             +  E L  +  +PD  A
Sbjct: 437 ALHFFELLLKSGTKPDGIA 455



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 144/319 (45%), Gaps = 17/319 (5%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            H+G  +H   ++            + +  V+W SLL  Y KC  +  A  +FD M  RD
Sbjct: 267 LHMGKKIHGHIMRM----------GLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERD 316

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            VSW TM+  +L+NG  + GF  F+  +       D  +F  +L+AC       + K IH
Sbjct: 317 VVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND-FTFAGVLNACADLAAEDLGKQIH 375

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             +   G++   +  +AL+  Y KCG   + + VF  +   ++ +WT+++ G  Q+  ++
Sbjct: 376 AYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHD 435

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESAL 298
           + L  F  +      P+ + ++  + AC+    + +G +  H I  K  L   +   + +
Sbjct: 436 KALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACI 495

Query: 299 MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           +D+ ++ G   +A  I  E   + D      +L G   +G     ++L  +  K+  EI+
Sbjct: 496 IDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHG----NLELAKRAAKSLFEIE 551

Query: 358 PNMVSAVLGVFGVDTSLGL 376
           P   +  + +  +  S G+
Sbjct: 552 PENPATYVTLANIYASAGM 570



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 23/247 (9%)

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            EA+QL  ++ K    I   ++   L       +L  GKQ+H+ I K+  +   +++N L
Sbjct: 105 REAVQLLYRIEKPYASIYLTLLKFCLK----QRALKEGKQVHAHI-KTSGSIGLYISNRL 159

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY+KCG L D+ KVF  M  R+  SWN MI+ + + GN  KA  L+++M        +
Sbjct: 160 LDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP----NRDN 215

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA----- 514
            ++ +++  C       + +E  + M + H  S   +   C +     A   I +     
Sbjct: 216 FSWTAIISGCVQHNRPEEALELYRLMQK-HDYSKSNK---CTISSALAASAAIPSLHMGK 271

Query: 515 --RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
                I RM +  D +VW +LL      G  E  +Y  +K+   +      +  M + Y 
Sbjct: 272 KIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKM---EERDVVSWTTMIHTYL 328

Query: 573 CSGRWKE 579
            +GR +E
Sbjct: 329 KNGRREE 335


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 326/576 (56%), Gaps = 11/576 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +HAS +K+     +  +Y       + N+L++ Y +C +M  A ++   M   D V
Sbjct: 302 LGKEIHASVLKS--STHSSELY-------VCNALIAMYTRCGKMPQAERILRQMNNADVV 352

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+++ G+++N  +     FF   +  G ++ D+ S T I++A  R    L    +H  
Sbjct: 353 TWNSLIKGYVQNLMYKEALEFFSDMIAAG-HKSDEVSMTSIIAASGRLSNLLAGMELHAY 411

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V   G++  + VGN LI  Y KC  +    + F  M  +++I+WT VI+G  QN  + E 
Sbjct: 412 VIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEA 471

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+LF  +    +  + +   S + A S L+++   ++IH  + +  L  D  I++ L+D+
Sbjct: 472 LELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-DTVIQNELVDV 530

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KC ++  A ++FE  +  D VS T ++   A NG E EA++LF +MV+ G+  D   +
Sbjct: 531 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
             +L      ++L  G++IH  +++  F     +   +++MY+ CGDL+ +  VF R+  
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 650

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +  + + SMI A+  HG G  A+EL+++M+ E V P  ++FL+LL+ACSH GL+++G  F
Sbjct: 651 KGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGF 710

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           LK M   + + P  EHY C+VDM+GRA  ++EA  F++ M  +P   VW ALL AC  H 
Sbjct: 711 LKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHS 770

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G+ AA++L   +P +P   +L++N+++  GRW +  K   +MK  G++K  G SWI
Sbjct: 771 EKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWI 830

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           E++ +VH F   DK HP++  I+  L+E+ R +  E
Sbjct: 831 EMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLERE 866



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 139/500 (27%), Positives = 249/500 (49%), Gaps = 25/500 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L +  K      G  LH+   KTF  F+            +   L+  Y KC  + +A 
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFE---------LDFLAGKLVFMYGKCGSLDDAE 136

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+FD+MP R   +WNTM+  ++ NGE       +  ++ +    L  +SF  +L AC + 
Sbjct: 137 KVFDEMPDRTAFAWNTMIGAYVSNGEPASALALY-WNMRVEGVPLGLSSFPALLKACAKL 195

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAV 228
                   +H L+   GY     + NAL++ Y K    S+ R++F   + + + + W ++
Sbjct: 196 RDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSI 255

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +S    +    E L+LF +MH+    PNS T +S++ AC G      G++IH  + K + 
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 289 Q-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
             S+L + +AL+ MY++CG +  A +I       D V+   ++ G+ QN   +EA++ F 
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 375

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M+ AG + D   +++++   G  ++L  G ++H+ +IK  + SN  V N LI+MYSKC 
Sbjct: 376 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 435

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
                 + F RM  ++ +SW ++IA +A++    +ALEL+ ++  + +E  ++   S+L 
Sbjct: 436 LTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILR 495

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGRAGLLIEARSFIERMP 522
           A S    V K M  +K   E+H    R      V     VD+ G+   +  A    E + 
Sbjct: 496 ASS----VLKSMLIVK---EIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIK 548

Query: 523 VKPDVLVWQALLGACSIHGD 542
            K DV+ W +++ + +++G+
Sbjct: 549 GK-DVVSWTSMISSSALNGN 567



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 184/386 (47%), Gaps = 13/386 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVY--LCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           +F  +L  C +       + +H  ++     +E +   G  L+  Y KCGS     KVF 
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVFMYGKCGSLDDAEKVFD 140

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           EM  R    W  +I   V N      L L+  M +  +     ++ + + AC+ L+ +  
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFA 334
           G ++H +L KL   S   I +AL+ MY+K   +  A ++F+ F E+ D V    IL  ++
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHSLIIKSD-FTS 391
            +G   E ++LF +M   G    PN  + V  +   D  +   LGK+IH+ ++KS   +S
Sbjct: 261 TSGKSLETLELFREMHMTGPA--PNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSS 318

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             +V N LI MY++CG +  + ++  +M   + V+WNS+I  + ++    +ALE + +M 
Sbjct: 319 ELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMI 378

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G +  +V+  S++ A   +  +  GME L +    H      +    ++DM  +  L 
Sbjct: 379 AAGHKSDEVSMTSIIAASGRLSNLLAGME-LHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437

Query: 512 IE-ARSFIERMPVKPDVLVWQALLGA 536
               R+F+ RM  K D++ W  ++  
Sbjct: 438 CYMGRAFL-RMHDK-DLISWTTVIAG 461



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 17/220 (7%)

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           VL + G   ++  G+Q+HS I K+ F S    F+   L+ MY KCG L+D+ KVF  M  
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKT-FPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPD 144

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R + +WN+MI A+  +G    AL LY  M++EGV     +F +LL AC+ +  +  G   
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG--- 201

Query: 482 LKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
               +E+H +  +  +++       +V M  +   L  AR   +    K D ++W ++L 
Sbjct: 202 ----SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           + S  G S        ++ +  P +P  Y +++ + +C G
Sbjct: 258 SYSTSGKSLETLELFREMHMTGP-APNSYTIVSALTACDG 296


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 321/566 (56%), Gaps = 17/566 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD---MGFGFFKRSLEL 149
           N L++ Y KC  +  A ++F  +  RD VSWNT++S   +NG  +   M +   ++    
Sbjct: 414 NGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGC-- 471

Query: 150 GFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               +  ++F  I  LS+C    L    + +HC     G + + +V NAL+  Y  CG+ 
Sbjct: 472 ----ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGAR 527

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           S   ++F  M   ++++W +++  +V +     E +++F  M    + PN +T+++ + A
Sbjct: 528 SESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSA 587

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVS 325
            S L  L  G+Q+H ++ K     D  +++ALM  Y+K G ++   Q+F   +   D VS
Sbjct: 588 LSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVS 647

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G+  NG  +E M     M+ +   +D    S VL       +L  G ++H+  I
Sbjct: 648 WNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGI 707

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +S   S+  V + L++MYSKCG ++ + KVF+ M+ +N  SWNSMI+ +ARHG G KALE
Sbjct: 708 RSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALE 767

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++EEM+  G  P  VTF+S+L ACSH GLV++G+++ + M E H I P  EHY+CV+D++
Sbjct: 768 IFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLL 826

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGAC--SIHGDS-EMGKYAAEKLFLAQPDSPA 562
           GRAG L++ + +I RMP+KP+ L+W+ +L AC  S  GD  ++GK A+  L   +P +P 
Sbjct: 827 GRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPV 886

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+L +N Y+ +GRW++ AKA   M    + KE G SW+ +   VH+F+  D+ HP    
Sbjct: 887 NYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKE 946

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  L  L++ + + GYVP   F L+
Sbjct: 947 IYEKLNFLIQKIKNAGYVPMTEFALY 972



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 241/486 (49%), Gaps = 26/486 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+S + +   +  A  +F ++  R+ V+ N ++ G ++    +   G F  + +  
Sbjct: 307 VGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRD-- 364

Query: 151 FYQLDQASFTIILSACDRSELS----LVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCG 205
            + ++  +F ++LSA     +     +  + +H  +   G  + ++ + N L+  Y KCG
Sbjct: 365 SFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCG 424

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           +     +VF  +  R+ ++W  +IS L QN   E  +  +  M  G I+P++   +S + 
Sbjct: 425 AIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLS 484

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+ L+ L  G+Q+H    K  L  D  + +AL+ MY  CG+  ++W+IF    E D VS
Sbjct: 485 SCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVS 544

Query: 326 MTVIL-VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHS 382
              I+ V  + +    E++++F  M+++G+   PN V+ V  L      + L LGKQ+H+
Sbjct: 545 WNSIMGVMVSSHAPTAESVEVFSNMMRSGLT--PNKVTFVNLLSALSPLSVLELGKQVHA 602

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGF 441
           +++K     +  V+N L++ Y+K GD++   ++FS M+  R++VSWNSMI+ +  +G+  
Sbjct: 603 VVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEH 497
           + ++    M          TF  +L+AC+ V  + +GME     ++S  E   +   A  
Sbjct: 663 ETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESA-- 720

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
              ++DM  + G +  A      M  K +   W +++   + HG   +G+ A E     Q
Sbjct: 721 ---LLDMYSKCGRIDYASKVFNSMSQKNE-FSWNSMISGYARHG---LGEKALEIFEEMQ 773

Query: 558 PDSPAP 563
            +   P
Sbjct: 774 RNGACP 779



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 224/463 (48%), Gaps = 27/463 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-- 150
           N L++ Y K  ++  A ++FD M  R+ VSW  +VSG++ +G  D  F  FK  L  G  
Sbjct: 95  NHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSE 154

Query: 151 FYQLDQASFTIILSACDRS--ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC--GS 206
           F +    +F  +L AC  +  +L   +  +H LV    Y    TV NALI+ Y  C  G 
Sbjct: 155 FSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGL 214

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNSLTYLS 262
               ++VF    VR++ITW A++S   +         LF+ M        + PN  T+ S
Sbjct: 215 PLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGS 274

Query: 263 SVMACSGLQALCEG--RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            + A S L +   G   Q+   + K    SDL + SAL+  +++ G +++A  IF   +E
Sbjct: 275 LITATS-LSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKE 333

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV---SAVLGVFGVDTSLGLG 377
            + V++  ++VG  +    EEA+ +F+    + +      V   SAV      +  L  G
Sbjct: 334 RNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRG 393

Query: 378 KQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           +++H  I+++        ++NGL+NMY+KCG ++ + +VF  +  R+ VSWN++I+   +
Sbjct: 394 REVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQ 453

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRIS 492
           +G    A+  Y  M+   + P++   +S L +C+ + L+  G +     +K   ++    
Sbjct: 454 NGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSV 513

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             A     +V M G  G   E+      M  + D++ W +++G
Sbjct: 514 SNA-----LVKMYGDCGARSESWEIFNSM-AEHDIVSWNSIMG 550



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/468 (25%), Positives = 213/468 (45%), Gaps = 39/468 (8%)

Query: 76  PFDNQNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           P   Q V++       + WN+L+S Y K   + +   LF  M   D+          LR 
Sbjct: 215 PLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIE-------LRP 267

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
            E   G      S                LS+C     S V   +   V   G   ++ V
Sbjct: 268 NEHTFGSLITATS----------------LSSCS----SGVLDQVFARVLKSGSSSDLYV 307

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-L 252
           G+AL++++ + G     + +F  ++ RN +T   +I GLV+    EE + +F+      +
Sbjct: 308 GSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFV 367

Query: 253 INPNSLTYLSSVMACSGL--QALCEGRQIHGILWKLAL-QSDLCIESALMDMYSKCGSVE 309
           +N ++   L S +A   +    L  GR++HG + +  L    + + + L++MY+KCG+++
Sbjct: 368 VNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAID 427

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
            A ++F      D VS   I+    QNGF E AM  +  M++ G  I P+  +A+ G+  
Sbjct: 428 KASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYC-MMRQGC-ISPSNFAAISGLSS 485

Query: 370 VDT--SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
             +   L  G+Q+H   +K     +  V+N L+ MY  CG   +S ++F+ MA  + VSW
Sbjct: 486 CASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSW 545

Query: 428 NSMIAAF-ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           NS++    + H    +++E++  M   G+ P  VTF++LL A S + ++  G +    + 
Sbjct: 546 NSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVL 605

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +   I   A   A ++    ++G +         M  + D + W +++
Sbjct: 606 KHGAIEDNAVDNA-LMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMI 652



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 197/397 (49%), Gaps = 24/397 (6%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT----MVSGFLRNGEFDMGFGFFK 144
           T + N+L+  Y  C     + ++F+ M   D VSWN+    MVS      E    F    
Sbjct: 511 TSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMM 570

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           RS   G    ++ +F  +LSA     +  + K +H +V   G  E+  V NAL++ Y K 
Sbjct: 571 RS---GLTP-NKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKS 626

Query: 205 GSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLK-LFVKMHLGLINPNSLTYLS 262
           G   S  ++F  M   R+ ++W ++ISG + N   +E +  +++ MH   +  +  T+  
Sbjct: 627 GDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQM-LDCCTFSI 685

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+ + AL  G ++H    +  L+SD+ +ESAL+DMYSKCG ++ A ++F    + +
Sbjct: 686 VLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKN 745

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL-GKQIH 381
             S   ++ G+A++G  E+A+++F +M + G    P+ V+ V  V    +  GL  + + 
Sbjct: 746 EFSWNSMISGYARHGLGEKALEIFEEMQRNG--ACPDHVTFV-SVLSACSHAGLVDRGLD 802

Query: 382 SLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHG 438
              +  D    P + +   +I++  + G L    +  +RM  + N++ W +++ A  +  
Sbjct: 803 YFEMMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSK 862

Query: 439 NGFKALELYEE-----MKLEGVEPTDVTFLSLLHACS 470
           +G + ++L +E     ++LE   P +    S  +A +
Sbjct: 863 DGDR-IDLGKEASRMLLELEPQNPVNYVLASNFYAAT 898



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 195/429 (45%), Gaps = 32/429 (7%)

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           +A +R  L LV +         G   ++ + N L+  Y K    ++ R+VF  M  RN +
Sbjct: 73  AAPERLHLELVKR---------GLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAV 123

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYLSSVMAC--SGLQALCEGRQ 278
           +WT ++SG V + + +E  ++F  M         P   T+ S + AC  +G   L    Q
Sbjct: 124 SWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQ 183

Query: 279 IHGILWKLALQSDLCIESALMDMYSKC--GSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +HG++ K    S+  + +AL+ MY  C  G    A Q+F+     D ++   ++  +A+ 
Sbjct: 184 VHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKK 243

Query: 337 GFEEEAMQLFVKMV--KAGIEIDPNMVSAVLGVFGVDTSL-----GLGKQIHSLIIKSDF 389
           G+      LF+ M+   + IE+ PN      G     TSL     G+  Q+ + ++KS  
Sbjct: 244 GYVVSTFTLFMAMLHDDSAIELRPN--EHTFGSLITATSLSSCSSGVLDQVFARVLKSGS 301

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           +S+ +V + L++ +++ G L+++  +F  +  RN+V+ N +I    +     +A+ ++  
Sbjct: 302 SSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMG 361

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGL----VNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            +   V  TD TF+ LL A +   +    + +G E    +     I  +      +V+M 
Sbjct: 362 TRDSFVVNTD-TFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMY 420

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            + G  I+  S + R+    D + W  ++     +G  E G      +      SP+ + 
Sbjct: 421 AKCG-AIDKASRVFRLLCARDRVSWNTIISVLDQNGFCE-GAMMNYCMMRQGCISPSNFA 478

Query: 566 LMANIYSCS 574
            ++ + SC+
Sbjct: 479 AISGLSSCA 487


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 176/452 (38%), Positives = 272/452 (60%), Gaps = 42/452 (9%)

Query: 201 YFKC---GSSSSGRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKMHLGLINPN 256
           Y KC   GS    RKVF +M   NV++WTA+I+  VQ+ +  +E ++LF KM    +N  
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN-- 59

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
                                               C+ ++L+ MY++ G +EDA + F+
Sbjct: 60  ------------------------------------CVGNSLISMYARSGRMEDARKAFD 83

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              E + VS   I+ G+A+N   EEA  LF ++   GI I     +++L       ++G 
Sbjct: 84  ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 143

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+QIH  ++K  + SN  + N LI+MYS+CG++E + +VF+ M  RN +SW SMI  FA+
Sbjct: 144 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 203

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           HG   +ALE++ +M   G +P ++T++++L ACSHVG++++G +   SM + H I PR E
Sbjct: 204 HGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRME 263

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HYAC+VD++GR+GLL+EA  FI  MP+  D LVW+ LLGAC +HG++E+G++AAE +   
Sbjct: 264 HYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQ 323

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +PD PA YIL++N+++ +G+WK+  K  K MKE  + KE G SWIE+E +VH F V +  
Sbjct: 324 EPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETS 383

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           HPQA  I+  L +L   + + GY+P+  F+LH
Sbjct: 384 HPQAWQIYQELDQLASKIKEMGYIPDTDFVLH 415



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 194/400 (48%), Gaps = 56/400 (14%)

Query: 99  YLKC---DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           Y KC     + ++ K+F+ MP  + +SW  +++ ++++GE                    
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGE-------------------- 41

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
                     CD+  + L  KMI   V          VGN+LI+ Y + G     RK F 
Sbjct: 42  ----------CDKEAIELFCKMISASVN--------CVGNSLISMYARSGRMEDARKAFD 83

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            +  +N++++ A++ G  +N   EE   LF ++    I  ++ T+ S +   + + A+ +
Sbjct: 84  ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 143

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G QIHG L K   +S+ CI +AL+ MYS+CG++E A+Q+F   E+ + +S T ++ GFA+
Sbjct: 144 GEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAK 203

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----GKQIHSLIIKSDFTS 391
           +GF   A+++F KM++ G +  PN ++ V  V    + +G+     K  +S+  +     
Sbjct: 204 HGFATRALEMFHKMLETGTK--PNEITYV-AVLSACSHVGMISEGQKHFNSMYKEHGIVP 260

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN---GFKALELY 447
                  ++++  + G L ++++  + M    +++ W +++ A   HGN   G  A E+ 
Sbjct: 261 RMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 320

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            E   E  +P     LS LHA +  G     ++  KSM E
Sbjct: 321 LEQ--EPDDPAAYILLSNLHASA--GQWKDVVKIRKSMKE 356



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 35/333 (10%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+S Y +  +M +A K FD +  ++ VS+N +V G+ +N + +  F  F    + G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +   +F  +LS           + IH  +   GY+    + NALI+ Y +CG+  + 
Sbjct: 121 I-GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF EM  RNVI+WT++I+G  ++      L++F KM      PN +TY++ + ACS +
Sbjct: 180 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 239

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             + EG++                      MY + G V            ++  +  V L
Sbjct: 240 GMISEGQK------------------HFNSMYKEHGIV----------PRMEHYACMVDL 271

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +G  ++G   EAM+    M    +  D  +   +LG   V  +  LG+    +I++ +  
Sbjct: 272 LG--RSGLLVEAMEFINSM---PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQE-P 325

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            +P     L N+++  G  +D +K+   M  RN
Sbjct: 326 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERN 358



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 13/129 (10%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LLS +A  G    G  +H   +K              +   I N+L+S Y +C  +  
Sbjct: 129 ASLLSGAASIGAMGKGEQIHGRLLKG----------GYKSNQCICNALISMYSRCGNIEA 178

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++F++M  R+ +SW +M++GF ++G        F + LE G  + ++ ++  +LSAC 
Sbjct: 179 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG-TKPNEITYVAVLSAC- 236

Query: 168 RSELSLVSK 176
            S + ++S+
Sbjct: 237 -SHVGMISE 244


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 182/562 (32%), Positives = 316/562 (56%), Gaps = 8/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFFKRSLE 148
           ++ NSLL+ Y KC  + +A +LF+ M  R +VS WN M++ + ++G F+     ++  ++
Sbjct: 158 ILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYE-DMD 216

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +   +    +FT +LSAC    L    + IH L+   G E ++++ NAL+T Y +C    
Sbjct: 217 V---EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLD 273

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              K+F  +  R+V++W+A+I+   +  L++E ++ + KM L  + PN  T+ S ++AC+
Sbjct: 274 DAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 333

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +  L  GR +H  +     +  L   +AL+D+Y+  GS+++A  +F+  E  D    TV
Sbjct: 334 SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTV 393

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIK 386
           ++ G+++ G     ++L+ +M K   ++    +  S V+       +    +Q HS I  
Sbjct: 394 LIGGYSKQGHRTGVLELYREM-KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA 452

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               S+  +   L+NMYS+ G+LE + +VF +M+ R++++W ++IA +A+HG    AL L
Sbjct: 453 DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGL 512

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           Y+EM+LEG EP+++TF+ +L+ACSH GL  +G +   S+   + + P   HY+C++D++ 
Sbjct: 513 YKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLS 572

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L +A   I  MPV+P+ + W +LLGA  IH D +   +AA ++    P  PA Y+L
Sbjct: 573 RAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVL 632

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+++ +G     A     M   GV K  G SWIE+  Q+H F V D  HP+   I   
Sbjct: 633 LSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAE 692

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  L   + + GYVP    +LH
Sbjct: 693 LQRLSPKIKEAGYVPESEEVLH 714



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/487 (26%), Positives = 242/487 (49%), Gaps = 17/487 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N ++  Y KC  + +A   FD +  ++  SW +M++ + +NG +      +KR ++L   
Sbjct: 62  NEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKR-MDL--- 117

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVY-LCGYEEEVTVGNALITSYFKCGSSSSGR 211
           Q +   +T +L AC   E     K IH  +    G + +V + N+L+T Y KCGS    +
Sbjct: 118 QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAK 177

Query: 212 KVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           ++F  M   R+V +W A+I+   Q+  +EE ++L+  M    + P+  T+ S + ACS L
Sbjct: 178 RLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNL 234

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +GR+IH ++     + DL +++AL+ MY++C  ++DA +IF+     D VS + ++
Sbjct: 235 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 294

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             FA+    +EA++ + KM   G+  +    ++VL        L  G+ +H  I+ + + 
Sbjct: 295 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYK 354

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                   L+++Y+  G L+++  +F ++  R+   W  +I  +++ G+    LELY EM
Sbjct: 355 ITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM 414

Query: 451 K-LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           K    V  T + +  ++ AC+ +G      +    +     IS        +V+M  R G
Sbjct: 415 KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFV-LATSLVNMYSRWG 473

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS--EMGKYAAEKLFLAQPDSPAPYILM 567
            L  AR   ++M  + D L W  L+   + HG+    +G Y   +L  A+   P+    M
Sbjct: 474 NLESARQVFDKMSSR-DTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAE---PSELTFM 529

Query: 568 ANIYSCS 574
             +Y+CS
Sbjct: 530 VVLYACS 536



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/360 (33%), Positives = 202/360 (56%), Gaps = 24/360 (6%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GN ++ +Y KCGS +S R  F  +  +N  +W ++++   QN  Y   L L+ +M L
Sbjct: 58  VFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDL 117

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVE 309
               PN + Y + + AC+ ++AL EG+ IH  I     L+ D+ +E++L+ MY+KCGS+E
Sbjct: 118 ---QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLE 174

Query: 310 DAWQIFEFAEELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
           DA ++FE       VS    ++  +AQ+G  EEA++L+  M     +++P+ V     V 
Sbjct: 175 DAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM-----DVEPS-VRTFTSVL 228

Query: 369 GVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
              ++LGL   G++IH+LI       +  + N L+ MY++C  L+D+ K+F R+  R+ V
Sbjct: 229 SACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVV 288

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM----EF 481
           SW++MIAAFA      +A+E Y +M+LEGV P   TF S+L AC+ VG +  G     + 
Sbjct: 289 SWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQI 348

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           L +  ++  ++  A     +VD+    G L EARS  +++  + + L W  L+G  S  G
Sbjct: 349 LGNGYKITLVNGTA-----LVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGGYSKQG 402



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 154/285 (54%), Gaps = 26/285 (9%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y  ++  C  L+++   RQIH  +   A  +++ + + ++  Y KCGSV  A   F+   
Sbjct: 30  YRDALRQCQDLESV---RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIA 85

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             +  S   +L  +AQNG    A+ L+ +M    ++ +P + + VLG      +L  GK 
Sbjct: 86  RKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKA 142

Query: 380 IHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARH 437
           IHS I  +     +  + N L+ MY+KCG LED+ ++F RM+ R SV SWN+MIAA+A+ 
Sbjct: 143 IHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQS 202

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAE 496
           G+  +A+ LYE+M    VEP+  TF S+L ACS++GL+++G        ++H  IS R  
Sbjct: 203 GHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQG-------RKIHALISSRGT 252

Query: 497 H-----YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                    ++ M  R   L +A    +R+P + DV+ W A++ A
Sbjct: 253 ELDLSLQNALLTMYARCKCLDDAAKIFQRLP-RRDVVSWSAMIAA 296



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +QIH  I     ++N F+ N ++  Y KCG +  +   F  +A +N  SW SM+ A+A++
Sbjct: 44  RQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQN 102

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G+   AL+LY+ M L   +P  V + ++L AC+ +  + +G      ++    +      
Sbjct: 103 GHYRAALDLYKRMDL---QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVIL 159

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
              ++ M  + G L +A+   ERM  +  V  W A++ A +  G  E     A +L+   
Sbjct: 160 ENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFE----EAIRLYEDM 215

Query: 558 PDSPAPYILMANIYSCS 574
              P+     + + +CS
Sbjct: 216 DVEPSVRTFTSVLSACS 232


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 324/634 (51%), Gaps = 47/634 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+  AK G         A   + F+   + N++         N+LLS       + 
Sbjct: 51  LNHLLTAYAKSGRL-------ARARRVFDEMPDPNLFTR-------NALLSALAHSRLVP 96

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSA 165
           +  +LF  MP RD VS+N +++GF   G        ++  L     +  + + + +I+ A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--- 222
              S+ +L    +HC V   G+     VG+ L+  Y K G     R+VF EM  + V   
Sbjct: 157 SALSDRAL-GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 223 ----------------------------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
                                       ITWT +++GL QN L  E L +F +M    + 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            +  T+ S + AC  L AL EG+QIH  + +   + ++ + SAL+DMYSKC S+  A  +
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      + +S T ++VG+ QN   EEA++ F +M   GI+ D   + +V+       SL
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G Q H L + S       V+N L+ +Y KCG +ED+ ++F  M+  + VSW +++  +
Sbjct: 396 EEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGY 455

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G   + ++L+E+M   G++P  VTF+ +L ACS  GLV KG ++  SM + H I P 
Sbjct: 456 AQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPI 515

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HY C++D+  R+G   EA  FI++MP  PD   W  LL +C + G+ E+GK+AAE L 
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P +PA Y+L+ ++++  G+W E A   + M++  V KE G SWI+ + +VH F  DD
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP +  I+  L  L   M +EGY P+   +LH
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLH 669


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 304/558 (54%), Gaps = 2/558 (0%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            + N L++ Y+K   +  A  +F  M   D +SWNTM+SG   +G  +   G F   L   
Sbjct: 972  VGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDS 1031

Query: 151  FYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                DQ +   +L AC   E    ++  IH      G   +  V  ALI  Y K G    
Sbjct: 1032 LLP-DQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEE 1090

Query: 210  GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               +F      ++ +W A++ G + +  + + L+L++ M       + +T +++  A  G
Sbjct: 1091 AEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGG 1150

Query: 270  LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            L  L +G+QIH ++ K     DL + S ++DMY KCG +E A ++F      D V+ T +
Sbjct: 1151 LVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTM 1210

Query: 330  LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
            + G  +NG EE A+  + +M  + ++ D    + ++    + T+L  G+QIH+ I+K + 
Sbjct: 1211 ISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC 1270

Query: 390  TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
              +PFV   L++MY+KCG++ED+  +F R   R   SWN+MI   A+HGN  +AL+ ++ 
Sbjct: 1271 AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKY 1330

Query: 450  MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
            MK  GV P  VTF+ +L ACSH GLV++  E   SM + + I P  EHY+C+VD + RAG
Sbjct: 1331 MKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAG 1390

Query: 510  LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
             + EA   I  MP +    +++ LL AC +  D E GK  AEKL   +P   A Y+L++N
Sbjct: 1391 RIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSN 1450

Query: 570  IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
            +Y+ + +W+  A A   M+++ V K+ G SW++++ +VH FV  D+ H + D I+  +  
Sbjct: 1451 VYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEY 1510

Query: 630  LLRLMIDEGYVPNKRFIL 647
            +++ + +EGYVP+  F L
Sbjct: 1511 IMKRIREEGYVPDTDFAL 1528



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 127/496 (25%), Positives = 220/496 (44%), Gaps = 54/496 (10%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSL 147
            +  +L++ Y K   +R A  LFD M +RD V WN M+  ++      E  + F  F R+ 
Sbjct: 797  VAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRT- 855

Query: 148  ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
              GF               D   L  +S+++ C   +     E+    A  T  F     
Sbjct: 856  --GFRP-------------DDVTLRTLSRVVKCKKNIL----ELKQFKAYATKLFMYDDD 896

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             S           +VI W   +S  +Q     E +  FV M    +  + LT++  +   
Sbjct: 897  GS-----------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVV 945

Query: 268  SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            +GL  L  G+QIHGI+ +  L   + + + L++MY K GSV  A  +F    E+D +S  
Sbjct: 946  AGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWN 1005

Query: 328  VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIK 386
             ++ G   +G EE ++ +FV +++  +  D   V++VL     ++    L  QIH+  +K
Sbjct: 1006 TMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMK 1065

Query: 387  SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +    + FV+  LI++YSK G +E++  +F      +  SWN+++  +   G+  KAL L
Sbjct: 1066 AGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRL 1125

Query: 447  YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YAC 500
            Y  M+  G     +T   L++A    G    G+  LK   ++H +  +          + 
Sbjct: 1126 YILMQESGERSDQIT---LVNAAKAAG----GLVGLKQGKQIHAVVVKRGFNLDLFVTSG 1178

Query: 501  VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QP 558
            V+DM  + G +  AR     +P  PD + W  ++  C  +G  E   +   ++ L+  QP
Sbjct: 1179 VLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQP 1237

Query: 559  DSPAPYILMANIYSCS 574
            D    Y     + +CS
Sbjct: 1238 DE---YTFATLVKACS 1250



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 137/533 (25%), Positives = 220/533 (41%), Gaps = 71/533 (13%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSL 147
            + N+L++ Y KC  + +A KLFD  P   RD V+WN ++S    + +    GF  F R L
Sbjct: 693  VTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLF-RLL 751

Query: 148  ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                    + +   +   C  S     S+ +H      G + +V V  AL+  Y K G  
Sbjct: 752  RRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLI 811

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY--LSSVM 265
               R +F  M VR+V+ W  ++   V   L  E + LF + H     P+ +T   LS V+
Sbjct: 812  REARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVV 871

Query: 266  ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             C   + + E +Q      KL              MY   GS              D + 
Sbjct: 872  KCK--KNILELKQFKAYATKLF-------------MYDDDGS--------------DVIV 902

Query: 326  MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
                L  F Q G   EA+  FV M+ + +  D      +L V      L LGKQIH +++
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVM 962

Query: 386  KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
            +S       V N LINMY K G +  +  VF +M   + +SWN+MI+     G    ++ 
Sbjct: 963  RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 446  LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------A 499
            ++  +  + + P   T  S+L ACS +    +G  +L   T++H  + +A          
Sbjct: 1023 MFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLA--TQIHACAMKAGVVLDSFVST 1076

Query: 500  CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
             ++D+  + G + EA  F+       D+  W A++    + GD               P 
Sbjct: 1077 ALIDVYSKRGKMEEAE-FLFVNQDGFDLASWNAIMHGYIVSGDF--------------PK 1121

Query: 560  SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
            +   YILM      SG   ++   +   K  G     G+  ++  KQ+H+ VV
Sbjct: 1122 ALRLYILMQE----SGERSDQITLVNAAKAAG-----GLVGLKQGKQIHAVVV 1165



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 170/395 (43%), Gaps = 45/395 (11%)

Query: 159  FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM- 217
            F+I+  A   S+LSL  K  H  +   G+  +  V N LIT Y KCGS SS RK+F    
Sbjct: 660  FSILRQAIAASDLSL-GKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTP 718

Query: 218  -RVRNVITWTAVISGLVQN-QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
               R+++TW A++S L  +     +G  LF  +   +++    T       C    +   
Sbjct: 719  DTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSA 778

Query: 276  GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
               +HG   K+ LQ D+ +  AL+++Y+K G + +A  +F+     D V   V++  +  
Sbjct: 779  SESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVD 838

Query: 336  NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
               E EAM LF +  + G   D   +  +  V     ++   KQ  +   K         
Sbjct: 839  TCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATK--------- 889

Query: 396  NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
                + MY   G               + + WN  ++ F + G  ++A++ + +M    V
Sbjct: 890  ----LFMYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRV 931

Query: 456  EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAG 509
                +TF+ +L        V  G+  L+   ++H I  R+          C+++M  +AG
Sbjct: 932  ACDGLTFVVML-------TVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAG 984

Query: 510  LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             +  ARS   +M  + D++ W  ++  C++ G  E
Sbjct: 985  SVSRARSVFGQMN-EVDLISWNTMISGCTLSGLEE 1018



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 6/225 (2%)

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           L  + HL    P   + L   +A S L     G++ H  +       D  + + L+ MY+
Sbjct: 646 LTPRAHLIHSLPQCFSILRQAIAASDLSL---GKRAHARILTSGHHPDRFVTNNLITMYA 702

Query: 304 KCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGIEIDPNM 360
           KCGS+  A ++F+   +   D V+   IL   A +  +  +   LF  + ++ +    + 
Sbjct: 703 KCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHT 762

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           ++ V  +  +  S    + +H   +K     + FV   L+N+Y+K G + ++  +F  MA
Sbjct: 763 LAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMA 822

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            R+ V WN M+ A+      ++A+ L+ E    G  P DVT  +L
Sbjct: 823 VRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTL 867


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 287/487 (58%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL  C + +L L  K  H  + L G + ++   N LI  Y KCGS    R+VF EM  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  +I  L QN    E L L ++M       +  T  S + AC+   AL E + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K A+  ++ + +AL+D+Y+KCG ++DA  +FE   +   V+ + +  G+ QN   E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF K  + G++ D  ++S+V+       ++  GKQ+++L+ KS F SN FV + LI+
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLID 309

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E+S KVF  +  RN V WN+MI+  +RH    + + L+E+M+  G+ P DVT
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+S+L AC H+GLV KG ++   MT+ H ++P   HY+C+VD + RAG + EA   I ++
Sbjct: 370 FVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C  HG+ E+ + AA+KLF  +P +   Y+L++N+Y+ +G+W E A
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  K +KE  V KE G SWIEI+ +VH F+V ++ HP+   I+  L E++  +   GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 642 NKRFILH 648
             +  LH
Sbjct: 550 ETQHDLH 556



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 205/419 (48%), Gaps = 23/419 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  +L + AK      G + HA  +          +  +    +  N L++ Y KC  + 
Sbjct: 67  VHEILKLCAKRKLLLQGKACHAQIL----------LMGLKTDLLTSNILINMYSKCGSVD 116

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILS 164
            A ++FD+MP R  VSWNTM+    +NGE +         L++       + FTI  +L 
Sbjct: 117 FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL---LQMQREGTPFSEFTISSVLC 173

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC         +++H        +  V V  AL+  Y KCG       VF  M  R+V+T
Sbjct: 174 ACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVT 233

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+++ +G VQN++YE+ L LF K     +  +     S + AC+GL A+ EG+Q++ +L 
Sbjct: 234 WSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLS 293

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K    S++ + S+L+DMY+KCG +E+++++F   E+ + V    ++ G +++    E M 
Sbjct: 294 KSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMI 353

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVNNGLINMY 403
           LF KM + G+  +     +VL   G    +  G++   L+ K      N F  + +++  
Sbjct: 354 LFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTL 413

Query: 404 SKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE--EMKLEGVEPTD 459
           S+ G + ++  + S++    S S W S++A+   HGN    LEL E    KL  +EP +
Sbjct: 414 SRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGN----LELAEVAAKKLFDIEPHN 468


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 318/562 (56%), Gaps = 10/562 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SLL+ Y K   + ++  +F+ M   + VSWN M+SG   NG     F  F R ++ G  
Sbjct: 260 TSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVR-MKNGAC 318

Query: 153 QLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
             +  +   +  A  +  ++++  ++ +C   L G E  V VG ALI  Y KCGS    R
Sbjct: 319 TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASEL-GIEGNVLVGTALIDMYSKCGSLHDAR 377

Query: 212 KVFGEMRVRNVIT--WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            VF    +   +   W A+ISG  Q+   +E L+L+V+M    I  +  TY S   A + 
Sbjct: 378 SVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAA 437

Query: 270 LQALCEGRQIHGILWKLALQSDLCIES---ALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            ++L  GR +HG++ K  L  DL + S   A+ D YSKCG +ED  ++F+  EE D VS 
Sbjct: 438 SKSLQFGRVVHGMVLKCGL--DLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSW 495

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           T ++  ++Q+   EEA+  F  M + G   +    S+VL        L  G+Q+H L+ K
Sbjct: 496 TTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCK 555

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   +   + + LI+MY+KCG + ++ KVF +++  + VSW ++I+ +A+HG    AL+L
Sbjct: 556 AGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQL 615

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M+L G++   VT L +L ACSH G+V +G+ + + M + + + P  EHYAC++D++G
Sbjct: 616 FRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLG 675

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R G L +A  FI +MP++P+ +VWQ LLG C +HG+ E+G+ AA K+   +P+  A Y+L
Sbjct: 676 RVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVL 735

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N Y  +G +++       MK+ GV KE G SWI ++ +VH F   D+ HPQ   I+  
Sbjct: 736 LSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVK 795

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L EL   +   GYVP+ R++L+
Sbjct: 796 LEELREKIKAMGYVPDLRYVLN 817



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 273/538 (50%), Gaps = 27/538 (5%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D+  +L   A++G      ++H   +K+   F+++++       V++N     Y KC + 
Sbjct: 120 DLIDVLRDCAEKGSIREAKAVHGLVLKS--NFEDKDL------MVLFNHAAHVYSKCSEF 171

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           R A  +FD+MP R+  SW  M+ G   +G F  GF FF   L  G    D+ +++ I+ +
Sbjct: 172 RAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILP-DKFAYSAIIQS 230

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C   +   + KM+H  + + G+   + V  +L+  Y K GS      VF  M   N ++W
Sbjct: 231 CIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSW 290

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            A+ISG   N L+ E   LFV+M  G   PN  T +S   A   L  +  G+++     +
Sbjct: 291 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 350

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM--TVILVGFAQNGFEEEAM 343
           L ++ ++ + +AL+DMYSKCGS+ DA  +F+      GV+     ++ G++Q+G  +EA+
Sbjct: 351 LGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEAL 410

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINM 402
           +L+V+M + GI  D     +V        SL  G+ +H +++K         VNN + + 
Sbjct: 411 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 470

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG LED  KVF RM  R+ VSW +++ A+++   G +AL  +  M+ EG  P   TF
Sbjct: 471 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 530

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARS 516
            S+L +C+        + FL+   +VH +  +A  +   C+    +DM  + G + EA  
Sbjct: 531 SSVLISCA-------SLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 583

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             +++   PD++ W A++   + HG  E       ++ L+   + A   L+  +++CS
Sbjct: 584 VFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA-VTLLCVLFACS 639



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 200/424 (47%), Gaps = 23/424 (5%)

Query: 152 YQLDQASFTI-ILSACDRSELSLVSKMIHCLVYLCGYEEE--VTVGNALITSYFKCGSSS 208
           YQ  Q    I +L  C        +K +H LV    +E++  + + N     Y KC    
Sbjct: 113 YQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFR 172

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +   VF EM  RNV +WT +I G  ++ L+ +G K F +M    I P+   Y + + +C 
Sbjct: 173 AACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCI 232

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL +L  G+ +H  +      + + + ++L++MY+K GS+ED++ +F    E + VS   
Sbjct: 233 GLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNA 292

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIK 386
           ++ G   NG   EA  LFV+M        PNM +  +V    G    + +GK++ +   +
Sbjct: 293 MISGCTSNGLHLEAFDLFVRMKNGAC--TPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 350

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFARHGNGFKAL 444
                N  V   LI+MYSKCG L D+  VF        V+  WN+MI+ +++ G   +AL
Sbjct: 351 LGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEAL 410

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACS-----HVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           ELY +M   G+     T+ S+ +A +       G V  GM  LK   ++  +S       
Sbjct: 411 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGM-VLKCGLDLMVVSVN----N 465

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            + D   + G L + R   +RM  + D++ W  L+ A   +  S +G+ A     L + +
Sbjct: 466 AIADAYSKCGFLEDVRKVFDRMEER-DIVSWTTLVTA---YSQSSLGEEALATFCLMREE 521

Query: 560 SPAP 563
             AP
Sbjct: 522 GFAP 525


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 175/544 (32%), Positives = 303/544 (55%), Gaps = 1/544 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N+  + ++LL  Y+K  ++  + K+FD+MP R+ V+W  +++G +R G  + G  +F   
Sbjct: 149 NSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFS-G 207

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +     + D  ++ I L A   S      + IH      G++E   V N+L T Y KCG 
Sbjct: 208 MGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGK 267

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
              G   F +MR  +V++WT +++  +Q    + GL+ F +M    + PN  T+ + +  
Sbjct: 268 LDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISC 327

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+    L  G Q+H  +  +   + L + +++M +YSKCG +    ++F   +  D ++ 
Sbjct: 328 CANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITW 387

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + I+  ++Q G+ EEA +   +M   G + +   +++VL V G    L  GKQ+H+ ++ 
Sbjct: 388 STIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLS 447

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                   V + LI MY+KCG + ++ K+F      + +SW +MI+ +A HG+  +A+EL
Sbjct: 448 VGLEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIEL 507

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E ++  G+ P  VTF+ +L ACSH G+V+ G  +  SM++ + I+P  EHY C++D++ 
Sbjct: 508 FENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLC 567

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L +A + I  MP++ D +VW  LL AC IHGD + G+ AA ++    P+    +I 
Sbjct: 568 RAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHIT 627

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +ANI++  G+WKE A     MK  GV KE G S ++++  V +FV  D+ HPQ + I+ +
Sbjct: 628 LANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSSVKVKDSVFAFVSGDRSHPQGEDIYNI 687

Query: 627 LAEL 630
           L EL
Sbjct: 688 LEEL 691



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 219/456 (48%), Gaps = 10/456 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+ L   +K + +++A  LFD +P RD VSW  ++SG++ + +       F +       
Sbjct: 53  NNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSEL 112

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D    ++ L  C      L    +H      G    V VG+AL+  Y K G      K
Sbjct: 113 RIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCK 172

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  RN +TWTAVI+GLV+    E GL  F  M    +  +S  Y  ++ A +   A
Sbjct: 173 VFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGA 232

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR IH    K     +  + ++L  MY+KCG ++     F     LD VS T I+  
Sbjct: 233 LNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTA 292

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + Q G E+  +Q F +M  + +  +    SAV+        L  G+Q+H+ ++   F + 
Sbjct: 293 YIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNA 352

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ +YSKCG+L    KVF  M  R+ ++W+++IAA+++ G G +A E    M+ 
Sbjct: 353 LSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRS 412

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRA 508
           EG +P +    S+L  C  + ++ +G +        H +S   E  + V    + M  + 
Sbjct: 413 EGPKPNEFALASVLSVCGSMAILEQGKQL-----HAHVLSVGLEQTSMVCSALIIMYAKC 467

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + EA S I     K D++ W A++   + HG S+
Sbjct: 468 GSIAEA-SKIFMDSWKDDIISWTAMISGYAEHGHSQ 502



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 143/332 (43%), Gaps = 14/332 (4%)

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQS------DLCIESALMDMYSKCGSVEDAWQIFE 316
           +V+A +G +     R ++     L L +      DL   +  + +  K   ++DA  +F+
Sbjct: 14  TVLAVAGAKTNDNPRHLYTKPLSLTLNAHFSNKVDLAEANNQLKILVKTNHLKDARDLFD 73

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLG 375
              + D VS T I+ G+  +    EA++LF KM +++ + IDP ++S  L   G+  +  
Sbjct: 74  QLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGLKTCGLGLNYL 133

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G  +H   +K    ++ FV + L++MY K G++  S KVF  M  RN+V+W ++I    
Sbjct: 134 YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAVTWTAVITGLV 193

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           R G     L  +  M    VE     +   L A +  G +N G   + + T        +
Sbjct: 194 RAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRS-IHTQTLKKGFDENS 252

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                +  M  + G L        +M    DV+ W  ++ A    G  + G  A +++  
Sbjct: 253 FVANSLTTMYNKCGKLDYGLHTFRKMRT-LDVVSWTTIVTAYIQMGKEDCGLQAFKRM-R 310

Query: 556 AQPDSPAPYILMANIYSCSG----RWKERAKA 583
           A    P  Y   A I  C+     +W E+  A
Sbjct: 311 ASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 312/545 (57%), Gaps = 6/545 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC ++R+A ++FD MP R+TVSWN +++G++ +G+       F  ++E    
Sbjct: 130 SALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFI-NMETERL 188

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+A+F  +L+A D S   L+ ++ H  +   G    +TV NA IT+Y +CG+ +  R+
Sbjct: 189 VPDEATFAALLTAFDDSNYFLMHQL-HGKIVKYGSALGLTVSNAAITAYSQCGALAESRR 247

Query: 213 VFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +F ++   R++I+W A++     + +  + +  FV+M         +   +S+++     
Sbjct: 248 IFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEH 307

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDGVSMTV 328
              +GR IHG++ K  L+    + +AL+ MY++      +EDA + F+     D VS   
Sbjct: 308 DDHQGRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNS 367

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L G++Q+    +A++ F  M  A I  D    SA L        L LG+QIH  II S 
Sbjct: 368 MLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSG 427

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F SN FV++ LI MYSK G L+D+ K F      +SV WNSMI  +A+HG+      L+ 
Sbjct: 428 FASNNFVSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAHIVHSLFN 487

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM    V    VTF+ L+ +CSH GLV++G E L +M   + I  R EHYAC VD+ GRA
Sbjct: 488 EMVELKVPLDHVTFVGLITSCSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRA 547

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A+  I+ MP +PD +VW  LLGAC IHG+ E+    A  L +++P   + YIL++
Sbjct: 548 GQLEKAKELIDSMPFEPDAMVWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLS 607

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++YS  G W +RA   + MK  G+ K  G SWIE++ +VHSF  +D+ HP+ D I+ +L+
Sbjct: 608 SMYSGLGMWSDRAIVQREMKNRGLSKVPGWSWIEVKNEVHSFNAEDRSHPRMDEIYEMLS 667

Query: 629 ELLRL 633
            LL++
Sbjct: 668 LLLQV 672



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 222/464 (47%), Gaps = 19/464 (4%)

Query: 92  WNSLLSFY-LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           WN LL+ Y L    +  A ++FD++P  D  SWN++++  +  G     +   +     G
Sbjct: 27  WNQLLTAYSLSPLGLAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPAAWCLLRAMHAQG 86

Query: 151 FYQLDQASFTIILSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
                 A+ T  L +  RS  +     +   +  L +  G  + V   +AL+  Y KCG 
Sbjct: 87  V-----AANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGR 141

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               R+VF  M  RN ++W A+I+G V++    + L+LF+ M    + P+  T+ + + A
Sbjct: 142 VRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTA 201

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVS 325
                      Q+HG + K      L + +A +  YS+CG++ ++ +IF +  +  D +S
Sbjct: 202 FDDSNYFLM-HQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLIS 260

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              +L  +  +G + +AM  FV+M++ +G+++D    ++++     +     G+ IH L+
Sbjct: 261 WNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTC-PEHDDHQGRAIHGLV 319

Query: 385 IKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           IK+       V N LI MY++      +ED+ K F  +  +++VSWNSM+  +++H    
Sbjct: 320 IKNGLEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSA 379

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL  +  M+   +   +  F + L +CS + ++  G +   S+      S      + +
Sbjct: 380 DALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVS-SSL 438

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           + M  ++G+L +A+   E    K   + W +++   + HG + +
Sbjct: 439 IFMYSKSGILDDAKKSFEEAD-KGSSVPWNSMIFGYAQHGHAHI 481


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 312/589 (52%), Gaps = 42/589 (7%)

Query: 66  LHASFIKTFEPF----DNQNVYN--VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           LH   +  +  F    D QN+++  +      WN+LLS Y K   ++N    FD MP RD
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +VS+NT ++GF  N         FKR    GF   +    +I+ ++   S+L    K IH
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLR-YGKQIH 178

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             + +  +   V + NAL   Y KCG     R +F  +  +N+++W  +ISG  +N   E
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + + L  +M L    P+ +T +S+++A                                 
Sbjct: 239 KCIGLLHQMRLSGHMPDQVT-MSTIIAA-------------------------------- 265

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
             Y +CG V++A ++F   +E D V  T ++VG+A+NG EE+A+ LF +M+   IE D  
Sbjct: 266 --YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSY 323

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +S+V+       SL  G+ +H   I +   +N  V++ LI+MYSKCG ++D+  VF+ M
Sbjct: 324 TLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN VSWN+MI   A++G+   ALEL+E M  +  +P +VTF+ +L AC H   + +G 
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           E+  S+T  H ++P  +HYAC+V+++GR G + +A + I+ M   PD L+W  LL  CS 
Sbjct: 444 EYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICST 503

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            GD    + AA  LF   P    PYI+++N+Y+  GRWK+ A     MK   V K  G S
Sbjct: 504 KGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI+ +VH F  +D+ HP+++ I+  L  L+  + +EG+ PN   +LH
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLH 612



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 188/396 (47%), Gaps = 50/396 (12%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I  +L+ SA+      G  +H S I          V N      IWN+L   Y KC ++ 
Sbjct: 158 IVSILNASAQLSDLRYGKQIHGSII----------VRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A  LFD +  ++ VSWN M+SG+ +NG+ +   G   + + L  +  DQ + + I++A 
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ-MRLSGHMPDQVTMSTIIAA- 265

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                                             Y +CG     R+VF E + ++++ WT
Sbjct: 266 ----------------------------------YCQCGRVDEARRVFSEFKEKDIVCWT 291

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A++ G  +N   E+ L LF +M L  I P+S T  S V +C+ L +L  G+ +HG     
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L ++L + SAL+DMYSKCG ++DA  +F      + VS   ++VG AQNG +++A++LF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYS 404
             M++   + D      +L        +  G++    I      + P +++   ++N+  
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMT-PTLDHYACMVNLLG 470

Query: 405 KCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           + G +E ++ +   MA   + + W+++++  +  G+
Sbjct: 471 RTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 333/616 (54%), Gaps = 64/616 (10%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGE--------FDMG 139
           I NS+++ Y +C  + +A ++FD++  R   D VSWN++++ +++ G+        F MG
Sbjct: 164 ICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMG 223

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
             +   SL+L   + D  +   IL AC         K +H      G  ++V VGNAL++
Sbjct: 224 NHY---SLKL---RPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVS 277

Query: 200 SYFKCGSSSSGRKVFGEMRVRNV-----------------------------------IT 224
            Y KC   +   KVF  ++ ++V                                   IT
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+AVI+G  Q     E L +F +M L  + PN +T  S +  C+ + AL  G+Q H  + 
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 285 KLAL-------QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG--VSMTVILVGFAQ 335
           K  L       + DL + + L+DMY+KC S   A  IF+  E  D   V+ TV++ G+AQ
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           +G   +A++LF ++ K    + PN   +S  L        L LG+Q+H+  ++++  S  
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEV 517

Query: 394 -FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V N LI+MYSK GD++ +  VF  M  RN VSW S++  +  HG G +AL L+++M+ 
Sbjct: 518 LYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G     +TFL +L+ACSH G+V++GM +   M +   I+P AEHYAC+VD++GRAG L 
Sbjct: 578 LGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLN 637

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA   I+ M ++P  +VW ALL A  IH + E+G+YAA KL     ++   Y L++N+Y+
Sbjct: 638 EAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYA 697

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            + RWK+ A+    MK  G+ K  G SWI+ +K   +F V D+ HP+++ I+ +L +L++
Sbjct: 698 NARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIK 757

Query: 633 LMIDEGYVPNKRFILH 648
            + D GYVP   F LH
Sbjct: 758 RIKDMGYVPQTSFALH 773



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 243/507 (47%), Gaps = 70/507 (13%)

Query: 99  YLKCDQMRNAVKLFDDM-PMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           Y++C     AV L   + P   TV W N ++   ++ G  D   GF+ +   LG+   D 
Sbjct: 69  YIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP-DH 127

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +F  +L AC           +H +V   G    V + N+++  Y +CG+     ++F E
Sbjct: 128 YTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDE 187

Query: 217 M---RVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGL-INPNSLTYLSSVMACSGL 270
           +   ++ ++++W ++++  VQ       L++  +M  H  L + P+++T ++ + AC+ +
Sbjct: 188 VLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASV 247

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+Q+HG   +  L  D+ + +AL+ MY+KC  + +A ++FE  ++ D VS   ++
Sbjct: 248 FALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMV 307

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG-------------------VFGVD 371
            G++Q G  + A+ LF  M +  I++D    SAV+                    ++G++
Sbjct: 308 TGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLE 367

Query: 372 T----------------SLGLGKQIHSLIIK-------SDFTSNPFVNNGLINMYSKCGD 408
                            +L  GKQ H+ +IK       +D   +  V NGLI+MY+KC  
Sbjct: 368 PNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKS 427

Query: 409 LEDSIKVFSRM--APRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTDVTFLS 464
              +  +F  +    +N V+W  MI  +A+HG    AL+L+ ++  +   ++P   T   
Sbjct: 428 YRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSC 487

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSF 517
            L AC+ +G +  G        ++H  + R E+ +       C++DM  ++G +  AR+ 
Sbjct: 488 ALMACARLGELRLG-------RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAV 540

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
            + M ++ +V+ W +L+    +HG  E
Sbjct: 541 FDNMKLR-NVVSWTSLMTGYGMHGRGE 566



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 215/456 (47%), Gaps = 64/456 (14%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGL 232
           +K+ H  +++ G+ E  +     + +Y +CG+S+    +   +      V  W A+I   
Sbjct: 46  AKLAHQQIFVHGFTEMFSYA---VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRS 102

Query: 233 VQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
           V+  L ++ L  + +M  LG + P+  T+   + AC  + +L  G  +H I+    L S+
Sbjct: 103 VKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSN 161

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + I ++++ MY +CG+++DA Q+F+   E    D VS   IL  + Q G    A+++  +
Sbjct: 162 VFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFR 221

Query: 349 MVKA-GIEIDP------NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           M     +++ P      N++ A   VF    +L  GKQ+H   +++    + FV N L++
Sbjct: 222 MGNHYSLKLRPDAITLVNILPACASVF----ALQHGKQVHGFSVRNGLVDDVFVGNALVS 277

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSM------------------------------- 430
           MY+KC  + ++ KVF  +  ++ VSWN+M                               
Sbjct: 278 MYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVIT 337

Query: 431 ----IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FL 482
               IA +A+ G+GF+AL+++ +M+L G+EP  VT  SLL  C+ VG +  G +     +
Sbjct: 338 WSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVI 397

Query: 483 KSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSI 539
           K++  ++      +      ++DM  +      ARS  + +  K  +V+ W  ++G  + 
Sbjct: 398 KNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQ 457

Query: 540 HGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCS 574
           HG++        ++F  +    P  + L   + +C+
Sbjct: 458 HGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACA 493



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 131/281 (46%), Gaps = 12/281 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V ++ LLS  A  G    G   HA  IK      N N  +  +  ++ N L+  Y KC
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNIL---NLNWNDKEDDLLVLNGLIDMYAKC 425

Query: 103 DQMRNAVKLFDDMPMRD--TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
              R A  +FD +  +D   V+W  M+ G+ ++GE +     F +  +     L   +FT
Sbjct: 426 KSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQK-TSLKPNAFT 484

Query: 161 I--ILSACDR-SELSLVSKMIHCLVYLCGYEEEVT-VGNALITSYFKCGSSSSGRKVFGE 216
           +   L AC R  EL L  + +H        E EV  VGN LI  Y K G   + R VF  
Sbjct: 485 LSCALMACARLGELRL-GRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDN 543

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M++RNV++WT++++G   +   EE L LF +M       + +T+L  + ACS    + +G
Sbjct: 544 MKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQG 603

Query: 277 R-QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
               H ++    +       + ++D+  + G + +A ++ +
Sbjct: 604 MIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIK 644


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 179/554 (32%), Positives = 310/554 (55%), Gaps = 2/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + N LL  Y +  ++  A  LF+++P +D+V++NT+++G+ ++G +      F +  + 
Sbjct: 185 TVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQS 244

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G +Q    +F+ +L A        + + +H L    G+  + +VGN ++  Y K      
Sbjct: 245 G-HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLE 303

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F EM   + +++  VIS   Q   YE  L  F +M     +  +  + + +   + 
Sbjct: 304 TRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN 363

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L +L  GRQ+H         S L + ++L+DMY+KC   E+A  IF+   +   VS T +
Sbjct: 364 LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTAL 423

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ Q G     ++LF KM  + +  D +  + VL       SL LGKQ+H+ II+S  
Sbjct: 424 ISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGN 483

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N F  +GL++MY+KCG ++D+++VF  M  RN+VSWN++I+A A +G+G  A+  + +
Sbjct: 484 LENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAK 543

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G++P  V+ L +L ACSH G V +G E+ ++M+ ++ I+P+ +HYAC++D++GR G
Sbjct: 544 MIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNG 603

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMA 568
              EA   ++ MP +PD ++W ++L AC IH +  + + AAEKLF + +    A Y+ M+
Sbjct: 604 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMS 663

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G W++     K M+E G+ K    SW+E+  ++H F  +D+ HP  D I   + 
Sbjct: 664 NIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKIN 723

Query: 629 ELLRLMIDEGYVPN 642
           EL   +  EGY P+
Sbjct: 724 ELTAEIEREGYKPD 737



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 228/483 (47%), Gaps = 19/483 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV  N+++S ++K   + +A  LFD MP R  V+W  ++  + RN  FD  F  F++   
Sbjct: 79  TVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCR 138

Query: 149 LGFYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE--VTVGNALITSYFKCG 205
                L D  +FT +L  C+ +        +H      G++    +TV N L+ SY +  
Sbjct: 139 SSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVR 198

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                  +F E+  ++ +T+  +I+G  ++ LY E + LF+KM      P+  T+   + 
Sbjct: 199 RLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLK 258

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A  GL     G+Q+H +        D  + + ++D YSK   V +   +F+   ELD VS
Sbjct: 259 AVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVS 318

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             V++  ++Q    E ++  F +M   G +      + +L +    +SL +G+Q+H   +
Sbjct: 319 YNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL 378

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
            +   S   V N L++MY+KC   E++  +F  +  R +VSW ++I+ + + G     L+
Sbjct: 379 LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLK 438

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV---- 501
           L+ +M+   +     TF ++L A +    +  G        ++H    R+ +   V    
Sbjct: 439 LFTKMRGSNLRADQSTFATVLKASASFASLLLG-------KQLHAFIIRSGNLENVFSGS 491

Query: 502 --VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--Q 557
             VDM  + G + +A    E MP + + + W AL+ A + +GD E    A  K+  +  Q
Sbjct: 492 GLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQ 550

Query: 558 PDS 560
           PDS
Sbjct: 551 PDS 553


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 318/589 (53%), Gaps = 18/589 (3%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   IKT    D           V+ +SL+  Y KC+    A+ LF++MP +D  
Sbjct: 124 LGKMIHTCLIKTGLMMD----------IVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVA 173

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM-IHC 180
            WNT++S + ++G F     +F      GF + +  + T  +S+C R  L L   M IH 
Sbjct: 174 CWNTVISCYYQSGNFKDALEYFGLMRRFGF-EPNSVTITTAISSCARL-LDLNRGMEIHE 231

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
            +   G+  +  + +AL+  Y KCG      ++F +M  + V+ W ++ISG         
Sbjct: 232 ELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIIS 291

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            ++LF +M+   + P   T  S +M CS    L EG+ +HG   +  +Q D+ + S+LMD
Sbjct: 292 CIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMD 351

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           +Y KCG VE A +IF+   +   VS  V++ G+   G   EA+ LF +M K+ +E D   
Sbjct: 352 LYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAIT 411

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            ++VL       +L  GK+IH+LII+    +N  V   L++MY+KCG ++++  VF  + 
Sbjct: 412 FTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP 471

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ VSW SMI A+  HG+ + ALEL+ EM    V+P  V FL++L AC H GLV++G  
Sbjct: 472 KRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCY 531

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALLGACSI 539
           +   M  V+ I PR EHY+C++D++GRAG L EA   +++ P ++ DV +   L  AC +
Sbjct: 532 YFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRL 591

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           H + ++G   A  L    PD  + YIL++N+Y+ + +W E      +MKE+G+ K  G S
Sbjct: 592 HRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCS 651

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI +++  F V+D  H   + +   L+ L   M DE    +K F  H
Sbjct: 652 WIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE----SKSFTYH 696



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 237/471 (50%), Gaps = 7/471 (1%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFF 143
           + N   +  +L++ YL C    +A  +FD+M     +S WN +++G+ +N  +      F
Sbjct: 34  LQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELF 93

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           ++ L   + + D  ++  +  AC      ++ KMIH  +   G   ++ VG++L+  Y K
Sbjct: 94  EKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGK 153

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           C +      +F EM  ++V  W  VIS   Q+  +++ L+ F  M      PNS+T  ++
Sbjct: 154 CNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTA 213

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + +C+ L  L  G +IH  L       D  I SAL+DMY KCG +E A +IFE   +   
Sbjct: 214 ISSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTV 273

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V+   ++ G+   G     +QLF +M   G++     +S+++ V      L  GK +H  
Sbjct: 274 VAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I++    + FVN+ L+++Y KCG +E + K+F  +     VSWN MI+ +   G  F+A
Sbjct: 334 TIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEA 393

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L L+ EM+   VE   +TF S+L ACS +  + KG E    + E  ++         ++D
Sbjct: 394 LGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIE-KKLDNNEVVMGALLD 452

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           M  + G + EA S  + +P K D++ W +++ A   HG +    Y A +LF
Sbjct: 453 MYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAYGSHGHA----YGALELF 498



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 193/387 (49%), Gaps = 8/387 (2%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D      +L AC  S+     K+IH  V   G + ++ +   LI  Y  C      + V
Sbjct: 1   MDTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCV 60

Query: 214 FGEMRVRNVIT-WTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQ 271
           F  M     I+ W  +++G  +N +Y E L+LF K +H   + P+S TY S   AC GL 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLH 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G+ IH  L K  L  D+ + S+L+ MY KC + E A  +F    E D      ++ 
Sbjct: 121 RYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDF 389
            + Q+G  ++A++ F  M + G E  PN V+    +      L L  G +IH  +I S F
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFE--PNSVTITTAISSCARLLDLNRGMEIHEELINSGF 238

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + F+++ L++MY KCG LE +I++F +M  +  V+WNSMI+ +   G+    ++L++ 
Sbjct: 239 LLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKR 298

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EGV+PT  T  SL+  CS    + +G +F+   T  +RI P     + ++D+  + G
Sbjct: 299 MYNEGVKPTLTTLSSLIMVCSRSARLLEG-KFVHGYTIRNRIQPDVFVNSSLMDLYFKCG 357

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGA 536
            +  A    + +P K  V+ W  ++  
Sbjct: 358 KVELAEKIFKLIP-KSKVVSWNVMISG 383



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 141/279 (50%), Gaps = 4/279 (1%)

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC   ++L +G+ IH  +  L LQ+D+ +   L++ Y  C   + A  +F+  E    +S
Sbjct: 12  ACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEIS 71

Query: 326 M-TVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +   ++ G+ +N    EA++LF K++    ++ D     +V    G      LGK IH+ 
Sbjct: 72  LWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTC 131

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IK+    +  V + L+ MY KC   E +I +F+ M  ++   WN++I+ + + GN   A
Sbjct: 132 LIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDA 191

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           LE +  M+  G EP  VT  + + +C+ +  +N+GME  + +     +       A +VD
Sbjct: 192 LEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA-LVD 250

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           M G+ G L  A    E+MP K  V+ W +++    + GD
Sbjct: 251 MYGKCGHLEMAIEIFEQMP-KKTVVAWNSMISGYGLKGD 288


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 209/649 (32%), Positives = 337/649 (51%), Gaps = 92/649 (14%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFG 141
           +P   ++   +L++ Y     ++ + K+F D P  MRD+V +N M++ +  N +      
Sbjct: 74  IPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIE 133

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVS------KMIHCLVYLCGYEEEVTVGN 195
            F   ++   ++ D  +FT +L A     L+LV+      + +HC V   G     +V N
Sbjct: 134 LFC-DMQRDNFRPDNYTFTSVLGA-----LALVAEKEKHCQQLHCAVVKSGTGFVTSVLN 187

Query: 196 ALITSYFKCGSS---------SSGRKVFGEMRVRNVITWTAVISGLVQNQ---------- 236
           ALI+SY KC +S         +  RK+F EM  R+ ++WT +I+G V+N           
Sbjct: 188 ALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN 247

Query: 237 ---------------------LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
                                LY E  ++F KM +  I  +  T+ S +  C+       
Sbjct: 248 GTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRL 307

Query: 276 GRQIHGILWKL----ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           G+++H    K     A    + + +AL+  Y KCG V+ A +IF    E D VS  +IL 
Sbjct: 308 GKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILS 367

Query: 332 GF-------------------------------AQNGFEEEAMQLFVKMVKAGIE-IDPN 359
           G+                               AQ GF EEA++ F +M   G E  D  
Sbjct: 368 GYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYA 427

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
              A++    V  SL  G+Q+H+ +++  + S+    N LI MY++CG ++ +  +F  M
Sbjct: 428 FAGAIISC-SVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINM 486

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
              +++SWN+MIAA  +HG G +A+EL+EEM  EG+ P  ++FL+++ ACSH GLV +G 
Sbjct: 487 PCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGR 546

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           ++  SM  V+ ++P  EHYA ++D++ RAG   EA+  +E MP +P   +W+ALL  C I
Sbjct: 547 KYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRI 606

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+ ++G  AAE+LF  +P     Y+L++N+Y+ +G+W + AK  K M++ GV KE G S
Sbjct: 607 HGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCS 666

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIE+E +VHSF+V D  HP+   I+  L +L+  M   GYVP+ + +LH
Sbjct: 667 WIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLH 715



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 133/496 (26%), Positives = 220/496 (44%), Gaps = 103/496 (20%)

Query: 42  DNYVDISRLLS---ISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           DNY   S L +   ++ KE H      LH + +K+   F           T + N+L+S 
Sbjct: 146 DNYTFTSVLGALALVAEKEKHCQ---QLHCAVVKSGTGF----------VTSVLNALISS 192

Query: 99  YLKCDQ---------MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD------------ 137
           Y+KC           M  A KLFD+MP RD +SW T+++G+++N + D            
Sbjct: 193 YVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKK 252

Query: 138 -------MGFGFFKRSLELGFY-----------QLDQASFTIILSACDRSELSLVSKMIH 179
                  M  G+  R L L  +           QLD+ +FT ++S C  +    + K +H
Sbjct: 253 LGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMH 312

Query: 180 C--LVYLCGYEEEVT--VGNALITSYFKCGSSSSGRKV---------------------- 213
              L  +     +V   V NALIT Y+KCG     +++                      
Sbjct: 313 AYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNV 372

Query: 214 ---------FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                    F EM  +N+++W  +ISGL Q    EE LK F +M L    P    +  ++
Sbjct: 373 RCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAI 432

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           ++CS L +L  GRQ+H  + +   +S L   +AL+ MY++CG V+ A  +F     +D +
Sbjct: 433 ISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAI 492

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++    Q+G   +A++LF +M+K GI   P+ +S  L V    +  GL K+     
Sbjct: 493 SWNAMIAALGQHGQGTQAIELFEEMLKEGIL--PDRIS-FLTVISACSHAGLVKEGRKYF 549

Query: 385 --IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHG 438
             + + +  NP   +   +I++  + G   ++ +V   M   P   + W +++A    HG
Sbjct: 550 DSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPI-WEALLAGCRIHG 608

Query: 439 N---GFKALELYEEMK 451
           N   G +A E   E+K
Sbjct: 609 NIDLGIEAAERLFELK 624



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 28/306 (9%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE--------PFDN--------- 79
           SK+ LD +   + ++S+ A  G F LG  +HA F+KT          P +N         
Sbjct: 283 SKIQLDEFT-FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKC 341

Query: 80  ------QNVYN-VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
                 Q ++N +P   ++ WN +LS Y+    M  A   F++MP ++ +SW  M+SG  
Sbjct: 342 GKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLA 401

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           + G  +    FF R    GF   D A    I+S      L    + +H  V   GYE  +
Sbjct: 402 QIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKH-GRQLHAQVVRYGYESSL 460

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           + GNALIT Y +CG   +   +F  M   + I+W A+I+ L Q+    + ++LF +M   
Sbjct: 461 SAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKE 520

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVED 310
            I P+ +++L+ + ACS    + EGR+    +  +  +  D    + ++D+  + G   +
Sbjct: 521 GILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSE 580

Query: 311 AWQIFE 316
           A ++ E
Sbjct: 581 AKEVME 586



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 129/293 (44%), Gaps = 29/293 (9%)

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A  +   M+ +G +   ++++ ++ ++   + L   + +   I + D  +       LI 
Sbjct: 32  ARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVAR----TTLIA 87

Query: 402 MYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
            YS  GDL+ S K+FS   +  R+SV +N+MI A++ + +G  A+EL+ +M+ +   P +
Sbjct: 88  AYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDN 147

Query: 460 VTFLSLLHACS------------HVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVG 506
            TF S+L A +            H  +V  G  F+ S+      +  + +  C       
Sbjct: 148 YTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLN----ALISSYVKCAASPSAQ 203

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
            + L+ EAR   + MP + D L W  ++     + D +  K   E L          +  
Sbjct: 204 SSSLMAEARKLFDEMPNR-DELSWTTIITGYVKNNDLDAAK---EFLNGTSKKLGVAWNA 259

Query: 567 MANIYSCSGRWKERAKAIKR--MKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           M + Y+  G + E  +  ++  M ++ +D+ T  S I +      F +  +MH
Sbjct: 260 MISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMH 312


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 314/562 (55%), Gaps = 17/562 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  + +   +  A ++FD +  R +V W  +++ +++ G        F   L+ GF +
Sbjct: 185 ALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGF-E 243

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS---G 210
            D  S + ++SAC       + + +H +    G   +  V   L+  Y K     S    
Sbjct: 244 PDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHA 303

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEG-LKLFVKMHLGLINPNSLTYLSSVMACSG 269
           RKVF  M   NV++WTA+ISG VQ+ + E   + LF +M    I PN +TY + + AC+ 
Sbjct: 304 RKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACAN 363

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L     GRQIH  + K ++     + +AL+ MY++ G +E+A + F+   E + +SM+  
Sbjct: 364 LSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMS-- 421

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK 386
                    E E           G++ D         +     S+GL   G+++H+L +K
Sbjct: 422 ------PDVETERNNASCSSKIEGMD-DGVSTFTFASLLSAAASVGLLTKGQKLHALSMK 474

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           + F S+  ++N L++MY++CG LED+ + F  M   N +SW S+I+  A+HG   +AL +
Sbjct: 475 AGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSM 534

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M L GV+P DVT++++L ACSHVGLV +G E  +SM + H + PR EHYAC+VD++ 
Sbjct: 535 FHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLA 594

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+GL+ EAR FI  MP K D LVW+ LL AC  +G++E+G+ AA  +   +P  PAPY+L
Sbjct: 595 RSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVL 654

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+Y+ +G W E A+    M++  + KETG+SW+++   +H F   D  HP A  I+  
Sbjct: 655 LSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAK 714

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  L+R + D GYVP+   +LH
Sbjct: 715 LVTLIREIKDIGYVPDTSIVLH 736



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 156/575 (27%), Positives = 273/575 (47%), Gaps = 50/575 (8%)

Query: 36  TSKLVL--DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           T+ LVL  D+  D ++LL+ +A+ G   LG +LH   +++ E  D           V+ N
Sbjct: 30  TAHLVLSSDHSCDAAKLLTSAARAGDLRLGRALHRRLLRS-EILDTD--------AVVAN 80

Query: 94  SLLSFYLKCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SLL+ Y KC  +  A ++FD M  +RD VSW  M S   RNG         +   E+   
Sbjct: 81  SLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESL---RLLGEMLEL 137

Query: 153 QLDQASFTIILSA--CDRSEL-SLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSS 208
            L   +FT+  +A  C   EL  L   ++   V   G+   +V+VG ALI  + + G   
Sbjct: 138 GLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLV 197

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           + ++VF  +  R  + WT +I+  VQ     + ++LF+ M      P+  +  S + AC+
Sbjct: 198 AAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACT 257

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG---SVEDAWQIFEFAEELDGVS 325
            L ++  G+Q+H +  +L L SD C+   L+DMY+K     S+E A ++F+     + +S
Sbjct: 258 ELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMS 317

Query: 326 MTVILVGFAQNGFEE-EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            T ++ G+ Q+G +E   M LF +M+   I  +    S +L      +    G+QIH+ +
Sbjct: 318 WTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHV 377

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K+       V N L++MY++ G +E++ K F ++   N +S +  +     + +     
Sbjct: 378 LKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASC---- 433

Query: 445 ELYEEMKLEGVEP--TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--- 499
                 K+EG++   +  TF SLL A + VGL+ KG +        H +S +A   +   
Sbjct: 434 ----SSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKL-------HALSMKAGFRSDQG 482

Query: 500 ---CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               +V M  R G L +A    + M    +V+ W +++   + HG ++        + LA
Sbjct: 483 ISNSLVSMYARCGYLEDACRAFDEMK-DHNVISWTSIISGLAKHGYAKQALSMFHDMILA 541

Query: 557 QPDSPAPYILMANIYSCS--GRWKERAKAIKRMKE 589
               P     +A + +CS  G  KE  +  + M++
Sbjct: 542 GV-KPNDVTYIAVLSACSHVGLVKEGKEHFRSMQK 575



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 210/436 (48%), Gaps = 29/436 (6%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           D Y  +S ++S   + G   LG  LH+  ++            + + + +   L+  Y K
Sbjct: 245 DGY-SMSSMISACTELGSVRLGQQLHSVALR----------LGLVSDSCVSCGLVDMYAK 293

Query: 102 CD---QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
                 M +A K+F  MP  + +SW  ++SG++++G  +       R +     + +  +
Sbjct: 294 LKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHIT 353

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           ++ +L AC         + IH  V          VGNAL++ Y + G     RK F ++ 
Sbjct: 354 YSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLY 413

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
             N+++ +  +     N      ++    M  G+   ++ T+ S + A + +  L +G++
Sbjct: 414 ETNILSMSPDVETERNNASCSSKIE---GMDDGV---STFTFASLLSAAASVGLLTKGQK 467

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H +  K   +SD  I ++L+ MY++CG +EDA + F+  ++ + +S T I+ G A++G+
Sbjct: 468 LHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGY 527

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVN 396
            ++A+ +F  M+ AG++  PN V+ +  V    + +GL K+   H   ++ D    P + 
Sbjct: 528 AKQALSMFHDMILAGVK--PNDVTYI-AVLSACSHVGLVKEGKEHFRSMQKDHGLLPRME 584

Query: 397 N--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNG-FKALELYEEMKL 452
           +   ++++ ++ G +E++ +  + M  + +++ W ++++A   +GN     +     + L
Sbjct: 585 HYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINL 644

Query: 453 EGVEPTDVTFLSLLHA 468
           E  +P     LS L+A
Sbjct: 645 EPRDPAPYVLLSNLYA 660


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 330/602 (54%), Gaps = 15/602 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL + + EG+  +G  +H   +K            + +  ++ N+L+  Y KC  +  A 
Sbjct: 319 LLPVCSGEGNVDVGMVIHGMAVKL----------GLVHELMVCNALIDMYSKCGCLSEAA 368

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS-LELGFYQLDQASFTIILSAC-D 167
            LF  +  +  VSWN+M+  + R G     F   ++  +E    ++++ +   +L AC +
Sbjct: 369 ILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLE 428

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            SEL L  + +H       ++ +  + NA I +Y KCGS      VF  M  ++V +W A
Sbjct: 429 ESEL-LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 228 VISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           VI G  QN    + L  + +M  LG++ P+  + +S ++AC  L  L  G++IHG + + 
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRN 546

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L+ +  +  +L+ +Y  C         FE   + + V    +L G++QN    EA+ LF
Sbjct: 547 GLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLF 606

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M+  G+E D   ++++LG     ++LGLGK++H   +K+    + FV   L++MY+K 
Sbjct: 607 RQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKS 666

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G L  S ++F+R+  +   SWN MI  F  HG G KA+EL+E+MK    +P   TFL +L
Sbjct: 667 GFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVL 726

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC H GLV++G+ +L  M  ++++ P  EHYACV+DM+GRAG L EA +FI  MP +PD
Sbjct: 727 QACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPD 786

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
             +W +LL +   + D EMG+  AEKL   + +    YIL++N+Y+ +G+W       ++
Sbjct: 787 AKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQK 846

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           MK++ + K+ G SWIE+  +V+SF+  +  +P +D I  +   L + +++ GY P+   +
Sbjct: 847 MKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCV 906

Query: 647 LH 648
           LH
Sbjct: 907 LH 908



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 260/558 (46%), Gaps = 36/558 (6%)

Query: 1   MKSKWVFLKL-NSNFPFCSSLVSPFITKIIQDPTSST-------SKLVLDNYVDISRLLS 52
           ++S+ VF +L N N    ++LVS ++   + D    T       ++   DN+     L+ 
Sbjct: 160 LESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFT-FPCLIK 218

Query: 53  ISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLF 112
               +   HLG S+H   +K     D            + N++++ Y KC  +  AV+LF
Sbjct: 219 ACTGKCDIHLGKSVHGMAVKMGLIMD----------LFVGNAMIALYGKCGFLDEAVELF 268

Query: 113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-DQASFTIILSACDRSEL 171
           D MP ++ +SWN+++ GF  NG +   +  F+  LE G   + D A+   +L  C     
Sbjct: 269 DKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGN 328

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V  +IH +    G   E+ V NALI  Y KCG  S    +F ++  ++V++W ++I  
Sbjct: 329 VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGA 388

Query: 232 LVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
             +     E   L  KM +   L+  N +T L+ + AC     L   R +HG   + + Q
Sbjct: 389 YSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQ 448

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
               I +A +  Y+KCGS+  A  +F         S   ++ G AQNG   +A+  + +M
Sbjct: 449 YKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEM 508

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            + GI  D   + ++L   G    L  GK+IH  ++++    N FV   L+++Y  C   
Sbjct: 509 TRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKP 568

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
                 F  M  +NSV WN+M++ ++++    +AL L+ +M  +G+EP ++   S+L AC
Sbjct: 569 FYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGAC 628

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRA-----EHYAC-VVDMVGRAGLLIEARSFIERMPV 523
           S +  +  G        EVH  + +         AC ++DM  ++G L  ++    R+  
Sbjct: 629 SQLSALGLG-------KEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNG 681

Query: 524 KPDVLVWQALLGACSIHG 541
           K +V  W  ++    +HG
Sbjct: 682 K-EVASWNVMITGFGVHG 698



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 226/461 (49%), Gaps = 22/461 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   L++ Y  C     +  +FD +  ++   WN +VSG++RN  +D     F   + +
Sbjct: 144 VLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV 203

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +Q D  +F  ++ AC       + K +H +    G   ++ VGNA+I  Y KCG    
Sbjct: 204 TEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDE 263

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF---VKMHLGLINPNSLTYLSSVMA 266
             ++F +M  +N+I+W ++I G  +N  + E  + F   ++   GLI P+  T ++ +  
Sbjct: 264 AVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI-PDVATMVTLLPV 322

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CSG   +  G  IHG+  KL L  +L + +AL+DMYSKCG + +A  +F   E    VS 
Sbjct: 323 CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382

Query: 327 TVILVGFAQNGFEEEAMQLFVK--MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
             ++  +++ GF  E   L  K  M +  +E++   +  +L     ++ L   + +H   
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYS 442

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           ++  F     +NN  I  Y+KCG L  +  VF  M  ++  SWN++I   A++G+  KAL
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHR---ISPRAEH 497
           + Y EM   G+ P D + +SLL AC  +GL+  G E     L++  E++    +S  + +
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           + C     G        R++ E M  K  V  W A+L   S
Sbjct: 563 FHCSKPFYG--------RTYFETMGDKNSV-CWNAMLSGYS 594



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 220/431 (51%), Gaps = 23/431 (5%)

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGF-YQLDQ--ASFTIILSACDR-SELSLVSKMIHCLV 182
           +S     G+ +    F +R+ +    Y L Q   +  ++L  C +   + +  K+   L 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  +  +   LIT Y  CG     R VF  +  +N+  W A++SG V+N+LY+E +
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 243 KLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
             F+++  +    P++ T+   + AC+G   +  G+ +HG+  K+ L  DL + +A++ +
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIAL 254

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG +++A ++F+   E + +S   ++ GF++NGF  EA + F  ++++G  + P++ 
Sbjct: 255 YGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVA 314

Query: 362 SAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           + V  L V   + ++ +G  IH + +K        V N LI+MYSKCG L ++  +F ++
Sbjct: 315 TMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPTDVTFLSLLHACSHVGLVNK 477
             ++ VSWNSMI A++R G  F+  +L  +M +E   +E  +VT L+LL AC        
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES---- 430

Query: 478 GMEFLKSMTEVHRISPRAE-HYACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             E L S+  +H  S R    Y  +++        + G L+ A      M  K  V  W 
Sbjct: 431 --ELL-SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK-SVSSWN 486

Query: 532 ALLGACSIHGD 542
           A++G  + +GD
Sbjct: 487 AVIGGHAQNGD 497


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/604 (33%), Positives = 327/604 (54%), Gaps = 13/604 (2%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S ++ D YV +S +L+  +  G+   G  +HA  +++    D  + YNV         L+
Sbjct: 237 SNVIPDKYV-LSSILNACSVLGYLKGGKQIHAYVLRSETKMD-VSTYNV---------LI 285

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
            FY KC +++    LFD + +++ +SW TM++G+++N               +G ++ D+
Sbjct: 286 DFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMG-WKPDE 344

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            + + +L++C   +     + IH  V     E +  V NALI  Y KC +    ++VF  
Sbjct: 345 YACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDV 404

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +   +V+ + A+I G  +       L++F +M L  ++P+ LT++S +   + L  L   
Sbjct: 405 VTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLS 464

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +QIHG++ K     D    SAL+D+YSKC  + DA  +FE     D V    +  G+   
Sbjct: 465 KQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQ 524

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
              EEA +L+  +  +    +    +A+     +  SL  G+Q H+ ++K    S+PF+ 
Sbjct: 525 LKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFIT 584

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L++MY+KCG +E++ K+FS    +++  WNSMI+ +A+HG   +AL ++E M    + 
Sbjct: 585 NALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNIN 644

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P  VTF+S+L ACSHVG V  G++   SM   + I P  EHYA VV ++GRAG L EAR 
Sbjct: 645 PNYVTFVSVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEARE 703

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FIE+M ++P  LVW++LL AC + G+ E+ K+AAE      P     Y++++NI++  G 
Sbjct: 704 FIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGM 763

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W +  +   +M   GV KE G SWIE+  +VH FV  DK+H + D I+  L EL   M D
Sbjct: 764 WGDVKRLRLKMDVNGVVKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYLALDELTTQMKD 823

Query: 637 EGYV 640
            G V
Sbjct: 824 VGCV 827



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/452 (30%), Positives = 235/452 (51%), Gaps = 2/452 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL  Y K   + +A  LFD MP R+ VSW+++VS + + G  +    +F         
Sbjct: 79  NLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLEFQRTCVD 138

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +L++     I+ AC + +       +H  V   G+ E+V VG +L+  Y K G     R 
Sbjct: 139 KLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARL 198

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + ++  +TWTA+I+G  ++   E  L+LF  M    + P+     S + ACS L  
Sbjct: 199 VFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILNACSVLGY 258

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+QIH  + +   + D+   + L+D Y+KCG V+    +F+  +  + +S T ++ G
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + QN ++ EA++L  +M + G + D    S+VL   G   +L  G+QIHS +IK     +
Sbjct: 319 YMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHD 378

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV N LI+MYSKC  L+D+ +VF  +   + V +N+MI  ++R G    ALE+++EM+L
Sbjct: 379 NFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRL 438

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           + V P+ +TF+SLL   + +  +    + +  +   +  S      + ++D+  +   + 
Sbjct: 439 KHVSPSFLTFVSLLGLSAALLCLQLSKQ-IHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +AR   E    K D++VW +L    ++   SE
Sbjct: 498 DARYVFEGTTNK-DIVVWNSLFSGYNLQLKSE 528



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 229/456 (50%), Gaps = 11/456 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SL+  Y K  ++  A  +FD + ++  V+W  +++G+ ++G  ++    F   +E    
Sbjct: 181 TSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVI 240

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+   + IL+AC         K IH  V     + +V+  N LI  Y KCG   +G+ 
Sbjct: 241 P-DKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKA 299

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  + V+N+I+WT +I+G +QN    E ++L  +M      P+     S + +C  + A
Sbjct: 300 LFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDA 359

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQIH  + K+ L+ D  + +AL+DMYSKC +++DA ++F+       V    ++ G
Sbjct: 360 LQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEG 419

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLIIKSDFT 390
           +++ G+   A+++F +M      + P+ ++ V  +      L   L KQIH LIIK  F+
Sbjct: 420 YSRQGYLCGALEVFQEMRLK--HVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFS 477

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F ++ LI++YSKC  + D+  VF     ++ V WNS+ + +       +A +LY ++
Sbjct: 478 LDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDL 537

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRA 508
           +L    P + TF +L  A S +  +  G +F     +V ++   ++ +    +VDM  + 
Sbjct: 538 QLSRERPNEFTFAALTTAASILASLPHGQQF---HNQVMKMGLESDPFITNALVDMYAKC 594

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + EA        V  D   W +++   + HG  E
Sbjct: 595 GSVEEAEKIFSS-SVWKDTACWNSMISMYAQHGKVE 629



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 164/309 (53%), Gaps = 1/309 (0%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           L  + +HC V L G + +V + N L+ SYFK GS      +F +M  RN+++W++V+S  
Sbjct: 57  LYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMY 116

Query: 233 VQNQLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
            Q    E+ L  F++     ++  N     S + AC        G Q+H  + K     D
Sbjct: 117 TQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGED 176

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + ++L+ +Y+K G ++ A  +F+       V+ T I+ G+ ++G  E ++QLF  M++
Sbjct: 177 VYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMME 236

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           + +  D  ++S++L    V   L  GKQIH+ +++S+   +    N LI+ Y+KCG ++ 
Sbjct: 237 SNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKA 296

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
              +F R+  +N +SW +MIA + ++   ++A+EL  EM   G +P +    S+L +C  
Sbjct: 297 GKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGS 356

Query: 472 VGLVNKGME 480
           V  +  G +
Sbjct: 357 VDALQHGRQ 365


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 305/561 (54%), Gaps = 10/561 (1%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y+KC ++  A ++F  M  R+ VSW  ++ GFLR+G+                   ++ 
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GE 216
           + +  L AC     +     IH L    GY+E   V ++L+  Y K G     R+VF G 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQALC 274
                + TW A++SG        + L +F +M  H G   P+  T+ S + ACSGL A  
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 275 EGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           EG Q+H  +     +  S+  +  AL+DMY KC  +  A Q+FE  E  + +  T ++VG
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 240

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ G   EA++LF +  ++G   D +++S+V+GV      +  G+Q+H   IK    ++
Sbjct: 241 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTD 300

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
               N +++MY KCG  +++ ++F  M   N VSW +M+    +HG G +A+ L+EEM+ 
Sbjct: 301 VSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRA 360

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            GVEP +VT+L+LL ACSH GLV++   +   +     + P+AEHYAC+VD++GRAG L 
Sbjct: 361 GGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 420

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EAR  I  MP++P V VWQ LL AC +H D  +G+ A + L     D+P  Y+ ++N+ +
Sbjct: 421 EARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLA 480

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV---VDDKMHPQADTIHGVLAE 629
            +G W+E  K    M+  G+ K+ G SW+E+ K+VH F     +++ HPQA  I  VL +
Sbjct: 481 EAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRD 540

Query: 630 LLRLMIDE-GY-VPNKRFILH 648
           +   M ++ GY   + RF LH
Sbjct: 541 METRMREQLGYNADDARFALH 561



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 106/219 (48%), Gaps = 9/219 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   +  G    G  +HA+   +         ++  +  ++  +L+  Y+KC ++  A+
Sbjct: 169 LLKACSGLGATREGAQVHAAMTASG--------FSTASNAILAGALVDMYVKCRRLPVAM 220

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++F+ +  ++ + W  +V G  + G+       F+R    G  + D    + ++      
Sbjct: 221 QVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSG-ARPDSHVLSSVVGVLADF 279

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            L    + +HC         +V+ GN+++  Y KCG      ++F EMR  NV++WT ++
Sbjct: 280 ALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMV 339

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +GL ++ L  E + LF +M  G + P+ +TYL+ + ACS
Sbjct: 340 NGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 378



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS++  YLKC     A ++F +M   + VSW TMV+G  ++G        F+  +  G  
Sbjct: 305 NSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFE-EMRAGGV 363

Query: 153 QLDQASFTIILSACDRSEL 171
           + D+ ++  +LSAC  + L
Sbjct: 364 EPDEVTYLALLSACSHAGL 382


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 287/487 (58%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL  C + +L L  K  H  + L G + ++   N LI  Y KCGS    R+VF EM  R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  +I  L QN    E L L ++M       +  T  S + AC+   AL E + +H 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K A+  ++ + +AL+D+Y+KCG ++DA  +FE   +   V+ + +  G+ QN   E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF K  + G++ D  ++S+V+       ++  GKQ+++L+ KS F SN FV + LI+
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLID 309

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E+S KVF  +  RN V WN+MI+  +RH    + + L+E+M+  G+ P DVT
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+S+L AC H+GLV KG ++   MT+ H ++P   HY+C+VD + RAG + EA   I ++
Sbjct: 370 FVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C  HG+ E+ + AA+KLF  +P +   Y+L++N+Y+ +G+W E A
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  K +KE  V KE G SWIEI+ +VH F+V ++ HP+   I+  L E++  +   GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 642 NKRFILH 648
             +  LH
Sbjct: 550 ETQHDLH 556



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 208/422 (49%), Gaps = 29/422 (6%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  +L + AK      G + HA  +          +  +    +  N L++ Y KC  + 
Sbjct: 67  VHEILKLCAKRKLLLQGKACHAQIL----------LMGLKTDLLTSNILINMYSKCGSVD 116

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILS 164
            A ++FD+MP R  VSWNTM+    +NGE +         L++       + FTI  +L 
Sbjct: 117 FARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL---LQMQREGTPFSEFTISSVLC 173

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC         +++H        +  V V  AL+  Y KCG       VF  M  R+V+T
Sbjct: 174 ACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVT 233

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+++ +G VQN++YE+ L LF K     +  +     S + AC+GL A+ EG+Q++ +L 
Sbjct: 234 WSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLS 293

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K    S++ + S+L+DMY+KCG +E+++++F   E+ + V    ++ G +++    E M 
Sbjct: 294 KSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMI 353

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKS-DFTSNPFVNNGLI 400
           LF KM + G  + PN V+ V  V      +GL   G++   L+ K      N F  + ++
Sbjct: 354 LFEKMQQMG--LSPNDVTFV-SVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMV 410

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE--EMKLEGVEP 457
           +  S+ G + ++  + S++    S S W S++A+   HGN    LEL E    KL  +EP
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGN----LELAEVAAKKLFDIEP 466

Query: 458 TD 459
            +
Sbjct: 467 HN 468


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/554 (33%), Positives = 310/554 (55%), Gaps = 2/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           +++NSL+  Y K   +  A +LF +MP +D+VS+N M++G+ + G  +     F +   +
Sbjct: 179 IVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNM 238

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            F Q    +F  +L     SE  +  + IH L     Y  ++ V NAL+  Y K      
Sbjct: 239 DF-QPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDL 297

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + +F EM   + +++  +I+G   N  YE+   LF ++     +  +  + + +   + 
Sbjct: 298 AKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAI 357

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  GRQ H         S++ + +AL+DMY+KC   EDA +IF      + V  T I
Sbjct: 358 ELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAI 417

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  + Q GF EEA+++F +M +  +  D    ++ L       S+ LGKQ+HS +I+   
Sbjct: 418 ISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGL 477

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ F  + L++MY+ CG ++D+I+VF  M  RN V WN++I+A++++G+       + +
Sbjct: 478 LSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFAD 537

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G+ P  V+FLS+L ACSH GLV K + +  SMT+V+++ PR +HYA ++D++ R+G
Sbjct: 538 MIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSG 597

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMA 568
              EA + I  MP +PD ++W ++L +C IH + ++ K AA++LF +      A Y+ M+
Sbjct: 598 RFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMS 657

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G+W+  AK  K M+E GV K T  SW+EI+ +VH F  +D+ HPQ + I   + 
Sbjct: 658 NIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKIN 717

Query: 629 ELLRLMIDEGYVPN 642
            L+ LM  EGY P+
Sbjct: 718 SLVELMDKEGYKPD 731



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/452 (28%), Positives = 236/452 (52%), Gaps = 3/452 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N ++S Y+K   +  A +LF+ M  R+ VSW  M+ G+ +N +    F  +      G  
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGV- 139

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +LS  D +        IH  +   G+   + V N+L+ SY K        +
Sbjct: 140 KPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM  ++ +++  +I+G  +    EE LKLF++M      P+  T+ + +    G + 
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSED 259

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+QIHG+  K +   D+ + +AL+D YSK   ++ A  +F+   ELDGVS  +I+ G
Sbjct: 260 VIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITG 319

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A NG  E++  LF ++     +      + +L V  ++ +L +G+Q H+  + +   S 
Sbjct: 320 YAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSE 379

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L++MY+KC   ED+ ++F+ +A RNSV W ++I+ + + G   +AL++++EM  
Sbjct: 380 VQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNR 439

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           E V     TF S L A +++  V+ G +   S+  +  +S      + +VDM    G + 
Sbjct: 440 ENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSG-SVLVDMYANCGSMK 498

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +A    + MP + +++ W AL+ A S +GD+E
Sbjct: 499 DAIEVFKEMPDR-NIVCWNALISAYSQNGDAE 529


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 311/570 (54%), Gaps = 16/570 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + N+LL+ Y KC  + +A ++F  M   R+ +SW+ M      +G        F+  L L
Sbjct: 182 VSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLL 241

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G      A  TI LSAC    L    ++IH  + L G+E E+ V NA++T Y +CG+   
Sbjct: 242 GIKATKSAMVTI-LSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEE 300

Query: 210 GRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            RKVF  M   +R+V++W  ++S  V N   ++ ++L+ +M L     + +TY+S + AC
Sbjct: 301 ARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQL---RADKVTYVSLLSAC 357

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S  + +  GR +H  +    L+ ++ + +AL+ MY+KCGS  +A  +F+  E+   +S T
Sbjct: 358 SSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWT 417

Query: 328 VILVGFAQNGFEEEAMQLFVKMVK-----AGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            I+  + +     EA  LF +M++     +   + P+ ++   +L      ++L  GK +
Sbjct: 418 TIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMV 477

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
                    +S+  V   ++N+Y KCG++E+  ++F  +  R  V  WN+MIA +A+ G 
Sbjct: 478 SEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQ 537

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-EHY 498
             +AL+L+  M++EGV P   +F+S+L ACSH GL ++G  +  SMT  +R   R  +H+
Sbjct: 538 SHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHF 597

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            CV D++GR G L EA  F+E++PVKPD + W +LL AC  H D +  K  A KL   +P
Sbjct: 598 GCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEP 657

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
                Y+ ++NIY+   +W   AK  K M E GV KE G+S IEI K +H F   D  HP
Sbjct: 658 RCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHP 717

Query: 619 QADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +   I   LA+L   M + GYVP+ + +LH
Sbjct: 718 RNREIREELAKLHSQMKECGYVPDTKMVLH 747



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 258/529 (48%), Gaps = 34/529 (6%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           +RLL   A+      G  +H+  +K        N+  +P   ++ N ++S Y  CD   +
Sbjct: 47  ARLLQRCARAQALPEGRKIHSLAVK-------HNL--LPGNLILGNHIVSMYAHCDSPGD 97

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A   FD +  R+  SW  +V+ F  +G+        +R  + G  + D  +F   L +C 
Sbjct: 98  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGV-RPDAVTFITALGSCG 156

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM-RVRNVITWT 226
             E       IH +V     E +  V NAL+  Y KCGS S  ++VF +M R RNVI+W+
Sbjct: 157 DPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWS 216

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +      +    E L+ F  M L  I       ++ + ACS    + +GR IH  +   
Sbjct: 217 IMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALS 276

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFEEEAMQ 344
             +S+L + +A+M MY +CG+VE+A ++F+  +E   D VS  ++L  +  N   ++A+Q
Sbjct: 277 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQ 336

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           L+ +M    +  D     ++L        +GLG+ +H  I+  +   N  V N L++MY+
Sbjct: 337 LYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYA 393

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEG------VEP 457
           KCG   ++  VF +M  R+ +SW ++I+A+ R     +A  L+++M +LE       V+P
Sbjct: 394 KCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKP 453

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             + F+++L+AC+ V  + +G    +        S +A   A VV++ G+ G + E R  
Sbjct: 454 DALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTA-VVNLYGKCGEIEEGRRI 512

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL------AQPDS 560
            + +  +PDV +W A++   +  G S    + A KLF        +PDS
Sbjct: 513 FDGVCSRPDVQLWNAMIAVYAQFGQS----HEALKLFWRMEMEGVRPDS 557



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 215/453 (47%), Gaps = 53/453 (11%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV----YLCGYEEEVTVGNALITSYF 202
           LE    + + A++  +L  C R++     + IH L      L G    + +GN +++ Y 
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPG---NLILGNHIVSMYA 90

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
            C S    +  F  +  RN+ +WT +++    +   +E L+   +M    + P+++T+++
Sbjct: 91  HCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFIT 150

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ +C   ++L +G +IH ++    L+ D  + +AL++MY KCGS+  A ++F   E   
Sbjct: 151 ALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTR 210

Query: 323 GVSMTVILVG-FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            V    I+ G  A +G   EA++ F  M+  GI+   + +  +L        +  G+ IH
Sbjct: 211 NVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIH 270

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGN 439
           S I  S F S   V N ++ MY +CG +E++ KVF  M  A R+ VSWN M++A+  +  
Sbjct: 271 SCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDR 330

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGME-------- 480
           G  A++LY+ M+L       VT++SLL ACS           H  +VN  +E        
Sbjct: 331 GKDAIQLYQRMQLRA---DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA 387

Query: 481 ----FLK--SMTEVHRISPRAEH-----YACVVDMVGRAGLLIEARSFIERM-------- 521
               + K  S TE   +  + E      +  ++    R  L+ EA    ++M        
Sbjct: 388 LVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGS 447

Query: 522 --PVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
              VKPD L +  +L AC+     E GK  +E+
Sbjct: 448 SQRVKPDALAFVTILNACADVSALEQGKMVSEQ 480



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L+S Y KC     A  +FD M  R  +SW T++S ++R          F++ LEL
Sbjct: 383 IVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 442

Query: 150 ---GFYQL---DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
              G  Q    D  +F  IL+AC         KM+      CG   +  VG A++  Y K
Sbjct: 443 EKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGK 502

Query: 204 CGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           CG    GR++F  +  R +V  W A+I+   Q     E LKLF +M +  + P+S +++S
Sbjct: 503 CGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVS 562

Query: 263 SVMACS 268
            ++ACS
Sbjct: 563 ILLACS 568


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 187/516 (36%), Positives = 292/516 (56%), Gaps = 12/516 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  ++ A  +F  +P RD VSWN M+SG+ +NG        F++ L+  + 
Sbjct: 317 NSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQ-SYS 375

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q   ++   IL +CD SE     + IHC     G+       N+L+  Y  CG   +   
Sbjct: 376 QCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFS 435

Query: 213 VFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGL 270
           +   +    +++ W  V++G  QN  + E LK F  M     +  +S+   + + AC  L
Sbjct: 436 LLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNL 495

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L  G  +HG+  K  ++SD+ +++AL+ MY +CG +E+A  IF F+   +  S   ++
Sbjct: 496 ELLFAGGSLHGLALKTLMESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMI 555

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKS 387
             F+QN     A++LF       IE +PN ++ ++G+    T LG+   GKQIH  +I+S
Sbjct: 556 SAFSQNKDGRRALELFCH-----IEFEPNEIT-IVGILSACTQLGVLRHGKQIHGHVIRS 609

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               N FV+  L +MYS CG L+ + ++F     R+  +WNSMI+AF  H NG KA+EL+
Sbjct: 610 RLQGNSFVSAALEDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELF 669

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+  G  PT  TF+SLL ACSH GLVN+G+ +  +M E+  +    EH+ C+VDM+GR
Sbjct: 670 HEMRECGTRPTKSTFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGR 729

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA  FI +MP +P+  VW ALL ACS HGD +MG+  AE LF  +P++   YI +
Sbjct: 730 AGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISL 789

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           +N+Y  +GRWK+  +  + +++ G+ K    S I++
Sbjct: 790 SNMYVAAGRWKDAVELRRIIQDKGLKKPAAYSLIDV 825



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 258/535 (48%), Gaps = 32/535 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           ++S S+  G+   G  LH    KT           + + + + N+L+  Y KC ++ ++ 
Sbjct: 79  VVSASSHMGNLTQGRVLHGISFKT----------GLLSDSFLCNALIDMYAKCGELSSSE 128

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR- 168
            +F  M  RD +SWN+M+ G   N        +FK+ +     Q D  S T  +SA    
Sbjct: 129 CVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKK-MAYSSEQADNVSLTCAVSASALL 187

Query: 169 SELSLVSKMIHCLVYLCGYEE--EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            ELS   ++IH      GY++    +  N+LI+ Y +C    +   +F EM+ +++++W 
Sbjct: 188 GELSF-GQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWN 246

Query: 227 AVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           A++ GL  NQ   E   L  +M L G + P+S+T +  +  C+ L  L EGR +HG+  +
Sbjct: 247 AMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLR 306

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             +  D  + ++L+DMYSKC  V+ A  +F+   E D VS   ++ G++QNG   EA  L
Sbjct: 307 REMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQHL 366

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +++++  +   + + A+L        L  G+ IH   +K  F +NP   N L+ MY  
Sbjct: 367 FRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYIN 426

Query: 406 CGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFL 463
           CGDL     +   + A  + V WN+++A   ++G+ ++AL+ +  M+ +  V    V   
Sbjct: 427 CGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALF 486

Query: 464 SLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +++ AC ++ L+  G       LK++ E       A     ++ M GR G +  AR  I 
Sbjct: 487 NVISACGNLELLFAGGSLHGLALKTLMESDIRVQNA-----LITMYGRCGEIENAR-IIF 540

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
                 ++  W  ++ A S + D   G+ A E LF      P    ++  + +C+
Sbjct: 541 GFSCNRNLCSWNCMISAFSQNKD---GRRALE-LFCHIEFEPNEITIVGILSACT 591



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 239/505 (47%), Gaps = 30/505 (5%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           ++P +T    SLL+ Y +     ++  LFD++  RD + WN M++  + N  F +    F
Sbjct: 6   HLPTST----SLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLF 61

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
              +  G   LD  +  I++SA          +++H + +  G   +  + NALI  Y K
Sbjct: 62  VELMGEGV-GLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAK 120

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG  SS   VFG M  R++I+W +++ G   N   ++ L  F KM       ++++   +
Sbjct: 121 CGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCA 180

Query: 264 VMACSGLQALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           V A + L  L  G+ IHG   KL  +  S    E++L+ +YS+C  ++ A  +F+  +  
Sbjct: 181 VSASALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYK 240

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GK 378
           D VS   +L G A N    EA  L  +M   G  + P+ V+ V+ +  +   L L   G+
Sbjct: 241 DIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGC-VQPDSVTVVI-IIPLCAELMLLREGR 298

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            +H L ++ +   +  V N LI+MYSKC D++ +  VF  +  R+ VSWN+MI+ ++++G
Sbjct: 299 AVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNG 358

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH--------R 490
           +  +A  L+ ++     + +  T L++L +C          EFL+    +H         
Sbjct: 359 HSREAQHLFRQLLQSYSQCSLSTLLAILPSC-------DSSEFLQFGESIHCWQLKLGFA 411

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
            +P A +   ++ M    G L+   S ++ +    D++ W  ++  C+ +G        A
Sbjct: 412 NNPLAVN--SLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHF-WEALKA 468

Query: 551 EKLFLAQPDSPAPYILMANIYSCSG 575
             L    PD     + + N+ S  G
Sbjct: 469 FNLMRQDPDVCHDSVALFNVISACG 493


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 309/578 (53%), Gaps = 31/578 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G   HA  IKT       N Y+V     + +SL++ Y K   M +A K+FD +P R+TVS
Sbjct: 132 GLQAHALAIKT------SNFYDV----FVGSSLINMYCKIGCMLDARKVFDTIPERNTVS 181

Query: 123 WNTMVSGF-LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           W T++SG+ +    F+    F     E G +  D+  +T +LSA    +L    K IHCL
Sbjct: 182 WATIISGYAMERMAFEAWELFLLMRREEGAH--DKFIYTSVLSALTVPDLVHYGKQIHCL 239

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
               G     +VGNAL+T Y KCG      K F     ++ ITW+A+I+G  Q     E 
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEA 299

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF  MHL    P+  T++  + ACS + AL EG+QIHG   K   +  +        +
Sbjct: 300 LNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYL 359

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
            +KCGS+ DA + F++ +E D V  T                    +M    I      +
Sbjct: 360 KAKCGSLVDARKGFDYLKEPDIVLWTS------------------CRMQMERIMPHELTM 401

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++VL       +L  GKQIH+  IK  F+    + + L  MY+KCG LED   VF RM  
Sbjct: 402 ASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPS 461

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ ++WN+MI+  +++G G KALEL+EE++    +P  VTF+++L ACSH+GLV +G  +
Sbjct: 462 RDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVY 521

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M +   I PR EHYAC+VD++ RAG L E + FIE   +   + +W+ LLGAC  + 
Sbjct: 522 FRMMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYR 581

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           + E+G YA EKL        + YIL+++IY+  GR  +  +  + MK  GV+KE G SWI
Sbjct: 582 NYELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWI 641

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           E++ QVH FVV D++HPQ   I   L  L   M DE Y
Sbjct: 642 ELKSQVHVFVVGDQIHPQIVKICSELRRLRDHMKDECY 679



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/384 (29%), Positives = 193/384 (50%), Gaps = 18/384 (4%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           SF  +L  C R +     K IH  +   G    V + N+L+  Y KCGS    + VF  +
Sbjct: 12  SFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESI 71

Query: 218 RVRNVITWTAVISGLVQNQL--YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
             ++V++W  +I+G  Q     Y   ++LF +M      PN  T+     A S       
Sbjct: 72  TNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETFG 131

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G Q H +  K +   D+ + S+L++MY K G + DA ++F+   E + VS   I+ G+A 
Sbjct: 132 GLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAM 191

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
                EA +LF+ M +     D  + ++VL    V   +  GKQIH L +K+   S   V
Sbjct: 192 ERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N L+ MY KCG L+D+ K F     ++ ++W++MI  +A+ G+  +AL L+  M L G 
Sbjct: 252 GNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV-------DMVGRA 508
           +P++ TF+ +++ACS +G + +G        ++H  S +A  Y C +        +  + 
Sbjct: 312 KPSEFTFVGVINACSDIGALEEG-------KQIHGYSLKAG-YECQIYFRKGFDYLKAKC 363

Query: 509 GLLIEARSFIERMPVKPDVLVWQA 532
           G L++AR   + +  +PD+++W +
Sbjct: 364 GSLVDARKGFDYLK-EPDIVLWTS 386



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 137/544 (25%), Positives = 239/544 (43%), Gaps = 41/544 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL    ++     G ++HA  ++T             ++  + NSL++ Y KC  +  A 
Sbjct: 16  LLLRCTRQKDLQKGKAIHAQLLRT----------GSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF--GFFKRSLELGFYQLDQASFTIILSACD 167
            +F+ +  +D VSWN +++G+ + G     F    F+R +       +  +F+ + +A  
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQR-MRAENTLPNGHTFSGVFTAAS 124

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            S  +      H L        +V VG++LI  Y K G     RKVF  +  RN ++W  
Sbjct: 125 SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWAT 184

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG    ++  E  +LF+ M       +   Y S + A +    +  G+QIH +  K  
Sbjct: 185 IISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNG 244

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L S   + +AL+ MY KCG ++DA++ FE + + D ++ + ++ G+AQ G   EA+ LF 
Sbjct: 245 LLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M   G +        V+       +L  GKQIH   +K+ +    +   G   + +KCG
Sbjct: 305 NMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKCG 364

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            L D+ K F  +   + V W S                    M++E + P ++T  S+L 
Sbjct: 365 SLVDARKGFDYLKEPDIVLWTSC------------------RMQMERIMPHELTMASVLR 406

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           ACS +  + +G + + + T  +  S      + +  M  + G L +      RMP + D+
Sbjct: 407 ACSSLAALEQGKQ-IHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSR-DI 464

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLF--LAQPDSPAPYILMANIYSCSGRWK--ERAKA 583
           + W A++   S +G+       A +LF  L    +   Y+   N+ S        ER K 
Sbjct: 465 MTWNAMISGLSQNGEG----LKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKV 520

Query: 584 IKRM 587
             RM
Sbjct: 521 YFRM 524



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 11/332 (3%)

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M+L L+ P   +++  ++ C+  + L +G+ IH  L +    S + + ++L+++Y+KCGS
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA--MQLFVKMVKAGIEIDPNMVSAVL 365
           +  A  +FE     D VS   ++ G++Q G    +  M+LF +M       + +  S V 
Sbjct: 61  IVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVF 120

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                      G Q H+L IK+    + FV + LINMY K G + D+ KVF  +  RN+V
Sbjct: 121 TAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTV 180

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW ++I+ +A     F+A EL+  M+ E        + S+L A +   LV+ G + +  +
Sbjct: 181 SWATIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQ-IHCL 239

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              + +   A     +V M G+ G L +A    E    K D+  W A++   +  GDS  
Sbjct: 240 ALKNGLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDI-TWSAMITGYAQAGDS-- 296

Query: 546 GKYAAEKLFLA---QPDSPAPYILMANIYSCS 574
             + A  LF       + P+ +  +  I +CS
Sbjct: 297 --HEALNLFYNMHLNGNKPSEFTFVGVINACS 326


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 326/601 (54%), Gaps = 12/601 (1%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L + A+E    LG  +H   +K     D + V N        N+L+  Y KC  + NA 
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKL--RLDKELVLN--------NALMDMYSKCGCITNAQ 347

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDR 168
            +F     ++ VSWNTMV GF   G+    F   ++ L  G   + D+ +    +  C  
Sbjct: 348 MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                  K +HC      +     V NA + SY KCGS S  ++VF  +R + V +W A+
Sbjct: 408 ESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 467

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G  Q+      L   ++M +  + P+S T  S + ACS L++L  G+++HG + +  L
Sbjct: 468 IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 527

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + DL +  +++ +Y  CG +     +F+  E+   VS   ++ G+ QNGF + A+ +F +
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           MV  GI++    +  V G   +  SL LG++ H+  +K     + F+   LI+MY+K G 
Sbjct: 588 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 647

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +  S KVF+ +  +++ SWN+MI  +  HG   +A++L+EEM+  G  P D+TFL +L A
Sbjct: 648 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMPVKPDV 527
           C+H GL+++G+ +L  M     + P  +HYACV+DM+GRAG L +A R   E M  + DV
Sbjct: 708 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 767

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            +W++LL +C IH + EMG+  A KLF  +P+ P  Y+L++N+Y+  G+W++  K  +RM
Sbjct: 768 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 827

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            EM + K+ G SWIE+ ++V SFVV ++     + I  + + L   +   GY P+   + 
Sbjct: 828 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 887

Query: 648 H 648
           H
Sbjct: 888 H 888



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 219/483 (45%), Gaps = 20/483 (4%)

Query: 7   FLKLNSNFPFCSSLVSPFIT--KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP 64
           FL+  SNF     L   F T  + + D  SS+   +L     +  LL  S K     +G 
Sbjct: 46  FLRRISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREA-LGLLLQASGKRKDIEMGR 104

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
            +H                 + N  V+   +++ Y  C    ++  +FD +  ++   WN
Sbjct: 105 KIHQLV---------SGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWN 155

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
            ++S + RN  +D     F   +       D  ++  ++ AC       +   +H LV  
Sbjct: 156 AVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK 215

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G  E+V VGNAL++ Y   G  +   ++F  M  RN+++W ++I     N   EE   L
Sbjct: 216 TGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLL 275

Query: 245 FVKMHL----GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
             +M      G   P+  T ++ +  C+  + +  G+ +HG   KL L  +L + +ALMD
Sbjct: 276 LGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMD 335

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSKCG + +A  IF+     + VS   ++ GF+  G       +  +M+  G ++  + 
Sbjct: 336 MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADE 395

Query: 361 VSAVLGVFGV---DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           V+ +L    V   ++ L   K++H   +K +F  N  V N  +  Y+KCG L  + +VF 
Sbjct: 396 VT-ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFH 454

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  +   SWN++I   A+  +   +L+ + +MK+ G+ P   T  SLL ACS +  +  
Sbjct: 455 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRL 514

Query: 478 GME 480
           G E
Sbjct: 515 GKE 517



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 184/383 (48%), Gaps = 20/383 (5%)

Query: 127 VSGFLRNGEFDMGFGFFKR------SLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +S F   G+ D  F   +       S    F  + +A   ++ ++  R ++ +  K+   
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +        +  +   +IT Y  CGS    R VF  +R +N+  W AVIS   +N+LY+E
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169

Query: 241 GLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
            L+ F++M     + P+  TY   + AC+G+  +  G  +HG++ K  L  D+ + +AL+
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALV 229

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK----AGIE 355
             Y   G V DA Q+F+   E + VS   ++  F+ NGF EE+  L  +M++        
Sbjct: 230 SFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFM 289

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  VL V   +  +GLGK +H   +K        +NN L++MYSKCG + ++  +
Sbjct: 290 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 349

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL--EGVEPTDVTFLSLLHACSHVG 473
           F     +N VSWN+M+  F+  G+     ++  +M    E V+  +VT L+ +  C H  
Sbjct: 350 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH-- 407

Query: 474 LVNKGMEFLKSMTEVHRISPRAE 496
                  FL S+ E+H  S + E
Sbjct: 408 -----ESFLPSLKELHCYSLKQE 425



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 213/456 (46%), Gaps = 7/456 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL- 149
           + N+L+SFY     + +A++LFD MP R+ VSWN+M+  F  NG  +  F      +E  
Sbjct: 224 VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 283

Query: 150 --GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G +  D A+   +L  C R     + K +H        ++E+ + NAL+  Y KCG  
Sbjct: 284 GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCI 343

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVM 265
           ++ + +F     +NV++W  ++ G            +  +M  G   +  + +T L++V 
Sbjct: 344 TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 403

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C     L   +++H    K     +  + +A +  Y+KCGS+  A ++F         S
Sbjct: 404 VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS 463

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G AQ+     ++   ++M  +G+  D   V ++L       SL LGK++H  II
Sbjct: 464 WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 523

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           ++    + FV   ++++Y  CG+L     +F  M  ++ VSWN++I  + ++G   +AL 
Sbjct: 524 RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 583

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++ +M L G++   ++ + +  ACS +  +  G E   +    H +   A     ++DM 
Sbjct: 584 VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-AHAYALKHLLEDDAFIACSLIDMY 642

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + G + ++      +  K     W A++    IHG
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTA-SWNAMIMGYGIHG 677


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/537 (35%), Positives = 306/537 (56%), Gaps = 12/537 (2%)

Query: 122  SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS-KMIHC 180
            SWN++++   R G+       F    +LG     ++SF   + +C  +   LVS +M H 
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIP-TRSSFPCTIKSCS-ALCDLVSGRMSHQ 1166

Query: 181  LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
              ++ G+E ++ V +ALI  Y KCG     R +F E+ +RNV++WT++I+G VQN+  + 
Sbjct: 1167 QAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADN 1226

Query: 241  GLKLF-------VKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
             L LF        ++  G   P +S+  +S + ACS +        +HG + K      +
Sbjct: 1227 ALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSI 1286

Query: 293  CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK- 351
             + + LMD Y+KCG    + ++F++ EE D +S   ++  +AQ+G   EA+++F  MV+ 
Sbjct: 1287 GVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRH 1346

Query: 352  AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             G+  +   +SAVL       +L  GK IH  +IK D   N  V   +I+MY KCG +E 
Sbjct: 1347 VGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEM 1406

Query: 412  SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
            + K F RM  +N  SW +M+A +  HG   +AL+++ +M   GV+P  +TF+S+L ACSH
Sbjct: 1407 AKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSH 1466

Query: 472  VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             GLV +G  +  +M   + I P  EHY C+VD+ GRAG L EA + I+RM +KPD +VW 
Sbjct: 1467 AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWG 1526

Query: 532  ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
            +LLGAC IH + ++G+ AA+KLF   PD+   Y+L++N+Y+ +GRW +  +    MK   
Sbjct: 1527 SLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 1586

Query: 592  VDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            + K  G S +E++ +VH F+V DK HP  + I+  L +L   +   GYVPN   +LH
Sbjct: 1587 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLH 1643



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 212/390 (54%), Gaps = 24/390 (6%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL--- 149
            ++L+  Y KC Q+++A  LFD++P+R+ VSW +M++G+++N + D     FK  LE    
Sbjct: 1181 SALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 1240

Query: 150  ----GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
                    LD      +LSAC R     +++ +H  V   G++  + VGN L+ +Y KCG
Sbjct: 1241 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 1300

Query: 206  SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSS 263
                 +KVF  M  ++ I+W ++I+   Q+ L  E L++F  M  H+G +  N++T  + 
Sbjct: 1301 QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG-VRYNAVTLSAV 1359

Query: 264  VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
            ++AC+   AL  G+ IH  + K+ L+ ++C+ ++++DMY KCG VE A + F+  +E + 
Sbjct: 1360 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 1419

Query: 324  VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---- 379
             S T ++ G+  +G  +EA+ +F KMV+AG++  PN ++ V  V    +  GL ++    
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK--PNYITFV-SVLAACSHAGLVEEGWHW 1476

Query: 380  IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHG 438
             +++  K D          +++++ + G L ++  +  RM  + + V W S++ A   H 
Sbjct: 1477 FNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHK 1536

Query: 439  NGFKALELYE--EMKLEGVEPTDVTFLSLL 466
            N    ++L E    KL  ++P +  +  LL
Sbjct: 1537 N----VDLGEIAAQKLFELDPDNCGYYVLL 1562



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 176/370 (47%), Gaps = 31/370 (8%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + IH  +   G   +  +   LI  Y   G  +    +F +++     TW  +I     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            L E+ L L+  M    I  +  T+   + AC+   ++  G+ +HG L K     D+ ++
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 296 SALMDMYSKCG-------------------------------SVEDAWQIFEFAEELDGV 324
           + L+D Y KCG                                +++A +IF+     + V
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T ++ G+ +N   EEA++LF +M    I  +   + +++        L LG+ IH   
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK+      ++   LI+MYSKCG ++D+I+VF  M  ++  +WNSMI +   HG G +AL
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L+ EM+   V+P  +TF+ +L AC H+  V +G  +   MT+ + I+P  EHY C+ ++
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 505 VGRAGLLIEA 514
             R+  L EA
Sbjct: 404 YARSNNLDEA 413



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 173/338 (51%), Gaps = 21/338 (6%)

Query: 221  NVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            NV +W +VI+ L +     E L+ F  +  LGLI P   ++  ++ +CS L  L  GR  
Sbjct: 1106 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRSSFPCTIKSCSALCDLVSGRMS 1164

Query: 280  HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
            H   +    ++DL + SAL+DMYSKCG ++DA  +F+     + VS T ++ G+ QN   
Sbjct: 1165 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 1224

Query: 340  EEAMQLFVKMVKAGIEI--------DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            + A+ LF   ++   E+        D  ++ +VL      +  G+ + +H  ++K  F  
Sbjct: 1225 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 1284

Query: 392  NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM- 450
            +  V N L++ Y+KCG    S KVF  M  ++ +SWNSMIA +A+ G   +ALE++  M 
Sbjct: 1285 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMV 1344

Query: 451  KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVG 506
            +  GV    VT  ++L AC+H G +  G      + ++       E+  CV    +DM  
Sbjct: 1345 RHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMD-----LEYNVCVGTSIIDMYC 1399

Query: 507  RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + G +  A+   +RM  K +V  W A++    +HG ++
Sbjct: 1400 KCGRVEMAKKTFDRMKEK-NVKSWTAMVAGYGMHGRAK 1436



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 32/302 (10%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  ++   L+  Y    ++  A+ LF  +    T +WN ++     NG  +     +K  
Sbjct: 57  NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM 116

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G    D+ +F  ++ AC       + K++H  +   G+  +V V N LI  YFKCG 
Sbjct: 117 VCQGI-AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGH 175

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLV-------------------------------QN 235
           +    KVF +MRVRNV++WT VISGL+                               +N
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           Q  EE L+LF +M    I PN  T +S + AC+ +  L  GR IH    K  ++  + + 
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +AL+DMYSKCGS++DA ++FE        +   ++     +G  +EA+ LF +M +  ++
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 356 ID 357
            D
Sbjct: 356 PD 357



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 162/385 (42%), Gaps = 77/385 (20%)

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           RQIH  + +  L +D  +   L+ +YS  G +  A  +F   +     +  +I+     N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 337 GFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           G  E+A+ L+  MV  GI  D    P ++ A      +D    LGK +H  +IK  F+ +
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSID----LGKVVHGSLIKYGFSGD 159

Query: 393 PFVNNGLINMYSKCG-------------------------------DLEDSIKVFSRMAP 421
            FV N LI+ Y KCG                               DL+++ ++F  +  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +N VSW +MI  + R+    +ALEL++ M+ E + P + T +SL+ AC+ +G++  G   
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 482 ----------------------------LKSMTEVHRISPRAE--HYACVVDMVGRAGLL 511
                                       +K   EV    PR     +  ++  +G  GL 
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 512 IEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YIL 566
            EA +    +ER+ VKPD + +  +L AC    + + G     ++      +P P  Y  
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYEC 399

Query: 567 MANIYSCSGRWKERAKAIKRMKEMG 591
           M  +Y+ S    E   A K  KE+G
Sbjct: 400 MTELYARSNNLDE---AFKSTKEVG 421



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 9/211 (4%)

Query: 67  HASF-IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           H  F +K FE    +NV       V W +++S  + C  ++ A ++FD++P ++ VSW  
Sbjct: 175 HTRFALKVFEKMRVRNV-------VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTA 227

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M++G++RN + +     FKR      +  ++ +   ++ AC    +  + + IH      
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLGRGIHDYAIKN 286

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
             E  V +G ALI  Y KCGS     +VF  M  +++ TW ++I+ L  + L +E L LF
Sbjct: 287 CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLF 346

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
            +M    + P+++T++  + AC  ++ + EG
Sbjct: 347 SEMERVNVKPDAITFIGVLCACVHIKNVKEG 377


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 330/602 (54%), Gaps = 15/602 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL + + EG+  +G  +H   +K            + +  ++ N+L+  Y KC  +  A 
Sbjct: 319 LLPVCSGEGNVDVGMVIHGMAVKL----------GLVHELMVCNALIDMYSKCGCLSEAA 368

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS-LELGFYQLDQASFTIILSAC-D 167
            LF  +  +  VSWN+M+  + R G     F   ++  +E    ++++ +   +L AC +
Sbjct: 369 ILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLE 428

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            SEL L  + +H       ++ +  + NA I +Y KCGS      VF  M  ++V +W A
Sbjct: 429 ESEL-LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNA 487

Query: 228 VISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           VI G  QN    + L  + +M  LG++ P+  + +S ++AC  L  L  G++IHG + + 
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKEIHGFVLRN 546

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L+ +  +  +L+ +Y  C         FE   + + V    +L G++QN    EA+ LF
Sbjct: 547 GLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLF 606

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M+  G+E D   ++++LG     ++LGLGK++H   +K+    + FV   L++MY+K 
Sbjct: 607 RQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKS 666

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G L  S ++F+R+  +   SWN MI  F  HG G KA+EL+E+MK    +P   TFL +L
Sbjct: 667 GFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVL 726

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC H GLV++G+ +L  M  ++++ P  EHYACV+DM+GRAG L EA +FI  MP +PD
Sbjct: 727 QACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPD 786

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
             +W +LL +   + D EMG+  AEKL   + +    YIL++N+Y+ +G+W       ++
Sbjct: 787 AKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQK 846

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           MK++ + K+ G SWIE+  +V+SF+  +  +P +D I  +   L + +++ GY P+   +
Sbjct: 847 MKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCV 906

Query: 647 LH 648
           LH
Sbjct: 907 LH 908



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 151/558 (27%), Positives = 261/558 (46%), Gaps = 36/558 (6%)

Query: 1   MKSKWVFLKL-NSNFPFCSSLVSPFITKIIQDPTSST-------SKLVLDNYVDISRLLS 52
           ++S+ VF +L N N    ++LVS ++   + D    T       ++   DN+     L+ 
Sbjct: 160 LESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFT-FPCLIK 218

Query: 53  ISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLF 112
               +   HLG S+H   +K     D            + N++++ Y KC  +  AV+LF
Sbjct: 219 ACTGKCDIHLGKSVHGMAVKMGLIMD----------LFVGNAMIALYGKCGFLDEAVELF 268

Query: 113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-DQASFTIILSACDRSEL 171
           D MP ++ +SWN+++ GF  NG +   +  F+  LE G   + D A+   +L  C     
Sbjct: 269 DKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGN 328

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             V  +IH +    G   E+ V NALI  Y KCG  S    +F ++  ++V++W ++I  
Sbjct: 329 VDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGA 388

Query: 232 LVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
             +     E   L  KM +   L+  N +T L+ + AC     L   R +HG   + + Q
Sbjct: 389 YSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQ 448

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
               I +A +  Y+KCGS+  A  +F         S   ++ G AQNG   +A+  + +M
Sbjct: 449 YKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEM 508

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            + GI  D   + ++L   G    L  GK+IH  ++++    N FV   L+++Y  C   
Sbjct: 509 TRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKP 568

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
                 F RM  +NSV WN+M++ ++++    +AL L+ +M  +G+EP ++   S+L AC
Sbjct: 569 FYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGAC 628

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRA-----EHYAC-VVDMVGRAGLLIEARSFIERMPV 523
           S +  +  G        EVH  + +         AC ++DM  ++G L  ++    R+  
Sbjct: 629 SQLSALGLG-------KEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNG 681

Query: 524 KPDVLVWQALLGACSIHG 541
           K +V  W  ++    +HG
Sbjct: 682 K-EVASWNVMITGFGVHG 698



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/461 (28%), Positives = 227/461 (49%), Gaps = 22/461 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+   L++ Y  C     +  +FD +  ++   WN +VSG++RN  +D     F   + +
Sbjct: 144 VLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISV 203

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +Q D  +F  ++ AC       + K +H +    G   ++ VGNA+I  Y KCG    
Sbjct: 204 TEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDE 263

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF---VKMHLGLINPNSLTYLSSVMA 266
             ++F +M  +N+I+W ++I G  +N  + E  + F   ++   GLI P+  T ++ +  
Sbjct: 264 AVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLI-PDVATMVTLLPV 322

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CSG   +  G  IHG+  KL L  +L + +AL+DMYSKCG + +A  +F   E    VS 
Sbjct: 323 CSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSW 382

Query: 327 TVILVGFAQNGFEEEAMQLFVK--MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
             ++  +++ GF  E   L  K  M +  +E++   +  +L     ++ L   + +H   
Sbjct: 383 NSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYS 442

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           ++  F     +NN  I  Y+KCG L  +  VF  M  ++  SWN++I   A++G+  KAL
Sbjct: 443 LRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKAL 502

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHR---ISPRAEH 497
           + Y EM   G+ P D + +SLL AC  +GL+  G E     L++  E++    +S  + +
Sbjct: 503 DFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLY 562

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           + C     G        R++ ERM  K  V  W A+L   S
Sbjct: 563 FHCSKPFYG--------RTYFERMGDKNSV-CWNAMLSGYS 594



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/431 (28%), Positives = 220/431 (51%), Gaps = 23/431 (5%)

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGF-YQLDQ--ASFTIILSACDR-SELSLVSKMIHCLV 182
           +S     G+ +    F +R+ +    Y L Q   +  ++L  C +   + +  K+   L 
Sbjct: 75  ISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLC 134

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  +  +   LIT Y  CG     R VF  +  +N+  W A++SG V+N+LY+E +
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 243 KLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
             F+++  +    P++ T+   + AC+G   +  G+ +HG+  K+ L  DL + +A++ +
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIAL 254

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG +++A ++F+   E + +S   ++ GF++NGF  EA + F  ++++G  + P++ 
Sbjct: 255 YGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVA 314

Query: 362 SAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           + V  L V   + ++ +G  IH + +K        V N LI+MYSKCG L ++  +F ++
Sbjct: 315 TMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKI 374

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPTDVTFLSLLHACSHVGLVNK 477
             ++ VSWNSMI A++R G  F+  +L  +M +E   +E  +VT L+LL AC        
Sbjct: 375 ENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES---- 430

Query: 478 GMEFLKSMTEVHRISPRAE-HYACVVD-----MVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             E L S+  +H  S R    Y  +++        + G L+ A      M  K  V  W 
Sbjct: 431 --ELL-SLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTK-SVSSWN 486

Query: 532 ALLGACSIHGD 542
           A++G  + +GD
Sbjct: 487 AVIGGHAQNGD 497


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 311/553 (56%), Gaps = 8/553 (1%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ YLK  +  +A ++FD+M +RD+VS+NTM+ G+L+    +     F  +L+   ++ 
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKP 305

Query: 155 DQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           D  + + +L AC    +LSL +K I+  +   G+  E TV N LI  Y KCG   + R V
Sbjct: 306 DLLTVSSVLRACGHLRDLSL-AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDV 364

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  ++ ++W ++ISG +Q+    E +KLF  M +     + +TYL  +   + L  L
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADL 424

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+ +H    K  +  DL + +AL+DMY+KCG V D+ +IF      D V+   ++   
Sbjct: 425 KFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISAC 484

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            + G     +Q+  +M K+  E+ P+M +    L +     +  LGK+IH  +++  + S
Sbjct: 485 VRFGDFATGLQVTTQMRKS--EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYES 542

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
              + N LI MYSKCG LE+S +VF RM+ R+ V+W  MI A+  +G G KALE + +M+
Sbjct: 543 ELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADME 602

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+ P  V F+++++ACSH GLV++G+   + M   ++I P  EHYACVVD++ R+  +
Sbjct: 603 KSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKI 662

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            +A  FI+ MP+KPD  +W ++L AC   GD E  +  + ++    PD P   IL +N Y
Sbjct: 663 SKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAY 722

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +   +W + +   K +K+  + K  G SWIE+ K VH F   D   PQ++ I+  L  L 
Sbjct: 723 AALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILY 782

Query: 632 RLMIDEGYVPNKR 644
            LM  EGY+P+ R
Sbjct: 783 SLMAKEGYIPDPR 795



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 251/494 (50%), Gaps = 25/494 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y +   +  A ++FD+MP+RD VSWN+++SG+  +       G+++ +LE+ 
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH-------GYYEEALEI- 194

Query: 151 FYQLDQA-----SFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           +++L  +     SFT+  +L A     +    + +H      G    V V N L+  Y K
Sbjct: 195 YHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLK 254

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
               +  R+VF EM VR+ +++  +I G ++ ++ EE +++F++ +L    P+ LT  S 
Sbjct: 255 FRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSV 313

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC  L+ L   + I+  + K     +  + + L+D+Y+KCG +  A  +F   E  D 
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   I+ G+ Q+G   EAM+LF  M+    + D      ++ V      L  GK +HS 
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSN 433

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            IKS    +  V+N LI+MY+KCG++ DS+K+FS M   ++V+WN++I+A  R G+    
Sbjct: 434 GIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATG 493

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L++  +M+   V P   TFL  L  C+ +     G E    +      S      A +++
Sbjct: 494 LQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA-LIE 552

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--- 560
           M  + G L  +    ERM  + DV+ W  ++ A  ++G+ E     A + F     S   
Sbjct: 553 MYSKCGCLENSSRVFERMS-RRDVVTWTGMIYAYGMYGEGE----KALETFADMEKSGIV 607

Query: 561 PAPYILMANIYSCS 574
           P   + +A IY+CS
Sbjct: 608 PDSVVFIAIIYACS 621



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 224/433 (51%), Gaps = 8/433 (1%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P ++   WN+++  F +NG F     F+ + L       D+ +F  ++ AC     + + 
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGK-LRESKVSPDKYTFPSVIKACAGLFDAEMG 125

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
            +++  +   G+E ++ VGNAL+  Y + G  +  R+VF EM VR++++W ++ISG   +
Sbjct: 126 DLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSH 185

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             YEE L+++ ++    I P+S T  S + A   L  + +G+ +HG   K  + S + + 
Sbjct: 186 GYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVN 245

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           + L+ MY K     DA ++F+  +  D VS   ++ G+ +    EE++++F++ +    +
Sbjct: 246 NGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD---Q 302

Query: 356 IDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
             P++  VS+VL   G    L L K I++ ++K+ F     V N LI++Y+KCGD+  + 
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITAR 362

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            VF+ M  +++VSWNS+I+ + + G+  +A++L++ M +   +   +T+L L+   + + 
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLA 422

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +  G + L S      I         ++DM  + G + ++      M    D + W  +
Sbjct: 423 DLKFG-KGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTG-DTVTWNTV 480

Query: 534 LGACSIHGDSEMG 546
           + AC   GD   G
Sbjct: 481 ISACVRFGDFATG 493



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 182/374 (48%), Gaps = 16/374 (4%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQ 234
           + IH LV   G +        LI  Y      +S   VF  +   +NV  W ++I    +
Sbjct: 24  RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSK 83

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N L+ E L+ + K+    ++P+  T+ S + AC+GL     G  ++  +  +  +SDL +
Sbjct: 84  NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFV 143

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +AL+DMYS+ G +  A Q+F+     D VS   ++ G++ +G+ EEA++++ ++  + I
Sbjct: 144 GNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWI 203

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D   VS+VL  FG    +  G+ +H   +KS   S   VNNGL+ MY K     D+ +
Sbjct: 204 VPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARR 263

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE---MKLEGVE---PTDVTFLSLLHA 468
           VF  M  R+SVS+N+MI        G+  LE+ EE   M LE ++   P  +T  S+L A
Sbjct: 264 VFDEMDVRDSVSYNTMIC-------GYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRA 316

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           C H+  ++        M +   +         ++D+  + G +I AR     M  K D +
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVR-NILIDVYAKCGDMITARDVFNSMECK-DTV 374

Query: 529 VWQALLGACSIHGD 542
            W +++      GD
Sbjct: 375 SWNSIISGYIQSGD 388



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 11/227 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L+S+S +      G  LH++ IK+    D            + N+L+  Y KC ++ +++
Sbjct: 414 LISVSTRLADLKFGKGLHSNGIKSGICID----------LSVSNALIDMYAKCGEVGDSL 463

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F  M   DTV+WNT++S  +R G+F  G     + +       D A+F + L  C   
Sbjct: 464 KIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQ-MRKSEVVPDMATFLVTLPMCASL 522

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               + K IHC +   GYE E+ +GNALI  Y KCG   +  +VF  M  R+V+TWT +I
Sbjct: 523 AAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMI 582

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
                    E+ L+ F  M    I P+S+ +++ + ACS    + EG
Sbjct: 583 YAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEG 629



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 9/218 (4%)

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A S    L E R+IH ++  L L S       L+D YS       +  +F        V 
Sbjct: 13  ALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVY 72

Query: 326 M-TVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQI 380
           +   I+  F++NG   EA++ + K+ ++ +  D    P+++ A  G+F  +    +G  +
Sbjct: 73  LWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAE----MGDLV 128

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           +  I+   F S+ FV N L++MYS+ G L  + +VF  M  R+ VSWNS+I+ ++ HG  
Sbjct: 129 YEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYY 188

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            +ALE+Y E+K   + P   T  S+L A  ++ +V +G
Sbjct: 189 EEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQG 226


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/608 (32%), Positives = 322/608 (52%), Gaps = 14/608 (2%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           LV D +     ++   A      LG  LHA  IK              +  +  N+L++ 
Sbjct: 164 LVPDQFA-FGSIIKACASSSDVGLGKQLHAQVIK----------LESSSHLIAQNALIAM 212

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFYQLDQA 157
           Y++ +QM +A ++F  +PM+D +SW+++++GF + G EF+      K  L  G +  ++ 
Sbjct: 213 YVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFE-ALSHLKEMLSFGVFHPNEY 271

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
            F   L AC           IH L            G +L   Y +CG  +S R+VF ++
Sbjct: 272 IFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQI 331

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              +  +W  +I+GL  N   +E + +F +M      P++++  S + A +   AL +G 
Sbjct: 332 ERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGM 391

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQN 336
           QIH  + K    +DL + ++L+ MY+ C  +   + +FE F    D VS   IL    Q+
Sbjct: 392 QIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQH 451

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
               E ++LF  M+ +  E D   +  +L      +SL LG Q+H   +K+      F+ 
Sbjct: 452 EQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIK 511

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           NGLI+MY+KCG L  + ++F  M  R+ VSW+++I  +A+ G G +AL L++EMK  G+E
Sbjct: 512 NGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIE 571

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P  VTF+ +L ACSHVGLV +G++   +M   H ISP  EH +CVVD++ RAG L EA  
Sbjct: 572 PNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAER 631

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FI+ M ++PDV+VW+ LL AC   G+  + + AAE +    P +   ++L+ ++++ SG 
Sbjct: 632 FIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGN 691

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W+  A     MK+  V K  G SWIEIE ++H F  +D  HP+ D I+ VL  +   M+D
Sbjct: 692 WENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQMLD 751

Query: 637 EGYVPNKR 644
           E    +K+
Sbjct: 752 ECNPQHKK 759



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 227/453 (50%), Gaps = 5/453 (1%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           N    T++ N +LS Y KC  +R+A ++FD MP R+ VS+ ++++G+ +NG+       +
Sbjct: 97  NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLY 156

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            + L+      DQ +F  I+ AC  S    + K +H  V        +   NALI  Y +
Sbjct: 157 LKMLQEDLVP-DQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVR 215

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLS 262
               S   +VF  + ++++I+W+++I+G  Q     E L    +M   G+ +PN   + S
Sbjct: 216 FNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 275

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           S+ ACS L     G QIHG+  K  L  +     +L DMY++CG +  A ++F+  E  D
Sbjct: 276 SLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPD 335

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             S  VI+ G A NG+ +EA+ +F +M  +G   D   + ++L       +L  G QIHS
Sbjct: 336 TASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHS 395

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGF 441
            IIK  F ++  V N L+ MY+ C DL     +F       +SVSWN+++ A  +H    
Sbjct: 396 YIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPV 455

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           + L L++ M +   EP  +T  +LL  C  +  +  G + +   +    ++P       +
Sbjct: 456 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQ-VHCYSLKTGLAPEQFIKNGL 514

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +DM  + G L +AR   + M  + DV+ W  L+
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNR-DVVSWSTLI 546



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 178/348 (51%), Gaps = 10/348 (2%)

Query: 142 FFKRSLELGFYQLDQASFTI-------ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
           F++ +LE   +    +SF I       ++ AC  S      + IH  +     + +  + 
Sbjct: 46  FYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILN 105

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N +++ Y KCGS    R+VF  M  RN++++T+VI+G  QN    E ++L++KM    + 
Sbjct: 106 NHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLV 165

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+   + S + AC+    +  G+Q+H  + KL   S L  ++AL+ MY +   + DA ++
Sbjct: 166 PDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRV 225

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDT 372
           F      D +S + I+ GF+Q GFE EA+    +M+  G+   PN  +  + L       
Sbjct: 226 FYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSLL 284

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
               G QIH L IKS+   N      L +MY++CG L  + +VF ++   ++ SWN +IA
Sbjct: 285 RPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIA 344

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             A +G   +A+ ++ +M+  G  P  ++  SLL A +    +++GM+
Sbjct: 345 GLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQ 392



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 171/326 (52%), Gaps = 26/326 (7%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNS------LTYLSSVMACSGLQALCEGRQIHGI 282
           I+ L ++  Y E L+ F          NS       TY+S + ACS  ++L +GR+IH  
Sbjct: 38  INSLCKSNFYREALEAF-----DFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDH 92

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           +     + D  + + ++ MY KCGS+ DA ++F+F  E + VS T ++ G++QNG   EA
Sbjct: 93  ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEA 152

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++L++KM++  +  D     +++      + +GLGKQ+H+ +IK + +S+    N LI M
Sbjct: 153 IRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAM 212

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTDVT 461
           Y +   + D+ +VF  +  ++ +SW+S+IA F++ G  F+AL   +EM   GV  P +  
Sbjct: 213 YVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYI 272

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGRAGLLIEAR 515
           F S L ACS +   + G       +++H +  ++E     +      DM  R G L  AR
Sbjct: 273 FGSSLKACSSLLRPDYG-------SQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSAR 325

Query: 516 SFIERMPVKPDVLVWQALLGACSIHG 541
              +++  +PD   W  ++   + +G
Sbjct: 326 RVFDQIE-RPDTASWNVIIAGLANNG 350


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/604 (32%), Positives = 323/604 (53%), Gaps = 23/604 (3%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA-------TVIWNSLLSFYLK 101
           +LLS +    HFH  P +  + I+       QN    PN        +V+  +L+  Y  
Sbjct: 5   KLLSTT----HFHPIPLIVRNSIQLV-----QNCTTPPNPPFIPKGPSVLATTLIKSYFG 55

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
              +  A  LFD+MP RD V+W  M++G+         +  F    E+   +LD  +FTI
Sbjct: 56  KGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVF---CEMMNEELDPNAFTI 112

Query: 162 --ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SSGRKVFGEMR 218
             +L AC   +     +++H L    G +  + V NAL+  Y  C  S      VF  + 
Sbjct: 113 SSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIH 172

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           ++N ++WT +I+G         GL++F +M L  +  N  ++  +V AC+ + +   G Q
Sbjct: 173 LKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQ 232

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H  + K   +S+L + ++++DMY +C    +A + F    + D ++   ++ G+ ++  
Sbjct: 233 LHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN- 291

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             E++ +F  M   G   +    ++++        L  G+QIH  II+     N  ++N 
Sbjct: 292 PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNA 351

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MYSKCG++ DS +VF  M+ R+ VSW +M+  +  HG G +A+EL+++M   G+ P 
Sbjct: 352 LIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPD 411

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            V F+++L ACSH GLV++G+ + K M   + ISP  E Y CVVD++GRAG + EA   I
Sbjct: 412 RVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELI 471

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E MP KPD  VW   LGAC  H    +GK AA ++   +P     Y++++NIY+  G+W 
Sbjct: 472 ESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYAADGKWG 531

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           E A+  K MK MG  KETG SW+E+   V+SFVV D++  + + I+ VL  L+  M + G
Sbjct: 532 EFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLENLIGHMKESG 591

Query: 639 YVPN 642
           YVP+
Sbjct: 592 YVPD 595


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 170/427 (39%), Positives = 260/427 (60%), Gaps = 31/427 (7%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           + PN  T  + V AC+ + +L +G+Q H  + K+  +SD+ +++AL+ MY++CGS+EDA 
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 313 QIFE-----------------------------FAE--ELDGVSMTVILVGFAQNGFEEE 341
            +F+                             F E  E D VS T ++ G+AQNG+ +E
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           ++ +F +M K G++ D  ++ +VL       +L LG+Q H+ +++S F  +  V + L++
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G +ED+ +VF +M  RN VSWNS+I   A+HG G  A+ L+E+M   G++P +++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+ +L ACSH GLVN+G  +   MT+ + I P   HY C++D++GRAG L EA +FI  M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           PV+PDV VW ALLGAC IHG++E+ K  AE L   +      Y+L++NIY+ +G+W + A
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  K MK+ GV K+ G SWIE++  +H+FV  +  HPQ   IH  L  L R M   GYVP
Sbjct: 366 KVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVP 425

Query: 642 NKRFILH 648
           NK F+L 
Sbjct: 426 NKNFVLQ 432



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 163/333 (48%), Gaps = 41/333 (12%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS-------- 206
           +Q + + ++ AC         K  H  +   G+E +V V  AL+  Y +CGS        
Sbjct: 9   NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68

Query: 207 ----SSSGR-------------------KVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
                 S R                   K+F EM  R+V++WTAVI+G  QN   +E L 
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           +F +M    +  +     S + AC+ L AL  GRQ H  + +     D+ + SAL+DMY+
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA 188

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           K GS+EDA Q+F+   + + VS   I+ G AQ+G   +A+ LF +M++AGI+  PN +S 
Sbjct: 189 KSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK--PNEISF 246

Query: 364 VLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSR 418
           V GV    +  GL   G+   +L+ + ++   P V++   +I++  + G L+++    + 
Sbjct: 247 V-GVLSACSHTGLVNEGRGYFNLMTQ-NYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 419 MAPRNSVS-WNSMIAAFARHGNGFKALELYEEM 450
           M     VS W +++ A   HGN   A  + E +
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHL 337



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           +T  WN++++ + +   M+ A+KLF +M  RD VSW  +++G+ +NG  D     F +  
Sbjct: 75  STRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR 134

Query: 148 ELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + G  + D+     +LSAC D + L L  +  H  V   G+  ++ VG+AL+  Y K GS
Sbjct: 135 KTGM-KSDRFIMGSVLSACADLAALEL-GRQFHAYVVQSGFALDIVVGSALVDMYAKSGS 192

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                +VF +M  RN ++W ++I+G  Q+    + + LF +M    I PN ++++  + A
Sbjct: 193 MEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSA 252

Query: 267 CSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDA 311
           CS    + EGR    ++ +   +  D+   + ++D+  + G +++A
Sbjct: 253 CSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEA 298



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 41/228 (17%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           MV  G++ +   +S V+       SL  GKQ H+ IIK  F S+  V   L++MY++CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 409 LEDSIKVFSRMAPRNSVSWNSM-------------------------------IAAFARH 437
           LED+  VF +M+ R++ +WN+M                               IA +A++
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISP 493
           G G ++L ++ +M+  G++       S+L AC+ +  +  G +F    ++S   +  +  
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            A     +VDM  ++G + +A    ++MP + +V  W +++  C+ HG
Sbjct: 181 SA-----LVDMYAKSGSMEDACQVFDKMPQRNEV-SWNSIITGCAQHG 222


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 321/578 (55%), Gaps = 31/578 (5%)

Query: 57  EGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           E +F +G  LH+  +K          +       + N+L+S Y +   +  A ++F++M 
Sbjct: 177 EAYFLIGLQLHSCIVK----------FGFDCEVFVGNALISMYSRWGHLVEARRVFEEMK 226

Query: 117 MRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
            RD VSWN M+SG+ + G + +     F +    G  +LD+ SFT  +SAC   +   ++
Sbjct: 227 TRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGM-ELDRISFTSAVSACGYEKNLELA 285

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + IH L     +E+ V V N LI++YFKC      R VF  M  RNV++WT +IS     
Sbjct: 286 RQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMIS----- 340

Query: 236 QLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
            + E E +  F +M L  + PN +T++  + A +  + + +G+ +HG   K    S   +
Sbjct: 341 -IDEAEAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNV 399

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            ++++ MY+K  S++D+ ++F+  +  D ++   ++ GF  NG  +EA++ F   +   I
Sbjct: 400 CNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGL---I 456

Query: 355 EIDPNMVS--AVLGVFGV--DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           E  PN  S  ++L   G   D SL  G++ HS IIK    ++P V++ L++MY+K G + 
Sbjct: 457 ESKPNQYSFGSILNAIGAAEDVSLKYGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSIC 516

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           +S KVF     ++  +W ++I+A+ARHG+    +  +EEM+   V P  +TFLS+L AC 
Sbjct: 517 ESQKVFVETPQQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDSITFLSILTACG 576

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
             G+V+ G     SM + ++I P AEHY+C+VDM+GRAG L EA   +  +P  P + V 
Sbjct: 577 RRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLVDMLGRAGRLEEAERLMSHIPGGPGLSVL 636

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           Q+LLGAC +HG+ +MG+  A+ L   +P     Y+LM+N+Y+  G+W+  AK  KRM+  
Sbjct: 637 QSLLGACRVHGNVDMGERVADALMEMEPTESGSYVLMSNLYAEIGKWEMVAKVRKRMRVK 696

Query: 591 GVDKETGISWIEI-----EKQVHSFVVDDKMHPQADTI 623
           GV KE G SW+++        +H F   D  HPQ++ I
Sbjct: 697 GVKKEVGFSWVDVGGIDSSLSLHGFSSGDTSHPQSEAI 734



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/547 (26%), Positives = 263/547 (48%), Gaps = 41/547 (7%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           ++N  + +   ++ A  G+  LG  +H   I          ++   N T++ NSL++ Y 
Sbjct: 61  INNIDEFTVANALKACRGYPLLGSQIHGFSI----------IHEFVNVTIVSNSLMNMYC 110

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K  Q   A+ +F+++   D VSWNT++SG  +  E    F     S  + F   D  ++T
Sbjct: 111 KSGQFCKALCIFENLTHPDIVSWNTVLSG-CQTSEDAFSFACKMNSSGVVF---DAVTYT 166

Query: 161 IILSACDR--SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
            +LS C R      L+   +H  +   G++ EV VGNALI+ Y + G     R+VF EM+
Sbjct: 167 TVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMK 226

Query: 219 VRNVITWTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            R++++W A+ISG  Q  +Y  E + +F++M  G +  + +++ S+V AC   + L   R
Sbjct: 227 TRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELAR 286

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QIHG+  K   +  + + + L+  Y KC  +EDA  +F+   E + VS T ++     + 
Sbjct: 287 QIHGLSIKTRHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMI-----SI 341

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
            E EA+  F +M   G+  +      ++    +   +  GK +H    K+ F+S   V N
Sbjct: 342 DEAEAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCN 401

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            +I MY+K   ++DS+KVF  +  ++ ++WN++I+ F  +G   +A+  +    +E  +P
Sbjct: 402 SIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES-KP 460

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR------ISPRAEHYACVVDMVGRAGLL 511
              +F S+L+A      V+     LK     H       ++      + ++DM  + G +
Sbjct: 461 NQYSFGSILNAIGAAEDVS-----LKYGQRCHSQIIKLGLNTDPIVSSALLDMYAKRGSI 515

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPDSPAPYILMAN 569
            E++      P +     W  ++ A + HGD E  M  +   +    +PDS    I   +
Sbjct: 516 CESQKVFVETPQQSQ-FAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDS----ITFLS 570

Query: 570 IYSCSGR 576
           I +  GR
Sbjct: 571 ILTACGR 577


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 312/565 (55%), Gaps = 11/565 (1%)

Query: 92  WN-----SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           WN     SL+  Y +      A  LFDDMP RD  SWN M+SG ++NG            
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE- 306

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L   +++  +   IL  C +      + +IH  V   G E ++ V NALI  Y K G+
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RK F +M + +V++W ++I+   QN         FVKM L    P+ LT +S    
Sbjct: 367 LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 267 CSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            +  +     R +HG + +   L  D+ I +A++DMY+K G ++ A ++FE     D +S
Sbjct: 427 VAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVIS 486

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
              ++ G+AQNG   EA++++ KM++   EI PN  +  ++L  +    +L  G +IH  
Sbjct: 487 WNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGR 545

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IK++   + FV   LI++Y KCG L D++ +F ++   +SV+WN++I+    HG+  K 
Sbjct: 546 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKT 605

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L+L+ EM  EGV+P  VTF+SLL ACSH G V +G    + M E + I P  +HY C+VD
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVD 664

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L  A  FI+ MP++PD  +W ALLGAC IHG+ E+GK+A+++LF     +   
Sbjct: 665 LLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGY 724

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L++NIY+  G+W+   K     +E G+ K  G S IE+ ++V  F   ++ HP+   I
Sbjct: 725 YVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEI 784

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L  L   M   GY+P+  F+L 
Sbjct: 785 YEELRVLTAKMKSLGYIPDYSFVLQ 809



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 250/487 (51%), Gaps = 14/487 (2%)

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +P +D  +WN+M+S ++ NG F    G F + L +   + D  +F  +L AC     
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---- 229

Query: 172 SLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           +LV  + IHC  +  G++  V V  +LI  Y + G +   R +F +M  R++ +W A+IS
Sbjct: 230 TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS 289

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL+QN    + L +  +M L  I  N +T +S +  C  L  +     IH  + K  L+ 
Sbjct: 290 GLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF 349

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           DL + +AL++MY+K G++EDA + F+     D VS   I+  + QN     A   FVKM 
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDL 409
             G + D   + ++  +          + +H  I++  +   +  + N +++MY+K G L
Sbjct: 410 LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL 469

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHA 468
           + + KVF  +  ++ +SWN++I  +A++G   +A+E+Y+ M + + + P   T++S+L A
Sbjct: 470 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529

Query: 469 CSHVGLVNKGMEFLKSM--TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            +HVG + +GM+    +  T +H     A    C++D+ G+ G L++A S   ++P +  
Sbjct: 530 YAHVGALQQGMKIHGRVIKTNLHLDVFVA---TCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 527 VLVWQALLGACSIHGDSEMG-KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           V  W A++    IHG +E   K   E L          ++ + +  S SG  +E     +
Sbjct: 587 V-TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 586 RMKEMGV 592
            M+E G+
Sbjct: 646 LMQEYGI 652



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 187/383 (48%), Gaps = 19/383 (4%)

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           D S  +  +K +H L+ + G  + + +   L+  Y   G  S  R  F ++  ++V  W 
Sbjct: 127 DSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWN 186

Query: 227 AVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           ++IS  V N  + E +  F ++ L   I P+  T+   + AC     L +GR+IH   +K
Sbjct: 187 SMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRKIHCWAFK 243

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L  Q ++ + ++L+ MYS+ G    A  +F+     D  S   ++ G  QNG   +A+ +
Sbjct: 244 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
             +M   GI+++   V ++L V      +     IH  +IK     + FV+N LINMY+K
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK 363

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G+LED+ K F +M   + VSWNS+IAA+ ++ +   A   + +M+L G +P  +T +SL
Sbjct: 364 FGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL 423

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSFI 518
                   +V +  +  K+   VH    R             VVDM  + GLL  A    
Sbjct: 424 ------ASIVAQSRD-CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVF 476

Query: 519 ERMPVKPDVLVWQALLGACSIHG 541
           E +PVK DV+ W  L+   + +G
Sbjct: 477 EIIPVK-DVISWNTLITGYAQNG 498



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 109/227 (48%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           VI N+++  Y K   + +A K+F+ +P++D +SWNT+++G+ +NG        +K   E 
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                +Q ++  IL A            IH  V       +V V   LI  Y KCG    
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F ++   + +TW A+IS    +   E+ LKLF +M    + P+ +T++S + ACS 
Sbjct: 574 AMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
              + EG+    ++ +  ++  L     ++D+  + G +E A+   +
Sbjct: 634 SGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIK 680



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           EID N +      F   T     K +H+L++ +    + F++  L+N+Y+  GD+  S  
Sbjct: 119 EIDFNFL------FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRC 172

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALE-LYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            F ++  ++  +WNSMI+A+  +G+  +A+   Y+ + +  + P   TF  +L AC  + 
Sbjct: 173 TFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL- 231

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
                ++  K      ++  +   +  A ++ M  R G    ARS  + MP + D+  W 
Sbjct: 232 -----VDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWN 285

Query: 532 ALLGACSIHGDS 543
           A++     +G++
Sbjct: 286 AMISGLIQNGNA 297


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 326/601 (54%), Gaps = 12/601 (1%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L + A+E    LG  +H   +K     D + V N        N+L+  Y KC  + NA 
Sbjct: 48  VLPVCAREREIGLGKGVHGWAVKL--RLDKELVLN--------NALMDMYSKCGCITNAQ 97

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDR 168
            +F     ++ VSWNTMV GF   G+    F   ++ L  G   + D+ +    +  C  
Sbjct: 98  MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                  K +HC      +     V NA + SY KCGS S  ++VF  +R + V +W A+
Sbjct: 158 ESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 217

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G  Q+      L   ++M +  + P+S T  S + ACS L++L  G+++HG + +  L
Sbjct: 218 IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 277

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + DL +  +++ +Y  CG +     +F+  E+   VS   ++ G+ QNGF + A+ +F +
Sbjct: 278 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 337

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           MV  GI++    +  V G   +  SL LG++ H+  +K     + F+   LI+MY+K G 
Sbjct: 338 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 397

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +  S KVF+ +  +++ SWN+MI  +  HG   +A++L+EEM+  G  P D+TFL +L A
Sbjct: 398 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 457

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMPVKPDV 527
           C+H GL+++G+ +L  M     + P  +HYACV+DM+GRAG L +A R   E M  + DV
Sbjct: 458 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 517

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            +W++LL +C IH + EMG+  A KLF  +P+ P  Y+L++N+Y+  G+W++  K  +RM
Sbjct: 518 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 577

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            EM + K+ G SWIE+ ++V SFVV ++     + I  + + L   +   GY P+   + 
Sbjct: 578 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 637

Query: 648 H 648
           H
Sbjct: 638 H 638



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 195/429 (45%), Gaps = 7/429 (1%)

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL---GFYQLDQASFTIILSACDRSELSLV 174
           R+ VSWN+M+  F  NG  +  F      +E    G +  D A+   +L  C R     +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            K +H        ++E+ + NAL+  Y KCG  ++ + +F     +NV++W  ++ G   
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 235 NQLYEEGLKLFVKMHLGL--INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
                    +  +M  G   +  + +T L++V  C     L   +++H    K     + 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +A +  Y+KCGS+  A ++F         S   ++ G AQ+     ++   ++M  +
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+  D   V ++L       SL LGK++H  II++    + FV   ++++Y  CG+L   
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 300

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +F  M  ++ VSWN++I  + ++G   +AL ++ +M L G++   ++ + +  ACS +
Sbjct: 301 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 360

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
             +  G E   +    H +   A     ++DM  + G + ++      +  K     W A
Sbjct: 361 PSLRLGRE-AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTA-SWNA 418

Query: 533 LLGACSIHG 541
           ++    IHG
Sbjct: 419 MIMGYGIHG 427


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 284/489 (58%), Gaps = 1/489 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC +S+    ++ IH  +    +  +  + N+LI  Y KCGS     KVF +MR
Sbjct: 54  YHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++++WT++I+G  QN +  E + L   M  G   PN  T+ S + A         G Q
Sbjct: 114 NKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGGQ 173

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH +  K     D+ + SAL+DMY++CG ++ A  +F+  +  +GVS   ++ GFA+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E A+ +F +M + G E      S++        +L  GK +H+ +IKS      FV N 
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNT 293

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +++MY+K G + D+ KVF R+  ++ V+WNSM+ AFA++G G +A+  +EEM+  G+   
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            ++FL +L ACSH GLV +G  +   M + + + P  EHY  VVD++GRAGLL  A  FI
Sbjct: 354 QISFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI 412

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
            +MP++P   VW ALL AC +H ++++G++AA+ +F   PD   P +L+ NIY+ +G W 
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             A+  K MK  GV KE   SW+EIE  VH FV +D  HP+A+ I+ +  E+   +  EG
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 639 YVPNKRFIL 647
           YVP+  ++L
Sbjct: 533 YVPDMDYVL 541



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 167/303 (55%), Gaps = 13/303 (4%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G + P    Y + + AC+  + L + R+IH  L       D  ++++L+ +Y KCGSV +
Sbjct: 45  GELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVE 104

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+     D VS T ++ G+AQN    EA+ L   M+K   + +    +++L   G 
Sbjct: 105 AHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGA 164

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
               G+G QIH+L +K D+  + +V + L++MY++CG ++ +  VF ++  +N VSWN++
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ FAR G+G  AL ++ EM+  G E T  T+ S+  A + +G + +G          H 
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQG-----KWVHAHM 279

Query: 491 ISPRAEHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           I  R +  A V    +DM  ++G +I+AR   ER+ +  D++ W ++L A + +G   +G
Sbjct: 280 IKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYG---LG 335

Query: 547 KYA 549
           K A
Sbjct: 336 KEA 338



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 174/352 (49%), Gaps = 8/352 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  +  A K+FD M  +D VSW ++++G+ +N       G     L+ G +
Sbjct: 90  NSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRF 148

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L A      S +   IH L   C + E+V VG+AL+  Y +CG       
Sbjct: 149 KPNGFTFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  +N ++W A+ISG  +    E  L +F +M          TY S   A +G+ A
Sbjct: 209 VFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGA 268

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+ +H  + K   +    + + ++DMY+K GS+ DA ++FE     D V+   +L  
Sbjct: 269 LEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-IHSLIIKSDFTS 391
           FAQ G  +EA+  F +M K+GI +  N +S  L +    +  GL K+  H   +  ++  
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYL--NQIS-FLCILTACSHGGLVKEGKHYFDMIKEYNL 385

Query: 392 NPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
            P + +   ++++  + G L  ++    +M    + + W +++AA   H N 
Sbjct: 386 EPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNA 437


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 305/562 (54%), Gaps = 55/562 (9%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W +++  Y++ +++ +A KLF++MP ++ VSWNTM+ G+ +NG  D     F++  E 
Sbjct: 116 VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER 175

Query: 150 GFYQLDQASFTIILSACDRSELS--LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                +  +   +L+ C R E +  L  +M          E +V    A+I    K G  
Sbjct: 176 NVVSWN--TVMSMLAQCGRIEEARRLFDRMP---------ERDVISWTAMIAGLSKNGRI 224

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R +F  M  RNV++W A+I+G  QN   +E L LF +M                   
Sbjct: 225 DEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMP------------------ 266

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                                + DL   + ++    + G +  A ++F    + + +S T
Sbjct: 267 ---------------------ERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWT 305

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            ++ G  Q G  EEA+++F +M+   G + +     +VLG       LG G+Q+H +I K
Sbjct: 306 TMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISK 365

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKAL 444
           + +  + FV + LINMYSKCG+L  + K+F     + R+ VSWN +IAA+A HG G +A+
Sbjct: 366 TVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAI 425

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
             ++EM+  G +P DVT++ LL ACSH GLV +G+++   + +   I  R +HYAC+VD+
Sbjct: 426 NFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDL 485

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
            GRAG L EA  FIER+  KP   VW ALL  C++H + ++GK AA+KL   +P++   Y
Sbjct: 486 CGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTY 545

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+ +G+W+E A+   +MK+ G+ K+ G SWIE+  +VH FVV DK H Q+  I+
Sbjct: 546 LLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIY 605

Query: 625 GVLAELLRLMIDEGYVPNKRFI 646
            +L +L   M   GY PN  FI
Sbjct: 606 SLLRDLHSKMKKAGYEPNNDFI 627



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 181/379 (47%), Gaps = 47/379 (12%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK------- 247
           N +IT+  K G     R++F EMR  +VITWT VISG ++  + EE  +LF +       
Sbjct: 56  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNV 115

Query: 248 -----MHLGLINPNSLTYLSSVM------ACSGLQALCEGRQIHG------ILWKLALQS 290
                M  G I  N ++    +              + +G   +G       L++   + 
Sbjct: 116 VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER 175

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           ++   + +M M ++CG +E+A ++F+   E D +S T ++ G ++NG  +EA  LF +M 
Sbjct: 176 NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMP 235

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           +  +     M++       +D +L L +++     + D  S   +  GLI    + GDL 
Sbjct: 236 ERNVVSWNAMITGYAQNLRLDEALDLFERMP----ERDLPSWNTMITGLI----QNGDLR 287

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHAC 469
            + K+F+ M  +N +SW +MI    + G   +AL+++  M    G +P   TF+S+L AC
Sbjct: 288 RARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGAC 347

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARS-FIERMP 522
           S++  + +G        +VH+I  +  +       + +++M  + G L  AR  F + M 
Sbjct: 348 SNLAGLGEGQ-------QVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMT 400

Query: 523 VKPDVLVWQALLGACSIHG 541
            + D++ W  ++ A + HG
Sbjct: 401 SQRDLVSWNGIIAAYAHHG 419



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 20/119 (16%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDD--MPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           ++T + ++L++ Y KC ++  A K+FDD     RD VSWN +++ +  +G       FFK
Sbjct: 370 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFK 429

Query: 145 RSLELGFYQLDQASFTIILSACDRSEL---------------SLVSKMIH--CLVYLCG 186
              + GF + D  ++  +LSAC  + L               S++ +  H  CLV LCG
Sbjct: 430 EMRKSGF-KPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCG 487


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 198/601 (32%), Positives = 326/601 (54%), Gaps = 12/601 (1%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            +L + A+E    LG  +H   +K     D + V N        N+L+  Y KC  + NA 
Sbjct: 653  VLPVCAREREIGLGKGVHGWAVKL--RLDKELVLN--------NALMDMYSKCGCITNAQ 702

Query: 110  KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDR 168
             +F     ++ VSWNTMV GF   G+    F   ++ L  G   + D+ +    +  C  
Sbjct: 703  MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 762

Query: 169  SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                   K +HC      +     V NA + SY KCGS S  ++VF  +R + V +W A+
Sbjct: 763  ESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 822

Query: 229  ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
            I G  Q+      L   ++M +  + P+S T  S + ACS L++L  G+++HG + +  L
Sbjct: 823  IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 882

Query: 289  QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            + DL +  +++ +Y  CG +     +F+  E+   VS   ++ G+ QNGF + A+ +F +
Sbjct: 883  ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 942

Query: 349  MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
            MV  GI++    +  V G   +  SL LG++ H+  +K     + F+   LI+MY+K G 
Sbjct: 943  MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 1002

Query: 409  LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
            +  S KVF+ +  +++ SWN+MI  +  HG   +A++L+EEM+  G  P D+TFL +L A
Sbjct: 1003 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 1062

Query: 469  CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMPVKPDV 527
            C+H GL+++G+ +L  M     + P  +HYACV+DM+GRAG L +A R   E M  + DV
Sbjct: 1063 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 1122

Query: 528  LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
             +W++LL +C IH + EMG+  A KLF  +P+ P  Y+L++N+Y+  G+W++  K  +RM
Sbjct: 1123 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 1182

Query: 588  KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
             EM + K+ G SWIE+ ++V SFVV ++     + I  + + L   +   GY P+   + 
Sbjct: 1183 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 1242

Query: 648  H 648
            H
Sbjct: 1243 H 1243



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/483 (26%), Positives = 219/483 (45%), Gaps = 20/483 (4%)

Query: 7   FLKLNSNFPFCSSLVSPFIT--KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP 64
           FL+  SNF     L   F T  + + D  SS+   +L     +  LL  S K     +G 
Sbjct: 401 FLRRISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREA-LGLLLQASGKRKDIEMGR 459

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
            +H                 + N  V+   +++ Y  C    ++  +FD +  ++   WN
Sbjct: 460 KIHQLV---------SGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWN 510

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
            ++S + RN  +D     F   +       D  ++  ++ AC       +   +H LV  
Sbjct: 511 AVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK 570

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G  E+V VGNAL++ Y   G  +   ++F  M  RN+++W ++I     N   EE   L
Sbjct: 571 TGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLL 630

Query: 245 FVKMHL----GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
             +M      G   P+  T ++ +  C+  + +  G+ +HG   KL L  +L + +ALMD
Sbjct: 631 LGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMD 690

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSKCG + +A  IF+     + VS   ++ GF+  G       +  +M+  G ++  + 
Sbjct: 691 MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADE 750

Query: 361 VSAVLGVFGV---DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           V+ +L    V   ++ L   K++H   +K +F  N  V N  +  Y+KCG L  + +VF 
Sbjct: 751 VT-ILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFH 809

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  +   SWN++I   A+  +   +L+ + +MK+ G+ P   T  SLL ACS +  +  
Sbjct: 810 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRL 869

Query: 478 GME 480
           G E
Sbjct: 870 GKE 872



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 184/383 (48%), Gaps = 20/383 (5%)

Query: 127 VSGFLRNGEFDMGFGFFKR------SLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +S F   G+ D  F   +       S    F  + +A   ++ ++  R ++ +  K+   
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 464

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +        +  +   +IT Y  CGS    R VF  +R +N+  W AVIS   +N+LY+E
Sbjct: 465 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 524

Query: 241 GLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
            L+ F++M     + P+  TY   + AC+G+  +  G  +HG++ K  L  D+ + +AL+
Sbjct: 525 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALV 584

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK----AGIE 355
             Y   G V DA Q+F+   E + VS   ++  F+ NGF EE+  L  +M++        
Sbjct: 585 SFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFM 644

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  VL V   +  +GLGK +H   +K        +NN L++MYSKCG + ++  +
Sbjct: 645 PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 704

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPTDVTFLSLLHACSHVG 473
           F     +N VSWN+M+  F+  G+     ++  +M   G  V+  +VT L+ +  C H  
Sbjct: 705 FKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH-- 762

Query: 474 LVNKGMEFLKSMTEVHRISPRAE 496
                  FL S+ E+H  S + E
Sbjct: 763 -----ESFLPSLKELHCYSLKQE 780



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 213/456 (46%), Gaps = 7/456 (1%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL- 149
            + N+L+SFY     + +A++LFD MP R+ VSWN+M+  F  NG  +  F      +E  
Sbjct: 579  VGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEEN 638

Query: 150  --GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
              G +  D A+   +L  C R     + K +H        ++E+ + NAL+  Y KCG  
Sbjct: 639  GDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCI 698

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVM 265
            ++ + +F     +NV++W  ++ G            +  +M  G   +  + +T L++V 
Sbjct: 699  TNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVP 758

Query: 266  ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             C     L   +++H    K     +  + +A +  Y+KCGS+  A ++F         S
Sbjct: 759  VCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNS 818

Query: 326  MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
               ++ G AQ+     ++   ++M  +G+  D   V ++L       SL LGK++H  II
Sbjct: 819  WNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFII 878

Query: 386  KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
            ++    + FV   ++++Y  CG+L     +F  M  ++ VSWN++I  + ++G   +AL 
Sbjct: 879  RNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALG 938

Query: 446  LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            ++ +M L G++   ++ + +  ACS +  +  G E   +    H +   A     ++DM 
Sbjct: 939  VFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-AHAYALKHLLEDDAFIACSLIDMY 997

Query: 506  GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             + G + ++      +  K     W A++    IHG
Sbjct: 998  AKNGSITQSSKVFNGLKEK-STASWNAMIMGYGIHG 1032


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/476 (37%), Positives = 272/476 (57%), Gaps = 3/476 (0%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + IH  + LCG+       N L++ Y KCG     R +F  +  R V++W+A+I     +
Sbjct: 5   RRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALH 64

Query: 236 QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA--LQSDL 292
              +E L LF +M + G + PN++T+     AC  ++ L +GR+IH +         S+ 
Sbjct: 65  GRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNA 124

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            +E+AL++MY +CGS+E+A ++F+  +  D  S T ++    +N    EA++LF +M   
Sbjct: 125 ILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLE 184

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           GI      +++VL       +L +GKQIHS +  S F S+      L++MY+KCG LE S
Sbjct: 185 GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECS 244

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            KVF+ M  RNSVSW +MIAA A+HG G +ALEL++EM LEG+     TF+ +L ACSH 
Sbjct: 245 SKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHA 304

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GL+ + +EF  SM E + I+P   HY   +D +GRAG L +A   I  MP  P+ L W+ 
Sbjct: 305 GLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKT 364

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL AC IH  +E     AE L    P+    Y L+ N+Y+ +GR+ ++ +  K M + G+
Sbjct: 365 LLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGL 424

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            K  G S+IE++ +VH FV  D+ HP  D I   L +L   M + GYVPN + +LH
Sbjct: 425 KKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 195/411 (47%), Gaps = 17/411 (4%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            AT+  N L+S Y KC  +  A  +F+ +  R  VSW+ M+  +  +G        F R 
Sbjct: 18  RATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRM 77

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYFKC 204
              G  + +  +FT + +AC   E     + IH L    G        + NAL+  Y +C
Sbjct: 78  RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRC 137

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           GS    RKVF  M   +  +WT++I+   +N    E L+LF +M+L  I P S+T  S +
Sbjct: 138 GSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVL 197

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+   AL  G+QIH  L      S +  ++AL+DMY+KCGS+E + ++F   E  + V
Sbjct: 198 NACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSV 257

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----I 380
           S T ++   AQ+G  +EA++LF +M   G+  D      VL      +  GL K+     
Sbjct: 258 SWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRAC---SHAGLIKESLEFF 314

Query: 381 HSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
           HS++   D+   P   +    ++   + G L+D+ ++   M     +++W +++ A   H
Sbjct: 315 HSMV--EDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIH 372

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLL-HACSHVGLVNKGMEFLKSMTE 487
               +A ++ E   L  + P D    +LL +  +  G     M   K MT+
Sbjct: 373 SQAERATKVAE--LLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTD 421



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 7/274 (2%)

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           EGR+IH  L           ++ L+ MY+KCG +++A  IF    E   VS + ++  +A
Sbjct: 3   EGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYA 62

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSD--FT 390
            +G  +EA+ LF +M   G  ++PN +  + V    GV   L  G++IH+L + S    +
Sbjct: 63  LHGRGQEALLLFHRMRNDG-RVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKS 121

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           SN  + N L+NMY +CG LE++ KVF  M   ++ SW SMI A   +    +ALEL+  M
Sbjct: 122 SNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRM 181

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            LEG+ PT VT  S+L+AC+  G +  G + + S  +             ++DM  + G 
Sbjct: 182 NLEGIPPTSVTLASVLNACACSGALKVGKQ-IHSRLDASGFHSSVLAQTALLDMYAKCGS 240

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           L  +      M  +  V  W A++ A + HG  +
Sbjct: 241 LECSSKVFTAMETRNSV-SWTAMIAALAQHGQGD 273


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/634 (31%), Positives = 324/634 (51%), Gaps = 47/634 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+  AK G         A   + F+   + N++         N+LLS       + 
Sbjct: 51  LNHLLTAYAKSGRL-------ARARRVFDEMPDPNLFTR-------NALLSALAHSRLVP 96

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSA 165
           +  +LF  MP RD VS+N +++GF   G        ++  L     +  + + + +I+ A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--- 222
              S+ +L    +HC V   G+     VG+ L+  Y K G     R+VF EM  + V   
Sbjct: 157 SALSDRAL-GHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMY 215

Query: 223 ----------------------------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
                                       ITWT +++GL QN L  E L +F +M    + 
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVG 275

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            +  T+ S + AC  L A  EG+QIH  + +   + ++ + SAL+DMYSKC S+  A  +
Sbjct: 276 IDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAV 335

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      + +S T ++VG+ QN   EEA++ F +M   GI+ D   + +V+       SL
Sbjct: 336 FRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASL 395

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G Q H L + S       V+N L+ +Y KCG +ED+ ++F  M+  + VSW +++  +
Sbjct: 396 EEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGY 455

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G   + ++L+E+M + G++P  VTF+ +L ACS  GLV KG ++  SM + H I P 
Sbjct: 456 AQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPI 515

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HY C++D+  R+G   EA  FI++MP  PD   W  LL +C + G+ E+GK+AAE L 
Sbjct: 516 DDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLL 575

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P +PA Y+L+ ++++  G+W E A   + M++  V KE G SWI+ + +VH F  DD
Sbjct: 576 ETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 635

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP +  I+  L  L   M +EGY P+   +LH
Sbjct: 636 QSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLH 669


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/584 (32%), Positives = 313/584 (53%), Gaps = 35/584 (5%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y   + + ++++LF+ +     ++W +++  +  +G      G F   L  G Y  D  
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYP-DHN 107

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG------------ 205
            F  +L +C       + + +H  +   G + ++  GNAL+  Y K              
Sbjct: 108 VFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGA 167

Query: 206 --------------------SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
                               S  S RK+F  M  +++++W  +I+G  +N LYEE L++ 
Sbjct: 168 GEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMI 227

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
            +M    + P+S T LSSV+        +  G++IHG   +  L +D+ + S+L+DMY+K
Sbjct: 228 REMGGANLKPDSFT-LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           C  V D+ ++F    E DG+S   I+ G  QNG  +E ++ F +M+ A I+      S++
Sbjct: 287 CTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           +      T+L LGKQ+H  I ++ F  N F+ + L++MY+KCG++  + ++F RM  R+ 
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           VSW +MI   A HG    A+EL+E+M+ EG++P  V F+++L ACSH GLV++  ++  S
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNS 466

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           MT    I+P  EHYA V D++GRAG L EA  FI  M + P   +W  LL AC +H + +
Sbjct: 467 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNID 526

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           M +  A ++    P++   YIL+ANIYS + RWKE AK    M+ +G+ K    SWIE++
Sbjct: 527 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 586

Query: 605 KQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            +V++F+  D+ HP  + I   +  L+ LM  EGYVP+   + H
Sbjct: 587 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH 630



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 127/234 (54%), Gaps = 24/234 (10%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y KC ++ ++ ++F  +  RD +SWN++++G ++NG FD G  FF++ L + 
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML-MA 334

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +    SF+ I+ AC       + K +H  +   G++E + + ++L+  Y KCG+  + 
Sbjct: 335 KIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 394

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           +++F  MR+R++++WTA+I G   +    + ++LF +M    I PN + +++ + ACS  
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACS-- 452

Query: 271 QALCEGRQIHGIL----WKL--ALQSDLCIE------SALMDMYSKCGSVEDAW 312
                    HG L    WK   ++  D  I       +A+ D+  + G +E+A+
Sbjct: 453 ---------HGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAY 497



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S ++   A     HLG  LH     T   FD +N++       I +SL+  Y KC  +R 
Sbjct: 344 SSIMPACAHLTTLHLGKQLHGYI--TRNGFD-ENIF-------IASSLVDMYAKCGNIRT 393

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD M +RD VSW  M+ G   +G+       F++ +E    + +  +F  +L+AC 
Sbjct: 394 AKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ-METEGIKPNHVAFMAVLTACS 452

Query: 168 RSEL 171
              L
Sbjct: 453 HGGL 456


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 305/537 (56%), Gaps = 7/537 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y+KC  + +A  +FD MP RD +SWN M+SG+  N     G   F    E  F 
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREF-FV 292

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T ++SAC+      + + +H  V   G+  EV+V N+LI  +   G       
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  +++++WTA+ISG  +N L E+ ++ +  M    + P+ +T  S + AC+GL  
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL 412

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G  +H    +  L S + + ++L+DMYSKC  ++ A ++F      + +S T I++G
Sbjct: 413 LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              N    EA+  F +M+   + + PN V+  +VL       +L  GK+IH+  +++   
Sbjct: 473 LRLNYRSFEALFFFQQMI---LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N L++MY +CG +E +   F+    ++  SWN ++  +A+ G G  A+EL+ +M
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               V P ++TF SLL ACS  G+V  G+E+ +SM     I+P  +HYA VVD++GRAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI++MP+ PD  +W ALL AC I+ + E+G+ AA+ +F     S   YIL+ N+
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           Y+ SG+W E A+  K M+E  +  + G SW+E+  QVH+F+  D  HPQ   I+ VL
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 199/381 (52%), Gaps = 2/381 (0%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +++ ++  +L  C+    +     +H  V        V +GNAL++ + + G       V
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYV 151

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           FG+M  R++ +W  ++ G  +   ++E L L+ +M    I P+  T+   +  C GL  L
Sbjct: 152 FGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDL 211

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GR++H  + +   +SD+ + +AL+ MY KCG +  A  +F+     D +S   ++ G+
Sbjct: 212 ARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGY 271

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            +N    E ++LF  M +  ++ D   +++V+          LG+++H  +IK+ F +  
Sbjct: 272 FENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEV 331

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            VNN LI M+S  G  +++  VFS+M  ++ VSW +MI+ + ++G   KA+E Y  M+ E
Sbjct: 332 SVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHE 391

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           GV P ++T  S+L AC+ +GL++KG+  L    +   ++        ++DM  +   + +
Sbjct: 392 GVVPDEITIASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 514 ARSFIERMPVKPDVLVWQALL 534
           A     R+P K +V+ W +++
Sbjct: 451 ALEVFHRIPNK-NVISWTSII 470



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 143/354 (40%), Gaps = 68/354 (19%)

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E+A+     M +  + ++     A+L +     +   G ++HS + K+       + N L
Sbjct: 76  EKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++M+ + GDL ++  VF +MA R+  SWN ++  +A+ G   +AL LY  M   G+ P  
Sbjct: 136 LSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDV 195

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD----MVGRAGLLIEAR 515
            TF  +L  C  +  + +G E       +H I    E    VV+    M  + G +  AR
Sbjct: 196 YTFPCVLRTCGGLPDLARGRE-----VHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 516 SFIERMP----------------------------------VKPDVLVWQALLGACSIHG 541
              +RMP                                  V PD++   +++ AC   G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 542 DSEMGK----YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           D  +G+    Y  +  F+A+       I M   +S  G W E      +M+   +     
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQM---HSSVGCWDEAEMVFSKMEFKDL----- 362

Query: 598 ISWIEI----------EKQVHSFVV--DDKMHPQADTIHGVLAELLRL-MIDEG 638
           +SW  +          EK V ++ +   + + P   TI  VL+    L ++D+G
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +LS  A+ G    G  +HA  ++T   FD      +PNA      LL  Y++C
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG----FLPNA------LLDMYVRC 545

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M  A   F+    +D  SWN +++G+ + G+  +    F + +E      D+ +FT +
Sbjct: 546 GRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDV-NPDEITFTSL 603

Query: 163 LSACDRS 169
           L AC RS
Sbjct: 604 LCACSRS 610


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/495 (35%), Positives = 292/495 (58%), Gaps = 1/495 (0%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  ++   L  C + +     K +HC +   G   ++   N L+  Y K        K
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM  RN I++  +I G  ++  + E ++LFV++H  ++ PN  T+ S + AC+ ++ 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVL-PNQFTFASVLQACATMEG 153

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G QIH  + K+ L SD+ + +ALMD+Y+KCG +E++ ++F  +   + V+   ++VG
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             Q G  E+A++LF+ M++  ++      S+ L       +L  G QIHSL +K+ F  +
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 273

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY+KCG ++D+  VF  M  ++ VSWN+MI+ ++ HG G +AL ++++M+ 
Sbjct: 274 IVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQE 333

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             V+P  +TF+ +L AC++ GL+++G  +  SM + H I P  EHY C+V ++GR G L 
Sbjct: 334 TEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLD 393

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           +A   I+ +P +P V+VW+ALLGAC IH D E+G+ +A+++   +P   A ++L++N+Y+
Sbjct: 394 KAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYA 453

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            + RW   A   K MK  GV KE G+SWIE +  VHSF V D  HP+   I+G+L  L  
Sbjct: 454 TAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHM 513

Query: 633 LMIDEGYVPNKRFIL 647
                GY+PN   +L
Sbjct: 514 KTKKAGYIPNYNVVL 528



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/374 (32%), Positives = 195/374 (52%), Gaps = 14/374 (3%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN LL+ Y+K D + +A KLFD+MP R+T+S+ T++ G+  +  F      F R   L  
Sbjct: 76  WNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVR---LHR 132

Query: 152 YQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             L +Q +F  +L AC   E   +   IHC V   G   +V V NAL+  Y KCG   + 
Sbjct: 133 EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENS 192

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            ++F E   RN +TW  VI G VQ    E+ L+LF+ M    +    +TY S++ AC+ L
Sbjct: 193 MELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 252

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G QIH +  K     D+ + +AL+DMY+KCGS++DA  +F+   + D VS   ++
Sbjct: 253 AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMI 312

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK--SD 388
            G++ +G   EA+++F KM +   E+ P+ ++ V GV     + GL  Q  +       D
Sbjct: 313 SGYSMHGLGREALRIFDKMQET--EVKPDKLTFV-GVLSACANAGLLDQGQAYFTSMIQD 369

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARHGNGFKALE 445
               P + +   ++ +  + G L+ ++K+   +  + SV  W +++ A   H N  +   
Sbjct: 370 HGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH-NDIELGR 428

Query: 446 LYEEMKLEGVEPTD 459
           +  +  LE +EP D
Sbjct: 429 ISAQRVLE-MEPQD 441



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/250 (29%), Positives = 120/250 (48%), Gaps = 18/250 (7%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           VL N    + +L   A     +LG  +H   IK            + +   + N+L+  Y
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKI----------GLHSDVFVSNALMDVY 183

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC +M N+++LF + P R+ V+WNT++ G ++ G+ +     F   LE    Q  + ++
Sbjct: 184 AKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRV-QATEVTY 242

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           +  L AC           IH L     +++++ V NALI  Y KCGS    R VF  M  
Sbjct: 243 SSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNK 302

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR-- 277
           ++ ++W A+ISG   + L  E L++F KM    + P+ LT++  + AC+    L +G+  
Sbjct: 303 QDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAY 362

Query: 278 -----QIHGI 282
                Q HGI
Sbjct: 363 FTSMIQDHGI 372


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 317/605 (52%), Gaps = 23/605 (3%)

Query: 55  AKEGHFHLGP--------SLHASFIKTFEPFDNQNVYNVPNATVIW-NSLLSFYLKCDQM 105
           A   HFH  P         +  S +++  PF        P    +W  +L+  Y      
Sbjct: 7   ASSPHFHPIPLIVRNSLQWISNSTLQSNPPF-------TPEGPSVWATNLIKSYFDKGLT 59

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--IL 163
           R A  LF+++P RD V+W  M+ GF     +   +  F   L     ++   +FT+  +L
Sbjct: 60  REACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR---SEVQPNAFTMSSVL 116

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF-KCGSSSSGRKVFGEMRVRNV 222
            AC   +      + H L    G +  V V NAL+  Y   C +      VF ++ ++  
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++WT +I+G         GL  F +M L  + PNS ++  +  AC+ + +   G+QIH  
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  L  D  + ++++DMY +C  + DA + F    E + ++   ++ G+ ++    E+
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSES 295

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G + +    +++         L  G+Q+H  I++  F  N  + N LI+M
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG + DS K+F  M  R+ VSW +M+  +  HG G +A++L++EM   G++P  + F
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + +L  CSH GLV+KG+++ +SM E + I+P  E Y CVVD++GRAG + EA   +E MP
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            +PD  VW ALLGAC  +  S +G  AA+++   +P+    Y+L++ IY+  G+W E AK
Sbjct: 476 FEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAK 535

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MK M   KE G SWIEI  +V+SFVV  KM P  + +H V+  L+  M D+G V +
Sbjct: 536 MRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDGDVTD 595

Query: 643 KRFIL 647
             +I+
Sbjct: 596 LDYIV 600


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 306/575 (53%), Gaps = 33/575 (5%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
            PN ++  WNS++  Y K   ++ A++LF  MP RDTVSWNTM+S   ++G        F
Sbjct: 175 TPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTF 234

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
                 GF + +  ++  +LSAC           +H  +       +V  G  LI  Y K
Sbjct: 235 LEMWNQGF-RPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAK 293

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG   S R+VF  +   N ++WT++I G+ Q    EE L LF +M    +  +  T  + 
Sbjct: 294 CGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATV 353

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           +  C   + +  G Q+H       L S + + +AL+ MY+KCG V  A   FE     D 
Sbjct: 354 LGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDI 413

Query: 324 VSMTVILVGFAQ-------------------------------NGFEEEAMQLFVKMVKA 352
           +S T ++  F+Q                                G+ EE ++++++M++ 
Sbjct: 414 ISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE 473

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G++ D    S  +        L LG QI +   K  F+SN  V N ++ MYS+CG +E++
Sbjct: 474 GVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEA 533

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            K+FS +  +N VSWN+M+A +A++G G K +E++E+M   G  P  ++++S+L  CSH 
Sbjct: 534 QKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHS 593

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G V++G  +  SMT+ H ISP +EH+ C+VD++GRAG L +A++ I +MP KP+  +W A
Sbjct: 594 GFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGA 653

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL AC IHG++++ + A + L     + P  Y L+ANIYS SG+ +      K M++ GV
Sbjct: 654 LLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGV 713

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            K  G SWIE++ +VH F VDD  HPQ   +H +L
Sbjct: 714 RKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRML 748



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 245/496 (49%), Gaps = 53/496 (10%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM------GFGFFKR 145
           WN+++S +    QMR A KLF+ MP RD+VSWN+M+SG+  NGE +         G+ K 
Sbjct: 73  WNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKL 132

Query: 146 SLEL-GFYQLDQASFTIILSACDRSELSLVSKMIHC-------LVYLCGYEEEVTVGNAL 197
           +L+L GF +     F   +  C   E S++   I C        V+       +   N++
Sbjct: 133 ALQLHGFAE----KFDFGIDTC--VETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSM 186

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           I  Y K GS     ++F +M  R+ ++W  +IS L Q+    E L  F++M      PNS
Sbjct: 187 IYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNS 246

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           +TY S + AC+ +  L  G  +H  + ++    D+     L+DMY+KCG +E A Q+F+ 
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
             E + VS T ++ G AQ GF+EEA+ LF +M +  +  D   ++ VLGV      + +G
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG 366

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKC------------------------------- 406
           +Q+H+  I     S+  V N L+ MY+KC                               
Sbjct: 367 EQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQA 426

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           GD+E + + F +M  RN +SWNSM+A + + G   + L++Y +M  EGV+   +TF + +
Sbjct: 427 GDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSI 486

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+ + ++  G + L +  E    S        VV M  R G + EA+     + +K +
Sbjct: 487 SACADLAVLILGNQIL-AQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-N 544

Query: 527 VLVWQALLGACSIHGD 542
           ++ W A++   + +G 
Sbjct: 545 LVSWNAMMAGYAQNGQ 560



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 51/475 (10%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           +++ +H  +   G +  + + N L+  Y  CG  S   +VFG +   NV +W  +ISG  
Sbjct: 22  IARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFA 81

Query: 234 QNQLYEEGLKLFVKM-HLGLINPNSLT--YL------SSVMACSGLQALCEGRQIHGILW 284
            +    E  KLF KM     ++ NS+   Y       +++ A   L  L    Q+HG   
Sbjct: 82  DSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAE 141

Query: 285 KLALQSDLCIESALMDMYSKC-------------------------------GSVEDAWQ 313
           K     D C+E++++DMY KC                               GSV+ A +
Sbjct: 142 KFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALE 201

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F    E D VS   ++   +Q+GF  E +  F++M   G   +    ++VL        
Sbjct: 202 LFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYD 261

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G  +H+ I++ +   + +   GLI+MY+KCG LE + +VF  +   N+VSW S+I  
Sbjct: 262 LEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGG 321

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
            A+ G   +AL L+ +M+   V     T  ++L  C     ++ G E L + T    +  
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG-EQLHAHTITRGLDS 380

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
                  +V M  + G + +A    E MP++ D++ W A++ A S  GD E     A + 
Sbjct: 381 SVPVANALVTMYAKCGDVWKANHAFELMPIR-DIISWTAMITAFSQAGDVE----KAREY 435

Query: 554 FLAQPDSPA-PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
           F   P+     +  M   Y   G W+E  K   +M   GV  +    WI     +
Sbjct: 436 FDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTD----WITFSTSI 486



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 157/330 (47%), Gaps = 46/330 (13%)

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           S  +  S+  C+ L+++   R++H  L  + L+S + +++ L++MYS CG + DA+++F 
Sbjct: 4   SQKFYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFG 63

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS---------AVLGV 367
                +  S   ++ GFA +G   EA +LF KM +       +M+S         A +  
Sbjct: 64  GIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKA 123

Query: 368 FGVDTSLGLGKQIHSLIIKSDF-----------------------------TSNP--FVN 396
            G    L L  Q+H    K DF                             T NP  F  
Sbjct: 124 SGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCW 183

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N +I  YSK G ++ ++++F++M  R++VSWN+MI+  ++HG G + L  + EM  +G  
Sbjct: 184 NSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFR 243

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-C-VVDMVGRAGLLIEA 514
           P  +T+ S+L AC+ +  +  G         + R+ P  + YA C ++DM  + G L  A
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAHL---HARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           R   + +  + + + W +L+G  +  G  E
Sbjct: 301 RQVFDGL-TEHNAVSWTSLIGGVAQAGFQE 329



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 23/200 (11%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           S+ + +++H+ +I     S+ F+ N L+NMYS CG + D+ +VF  +   N  SWN+MI+
Sbjct: 19  SIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMIS 78

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME------FLKSMT 486
            FA  G   +A +L+E+M     E   V++ S++    H G +   ++      +LK   
Sbjct: 79  GFADSGQMREAEKLFEKMP----ERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLAL 134

Query: 487 EVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           ++H  + + +          V+DM  + G +  A+    R P  P +  W ++     I+
Sbjct: 135 QLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTP-NPSLFCWNSM-----IY 188

Query: 541 GDSEMGKY-AAEKLFLAQPD 559
           G S+ G    A +LF   P+
Sbjct: 189 GYSKYGSVKKALELFAKMPE 208


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 321/569 (56%), Gaps = 25/569 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL++ Y++C   R+A +LFD MP R+ V+W  +V+G+  N +  +G   F   LE+G
Sbjct: 115 VATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG 174

Query: 151 FYQLDQ---ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            Y       A+    L++CD      + K +H      G E   ++GN+L + Y K GS 
Sbjct: 175 RYPSHYTLGATLNACLASCDVD----LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 230

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S  + F  +  +NVITWT +IS   +++   E G+ LF+ M +  + PN  T L+SVM+
Sbjct: 231 DSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFT-LTSVMS 289

Query: 267 CSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             G +  L  G+Q+    +K+  +++L ++++ M +Y + G  ++A ++FE  E+   ++
Sbjct: 290 LCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIIT 349

Query: 326 MTVILVGFAQ-------------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
              ++ G+AQ              GF+  A+ +F  + ++ ++ D    S++L V     
Sbjct: 350 WNAMISGYAQIMDSAKDDLQARSRGFQ--ALTIFRDLKRSVMKPDLFTFSSILSVCSAMM 407

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  G+QIH+  IKS F S+  VN+ L+NMY+KCG ++D+ K F  M  R  V+W SMI+
Sbjct: 408 ALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMIS 467

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            +++HG   +A++L+EEM+L GV P ++TF+SLL ACS+ GLV +   +   M + + I 
Sbjct: 468 GYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIE 527

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P  +HY C++DM  R G + +A SFI+R   +P+  +W +L+  C  HG+ E+  YAA+K
Sbjct: 528 PVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADK 587

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           L   +P     YIL+ N+Y  + RW++ A+  K MK+  V      SWI I+ +V+ F  
Sbjct: 588 LLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRA 647

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +D+ HPQA  ++ +L  LL      GY P
Sbjct: 648 NDRTHPQATELYQLLENLLEKAKAIGYEP 676



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 226/460 (49%), Gaps = 38/460 (8%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQN-----VYNVPNA 88
           +S   L L+ +V+   +L +     H+ LG +L+A           Q       Y   + 
Sbjct: 157 NSQPALGLEVFVE---MLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE-FDMGFGFFKRSL 147
           T + NSL S Y K   + +A++ F  +P ++ ++W TM+S    + E  ++G   F   L
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDML 273

Query: 148 ELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             G    ++ + T ++S C  R +L+L  K +    +  G E  + V N+ +  Y + G 
Sbjct: 274 MDGVMP-NEFTLTSVMSLCGTRLDLNL-GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGE 331

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ------NQLYE-----EGLKLFVKMHLGLINP 255
           +    ++F +M   ++ITW A+ISG  Q      + L       + L +F  +   ++ P
Sbjct: 332 TDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKP 391

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           +  T+ S +  CS + AL +G QIH    K    SD+ + SAL++MY+KCG ++DA + F
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                   V+ T ++ G++Q+G  +EA+QLF +M  AG+   PN ++ V  +    +  G
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR--PNEITFV-SLLSACSYAG 508

Query: 376 LGKQIHSL--IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSM 430
           L ++      ++K ++   P V++   +I+M+ + G +ED+     R     N   W+S+
Sbjct: 509 LVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSL 568

Query: 431 IAAFARHGN---GFKALELYEEMKLEGVEPTDVTFLSLLH 467
           +A    HGN    F A +   E+K +G+E    T++ LL+
Sbjct: 569 VAGCRSHGNMELAFYAADKLLELKPKGIE----TYILLLN 604



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 206/415 (49%), Gaps = 14/415 (3%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +  A +  +L  C  +     ++ +H  +   G   ++ V  +L+ +Y +C ++   R++
Sbjct: 76  VQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRL 135

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  RNV+TWTA+++G   N     GL++FV+M      P+  T  +++ AC     +
Sbjct: 136 FDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDV 195

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+Q+HG   K   +S   + ++L  +Y+K GS++ A + F    E + ++ T ++   
Sbjct: 196 DLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISAC 255

Query: 334 AQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           A++    E  M LF+ M+  G+  +   +++V+ + G    L LGKQ+ +   K    +N
Sbjct: 256 AEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETN 315

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR-----------HGNGF 441
             V N  + +Y + G+ ++++++F +M   + ++WN+MI+ +A+              GF
Sbjct: 316 LPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGF 375

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL ++ ++K   ++P   TF S+L  CS +  + +G +      +   +S    + A +
Sbjct: 376 QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSA-L 434

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           V+M  + G + +A      MP +  V  W +++   S HG  +      E++ LA
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFV-TWTSMISGYSQHGQPQEAIQLFEEMRLA 488


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 329/633 (51%), Gaps = 86/633 (13%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +++S Y     +  A  +F+  P  MRDTV +N M++GF  N +       F +    G
Sbjct: 84  TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 151 FYQLDQASFTIILSACDRSELSLVSK------MIHCLVYLCGYEEEVTVGNALITSYFKC 204
           F + D  +F  +L+      L+LV+         H      G     +V NAL++ Y KC
Sbjct: 144 F-KPDNFTFASVLAG-----LALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKC 197

Query: 205 GSSSS----GRKVFGEMRVRNVITWT--------------------------------AV 228
            SS S     RKVF E+  ++  +WT                                A+
Sbjct: 198 ASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAM 257

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           ISG V    Y+E L++  +M    I  +  TY S + AC+    L  G+Q+H  + +   
Sbjct: 258 ISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR--- 314

Query: 289 QSDLCI--ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF------------- 333
           + D     +++L+ +Y KCG  ++A  IFE     D VS   +L G+             
Sbjct: 315 REDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIF 374

Query: 334 ------------------AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                             A+NGF EE ++LF  M + G E      S  +    V  +  
Sbjct: 375 KEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYC 434

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G+Q H+ ++K  F S+    N LI MY+KCG +E++ +VF  M   +SVSWN++IAA  
Sbjct: 435 NGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALG 494

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           +HG+G +A+++YEEM  +G+ P  +T L++L ACSH GLV++G ++  SM  V+RI P A
Sbjct: 495 QHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGA 554

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           +HYA ++D++ R+G   +A S IE +P KP   +W+ALL  C +HG+ E+G  AA+KLF 
Sbjct: 555 DHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFG 614

Query: 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             P+    Y+L++N+++ +G+W+E A+  K M++ GV KE   SWIE+E QVH+F+VDD 
Sbjct: 615 LIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDT 674

Query: 616 MHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            HP+A+ ++  L +L + M   GYVP+  F+LH
Sbjct: 675 SHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLH 707



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 211/455 (46%), Gaps = 78/455 (17%)

Query: 89  TVIWNSLLSFYLKCDQ----MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG----- 139
           T + N+L+S Y KC      + +A K+FD++  +D  SW TM++G+++NG FD+G     
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243

Query: 140 --------------------FGFFKRSLEL------GFYQLDQASFTIILSACDRSELSL 173
                                GF++ +LE+         +LD+ ++  ++ AC  + L  
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303

Query: 174 VSKMIHCLV------------------YLCGYEEEVTV------------GNALITSYFK 203
           + K +H  V                  Y CG  +E                NAL++ Y  
Sbjct: 304 LGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVS 363

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
            G     + +F EM+ +N+++W  +ISGL +N   EEGLKLF  M      P    +  +
Sbjct: 364 SGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGA 423

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + +C+ L A C G+Q H  L K+   S L   +AL+ MY+KCG VE+A Q+F     LD 
Sbjct: 424 IKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS 483

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS   ++    Q+G   EA+ ++ +M+K GI   P+ ++ +L V    +  GL  Q    
Sbjct: 484 VSWNALIAALGQHGHGAEAVDVYEEMLKKGIR--PDRIT-LLTVLTACSHAGLVDQGRKY 540

Query: 384 I--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHG 438
              +++ +   P  ++   LI++  + G   D+  V   +  + +   W ++++    HG
Sbjct: 541 FDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHG 600

Query: 439 NGFKALELYEEMKLEGVEPT-DVTF--LSLLHACS 470
           N    L +    KL G+ P  D T+  LS +HA +
Sbjct: 601 N--MELGIIAADKLFGLIPEHDGTYMLLSNMHAAT 633



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 85/360 (23%)

Query: 252 LINPNSLTYLSSVMACSGLQ--ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
           L+   +  Y +++  C  L+  +L   R +HG +     Q    I + L+D+Y K   + 
Sbjct: 7   LVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELN 66

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNG--------FEE--------------------- 340
            A Q+F+   E D ++ T ++ G+  +G        FE+                     
Sbjct: 67  YARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHN 126

Query: 341 ----EAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
                A+ LF KM   G + D    ++VL G+  V        Q H+  +KS       V
Sbjct: 127 NDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSV 186

Query: 396 NNGLINMYSKCGD----LEDSIKVFSRMAPRNSVSWNSMIAAFARHG------------- 438
           +N L+++YSKC      L  + KVF  +  ++  SW +M+  + ++G             
Sbjct: 187 SNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMD 246

Query: 439 -----------------NGF--KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
                             GF  +ALE+   M   G+E  + T+ S++ AC+  GL+  G 
Sbjct: 247 DNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG- 305

Query: 480 EFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                  +VH    R E ++      +V +  + G   EAR+  E+MP K D++ W ALL
Sbjct: 306 ------KQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALL 358



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/326 (20%), Positives = 133/326 (40%), Gaps = 80/326 (24%)

Query: 354 IEIDPNMVSAVLGVFGVD---------TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           ++ +P++V A+   +  +         TSL L + +H  II   F     + N LI++Y 
Sbjct: 1   MQPNPDLVRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYC 60

Query: 405 KCGDLEDSIKVFSRM------------------------------AP---RNSVSWNSMI 431
           K  +L  + ++F  +                              AP   R++V +N+MI
Sbjct: 61  KSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMI 120

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS------------HVGLVNKGM 479
             F+ + +G+ A+ L+ +MK EG +P + TF S+L   +            H   +  G 
Sbjct: 121 TGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGA 180

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            ++ S++     +  + +  C         LL  AR   + + ++ D   W  ++     
Sbjct: 181 GYITSVSN----ALVSVYSKC----ASSPSLLHSARKVFDEI-LEKDERSWTTMMTGYVK 231

Query: 540 HGDSEMGKYAAEKLFLAQPDSP--APYILMANIYSCSGRWKERAKAIKRMKEMGVDKE-- 595
           +G  ++G    E+L     D+     Y  M + Y   G ++E  + ++RM   G++ +  
Sbjct: 232 NGYFDLG----EELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEF 287

Query: 596 ---------TGISWIEIEKQVHSFVV 612
                         +++ KQVH++V+
Sbjct: 288 TYPSVIRACATAGLLQLGKQVHAYVL 313


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 306/550 (55%), Gaps = 5/550 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SLL+ Y KC  + +A K+F+++P ++   WN ++S ++ NG        +K   ++ 
Sbjct: 278 VHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYK---QMK 334

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +   SFTI  +L++   + L  + ++IH  +     +  +T+ +AL+T Y K G S+
Sbjct: 335 LCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSN 394

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               +F  M+ R+V+ W +VISG  QN+ Y+E L  F  M   L+ P+S    S + AC+
Sbjct: 395 YANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACT 454

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL+ +  G  IHG + K  LQ D+ + S+L+DMYSK G  E A  IF      + V+   
Sbjct: 455 GLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNS 514

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+  + +N   + ++ LF ++++  +  D    ++VL       +L  GK +H  +++  
Sbjct: 515 IISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW 574

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              +  V N LI+MY KCG L+ +  +F R++ +N V+WNSMI  +  HG   KA+EL++
Sbjct: 575 IPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFD 634

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+  G++P DVTFLSLL +C+H GL+ +G+   + M     I PR EHY  +VD+ GRA
Sbjct: 635 EMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRA 694

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A SF++ MPV+PD  +W +LL +C IH + E+G+  A KL   +P   + Y+ + 
Sbjct: 695 GCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLL 754

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y  +  W   A     MKE G+ K  G SWIE+  +V  F   D   P    I+  L+
Sbjct: 755 NLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKVDVFYSGDCSSPITTEIYDTLS 814

Query: 629 ELLRLMIDEG 638
            L R MI +G
Sbjct: 815 SLKRNMIKKG 824



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 155/507 (30%), Positives = 252/507 (49%), Gaps = 35/507 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKT---FEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           V   R+ S   KEG       +H+  ++    F+PF             +  +L+  Y K
Sbjct: 145 VQFGRMQSSGYKEGK-----QIHSYIVRNMLNFDPF-------------LETALIDTYFK 186

Query: 102 CDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           C +   A  LF  +  R + V+WN M+ GF  NG ++    ++  + +    ++  +SFT
Sbjct: 187 CGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLA-KTENVKVVSSSFT 245

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
             LSAC + E     K +HC     G+E++  V  +L+T Y KC    S  KVF E+  +
Sbjct: 246 CTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDK 305

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQI 279
            +  W A+IS  V N    + L+++ +M L  +  +S T L+ V+  S +  L + GR I
Sbjct: 306 EIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILN-VLTSSSMAGLYDLGRLI 364

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + K  LQS + I+SAL+ MYSK G    A  IF   +E D V+   ++ GF QN   
Sbjct: 365 HTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKY 424

Query: 340 EEAMQLFVKM----VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +EA+  F  M    VK   +I  +++SA  G+  VD    LG  IH  +IKS    + FV
Sbjct: 425 KEALDFFRAMEADLVKPDSDIMASIISACTGLEKVD----LGCTIHGFVIKSGLQLDVFV 480

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            + L++MYSK G  E +  +FS M  +N V+WNS+I+ + R+     ++ L+ ++    +
Sbjct: 481 ASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDL 540

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
            P  V+F S+L A S V  + KG      +  +  I    +    ++DM  + GLL  A+
Sbjct: 541 YPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW-IPFDLQVENTLIDMYIKCGLLKYAQ 599

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGD 542
              ER+  K +++ W +++G    HG+
Sbjct: 600 HIFERISEK-NLVAWNSMIGGYGSHGE 625



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 231/495 (46%), Gaps = 47/495 (9%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   A   +   G ++H+S I T           + +   I +SL++ Y+KC    +AV
Sbjct: 59  LLKACASLSNLQYGKTIHSSIITT----------GLHSDQYITSSLINIYVKCGTFTDAV 108

Query: 110 KLFDDMP-----MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           K+FD +P     + D   WN+++ G+ R G+ + G   F R    G+ +           
Sbjct: 109 KVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE----------- 157

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVI 223
                      K IH  +       +  +  ALI +YFKCG  +  R +F +++ R N++
Sbjct: 158 ----------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIV 207

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            W  +I G  +N L+E  L+ ++      +   S ++  ++ AC   + +  G+Q+H   
Sbjct: 208 AWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDA 267

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K+  + D  + ++L+ MY KC  +E A ++F    + +      ++  +  NG+  +A+
Sbjct: 268 IKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDAL 327

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +++ +M    +  D   +  VL    +     LG+ IH+ I+K    S+  + + L+ MY
Sbjct: 328 RIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMY 387

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SK GD   +  +FS M  R+ V+W S+I+ F ++    +AL+ +  M+ + V+P      
Sbjct: 388 SKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMA 447

Query: 464 SLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           S++ AC+ +  V+ G       +KS  ++      +     ++DM  + G    A +   
Sbjct: 448 SIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASS-----LLDMYSKFGFPERAGNIFS 502

Query: 520 RMPVKPDVLVWQALL 534
            MP+K +++ W +++
Sbjct: 503 DMPLK-NLVAWNSII 516



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 199/426 (46%), Gaps = 33/426 (7%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           ++  +L AC         K IH  +   G   +  + ++LI  Y KCG+ +   KVF ++
Sbjct: 55  TYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQL 114

Query: 218 -----RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
                 V +V  W ++I G  +    EEG+  F +M                   SG + 
Sbjct: 115 PKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQ-----------------SSGYK- 156

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILV 331
             EG+QIH  + +  L  D  +E+AL+D Y KCG   +A  +F +  +  + V+  V++ 
Sbjct: 157 --EGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIG 214

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           GF +NG  E +++ ++      +++  +  +  L   G    +  GKQ+H   IK  F  
Sbjct: 215 GFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFED 274

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +P+V+  L+ MY KC  +E + KVF+ +  +    WN++I+A+  +G  + AL +Y++MK
Sbjct: 275 DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMK 334

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           L  V     T L++L + S  GL + G   + +      +       + ++ M  + G  
Sbjct: 335 LCTVLSDSFTILNVLTSSSMAGLYDLG-RLIHTEIVKRPLQSSITIQSALLTMYSKFGDS 393

Query: 512 IEARSFIERMPVKPDVLVWQALL-GACSIHGDSE-MGKYAAEKLFLAQPDSPAPYILMAN 569
             A S    M  + DV+ W +++ G C      E +  + A +  L +PDS    I+ + 
Sbjct: 394 NYANSIFSTMKER-DVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSD---IMASI 449

Query: 570 IYSCSG 575
           I +C+G
Sbjct: 450 ISACTG 455



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 31/314 (9%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I  LVQ + Y E LKL+ K     +     TY S + AC+ L  L  G+ IH  +    L
Sbjct: 28  IKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LDGVSM-TVILVGFAQNGFEEEAM 343
            SD  I S+L+++Y KCG+  DA ++F+   +    +D V++   I+ G+ + G  EE M
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGM 144

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
             F +M  +G +                     GKQIHS I+++    +PF+   LI+ Y
Sbjct: 145 VQFGRMQSSGYK--------------------EGKQIHSYIVRNMLNFDPFLETALIDTY 184

Query: 404 SKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
            KCG   ++  +F ++  R N V+WN MI  F  +G    +LE Y   K E V+    +F
Sbjct: 185 FKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSF 244

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
              L AC     V+ G +      +V        H + ++ M G+  ++  A      +P
Sbjct: 245 TCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTS-LLTMYGKCQMIESAEKVFNEVP 303

Query: 523 VKPDVLVWQALLGA 536
            K ++ +W AL+ A
Sbjct: 304 DK-EIELWNALISA 316



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S+H   ++ + PFD Q          + N+L+  Y+KC  ++ A  +F+ +  ++ V+
Sbjct: 563 GKSVHGYLVRLWIPFDLQ----------VENTLIDMYIKCGLLKYAQHIFERISEKNLVA 612

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           WN+M+ G+  +GE       F      G  + D  +F  +LS+C+ S L
Sbjct: 613 WNSMIGGYGSHGECSKAIELFDEMRSSGI-KPDDVTFLSLLSSCNHSGL 660


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/590 (33%), Positives = 324/590 (54%), Gaps = 17/590 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  ++T   +D ++V+         N+L+  Y K   +  A  +F  +P  D VS
Sbjct: 221 GRKVHAMVVRT--GYD-KDVFTA-------NALVDMYSKLGDIHMAALVFGKVPKTDVVS 270

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVS--KMI 178
           WN  +SG + +G            L++    L    FT+  IL AC  +     +  + I
Sbjct: 271 WNAFISGCVLHGHDQHALELL---LQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQI 327

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  +     + +  +G AL+  Y K G     RKVF  +  ++++ W A+ISG      +
Sbjct: 328 HGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCH 387

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E L LF +M     + N  T  + + + + L+A+ +  Q+H +  K+   SD  + + L
Sbjct: 388 GESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGL 447

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +D Y KC  +  A ++FE     + ++ T ++   +Q    E+A++LF++M++ G+E DP
Sbjct: 448 IDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDP 507

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            ++S++L      ++   GKQ+H+ +IK  F ++ F  N L+  Y+KCG +ED+   FS 
Sbjct: 508 FVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSG 567

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  +  VSW++MI   A+HG+G +AL+++  M  E + P  +T  S+L AC+H GLV++ 
Sbjct: 568 LPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEA 627

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +  SM E+  I    EHY+C++D++GRAG L +A   +  MP + +  VW ALL A  
Sbjct: 628 KGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASR 687

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +H D E+GK AAEKLF+ +P+    ++L+AN Y+ +G W E AK  K MK+  V KE  +
Sbjct: 688 VHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAM 747

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SW+E++ +VH+F+V DK HP+A  I+  L EL  LM   GYVPN    LH
Sbjct: 748 SWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLH 797



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 155/519 (29%), Positives = 260/519 (50%), Gaps = 28/519 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + N+L++ Y     +  A ++FD+    R+ VSWN M+S F++N         F   +  
Sbjct: 137 VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWS 196

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + ++  F+ +++AC  S      + +H +V   GY+++V   NAL+  Y K G    
Sbjct: 197 GV-RPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHM 255

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM---A 266
              VFG++   +V++W A ISG V +   +  L+L ++M    + PN  T LSS++   A
Sbjct: 256 AALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFT-LSSILKACA 314

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            +G  A   GRQIHG + K    SD  I  AL+DMY+K G ++DA ++FE+    D +  
Sbjct: 315 GAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLW 374

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G +  G   E++ LF +M K G +I+   ++AVL       ++    Q+H+L  K
Sbjct: 375 NALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEK 434

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F S+  V NGLI+ Y KC  L  + KVF   +  N +++ SMI A ++  +G  A++L
Sbjct: 435 IGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKL 494

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF------LKSMTEVHRISPRAEHYAC 500
           + EM  +G+EP      SLL+AC+ +    +G +        K MT+V   +     YA 
Sbjct: 495 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYA- 553

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQP 558
                 + G + +A      +P K  V+ W A++G  + HG    GK A +  +  + + 
Sbjct: 554 ------KCGSIEDADLAFSGLPDK-GVVSWSAMIGGLAQHGH---GKRALDVFRRMVDER 603

Query: 559 DSPAPYILMANIYSC--SGRWKERAKAIKRMKEM-GVDK 594
            +P    L + + +C  +G   E       MKEM G+D+
Sbjct: 604 IAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDR 642



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 221/453 (48%), Gaps = 30/453 (6%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKT--FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           IS LL+  A      LG  +HA  +K+     F N               LLSFY KC  
Sbjct: 7   ISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNH--------------LLSFYSKCRL 52

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             +A ++FD+ P    VSW+++V+ +  N         F R++     + ++ +  I+L 
Sbjct: 53  PGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAF-RAMRARGVRCNEFALPIVLK 111

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE-MRVRNVI 223
               + L +    +H +    G   ++ V NAL+  Y   G     R+VF E  R RN +
Sbjct: 112 CAPDAGLGV---QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAV 168

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +W  ++S  V+N    + ++LF +M    + PN   +   V AC+G + L  GR++H ++
Sbjct: 169 SWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMV 228

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            +     D+   +AL+DMYSK G +  A  +F    + D VS    + G   +G ++ A+
Sbjct: 229 VRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHAL 288

Query: 344 QLFVKMVKAGIEIDPNMVSAVL--GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           +L ++M  +G+  +   +S++L         +  LG+QIH  +IK+   S+ ++   L++
Sbjct: 289 ELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVD 348

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G L+D+ KVF  +  ++ + WN++I+  +  G   ++L L+  M+ EG +    T
Sbjct: 349 MYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTT 408

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             ++L + +        +E +   T+VH ++ +
Sbjct: 409 LAAVLKSTA-------SLEAISDTTQVHALAEK 434



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 179/359 (49%), Gaps = 19/359 (5%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N L++ Y KC    S R+VF E      ++W+++++    N L  E L  F  M    + 
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            N    L  V+ C+    L  G Q+H +     L  D+ + +AL+ MY   G V++A ++
Sbjct: 101 CNEFA-LPIVLKCAPDAGL--GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 315 F-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           F E A + + VS   ++  F +N    +A++LF +MV +G+  +    S V+        
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G+++H++++++ +  + F  N L++MYSK GD+  +  VF ++   + VSWN+ I+ 
Sbjct: 218 LEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISG 277

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---- 489
              HG+   ALEL  +MK  G+ P   T  S+L A         G        ++H    
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA-----CAGAGAGAFALGRQIHGFMI 332

Query: 490 RISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS---IHGDS 543
           +    ++ Y    +VDM  + GLL +AR   E +P K D+L+W AL+  CS    HG+S
Sbjct: 333 KACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNALISGCSHGGCHGES 390



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 6/179 (3%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           P  +S +L  +    SL LG  IH+ ++KS    + F N+ L++ YSKC     + +VF 
Sbjct: 4   PESISPLLTRYAATQSLFLGAHIHAHLLKSGLL-HAFRNH-LLSFYSKCRLPGSARRVFD 61

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
                  VSW+S++ A++ +    +AL  +  M+  GV   +     +L      GL   
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL--- 118

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           G++ + ++     +S        +V M G  G + EAR   +      + + W  ++ A
Sbjct: 119 GVQ-VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/489 (36%), Positives = 284/489 (58%), Gaps = 1/489 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC +S+    ++ IH  +    +E +  + N+LI  Y KCGS     KVF +MR
Sbjct: 54  YHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMR 113

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +++++WT++I+G  QN +  E + L   M  G   PN  T+ S + A         G Q
Sbjct: 114 KKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQ 173

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH +  K     D+ + SAL+DMY++CG ++ A  +F+  +  +GVS   ++ GFA+ G 
Sbjct: 174 IHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGD 233

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
            E A+ +F +M + G E      S++        +L  GK +H+ ++KS      FV N 
Sbjct: 234 GETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT 293

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           +++MY+K G + D+ KVF R+  ++ V+WNSM+ AFA++G G +A+  +EEM+  G+   
Sbjct: 294 MLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLN 353

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            +TFL +L ACSH GLV +G  +   M + + + P  EHY  VVD++GRAGLL  A  FI
Sbjct: 354 QITFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFI 412

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
            +MP++P   VW ALL AC +H ++++G++AA+ +F   PD   P +L+ NIY+ +G W 
Sbjct: 413 FKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWD 472

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             A+  K MK  GV KE   SW+EI   VH FV +D  HP+A+ I+ +  E+   +  EG
Sbjct: 473 AAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEG 532

Query: 639 YVPNKRFIL 647
           YVP+  ++L
Sbjct: 533 YVPDMDYVL 541



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 169/303 (55%), Gaps = 13/303 (4%)

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G + P    Y + + AC+  + L + R+IHG L     + D  ++++L+ +Y KCGSV +
Sbjct: 45  GELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVE 104

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+   + D VS T ++ G+AQN    EA+ L   M+K   + +    +++L   G 
Sbjct: 105 AHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGA 164

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
               G+G QIH+L +K D+  + +V + L++MY++CG ++ +  VF ++  +N VSWN++
Sbjct: 165 YADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL 224

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ FAR G+G  AL ++ EM+  G E T  T+ S+    + +G + +G          H 
Sbjct: 225 ISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQG-----KWVHAHM 279

Query: 491 ISPRAEHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           +  R +  A V    +DM  ++G +I+AR   ER+ +  D++ W ++L A + +G   +G
Sbjct: 280 VKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERV-LNKDLVTWNSMLTAFAQYG---LG 335

Query: 547 KYA 549
           K A
Sbjct: 336 KEA 338



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 169/351 (48%), Gaps = 6/351 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  +  A K+FD M  +D VSW ++++G+ +N       G     L+ G +
Sbjct: 90  NSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRF 148

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L A      S +   IH L   C + E+V VG+AL+  Y +CG       
Sbjct: 149 KPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATA 208

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF ++  +N ++W A+ISG  +    E  L +F +M          TY S     +G+ A
Sbjct: 209 VFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGA 268

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+ +H  + K   +    + + ++DMY+K GS+ DA ++FE     D V+   +L  
Sbjct: 269 LEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTA 328

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           FAQ G  +EA+  F +M K+GI ++      +L        +  GK    +I   ++   
Sbjct: 329 FAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMI--KEYNLE 386

Query: 393 PFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
           P + +   ++++  + G L  ++    +M    + + W +++AA   H N 
Sbjct: 387 PEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNA 437



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 1/216 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++LL  Y +C +M  A  +FD +  ++ VSWN ++SGF R G+ +     F      G
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNG 248

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F +    +++ I S           K +H  +     +    VGN ++  Y K GS    
Sbjct: 249 F-EATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDA 307

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RKVF  +  ++++TW ++++   Q  L +E +  F +M    I  N +T+L  + ACS  
Sbjct: 308 RKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHG 367

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
             + EG+    ++ +  L+ ++     ++D+  + G
Sbjct: 368 GLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAG 403


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 321/569 (56%), Gaps = 25/569 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL++ Y++C   R+A +LFD MP R+ V+W  +V+G+  N +  +G   F   LE+G
Sbjct: 115 VATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG 174

Query: 151 FYQLDQ---ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            Y       A+    L++CD      + K +H      G E   ++GN+L + Y K GS 
Sbjct: 175 RYPSHYTLGATLNACLASCDVD----LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 230

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S  + F  +  +NVITWT +IS   +++   E GL LF+ M +  + PN  T L+SVM+
Sbjct: 231 DSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFT-LTSVMS 289

Query: 267 CSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             G +  L  G+Q+    +K+  +++L ++++ M +Y + G  ++A ++FE  E+   ++
Sbjct: 290 LCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIIT 349

Query: 326 MTVILVGFAQ-------------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
              ++ G+AQ              GF+  A+ +F  + ++ ++ D    S++L V     
Sbjct: 350 WNAMISGYAQIMDSAKDDLQARSRGFQ--ALTIFRDLKRSVMKPDLFTFSSILSVCSAMM 407

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  G+QIH+  IKS F S+  VN+ L+NMY+KCG ++D+ K F  M  R  V+W SMI+
Sbjct: 408 ALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMIS 467

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            +++HG   +A++L+EEM+L GV P ++TF+SLL ACS+ GLV +   +   M + + I 
Sbjct: 468 GYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIE 527

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P  +HY C++DM  R G + +A SFI+R   +P+  +W +L+  C  HG+ E+  YAA+K
Sbjct: 528 PVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADK 587

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           L   +P     YIL+ N+Y  + RW++ A+  K MK+  V      SWI I+ +V+ F  
Sbjct: 588 LLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRA 647

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +D+ HPQA  ++ +L  LL      GY P
Sbjct: 648 NDRTHPQATELYQLLENLLEKAKAIGYEP 676



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 226/460 (49%), Gaps = 38/460 (8%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQN-----VYNVPNA 88
           +S   L L+ +V+   +L +     H+ LG +L+A           Q       Y   + 
Sbjct: 157 NSQPALGLEVFVE---MLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESI 213

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE-FDMGFGFFKRSL 147
           T + NSL S Y K   + +A++ F  +P ++ ++W TM+S    + E  ++G   F   L
Sbjct: 214 TSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDML 273

Query: 148 ELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             G    ++ + T ++S C  R +L+L  K +    +  G E  + V N+ +  Y + G 
Sbjct: 274 MDGVMP-NEFTLTSVMSLCGTRLDLNL-GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGE 331

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ------NQLYE-----EGLKLFVKMHLGLINP 255
           +    ++F +M   ++ITW A+ISG  Q      + L       + L +F  +   ++ P
Sbjct: 332 TDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKP 391

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           +  T+ S +  CS + AL +G QIH    K    SD+ + SAL++MY+KCG ++DA + F
Sbjct: 392 DLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAF 451

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                   V+ T ++ G++Q+G  +EA+QLF +M  AG+   PN ++ V  +    +  G
Sbjct: 452 LEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVR--PNEITFV-SLLSACSYAG 508

Query: 376 LGKQIHSL--IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSM 430
           L ++      ++K ++   P V++   +I+M+ + G +ED+     R     N   W+S+
Sbjct: 509 LVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSL 568

Query: 431 IAAFARHGN---GFKALELYEEMKLEGVEPTDVTFLSLLH 467
           +A    HGN    F A +   E+K +G+E    T++ LL+
Sbjct: 569 VAGCRSHGNMELAFYAADKLLELKPKGIE----TYILLLN 604



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 200/395 (50%), Gaps = 14/395 (3%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            ++ +H  +   G   ++ V  +L+ +Y +CG++   R++F  M  RNV+TWTA+++G  
Sbjct: 96  AARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYT 155

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
            N     GL++FV+M      P+  T  +++ AC     +  G+Q+HG   K   +S   
Sbjct: 156 LNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITS 215

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN-GFEEEAMQLFVKMVKA 352
           + ++L  +Y+K GS++ A + F    E + ++ T ++   A++    E  + LF+ M+  
Sbjct: 216 MGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMD 275

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+  +   +++V+ + G    L LGKQ+ +   K    +N  V N  + +Y + G+ +++
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEA 335

Query: 413 IKVFSRMAPRNSVSWNSMIAAFAR-----------HGNGFKALELYEEMKLEGVEPTDVT 461
           +++F +M   + ++WN+MI+ +A+              GF+AL ++ ++K   ++P   T
Sbjct: 336 MRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFT 395

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S+L  CS +  + +G +      +   +S    + A +V+M  + G + +A      M
Sbjct: 396 FSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSA-LVNMYNKCGCIQDANKAFLEM 454

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           P +  V  W +++   S HG  +      E++ LA
Sbjct: 455 PTRTFV-TWTSMISGYSQHGQPQEAIQLFEEMRLA 488



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 47/338 (13%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
            S  Y+  +  C  + +L   R +HG + K    +D+ + ++L++ Y +CG+  DA ++F
Sbjct: 77  QSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLF 136

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E + V+ T ++ G+  N      +++FV+M++ G       + A L        + 
Sbjct: 137 DGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVD 196

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           LGKQ+H   IK    S   + N L ++Y+K G L+ +++ F R+  +N ++W +MI+A A
Sbjct: 197 LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACA 256

Query: 436 RHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHACS------------------------ 470
                 +  L L+ +M ++GV P + T  S++  C                         
Sbjct: 257 EDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNL 316

Query: 471 -----------HVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSF 517
                        G  ++ M   + M +   I+  A    YA ++D   +  L   +R F
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMD-SAKDDLQARSRGF 375

Query: 518 --------IERMPVKPDVLVWQALLGACSIHGDSEMGK 547
                   ++R  +KPD+  + ++L  CS     E G+
Sbjct: 376 QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGE 413


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 299/517 (57%), Gaps = 3/517 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL++ Y+ C +M  A ++FD M  R  VSWNTM++G+ +NG        F   +  G
Sbjct: 160 VQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG 219

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D A+   +L  C   +   V + +H LV +    E+++V N+L+  Y KCG+    
Sbjct: 220 I-EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEA 278

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + +F EM  R+V++WT +++G + N      L L   M    + PN +T  S + AC+ L
Sbjct: 279 QMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASL 338

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  GR +HG   +  L+S++ +E+AL+DMY+KC +V  ++++F    +        I+
Sbjct: 339 YSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAII 398

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G   NG   +A++LF +M+   ++ +   ++++L  +   T L   + +H  +I+S F 
Sbjct: 399 SGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFL 458

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS--VSWNSMIAAFARHGNGFKALELYE 448
           S   V   LI++YSKCG LE +  +F+ +  ++   ++W+++IA +  HG+G  A+ L++
Sbjct: 459 SRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFD 518

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   GV+P ++TF S+LHACSH GLV++G+   K M E +++S R +HY CV+D++GRA
Sbjct: 519 QMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRA 578

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   I  M  +P+  VW ALLG+C IH + E+G+ AA+ LF  +P +   Y+L+A
Sbjct: 579 GRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLA 638

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           NIYS  GRW++       M  +G+ K    S IE+  
Sbjct: 639 NIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 234/462 (50%), Gaps = 6/462 (1%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           P +  + +SL + Y       +A KLFD++      SWN M+  +  +G      G F +
Sbjct: 53  PYSHHLLSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            L  G    D  ++  ++ AC    L  +  +IH    + G++ +  V N+L+  Y  CG
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                R+VF  MR R +++W  +I+G  +N   +E L +F  M    I P+  T +S + 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            CS L+ L  GR++H ++    L  D+ + ++L+DMY+KCG++++A  IF   ++ D VS
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVS 292

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
            T ++ G+  NG    A+ L  +M++    + PN V+  +VL       SL  G+ +H  
Sbjct: 293 WTTMMNGYILNGDARSAL-LLCQMMQFE-SVKPNFVTLASVLSACASLYSLKHGRCLHGW 350

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I+    S   V   LI+MY+KC ++  S +VFS+ + + +  WN++I+    +G   KA
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKA 410

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           +EL+++M +E V+P D T  SLL A + +  + +       +     +S R E    ++D
Sbjct: 411 IELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILID 469

Query: 504 MVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSE 544
           +  + G L  A +    +P K  D++ W A++    +HG  E
Sbjct: 470 IYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 185/368 (50%), Gaps = 17/368 (4%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V N+     +WNSLL  Y KC  M  A  +F +M  RD VSW TM++G++ NG+      
Sbjct: 252 VKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL- 310

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
              + ++    + +  +   +LSAC         + +H        E EV V  ALI  Y
Sbjct: 311 LLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMY 370

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KC + +   +VF +   +    W A+ISG + N L  + ++LF +M +  ++PN  T  
Sbjct: 371 AKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLN 430

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AE 319
           S + A + L  L + R +HG L +    S + + + L+D+YSKCGS+E A  IF     +
Sbjct: 431 SLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKK 490

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLG 375
           + D ++ + I+ G+  +G  E A+ LF +MV++G++ +    +++L        VD  LG
Sbjct: 491 DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLG 550

Query: 376 LGK---QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMI 431
           L K   + + + +++D  +       +I++  + G LE++ ++   MA R N   W +++
Sbjct: 551 LFKFMLEDNQMSLRTDHYT------CVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604

Query: 432 AAFARHGN 439
            +   H N
Sbjct: 605 GSCVIHEN 612


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 351/667 (52%), Gaps = 50/667 (7%)

Query: 16  FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE 75
           F  SLV P  T   Q PTS     +L N+  ++ L +  +    F     +H+  IKT  
Sbjct: 6   FSPSLVMPPPTLHFQ-PTSDPPYKLLQNHPSLTLLSTCKS----FQNLKQIHSQIIKT-- 58

Query: 76  PFDNQNVYNVPNATVIWNSLLSFYL--KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
                    + N     + L+ F        +  A+ LF+ +   +   WNTM+ G   +
Sbjct: 59  --------GLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLS 110

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
                   F+ R L  G  + +  +F  +L +C +   +   K IH  V   G E +  V
Sbjct: 111 SSPVGAIDFYVRMLLCGV-EPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFV 169

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV-------------------- 233
             +LI  Y + G       VF +  +R+ +++TA+I+G                      
Sbjct: 170 HTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDA 229

Query: 234 -----------QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
                      Q+  +EE L  F +M    + PN  T ++ + AC+   +L  G  +   
Sbjct: 230 VSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSW 289

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           +    L S+L + +AL+DMYSKCG ++ A  +FE   E D +S  V++ G++     +EA
Sbjct: 290 IEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEA 349

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNGLIN 401
           + LF KM ++ +E +     ++L       +L LGK IH+ I K     +N  +   LI+
Sbjct: 350 LALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLID 409

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG++E + +VF+ M P++  SWN+MI+  A HG+   ALEL+ +M+ EG EP D+T
Sbjct: 410 MYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDIT 469

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+ +L ACSH GLV  G +   SM E + ISP+ +HY C++D++GRAGL  EA + ++ M
Sbjct: 470 FVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNM 529

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
            +KPD  +W +LLGAC +HG+ E+G++AA+ LF  +P++P  Y+L++NIY+ +GRW + A
Sbjct: 530 EMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVA 589

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +   ++ + G+ K  G S IE++  VH F+V DK+H Q+  I+ +L E+ +L+   G+VP
Sbjct: 590 RIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVP 649

Query: 642 NKRFILH 648
           +   +L+
Sbjct: 650 DTSEVLY 656


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 199/565 (35%), Positives = 312/565 (55%), Gaps = 11/565 (1%)

Query: 92  WN-----SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           WN     SL+  Y +      A  LFDDMP RD  SWN M+SG ++NG            
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE- 306

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           + L   +++  +   IL  C +      + +IH  V   G E ++ V NALI  Y K G+
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RK F +M + +V++W ++I+   QN         FVKM L    P+ LT +S    
Sbjct: 367 LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 267 CSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            +  +     R +HG + +   L  D+ I +A++DMY+K G ++ A ++FE     D +S
Sbjct: 427 VAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVIS 486

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
              ++ G+AQNG   EA++++ KM++   EI PN  +  ++L  +    +L  G +IH  
Sbjct: 487 WNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGR 545

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IK++   + FV   LI++Y KCG L D++ +F ++   +SV+WN++I+    HG+  K 
Sbjct: 546 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKT 605

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L+L+ EM  EGV+P  VTF+SLL ACSH G V +G    + M E + I P  +HY C+VD
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVD 664

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L  A  FI+ MP++PD  +W ALLGAC IHG+ E+GK+A+++LF     +   
Sbjct: 665 LLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGY 724

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L++NIY+  G+W+   K     +E G+ K  G S IE+ ++V  F   ++ HP+   I
Sbjct: 725 YVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEI 784

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L  L   M   GY+P+  F+L 
Sbjct: 785 YEELRVLTAKMKSLGYIPDYSFVLQ 809



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 140/487 (28%), Positives = 249/487 (51%), Gaps = 14/487 (2%)

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +P +D  +WN+M+S ++ NG F    G F + L +   + D  +F  +L AC     
Sbjct: 174 FDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---- 229

Query: 172 SLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           +LV  + IHC  +  G++  V V  +LI  Y + G +   R +F +M  R++ +W A+IS
Sbjct: 230 TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS 289

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL+QN    + L +  +M L  I  N +T +S +  C  L  +     IH  + K  L+ 
Sbjct: 290 GLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF 349

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           DL + +AL++MY+K G++EDA + F+     D VS   I+  + QN     A   FVKM 
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDL 409
             G + D   + ++  +          + +H  I++  +   +  + N +++MY+K G L
Sbjct: 410 LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL 469

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHA 468
           + + KVF  +  ++ +SWN++I  +A++G   +A+E+Y+ M + + + P   T++S+L A
Sbjct: 470 DSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529

Query: 469 CSHVGLVNKGMEFLKSM--TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            +HVG + +GM     +  T +H     A    C++D+ G+ G L++A S   ++P +  
Sbjct: 530 YAHVGALQQGMRIHGRVIKTNLHLDVFVA---TCLIDVYGKCGRLVDAMSLFYQVPQESS 586

Query: 527 VLVWQALLGACSIHGDSEMG-KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           V  W A++    IHG +E   K   E L          ++ + +  S SG  +E     +
Sbjct: 587 V-TWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 645

Query: 586 RMKEMGV 592
            M+E G+
Sbjct: 646 LMQEYGI 652



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 187/383 (48%), Gaps = 19/383 (4%)

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           D S  +  +K +H L+ + G  + + +   L+  Y   G  S  R  F ++  ++V TW 
Sbjct: 127 DSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWN 186

Query: 227 AVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           ++IS  V N  + E +  F ++ L   I P+  T+   + AC     L +GR+IH   +K
Sbjct: 187 SMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---TLVDGRRIHCWAFK 243

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L  Q ++ + ++L+ MYS+ G    A  +F+     D  S   ++ G  QNG   +A+ +
Sbjct: 244 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 303

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
             +M   GI+++   V ++L V      +     IH  +IK     + FV+N LINMY+K
Sbjct: 304 LDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAK 363

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G+LED+ K F +M   + VSWNS+IAA+ ++ +   A   + +M+L G +P  +T +SL
Sbjct: 364 FGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSL 423

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSFI 518
                   +V +  +  K+   VH    R             VVDM  + GLL  A    
Sbjct: 424 ------ASIVAQSRD-CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVF 476

Query: 519 ERMPVKPDVLVWQALLGACSIHG 541
           E + VK DV+ W  L+   + +G
Sbjct: 477 EIILVK-DVISWNTLITGYAQNG 498



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 107/223 (47%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           VI N+++  Y K   + +A K+F+ + ++D +SWNT+++G+ +NG        +K   E 
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                +Q ++  IL A            IH  V       +V V   LI  Y KCG    
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVD 573

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F ++   + +TW A+IS    +   E+ LKLF +M    + P+ +T++S + ACS 
Sbjct: 574 AMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSH 633

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
              + EG+    ++ +  ++  L     ++D+  + G +E A+
Sbjct: 634 SGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAY 676



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 30/199 (15%)

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           EID N +      F   T     K +H+L++ +    + F++  L+N+Y+  GD+  S  
Sbjct: 119 EIDFNFL------FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRC 172

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALE-LYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            F ++  ++  +WNSMI+A+  +G+  +A+   Y+ + +  + P   TF  +L AC    
Sbjct: 173 TFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG--- 229

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHY---------ACVVDMVGRAGLLIEARSFIERMPVK 524
                     ++ +  RI   A            A ++ M  R G    ARS  + MP +
Sbjct: 230 ----------TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 279

Query: 525 PDVLVWQALLGACSIHGDS 543
            D+  W A++     +G++
Sbjct: 280 -DMGSWNAMISGLIQNGNA 297


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 305/537 (56%), Gaps = 7/537 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y+KC  + +A  +FD MP RD +SWN M+SG+  N     G   F    E  F 
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREF-FV 292

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T ++SAC+      + + +H  V   G+  EV+V N+LI  +   G       
Sbjct: 293 DPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEM 352

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  +++++WTA+ISG  +N L E+ ++ +  M    + P+ +T  S + AC+GL  
Sbjct: 353 VFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGL 412

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G  +H    +  L S + + ++L+DMYSKC  ++ A ++F      + +S T I++G
Sbjct: 413 LDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILG 472

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              N    EA+  F +M+   + + PN V+  +VL       +L  GK+IH+  +++   
Sbjct: 473 LRLNYRSFEALFFFQQMI---LSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLG 529

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N L++MY +CG +E +   F+    ++  SWN ++  +A+ G G  A+EL+ +M
Sbjct: 530 FDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKM 588

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               V P ++TF SLL ACS  G+V  G+E+ +SM     I+P  +HYA VVD++GRAG 
Sbjct: 589 IESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGR 648

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI++MP+ PD  +W ALL AC I+ + E+G+ AA+ +F     S   YIL+ N+
Sbjct: 649 LEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNL 708

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           Y+ SG+W E A+  K M+E  +  + G SW+E+  QVH+F+  D  HPQ   I+ VL
Sbjct: 709 YADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVL 765



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 199/381 (52%), Gaps = 2/381 (0%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +++ ++  +L  C+    +     +H  V        V +GNAL++ + + G       V
Sbjct: 92  VEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYV 151

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           FG+M  R++ +W  ++ G  +   ++E L L+ +M    I P+  T+   +  C GL  L
Sbjct: 152 FGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDL 211

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GR++H  + +   +SD+ + +AL+ MY KCG +  A  +F+     D +S   ++ G+
Sbjct: 212 ARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGY 271

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            +N    E ++LF  M +  ++ D   +++V+          LG+++H  +IK+ F +  
Sbjct: 272 FENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEV 331

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            VNN LI M+S  G  +++  VFS+M  ++ VSW +MI+ + ++G   KA+E Y  M+ E
Sbjct: 332 SVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHE 391

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           GV P ++T  S+L AC+ +GL++KG+  L    +   ++        ++DM  +   + +
Sbjct: 392 GVVPDEITIASVLSACAGLGLLDKGI-MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 514 ARSFIERMPVKPDVLVWQALL 534
           A     R+P K +V+ W +++
Sbjct: 451 ALEVFHRIPNK-NVISWTSII 470



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 143/354 (40%), Gaps = 68/354 (19%)

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E+A+     M +  + ++     A+L +     +   G ++HS + K+       + N L
Sbjct: 76  EKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++M+ + GDL ++  VF +MA R+  SWN ++  +A+ G   +AL LY  M   G+ P  
Sbjct: 136 LSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDV 195

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD----MVGRAGLLIEAR 515
            TF  +L  C  +  + +G E       +H I    E    VV+    M  + G +  AR
Sbjct: 196 YTFPCVLRTCGGLPDLARGRE-----VHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250

Query: 516 SFIERMP----------------------------------VKPDVLVWQALLGACSIHG 541
              +RMP                                  V PD++   +++ AC   G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310

Query: 542 DSEMGK----YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           D  +G+    Y  +  F+A+       I M   +S  G W E      +M+   +     
Sbjct: 311 DERLGREVHGYVIKTGFVAEVSVNNSLIQM---HSSVGCWDEAEMVFSKMEFKDL----- 362

Query: 598 ISWIEI----------EKQVHSFVV--DDKMHPQADTIHGVLAELLRL-MIDEG 638
           +SW  +          EK V ++ +   + + P   TI  VL+    L ++D+G
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +LS  A+ G    G  +HA  ++T   FD      +PNA      LL  Y++C
Sbjct: 496 NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDG----FLPNA------LLDMYVRC 545

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M  A   F+    +D  SWN +++G+ + G+  +    F + +E      D+ +FT +
Sbjct: 546 GRMEPAWNQFNSCE-KDVASWNILLTGYAQQGKGGLAVELFHKMIESDV-NPDEITFTSL 603

Query: 163 LSACDRS 169
           L AC RS
Sbjct: 604 LCACSRS 610


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 194/559 (34%), Positives = 301/559 (53%), Gaps = 4/559 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +L+  Y++C +   A  +F  MPMRD V+WN M++G+  +G +           + G  
Sbjct: 138 TALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGL 197

Query: 153 QLDQASFTIILSACDRSELSLVSKMIH--CL-VYLCGYEEEVTVGNALITSYFKCGSSSS 209
           + + ++   +L    +         +H  CL  YL   EE+V +G AL+  Y KC     
Sbjct: 198 RPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVY 257

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACS 268
             +VF  M VRN +TW+A+I G V      E   LF  M + G+   ++ +  S++  C+
Sbjct: 258 ACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCA 317

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L  L  G Q+H +L K  + +DL   ++L+ MY+K G + +A  +F+     D +S   
Sbjct: 318 SLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGA 377

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +L G+ QNG  EEA  +F KM    ++ D   + +++       +L  G+  H  +I   
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 + N LI+MY+KCG ++ S +VF +M  R+ VSWN+MIA +  HG G +A  L+ 
Sbjct: 438 LALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFL 497

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK +G EP DVTF+ L+ ACSH GLV +G  +  +MT  + I PR EHY C+VD++ R 
Sbjct: 498 SMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARG 557

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  FI+ MP+K DV VW ALLGAC IH + ++GK  +  +    P+    ++L++
Sbjct: 558 GFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLS 617

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NI+S +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HP +  I+  L 
Sbjct: 618 NIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELD 677

Query: 629 ELLRLMIDEGYVPNKRFIL 647
            +L  +   GY  +  F+L
Sbjct: 678 NILIDIKKLGYQADTSFVL 696



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 238/493 (48%), Gaps = 19/493 (3%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           W   L  ++   Q+  A ++FD +P  D  ++N ++  +   G F      ++  L   +
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSML---Y 92

Query: 152 YQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           +++  ++ +F  +L AC         + IH      G   ++ V  ALI  Y +C     
Sbjct: 93  FRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGP 152

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLINPNSLTYLSSVMACS 268
              VF +M +R+V+ W A+++G   + +Y   +   + M   G + PN+ T +S +   +
Sbjct: 153 AANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLA 212

Query: 269 GLQALCEGRQIHGILWKLAL---QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
              AL +G  +H    +  L   +  + I +AL+DMY+KC  +  A ++F      + V+
Sbjct: 213 QHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT 272

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            + ++ GF       EA  LF  M+  G+  +    V++ L V      L +G Q+H+L+
Sbjct: 273 WSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALL 332

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            KS   ++    N L++MY+K G + ++  +F  +A ++++S+ ++++ + ++G   +A 
Sbjct: 333 AKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAF 392

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            ++++M+   V+P   T +SL+ ACSH+  +  G     S+  +  ++        ++DM
Sbjct: 393 LVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVI-IRGLALETSICNSLIDM 451

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---P 561
             + G +  +R   ++MP + D++ W  ++    IHG   +GK  A  LFL+  +    P
Sbjct: 452 YAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIHG---LGK-EATTLFLSMKNQGFEP 506

Query: 562 APYILMANIYSCS 574
                +  I +CS
Sbjct: 507 DDVTFICLIAACS 519



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 160/317 (50%), Gaps = 11/317 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +  LL + A+ G    G S+HA  ++ +   + + V       +I  +LL  Y KC
Sbjct: 200 NASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQV-------LIGTALLDMYAKC 252

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A ++F  M +R+ V+W+ ++ GF+        F  FK  L  G   L   S    
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L  C       +   +H L+   G   ++T GN+L++ Y K G  +    +F E+ +++ 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG- 281
           I++ A++SG VQN   EE   +F KM    + P+  T +S + ACS L AL  GR  HG 
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 282 -ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            I+  LAL++ +C  ++L+DMY+KCG ++ + Q+F+     D VS   ++ G+  +G  +
Sbjct: 433 VIIRGLALETSIC--NSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGK 490

Query: 341 EAMQLFVKMVKAGIEID 357
           EA  LF+ M   G E D
Sbjct: 491 EATTLFLSMKNQGFEPD 507


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 209/640 (32%), Positives = 328/640 (51%), Gaps = 74/640 (11%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMG 139
           ++      V   SL+S Y    ++R++   FD +P+  RDTV  N M+S F R       
Sbjct: 82  LFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPA 141

Query: 140 FGFFKRSLELG-FYQLDQASFTIILSACDRSELSLVSK--MIHCLVYLCGYEEEVTVGNA 196
              F+  L      + D  SFT +LSA  +     VS    +HC V+  G    ++V NA
Sbjct: 142 VSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNA 201

Query: 197 LITSYFKC---GSSSSGRKVFGEMRVRNVITWT--------------------------- 226
           LI  Y KC   G +   RKV  EM  ++ +TWT                           
Sbjct: 202 LIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFD 261

Query: 227 ----AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
               A+ISG VQ+ +  E  +LF +M    I P+  T+ S + AC+       G+ +HG 
Sbjct: 262 VVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQ 321

Query: 283 LWKL----ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG- 337
             +L      ++ L + +AL+ +YSK G +  A +IF+     D VS   IL G+ ++G 
Sbjct: 322 FIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGC 381

Query: 338 ------------------------------FEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
                                           E+A++LF +M    ++      +  +  
Sbjct: 382 LDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAA 441

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
            G   +L  GKQ+H+ +++  F ++    N L+ MY++CG ++D+  VF  M   +SVSW
Sbjct: 442 CGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSW 501

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           N+MI+A  +HG+G +ALEL+++M  +G+ P  ++FL++L AC+H GLV+ G ++ +SM  
Sbjct: 502 NAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMER 561

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
              ISP  +HYA ++D++GRAG + EAR  I+ MP +P   +W+A+L  C I+GD E+G 
Sbjct: 562 DFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGA 621

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
           YAA++LF   P+    YIL++N YS +GRW + A+  K M++ GV KE G SWIE+  +V
Sbjct: 622 YAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKV 681

Query: 608 HSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           H F+V D  HP A  ++  L  +   M   GYVP+ +F L
Sbjct: 682 HVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFAL 721



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 37/311 (11%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI----- 91
           SK +  +    + LLS  A  G F  G S+H  FI+    F  +    V NA V      
Sbjct: 289 SKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKS 348

Query: 92  --------------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
                               WN++LS Y++   + NA ++F +MP +  +SW  MVSG++
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYV 408

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
             G  +     F +         D  ++   ++AC         K +H  +  CG+E   
Sbjct: 409 HGGLAEDALKLFNQMRSEDVKPCDY-TYAGAVAACGELGALKHGKQLHAHLVQCGFEASN 467

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           + GNAL+T Y +CG+    R VF  M   + ++W A+IS L Q+    E L+LF +M   
Sbjct: 468 SAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQ 527

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE------SALMDMYSKC 305
            I P+ +++L+ + AC+    + +G Q     +  +++ D  I       + L+D+  + 
Sbjct: 528 GIYPDRISFLTILTACNHAGLVDDGFQ-----YFESMERDFGISPGEDHYARLIDLLGRA 582

Query: 306 GSVEDAWQIFE 316
           G + +A  + +
Sbjct: 583 GRIGEARDLIK 593


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 222/675 (32%), Positives = 351/675 (52%), Gaps = 67/675 (9%)

Query: 41  LDNYVDIS-RLLSISAKEGHFHLGPSLHA----SFIKTFEPFDNQNVYNVPNATV-IWNS 94
           LD  + +S R+L    K  HF L  +L A       ++   F      N   + V + N+
Sbjct: 130 LDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNA 189

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           L++ Y +   + +A  +FD++  +   D +SWN++V+  ++          F     +  
Sbjct: 190 LVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVH 249

Query: 152 YQL-----DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            +      D  S   IL AC   +    +K IH      G   +  V NALI +Y KCGS
Sbjct: 250 EKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGS 309

Query: 207 --------------------------SSSGR-----KVFGEMRVRN----VITWTAVISG 231
                                     + SG+     ++F  MR  N    VITW+AVI+G
Sbjct: 310 MKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS- 290
             Q    +E L  F +M L    PNS+T +S + AC+ L AL +G + H    K  L S 
Sbjct: 370 YAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSL 429

Query: 291 -----------DLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNG 337
                      DL + +AL+DMYSKC S + A  IF      E + V+ TV++ G+AQ G
Sbjct: 430 DNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYG 489

Query: 338 FEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNP- 393
              +A++LF +M+     + PN   +S +L      +SL +GKQIH+ + +  ++ S+  
Sbjct: 490 DSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVY 549

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV N LI+MYSKCGD++ +  VF  M  RN VSW SM++ +  HG G +AL+++++M+  
Sbjct: 550 FVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKA 609

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  P D++FL LL+ACSH G+V++G+++   M   + +   A+HYACV+D++ R+G L +
Sbjct: 610 GFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDK 669

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   I+ MP++P   +W ALL AC +H + E+ +YA  KL   + ++   Y L++NIY+ 
Sbjct: 670 AWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYAT 729

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           + RWK+ A+  + MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +L  L+  
Sbjct: 730 ARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGR 789

Query: 634 MIDEGYVPNKRFILH 648
           +   GYVP   F LH
Sbjct: 790 IKVMGYVPETNFALH 804



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 141/546 (25%), Positives = 244/546 (44%), Gaps = 74/546 (13%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ YL C    +A+ + + +     V WN +V   +  G  D   G   R L  G  + 
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG-TKP 147

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +    L AC            H L+   G+E  V V NAL+  Y + GS      VF
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVF 207

Query: 215 GEMR---VRNVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSSVM 265
            E+    + +VI+W ++++  V+       L LF +M    H    N  S  ++ ++ + 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILP 267

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE------ 319
           AC+ L+AL + ++IH    +    +D  + +AL+D Y+KCGS++DA  +F   E      
Sbjct: 268 ACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVS 327

Query: 320 -----------------------------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
                                         LD ++ + ++ G+AQ G+ +EA+  F +M+
Sbjct: 328 WNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMI 387

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTS------------NPFV 395
             G E  PN V+ ++ +     SLG    G + H+  +K    S            +  V
Sbjct: 388 LYGSE--PNSVT-IISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVV 444

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEM--K 451
           +N LI+MYSKC   + +  +F+ +    RN V+W  MI  +A++G+   AL+L+ EM  K
Sbjct: 445 HNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISK 504

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGL 510
              V P   T   +L AC+H+  +  G +    +T  H         A C++DM  + G 
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGD 564

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMA 568
           +  AR+  + MP + +V  W +++    +HG  +      +K+  A   PD  +  +L+ 
Sbjct: 565 VDTARNVFDSMPKRNEV-SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL- 622

Query: 569 NIYSCS 574
             Y+CS
Sbjct: 623 --YACS 626



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/444 (24%), Positives = 194/444 (43%), Gaps = 62/444 (13%)

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           Y    ++G  ++ SY  CG++S    V   +     + W  ++   ++    +  + +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSC 138

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M      P+  T   ++ AC  L +   G   HG++     +S++ + +AL+ MYS+ G
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSG 198

Query: 307 SVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           S+EDA  +F+        D +S   I+    +      A+ LF +M     E   N  S 
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 364 VLGVFGV------DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           ++ +  +        +L   K+IHS  I++   ++ FV N LI+ Y+KCG ++D++ VF+
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 418 RMAPRNSVSWNSM-----------------------------------IAAFARHGNGFK 442
            M  ++ VSWN+M                                   IA +A+ G G +
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF-----------LKSMTEVHRI 491
           AL+ +++M L G EP  VT +SLL AC+ +G +++GME            L +       
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAA 550
                 +  ++DM  +      AR+    +P +  +V+ W  ++G  + +GDS      A
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSN----DA 494

Query: 551 EKLFLAQPDSPAPYILMANIYSCS 574
            KLF        PY +  N Y+ S
Sbjct: 495 LKLFSEMISK--PYAVAPNAYTIS 516


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 313/554 (56%), Gaps = 2/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + N LL  Y +  ++  A  LF+++  +D+V++NT+++G+ ++G +      F +  + 
Sbjct: 179 TVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQS 238

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G ++    +F+ +L A        + + +H L    G+  + +VGN ++  Y K      
Sbjct: 239 G-HKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLE 297

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F EM   + +++  VIS   Q + YEE L LF +M     +  +  + + +   + 
Sbjct: 298 TRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAAN 357

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L +L  GRQ+H         S L + ++L+DMY+KC   ++A  IF+   +   VS T +
Sbjct: 358 LSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTAL 417

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ Q G     ++LF KM  A +  D +  + VL       SL LGKQ+H+ II+S  
Sbjct: 418 ISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGN 477

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N F  +GL++MY+KCG ++D+++VF  M  RN+VSWN++I+A+A +G+G  A+  + +
Sbjct: 478 LENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTK 537

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G++P  V+ L +L ACSH G V +G EF ++M+ ++ I+P+ +HYAC++D++GR G
Sbjct: 538 MIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNG 597

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMA 568
              EA   ++ MP +PD ++W ++L AC I+ +  + + AAE+LF + +    A Y+ M+
Sbjct: 598 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMS 657

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G+W+      K M+E G+ K    SW+E+  ++H F  +D+ HP  D I   + 
Sbjct: 658 NIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKIN 717

Query: 629 ELLRLMIDEGYVPN 642
           EL   +  EGY P+
Sbjct: 718 ELTTEIEREGYKPD 731



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 231/485 (47%), Gaps = 25/485 (5%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK---R 145
           TV  N+++S Y+K   + +A  LFD MP R  V+W  ++  +  N  FD  F  F+   R
Sbjct: 75  TVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCR 134

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV--TVGNALITSYFK 203
           S  L     D  +FT +L  C+ +        +H      G++  +  TV N L+ SY +
Sbjct: 135 SCTLP----DYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCE 190

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
                    +F E+  ++ +T+  +I+G  ++ LY E + LF+KM      P+  T+   
Sbjct: 191 VRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGV 250

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + A  GL     G+Q+HG+        D  + + ++  YSK   V +   +F    ELD 
Sbjct: 251 LKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDF 310

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           VS  V++  ++Q    EE++ LF +M   G +      + +L +    +SL +G+Q+H  
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQ 370

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I +   S   V N L++MY+KC   +++  +F  ++ R++VSW ++I+ + + G     
Sbjct: 371 AIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAG 430

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-- 501
           L+L+ +M+   +     TF ++L A +       G   L    ++H    R+ +   V  
Sbjct: 431 LKLFTKMRGANLRADQSTFATVLKASA-------GFASLLLGKQLHAFIIRSGNLENVFS 483

Query: 502 ----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA- 556
               VDM  + G + +A    E MP + + + W AL+ A + +GD E    A  K+  + 
Sbjct: 484 GSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAYADNGDGEAAIGAFTKMIQSG 542

Query: 557 -QPDS 560
            QPDS
Sbjct: 543 LQPDS 547



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%)

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N    N +I+ Y K GDL  +  +F  M  R  V+W  ++  +A + +  +A +L+ +M 
Sbjct: 74  NTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMC 133

Query: 452 LEGVEPTDVTFLSLLHACS 470
                P  VTF +LL  C+
Sbjct: 134 RSCTLPDYVTFTTLLPGCN 152



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 42/73 (57%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +++ + IIK+ F ++   +N  +    + G +  ++KV+  M  +N+VS N+MI+ + + 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 438 GNGFKALELYEEM 450
           G+   A  L++ M
Sbjct: 89  GDLSSARHLFDAM 101


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 176/455 (38%), Positives = 272/455 (59%), Gaps = 1/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LI 253
           N +I  Y K G     RK+F EM  R+  +W A ISG V +    E L+LF  M      
Sbjct: 157 NTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERS 216

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
           + N  T  S++ A + +  L  G++IHG L +  L  D  + SAL+D+Y KCGS+++A  
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARG 276

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           IF+  ++ D VS T ++    ++G  EE   LF  ++++G+  +    + VL       +
Sbjct: 277 IFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAA 336

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
             LGK++H  ++ + +    F  + L++MYSKCG+   + +VF+ M   + VSW S+I  
Sbjct: 337 EHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVG 396

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A++G   +AL  +E +   G +P  VT++ +L AC+H GLV+KG+E+  S+ E H +  
Sbjct: 397 YAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMH 456

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
            A+HYACV+D++ R+G   EA + I+ MPVKPD  +W +LLG C IHG+ E+ K AA+ L
Sbjct: 457 TADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKAL 516

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           +  +P++PA YI +ANIY+ +G W E A   K M  MG+ K+ G SWIEI++QVH F+V 
Sbjct: 517 YEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVG 576

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HP+   IH  L EL + + +EGYVP+  F+LH
Sbjct: 577 DTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLH 611



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 194/408 (47%), Gaps = 27/408 (6%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK------R 145
           WN+++  Y K  ++  A KLFD+MP RD  SWN  +SG++ + +       F+      R
Sbjct: 156 WNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHER 215

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           S    F      + +  +  C R     + K IH  +       +  V +AL+  Y KCG
Sbjct: 216 SSSNKFTLSSALAASAAI-PCLR-----LGKEIHGYLIRTELNLDEVVWSALLDLYGKCG 269

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S    R +F +M+ R+V++WT +I    ++   EEG  LF  +    + PN  T+   + 
Sbjct: 270 SLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLN 329

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+   A   G+++HG +            SAL+ MYSKCG+   A ++F    + D VS
Sbjct: 330 ACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVS 389

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IH 381
            T ++VG+AQNG  +EA+  F  ++++G +  P+ V+ V GV    T  GL  +     H
Sbjct: 390 WTSLIVGYAQNGQPDEALHFFELLLQSGTK--PDQVTYV-GVLSACTHAGLVDKGLEYFH 446

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNG 440
           S+  K            +I++ ++ G  +++  +   M  + +   W S++     HGN 
Sbjct: 447 SIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGN- 505

Query: 441 FKALELYEEM--KLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSM 485
              LEL +     L  +EP +  T+++L +  ++ GL ++     K M
Sbjct: 506 ---LELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDM 550



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 150/321 (46%), Gaps = 17/321 (5%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   I+T    D           V+W++LL  Y KC  +  A  +FD M  RD V
Sbjct: 238 LGKEIHGYLIRTELNLDE----------VVWSALLDLYGKCGSLDEARGIFDQMKDRDVV 287

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW TM+     +G  + GF  F+  ++ G  + ++ +F  +L+AC       + K +H  
Sbjct: 288 SWTTMIHRCFEDGRREEGFLLFRDLMQSGV-RPNEYTFAGVLNACADHAAEHLGKEVHGY 346

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           +   GY+      +AL+  Y KCG++   R+VF EM   ++++WT++I G  QN   +E 
Sbjct: 347 MMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEA 406

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESALMD 300
           L  F  +      P+ +TY+  + AC+    + +G +  H I  K  L       + ++D
Sbjct: 407 LHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVID 466

Query: 301 MYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           + ++ G  ++A  I +    + D      +L G   +G     ++L  +  KA  EI+P 
Sbjct: 467 LLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHG----NLELAKRAAKALYEIEPE 522

Query: 360 MVSAVLGVFGVDTSLGLGKQI 380
             +  + +  +  + GL  ++
Sbjct: 523 NPATYITLANIYANAGLWSEV 543



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 156/375 (41%), Gaps = 38/375 (10%)

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
           L Q +  +E ++L   +H     P++  Y + + AC   +AL  GR++H           
Sbjct: 65  LCQQKRVKEAVEL---LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPG 121

Query: 292 LCIESALMDMYSKCG-------------------------------SVEDAWQIFEFAEE 320
           + I + L+DMY+KCG                                +E A ++F+   +
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQ 379
            D  S    + G+  +    EA++LF  M +           +           L LGK+
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH  +I+++   +  V + L+++Y KCG L+++  +F +M  R+ VSW +MI      G 
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +   L+ ++   GV P + TF  +L+AC+     + G E    M       P +   +
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHA-GYDPGSFAIS 360

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +V M  + G    AR     M  +PD++ W +L+   + +G  +   +  E L L    
Sbjct: 361 ALVHMYSKCGNTRVARRVFNEMH-QPDLVSWTSLIVGYAQNGQPDEALHFFE-LLLQSGT 418

Query: 560 SPAPYILMANIYSCS 574
            P     +  + +C+
Sbjct: 419 KPDQVTYVGVLSACT 433



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 109/248 (43%), Gaps = 42/248 (16%)

Query: 340 EEAMQLFV--KMVKAGIEI--------DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           EEA+ +    K VK  +E+           + S ++       +L LG+++H+    S+F
Sbjct: 59  EEAVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNF 118

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
               F++N L++MY+KCG L D+  +F  M  R+  SWN+MI  +A+ G   +A +L++E
Sbjct: 119 VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDE 178

Query: 450 MK--------------LEGVEPTDVTFLSLLHACSHVGLVNK-----------GMEFLKS 484
           M               +   +P +   L  +         NK            +  L+ 
Sbjct: 179 MPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRL 238

Query: 485 MTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             E+H    R E       ++ ++D+ G+ G L EAR   ++M  + DV+ W  ++  C 
Sbjct: 239 GKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR-DVVSWTTMIHRCF 297

Query: 539 IHGDSEMG 546
             G  E G
Sbjct: 298 EDGRREEG 305


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/618 (31%), Positives = 334/618 (54%), Gaps = 28/618 (4%)

Query: 39  LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
           +V D ++ ++ L++   K      G  LH   I T    D      +P    +  +LL  
Sbjct: 6   IVADKFI-VTSLVAACTKLQALEEGRRLHEHLIITGFRTD------IP----LETALLQM 54

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  + +A ++F+ M ++D  +W++++S + R G  +M    ++R +  G  + +  +
Sbjct: 55  YAKCGSLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGV-EPNVVT 113

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F   L  C         + IH  +      ++  + ++L+  Y KC      RKVF  M+
Sbjct: 114 FACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMK 173

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGR 277
            RNV ++TA+IS  VQ   + E L+LF +M  +  I PN+ T+ + + A  GL  L +GR
Sbjct: 174 ARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 233

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           ++H  L      +++ +++AL+ MY KCGS  +A ++F+     + +S T ++  +AQ+G
Sbjct: 234 KVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHG 293

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
             +EA+ LF +M     +++P+ VS  + L    +  +L  G++IH  ++++   S P +
Sbjct: 294 NPQEALNLFKRM-----DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLAS-PQM 347

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
              L++MY++CG L+D+ +VF+RM  R++ S N+MIAAF +HG   +AL +Y  M+ EG+
Sbjct: 348 ETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGI 407

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
               +TF+S+L ACSH  LV    +F +S+   H + P  EHY C+VD++GR+G L +A 
Sbjct: 408 PADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAE 467

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
             +E MP + D + W  LL  C  HGD   G+ AA K+F   P    PY+ ++N+Y+ + 
Sbjct: 468 ELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAK 527

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA-------DTIHGVLA 628
           R+ +  +  K M+E GV     +S+IEI+ ++H F    +   Q        + +  +L 
Sbjct: 528 RFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLL 587

Query: 629 ELLRLMIDEGYVPNKRFI 646
           ELL  M   GYVP+ R +
Sbjct: 588 ELLEPMKQAGYVPDTREV 605



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 34/233 (14%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M + GI  D  +V++++       +L  G+++H  +I + F ++  +   L+ MY+KCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L+D+ +VF  M  ++  +W+S+I+A+AR G G  A+ LY  M  EGVEP  VTF   L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 469 CSHVGLVNKGME-----------------------FLK--SMTEVHRI-----SPRAEHY 498
           C+ V  +  G                         +LK   M E  ++     +     Y
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 499 ACVVDMVGRAGLLIEARSFIERM----PVKPDVLVWQALLGACSIHGDSEMGK 547
             ++    +AG   EA     RM     ++P+   +  +LGA    G+ E G+
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGR 233


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 299/517 (57%), Gaps = 3/517 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL++ Y+ C +M  A ++FD M  R  VSWNTM++G+ +NG        F   +  G
Sbjct: 160 VQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKG 219

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D A+   +L  C   +   V + +H LV +    E+++V N+L+  Y KCG+    
Sbjct: 220 I-EPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEA 278

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + +F EM  R+V++WT +++G + N      L L   M    + PN +T  S + AC+ L
Sbjct: 279 QMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASL 338

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  GR +HG   +  L+S++ +E+AL+DMY+KC +V  ++++F    +        I+
Sbjct: 339 YSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAII 398

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G   NG   +A++LF +M+   ++ +   ++++L  +   T L   + +H  +I+S F 
Sbjct: 399 SGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFL 458

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS--VSWNSMIAAFARHGNGFKALELYE 448
           S   V   LI++YSKCG LE +  +F+ +  ++   ++W+++IA +  HG+G  A+ L++
Sbjct: 459 SRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFD 518

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   GV+P ++TF S+LHACSH GLV++G+   K M E +++S R +HY CV+D++GRA
Sbjct: 519 QMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRA 578

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   I  M  +P+  VW ALLG+C IH + E+G+ AA+ LF  +P +   Y+L+A
Sbjct: 579 GRLEEAYELIRTMAFRPNHAVWGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLA 638

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           NIYS  GRW++       M  +G+ K    S IE+  
Sbjct: 639 NIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSLIEVRN 675



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/462 (29%), Positives = 235/462 (50%), Gaps = 6/462 (1%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           P +  + +SL + Y  C    +A KLFD++      SWN M+  +  +G      G F +
Sbjct: 53  PYSHHLLSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQ 112

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            L  G    D  ++  ++ AC    L  +  +IH    + G++ +  V N+L+  Y  CG
Sbjct: 113 MLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCG 172

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                R+VF  MR R +++W  +I+G  +N   +E L +F  M    I P+  T +S + 
Sbjct: 173 EMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLP 232

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            CS L+ L  GR++H ++    L  D+ + ++L+DMY+KCG++++A  IF   ++ D VS
Sbjct: 233 VCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVS 292

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
            T ++ G+  NG    A+ L  +M++    + PN V+  +VL       SL  G+ +H  
Sbjct: 293 WTTMMNGYILNGDARSAL-LLCQMMQFE-SVKPNFVTLASVLSACASLYSLKHGRCLHGW 350

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            I+    S   V   LI+MY+KC ++  S +VFS+ + + +  WN++I+    +G   KA
Sbjct: 351 AIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKA 410

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           +EL+++M +E V+P D T  SLL A + +  + +       +     +S R E    ++D
Sbjct: 411 IELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLS-RIEVATILID 469

Query: 504 MVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSE 544
           +  + G L  A +    +P K  D++ W A++    +HG  E
Sbjct: 470 IYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGE 511



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 185/368 (50%), Gaps = 17/368 (4%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V N+     +WNSLL  Y KC  M  A  +F +M  RD VSW TM++G++ NG+      
Sbjct: 252 VKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSAL- 310

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
              + ++    + +  +   +LSAC         + +H        E EV V  ALI  Y
Sbjct: 311 LLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMY 370

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KC + +   +VF +   +    W A+ISG + N L  + ++LF +M +  ++PN  T  
Sbjct: 371 AKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLN 430

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF--AE 319
           S + A + L  L + R +HG L +    S + + + L+D+YSKCGS+E A  IF     +
Sbjct: 431 SLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKK 490

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLG 375
           + D ++ + I+ G+  +G  E A+ LF +MV++G++ +    +++L        VD  LG
Sbjct: 491 DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLG 550

Query: 376 LGK---QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMI 431
           L K   + + + +++D  +       +I++  + G LE++ ++   MA R N   W +++
Sbjct: 551 LFKFMLEDNQMSLRTDHYT------CVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALL 604

Query: 432 AAFARHGN 439
            +   H N
Sbjct: 605 GSCVIHEN 612


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 195/590 (33%), Positives = 318/590 (53%), Gaps = 13/590 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LH   IK+   +D+          +  N+L+S Y +  Q+ +A  +F  +  
Sbjct: 272 GDIDLGRQLHGHVIKS--GYDHH--------LIAQNALISMYTRFGQIVHASDVFTMIST 321

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           +D +SW +M++GF + G        F+     GFYQ ++  F  + SAC         + 
Sbjct: 322 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQ 381

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH +    G    V  G +L   Y K G   S  + F ++   ++++W A+I+    +  
Sbjct: 382 IHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGD 441

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E +  F +M H GL+ P+ +T+LS + AC     + +G QIH  + K+ L  +  + +
Sbjct: 442 VNEAIYFFCQMMHTGLM-PDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCN 500

Query: 297 ALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +L+ MY+KC ++ DA+ +F + +E  + VS   IL    Q+    E  +LF  M+ +  +
Sbjct: 501 SLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENK 560

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   ++ +LG      SL +G Q+H   +KS    +  V+N LI+MY+KCG L+ +  V
Sbjct: 561 PDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDV 620

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F      + VSW+S+I  +A+ G G +AL L+  MK  GV+P +VT+L +L ACSH+GLV
Sbjct: 621 FGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLV 680

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +G  F  +M     I P  EH +C+VD++ RAG L EA +FI++M   PD+ +W+ LL 
Sbjct: 681 EEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLA 740

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           +C  HG+ ++ + AAE +    P + A  +L++NI++  G WKE A+    MK+MGV K 
Sbjct: 741 SCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKV 800

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
            G SWI ++ Q+H F  +D  H Q   I+ +L +L   M+D+GY P +R 
Sbjct: 801 PGQSWIAVKDQIHVFFSEDNSHQQRGDIYTMLEDLWLQMLDDGYDPCQRL 850



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/453 (29%), Positives = 220/453 (48%), Gaps = 17/453 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N +L+ Y KC  +++A K FD M +R+ VSW  M+SG+ +NG+ +     + + L+ 
Sbjct: 193 VLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQS 252

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G++  D  +F  I+ AC  +    + + +H  V   GY+  +   NALI+ Y + G    
Sbjct: 253 GYFP-DPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVH 311

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
              VF  +  +++I+W ++I+G  Q     E L LF  M   G   PN   + S   AC 
Sbjct: 312 ASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACR 371

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L     GRQIHG+  K  L  ++    +L DMY+K G +  A + F   E  D VS   
Sbjct: 372 SLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNA 431

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+  F+ +G   EA+  F +M+  G+  D     ++L   G   ++  G QIHS IIK  
Sbjct: 432 IIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIG 491

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELY 447
                 V N L+ MY+KC +L D+  VF  ++   N VSWN++++A  +H    +   L+
Sbjct: 492 LDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLF 551

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------ 501
           + M     +P ++T  ++L  C+ +  +  G        +VH  S ++     V      
Sbjct: 552 KLMLFSENKPDNITITTILGTCAELASLEVG-------NQVHCFSVKSGLVVDVSVSNRL 604

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +DM  + G L  AR         PD++ W +L+
Sbjct: 605 IDMYAKCGSLKHARDVFGSTQ-NPDIVSWSSLI 636



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 199/398 (50%), Gaps = 20/398 (5%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           QL+ +++  ++ AC         K IH  +     + ++ + N ++  Y KCGS    RK
Sbjct: 154 QLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARK 213

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  M++RNV++WT +ISG  QN    + + ++++M      P+ LT+ S + AC     
Sbjct: 214 AFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGD 273

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  GRQ+HG + K      L  ++AL+ MY++ G +  A  +F      D +S   ++ G
Sbjct: 274 IDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITG 333

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG-VFGVDTSL---GLGKQIHSLIIKSD 388
           F Q G+E EA+ LF  M + G    PN    + G VF    SL     G+QIH +  K  
Sbjct: 334 FTQLGYEIEALYLFRDMFRQGF-YQPN--EFIFGSVFSACRSLLEPEFGRQIHGMCAKFG 390

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N F    L +MY+K G L  +I+ F ++   + VSWN++IAAF+  G+  +A+  + 
Sbjct: 391 LGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFC 450

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHYAC--VV 502
           +M   G+ P  +TFLSLL AC     +N+G       T++H    +I    E   C  ++
Sbjct: 451 QMMHTGLMPDGITFLSLLCACGSPVTINQG-------TQIHSYIIKIGLDKEAAVCNSLL 503

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            M  +   L +A +  + +    +++ W A+L AC  H
Sbjct: 504 TMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQH 541



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 176/330 (53%), Gaps = 8/330 (2%)

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           ++  + I+ + + + Y E L  F   H     I   S TY + ++AC+ +++L  G++IH
Sbjct: 122 LSTNSYINLMCKQRHYREALDTF-NFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIH 180

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             + K   Q DL +++ +++MY KCGS++DA + F+  +  + VS T+++ G++QNG E 
Sbjct: 181 DHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEN 240

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +A+ ++++M+++G   DP    +++    +   + LG+Q+H  +IKS +  +    N LI
Sbjct: 241 DAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALI 300

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTD 459
           +MY++ G +  +  VF+ ++ ++ +SW SMI  F + G   +AL L+ +M  +G  +P +
Sbjct: 301 SMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNE 360

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFI 518
             F S+  AC  +     G + +  M     +         + DM  + G L  A R+F 
Sbjct: 361 FIFGSVFSACRSLLEPEFGRQ-IHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFY 419

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           +     PD++ W A++ A S  GD     Y
Sbjct: 420 QIE--SPDLVSWNAIIAAFSDSGDVNEAIY 447


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 201/599 (33%), Positives = 333/599 (55%), Gaps = 30/599 (5%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           ++ +V D +   + L      EG F LG  L ++ +K+           + +  V+ NS 
Sbjct: 92  SAGVVFDAFTYSTALSFCVGSEG-FRLGLQLQSTVVKS----------GLESDLVVGNSF 140

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y +    R A ++FD+MP +D +SWN+++SG  + G F        R +     +LD
Sbjct: 141 ITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELD 200

Query: 156 QASFT-IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             SFT +I + C  ++L L ++ IH L    GYE  + VGN L++ Y KCG   + + VF
Sbjct: 201 HVSFTSVITTCCHETDLKL-ARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVF 259

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNV++WT +IS    N+  ++ + +F+ M L  + PN +T++  + A    + + 
Sbjct: 260 YQMSERNVVSWTTMIS---SNR--DDAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIK 314

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           EG +IHG+  K    S+  + ++ + MY+K  ++EDA + F+     + +S   ++ GFA
Sbjct: 315 EGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFA 374

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGV--FGVDTSLGLGKQIHSLIIKSDFT 390
           QNGF  EA+++F+    A  E  PN  +  +VL    F  D S+  G++ H+ ++K    
Sbjct: 375 QNGFSHEALKMFLS---ATAETMPNEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLN 431

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S P V++ L++MY+K G++ +S KVF+ M+ RN   W S+I+A++ HG+    + L+ EM
Sbjct: 432 SCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQFVWTSIISAYSSHGDFNSVMNLFHEM 491

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V P  VTFLS+L AC+  G+V+KG E L  M E + + P  EHY+C+VDM+GRAG 
Sbjct: 492 IKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLGRAGR 551

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   +  +P  P   + Q++LG+C +HG+ +MG   AE     +P+    Y+ M NI
Sbjct: 552 LKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNI 611

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK-----QVHSFVVDDKMHPQADTIH 624
           Y+   +W + A+  K M++  V KE G SWI++        +  F   DK HP++D I+
Sbjct: 612 YAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIY 670



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 227/461 (49%), Gaps = 27/461 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+++  Y K  +  NA+ +F+++   D VSWNT++SGF  N    +   F  R    G
Sbjct: 38  VSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAG 94

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +++  LS C  SE   +   +   V   G E ++ VGN+ IT Y + GS    
Sbjct: 95  VV-FDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGA 153

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           R+VF EM  +++I+W +++SGL Q   +  E + +F  M    +  + +++ S +  C  
Sbjct: 154 RRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCH 213

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L   RQIHG+  K   +S L + + LM  YSKCG +E    +F    E + VS T +
Sbjct: 214 ETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTM 273

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKS 387
           +     +   ++A+ +F+ M   G+   PN V+ V  L     +  +  G +IH L IK+
Sbjct: 274 I-----SSNRDDAVSIFLNMRLDGVY--PNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKT 326

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F S P V N  I MY+K   LED+ K F  +  R  +SWN+MI+ FA++G   +AL+++
Sbjct: 327 GFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMF 386

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV----- 502
                E + P + TF S+L+A +    ++     +K     H    +    +C V     
Sbjct: 387 LSATAETM-PNEYTFGSVLNAIAFAEDIS-----VKHGQRCHAHLLKLGLNSCPVVSSAL 440

Query: 503 -DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            DM  + G + E+      M  + +  VW +++ A S HGD
Sbjct: 441 LDMYAKRGNINESEKVFNEMS-QRNQFVWTSIISAYSSHGD 480



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 209/411 (50%), Gaps = 17/411 (4%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D+ +  + L AC R +L    + IH     CG+   V V NA++  Y K G   +   +
Sbjct: 1   MDEVTLCLALKAC-RGDLKRGCQ-IHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +   +V++W  ++SG   NQ+    L   V+M    +  ++ TY +++  C G +  
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G Q+   + K  L+SDL + ++ + MYS+ GS   A ++F+     D +S   +L G 
Sbjct: 116 RLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGL 175

Query: 334 AQNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +Q G F  EA+ +F  M++ G+E+D    ++V+     +T L L +QIH L IK  + S 
Sbjct: 176 SQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L++ YSKCG LE    VF +M+ RN VSW +MI++     N   A+ ++  M+L
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISS-----NRDDAVSIFLNMRL 290

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV P +VTF+ LL+A      + +G++      +   +S  +   +  + M  +   L 
Sbjct: 291 DGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS-FITMYAKFEALE 349

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           +A+   + +  + +++ W A++   + +G S    + A K+FL+      P
Sbjct: 350 DAKKAFDDITFR-EIISWNAMISGFAQNGFS----HEALKMFLSATAETMP 395


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 199/546 (36%), Positives = 304/546 (55%), Gaps = 4/546 (0%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           Q+  A KLFD+    D   WN ++  + RN  +      ++     G +  D  +F  +L
Sbjct: 103 QICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHP-DGFTFPYVL 161

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC       +S +IH  +   G+  +V V N L+  Y KCG     + VF  +  R ++
Sbjct: 162 KACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIV 221

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +WT++ISG  QN    E L++F +M    + P+ +  +S + A + +  L +GR IHG +
Sbjct: 222 SWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV 281

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K+ L+ +  +  +L   Y+KCG V  A   F+  +  + +    ++ G+A+NG  EEA+
Sbjct: 282 IKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAV 341

Query: 344 QLFVKMVKAGIEIDPNMV-SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
            LF  M+   I+ D   V SAVL    V  SL L + +   + KS++ S+ FVN  LI+M
Sbjct: 342 NLFHYMISRNIKPDSVTVRSAVLASAQVG-SLELAQWMDDYVSKSNYGSDIFVNTSLIDM 400

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG +E + +VF R + ++ V W++MI  +  HG G++A+ LY  MK  GV P DVTF
Sbjct: 401 YAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTF 460

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + LL AC+H GLV +G E    M +   I PR EHY+CVVD++GRAG L EA +FI ++P
Sbjct: 461 IGLLTACNHSGLVKEGWELFHCMKDF-EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIP 519

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++P V VW ALL AC I+    +G+YAA KLF   P +   Y+ ++N+Y+ S  W   A 
Sbjct: 520 IEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAH 579

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
               M+E G++K+ G S IEI  ++ +F V DK HP A  I   L  L R + + G+VP 
Sbjct: 580 VRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPY 639

Query: 643 KRFILH 648
              +LH
Sbjct: 640 TESVLH 645



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 8/367 (2%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  + + G +    +   L+      G     RK+F E    +V  W A+I    +N +
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           Y + ++++  M    ++P+  T+   + AC+ L        IHG + K    SD+ +++ 
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+ +Y+KCG +  A  +F+       VS T I+ G+AQNG   EA+++F +M   G++ D
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              + ++L  +     L  G+ IH  +IK      P +   L   Y+KCG +  +   F 
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFD 314

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           +M   N + WN+MI+ +A++G+  +A+ L+  M    ++P  VT  S + A + VG    
Sbjct: 315 QMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVG---- 370

Query: 478 GMEFLKSMTEVHRISPRAEHY---ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            +E  + M +    S           ++DM  + G +  AR   +R   K DV++W A++
Sbjct: 371 SLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK-DVVMWSAMI 429

Query: 535 GACSIHG 541
               +HG
Sbjct: 430 MGYGLHG 436



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 153/297 (51%), Gaps = 4/297 (1%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   + N L++ Y KC  +  A  +FD +  R  VSW +++SG+ +NG+       
Sbjct: 183 YGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRM 242

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F +    G      A  +I+ +  D  +L    + IH  V   G E+E  +  +L   Y 
Sbjct: 243 FSQMRNNGVKPDWIALVSILRAYTDVDDLEQ-GRSIHGFVIKMGLEDEPALLISLTAFYA 301

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG  +  +  F +M+  NVI W A+ISG  +N   EE + LF  M    I P+S+T  S
Sbjct: 302 KCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS 361

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +V+A + + +L   + +   + K    SD+ + ++L+DMY+KCGSVE A ++F+   + D
Sbjct: 362 AVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKD 421

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
            V  + +++G+  +G   EA+ L+  M +AG+   PN V+  +G+       GL K+
Sbjct: 422 VVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVF--PNDVT-FIGLLTACNHSGLVKE 475



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 130/267 (48%), Gaps = 2/267 (0%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QIH  L    LQ +  + + L++  S  G +  A ++F+     D      I+  +++N 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              + ++++  M   G+  D      VL         GL   IH  IIK  F S+ FV N
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           GL+ +Y+KCG +  +  VF  +  R  VSW S+I+ +A++G   +AL ++ +M+  GV+P
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP 253

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             +  +S+L A + V  + +G      + ++  +         +     + GL+  A+SF
Sbjct: 254 DWIALVSILRAYTDVDDLEQGRSIHGFVIKM-GLEDEPALLISLTAFYAKCGLVTVAKSF 312

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
            ++M    +V++W A++   + +G +E
Sbjct: 313 FDQMKT-TNVIMWNAMISGYAKNGHAE 338



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 1/218 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL +FY KC  +  A   FD M   + + WN M+SG+ +NG  +     F   +      
Sbjct: 295 SLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKP 354

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
                 + +L++     L L   M    V    Y  ++ V  +LI  Y KCGS    R+V
Sbjct: 355 DSVTVRSAVLASAQVGSLELAQWMDD-YVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRV 413

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F     ++V+ W+A+I G   +    E + L+  M    + PN +T++  + AC+    +
Sbjct: 414 FDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLV 473

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            EG ++   +    +       S ++D+  + G + +A
Sbjct: 474 KEGWELFHCMKDFEIVPRNEHYSCVVDLLGRAGYLGEA 511


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 306/552 (55%), Gaps = 13/552 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTV-SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
           Y KC+QM  A+ +F D      V ++N ++SGF+ NG  + GF F+++    G    D+ 
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMP-DKF 60

Query: 158 SFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +F   + AC D  E+    K IH L++  G E +V +G+AL+  Y K G     +  F E
Sbjct: 61  TFPCAIKACLDVLEI----KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEE 116

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           + +R+V+ W A+++G  Q   +E  L+ F +M+   + P+  T    +   + +  L  G
Sbjct: 117 LPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNG 176

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           R IHG   K+   S + + ++L+DMY KC  +EDA +IFE   E D  S   I     Q 
Sbjct: 177 RIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQC 236

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF------T 390
           G  +  ++L  +M+ AGI+ D   V+ VL       +L  G++IH  +I S         
Sbjct: 237 GDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDI 296

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  + N +I+MY+KCG + D+  VF RM  ++  SWN MI  +  HG G +ALE++  M
Sbjct: 297 DDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRM 356

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               ++P +VTF+ +L ACSH G V++G  FL  M   + ++P  EHY CV+DM+GRAG 
Sbjct: 357 CEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQ 416

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA      MP++ + +VW+ALL AC +H  + + + AA+++F  +P+    Y+LM+N+
Sbjct: 417 LDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNV 476

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y   GR++E  +    M++  V K  G SWIE++  VH FV  D+ HP+A +I+  L  L
Sbjct: 477 YGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSL 536

Query: 631 LRLMIDEGYVPN 642
              + + GYVP+
Sbjct: 537 TARLCEHGYVPD 548



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 190/360 (52%), Gaps = 19/360 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L++ YLK   M +A   F+++P+RD V WN MV+G+ + G+F+M    F+R   + 
Sbjct: 93  IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR---MN 149

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +  + FT+  ILS           ++IH      GY+  V V N+LI  Y KC    
Sbjct: 150 DESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE 209

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              ++F  MR +++ +W ++ S   Q   ++  L+L  +M    I P+ +T  + + ACS
Sbjct: 210 DALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACS 269

Query: 269 GLQALCEGRQIHGILWKLALQ------SDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            L AL  GR+IHG +    L        D+ +++A++DMY+KCGS+ DA  +FE     D
Sbjct: 270 HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKD 329

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             S  ++++G+  +G+  EA+++F +M +  +++ P+ V+ V GV    +  G   Q  +
Sbjct: 330 VASWNIMIMGYGMHGYGNEALEMFSRMCE--VQLKPDEVTFV-GVLSACSHAGFVSQGRN 386

Query: 383 LI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
            +  +KS +   P + +   +I+M  + G L+++ ++   M    N V W +++AA   H
Sbjct: 387 FLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 446



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 134/285 (47%), Gaps = 24/285 (8%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ +   ++ +LS+ A  G  + G  +H   +K              +   + NSL+  Y
Sbjct: 153 VVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKM----------GYDSGVAVSNSLIDMY 202

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +A+++F+ M  +D  SWN++ S   + G+ D       R L  G  Q D  + 
Sbjct: 203 GKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGI-QPDLVTV 261

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYE------EEVTVGNALITSYFKCGSSSSGRKV 213
           T +L AC      +  + IH  + + G        ++V + NA+I  Y KCGS      V
Sbjct: 262 TTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLV 321

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  ++V +W  +I G   +    E L++F +M    + P+ +T++  + ACS    +
Sbjct: 322 FERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFV 381

Query: 274 CEGRQIHGILWKLALQSDLC--IE--SALMDMYSKCGSVEDAWQI 314
            +GR     L ++  + D+   IE  + ++DM  + G +++A+++
Sbjct: 382 SQGRN---FLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 423



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 10/147 (6%)

Query: 402 MYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           MYSKC  +  ++ +FS      N  ++N++I+ F  +G   +  E Y++M+ EGV P   
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 461 TFLSLLHACSHVGLVNK--GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
           TF   + AC  V  + K  G+ F K   E+      A     +V+   + GL+  A+   
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLF-KFGLELDVFIGSA-----LVNCYLKFGLMEHAQVAF 114

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEM 545
           E +P++ DV++W A++   +  G  EM
Sbjct: 115 EELPIR-DVVLWNAMVNGYAQIGQFEM 140


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 175/494 (35%), Positives = 284/494 (57%), Gaps = 5/494 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +++ ++  C         K +H  ++  GY  +  + N LI  Y K       + +F
Sbjct: 284 DSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLF 343

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNV++WT +IS     QL +  ++L   M    + PN  T+ S + AC  L  L 
Sbjct: 344 DKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL- 402

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             +Q+H  + K+ L+SD+ + SAL+D+YSK G + +A ++F      D V    I+  FA
Sbjct: 403 --KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFA 460

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q+   +EA+ L+  M + G   D + +++VL      + L LG+Q H  ++K  F  +  
Sbjct: 461 QHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK--FDQDLI 518

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN L++MY KCG LED+  +F+RMA ++ +SW++MIA  A++G   +AL L+E MK++G
Sbjct: 519 LNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQG 578

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
            +P  +T L +L ACSH GLVN+G  + +SM  ++ I P  EHY C++D++GRA  L + 
Sbjct: 579 PKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDM 638

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              I  M  +PDV+ W+ LL AC    + ++  YAA+++    P     Y+L++NIY+ S
Sbjct: 639 VKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAIS 698

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            RW + A+  + MK+ G+ KE G SWIE+ KQ+H+F++ DK HPQ D I+  L + +  +
Sbjct: 699 KRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRL 758

Query: 635 IDEGYVPNKRFILH 648
              GYVP+  F+L 
Sbjct: 759 AGAGYVPDTNFVLQ 772



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 186/389 (47%), Gaps = 17/389 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N L++ Y+K + +  A  LFD MP R+ VSW TM+S +      D           
Sbjct: 320 TFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFR 379

Query: 149 LGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            G    +  +F+ +L AC+R  +L    K +H  +   G E +V V +ALI  Y K G  
Sbjct: 380 DGVMP-NMFTFSSVLRACERLYDL----KQLHSWIMKVGLESDVFVRSALIDVYSKMGEL 434

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               KVF EM   + + W ++I+   Q+   +E L L+  M       +  T  S + AC
Sbjct: 435 LEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRAC 494

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  GRQ H  +  L    DL + +AL+DMY KCGS+EDA  IF    + D +S +
Sbjct: 495 TSLSLLELGRQAH--VHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWS 552

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLII 385
            ++ G AQNGF  EA+ LF  M   G +  PN ++ +LGV    +  GL  +   +   +
Sbjct: 553 TMIAGLAQNGFSMEALNLFESMKVQGPK--PNHIT-ILGVLFACSHAGLVNEGWYYFRSM 609

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMI-AAFARHGNGF 441
            + +  +P   +   ++++  +   L+D +K+   M    + V+W +++ A  AR     
Sbjct: 610 NNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDL 669

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACS 470
                 E +KL+  +      LS ++A S
Sbjct: 670 ATYAAKEILKLDPQDTGAYVLLSNIYAIS 698



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 17/209 (8%)

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           AM +   M + G+  D    S ++       ++  GK++H  I  + +    F+ N LIN
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY K   LE++  +F +M  RN VSW +MI+A++      +A+ L   M  +GV P   T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHY--ACVVDMVGRAGLLIEAR 515
           F S+L AC          E L  + ++H    ++   ++ +  + ++D+  + G L+EA 
Sbjct: 389 FSSVLRAC----------ERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEAL 438

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSE 544
                M +  D +VW +++ A + H D +
Sbjct: 439 KVFREM-MTGDSVVWNSIIAAFAQHSDGD 466



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   H   +K    FD   + N        N+LL  Y KC  + +A  +F+ M  +D +
Sbjct: 502 LGRQAHVHVLK----FDQDLILN--------NALLDMYCKCGSLEDAKFIFNRMAKKDVI 549

Query: 122 SWNTMVSGFLRNG 134
           SW+TM++G  +NG
Sbjct: 550 SWSTMIAGLAQNG 562


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/550 (35%), Positives = 309/550 (56%), Gaps = 14/550 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T +  SLL  Y K  ++ ++ K+F+ +  R+ VSWN M+SGF+ NG +   +  F R L 
Sbjct: 199 TFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLG 258

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
               + + A F  +  A  +       + I+ + +  G +  + VG ALI  + KCG  +
Sbjct: 259 EEI-RPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVT 317

Query: 209 SGRKVFGEMRVRNV------ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
               VF    V N       + W A+ISG   +   EE + LF++M    I  +  TY S
Sbjct: 318 ESWSVF----VSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCS 373

Query: 263 SVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           ++ + + +++L   +Q+HG++WK  ++   LC  +ALMD Y+KCG ++   ++F+  EE 
Sbjct: 374 TLNSIADMRSLEYVKQLHGMIWKSGSIGVSLC--NALMDAYAKCGELDAMRKLFDTWEES 431

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           + +S T ++  ++Q+   E+A+ +F +M + G + +    S VL       SL  G+Q+H
Sbjct: 432 NQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVH 491

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           SL  K+ F  +  V + LI+MY+KCG + D+IKVF  +   + +SW +MI+ +A+HG   
Sbjct: 492 SLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAK 551

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            ALEL+ +M+L    P   TFL LL ACSH GLV++G+ +   M E + + P  EHYACV
Sbjct: 552 DALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACV 611

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VD++GR G L EA  FI +MP++PD  VW  LLGAC +HG+ ++ K AA+K+    PD  
Sbjct: 612 VDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDF 671

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
           A  +L++N Y  +G  +        MK   + KETG+SWI I  ++H F   D+ HPQ D
Sbjct: 672 AALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKD 731

Query: 622 TIHGVLAELL 631
            I+  L  L+
Sbjct: 732 DIYKTLNVLM 741



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 150/530 (28%), Positives = 260/530 (49%), Gaps = 21/530 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L+  SA E       S+H  F+  F+  +        + TV+ N L+  Y KC    +A 
Sbjct: 67  LIRESADERCLKKAKSIHG-FVIKFQLIEK-------SLTVMLNQLVIAYSKCSDFGSAR 118

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++FD++P +   SW  ++ G   NG +  G  +F   L       D+ + +  + AC   
Sbjct: 119 QVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVP-DEYALSAAIQACIGV 177

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           +  +V +M+H  V   G+     V  +L+  Y K G      KVF  +  RN ++W A+I
Sbjct: 178 DSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMI 237

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG V N LY E    F++M    I PN   ++S   A   L  + +GR I+ I +++ +Q
Sbjct: 238 SGFVSNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQ 297

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM--TVILVGFAQNGFEEEAMQLFV 347
           S++ + +AL+DM++KCG V ++W +F       GV++    ++ GF  +G  EEAM LF+
Sbjct: 298 SNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFL 357

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +M +  I+ D     + L       SL   KQ+H +I KS         N L++ Y+KCG
Sbjct: 358 RMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLC-NALMDAYAKCG 416

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           +L+   K+F      N +SW +++ A+++      AL ++ +M+  G +P  VTF  +L 
Sbjct: 417 ELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLA 476

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           +C+ +  +  G + + S+T     +      + ++DM  + G + +A    E +   PDV
Sbjct: 477 SCASLCSLEYGQQ-VHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLK-DPDV 534

Query: 528 LVWQALLGACSIHGDSEMGKYAAE---KLFLAQPDSPAPYILMANIYSCS 574
           + W A++   + HG   M K A E   K+ L  P+ P     +  +++CS
Sbjct: 535 ISWTAMISGYAQHG---MAKDALELFRKMELVLPN-PNSATFLCLLFACS 580



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 191/405 (47%), Gaps = 51/405 (12%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N L+ +Y KC    S R+VF E+  ++V +WT ++ G  +N  Y +G+  FV++    I 
Sbjct: 102 NQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIV 161

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+     +++ AC G+ ++  G  +H  +      S   + ++L+ MY+K G + D+ ++
Sbjct: 162 PDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKV 221

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM-----VSAVLGVFG 369
           F   E  + VS   ++ GF  NG   EA   F++M+  G EI PN+     VS  +G  G
Sbjct: 222 FNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRML--GEEIRPNVACFISVSKAIGQLG 279

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--W 427
               +  G+ I+ +  +    SN  V   LI+M++KCG + +S  VF        V+  W
Sbjct: 280 ---DVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPW 336

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           N+MI+ F   G+G +A+ L+  M    ++    T+ S L++ + +    + +E++K   +
Sbjct: 337 NAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADM----RSLEYVK---Q 389

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
           +H              M+ ++G +               V +  AL+ A +  G+ +   
Sbjct: 390 LH-------------GMIWKSGSI--------------GVSLCNALMDAYAKCGELD--- 419

Query: 548 YAAEKLFLAQPDS-PAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
            A  KLF    +S    +  +   YS S  W++      +M+EMG
Sbjct: 420 -AMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMG 463


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 311/545 (57%), Gaps = 22/545 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLEL 149
           + N+L++ Y + + + +A K+FD+MP RD VSW+ M++G+ + G+  +     F + +  
Sbjct: 208 VGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVRE 267

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D    T  LS C       + K IHCL    G+E   +VGN LI++Y KC     
Sbjct: 268 GV-KFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIED 326

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEG-LKLFVKMHLGLINPNSLTYLSSVMACS 268
            + VF  +  RNVI+WT +IS      LYEEG + LF KM L  + PN +T++  + A +
Sbjct: 327 AKAVFELINDRNVISWTTMIS------LYEEGAVSLFNKMRLDGVYPNDVTFIGLLHAIT 380

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               + +G  +HG+  K    S+L + ++L+ MY+K   ++DA ++F      + +S   
Sbjct: 381 IRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNA 440

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVF--GVDTSLGLGKQIHSLI 384
           ++ G+AQN   +EA++ F+  +   +E  PN  +  +VL     G D SL  G++ HS +
Sbjct: 441 LISGYAQNALCQEALEAFLYAI---MEYKPNEYTFGSVLNAISAGEDISLKHGQRCHSHL 497

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK     +P ++  L++MY+K G +++S +VF+  + ++  +W ++I+ +A+HG+    +
Sbjct: 498 IKVGLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQFAWTALISGYAQHGDYESVI 557

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+EEM+ E ++P  V FLS+L ACS   +V+ G +F   M + H I P  EHY+C+VDM
Sbjct: 558 KLFEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDM 617

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG L EA   + R+P  P V   Q+LLGAC  HG+ EM +  A  L   +P    PY
Sbjct: 618 LGRAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESGPY 677

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK------QVHSFVVDDKMHP 618
           +LM+N+Y+  G W++ AK  K M+E GV KE G SW+++         +H F   D  HP
Sbjct: 678 VLMSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDVGNFGASNLYLHGFSSGDVSHP 737

Query: 619 QADTI 623
           Q++ I
Sbjct: 738 QSEEI 742



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/434 (29%), Positives = 228/434 (52%), Gaps = 30/434 (6%)

Query: 111 LFDDMPMRDTVSWNTMVSGFL-RNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDR 168
           LFD  P  +  S+N ++  +L R+G F     FFK +   G     D+ +  + L AC  
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQ-SLRFFKNNFRWGLDGNADEFTLVLALKAC-- 85

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
                + + IH  V   G+   +TV N+L+  Y K G       VF  +   ++++W  +
Sbjct: 86  CGFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTI 145

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           +SG  ++   E  L   ++M+L  +  +S+TY +++  C   +    G Q+H +  K   
Sbjct: 146 LSGFEKS---ENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGF 202

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE-EAMQLFV 347
           + D+ + +AL+ MYS+   + DA ++F+     D VS + ++ G+AQ G    +A+ +FV
Sbjct: 203 KGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFV 262

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +MV+ G++ D   ++  L V G + +L LGKQIH L +K+   ++  V N LI+ YSKC 
Sbjct: 263 QMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCE 322

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            +ED+  VF  +  RN +SW +MI+ +        A+ L+ +M+L+GV P DVTF+ LLH
Sbjct: 323 IIEDAKAVFELINDRNVISWTTMISLYEE-----GAVSLFNKMRLDGVYPNDVTFIGLLH 377

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEA-RSFIER 520
           A +   +V +G+        VH +  +A+  +       ++ M  +   + +A R FIE 
Sbjct: 378 AITIRNMVEQGL-------MVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIE- 429

Query: 521 MPVKPDVLVWQALL 534
           +P + +++ W AL+
Sbjct: 430 LPYR-EIISWNALI 442



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 150/541 (27%), Positives = 264/541 (48%), Gaps = 58/541 (10%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + NSL++ Y K  Q+  A  +F ++   D VSWNT++SGF ++ E  + F      + L
Sbjct: 109 TVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEKS-ENALSFAL---RMNL 164

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + D  ++T  LS C   E  L    +H L   CG++ +V VGNAL+T Y +      
Sbjct: 165 NGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVD 224

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK---LFVKMHLGLINPNSLTYLSSVMA 266
            RKVF EM  R+ ++W+A+I+G  Q    + GL+   +FV+M    +  +++    ++  
Sbjct: 225 ARKVFDEMPSRDRVSWSAMITGYAQEG--DNGLQAILVFVQMVREGVKFDNVPITGALSV 282

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C   + L  G+QIH +  K   ++   + + L+  YSKC  +EDA  +FE   + + +S 
Sbjct: 283 CGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISW 342

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
           T ++     + +EE A+ LF KM   G+   PN V+   +L    +   +  G  +H L 
Sbjct: 343 TTMI-----SLYEEGAVSLFNKMRLDGVY--PNDVTFIGLLHAITIRNMVEQGLMVHGLC 395

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK+DF S   V N LI MY+K   ++D+ +VF  +  R  +SWN++I+ +A++    +AL
Sbjct: 396 IKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEAL 455

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACS-------------HVGLVNKGMEF---------- 481
           E +    +E  +P + TF S+L+A S             H  L+  G+            
Sbjct: 456 EAFLYAIME-YKPNEYTFGSVLNAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLD 514

Query: 482 ----LKSMTEVHRI---SPRAEHYACVVDMVGRAG-----LLIEARSFIERMPVKPDVLV 529
                 S+ E  R+   + +   +A    + G A       +I+    +E+  +KPD ++
Sbjct: 515 MYAKRGSIQESQRVFNETSKQSQFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVI 574

Query: 530 WQALLGACSIHGDSEMGKYAAE---KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           + ++L ACS +   +MG+       K  + +P+    Y  M ++   +GR +E  + + R
Sbjct: 575 FLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEH-YSCMVDMLGRAGRLEEAEEILAR 633

Query: 587 M 587
           +
Sbjct: 634 I 634


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/545 (35%), Positives = 303/545 (55%), Gaps = 1/545 (0%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   + NS+L+ Y KC ++ +A  LF+ M  RD +SWN++VSG+ + G        
Sbjct: 175 YGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQL 234

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
             R    G  + DQ +F  ++SA        V KM+H  +   G E++  +  +LI  Y 
Sbjct: 235 LIRMKTDGI-EPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYL 293

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG+ +S  ++F  M  ++VI+WTA+ISGLVQN   +  + +F +M    + P++ T  S
Sbjct: 294 KCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIAS 353

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+ L +   G  +HG + +  ++ D+  +++L+ MY+KCG +E +  +F+     D
Sbjct: 354 VLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRD 413

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   I+ G AQNG   +A+ LF +M KA    D   V ++L       +L  GK IH+
Sbjct: 414 IVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHN 473

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            + KS       ++  L++MYSKCGDL  + K F RM  ++ VSW+S+IA +  HG G  
Sbjct: 474 FVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGET 533

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL +Y +    G++P  V +LS+L ACSH GLV++G+ F  SMT+   I PR EH AC+V
Sbjct: 534 ALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIV 593

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++ RAG + EA SF +RM  KP + V   LL AC   G+ E+G   A ++ + +P +  
Sbjct: 594 DLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAG 653

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ +A+ Y+   RW    +   +MK + + K  G S+IE+   + +F  D   HPQ + 
Sbjct: 654 NYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEE 713

Query: 623 IHGVL 627
           I  VL
Sbjct: 714 IMLVL 718



 Score =  239 bits (609), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I  SL++FY K    ++A K+FD M  R+ V W TM+  + R GE D+ F  +     
Sbjct: 83  SYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR 142

Query: 149 LGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            G  Q    +   +LS      L LV  + +H  V   G+  +V + N+++  Y KCG  
Sbjct: 143 QGI-QPSSVTMLGLLSGV----LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRV 197

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              + +F  M  R+VI+W +++SG  Q     E L+L ++M    I P+  T+ S V A 
Sbjct: 198 EDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAA 257

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L  G+ +HG + +  L+ D  IE++L+ MY KCG+V  A++IFE     D +S T
Sbjct: 258 AMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWT 317

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G  QN   + A+ +F +M+K+ +      +++VL       S  LG  +H  I++ 
Sbjct: 318 AMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQ 377

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               +    N L+ MY+KCG LE S  VF RM+ R+ VSWN++++  A++G+  KAL L+
Sbjct: 378 RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLF 437

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+     P  +T +SLL AC+ +G +++G +++ +      + P       +VDM  +
Sbjct: 438 NEMRKARQRPDSITVVSLLQACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSK 496

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G L  A+   +RMP + D++ W +++     HG  E         FL     P   I +
Sbjct: 497 CGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSD-FLHTGIQPNHVIYL 554

Query: 568 ANIYSCS 574
           + + +CS
Sbjct: 555 SILSACS 561



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 192/393 (48%), Gaps = 17/393 (4%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +F  ++ AC   +L       H  V + GY  +  +  +LI  Y K G + S RKVF
Sbjct: 47  DAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVF 106

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  RNV+ WT +I    +   ++    ++  M    I P+S+T L  +   SG+  L 
Sbjct: 107 DTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELV 163

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             + +H  + +    SD+ + ++++++Y KCG VEDA  +FE  +  D +S   ++ G+A
Sbjct: 164 HLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q G   E +QL ++M   GIE D     +++    + + LG+GK +H  I+++    +  
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSH 283

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +   LI MY KCG++  + ++F  M  ++ +SW +MI+   ++     A+ ++  M    
Sbjct: 284 IETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR 343

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------RISPRAEHYACVVDMVGRA 508
           V P+  T  S+L AC+ +G    G       T VH      RI         +V M  + 
Sbjct: 344 VMPSTATIASVLAACAELGSFPLG-------TSVHGYILRQRIKLDIPSQNSLVTMYAKC 396

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G L ++ S  +RM  + D++ W A++   + +G
Sbjct: 397 GHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQNG 428



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 14/279 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ +   I+ +L+  A+ G F LG S+H   ++     D      +P+     NSL++ Y
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD------IPSQ----NSLVTMY 393

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  +  +FD M  RD VSWN +VSG  +NG        F   +     + D  + 
Sbjct: 394 AKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNE-MRKARQRPDSITV 452

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC         K IH  V        + +  AL+  Y KCG   S +K F  M  
Sbjct: 453 VSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQ 512

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           +++++W+++I+G   +   E  L+++   +H G I PN + YLS + ACS    + +G  
Sbjct: 513 QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTG-IQPNHVIYLSILSACSHNGLVDQGLS 571

Query: 279 -IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             H +     ++  L   + ++D+ S+ G VE+A+  ++
Sbjct: 572 FFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYK 610



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 132/247 (53%), Gaps = 3/247 (1%)

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           ++ A+I+ L     + + L  +  M      P++ T+ S V AC+ L     G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
                 SD  I ++L++ YSK G  + A ++F+  ++ + V  T ++  + + G  + A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            ++  M + GI+  P+ V+ +LG+      L   + +H+ +I+  F S+  + N ++N+Y
Sbjct: 135 SMYNIMRRQGIQ--PSSVT-MLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVY 191

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG +ED+  +F  M  R+ +SWNS+++ +A+ GN  + L+L   MK +G+EP   TF 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 464 SLLHACS 470
           SL+ A +
Sbjct: 252 SLVSAAA 258


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 297/559 (53%), Gaps = 3/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ ++++  Y K  ++ +A K+FD MP +DT+ WNTM+SG+ +N  +      F+  +  
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              +LD  +   IL A    +   +   IH L    G      V    I+ Y KCG    
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F E R  +++ + A+I G   N   E  L LF ++ L      S T L S++  SG
Sbjct: 275 ASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSST-LVSLVPVSG 333

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L     IHG   K    S   + +AL  +YSK   +E A ++F+ + E    S   +
Sbjct: 334 HLMLIYA--IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNG  E+A+ LF +M  +    +P  ++ +L       +L LGK +H L+  +DF
Sbjct: 392 ISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI MY+KCG + ++ ++F  M  +N V+WN+MI+ +  HG+G +AL ++ E
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSE 511

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G+ PT VTFL +L+ACSH GLV +G E   SM   +   P  +HYACVVD++GRAG
Sbjct: 512 MLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAG 571

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L  A  FIE MP++P   VW+ LLGAC IH D+ + +  +EKLF   PD+   ++L++N
Sbjct: 572 HLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           I+S    + + A   +  K+  + K  G + IEI +  H F   D+ HPQ   IH  L +
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEK 691

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M + GY P     LH
Sbjct: 692 LEGKMREAGYQPETELALH 710



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 219/472 (46%), Gaps = 15/472 (3%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +F  +   D   +N ++ GF  N         F    +    + + +++   +SA  
Sbjct: 71  ARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS 130

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                    +IH    + G + E+ +G+ ++  YFK       RKVF  M  ++ I W  
Sbjct: 131 GFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT 190

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINP-----NSLTYLSSVMACSGLQALCEGRQIHGI 282
           +ISG  +N++Y E +++F      LIN      ++ T L  + A + LQ L  G QIH +
Sbjct: 191 MISGYRKNEMYVESIQVFRD----LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K    S   + +  + +YSKCG ++ A  +F      D V+   ++ G+  NG  E +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELS 306

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +++ +G ++  + + +++ V G    L L   IH   +KS+F S+  V+  L  +
Sbjct: 307 LSLFKELMLSGAKLKSSTLVSLVPVSG---HLMLIYAIHGYSLKSNFLSHTSVSTALTTV 363

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSK  ++E + K+F     ++  SWN+MI+ + ++G    A+ L+ EM+     P  VT 
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTI 423

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
             +L AC+ +G ++ G +++  +               ++ M  + G + EAR   + MP
Sbjct: 424 TCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP 482

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
            K +V  W  ++    +HG  +       ++ L    +P P   +  +Y+CS
Sbjct: 483 KKNEV-TWNTMISGYGLHGHGQEALTIFSEM-LNSGIAPTPVTFLCVLYACS 532



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 12/286 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S L+S+    GH  L  ++H   +K+          N  + T +  +L + Y K +++ +
Sbjct: 323 STLVSLVPVSGHLMLIYAIHGYSLKS----------NFLSHTSVSTALTTVYSKLNEIES 372

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A KLFD+ P +   SWN M+SG+ +NG  +     F R ++   +  +  + T ILSAC 
Sbjct: 373 ARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLF-REMQNSEFSPNPVTITCILSACA 431

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           +     + K +H LV    +E  + V  ALI  Y KCGS +  R++F  M  +N +TW  
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNT 491

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKL 286
           +ISG   +   +E L +F +M    I P  +T+L  + ACS    + EG +I + ++ + 
Sbjct: 492 MISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             +  +   + ++D+  + G ++ A Q  E      G S+   L+G
Sbjct: 552 GFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLG 597



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 145/299 (48%), Gaps = 2/299 (0%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  + L G+  ++++   L       G+    R +F  ++  +V  +  ++ G   N+  
Sbjct: 40  HAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 239 EEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
              L +F  +     + PNS TY  ++ A SG +    G  IHG        S+L + S 
Sbjct: 100 HSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSN 159

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEI 356
           ++ MY K   VEDA ++F+   E D +    ++ G+ +N    E++Q+F  ++ ++   +
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D   +  +L        L LG QIHSL  K+   S+ +V  G I++YSKCG ++ +  +F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLF 279

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
                 + V++N+MI  +  +G    +L L++E+ L G +    T +SL+    H+ L+
Sbjct: 280 REFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI 338


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 296/503 (58%), Gaps = 5/503 (0%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G  + ++  ++ +L+ C         + IH  +    +E+++ + N ++  Y KCGS
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVM 265
               + +F +M  +++++WT +ISG  Q+    E L LF KM HLG   PN  T LSS++
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFT-LSSLL 213

Query: 266 ACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             SG   +   GRQ+H    K     ++ + S+L+DMY++   + +A  IF      + V
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G A+ G  E  M+LF++M++ G E      S+V        SL  GK +H+ +
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV 333

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IKS      ++ N LI+MY+K G ++D+ KVF R+  ++ VSWNS+I+ +A+HG G +AL
Sbjct: 334 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 393

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+E+M    V+P ++TFLS+L ACSH GL+++G  + + M + H+I  +  H+  VVD+
Sbjct: 394 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDL 452

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG L EA  FIE MP+KP   VW ALLG+C +H + ++G YAAE++F   P    P+
Sbjct: 453 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPH 512

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+ +GR  + AK  K MKE GV KE   SW+EIE +VH FV +D  HP  + I 
Sbjct: 513 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 572

Query: 625 GVLAELLRLMIDEGYVPNKRFIL 647
            +  ++   + + GYVP+   +L
Sbjct: 573 RMWEKISGKIKEIGYVPDTSHVL 595



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 189/374 (50%), Gaps = 10/374 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N +L+ Y KC  +  A  LFD MP +D VSW  ++SG+ ++G+       F + L L
Sbjct: 141 VLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHL 200

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF Q ++ + + +L A          + +H      GY+  V VG++L+  Y +      
Sbjct: 201 GF-QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMRE 259

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + +F  +  +NV++W A+I+G  +    E  ++LF++M      P   TY S   AC+ 
Sbjct: 260 AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACAS 319

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             +L +G+ +H  + K   Q    I + L+DMY+K GS++DA ++F    + D VS   I
Sbjct: 320 SGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSI 379

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK 386
           + G+AQ+G   EA+QLF +M+KA  ++ PN ++  L V    +  GL   G+    L+ K
Sbjct: 380 ISGYAQHGLGAEALQLFEQMLKA--KVQPNEIT-FLSVLTACSHSGLLDEGQYYFELMKK 436

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALE 445
               +    +  ++++  + G L ++ K    M  + + + W +++ +   H N    L 
Sbjct: 437 HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKN--MDLG 494

Query: 446 LYEEMKLEGVEPTD 459
           +Y   ++  ++P D
Sbjct: 495 VYAAEQIFELDPHD 508


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 200/593 (33%), Positives = 310/593 (52%), Gaps = 44/593 (7%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+   L       A +LFD++P  D  + +T++S    +G  +     +    E G  + 
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KP 162

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D   F     AC  S  +L  K +H     CG   +V VGNALI +Y KC      R+VF
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            ++ VR+V++WT++ S  V+     +G+ +F +M    + PN +T  S + AC+ L+ L 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV--- 331
            G++IHG   +  +  +L + SAL+ +Y+KC SV +A  +F+     D VS   +L    
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 332 --------------------------------GFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
                                           G  +NG  EEA+++F KM K G + +  
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 402

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIK----SDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            +S++L       +L +GK+IH  + +     D TS       L+ MY+KCGDL  S  V
Sbjct: 403 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTST----TALLYMYAKCGDLNLSRNV 458

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  ++ V+WN+MI A A HGNG +AL L+++M L  V+P  VTF  +L  CSH  LV
Sbjct: 459 FDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLV 518

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +G++   SM   H + P A HY+CVVD+  RAG L EA  FI+ MP++P    W ALL 
Sbjct: 519 EEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLA 578

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC ++ + E+ K +A+KLF  +P++P  Y+ + NI   +  W E ++    MKE G+ K 
Sbjct: 579 ACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKT 638

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G SW+++  +VH+FVV DK + ++D I+  L EL+  M   GY P+  ++L 
Sbjct: 639 PGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQ 691


>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 713

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 188/484 (38%), Positives = 277/484 (57%), Gaps = 2/484 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           FT +LS+   +    + + IH +    G    V + NAL+T Y KC S +   K+F    
Sbjct: 213 FTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSG 272

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RN ITW+A+++G  QN    E +KLF +M    I P+  T +  + ACS +  L EG+Q
Sbjct: 273 DRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQ 332

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H  L KL  +  L   +AL+DMY+K G + DA + F+  +E D    T ++ G+ QN  
Sbjct: 333 LHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSD 392

Query: 339 EEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
            EEA+ L+ +M  AGI   DP M S VL       +L LGKQ+H   IK  F     + +
Sbjct: 393 NEEALILYRRMKTAGIIPNDPTMAS-VLKACSSLATLELGKQVHGHTIKHGFGLEVPIGS 451

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L  MY+KCG LED   VF R   ++ VSWN+MI+  + +G G +ALEL+EEM  EG EP
Sbjct: 452 ALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGTEP 511

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            DVTF++++ ACSH G V +G  +   M++   + P+ +HYAC+VD++ RAG L E + F
Sbjct: 512 DDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYACMVDVLSRAGQLKETKEF 571

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           IE   +   + +W+ LL AC  HG+ E+G YA EKL        + Y+ +A IY+  GR 
Sbjct: 572 IESASIDHGLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRESSTYVQLAGIYTALGRM 631

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           ++  +  K M+  GV KE G SWI ++ Q H FVV D MHP+ +    +++ + R M++E
Sbjct: 632 RDVERVWKLMRTNGVSKEVGCSWIALKNQWHVFVVGDTMHPRIEETKDLVSLVSRQMLEE 691

Query: 638 GYVP 641
           G+V 
Sbjct: 692 GFVT 695



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 146/557 (26%), Positives = 256/557 (45%), Gaps = 36/557 (6%)

Query: 22  SPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQN 81
           S F T+I  +P S TS L+        + L+  ++  +   G ++HA  I+T      Q+
Sbjct: 4   STFQTEI--NPFSHTSTLL--------KALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQH 53

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
                      N L++FY KC Q+  A  +F+ +  +D VSWN++++G+ +NG       
Sbjct: 54  A----------NVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSHT 103

Query: 142 FFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
             +   E+    +   ++T+  I  A    +   V +  H LV       ++ V  +L+ 
Sbjct: 104 VMQLFREMRAQDILPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVG 163

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y K G        +G         W      +++ QL +  +    +      +    T
Sbjct: 164 MYCKAGLKYLYMVYYG--------FWLCYKKDVLRRQL-KSSICFLEEKEKESDSDYVFT 214

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
            + S +A +    L  GRQIHGI  K  L   + + +AL+ MYSKC S+ +A ++F+ + 
Sbjct: 215 AVLSSLAATVYVGL--GRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSG 272

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           + + ++ + ++ G++QNG   EA++LF +M  AGI+     +  VL        L  GKQ
Sbjct: 273 DRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQ 332

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +HS ++K  F  + F    L++MY+K G L D+ K F  +  R+   W S+I+ + ++ +
Sbjct: 333 LHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSD 392

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +AL LY  MK  G+ P D T  S+L ACS +  +  G + +   T  H         +
Sbjct: 393 NEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQ-VHGHTIKHGFGLEVPIGS 451

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            +  M  + G L +      R P K DV+ W A++   S +G  +      E++ LA+  
Sbjct: 452 ALSTMYTKCGSLEDGNLVFRRTPNK-DVVSWNAMISGLSHNGQGDEALELFEEM-LAEGT 509

Query: 560 SPAPYILMANIYSCSGR 576
            P     +  I +CS +
Sbjct: 510 EPDDVTFVNIISACSHK 526



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/356 (30%), Positives = 182/356 (51%), Gaps = 17/356 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y KC+ +  A K+FD    R++++W+ MV+G+ +NGE       F R    G  
Sbjct: 249 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAIKLFSRMFSAG-- 306

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +  + +TI  +L+AC      +  K +H  +   G+E  +    AL+  Y K G  +  
Sbjct: 307 -IKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADA 365

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RK F  ++ R+V  WT++ISG VQN   EE L L+ +M    I PN  T  S + ACS L
Sbjct: 366 RKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSL 425

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+Q+HG   K     ++ I SAL  MY+KCGS+ED   +F      D VS   ++
Sbjct: 426 ATLELGKQVHGHTIKHGFGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMI 485

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            G + NG  +EA++LF +M+  G E D     N++SA      V+         H  ++ 
Sbjct: 486 SGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSY---FH--MMS 540

Query: 387 SDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
             F  +P V++   ++++ S+ G L+++ +     +  + +  W  +++A   HGN
Sbjct: 541 DQFGLDPKVDHYACMVDVLSRAGQLKETKEFIESASIDHGLCLWRILLSACKNHGN 596


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 311/559 (55%), Gaps = 3/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + NSL++ Y K  ++  A  +F++M  RD +SWN++++G  ++         F + L  
Sbjct: 358 TVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRC 417

Query: 150 GFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           G  + D  + T +L A       L +SK IH          +  V  ALI +Y +     
Sbjct: 418 GL-KPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMK 476

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               +FG     +++ W A++SG  Q+    + L+LF  MH      +  T  + +  C 
Sbjct: 477 EAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCG 535

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A+ +G+Q+H    K     DL + S ++DMY KCG +  A   F+     D V+ T 
Sbjct: 536 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 595

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G  +NG EE A+ +F +M   G+  D   ++ +       T+L  G+QIH+  +K +
Sbjct: 596 LISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            TS+PFV   L++MY+KCG ++D+  +F R+   N  +WN+M+   A+HG G +AL+L++
Sbjct: 656 CTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFK 715

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P  VTF+ +L ACSH GLV++  ++++SM   + I P  EHY+C+ D +GRA
Sbjct: 716 QMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRA 775

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           GL+ EA + I+ M ++    +++ LL AC + GD+E GK  A KL   +P   + Y+L++
Sbjct: 776 GLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 835

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ + +W E   A   MK   V K+ G SWIE++ ++H FVVDD+ +PQ + I+  + 
Sbjct: 836 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVK 895

Query: 629 ELLRLMIDEGYVPNKRFIL 647
           +++R +  EGYVP   F L
Sbjct: 896 DMIRDIKQEGYVPETDFTL 914



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 197/455 (43%), Gaps = 56/455 (12%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE-----FDMGFGFFKRSL 147
           N+L+S Y KC  +  A ++FD MP RD VSWN++++ + ++ E         F  F R L
Sbjct: 85  NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLF-RIL 143

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                   + + + +L  C  S     S+  H      G + +  V  AL+  Y K G  
Sbjct: 144 RQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKV 203

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             GR +F EM  R+V+ W  ++   ++    EE + L    H   ++PN +T        
Sbjct: 204 KEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEIT-------- 255

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                             L L S +  +       S+ G V+     FE   +   VS  
Sbjct: 256 ------------------LRLLSRISGDD------SEAGQVKS----FENGNDASAVSEI 287

Query: 328 V----ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +    IL G+   G     ++ F+ MV++ +E D      VL       SL LG+Q+H +
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            +K        V+N LINMY K   +  +  VF+ M+ R+ +SWNS+IA  A+     +A
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEHY--A 499
           + L+ ++   G++P   T  S+L A S +    +G+   K +  VH I     A+ +   
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAASSLP---EGLSLSKQI-HVHAIKTNNVADSFVST 463

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            ++D   R   + EA     R     D++ W A++
Sbjct: 464 ALIDAYSRNRCMKEAEVLFGRNNF--DLVAWNAMM 496



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 33/183 (18%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           + L LGK  H+ I+  +     F+ N LI+MYSKCG L  + +VF +M  R+ VSWNS++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 432 AAFARHGNGF-----KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           AA+A+   G      +A  L+  ++ + V  + +T   +L  C H G V     F     
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESF----- 174

Query: 487 EVHRISPRAEHYACVVDMVGR---AGLLI----------EARSFIERMPVKPDVLVWQAL 533
                      YAC + + G    AG L+          E R   E MP + DV++W  +
Sbjct: 175 ---------HGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLM 224

Query: 534 LGA 536
           L A
Sbjct: 225 LKA 227



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 19/272 (6%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F  +  A   S+L ++ K  H  +       E  + N LI+ Y KCGS +  R+VF +M 
Sbjct: 50  FGFLRDAISTSDL-MLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMP 108

Query: 219 VRNVITWTAVIS-------GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            R++++W ++++       G+V+N   +E   LF  +   ++  + +T    +  C    
Sbjct: 109 ERDLVSWNSILAAYAQSSEGVVEN--VKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +C     HG   K+ L  D  +  AL+++Y K G V++   +FE     D V   ++L 
Sbjct: 167 YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL--GVFGVDTSLGLGKQIHSLIIKSDF 389
            + + GF+EEA+ L      +G+   PN ++  L   + G D+  G   Q+ S    +D 
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLH--PNEITLRLLSRISGDDSEAG---QVKSFENGNDA 281

Query: 390 T--SNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           +  S     N +++ Y   G     +K F  M
Sbjct: 282 SAVSEIISRNKILSGYLHAGQYSALLKCFMDM 313



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 17/135 (12%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TFEPFDNQNVYNVPNATVIWNSLL 96
           VL +   I+ L   S+       G  +HA+ +K   T +PF             +  SL+
Sbjct: 621 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPF-------------VGTSLV 667

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y KC  + +A  LF  + M +  +WN M+ G  ++GE       FK+   LG  + D+
Sbjct: 668 DMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGI-KPDK 726

Query: 157 ASFTIILSACDRSEL 171
            +F  +LSAC  S L
Sbjct: 727 VTFIGVLSACSHSGL 741


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 292/506 (57%), Gaps = 4/506 (0%)

Query: 147 LELGFYQLDQ--ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           LE+G   L+     +  +L+ C         + +H  +    YE  V +   LI  Y KC
Sbjct: 466 LEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC 525

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                 R+V  EM  RNV++WTA+ISG  Q     E L LFV+M +    PN  T+ + +
Sbjct: 526 RCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVL 585

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            +C+       GRQIH ++ K + +S + + S+L+DMY+K G + +A ++F+   E D V
Sbjct: 586 TSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVV 645

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T I+ G+AQ G +EEA+ LF ++ + G+  +    ++VL       +L  G+Q+HS +
Sbjct: 646 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 705

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +++       + N LI+MYSKCG L  S ++F  M  R  +SWN+M+  +++HG G +A+
Sbjct: 706 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAV 765

Query: 445 ELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGME-FLKSMTEVHRISPRAEHYACVV 502
           EL++ MK E  V+P  VTFL++L  CSH G+ ++G+E F + + +     P  EHY CVV
Sbjct: 766 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 825

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D+ GRAG + EA  FI++MP +P   +W +LLGAC +H +  +G++ A +L   + ++  
Sbjct: 826 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 885

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y++++N+Y+ +GRW +     + MKE  V KE G SWIE+++ +H+F   D+ HP+ + 
Sbjct: 886 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 945

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           +   + EL   + + GYVP    +L+
Sbjct: 946 VFAKVRELSIKIKEAGYVPELSCVLY 971



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 197/383 (51%), Gaps = 19/383 (4%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +HA  IKT +EP              +   L+  Y KC  + +A ++ D+MP R+ V
Sbjct: 496 GQRVHAHMIKTCYEP-----------PVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVV 544

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  M+SG+ + G        F   L  G    ++ +F  +L++C  S    + + IH L
Sbjct: 545 SWTAMISGYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCTSSSGFQLGRQIHSL 603

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V    +E  + VG++L+  Y K G     R+VF  +  R+V++ TA+ISG  Q  L EE 
Sbjct: 604 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 663

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF ++    +  N +TY S + A SGL AL  GRQ+H  + +  L   + ++++L+DM
Sbjct: 664 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 723

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           YSKCGS+  + +IF+   E   +S   +LVG++++G   EA++LF K++K   ++ P+ V
Sbjct: 724 YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF-KLMKEENKVKPDSV 782

Query: 362 S--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFS 417
           +  AVL           G +I   ++       P + +   +++++ + G +E++ +   
Sbjct: 783 TFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 842

Query: 418 RMAPRNSVS-WNSMIAAFARHGN 439
           +M    + + W S++ A   H N
Sbjct: 843 KMPFEPTAAIWGSLLGACRVHQN 865



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 102/195 (52%), Gaps = 10/195 (5%)

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +  ++M   G+E++     +VL      T++  G+++H+ +IK+ +    ++   LI +Y
Sbjct: 463 EALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLY 522

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KC  L D+ +V   M  RN VSW +MI+ +++ G   +AL L+ EM + G  P + TF 
Sbjct: 523 NKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFA 582

Query: 464 SLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           ++L +C+       G +     +K+  E H         + ++DM  +AG + EAR   +
Sbjct: 583 TVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVG-----SSLLDMYAKAGKICEARRVFD 637

Query: 520 RMPVKPDVLVWQALL 534
            +P + DV+   A++
Sbjct: 638 GLPER-DVVSCTAII 651



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NYV  + +L+  +       G  +H+  ++   PF            V+ NSL+  Y KC
Sbjct: 678 NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF----------YVVLQNSLIDMYSKC 727

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  + ++FD MP R  +SWN M+ G+ ++G        FK   E    + D  +F  +
Sbjct: 728 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAV 787

Query: 163 LSAC 166
           LS C
Sbjct: 788 LSGC 791


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 193/586 (32%), Positives = 310/586 (52%), Gaps = 11/586 (1%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           D YV +S  L    +  +   G SLHA   KTF          + ++  + ++LL  Y++
Sbjct: 95  DTYV-LSVALKACGQSSNIAYGESLHAYAEKTF----------LLSSVFVGSALLDMYMR 143

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             ++  + ++F +MP R++V+W   ++G +  G    G  +F +         D  +F I
Sbjct: 144 IGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAI 203

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
            L AC         + IH  V + G+   + V N+L T Y +CG    G ++F  M  R+
Sbjct: 204 ALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERD 263

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+ WT++I+  ++    E+ +  F+ M    ++PN  T+ S+  AC+ L  L  G Q+HG
Sbjct: 264 VVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHG 323

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            ++ L L   L + +++M MYS C  ++ A  +F+     D +S + I+ G++Q  F EE
Sbjct: 324 NVFSLGLGDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEE 383

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
             + F  M +AG +     ++++L V G+   L  G+Q+H+L +      NP + + LIN
Sbjct: 384 CFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALIN 443

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG + ++ KVF      + VS  +MI  +A HG   +A++L+E+       P DVT
Sbjct: 444 MYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVT 503

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+S+L ACSH G ++ G ++   M E + + P  EHY C+VD++ RAG L +A   I  M
Sbjct: 504 FISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEM 563

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P K D +VW  LL AC   GD E G+ AA+++    P S    + +ANI+S +G WKE A
Sbjct: 564 PWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAA 623

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
              K MK  GV KE G S I I+ QV +F      HPQ++ +  +L
Sbjct: 624 NVRKDMKSKGVIKEPGWSSILIKDQVSAFASGSLSHPQSEDVCSIL 669



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 219/455 (48%), Gaps = 6/455 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELG 150
           +S L   +   ++R A ++FD MP RD  SW  ++ G++   + +     F   R   LG
Sbjct: 32  HSQLQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLG 91

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D    ++ L AC +S      + +H           V VG+AL+  Y + G     
Sbjct: 92  VSG-DTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKS 150

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSG 269
            +VF EM  RN +TWTA I+GLV   L+ EGL+ F +M     ++ ++  +  ++ AC+ 
Sbjct: 151 CRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACAD 210

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ +  GR+IH  +      + L + ++L  MY++CG ++D  ++FE   E D V  T +
Sbjct: 211 LRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSL 270

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  + + G EE+A+  F+ M  + +  +    ++        + L  G+Q+H  +     
Sbjct: 271 ITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGL 330

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  V+N ++ MYS C  L+ +  +F  M  R+ +SW+++I  +++   G +  + +  
Sbjct: 331 GDSLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSW 390

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G +PTD    SLL     + ++ +G + + ++     +       + +++M  + G
Sbjct: 391 MRQAGPQPTDFALASLLSVSGIMAVLEQGRQ-VHALALYLGLEQNPTIRSALINMYSKCG 449

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            +IEA    E    + D++   A++   + HG  E
Sbjct: 450 SIIEASKVFEEKD-RTDIVSLTAMINGYAEHGKCE 483


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 195/590 (33%), Positives = 322/590 (54%), Gaps = 14/590 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LH   IK+   +D+          +  N+L+S Y K  Q+ +A  +F  +  
Sbjct: 195 GDIDLGGQLHGHVIKS--GYDHH--------LIAQNALISMYTKFGQIAHASDVFTMIST 244

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           +D +SW +M++GF + G        F+     G YQ ++  F  + SAC         + 
Sbjct: 245 KDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQ 304

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           I  +    G    V  G +L   Y K G   S ++ F ++   ++++W A+I+ L  + +
Sbjct: 305 IQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSDV 364

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E +  F +M H+GL+ P+ +T+L+ + AC     L +G QIH  + K+ L     + +
Sbjct: 365 -NEAIYFFCQMIHMGLM-PDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCN 422

Query: 297 ALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +L+ MY+KC ++ DA+ +F + +E  + VS   IL   +Q+    EA +LF  M+ +  +
Sbjct: 423 SLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENK 482

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   ++ +LG      SL +G Q+H   +KS    +  V+N LI+MY+KCG L+ +  V
Sbjct: 483 PDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYV 542

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F      + VSW+S+I  +A+ G G +AL L+  M+  GV+P +VT+L +L ACSH+GLV
Sbjct: 543 FDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLV 602

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +G     +M     I P  EH +C+VD++ RAG L EA +FI++    PD+ +W+ LL 
Sbjct: 603 EEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLA 662

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           +C  HG+ ++ + AAE +    P + A  +L++NI++ +G WKE A+    MK+MGV K 
Sbjct: 663 SCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKV 722

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRF 645
            G SWIE++ Q+H F  +D  HPQ   I+ +L +L   M+D+GY P +R 
Sbjct: 723 PGQSWIEVKDQIHVFFSEDSSHPQRGNIYTMLEDLWLQMLDDGYDPCQRL 772



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 138/453 (30%), Positives = 221/453 (48%), Gaps = 18/453 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N +L+ Y KC  +++A K FD M +R  VSW  M+SG+ +NG+ +     + + L  
Sbjct: 116 VLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRS 175

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G++  DQ +F  I+ AC  +    +   +H  V   GY+  +   NALI+ Y K G  + 
Sbjct: 176 GYFP-DQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAH 234

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
              VF  +  +++I+W ++I+G  Q     E L LF  M   G+  PN   + S   AC 
Sbjct: 235 ASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACR 294

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L     GRQI G+  K  L  ++    +L DMY+K G +  A + F   E  D VS   
Sbjct: 295 SLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNA 354

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+   A N    EA+  F +M+  G+  D      +L   G   +L  G QIHS IIK  
Sbjct: 355 IIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMG 413

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELY 447
                 V N L+ MY+KC +L D+  VF  ++   N VSWN++++A ++H    +A  L+
Sbjct: 414 LDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLF 473

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------ 501
           + M     +P ++T  ++L  C+ +  +  G        +VH  S ++     V      
Sbjct: 474 KLMLFSENKPDNITITTILGTCAELVSLEVG-------NQVHCFSVKSGLVVDVSVSNRL 526

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +DM  + GLL  AR ++      PD++ W +L+
Sbjct: 527 IDMYAKCGLLKHAR-YVFDSTQNPDIVSWSSLI 558



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 208/424 (49%), Gaps = 9/424 (2%)

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +S N+ ++   +   +      F   L+    QL+ +++  ++ AC         K IH 
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHD 104

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
            +     + ++ + N ++  Y KCGS    RK F  M++R+V++WT +ISG  QN    +
Sbjct: 105 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQEND 164

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            + ++++M      P+ LT+ S + AC     +  G Q+HG + K      L  ++AL+ 
Sbjct: 165 AIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALIS 224

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+K G +  A  +F      D +S   ++ GF Q G+E EA+ LF  M + G+   PN 
Sbjct: 225 MYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGV-YQPN- 282

Query: 361 VSAVLG-VFGVDTSL---GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
              + G VF    SL     G+QI  +  K     N F    L +MY+K G L  + + F
Sbjct: 283 -EFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAF 341

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
            ++   + VSWN++IAA A + +  +A+  + +M   G+ P D+TFL+LL AC     +N
Sbjct: 342 YQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLN 400

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +GM+    + ++  +   A     ++ M  +   L +A +  + +    +++ W A+L A
Sbjct: 401 QGMQIHSYIIKM-GLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSA 459

Query: 537 CSIH 540
           CS H
Sbjct: 460 CSQH 463


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 199/610 (32%), Positives = 323/610 (52%), Gaps = 14/610 (2%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           + LV D +     ++   A  G   LG  LHA  IK              +  +  N+L+
Sbjct: 159 ADLVPDQFA-FGSIIKACACAGDVVLGKQLHAQVIK----------LESSSHLIAQNALI 207

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFYQLD 155
           + Y++ +QM +A K+F  +P +D +SW+++++GF + G EF+      K  L  G +  +
Sbjct: 208 AMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFE-ALSHLKEMLSFGVFHPN 266

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           +  F   L AC           IH L            G +L   Y +CG   S R+VF 
Sbjct: 267 EYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFN 326

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           ++   +  +W  +I+GL  N   +E + +F +M      P++++  S + A +   ALC+
Sbjct: 327 QIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQ 386

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFA 334
           G QIH  + K    +DL + ++L+ MY+ C  +   + +FE F  + D VS   IL    
Sbjct: 387 GMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACL 446

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q+    E ++LF  M+ +  E D   +  +L      +SL LG Q+H    K+      F
Sbjct: 447 QHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQF 506

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + NGLI+MY+KCG L  + ++F  M   + VSW+++I  +A+ G G +AL L+ EMK  G
Sbjct: 507 IKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSG 566

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           +EP  VTF+ +L ACSHVGLV +G++    M   H ISP  EH +CVVD++ RAG L EA
Sbjct: 567 IEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEA 626

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             FI+ M ++PDV+VW+ LL AC   G+ ++ + AAE +    P +   ++L+ ++++ S
Sbjct: 627 ERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASS 686

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
           G W++ A     MK+  V K  G SWI++E ++H F  +D +HP+ D I+ VL  +   M
Sbjct: 687 GNWEDAALLRSSMKKHDVKKIPGQSWIDVEDKIHIFFAEDVLHPERDDIYTVLHNIWSQM 746

Query: 635 IDEGYVPNKR 644
           +DE    +K+
Sbjct: 747 LDECNPQHKK 756



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 230/459 (50%), Gaps = 17/459 (3%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           N    T++ N +LS Y KC  +R+A ++FD MP R+ VS+ ++++G+ +NG+       +
Sbjct: 94  NCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEAITLY 153

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            + L+      DQ +F  I+ AC  +   ++ K +H  V        +   NALI  Y +
Sbjct: 154 LKMLQADLVP-DQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVR 212

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLS 262
               S   KVF  +  +++I+W+++I+G  Q     E L    +M   G+ +PN   + S
Sbjct: 213 FNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGS 272

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           S+ ACS L     G QIHG+  KL L  +     +L DMY++CG ++ A ++F   E  D
Sbjct: 273 SLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQIERPD 332

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             S  VI+ G A NG+ +EA+ +F +M  +G   D   + ++L       +L  G QIHS
Sbjct: 333 TASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHS 392

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGF 441
            IIK  F ++  V N L+ MY+ C DL     +F     + +SVSWN+++ A  +H    
Sbjct: 393 FIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPV 452

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EH 497
           + L L++ M +   EP  +T  +LL  C  +  +  G       ++VH  S +     E 
Sbjct: 453 EMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLG-------SQVHCYSWKTGLVLEQ 505

Query: 498 YA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +    ++DM  + G L +AR   + M    DV+ W  L+
Sbjct: 506 FIKNGLIDMYAKCGSLRQARRIFDSMD-NGDVVSWSTLI 543



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/428 (27%), Positives = 205/428 (47%), Gaps = 22/428 (5%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI-------ILSACDRSELSLVSK 176
           N  ++   RN        F++ +LE   +    +SF I       ++ AC  S      +
Sbjct: 32  NDHINSLCRNS-------FYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGR 84

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  +     + +  + N +++ Y KCGS    R+VF  M  RN++++T+VI+G  QN 
Sbjct: 85  KIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNG 144

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              E + L++KM    + P+   + S + AC+    +  G+Q+H  + KL   S L  ++
Sbjct: 145 QEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQN 204

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+ MY +   + DA ++F      D +S + I+ GF+Q GFE EA+    +M+  G+  
Sbjct: 205 ALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGV-F 263

Query: 357 DPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            PN  +  + L           G QIH L IK + T N      L +MY++CG L+ + +
Sbjct: 264 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARR 323

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VF+++   ++ SWN +IA  A +G   +A+ ++ EM+  G  P  ++  SLL A +    
Sbjct: 324 VFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMA 383

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           + +GM+    + +   +   A+   C  ++ M      L    +  E    K D + W A
Sbjct: 384 LCQGMQIHSFIIKCGFL---ADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNA 440

Query: 533 LLGACSIH 540
           +L AC  H
Sbjct: 441 ILTACLQH 448



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 167/320 (52%), Gaps = 14/320 (4%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNS------LTYLSSVMACSGLQALCEGRQIHGI 282
           I+ L +N  Y E L+ F          NS       TY+S + ACS  ++L +GR+IH  
Sbjct: 35  INSLCRNSFYREALEAF-----DFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDH 89

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           +     + D  + + ++ MY KCGS+ DA ++F+F  E + VS T ++ G++QNG E EA
Sbjct: 90  ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEA 149

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + L++KM++A +  D     +++        + LGKQ+H+ +IK + +S+    N LI M
Sbjct: 150 ITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAM 209

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTDVT 461
           Y +   + D+ KVF  +  ++ +SW+S+IA F++ G  F+AL   +EM   GV  P +  
Sbjct: 210 YVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYI 269

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F S L ACS +   + G + +  +     ++  A     + DM  R G L  AR    ++
Sbjct: 270 FGSSLKACSSLLRPDYGSQ-IHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVFNQI 328

Query: 522 PVKPDVLVWQALLGACSIHG 541
             +PD   W  ++   + +G
Sbjct: 329 E-RPDTASWNVIIAGLANNG 347


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 311/558 (55%), Gaps = 16/558 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M +A ++FD+M  R+ V+W T++ GF++N +       F+  L  G Y  
Sbjct: 108 LVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYP- 166

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
              + + +L AC   +   +    H  +     + + +VG+AL + Y KCG      K F
Sbjct: 167 SVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTF 226

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +R +NVI+WT+ +S    N    +GL+LFV+M    I PN  T  S++  C  + +L 
Sbjct: 227 SRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLE 286

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q++ +  K   +S+L + ++L+ +Y K G + +A ++F   ++   V+   ++ G A
Sbjct: 287 LGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHA 346

Query: 335 Q-------------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           Q              G   EA++LF K+  +G++ D   +S+VL V     ++  G+QIH
Sbjct: 347 QMMELTKDNLSACHRG--SEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIH 404

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           +  IK+ F S+  V+  LI+MYSKCG +E + K F  M+ R  ++W SMI  F++HG   
Sbjct: 405 AQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQ 464

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL ++E+M L GV P  VTF+ +L ACSH G+V++ + + + M + ++I P  +HY C+
Sbjct: 465 QALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECM 524

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VDM  R G L +A +FI++M  +P   +W   +  C  HG+ E+G YAAE+L   +P  P
Sbjct: 525 VDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDP 584

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+L+ N+Y  + R+++ ++  K M+E  V K    SWI I+ +V+SF  + K HPQ+ 
Sbjct: 585 ETYVLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSS 644

Query: 622 TIHGVLAELLRLMIDEGY 639
            I   L +LL  + + GY
Sbjct: 645 LICKSLEDLLAKVKNVGY 662



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 201/409 (49%), Gaps = 13/409 (3%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +  +L  C  +     ++++H  V   G  +   V + L+  Y KCG+    R+VF  M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV+ WT ++ G VQN   +  + +F +M      P+  T  + + ACS LQ+L  G Q
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
            H  + K  +  D  + SAL  +YSKCG +EDA + F    E + +S T  +   A NG 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
             + ++LFV+M+   I+ +   +++ L       SL LG Q++SL IK  + SN  V N 
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-----------GNGFKALELY 447
           L+ +Y K G + ++ ++F+RM   + V+WN+MIA  A+              G +AL+L+
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLF 369

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            ++ L G++P   T  S+L  CS +  + +G +      +   +S      + ++ M  +
Sbjct: 370 SKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTS-LISMYSK 428

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
            G +  A      M  +  ++ W +++   S HG S+   +  E + LA
Sbjct: 429 CGSIERASKAFLEMSTRT-MIAWTSMITGFSQHGMSQQALHIFEDMSLA 476



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 199/417 (47%), Gaps = 38/417 (9%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   HA  IK    FD            + ++L S Y KC ++ +A+K F  +  ++ +
Sbjct: 186 LGDQFHAYIIKYHVDFD----------ASVGSALCSLYSKCGRLEDALKTFSRIREKNVI 235

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW + VS    NG    G   F   + +   + ++ + T  LS C       +   ++ L
Sbjct: 236 SWTSAVSACADNGAPVKGLRLFVEMIAVDI-KPNEFTLTSALSQCCEILSLELGTQVYSL 294

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG------LVQN 235
               GYE  + V N+L+  Y K G      ++F  M   +++TW A+I+G      L ++
Sbjct: 295 CIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKD 354

Query: 236 QLY-----EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
            L       E LKLF K++L  + P+  T  S +  CS + A+ +G QIH    K    S
Sbjct: 355 NLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLS 414

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D+ + ++L+ MYSKCGS+E A + F        ++ T ++ GF+Q+G  ++A+ +F  M 
Sbjct: 415 DVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMS 474

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--IIKSDFTSNPFVNN--GLINMYSKC 406
            AG+   PN V+ V GV    +  G+  Q  +   I++  +   P +++   +++M+ + 
Sbjct: 475 LAGVR--PNAVTFV-GVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRL 531

Query: 407 GDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGN---GFKALELYEEMKLEGVEPTD 459
           G LE ++    +M    S   W++ IA    HGN   GF A E     +L  ++P D
Sbjct: 532 GRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAE-----QLLSLKPKD 583



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS+ ++      G  +HA  IKT             +  ++  SL+S Y KC  + 
Sbjct: 384 LSSVLSVCSRMLAIEQGEQIHAQTIKT----------GFLSDVIVSTSLISMYSKCGSIE 433

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A K F +M  R  ++W +M++GF ++G        F+  + L   + +  +F  +LSAC
Sbjct: 434 RASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFE-DMSLAGVRPNAVTFVGVLSAC 492

Query: 167 DRS 169
             +
Sbjct: 493 SHA 495


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 208/622 (33%), Positives = 326/622 (52%), Gaps = 67/622 (10%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + N+L++ Y +C  + +A  +FD++  +   D +SWN++V+  ++          F    
Sbjct: 186 VCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFS--- 242

Query: 148 ELGFYQLDQA--------SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
           E+     ++A        S   IL AC   +     K IH      G   +  V NALI 
Sbjct: 243 EMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALID 302

Query: 200 SYFKCGSSSSGRKVFGEMRVRNV-----------------------------------IT 224
           +Y KCGS +   KVF  M  ++V                                   IT
Sbjct: 303 TYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVIT 362

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W+AVI+G  Q    +E L  F +M L    PNS+T +S + AC+ L AL +G +IH    
Sbjct: 363 WSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSL 422

Query: 285 KLALQS------------DLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTVIL 330
           K  L S            DL + +AL+DMYSKC S + A  IF+     E + V+ TV++
Sbjct: 423 KKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMI 482

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G+AQ G   +A+++F +M+     + PN   +S +L       +L +GKQIH+ + +  
Sbjct: 483 GGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHH 542

Query: 389 F--TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               S  FV N LI+MYSKCGD++ +  VF  M  RN VSW SM++ +  HG G +AL++
Sbjct: 543 EYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDI 602

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +++M+  G  P D++FL LL+ACSH G+V++G+ +   M   + +   AEHYACV+D++ 
Sbjct: 603 FDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLA 662

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R G L +A   I+ MP++P  ++W ALL AC +H + E+ +YA  KL   + ++   Y L
Sbjct: 663 RCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTL 722

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NIY+ + RWK+ A+  + MK+ G+ K  G SW++ +K   SF V D+ HP +  I+ +
Sbjct: 723 ISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSL 782

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  L+  +   GYVP   F LH
Sbjct: 783 LERLIGRIKVMGYVPETNFALH 804



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 249/546 (45%), Gaps = 74/546 (13%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           +++ YL C   ++A+ + + +     V WN +V   ++ G  D   G   R L  G  + 
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG-TKP 147

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +    L AC         + +H L+   G+E  V V NAL+  Y +CGS      VF
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVF 207

Query: 215 GEMR---VRNVITWTAVISGLVQNQLYEEGLKLFVKM----HLGLINPNS--LTYLSSVM 265
            E+    + +VI+W ++++  V+       L+LF +M    H    N  S  ++ ++ + 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILP 267

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE------ 319
           AC+ L+AL + ++IH    +    +D  + +AL+D Y+KCGS+ DA ++F   E      
Sbjct: 268 ACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVS 327

Query: 320 -----------------------------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
                                         LD ++ + ++ G+AQ G  +EA+  F +M+
Sbjct: 328 WNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMI 387

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTS------------NPFV 395
             G E  PN V+ ++ +     SLG    G +IH+  +K    S            +  V
Sbjct: 388 LDGSE--PNSVT-IISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMV 444

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEM--K 451
            N LI+MYSKC   + +  +F  +    RN V+W  MI  +A++G+   AL+++ EM  K
Sbjct: 445 YNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISK 504

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGL 510
              V P   T   +L AC+H+  +  G +    +T  H   P     A C++DM  + G 
Sbjct: 505 PYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGD 564

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMA 568
           +  AR+  + MP + +V  W +++    +HG  +      +K+  A   PD  +  +L+ 
Sbjct: 565 VDTARNVFDSMPKRNEV-SWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL- 622

Query: 569 NIYSCS 574
             Y+CS
Sbjct: 623 --YACS 626



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 197/444 (44%), Gaps = 62/444 (13%)

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           Y    ++G  ++ SY  CG++     V   +     + W  ++   ++    +  + +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M      P+  T   ++ AC  L + C GR +HG++     +S++ + +AL+ MYS+CG
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG 198

Query: 307 SVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           S+EDA  +F+        D +S   I+    +      A++LF +M     E   N  S 
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 364 VLGVFGVD------TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           ++ +  +        +L   K+IHS  I++   ++ FV N LI+ Y+KCG + D++KVF+
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-------------------------- 451
            M  ++ VSWN+M+  + + GN   A EL+E M+                          
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQE 378

Query: 452 ---------LEGVEPTDVTFLSLLHACSHVGLVNKGMEF-----------LKSMTEVHRI 491
                    L+G EP  VT +SLL AC+ +G +++GME            L +       
Sbjct: 379 ALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAA 550
                 Y  ++DM  +      ARS  + +P +  +V+ W  ++G  + +GDS      A
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSN----DA 494

Query: 551 EKLFLAQPDSPAPYILMANIYSCS 574
            K+F        PY +  N Y+ S
Sbjct: 495 LKIFSEMISK--PYAVAPNAYTIS 516



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 209/431 (48%), Gaps = 66/431 (15%)

Query: 71  IKTFEPFDNQNVYNVPNATV----IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM 126
           +K        + Y + N T     + N+L+  Y KC  M +AVK+F+ M  +D VSWN M
Sbjct: 272 LKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAM 331

Query: 127 VSGFLRNGEFDMGFGFF----KRSLEL----------GFYQ---------------LDQA 157
           V+G+ ++G F   F  F    K ++ L          G+ Q               LD +
Sbjct: 332 VTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGS 391

Query: 158 ---SFTII--LSACDRSELSLVSK--MIH------CLVYL------CGYEEEVTVGNALI 198
              S TII  LSAC  + L  +S+   IH      CL+ L       G  E++ V NALI
Sbjct: 392 EPNSVTIISLLSAC--ASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALI 449

Query: 199 TSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLIN 254
             Y KC S  + R +F  +  R RNV+TWT +I G  Q     + LK+F +M      + 
Sbjct: 450 DMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVA 509

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAW 312
           PN+ T    +MAC+ L AL  G+QIH  + +      S   + + L+DMYSKCG V+ A 
Sbjct: 510 PNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTAR 569

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F+   + + VS T ++ G+  +G  +EA+ +F KM KAG    P+ +S ++ ++    
Sbjct: 570 NVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV--PDDISFLVLLYACSH 627

Query: 373 SLGLGKQIHSL-IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNS-VSWN 428
           S  + + ++   I++ D+       +   +I++ ++CG L+ + K    M    S V W 
Sbjct: 628 SGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWV 687

Query: 429 SMIAAFARHGN 439
           ++++A   H N
Sbjct: 688 ALLSACRVHSN 698



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 22/304 (7%)

Query: 30  QDPTSSTSKLVLD----NYVDISRLLSISAKEGHFHLGPSLHASFIKT--FEPFDNQNVY 83
           Q+   +  +++LD    N V I  LLS  A  G    G  +HA  +K       ++    
Sbjct: 377 QEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGD 436

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD--TVSWNTMVSGFLRNGEFDMGFG 141
                 +++N+L+  Y KC   + A  +FD +P R+   V+W  M+ G+ + G+ +    
Sbjct: 437 GDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALK 496

Query: 142 FFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCG-YEEEVT-VGNAL 197
            F   +    Y +   ++TI  IL AC       + K IH  V     YE  V  V N L
Sbjct: 497 IFSEMISKP-YAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCL 555

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           I  Y KCG   + R VF  M  RN ++WT+++SG   +   +E L +F KM      P+ 
Sbjct: 556 IDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDD 615

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWK-----LALQSDLCIESALMDMYSKCGSVEDAW 312
           +++L  + ACS    + +G     I+ +      + +   C+    +D+ ++CG ++ AW
Sbjct: 616 ISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACV----IDLLARCGRLDKAW 671

Query: 313 QIFE 316
           +  +
Sbjct: 672 KTIQ 675



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 96/246 (39%), Gaps = 44/246 (17%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N   IS +L   A      +G  +HA   +  E       Y  P+   + N L+  Y
Sbjct: 508 VAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHE-------YE-PSVYFVANCLIDMY 559

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A  +FD MP R+ VSW +M+SG+  +G        F +  + GF   D  SF
Sbjct: 560 SKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVP-DDISF 618

Query: 160 TIILSACD---------------RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
            ++L AC                R +  +V+   H   Y C           +I    +C
Sbjct: 619 LVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEH---YAC-----------VIDLLARC 664

Query: 205 GSSSSGRKVFGEMRVR-NVITWTAVISGLVQN---QLYEEGLKLFVKMHLGLINPNSLTY 260
           G      K   EM +  + + W A++S    +   +L E  L   V M     N  S T 
Sbjct: 665 GRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAE--NDGSYTL 722

Query: 261 LSSVMA 266
           +S++ A
Sbjct: 723 ISNIYA 728


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/455 (40%), Positives = 273/455 (60%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLI 253
           N LI  + + G   S  KVF EM  RNV TW A++SGL+Q +  E GL LF +MH LG +
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+  T  S +  C+GL+A   G+Q+H  + K   + +L + S+L  MY K GS+ +  +
Sbjct: 87  -PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           + +     + V+   ++ G AQNG  E  + L+  M  +G+  D   + +V+       +
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELAT 205

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G+QIH+  IK+   S   V + LI+MYSKCG LEDS+K        +SV W+SMIAA
Sbjct: 206 LFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAA 265

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG G +A+ L+E+M+ EG+   DVTFLSLL+ACSH GL  KGM F K M E + + P
Sbjct: 266 YGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKP 325

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           R EHY CVVD++GR+G L EA + I  MP++ DV++W+ LL AC IH +++M    AE++
Sbjct: 326 RLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEI 385

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P   A Y+L++NI++ + RWK+ +K    M++  V KE G+SW+E++ +V  F + 
Sbjct: 386 LRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMG 445

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           DK HP ++ I   L EL+  M   GYVP+   + H
Sbjct: 446 DKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFH 480



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 190/382 (49%), Gaps = 6/382 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ +++   + +A+K+FD+M  R+  +WN MVSG ++    + G   F+   ELGF 
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +   +L  C     S   K +H  V   GYE  + VG++L   Y K GS   G K
Sbjct: 87  P-DEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           V   MR+RNV+ W  +I+G  QN  +E  L L+  M +  + P+ +T +S + + + L  
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELAT 205

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+QIH    K    S + + S+L+ MYSKCG +ED+ +     E  D V  + ++  
Sbjct: 206 LFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAA 265

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  +G  EEA+ LF +M + G+  +     ++L     +     G     L+++  +   
Sbjct: 266 YGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK-YGLK 324

Query: 393 PFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEE 449
           P + +   ++++  + G L+++  +   M    + V W ++++A   H N   A    EE
Sbjct: 325 PRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEE 384

Query: 450 -MKLEGVEPTDVTFLSLLHACS 470
            ++L   +      LS +HA +
Sbjct: 385 ILRLNPQDSATYVLLSNIHASA 406



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 14/251 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  +K    F+           V+ +SL   Y+K   +    K+   M +R+ V+
Sbjct: 108 GKQVHAYVLKYGYEFN----------LVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVA 157

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNT+++G  +NG F+     +   +++   + D+ +   ++S+          + IH   
Sbjct: 158 WNTLIAGNAQNGHFEGVLDLYNM-MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEA 216

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G    V V ++LI+ Y KCG      K   +    + + W+++I+    +   EE +
Sbjct: 217 IKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAV 276

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            LF +M    +  N +T+LS + ACS  GL+    G     ++ K  L+  L   + ++D
Sbjct: 277 HLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGF-FKLMVEKYGLKPRLEHYTCVVD 335

Query: 301 MYSKCGSVEDA 311
           +  + G +++A
Sbjct: 336 LLGRSGCLDEA 346



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 12/174 (6%)

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N   +N LIN + + GDL+ +IKVF  M  RN  +WN+M++   +       L L+ EM 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVGR 507
             G  P + T  S+L  C+ +     G +     LK   E + +       + +  M  +
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVG-----SSLAHMYMK 136

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPD 559
           +G L E    I+ M ++ +V+ W  L+   + +G  E  +  Y   K+   +PD
Sbjct: 137 SGSLGEGEKVIKAMRIR-NVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPD 189


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 190/522 (36%), Positives = 293/522 (56%), Gaps = 7/522 (1%)

Query: 130 FLRNGEFDMGFGFFKRSL-ELGFYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGY 187
            LR  + D G G +   L + G    D   ++ +L  C R       +++H  LV     
Sbjct: 60  LLRKSQSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFL 119

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           +  + + N ++  Y KCG     R++F EM  ++++TWTA+I+G  QN    + L LF +
Sbjct: 120 DNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQ 179

Query: 248 M-HLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           M  LGL  PN  T LSS++  SG +  L  G Q+H    K   QS + + SAL+DMY++C
Sbjct: 180 MLRLGL-QPNHFT-LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARC 237

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G ++ A   F+       VS   ++ G A+ G  E A+ L  KM +   +      S+V 
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVF 297

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L  GK +H+ +IKS      F+ N L++MY+K G ++D+ +VF R+   + V
Sbjct: 298 SACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVV 357

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN+M+   A+HG G + L+ +E+M   G+EP +++FL +L ACSH GL+++G+ + + M
Sbjct: 358 SWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM 417

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
            + +++ P   HY   VD++GR GLL  A  FI  MP++P   VW ALLGAC +H + E+
Sbjct: 418 KK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMEL 476

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           G YAAE+ F   P    P +L++NIY+ +GRW++ AK  K MKE GV K+   SW+EIE 
Sbjct: 477 GVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            VH FV +D+ HPQ   I G   E+   + + GYVP+   +L
Sbjct: 537 AVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVL 578



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 201/424 (47%), Gaps = 19/424 (4%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ +Y   S+LL    + G    G  +HA  + +         + + N  V+ N +++ Y
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDS---------HFLDNHLVLQNIIVNMY 133

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +A ++FD+MP +D V+W  +++GF +N         F + L LG  Q +  + 
Sbjct: 134 AKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGL-QPNHFTL 192

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           + +L A            +H      GY+  V VG+AL+  Y +CG   + +  F  M  
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++ ++W A+ISG  +    E  L L  KM      P   TY S   AC+ + AL +G+ +
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWV 312

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + K  L+    I + L+DMY+K GS++DA ++F+   + D VS   +L G AQ+G  
Sbjct: 313 HAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLG 372

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
           +E +  F +M++ GIE  PN +S +  +     S  L + ++   +   +   P V +  
Sbjct: 373 KETLDRFEQMLRIGIE--PNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV 430

Query: 398 GLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
             +++  + G L D  + F R  P    +  W +++ A   H N    L +Y   +   +
Sbjct: 431 TFVDLLGRVG-LLDRAERFIREMPIEPTAAVWGALLGACRMHKN--MELGVYAAERAFEL 487

Query: 456 EPTD 459
           +P D
Sbjct: 488 DPHD 491


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/521 (35%), Positives = 291/521 (55%), Gaps = 5/521 (0%)

Query: 130 FLRNGEFDMGFGFFKRSL-ELGFYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGY 187
            LR  + D G G +   L + G    D   ++ +L  C R       +++H  LV     
Sbjct: 60  LLRKSQSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFL 119

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           +  + + N ++  Y KCG     R++F EM  ++++TWTA+I+G  QN    + L LF +
Sbjct: 120 DNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQ 179

Query: 248 MHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M      PN  T LSS++  SG +  L  G Q+H    K   QS + + SAL+DMY++CG
Sbjct: 180 MLRLGFQPNHFT-LSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            ++ A   F+       VS   ++ G A+ G  E A+ L  KM +   +      S+VL 
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS 298

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                 +L  GK +H+ +IKS      F+ N L++MY+K G ++D+ +VF R+   + VS
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+M+   A+HG G + L+ +E+M   G+EP +++FL +L ACSH GL+++G+ + + M 
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + +++ P   HY   VD++GR GLL  A  FI  MP++P   VW ALLGAC +H + E+G
Sbjct: 419 K-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELG 477

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
            YAAE+ F   P    P +L++NIY+ +GRW++ AK  K MKE GV K+   SW+EIE  
Sbjct: 478 VYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENA 537

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           VH FV +D+ HP+   I G   E+   + + GYVP+   +L
Sbjct: 538 VHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVL 578



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 195/404 (48%), Gaps = 17/404 (4%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           ++ +Y   S+LL    + G    G  +HA  + +         + + N  V+ N +++ Y
Sbjct: 83  LVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDS---------HFLDNHLVLQNIIVNMY 133

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + +A ++FD+MP +D V+W  +++GF +N         F + L LGF Q +  + 
Sbjct: 134 AKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGF-QPNHFTL 192

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           + +L A            +H      GY+  V VG+AL+  Y +CG   + +  F  M  
Sbjct: 193 SSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPT 252

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++ ++W A+ISG  +    E  L L  KM      P   TY S + AC+ + AL +G+ +
Sbjct: 253 KSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWV 312

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + K  L+    I + L+DMY+K GS++DA ++F+   + D VS   +L G AQ+G  
Sbjct: 313 HAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLG 372

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
           +E +  F +M++ GIE  PN +S +  +     S  L + ++   +   +   P V +  
Sbjct: 373 KETLDRFEQMLRIGIE--PNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYV 430

Query: 398 GLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGN 439
             +++  + G L D  + F R  P    +  W +++ A   H N
Sbjct: 431 TFVDLLGRVG-LLDRAERFIREMPIEPTAAVWGALLGACRMHKN 473


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/506 (34%), Positives = 291/506 (57%), Gaps = 7/506 (1%)

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           + LE+ F   D      +L+ C         + +H  +    YE  V +   LI  Y KC
Sbjct: 4   QGLEVEFQGYDS-----VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKC 58

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                 R+V  EM  RNV++WTA+ISG  Q     E L LFV+M +    PN  T+ + +
Sbjct: 59  RCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVL 118

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            +C+       GRQIH ++ K + +S + + S+L+DMY+K G + +A ++F+   E D V
Sbjct: 119 TSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVV 178

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T I+ G+AQ G +EEA+ LF ++ + G+  +    ++VL       +L  G+Q+HS +
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +++       + N LI+MYSKCG L  S ++F  M  R  +SWN+M+  +++HG G +A+
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAV 298

Query: 445 ELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGME-FLKSMTEVHRISPRAEHYACVV 502
           EL++ MK E  V+P  VTFL++L  CSH G+ ++G+E F + + +     P  EHY CVV
Sbjct: 299 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 358

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D+ GRAG + EA  FI++MP +P   +W +LLGAC +H +  +G++ A +L   + ++  
Sbjct: 359 DLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAG 418

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y++++N+Y+ +GRW +     + MKE  V KE G SWIE+++ +H+F   D+ HP+ + 
Sbjct: 419 NYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEE 478

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           +   + EL   + + GYVP    +L+
Sbjct: 479 VFAKVRELSIKIKEAGYVPELSCVLY 504



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 197/383 (51%), Gaps = 19/383 (4%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +HA  IKT +EP              +   L+  Y KC  + +A ++ D+MP R+ V
Sbjct: 29  GQRVHAHMIKTCYEP-----------PVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVV 77

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  M+SG+ + G        F   L  G    ++ +F  +L++C  S    + + IH L
Sbjct: 78  SWTAMISGYSQRGYASEALHLFVEMLMSGTAP-NEFTFATVLTSCTSSSGFQLGRQIHSL 136

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V    +E  + VG++L+  Y K G     R+VF  +  R+V++ TA+ISG  Q  L EE 
Sbjct: 137 VIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF ++    +  N +TY S + A SGL AL  GRQ+H  + +  L   + ++++L+DM
Sbjct: 197 LDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDM 256

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           YSKCGS+  + +IF+   E   +S   +LVG++++G   EA++LF K++K   ++ P+ V
Sbjct: 257 YSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELF-KLMKEENKVKPDSV 315

Query: 362 S--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFS 417
           +  AVL           G +I   ++       P + +   +++++ + G +E++ +   
Sbjct: 316 TFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 375

Query: 418 RMAPRNSVS-WNSMIAAFARHGN 439
           +M    + + W S++ A   H N
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHQN 398



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 10/124 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NYV  + +L+  +       G  +H+  ++   PF            V+ NSL+  Y KC
Sbjct: 211 NYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF----------YVVLQNSLIDMYSKC 260

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  + ++FD MP R  +SWN M+ G+ ++G        FK   E    + D  +F  +
Sbjct: 261 GSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAV 320

Query: 163 LSAC 166
           LS C
Sbjct: 321 LSGC 324


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/596 (32%), Positives = 312/596 (52%), Gaps = 23/596 (3%)

Query: 55  AKEGHFHLGP--------SLHASFIKTFEPFDNQNVYNVPNATVIW-NSLLSFYLKCDQM 105
           A   HFH  P         +  S +++  PF        P    +W  +L+  Y      
Sbjct: 7   ASSPHFHPIPLIVRNSLQWISNSTLQSNPPF-------TPEGPSVWATNLIKSYFDKGLT 59

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--IL 163
           R A  LF+++P RD V+W  M+ GF     +   +  F   L     ++   +FT+  +L
Sbjct: 60  REACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR---SEVQPNAFTMSSVL 116

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF-KCGSSSSGRKVFGEMRVRNV 222
            AC   +      + H L    G +  V V NAL+  Y   C +      VF ++ ++  
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++WT +I+G         GL  F +M L  + PNS ++  +  AC+ + +   G+QIH  
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K  L  D  + ++++DMY +C  + DA + F    E + ++   ++ G+ ++    E+
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYERSD-SSES 295

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G + +    +++         L  G+Q+H  I++  F  N  + N LI+M
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG + DS K+F  M  R+ VSW +M+  +  HG G +A++L++EM   G++P  + F
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + +L  CSH GLV+KG+++ +SM E + I+P  E Y CVVD++GRAG + EA   +E MP
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            +PD  VW ALLGAC  +  S +G  AA+++   +P+    Y+L++ IY+  G+W E AK
Sbjct: 476 FEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYAAEGKWGEFAK 535

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
             K MK M   KE G SWIEI  +V+SFVV  KM P  + +H V+  L+  M D+G
Sbjct: 536 MRKLMKGMNKKKEVGKSWIEIRNEVYSFVVGAKMGPHIEWVHKVIDVLIWHMKDDG 591


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 326/576 (56%), Gaps = 34/576 (5%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR---- 145
           V WNS+L+ Y +  +MR  ++ F++M  RD VSWN MV GF+  G+ +  + FF++    
Sbjct: 172 VSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNP 231

Query: 146 ------SLELGFYQLDQ-ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV----- 193
                 ++  GF +  + A    +        +   + MI   V  C  +E +++     
Sbjct: 232 NTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP 291

Query: 194 ------GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
                    +I  Y + G     R++  +M  RNV   TA+ISG VQN+  ++  ++F +
Sbjct: 292 EKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQ 351

Query: 248 MHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGI-LWKLALQSDLCIESALMDMYSKC 305
           + +  ++  N  T ++    C        GR    + L+K  ++ D+   + ++  Y++ 
Sbjct: 352 ISIRDVVCWN--TMIAGYSQC--------GRMDEALHLFKQMVKKDIVSWNTMVASYAQV 401

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G ++ A +IFE  +E + VS   ++ G  QNG   +A++ F+ M   G + D +  +  L
Sbjct: 402 GQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGL 461

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L +GKQ+H L++KS + ++ FV+N LI MY+KCG +  +  +F  +   + V
Sbjct: 462 SSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVV 521

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWNS+IAA+A +GNG +AL+L+ +M++EGV P +VTF+ +L ACSHVGL+++G++  K M
Sbjct: 522 SWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCM 581

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
            + + I P AEHYAC+VD++GRAG L EA   +  M +  +  +W ALLGAC IHG+ E+
Sbjct: 582 VQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLEL 641

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
            K+AAEKL   +P   + Y+L++N+ + +GRW E A+  + MKE G +K+ G SWIE++ 
Sbjct: 642 AKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQN 701

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +VH+F+ +D  HP+A  +  +L  L   M +    P
Sbjct: 702 RVHAFLSEDPAHPRAVELCHILRSLTAHMRNTAKCP 737



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 212/466 (45%), Gaps = 90/466 (19%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++++ Y K  Q   A +LFD MP +D VSWN+M++G+ RNGE  +G  FF+   E    
Sbjct: 144 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE---- 199

Query: 153 QLDQASFTIIL----------SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
             D  S+ +++          S+ +  E       +  +  LCG+               
Sbjct: 200 -RDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFA-------------- 244

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           + G  +  R++F +M +RNV+ W A+I+  VQN   +E + LF++M       NS+++ +
Sbjct: 245 RFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMP----EKNSISWTT 300

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +     +  L E RQ+   +       ++  ++A++  Y +   ++DA QIF      D
Sbjct: 301 VINGYVRMGKLDEARQLLNQM----PYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRD 356

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            V    ++ G++Q G  +EA+ LF +MVK  I     MV++                   
Sbjct: 357 VVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVAS------------------- 397

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
                               Y++ G ++ +IK+F  M  +N VSWNS+I+   ++G+   
Sbjct: 398 --------------------YAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--- 499
           AL+ +  M  EG +P   TF   L +C+H+  +  G        ++H++  ++ +     
Sbjct: 438 ALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVG-------KQLHQLVMKSGYATDLF 490

Query: 500 ---CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
               ++ M  + G +  A    + +    DV+ W +L+ A +++G+
Sbjct: 491 VSNALITMYAKCGSISSAELLFKDID-HFDVVSWNSLIAAYALNGN 535



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 26/331 (7%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N  IT   K G      KVF  M  +N +T  ++IS   +N    +  +LF     G+  
Sbjct: 19  NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFD----GMPQ 74

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            N +++ S + A      + E RQ    L+      DL   + ++  Y++ G +  A  +
Sbjct: 75  RNIVSWNSMIAAYLHNDRVEEARQ----LFDKMPTRDLYSWTLMITCYTRNGELAKARNL 130

Query: 315 FEFAE-ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           F     + + V    ++ G+A+N   +EA +LF  M    +    +M++     +  +  
Sbjct: 131 FNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTG----YTRNGE 186

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           + LG Q    + + D  S   + +G +    + GDL  S + F ++   N+VSW +M+  
Sbjct: 187 MRLGLQFFEEMAERDVVSWNLMVDGFV----EVGDLNSSWEFFEKIPNPNTVSWVTMLCG 242

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           FAR G   +A  L+++M +  V   +    + +  C     V++ +     M E + IS 
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCH----VDEAISLFMEMPEKNSIS- 297

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
               +  V++   R G L EAR  + +MP +
Sbjct: 298 ----WTTVINGYVRMGKLDEARQLLNQMPYR 324



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 372 TSLGLGKQIHSLI--IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           T LG   QI   I   +     N   +N +I+ ++K G + D+ ++F  M  RN VSWNS
Sbjct: 23  TQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNS 82

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           MIAA+  +    +A +L+++M      PT D+   +L+  C       +  E  K+    
Sbjct: 83  MIAAYLHNDRVEEARQLFDKM------PTRDLYSWTLMITC-----YTRNGELAKARNLF 131

Query: 489 HRISPRAEHYACVVDMVGRAG--LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + +  +     C   + G A      EAR   + MP K D++ W ++L   + +G+  +G
Sbjct: 132 NLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK-DLVSWNSMLTGYTRNGEMRLG 190



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F +N  I    K G ++++IKVF  M  +N+V+ NSMI+AFA++G    A +L++ M   
Sbjct: 16  FRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQR 75

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            +    V++ S++ A  H   V +  +    M      S     +  ++    R G L +
Sbjct: 76  NI----VSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYS-----WTLMITCYTRNGELAK 126

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY-AAEKLFLAQP 558
           AR+    +P K     W  +     + G ++  ++  A +LF A P
Sbjct: 127 ARNLFNLLPYK-----WNPVCCNAMVAGYAKNRQFDEARRLFDAMP 167


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/541 (33%), Positives = 303/541 (56%), Gaps = 36/541 (6%)

Query: 143 FKRSLELGFYQLDQAS---FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
            K +L++  +Q+D+ S   ++ ++ +C +S L    K +H  + L G+   + + N L+ 
Sbjct: 55  LKEALQI-LHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLE 113

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM----------- 248
            Y KC S    +K+F EM  R++ +W  +ISG  +  L +E   LF KM           
Sbjct: 114 MYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAM 173

Query: 249 ---HLGLINPNSLTYLSSVMACSG------------------LQALCEGRQIHGILWKLA 287
              ++    PN    L  +M  S                   +  L  G++IHG + +  
Sbjct: 174 ISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTG 233

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L SD  + SAL DMY KCGS+E+A  IF+   + D V+ T ++  + Q+G  +E   LF 
Sbjct: 234 LDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFA 293

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            ++++GI  +    S VL      TS  LGK++H  + +  F    F  + L++MYSKCG
Sbjct: 294 DLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCG 353

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           ++  + +VF      +  SW S+IA +A++G   +A+  +E +   G +P  +TF+ +L 
Sbjct: 354 NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLS 413

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC+H GLV+KG+++  S+ E + ++  A+HYAC++D++ R+G   EA + I +M +KPD 
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            +W +LLG C IHG+ ++ + AAE LF  +P++PA Y+ +ANIY+ +G W E AK  K M
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTM 533

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            + GV K+ G+SWI I++ VH F+V D  HP++  I+  L +L + M +EG+VP+  F+L
Sbjct: 534 DDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVL 593

Query: 648 H 648
           H
Sbjct: 594 H 594



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 208/434 (47%), Gaps = 42/434 (9%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL- 149
           I N LL  Y KCD + ++ KLFD+MP RD  SWN ++SG+ + G        F +  E  
Sbjct: 107 ILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERD 166

Query: 150 ---------GFYQLDQASFTI-ILSACDRSELS--------------------LVSKMIH 179
                    G+ + D+ +  + +     RS+ S                     + K IH
Sbjct: 167 NFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIH 226

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             +   G + +  V +AL   Y KCGS    R +F +M  R+++TWTA+I    Q+   +
Sbjct: 227 GYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRK 286

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           EG  LF  +    I PN  T+   + AC+   +   G+++HG + ++         SAL+
Sbjct: 287 EGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALV 346

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
            MYSKCG++  A ++F+   + D  S T ++ G+AQNG  +EA++ F  +VK+G +  P+
Sbjct: 347 HMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQ--PD 404

Query: 360 MVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            ++ V GV       GL  +     HS+  +   T        +I++ ++ G  +++  +
Sbjct: 405 HITFV-GVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENI 463

Query: 416 FSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVG 473
            S+M+ + +   W S++     HGN  K  +   E   E +EP +  T+++L +  +  G
Sbjct: 464 ISKMSMKPDKFLWASLLGGCRIHGN-LKLAQRAAEALFE-IEPENPATYVTLANIYATAG 521

Query: 474 LVNKGMEFLKSMTE 487
           + ++  +  K+M +
Sbjct: 522 MWSEVAKIRKTMDD 535


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/543 (33%), Positives = 307/543 (56%), Gaps = 11/543 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++S Y +C +  +A+K+FD++   D VSW   + G   +G        F+  L LG  
Sbjct: 13  NAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI-GTASDGH--EAVELFRIVLSLG-- 67

Query: 153 QLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            LD   +T+I  LS     +     K I  L +  GY + V+V NAL++ Y KCG     
Sbjct: 68  -LDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDA 126

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF  M +R+ ++W ++IS   +N    + L++F +M    + P   T  S + A S  
Sbjct: 127 CRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNS 186

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
               +  QIH ++ K     D+ + S L+  Y +C S++++ ++F   ++++ V +  ++
Sbjct: 187 NNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMI 246

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             F + G+  +A+ L+  +     ++D    S +L      T + LG+ +HSL++K+ F 
Sbjct: 247 TTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGFD 306

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV + +I++Y KCG +  + K F   +  +  +WN+M+  +A HG   +  +L+ +M
Sbjct: 307 QDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKM 366

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              G+EP ++T+L +L +C H GLV +   +L SM E+H I P  EHYAC++D++GR GL
Sbjct: 367 SQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGL 426

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A+  I+ MP++PDV +WQ LL AC+IHG  E+G+ AA KL    P++ + YIL++N+
Sbjct: 427 LEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIHPENESAYILLSNL 486

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+  G W    +  K MKE  + KE G SWI++ ++ H+F V+D  HPQ+  I+   AEL
Sbjct: 487 YASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQVGRKSHTFFVNDTSHPQSKEIY---AEL 543

Query: 631 LRL 633
           +RL
Sbjct: 544 IRL 546



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 143/291 (49%), Gaps = 36/291 (12%)

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           S +   +A+M MY++CG   DA ++F+   E D VS T   +G A +G   EA++LF  +
Sbjct: 7   SSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTE-RIGTASDG--HEAVELFRIV 63

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           +  G++++   +  VL + G    L  GKQI +L  K+ +     V+N L++MY KCG +
Sbjct: 64  LSLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQI 123

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            D+ +VF  M  R+SVSWNS+I+A + +G   +ALE++ +M+   ++PT  T  S+L A 
Sbjct: 124 CDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAV 183

Query: 470 S-----------HVGLVNKGMEF--------------LKSMTEVHRISPRAE-----HYA 499
           S           H  +V  G  F                SM E  R+    +     H  
Sbjct: 184 SNSNNTKQVIQIHSLVVKCGFMFDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLN 243

Query: 500 CVVDMVGRAGLLIEARSF---IERMPVKPDVLVWQALLGACSIHGDSEMGK 547
            ++    RAG   +A +    I  +  K D   +  +L ACS   D ++G+
Sbjct: 244 TMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGR 294


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/552 (32%), Positives = 303/552 (54%), Gaps = 4/552 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y +C    +A+K+FD+M   D VSW   +       E    F  F+  L  G  
Sbjct: 258 NALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAIE---AFELFRLVLS-GNM 313

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++++     +LSA    +L    + I  L    GY    +V NALI  Y KCG   + R 
Sbjct: 314 EVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARH 373

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM   + ++W ++I+G  +N L ++ LK+F +M   L+ PN  T  S +   +    
Sbjct: 374 IFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNF 433

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             +  QIH  + KL    D  + S L+  Y KC  + ++ +++    +++ + +  +   
Sbjct: 434 PEQAMQIHSYIVKLGFIVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAAT 493

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
               G   +A++LF    +   E+D   +S VL   G  T L  G+ IHS+ +KS  + +
Sbjct: 494 LVHAGCHADALKLFQTGWRLHQEVDCITLSIVLKACGALTDLEYGRNIHSMALKSGMSQD 553

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + +I++Y KCG ++++ K F  ++  N V+WN+M+  +A+HG   +  EL+ +M  
Sbjct: 554 NFVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLE 613

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G++P ++T+L +L++C H GLVN+   +L SM E+H + P  EHYAC++D+ GR GLL 
Sbjct: 614 LGIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLE 673

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           +A+  I++MP+ PD  +WQ LL  C+IHG+ ++G+ AA+KL   QP++ + Y+L++N+Y+
Sbjct: 674 DAKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYA 733

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +GRW    K  + MK+  + KE G SWI++   VH F   D  HP++  I+  L  L  
Sbjct: 734 SAGRWNAVGKLRRVMKKKIICKEPGSSWIQVRGSVHYFFASDTSHPESKEIYMKLQRLYE 793

Query: 633 LMIDEGYVPNKR 644
            M    Y+   R
Sbjct: 794 EMFASPYLEQDR 805



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 129/420 (30%), Positives = 214/420 (50%), Gaps = 32/420 (7%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGE----FDMGFGFFKRSLELGFYQLDQASFTIIL 163
           A +   D P  DTVSWN+++SG+ R  +    FD+  G  +  L       D+ S + ++
Sbjct: 74  ARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGLRRSGL-----SPDEFSLSSLV 128

Query: 164 SACDRSELSLVSKMIHCLV--YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
             C   E + V+  + CL    L G+     V + L+  Y K G   S  K F E  + +
Sbjct: 129 KGCGVLEQNEVAHGV-CLKMGLLNGF-----VVSGLLDGYAKLGDVDSAEKCFKEFYIAD 182

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMH-LGL---INPNSLTYLSSVMACSGLQALCEGR 277
            + WTA++ G V N  +E+G ++FV+M  LGL   +N  SLT   SV+    L  + EG 
Sbjct: 183 SVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFSLT---SVLG--ALSDVREGE 237

Query: 278 QIHGILWKLALQSDLCIE--SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           Q+ G+  K+ L     I   +ALM+MYS+CGS  DA ++F+   E D VS T   +G A 
Sbjct: 238 QVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDVVSWTE-RIGAAY 296

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +    EA +LF  ++   +E++  M+  VL        L  G+QI  L  K+ +     V
Sbjct: 297 DAI--EAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASV 354

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           NN LI MY KCG++  +  +F  M   +SVSWNS+IA +A +G   +AL+++ +M+   +
Sbjct: 355 NNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLL 414

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P   T  S+L   ++     + M+    + ++  I   +   +C++   G+  ++ E++
Sbjct: 415 QPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGFIVDDS-MLSCLITAYGKCNMICESK 473



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 219/453 (48%), Gaps = 13/453 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELG 150
           + LL  Y K   + +A K F +  + D+V W  MV GF+ NGEF+ G   F   R L LG
Sbjct: 156 SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLG 215

Query: 151 FYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +L++ S T +L A  D  E   V  +   +  LCG    + + NAL+  Y +CGS S 
Sbjct: 216 L-ELNEFSLTSVLGALSDVREGEQVFGLSVKMGLLCGC--SIHLNNALMNMYSRCGSKSD 272

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F EM   +V++WT  I G   + +  E  +LF  +  G +  N    ++ + A   
Sbjct: 273 AIKMFDEMTEPDVVSWTERI-GAAYDAI--EAFELFRLVLSGNMEVNEYMLINVLSAMRE 329

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + L  GRQI G+  K        + +AL+ MY KCG +  A  IF+     D VS   +
Sbjct: 330 PKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSL 389

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+A+NG  ++A+++F +M    ++ +   ++++L V           QIHS I+K  F
Sbjct: 390 IAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKLGF 449

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  + + LI  Y KC  + +S +V+S ++  N +  N+M A     G    AL+L++ 
Sbjct: 450 IVDDSMLSCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQT 509

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
                 E   +T   +L AC  +  +  G   + SM     +S      + V+D+  + G
Sbjct: 510 GWRLHQEVDCITLSIVLKACGALTDLEYGRN-IHSMALKSGMSQDNFVESAVIDVYCKCG 568

Query: 510 LLIE-ARSFIERMPVKPDVLVWQALLGACSIHG 541
            + E A++F+     K +++ W A++   + HG
Sbjct: 569 TVDEAAKTFMN--VSKNNLVAWNAMVMGYAQHG 599



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 198/449 (44%), Gaps = 43/449 (9%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  +  + + ++  +   G  +  R+   +    + ++W ++ISG  + +       LF
Sbjct: 50  GFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLF 109

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
             +    ++P+  +  S V  C  L+   +    HG+  K+ L +   + S L+D Y+K 
Sbjct: 110 NGLRRSGLSPDEFSLSSLVKGCGVLE---QNEVAHGVCLKMGLLNGFVV-SGLLDGYAKL 165

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G V+ A + F+     D V  T ++ GF  NG  E+  ++FV+M   G+ ++ N  S + 
Sbjct: 166 GDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLGLELNEFS-LT 224

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFV--NNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            V G  + +  G+Q+  L +K        +  NN L+NMYS+CG   D+IK+F  M   +
Sbjct: 225 SVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPD 284

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            VSW   I A     +  +A EL+  +    +E  +   +++L A     L+  G + ++
Sbjct: 285 VVSWTERIGAAY---DAIEAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQ-IQ 340

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            + +       A     ++ M G+ G ++ AR   + M +  D + W +L     I G +
Sbjct: 341 GLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEM-LCGDSVSWNSL-----IAGYA 394

Query: 544 EMG-KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           E G    A K+F    D    Y+L  N Y+ +   +  A +               ++ E
Sbjct: 395 ENGLMKQALKVFSQMRD----YLLQPNKYTLASILEVAANS---------------NFPE 435

Query: 603 IEKQVHS------FVVDDKMHPQADTIHG 625
              Q+HS      F+VDD M     T +G
Sbjct: 436 QAMQIHSYIVKLGFIVDDSMLSCLITAYG 464



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%)

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           L  Q ++L +KS F  + F+++ ++N ++  GD   + +        ++VSWNS+I+ +A
Sbjct: 38  LTDQSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYA 97

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           R        +L+  ++  G+ P + +  SL+  C
Sbjct: 98  RFRQPGPVFDLFNGLRRSGLSPDEFSLSSLVKGC 131


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/589 (33%), Positives = 308/589 (52%), Gaps = 36/589 (6%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+   L       A +LFD++P  D  + +T++S    +G  +     +    E G  + 
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGI-KP 76

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D   F     AC  S  +L  K +H     CG   +V VGNALI +Y KC      R+VF
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            ++ VR+V++WT++ S  V+     +G+ +F +M    + PN +T  S + AC+ L+ L 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV--- 331
            G++IHG   +  +  +L + SAL+ +Y+KC SV +A  +F+     D VS   +L    
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 332 --------------------------------GFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
                                           G  +NG  EEA+++F KM K G + +  
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 316

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +S++L       +L +GK+IH  + +     +      L+ MY+KCGDL  S  VF  M
Sbjct: 317 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 376

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             ++ V+WN+MI A A HGNG +AL L+++M L  V+P  VTF  +L  CSH  LV +G+
Sbjct: 377 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 436

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           +   SM   H + P A HY+CVVD+  RAG L EA  FI+ MP++P    W ALL AC +
Sbjct: 437 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           + + E+ K +A+KLF  +P++P  Y+ + NI   +  W E ++    MKE G+ K  G S
Sbjct: 497 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 556

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           W+++  +VH+FVV DK + ++D I+  L EL+  M   GY P+  ++L 
Sbjct: 557 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQ 605



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 188/405 (46%), Gaps = 39/405 (9%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +G  LI      G  +  R++F  +   +  T + +IS L  + L  E +K++  +    
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           I P+   +L++  AC+        +++H    +  + SD+ + +AL+  Y KC  VE A 
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGAR 133

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           ++F+     D VS T +   + + GF  + M +F +M  +G++ +P  VS++L       
Sbjct: 134 RVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELK 193

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  GK+IH   ++     N FV + L+++Y+KC  + ++  VF  M  R+ VSWN ++ 
Sbjct: 194 DLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLT 253

Query: 433 AFAR-----------------------------------HGNGFKALELYEEMKLEGVEP 457
           A+ +                                   +G   +A+E++ +M+  G +P
Sbjct: 254 AYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKP 313

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            ++T  S+L ACS    +  G E    +    ++       A ++ M  + G L  +R+ 
Sbjct: 314 NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA-LLYMYAKCGDLNLSRNV 372

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDS 560
            + M  K DV+ W  ++ A ++HG+ +   +  +K+ L+  QP+S
Sbjct: 373 FDMMRRK-DVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNS 416



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 194/429 (45%), Gaps = 46/429 (10%)

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           ++  E  D+     V +   + N+L+  Y KC  +  A ++FDD+ +RD VSW ++ S +
Sbjct: 95  LRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 154

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYE 188
           ++ G    G   F+   E+G+  +     T+  IL AC   +     K IH      G  
Sbjct: 155 VKCGFPRKGMDVFR---EMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMV 211

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
             + V +AL++ Y KC S    R VF  M  R+V++W  V++   +N+ YE+G  LF+KM
Sbjct: 212 VNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKM 271

Query: 249 HLGLI-----------------------------------NPNSLTYLSSVMACSGLQAL 273
               +                                    PN +T  S + ACS  + L
Sbjct: 272 SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENL 331

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G++IH  +++     DL   +AL+ MY+KCG +  +  +F+     D V+   +++  
Sbjct: 332 RMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIAN 391

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           A +G  +EA+ LF KM+ + ++ +    + VL        +  G QI + + + D    P
Sbjct: 392 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGR-DHLVEP 450

Query: 394 FVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEM 450
             N+   ++++YS+ G L ++ K    M    + S W +++AA   + N    L      
Sbjct: 451 DANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKN--VELAKISAK 508

Query: 451 KLEGVEPTD 459
           KL  +EP +
Sbjct: 509 KLFEIEPNN 517


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 196/589 (33%), Positives = 311/589 (52%), Gaps = 42/589 (7%)

Query: 66  LHASFIKTFEPF----DNQNVYN--VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           LH   +  +  F    D QN+++  +      WN+LLS Y K   ++N    FD MP RD
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +VS+NT ++GF  N         FKR    GF   +    +I+ ++    +L    K IH
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLR-YGKQIH 178

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             + +  +   V + NAL   Y KCG     R +F  +  +N+++W  +ISG  +N   E
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           + + L  +M L    P+ +T +S+++A                                 
Sbjct: 239 KCIGLLHQMRLSGHMPDQVT-MSTIIAA-------------------------------- 265

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
             Y +CG V++A ++F   +E D V  T ++VG+A+NG EE+A+ LF +M+   IE D  
Sbjct: 266 --YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSY 323

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +S+V+       SL  G+ +H   I +   +N  V++ LI+MYSKCG ++D+  VF+ M
Sbjct: 324 TLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM 383

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN VSWN+MI   A++G+   ALEL+E M  +  +P +VTF+ +L AC H   + +G 
Sbjct: 384 PTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQ 443

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           E+  S++  H ++P  +HYAC+V+++GR G + +A + I+ M   PD L+W  LL  CS 
Sbjct: 444 EYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICST 503

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            GD    + AA  LF   P    PYI+++N+Y+  GRWK+ A     MK   V K  G S
Sbjct: 504 KGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFS 563

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEI+ +VH F  +D+ HP+++ I+  L  L+  + +EG+ PN   +LH
Sbjct: 564 WIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLH 612



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 188/396 (47%), Gaps = 50/396 (12%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I  +L+ SA+      G  +H S I          V N      IWN+L   Y KC ++ 
Sbjct: 158 IVSILNASAQLLDLRYGKQIHGSII----------VRNFLGNVFIWNALTDMYAKCGEIE 207

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A  LFD +  ++ VSWN M+SG+ +NG+ +   G   + + L  +  DQ + + I++A 
Sbjct: 208 QARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQ-MRLSGHMPDQVTMSTIIAA- 265

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                                             Y +CG     R+VF E + ++++ WT
Sbjct: 266 ----------------------------------YCQCGRVDEARRVFSEFKEKDIVCWT 291

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A++ G  +N   E+ L LF +M L  I P+S T  S V +C+ L +L  G+ +HG     
Sbjct: 292 AMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILA 351

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L ++L + SAL+DMYSKCG ++DA  +F      + VS   ++VG AQNG +++A++LF
Sbjct: 352 GLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYS 404
             M++   + D      +L        +  G++     I +     P +++   ++N+  
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFD-SISNQHGMTPTLDHYACMVNLLG 470

Query: 405 KCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           + G +E ++ +   MA   + + W+++++  +  G+
Sbjct: 471 RTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/503 (36%), Positives = 296/503 (58%), Gaps = 6/503 (1%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +  G  + ++  ++ +L+ C         + IH  +    +E+++ + N ++  Y KCGS
Sbjct: 96  INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGS 155

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVM 265
               + +F +M  +++++WT +ISG  Q+    E L LF KM HLG   PN  T LSS++
Sbjct: 156 LEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGF-QPNEFT-LSSLL 213

Query: 266 ACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             SG   +   GRQ+H    K     ++ + S+L+DMY++   + +A  IF      + V
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G A+ G  E  M+LF +M++ G E      S+VL       SL  GK +H+ +
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLAC-ASSGSLEQGKWVHAHV 332

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IKS      ++ N LI+MY+K G ++D+ KVF R+  ++ VSWNS+I+ +A+HG G +AL
Sbjct: 333 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 392

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+E+M    V+P ++TFLS+L ACSH GL+++G  + + M + H+I  +  H+  VVD+
Sbjct: 393 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDL 451

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG L EA  FIE MP+KP   VW ALLGAC +H + ++G YAAE++F   P    P+
Sbjct: 452 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPH 511

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+ +GR  + AK  K MKE GV KE   SW+EIE +VH FV +D  HP  + I 
Sbjct: 512 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 571

Query: 625 GVLAELLRLMIDEGYVPNKRFIL 647
            +  ++   + + GYVP+   +L
Sbjct: 572 RMWEKISGKIKEIGYVPDTSHVL 594



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 191/374 (51%), Gaps = 11/374 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N +L+ Y KC  +  A  LFD MP +D VSW  ++SG+ ++G+       F + L L
Sbjct: 141 VLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHL 200

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF Q ++ + + +L A          + +H      GY+  V VG++L+  Y +      
Sbjct: 201 GF-QPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMRE 259

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            + +F  +  +NV++W A+I+G  +    E  ++LF +M      P   TY SSV+AC+ 
Sbjct: 260 AKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTY-SSVLACAS 318

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             +L +G+ +H  + K   Q    I + L+DMY+K GS++DA ++F    + D VS   I
Sbjct: 319 SGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSI 378

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK 386
           + G+AQ+G   EA+QLF +M+KA  ++ PN ++  L V    +  GL   G+    L+ K
Sbjct: 379 ISGYAQHGLGAEALQLFEQMLKA--KVQPNEIT-FLSVLTACSHSGLLDEGQYYFELMKK 435

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALE 445
               +    +  ++++  + G L ++ K    M  + + + W +++ A   H N    L 
Sbjct: 436 HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKN--MDLG 493

Query: 446 LYEEMKLEGVEPTD 459
           +Y   ++  ++P D
Sbjct: 494 VYAAEQIFELDPHD 507


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/541 (35%), Positives = 301/541 (55%), Gaps = 1/541 (0%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   + NS+L+ Y KC ++ +A  LF+ M  RD +SWN++VSG+ + G        
Sbjct: 175 YGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQL 234

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
             R    G  + DQ +F  ++SA        V KM+H  +   G E++  +  +LI  Y 
Sbjct: 235 LIRMKTDGI-EPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYL 293

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG+ +S  ++F  M  ++VI+WTA+ISGLVQN   +  + +F +M    + P++ T  S
Sbjct: 294 KCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIAS 353

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+ L +   G  +HG + +  ++ D+  +++L+ MY+KCG +E +  +F+     D
Sbjct: 354 VLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRD 413

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   I+ G AQNG   +A+ LF +M KA    D   V ++L       +L  GK IH+
Sbjct: 414 IVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHN 473

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            + KS       ++  L++MYSKCGDL  + K F RM  ++ VSW+S+IA +  HG G  
Sbjct: 474 FVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGET 533

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL +Y +    G++P  V +LS+L ACSH GLV++G+ F  SMT+   I PR EH AC+V
Sbjct: 534 ALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIV 593

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++ RAG + EA SF +RM  KP + V   LL AC   G+ E+G   A ++ + +P +  
Sbjct: 594 DLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAG 653

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ +A+ Y+   RW    +   +MK + + K  G S+IE+   + +F  D   HPQ + 
Sbjct: 654 NYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEE 713

Query: 623 I 623
           I
Sbjct: 714 I 714



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 149/487 (30%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + I  SL++FY K    ++A K+FD M  R+ V W TM+  + R GE D+ F  +     
Sbjct: 83  SYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR 142

Query: 149 LGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            G  Q    +   +LS      L LV  + +H  V   G+  +V + N+++  Y KCG  
Sbjct: 143 QGI-QPSSVTMLGLLSGV----LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRV 197

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              + +F  M  R+VI+W +++SG  Q     E L+L ++M    I P+  T+ S V A 
Sbjct: 198 EDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAA 257

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L  G+ +HG + +  L+ D  IE++L+ MY KCG+V  A++IFE     D +S T
Sbjct: 258 AMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWT 317

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G  QN   + A+ +F +M+K+ +      +++VL       S  LG  +H  I++ 
Sbjct: 318 AMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQ 377

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
               +    N L+ MY+KCG LE S  VF RM+ R+ VSWN++++  A++G+  KAL L+
Sbjct: 378 RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLF 437

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+     P  +T +SLL AC+ +G +++G +++ +      + P       +VDM  +
Sbjct: 438 NEMRKARQRPDSITVVSLLQACASIGALHQG-KWIHNFVTKSCLGPCILIDTALVDMYSK 496

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G L  A+   +RMP + D++ W +++     HG  E         FL     P   I +
Sbjct: 497 CGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGETALRMYSD-FLHTGIQPNHVIYL 554

Query: 568 ANIYSCS 574
           + + +CS
Sbjct: 555 SILSACS 561



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 192/393 (48%), Gaps = 17/393 (4%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D  +F  ++ AC   +L       H  V + GY  +  +  +LI  Y K G + S RKVF
Sbjct: 47  DAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVF 106

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  RNV+ WT +I    +   ++    ++  M    I P+S+T L  +   SG+  L 
Sbjct: 107 DTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLL---SGVLELV 163

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             + +H  + +    SD+ + ++++++Y KCG VEDA  +FE  +  D +S   ++ G+A
Sbjct: 164 HLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q G   E +QL ++M   GIE D     +++    + + LG+GK +H  I+++    +  
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSH 283

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +   LI MY KCG++  + ++F  M  ++ +SW +MI+   ++     A+ ++  M    
Sbjct: 284 IETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR 343

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------RISPRAEHYACVVDMVGRA 508
           V P+  T  S+L AC+ +G    G       T VH      RI         +V M  + 
Sbjct: 344 VMPSTATIASVLAACAELGSFPLG-------TSVHGYILRQRIKLDIPSQNSLVTMYAKC 396

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G L ++ S  +RM  + D++ W A++   + +G
Sbjct: 397 GHLEQSCSVFDRMS-RRDIVSWNAIVSGHAQNG 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 14/279 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ +   I+ +L+  A+ G F LG S+H   ++     D      +P+     NSL++ Y
Sbjct: 344 VMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD------IPSQ----NSLVTMY 393

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  +  +FD M  RD VSWN +VSG  +NG        F   +     + D  + 
Sbjct: 394 AKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNE-MRKARQRPDSITV 452

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC         K IH  V        + +  AL+  Y KCG   S +K F  M  
Sbjct: 453 VSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQ 512

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
           +++++W+++I+G   +   E  L+++   +H G I PN + YLS + ACS    + +G  
Sbjct: 513 QDLVSWSSIIAGYGSHGKGETALRMYSDFLHTG-IQPNHVIYLSILSACSHNGLVDQGLS 571

Query: 279 -IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             H +     ++  L   + ++D+ S+ G VE+A+  ++
Sbjct: 572 FFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYK 610



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 132/247 (53%), Gaps = 3/247 (1%)

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           ++ A+I+ L     + + L  +  M      P++ T+ S V AC+ L     G   H  +
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
                 SD  I ++L++ YSK G  + A ++F+  ++ + V  T ++  + + G  + A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            ++  M + GI+  P+ V+ +LG+      L   + +H+ +I+  F S+  + N ++N+Y
Sbjct: 135 SMYNIMRRQGIQ--PSSVT-MLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVY 191

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG +ED+  +F  M  R+ +SWNS+++ +A+ GN  + L+L   MK +G+EP   TF 
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 464 SLLHACS 470
           SL+ A +
Sbjct: 252 SLVSAAA 258


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 314/601 (52%), Gaps = 16/601 (2%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            +LS+ A      LG  +H   +++           +     + N L++ Y+K   +  A 
Sbjct: 912  MLSVVAGLNCLELGKQIHGIVVRS----------GLDQVVSVGNCLINMYVKTGSVSRAR 961

Query: 110  KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
             +F  M   D VSWNTM+SG   +G  +   G F   L  G    DQ +   +L AC  S
Sbjct: 962  TVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLP-DQFTVASVLRAC--S 1018

Query: 170  ELS---LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             L     ++  IH      G   +  V   LI  Y K G       +F      ++ +W 
Sbjct: 1019 SLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWN 1078

Query: 227  AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            A++ G + +  + + L+L++ M       N +T  ++  A  GL  L +G+QI  ++ K 
Sbjct: 1079 AMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKR 1138

Query: 287  ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
                DL + S ++DMY KCG +E A +IF      D V+ T ++ G  +NG EE A+  +
Sbjct: 1139 GFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTY 1198

Query: 347  VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
              M  + ++ D    + ++    + T+L  G+QIH+  +K +   +PFV   L++MY+KC
Sbjct: 1199 HHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKC 1258

Query: 407  GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
            G++ED+  +F R       SWN+MI   A+HGN  +AL+ +EEMK  GV P  VTF+ +L
Sbjct: 1259 GNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVL 1318

Query: 467  HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
             ACSH GLV++  E   SM +++ I P  EHY+C+VD + RAG + EA   I  MP +  
Sbjct: 1319 SACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEAS 1378

Query: 527  VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
              +++ LL AC +  D E GK  AEKL   +P   A Y+L++N+Y+ + +W+  A A   
Sbjct: 1379 ASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNM 1438

Query: 587  MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
            M++  V K+ G SW++++ +VH FV  D+ H + D I+  +  +++ + +EGY+P+  F 
Sbjct: 1439 MRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFA 1498

Query: 647  L 647
            L
Sbjct: 1499 L 1499



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 216/428 (50%), Gaps = 6/428 (1%)

Query: 119  DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
            D ++WN  +S FL+ GE       F   +       D  +F ++LS         + K I
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMIN-SRVACDGLTFVVMLSVVAGLNCLELGKQI 928

Query: 179  HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
            H +V   G ++ V+VGN LI  Y K GS S  R VF +M   ++++W  +ISG   + L 
Sbjct: 929  HGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLE 988

Query: 239  EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQSDLCIESA 297
            E  + +FV +  G + P+  T  S + ACS L   C    QIH    K  +  D  + + 
Sbjct: 989  ECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTT 1048

Query: 298  LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
            L+D+YSK G +E+A  +F   +  D  S   ++ G+  +G   +A++L++ M ++G   +
Sbjct: 1049 LIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERAN 1108

Query: 358  PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
               ++      G    L  GKQI ++++K  F  + FV +G+++MY KCG++E + ++F+
Sbjct: 1109 QITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFN 1168

Query: 418  RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
             +   + V+W +MI+    +G    AL  Y  M+L  V+P + TF +L+ ACS +  + +
Sbjct: 1169 EIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQ 1228

Query: 478  GMEFLKSMTEVH-RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            G +   +  +++    P       +VDM  + G + +AR   +R      +  W A++  
Sbjct: 1229 GRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTS-RIASWNAMIVG 1285

Query: 537  CSIHGDSE 544
             + HG++E
Sbjct: 1286 LAQHGNAE 1293



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 206/437 (47%), Gaps = 29/437 (6%)

Query: 39   LVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF 98
            L+ D +   S L + S+  G  HL   +HA  +K     D          + +  +L+  
Sbjct: 1003 LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLD----------SFVSTTLIDV 1052

Query: 99   YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
            Y K  +M  A  LF +    D  SWN M+ G++ +G+F      +    E G     + +
Sbjct: 1053 YSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG-----ERA 1107

Query: 159  FTIILSACDRSELSLV----SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
              I L+   ++   LV     K I  +V   G+  ++ V + ++  Y KCG   S R++F
Sbjct: 1108 NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167

Query: 215  GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             E+   + + WT +ISG V+N   E  L  +  M L  + P+  T+ + V ACS L AL 
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALE 1227

Query: 275  EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            +GRQIH    KL    D  + ++L+DMY+KCG++EDA  +F+        S   ++VG A
Sbjct: 1228 QGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLA 1287

Query: 335  QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS--LIIKSDFTSN 392
            Q+G  EEA+Q F +M   G+   P+ V+  +GV    +  GL  + +     ++  +   
Sbjct: 1288 QHGNAEEALQFFEEMKSRGVT--PDRVT-FIGVLSACSHSGLVSEAYENFYSMQKIYGIE 1344

Query: 393  PFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEE 449
            P + +   L++  S+ G + ++ KV S M    S S + +++ A     +      + E 
Sbjct: 1345 PEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE- 1403

Query: 450  MKLEGVEPTDVTFLSLL 466
             KL  +EP+D     LL
Sbjct: 1404 -KLLALEPSDSAAYVLL 1419



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 227/498 (45%), Gaps = 54/498 (10%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFD--MGFGFFKRSL 147
            +  +L++ Y K  ++R A  LFD M +RD V WN M+  ++  G E++  + F  F R+ 
Sbjct: 764  VAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRT- 822

Query: 148  ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
              G    D       ++ C    L+ V K    ++     E ++    A  T  F     
Sbjct: 823  --GLRPDD-------VTLC---TLARVVKSKQNVL-----EWQLKQLKAYGTKLFMYDDD 865

Query: 208  SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              G          +VI W   +S  +Q     E +  FV M    +  + LT++  +   
Sbjct: 866  DDGS---------DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVV 916

Query: 268  SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            +GL  L  G+QIHGI+ +  L   + + + L++MY K GSV  A  +F    E+D VS  
Sbjct: 917  AGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWN 976

Query: 328  VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG----LGKQIHSL 383
             ++ G A +G EE ++ +FV +++ G+  D   V++VL      +SLG    L  QIH+ 
Sbjct: 977  TMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRAC---SSLGGGCHLATQIHAC 1033

Query: 384  IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
             +K+    + FV+  LI++YSK G +E++  +F      +  SWN+M+  +   G+  KA
Sbjct: 1034 AMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKA 1093

Query: 444  LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY----- 498
            L LY  M+  G     +T  +   A    GLV  G++  K +  V  +  R  +      
Sbjct: 1094 LRLYILMQESGERANQITLANAAKAAG--GLV--GLKQGKQIQAV--VVKRGFNLDLFVI 1147

Query: 499  ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG--KYAAEKLFLA 556
            + V+DM  + G +  AR     +P  PD + W  ++  C  +G  E     Y   +L   
Sbjct: 1148 SGVLDMYLKCGEMESARRIFNEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKV 1206

Query: 557  QPDSPAPYILMANIYSCS 574
            QPD    Y     + +CS
Sbjct: 1207 QPDE---YTFATLVKACS 1221



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 203/491 (41%), Gaps = 43/491 (8%)

Query: 93   NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            N+L++ Y KC  + +A KLFD  P   RD V+WN ++S          GF  F R L   
Sbjct: 665  NNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHADKAR--DGFHLF-RLLRRS 721

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            F    + +   +   C  S     ++ +H      G + +V V  AL+  Y K G     
Sbjct: 722  FVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREA 781

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            R +F  M +R+V+ W  ++   V   L  E L LF + +   + P+ +T  +        
Sbjct: 782  RVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSK 841

Query: 271  QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            Q + E        W+L     L      + MY       D             ++    L
Sbjct: 842  QNVLE--------WQL---KQLKAYGTKLFMYDDDDDGSDV------------IAWNKTL 878

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              F Q G   EA+  FV M+ + +  D      +L V      L LGKQIH ++++S   
Sbjct: 879  SWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLD 938

Query: 391  SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                V N LINMY K G +  +  VF +M   + VSWN+MI+  A  G    ++ ++ ++
Sbjct: 939  QVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDL 998

Query: 451  KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDM 504
               G+ P   T  S+L ACS +G    G       T++H  + +A           ++D+
Sbjct: 999  LRGGLLPDQFTVASVLRACSSLG---GGCHL---ATQIHACAMKAGVVLDSFVSTTLIDV 1052

Query: 505  VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
              ++G + EA  F+       D+  W A++    + GD    K     + + +    A  
Sbjct: 1053 YSKSGKMEEAE-FLFVNQDGFDLASWNAMMHGYIVSGD--FPKALRLYILMQESGERANQ 1109

Query: 565  ILMANIYSCSG 575
            I +AN    +G
Sbjct: 1110 ITLANAAKAAG 1120



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 170/394 (43%), Gaps = 42/394 (10%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM- 217
           F+I+  A   S+L L  K  H  +   G+  +  + N LIT Y KCGS SS RK+F    
Sbjct: 630 FSILRHAIAASDLPL-GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTP 688

Query: 218 -RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
              R+++TW A++S         +G  LF  +    ++    T       C    +    
Sbjct: 689 DTSRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAA 746

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
             +HG   K+ LQ D+ +  AL+++Y+K G + +A  +F+     D V   V++  +   
Sbjct: 747 ESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDT 806

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G E EA+ LF +  + G+  D   +  +  V     ++ L  Q+  L     + +  F  
Sbjct: 807 GLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNV-LEWQLKQL---KAYGTKLF-- 860

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
                MY    D  D I            +WN  ++ F + G  ++A++ + +M    V 
Sbjct: 861 -----MYDDDDDGSDVI------------AWNKTLSWFLQRGETWEAVDCFVDMINSRVA 903

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGL 510
              +TF+ +L        V  G+  L+   ++H I  R+          C+++M  + G 
Sbjct: 904 CDGLTFVVMLS-------VVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGS 956

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +  AR+   +M  + D++ W  ++  C++ G  E
Sbjct: 957 VSRARTVFWQMN-EVDLVSWNTMISGCALSGLEE 989



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 98/213 (46%), Gaps = 7/213 (3%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P   + L   +A S L     G++ H  +       D  + + L+ MYSKCGS+  A ++
Sbjct: 627 PQWFSILRHAIAASDLPL---GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKL 683

Query: 315 FEFAEEL--DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           F+   +   D V+   IL   A      +   LF  + ++ +    + ++ V  +  +  
Sbjct: 684 FDTTPDTSRDLVTWNAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSA 741

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           S    + +H   +K     + FV   L+N+Y+K G + ++  +F  M  R+ V WN M+ 
Sbjct: 742 SPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMK 801

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           A+   G  ++AL L+ E    G+ P DVT  +L
Sbjct: 802 AYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTL 834


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 312/553 (56%), Gaps = 7/553 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++L+  Y KC QM +AVK+F + P  D V W +++SG+ ++G  ++   FF R +     
Sbjct: 281 SALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKV 340

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  +   + SAC +     + + +H  V   G + ++ + N+L+  Y K GS  +   
Sbjct: 341 SPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASN 400

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM  +++I+W+ +++    N    + L LF +M    I PN +T +S + AC+ +  
Sbjct: 401 LFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISN 460

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L EG +IH +      + +  + +ALMDMY KC S E A  +F    + D ++  V+  G
Sbjct: 461 LEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSG 520

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIKSDF 389
           +A NG   E+M +F  M+ +G   D     A++ +    + LG+ +Q   +H+ +IK+ F
Sbjct: 521 YADNGMVHESMWVFRNMLSSGTRPD---AIALVKILTTISELGILQQAVCLHAFVIKNGF 577

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +N F+   LI +Y+KC  +ED+ KVF  M  ++ V+W+S+IAA+  HG G +AL+L+ +
Sbjct: 578 ENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQ 637

Query: 450 M-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           M      +P +VTF+S+L ACSH GL+ +G+     M   +++ P +EHYA +VD++GR 
Sbjct: 638 MANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRM 697

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L  A   I  MP++    +W ALLGAC IH + +MG+ AA+ LF   P+    YIL++
Sbjct: 698 GELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLS 757

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS    W    K  + +KE  ++K  G S +E++ +V SF+  D++H ++D I+ +L 
Sbjct: 758 NIYSVDENWHSATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHIYEILT 817

Query: 629 ELLRLMIDEGYVP 641
           +L   M +  + P
Sbjct: 818 KLHAKMREVAFDP 830



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 226/462 (48%), Gaps = 11/462 (2%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL--- 154
            Y +   + +A KLF + P R    WN ++  +   GE+      F++   +    +   
Sbjct: 180 LYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEER 239

Query: 155 -DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D  S +I L +C      L+ K+IH  +     + ++ VG+ALI  Y KCG  +   KV
Sbjct: 240 PDNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKV 299

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACSGLQA 272
           F E    +V+ WT++ISG  Q+   E  L  F +M +   ++P+ +T +S   AC+ L  
Sbjct: 300 FMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSN 359

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + +  L + LC+ ++L+ +Y K GS+++A  +F    + D +S + ++  
Sbjct: 360 FKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVAC 419

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A NG E + + LF +M+   I+ +   V +VL      ++L  G +IH L +   F   
Sbjct: 420 YADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEME 479

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+  L++MY KC   E ++ +F+RM  ++ ++W  + + +A +G   +++ ++  M  
Sbjct: 480 TTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLS 539

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G  P  +  + +L   S +G++ + +  L +    +         A ++++  +   + 
Sbjct: 540 SGTRPDAIALVKILTTISELGILQQAV-CLHAFVIKNGFENNQFIGASLIEVYAKCSSIE 598

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           +A    + M  K DV+ W +++ A   HG  E     A KLF
Sbjct: 599 DANKVFKGMTYK-DVVTWSSIIAAYGFHGQGE----EALKLF 635



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 187/409 (45%), Gaps = 18/409 (4%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
            S+ V  + V +  + S  A+  +F LG S+H  F+K            + N   + NSL
Sbjct: 336 VSEKVSPDPVTLVSVASACAQLSNFKLGRSVHG-FVKR---------KGLDNKLCLANSL 385

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           L  Y K   ++NA  LF +M  +D +SW+TMV+ +  NG        F   L+    + +
Sbjct: 386 LHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRI-KPN 444

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             +   +L AC           IH L    G+E E TV  AL+  Y KC S      +F 
Sbjct: 445 WVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFN 504

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  ++VI W  + SG   N +  E + +F  M      P+++  +  +   S L  L +
Sbjct: 505 RMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQ 564

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
              +H  + K   +++  I ++L+++Y+KC S+EDA ++F+     D V+ + I+  +  
Sbjct: 565 AVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGF 624

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTS 391
           +G  EEA++LF +M     +  PN V+  + +    +  GL K+       ++ K     
Sbjct: 625 HGQGEEALKLFYQMANHS-DTKPNNVT-FISILSACSHSGLIKEGINMFDIMVNKYKLKP 682

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           N      ++++  + G+L+ ++ V + M  +     W +++ A   H N
Sbjct: 683 NSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQN 731


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 216/627 (34%), Positives = 331/627 (52%), Gaps = 78/627 (12%)

Query: 59  HFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           +F LG S+H   I+  FE     NV+       + N+++S Y KC  + +A K+FD++  
Sbjct: 141 NFELGASIHGCVIRLGFE----SNVF-------VCNAVISMYGKCKAVVHARKVFDELCY 189

Query: 118 R---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-DQASFTIILSACDRSELSL 173
           R   D+V+WN++VS +      ++    F R + +G+  L D      IL  C    L L
Sbjct: 190 RGICDSVTWNSIVSVYSHCFVPNVAVSLF-REMTVGYGILPDTVGVVNILPVCGYLGLGL 248

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             + +H      G  E+V VGNAL+  Y KCG      KVF  MR ++V+TW A+++G  
Sbjct: 249 CGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYS 308

Query: 234 QNQLYEEGLKLFVKMHLGLI-----------------------------------NPNSL 258
           QN  +E+ L LF KM    I                                    PN +
Sbjct: 309 QNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVV 368

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQ-------SDLCIESALMDMYSKCGSVEDA 311
           T +S + AC+ + AL  G++ H    K  L+        DL + +AL+DMY+KC S+E A
Sbjct: 369 TLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVA 428

Query: 312 WQIFE--FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGV 367
             +F+    ++ D V+ TV++ G+AQ+G    A+QLF +M K    I PN   +S VL  
Sbjct: 429 RAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMA 488

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                +L  GKQIH+ +++     +   FV N LI+MYSK GD++ +  VF  M+ RN+V
Sbjct: 489 CARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAV 548

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SW S++  +  HG    A  +++EM+ E +    +TFL +L+ACSH      GM+F    
Sbjct: 549 SWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSH-----SGMDF---- 599

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
                + P  EHYAC+VD++GRAG L EA   I  MP++P  +VW ALL AC IH + E+
Sbjct: 600 ----GVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEEL 655

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
            ++AA+KL   + D+   Y L++NIY+ + RWK+ A+    MK  G+ K  G SW++  K
Sbjct: 656 AEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRK 715

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLR 632
            + +F V D+ H Q+  I+  LA+L++
Sbjct: 716 GMETFYVGDRTHLQSQKIYETLADLIK 742



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/507 (28%), Positives = 239/507 (47%), Gaps = 58/507 (11%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDD--MPMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLEL 149
            +L+  Y+  + + NA+ L +    P   +V W N ++   L     +     F+R   L
Sbjct: 61  TNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHALHFNSPNTALRLFRRMKTL 120

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +  D  +F  +  AC       +   IH  V   G+E  V V NA+I+ Y KC +   
Sbjct: 121 -HWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVH 179

Query: 210 GRKVFGEMRVRNV---ITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVM 265
            RKVF E+  R +   +TW +++S      +    + LF +M +G  I P+++  ++ + 
Sbjct: 180 ARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILP 239

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C  L     GRQ+HG   +  L  D+ + +AL+DMY+KCG +EDA ++FE     D V+
Sbjct: 240 VCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVT 299

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---------------------------- 357
              ++ G++QNG  E+A+ LF KM +  IE D                            
Sbjct: 300 WNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMC 359

Query: 358 -----PNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-------SDFTSNPFVNNGLINM 402
                PN+V+ ++ +     S+G    GK+ H   +K       +D T +  V N LI+M
Sbjct: 360 GCRCRPNVVT-LMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDM 418

Query: 403 YSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEM-KLEG-VEPT 458
           Y+KC  LE +  +F  + P  R+ V+W  MI  +A+HG+   AL+L+ EM K++  + P 
Sbjct: 419 YAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPN 478

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSF 517
           D T   +L AC+ +  +  G +    +    RI       A C++DM  ++G +  A+  
Sbjct: 479 DFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVV 538

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
            + M  K + + W +LL    +HG SE
Sbjct: 539 FDSMS-KRNAVSWTSLLTGYGMHGRSE 564


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 312/564 (55%), Gaps = 7/564 (1%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + V+ N+LL  Y K   +  A ++F +MP RD++++N M+ G  R G        F    
Sbjct: 167 SVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELFAAMR 226

Query: 148 ELGFYQLDQASFT---IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             G   +D + FT   ++  A    +L L  + IH L         V V NAL+  Y KC
Sbjct: 227 REG---VDTSHFTFSSLLTVATGMVDLHL-GRQIHGLFVRANPSCNVFVNNALLDFYSKC 282

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            S    +++F EM  R+ +++  +IS    N+     L+LF  M     +  +L Y S +
Sbjct: 283 DSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLL 342

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
                L  +  GRQIH  L    L  +  + +AL+DMYSKCG ++ A  IF +  +   +
Sbjct: 343 SVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDKTAI 402

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T ++ G  QNG  EEA+QLF  M +AG+  D    S+++        +G+G+Q+H+ +
Sbjct: 403 SWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLHAYL 462

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            KS    + F  + L++MY+KCG L+++I+ F+ M  +NS++WN++I+A+A++G    A+
Sbjct: 463 TKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAKNAI 522

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            +++ M   G+ P  VTFLS+L AC H GL  + M++   M   + +SP  EHY+CV+D 
Sbjct: 523 RMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSCVIDT 582

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG   + +  I+ MP + D ++W ++L +C I+G+ ++   AAEKLF   P     Y
Sbjct: 583 LGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMVPTDATAY 642

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           ++++NIY+ +G W+  A+  K M++ GV KE+G SW+EI+++++ F  +D  +P  D I 
Sbjct: 643 VILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQKIYMFSSNDHTNPMIDEIK 702

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L  L   M  +GY P+    LH
Sbjct: 703 KELERLYEEMDKQGYEPDTSCALH 726



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 215/429 (50%), Gaps = 11/429 (2%)

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS--ACDRSELSLVS 175
           R+  +W  M+     +G        F+  L  G    D  + T +L+   CD   L    
Sbjct: 100 RNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVLNVPGCDVGTL---- 155

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
              H +V   G+   V V N L+ +Y K G  ++ R+VF EM  R+ IT+ A+I G  + 
Sbjct: 156 ---HPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQ 212

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             + E L+LF  M    ++ +  T+ S +   +G+  L  GRQIHG+  +     ++ + 
Sbjct: 213 GRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVN 272

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +AL+D YSKC S+ D  Q+F+   E D VS  V++   + N     A+QLF  M   G +
Sbjct: 273 NALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFD 332

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
                 +++L V G    + +G+QIH+ +I    T   FV N LI+MYSKCG L+ +  +
Sbjct: 333 RRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTI 392

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F+  + + ++SW ++I    ++G   +AL+L+ +M+  G+ P   T  S++ + S + ++
Sbjct: 393 FAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVI 452

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G +    +T+   + P     + ++DM  + G L EA      MP K + + W A++ 
Sbjct: 453 GIGRQLHAYLTKSGHM-PSVFSGSALLDMYAKCGCLDEAIRTFNEMPEK-NSITWNAVIS 510

Query: 536 ACSIHGDSE 544
           A + +G ++
Sbjct: 511 AYAQYGQAK 519



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 207/431 (48%), Gaps = 25/431 (5%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           ++   S LL+++      HLG  +H  F++           N      + N+LL FY KC
Sbjct: 233 SHFTFSSLLTVATGMVDLHLGRQIHGLFVRA----------NPSCNVFVNNALLDFYSKC 282

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ--LDQASFT 160
           D + +  +LFD+M  RD VS+N M+S    N    M    F+    LGF +  L  AS  
Sbjct: 283 DSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASLL 342

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +  A    +   + + IH  + L G   E  VGNALI  Y KCG   + + +F     +
Sbjct: 343 SVAGALPHIK---IGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIFAYKSDK 399

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
             I+WTA+I+G VQN   EE L+LF  M    ++P+  T  S + + S L  +  GRQ+H
Sbjct: 400 TAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIGRQLH 459

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
             L K      +   SAL+DMY+KCG +++A + F    E + ++   ++  +AQ G  +
Sbjct: 460 AYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQAK 519

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--IIKSDFTSNPFVNN- 397
            A+++F  M+  G+  DP    +VL   G +   GL ++      +++  ++ +P+  + 
Sbjct: 520 NAIRMFDSMLHCGLCPDPVTFLSVLAACGHN---GLAEECMKYFDLMRYYYSMSPWKEHY 576

Query: 398 -GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
             +I+   + G  +   KV   M    + + W+S++ +   +GN  + L      KL  +
Sbjct: 577 SCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGN--QDLATVAAEKLFTM 634

Query: 456 EPTDVTFLSLL 466
            PTD T   +L
Sbjct: 635 VPTDATAYVIL 645


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 280/495 (56%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   +L  C +    LV K  H L    G   +    N LI  Y KCG +   R+V
Sbjct: 54  IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRV 113

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M VR++I+W  +I+G   N+   E LKLF +MH         T  S++ AC+   A+
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAI 173

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            E +Q+H I  KLAL S   + +A +D+Y+KC  ++DA  +FE   E   V+ + +  GF
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QNG  EE + LF    + G+++    VS++L        +  G Q+H++I+K  F  N 
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNL 293

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV   L+++Y+KCG +E S +VF+ M  +N V WN+MIA+F+RH + ++A+ L+E+M+  
Sbjct: 294 FVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQV 353

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+ P +VT+LS+L ACSH GLV +G  +   +       P   HY+C+VD++GR+G   E
Sbjct: 354 GIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDE 413

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   +++MP +P   +W +LLG+  IH +  + + AAE+LF  +P++   ++L++N+Y+ 
Sbjct: 414 AWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAA 473

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           SG W+    A K +++ G  KE G SWIE + ++H FV  ++ HP    ++  L E+   
Sbjct: 474 SGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHE 533

Query: 634 MIDEGYVPNKRFILH 648
           M    +  N +  LH
Sbjct: 534 MRKISHRANTQCDLH 548



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 190/399 (47%), Gaps = 21/399 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  LL + AK     +G S H   I           + +   TV  N L++ Y KC Q  
Sbjct: 59  LHELLQLCAKRRSLLVGKSCHGLAIH----------FGLVTDTVTCNILINLYTKCGQND 108

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD M +R  +SWNTM++G+  N E       F R    G  Q+ + + +  L AC
Sbjct: 109 CARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG-TQMTEFTLSSTLCAC 167

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                 +  K +H +      +    VG A +  Y KC        VF  M  +  +TW+
Sbjct: 168 AAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWS 227

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++ +G VQN L+EE L LF       +     T  S +  C+ L  + EG Q+H ++ K 
Sbjct: 228 SLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKH 287

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
               +L + ++L+D+Y+KCG +E ++++F   EE + V    ++  F+++    EAM LF
Sbjct: 288 GFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILF 347

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFV--NNGLIN 401
            KM + G  I PN V+  L +    +  GL   G+   +L++ SD T+ P V   + +++
Sbjct: 348 EKMQQVG--IFPNEVT-YLSILSACSHTGLVEEGRHYFNLLL-SDRTAEPNVLHYSCMVD 403

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           +  + G  +++ K+  +M    + S W S++ +   H N
Sbjct: 404 VLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKN 442


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/559 (32%), Positives = 315/559 (56%), Gaps = 3/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y +C    +A ++F  M   + ++W+ +++ F  +G       +F+   + G
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEG 357

Query: 151 FYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
               ++ +F  +L+     S L  +S+ IH L+   G ++  T+ NAL+  Y +C S   
Sbjct: 358 ILP-NRVTFISLLNGFTTPSGLEELSR-IHLLITEHGLDDTTTMRNALVNVYGRCESPDD 415

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF ++ + N+I+W ++I   VQ + +++ L+LF  M    I P+ + +++ + AC+ 
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTI 475

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                  + +H  + +  L     ++++L++MY+K G ++ A  I +  +E    +  V+
Sbjct: 476 GSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVL 535

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+A +G   EA++ + K+    I +D     +VL      TSL  GK IHS  ++   
Sbjct: 536 INGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGL 595

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  V N L NMYSKCG +E++ ++F  M  R++VSWN M+ A+A+HG   + L+L  +
Sbjct: 596 DSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK 655

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ EGV+   +TF+S+L +CSH GL+ +G ++  S+     I  + EHY C+VD++GRAG
Sbjct: 656 MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAG 715

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA  +I +MP++P ++ W +LLGAC +  D + GK AA KL    P + +  ++++N
Sbjct: 716 KLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSN 775

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IYS  G WK  AK  + M    V K  GIS I+++ +VH F V D  HP+A  I+  + E
Sbjct: 776 IYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEE 835

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M + GYVP+ + +LH
Sbjct: 836 LCFAMREAGYVPDTKMVLH 854



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 233/455 (51%), Gaps = 9/455 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL---RNGEFDMGFGFFKRSLEL 149
            +L++ Y KC  + +A K+FD MP R   +WN+M+S +    R+GE    F  F+R  + 
Sbjct: 199 TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE---AFFIFQRMQQE 255

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D+ +F  IL AC   E     K +   +    +E ++ VG ALIT Y +C S   
Sbjct: 256 G-ERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPED 314

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VFG M+  N+ITW+A+I+    +    E L+ F  M    I PN +T++S +   + 
Sbjct: 315 AAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTT 374

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L E  +IH ++ +  L     + +AL+++Y +C S +DA  +F+  E  + +S   +
Sbjct: 375 PSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSM 434

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  + Q    ++A+QLF  M + GI+ D      +LG   + +     K +H  + +S  
Sbjct: 435 IGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGL 494

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +P V   L+NMY+K G+L+ +  +   M  +   +WN +I  +A HG   +ALE Y++
Sbjct: 495 GGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQK 554

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           ++LE +    VTF+S+L+AC+    + +G     +  E    S      A + +M  + G
Sbjct: 555 LQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNA-LTNMYSKCG 613

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            +  AR   + MP++  V  W  +L A + HG+SE
Sbjct: 614 SMENARRIFDSMPIRSAV-SWNGMLQAYAQHGESE 647



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 253/511 (49%), Gaps = 9/511 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF-LRNGEFDMGFGFFKRSL 147
           T++  +LL+ Y KC  + +A  +F++M  ++ V+WN M+  + L+   + +    F R L
Sbjct: 93  TLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRML 152

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G  + +  +F  +L++    +     K IH  V    +  +V V  AL+ +Y KCGS 
Sbjct: 153 LEGV-KANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSL 211

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  RKVF  M  R+V TW ++IS    ++   E   +F +M       + +T+LS + AC
Sbjct: 212 TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
              + L  G+ +   + + + + DL + +AL+ MY++C S EDA Q+F   ++ + ++ +
Sbjct: 272 VNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWS 331

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK--QIHSLII 385
            I+  FA +G   EA++ F  M + GI   PN V+ +  + G  T  GL +  +IH LI 
Sbjct: 332 AIITAFADHGHCGEALRYFRMMQQEGIL--PNRVTFISLLNGFTTPSGLEELSRIHLLIT 389

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +        + N L+N+Y +C   +D+  VF ++   N +SWNSMI  + +      AL+
Sbjct: 390 EHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQ 449

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M+ +G++P  V F+++L AC+ +G   +  + +    E   +         +V+M 
Sbjct: 450 LFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMY 508

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-AQPDSPAPY 564
            +AG L  A   ++ M  +  +  W  L+   ++HG S     A +KL L A P     +
Sbjct: 509 AKAGELDVAEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTF 567

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           I + N  + S    E         E G+D +
Sbjct: 568 ISVLNACTSSTSLAEGKMIHSNAVECGLDSD 598



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 224/454 (49%), Gaps = 15/454 (3%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y +C  + +AV  F  +  R+ VSWN M+S +     F      F   L  G    +  
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAP-NAI 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +   +L++C          ++H L    G+ +   V  AL+  Y KCG+    + VF EM
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 218 RVRNVITWTAVISGL-VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
             +NV+TW A++    +Q   ++  ++LF +M L  +  N +T+L+ + +     AL +G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           + IH  + +     D+ + +AL++ Y+KCGS+ DA ++F+        +   ++  ++ +
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
               EA  +F +M + G   D     ++L       +L  GK +   I ++ F  + FV 
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG 299

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             LI MY++C   ED+ +VF RM   N ++W+++I AFA HG+  +AL  +  M+ EG+ 
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 359

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKS----MTEVHRISPRAEHYACVVDMVGRAGLLI 512
           P  VTF+SLL+  +       G+E L      +TE H +         +V++ GR     
Sbjct: 360 PNRVTFISLLNGFT----TPSGLEELSRIHLLITE-HGLDDTTTMRNALVNVYGRCESPD 414

Query: 513 EARSFIERMPVKPDVLVWQALLG---ACSIHGDS 543
           +AR+  +++ + P+++ W +++G    C  H D+
Sbjct: 415 DARTVFDQLEL-PNLISWNSMIGIYVQCERHDDA 447



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 174/353 (49%), Gaps = 3/353 (0%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           + + + T + N+L++ Y +C+   +A  +FD + + + +SWN+M+  +++    D     
Sbjct: 391 HGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQL 450

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F R+++    Q D+ +F  IL AC         K++H  V   G      V  +L+  Y 
Sbjct: 451 F-RTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYA 509

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           K G       +  EM  + +  W  +I+G   +    E L+ + K+ L  I  + +T++S
Sbjct: 510 KAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFIS 569

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+   +L EG+ IH    +  L SD+ +++AL +MYSKCGS+E+A +IF+      
Sbjct: 570 VLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRS 629

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-IH 381
            VS   +L  +AQ+G  EE ++L  KM + G++++     +VL        +  G Q  H
Sbjct: 630 AVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFH 689

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAA 433
           SL               L+++  + G L+++ K  S+M      V+W S++ A
Sbjct: 690 SLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGA 742



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 4/183 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N+L + Y KC  M NA ++FD MP+R  VSWN M+  + ++GE +       R +E 
Sbjct: 600 IVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI-RKMEQ 658

Query: 150 GFYQLDQASFTIILSACDRSEL-SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +L+  +F  +LS+C  + L +   +  H L +  G E +      L+    + G   
Sbjct: 659 EGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQ 718

Query: 209 SGRKVFGEMRVR-NVITWTAVISGL-VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
              K   +M +   ++TW +++    VQ  L    L     + L   N ++   LS++ +
Sbjct: 719 EAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYS 778

Query: 267 CSG 269
             G
Sbjct: 779 ERG 781


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 200/616 (32%), Positives = 327/616 (53%), Gaps = 36/616 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L   A      LG  LHA  +K+    D           ++  + L  Y KCD M++A 
Sbjct: 245 VLRSCAALSELRLGGQLHAHALKSDFAADG----------IVRTATLDMYAKCDNMQDAQ 294

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD     +  S+N M++G+ +          F R +  G    D+ S + +  AC   
Sbjct: 295 ILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALV 353

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           +       I+ L        +V V NA I  Y KC + +   +VF EMR R+ ++W A+I
Sbjct: 354 KGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAII 413

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +   QN    E L LFV M    I P+  T+ S + AC+G  +L  G +IH  + K  + 
Sbjct: 414 AAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMA 472

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFE----------FAEELDG----------VSMTVI 329
           S+  +  +L+DMYSKCG +E+A +I              EEL+           VS   I
Sbjct: 473 SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSI 532

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+      E+A  LF +M++ GI  D    + VL       S GLGKQIH+ +IK + 
Sbjct: 533 ISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL 592

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ ++++ L++MYSKCGDL DS  +F +   R+ V+WN+MI  +A HG G +A++L+E 
Sbjct: 593 QSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFER 652

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M LE ++P  VTF+S+L AC+H+GL++KG+E+   M   + + P+  HY+ +VD++G++G
Sbjct: 653 MILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 712

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQPDSPAPYILMA 568
            +  A   I  MP + D ++W+ LLG C+IH ++ E+ + A   L    P   + Y L++
Sbjct: 713 KVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLS 772

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH---G 625
           N+Y+ +G W++ +   + M+   + KE G SW+E++ ++H F+V DK HP+ + I+   G
Sbjct: 773 NVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELG 832

Query: 626 VLAELLRLMIDEGYVP 641
           ++   ++   D  +VP
Sbjct: 833 LIYSEMKPFDDSSFVP 848



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 247/499 (49%), Gaps = 34/499 (6%)

Query: 55  AKEGHFHLGPSLHASFIKT-FEP------------------------FDNQNVYNVPNAT 89
           AK+G   LG   HA  I + F P                        FD   + +V    
Sbjct: 17  AKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDV---- 72

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN +++ Y K + M  A   F+ MP+RD VSWN+M+SG+L+NGE       F      
Sbjct: 73  VSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRA 132

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  +F IIL  C   E + +   IH +V   G + +V   +AL+  Y K      
Sbjct: 133 G-TEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVE 191

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF  +  +N ++W+A+I+G VQN L    LK F +M       +   Y S + +C+ 
Sbjct: 192 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 251

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G Q+H    K    +D  + +A +DMY+KC +++DA  +F+ +E L+  S   +
Sbjct: 252 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAM 311

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G++Q     +A+ LF +++ +G+  D   +S V     +   L  G QI+ L IKS  
Sbjct: 312 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSL 371

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           + +  V N  I+MY KC  L ++ +VF  M  R++VSWN++IAA  ++G G++ L L+  
Sbjct: 372 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 431

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRA 508
           M    +EP + TF S+L AC+  G +  GME   S+ +    S  +    C ++DM  + 
Sbjct: 432 MLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSS--VGCSLIDMYSKC 488

Query: 509 GLLIEARSFIERMPVKPDV 527
           G++ EA     R   + +V
Sbjct: 489 GMIEEAEKIHSRFFQRTNV 507



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 201/440 (45%), Gaps = 48/440 (10%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI---- 229
           + K  H  + L G+     V N L+  Y       S   VF  M +R+V++W  +I    
Sbjct: 24  LGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYA 83

Query: 230 ---------------------------SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
                                      SG +QN    + +++FV M       +  T+  
Sbjct: 84  KSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAI 143

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            +  CS L+    G QIHG++ ++   +D+   SAL+DMY+K     ++ ++F+   E +
Sbjct: 144 ILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKN 203

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS + I+ G  QN     A++ F +M K    +  ++ ++VL      + L LG Q+H+
Sbjct: 204 SVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHA 263

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             +KSDF ++  V    ++MY+KC +++D+  +F +    N  S+N+MI  +++  +GFK
Sbjct: 264 HALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFK 323

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHY 498
           AL L+  +   G+   +++   +  AC+ V  +++G++     +KS   +      A   
Sbjct: 324 ALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANA--- 380

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
              +DM G+   L EA    + M  + D + W A++ A   +G      Y    LF++  
Sbjct: 381 --AIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNGKG----YETLFLFVSML 433

Query: 559 DS---PAPYILMANIYSCSG 575
            S   P  +   + + +C+G
Sbjct: 434 RSRIEPDEFTFGSVLKACTG 453



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 49/204 (24%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L LGKQ H+ +I S F    FV N L+ +Y+   D   +  VF RM  R+ VSWN MI 
Sbjct: 21  ALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMIN 80

Query: 433 AFAR-------------------------------HGNGFKALELYEEMKLEGVEPTDVT 461
            +A+                               +G   K++E++ +M   G E    T
Sbjct: 81  GYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRT 140

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL---IEARSFI 518
           F  +L  CS +   + GM       ++H +  R     C  D+V  + LL    + + F+
Sbjct: 141 FAIILKVCSCLEDTSLGM-------QIHGVVVRV---GCDTDVVAASALLDMYAKGKRFV 190

Query: 519 ERMPV-----KPDVLVWQALLGAC 537
           E + V     + + + W A++  C
Sbjct: 191 ESLRVFQGIPEKNSVSWSAIIAGC 214


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 305/569 (53%), Gaps = 21/569 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y KC   R+A  +F  MP RD V+WN M++G+  +G++            L 
Sbjct: 166 VSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIAC------LL 219

Query: 151 FYQLDQASFTIILSA-----CDRSELSLVSKMIHCL-VYLCG---YEEEVTVGNALITSY 201
             Q D A     L A          LS   + +H   V  C    +++ V VG AL+  Y
Sbjct: 220 LMQDDHAPNASTLVALLPLLAQHGALS-QGRAVHAYSVRACSLHDHKDGVLVGTALLDMY 278

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSL 258
            KCG      +VF  M VRN +TW+A++ G V      E   LF  M    L  ++P S+
Sbjct: 279 AKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSV 338

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
              S++ AC+ L  LC G+Q+H +L K  L +DL   ++L+ MY+K G ++ A  +F+  
Sbjct: 339 A--SALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM 396

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D VS + ++ G+ QNG  +EA ++F KM    ++ D   + +++       +L  GK
Sbjct: 397 VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGK 456

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
             H  +I     S   + N LI+MY+KCG ++ S ++F  M  R+ VSWN+MIA +  HG
Sbjct: 457 CGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHG 516

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            G +A  L+ +MK +  EP DVTF+ L+ ACSH GLV +G  +   M   + I+PR EHY
Sbjct: 517 LGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHY 576

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
             +VD++ R G L EA  FI+ MP+K DV VW ALLGAC +H + ++GK  +  +    P
Sbjct: 577 IGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGP 636

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
           +    ++L++NI+S +GR+ E A+     KE G  K  G SWIEI   +H+F+  D+ H 
Sbjct: 637 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHA 696

Query: 619 QADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           Q+  I+  L  +L  +   GY  +  F+L
Sbjct: 697 QSSEIYQELDNILVDINKLGYRADTSFVL 725



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 232/483 (48%), Gaps = 20/483 (4%)

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C  +  A  LFD +P      +N ++  +   G   +    ++        Q +  +F  
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGP-ALALRLYRSLRRRRLPQPNNYTFPF 134

Query: 162 ILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           +L AC  + L L S + +HC     G   ++ V  AL+  Y KC S      VF  M  R
Sbjct: 135 VLKACS-ALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR 193

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQALCEGRQI 279
           +V+ W A+++G   +  Y + +   + M      N ++L  L  ++A  G  AL +GR +
Sbjct: 194 DVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHG--ALSQGRAV 251

Query: 280 HGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           H    +     D    + + +AL+DMY+KCG +  A ++FE     + V+ + ++ GF  
Sbjct: 252 HAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVL 311

Query: 336 NGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            G   EA  LF  M+  G+  + P  V++ L      + L LGKQ+H+L+ KS   ++  
Sbjct: 312 CGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLT 371

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
             N L++MY+K G ++ +  +F +M  +++VS++++++ + ++G   +A  ++ +M+   
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN 431

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           V+P   T +SL+ ACSH+  +  G     S+  V  I+        ++DM  + G +  +
Sbjct: 432 VQPDVATMVSLIPACSHLAALQHGKCGHGSVI-VRGIASETSICNALIDMYAKCGRIDLS 490

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL---AQPDSPAPYILMANIY 571
           R   + MP + D++ W  ++    IHG   +GK  A  LFL    Q   P     +  I 
Sbjct: 491 RQIFDVMPAR-DIVSWNTMIAGYGIHG---LGK-EATALFLDMKHQACEPDDVTFICLIS 545

Query: 572 SCS 574
           +CS
Sbjct: 546 ACS 548



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 205/419 (48%), Gaps = 13/419 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +  LL + A+ G    G ++HA  ++     D+++        ++  +LL  Y KC
Sbjct: 228 NASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKD------GVLVGTALLDMYAKC 281

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A ++F+ M +R+ V+W+ +V GF+  G     F  FK  L  G   L   S    
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA 341

Query: 163 LSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           L AC + S+L L  K +H L+   G   ++T GN+L++ Y K G       +F +M V++
Sbjct: 342 LRACANLSDLCL-GKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKD 400

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
            ++++A++SG VQN   +E  ++F KM    + P+  T +S + ACS L AL  G+  HG
Sbjct: 401 TVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHG 460

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +    + S+  I +AL+DMY+KCG ++ + QIF+     D VS   ++ G+  +G  +E
Sbjct: 461 SVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKE 520

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-IHSLIIKSDFTSNPFVNNGLI 400
           A  LF+ M     E D      ++        +  GK+  H +  K   T       G++
Sbjct: 521 ATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMV 580

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN---GFKALELYEEMKLEGV 455
           ++ ++ G L+++ +    M  +  V  W +++ A   H N   G +   + +++  EG 
Sbjct: 581 DLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGT 639


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/440 (39%), Positives = 270/440 (61%), Gaps = 4/440 (0%)

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RKVF  M  R++++W  VISG  QN ++E+ L +  +M    + P+S T  S +   +  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +G++IHG   +    +D+ I S+L+DMY+KC  V+D+ ++F    + DG+S   I+
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G  QNG  +E ++ F +M+ A  +I PN VS  +++      T+L LGKQ+H  II+S 
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIA--KIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 327

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  N F+ + L++MY+KCG++  +  +F +M   + VSW +MI  +A HG+ + A+ L++
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 387

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M++EGV+P  V F+++L ACSH GLV++  ++  SMT+ +RI P  EHYA V D++GR 
Sbjct: 388 RMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRV 447

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  FI  M ++P   VW  LL AC +H + E+ +  ++KLF   P +   Y+L++
Sbjct: 448 GRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLS 507

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS +GRWK+  K    M++ G+ K+   SWIEI+ +VH+FV  DK HP  D I+  L 
Sbjct: 508 NIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALK 567

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            LL  M  EGYV +   +LH
Sbjct: 568 VLLEQMEREGYVLDTTEVLH 587



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/367 (32%), Positives = 196/367 (53%), Gaps = 21/367 (5%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACD 167
           K+F+ MP RD VSWNT++SG  +NG  +      +   E+G   L   SFT+  +L    
Sbjct: 151 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVR---EMGNADLRPDSFTLSSVLPIFA 207

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                L  K IH      GY+ +V +G++LI  Y KC       +VF  +   + I+W +
Sbjct: 208 EYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNS 267

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I+G VQN +++EGLK F +M +  I PN +++ S + AC+ L  L  G+Q+HG + +  
Sbjct: 268 IIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR 327

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
              ++ I SAL+DMY+KCG++  A  IF+  E  D VS T +++G+A +G   +A+ LF 
Sbjct: 328 FDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFK 387

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMY 403
           +M   G++  PN V A + V    +  GL  +       +  D+   P + +   + ++ 
Sbjct: 388 RMEVEGVK--PNYV-AFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 444

Query: 404 SKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD 459
            + G LE++ +  S M   P  SV W++++AA   H N    +EL E++  KL  V+P +
Sbjct: 445 GRVGRLEEAYEFISDMHIEPTGSV-WSTLLAACRVHKN----IELAEKVSKKLFTVDPQN 499

Query: 460 VTFLSLL 466
           +    LL
Sbjct: 500 IGAYVLL 506



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 168/341 (49%), Gaps = 17/341 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L I A+  +   G  +H   I+        N Y+      I +SL+  Y KC ++ 
Sbjct: 199 LSSVLPIFAEYVNLLKGKEIHGYAIR--------NGYDAD--VFIGSSLIDMYAKCTRVD 248

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           ++ ++F  +P  D +SWN++++G ++NG FD G  FF++ L +   + +  SF+ I+ AC
Sbjct: 249 DSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQML-IAKIKPNHVSFSSIMPAC 307

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  + K +H  +    ++  V + +AL+  Y KCG+  + R +F +M + ++++WT
Sbjct: 308 AHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWT 367

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWK 285
           A+I G   +    + + LF +M +  + PN + +++ + ACS    + E  +  + +   
Sbjct: 368 AMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQD 427

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQ-IFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
             +   L   +A+ D+  + G +E+A++ I +   E  G   + +L     +    + ++
Sbjct: 428 YRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH----KNIE 483

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
           L  K+ K    +DP  + A + +  + ++ G  K    L I
Sbjct: 484 LAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRI 524



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+V  S ++   A     HLG  LH   I++   FD  NV+       I ++L+  Y KC
Sbjct: 296 NHVSFSSIMPACAHLTTLHLGKQLHGYIIRS--RFDG-NVF-------IASALVDMYAKC 345

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R A  +FD M + D VSW  M+ G+  +G        FKR +E+   + +  +F  +
Sbjct: 346 GNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKR-MEVEGVKPNYVAFMAV 404

Query: 163 LSACDRSEL 171
           L+AC  + L
Sbjct: 405 LTACSHAGL 413



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 137/317 (43%), Gaps = 46/317 (14%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW-Q 313
           P+   + S + +C+ ++ L  G  +HG + +L +  DL   +ALM+MYSK  S+E+   Q
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGVQ 67

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
            F  ++ L G+      +G   N  +               E+D         V G+D +
Sbjct: 68  RFCDSKMLGGIPEPR-EIGKCSNSHDLPC------------ELDER-------VAGIDQN 107

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-------CGDLEDSIKVFSRMAPRNSVS 426
             L  Q+ +++ + +     F      ++YSK        G L    KVF  M  R+ VS
Sbjct: 108 GDL-NQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR---KVFEMMPKRDIVS 163

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN++I+  A++G    AL +  EM    + P   T  S+L   +    + KG        
Sbjct: 164 WNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKG-------K 216

Query: 487 EVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           E+H  + R  + A V      +DM  +   + ++      +P + D + W +++  C  +
Sbjct: 217 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSIIAGCVQN 275

Query: 541 GDSEMGKYAAEKLFLAQ 557
           G  + G    +++ +A+
Sbjct: 276 GMFDEGLKFFQQMLIAK 292


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 194/605 (32%), Positives = 321/605 (53%), Gaps = 10/605 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           +D+ +LL +SA   +  +G ++H+  I T    +N        + +  NSL++FY K +Q
Sbjct: 30  LDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATEN--------SIIEVNSLINFYAKVNQ 81

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +  A  LFD MP R+ VSW+ +++G+L NG         K  +  G    ++    I +S
Sbjct: 82  VSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAIS 141

Query: 165 AC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           +C DR  +    +  H L+   G+     V NAL++ Y KC        V+ E+ V +++
Sbjct: 142 SCCDRGRVE-EGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIV 200

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            + +++S LV+N    EGL++   M    +  + +T++++   C+ L+ L  G  +HG +
Sbjct: 201 AYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKM 260

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
               ++ D  + SA+++MY KCG    A  +F+  +  + V  T ++    QNG  EEA+
Sbjct: 261 LTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEAL 320

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF KM +  ++ +    + +L      ++   G  +H    KS F  +  V N LINMY
Sbjct: 321 NLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMY 380

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +K GD+E + KVFS M  R+ ++WN+MI  F+ HG G KAL ++++M      P  VTF 
Sbjct: 381 AKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFT 440

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L AC H+GLV +G  +L  + +   + P  EHY C+V ++ + G L EAR+F+   PV
Sbjct: 441 GVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPV 500

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           K DV+ W+ LL AC +H +  +G++ AE +    P+    Y L++NIY+   RW    K 
Sbjct: 501 KWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKV 560

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            K M++  + KE G+SWIEI    H F  +D  HP     +  + ELL ++   GY P+ 
Sbjct: 561 RKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDI 620

Query: 644 RFILH 648
             +LH
Sbjct: 621 GAVLH 625


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 302/558 (54%), Gaps = 1/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + + L+  Y  C  + +A  +F+ +  +D V W  MVS +  N   +  F  F + + + 
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSK-MRVS 257

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  + T +L A       ++ K IH        + E  VG AL+  Y KCG     
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R  F  +   +VI  + +IS   Q+   E+  +LF+++    + PN  +  S + AC+ +
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+QIH    K+  +SDL + +ALMD Y+KC  ++ + +IF    + + VS   I+
Sbjct: 378 VQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV 437

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VGF+Q+G  EEA+ +F +M  A +       S+VL       S+    QIH  I KS F 
Sbjct: 438 VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN 497

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  + N LI+ Y+KCG + D++KVF  +  R+ +SWN++I+ +A HG    ALEL++ M
Sbjct: 498 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRM 557

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               VE  D+TF++LL  CS  GLVN G+    SM   H I P  EHY C+V ++GRAG 
Sbjct: 558 NKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGR 617

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI  +P  P  +VW+ALL +C IH +  +G+++AEK+   +P     Y+L++N+
Sbjct: 618 LNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNM 677

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G   + A   K M+ +GV K  G+SW+EI+ ++H+F V    HP    I+ +L  L
Sbjct: 678 YAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWL 737

Query: 631 LRLMIDEGYVPNKRFILH 648
                 EGY+P+   +LH
Sbjct: 738 NLKTSREGYIPDINVVLH 755



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 239/457 (52%), Gaps = 15/457 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y K   + +A +LFD MP R+ VS+ T+V    + G+F+     F+R L    +
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR-LRWEGH 158

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++Q   T +L      + + ++  +H   +  G++    VG+ LI +Y  C   S    
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH 218

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  ++ + WTA++S   +N   E   ++F KM +    PN     S + A   L +
Sbjct: 219 VFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPS 278

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+ IHG   K    ++  +  AL+DMY+KCG ++DA   FE     D + ++ ++  
Sbjct: 279 VVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISR 338

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ+   E+A +LF++++++ +  +   +S+VL        L  GKQIH+  IK    S+
Sbjct: 339 YAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESD 398

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV N L++ Y+KC D++ S+K+FS +   N VSWN+++  F++ G G +AL ++ EM+ 
Sbjct: 399 LFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQA 458

Query: 453 EGVEPTDVTFLSLLHACS------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             +  T VT+ S+L AC+      H G ++  +E  KS      +   +     ++D   
Sbjct: 459 AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGNS-----LIDTYA 511

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           + G + +A    + + ++ D++ W A++   ++HG +
Sbjct: 512 KCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQA 547



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 148/306 (48%), Gaps = 15/306 (4%)

Query: 276 GRQIHGILWKLAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           GR +HG + +     + DL   + L++MY K G +  A ++F+   E + VS   ++   
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQ G  E A  LF ++   G E++  +++ +L +     + GL   +HS   K     N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV +GLI+ YS C  + D+  VF+ +  +++V W +M++ ++ +     A  ++ +M++ 
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVS 257

Query: 454 GVEPTDVTFLSLLHA--CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           G +P      S+L A  C    ++ KG+    ++  ++   P       ++DM  + G +
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGC-AIKTLNDTEPHVG--GALLDMYAKCGDI 314

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMA 568
            +AR   E +P   DV++   ++   S +  S   + A E LFL    S   P  Y L +
Sbjct: 315 KDARLAFEMIPYD-DVILLSFMI---SRYAQSNQNEQAFE-LFLRLMRSSVLPNEYSLSS 369

Query: 569 NIYSCS 574
            + +C+
Sbjct: 370 VLQACT 375



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N TVI NSL+  Y KC  +R+A+K+F  +  RD +SWN ++SG+  +G+       F R 
Sbjct: 498 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR- 556

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           +     + +  +F  +LS C  + L
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGL 581


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 314/551 (56%), Gaps = 7/551 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y+KC  + NA  LFD MP RD +SWN M+SG+  NG    G   F    EL 
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS 294

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + T + SAC+  +   + + +H  V    +  ++++ N+LI  Y   G     
Sbjct: 295 V-DPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  M  ++V++WTA+I+ LV ++L  + ++ +  M L  I P+ +T +S + AC+ +
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H I  K  L S + + ++L+DMYSKC  V++A ++F      + VS T ++
Sbjct: 414 GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLI 473

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +G   N    EA+  F +M ++   + PN V+  +VL       +L  GK+IH+  +++ 
Sbjct: 474 LGLRINNRSFEALLFFRQMKES---MKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              + F+ N +++MY +CG    ++  F+    ++  +WN ++  +A+ G    A+EL++
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M    + P ++TF+SLL ACS  G+V +G+E+   M   + ++P  +HYACVVD++GRA
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FI+ MP++PD  +W ALL AC IH + E+G+ AA+++F     S   YIL+ 
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC 709

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+  G W + +K    M+E G+  + G SW+EI+ +VH+F+  D  H Q+  I+GVL 
Sbjct: 710 NLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLD 769

Query: 629 ELLRLMIDEGY 639
                M + G+
Sbjct: 770 GFCSKMKENGF 780



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 235/466 (50%), Gaps = 13/466 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS +++   + +A  +F  M  RD  SWN +V G+ + G FD     + R L     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML-WAEI 194

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L  C         K IH  V   G+E +V VGNALIT Y KCG  S+ R 
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +M  R+ I+W A+ISG  +N    EGL+LF  M    ++P+ +T  +   AC  L  
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + K     D+ + ++L+ MYS  G +E+A  +F   E  D VS T ++  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
              +    +A++ +  M   GI  D   + +VL        L LG ++H + IK+   S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+N LI+MYSKC  ++++++VF  ++ +N VSW S+I     +   F+AL  + +MK 
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK- 493

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
           E ++P  VT +S+L AC+ +G + +G E     L++        P A     ++DM  R 
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRC 548

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           G  + A +       K DV  W  LL   +  G +++     +K+ 
Sbjct: 549 GRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKML 592



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 215/406 (52%), Gaps = 21/406 (5%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GNAL++ + + G+      VFG+M  R+V +W  ++ G  +   ++E L L+ +M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             I PN  T+ S +  C+G+  +  G++IH  + +   +SD+ + +AL+ MY KCG + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+   + D +S   ++ G+ +NG   E ++LF  M +  ++ D   ++ V     +
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             +  LG+ +H  ++KS+F  +  +NN LI MYS  G LE++  VFSRM  ++ VSW +M
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMT 486
           IA+   H   FKA+E Y+ M+LEG+ P ++T +S+L AC+ +G ++ G+      +K+  
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             H I   +     ++DM  +   +  A      +  K +V+ W +L+    I+  S   
Sbjct: 432 VSHVIVSNS-----LIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRS--- 482

Query: 547 KYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            + A   F    +S  P    L++ + +C+     R  A+ R KE+
Sbjct: 483 -FEALLFFRQMKESMKPNSVTLISVLSACA-----RIGALMRGKEI 522



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 14/278 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L + + +  +LS  A  GH  LG  LH   IKT           + +  ++ NSL+  Y
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT----------GLVSHVIVSNSLIDMY 445

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + NA+++F ++  ++ VSW +++ G   N        FF++  E    + +  + 
Sbjct: 446 SKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTL 503

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +LSAC R    +  K IH      G   +  + NA++  Y +CG        F   + 
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK- 562

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++V  W  +++G  Q    +  ++LF KM    I+P+ +T++S + ACS    + EG + 
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEY 622

Query: 280 HGILW-KLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             I+  K  L  +L   + ++D+  + G ++DA+   +
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQ 660



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 2/198 (1%)

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E+AM+    M++  IE++ +   A+L +     +   G +++ L+  S       + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L++M+ + G+L D+  VF +M+ R+  SWN ++  +A+ G   +AL LY  M    + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P   TF S+L  C+ V  + +G E    +          +    ++ M  + G +  AR 
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNARM 254

Query: 517 FIERMPVKPDVLVWQALL 534
             ++MP K D + W A++
Sbjct: 255 LFDKMP-KRDRISWNAMI 271


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 301/543 (55%), Gaps = 18/543 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSLL+ Y+ C ++  A ++F+ M  R  VSWNTM+SG+ +NG  +     F   ++  
Sbjct: 221 VQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMD-A 279

Query: 151 FYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             + D A+    L +C    EL L  K +H LV     +E++ V NAL+  Y +CG    
Sbjct: 280 RVEPDSATIVSALPSCGHLKELELGIK-VHKLVQKNHLQEKIEVRNALVDMYSRCGGMDE 338

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF E + ++VITWT++I+G + N   +  L L   M L  + PN++T  S + AC+ 
Sbjct: 339 ASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACAS 398

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L +G+ +H  + +  L SD+ + +AL+DMY+KC +V  ++Q+F        V    +
Sbjct: 399 LCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNAL 458

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L G   N    EA+ LF  M+   +E +    ++V+  + +   L     +HS +++S F
Sbjct: 459 LSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGF 518

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELY 447
            S   V  GLI+MYSKCG L+ + K+F  +    ++ + W+ +IA +  HG+G  A+ L+
Sbjct: 519 ISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLF 578

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M   G++P ++TF S+LHACSH GLV+ G+   K M E +  SP   HY CVVD++GR
Sbjct: 579 NQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGR 638

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA   I+ MP + +  +W ALLGAC IH + E+G+ AAE+LF  +P+S   YIL+
Sbjct: 639 AGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAERLFELEPESTGNYILL 698

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           ANIY+  GRWK+              +   +      K++++FV D  MHP       + 
Sbjct: 699 ANIYAAVGRWKDA-------------ENHKLQLSPPPKEINTFVTDLNMHPILTKCRALK 745

Query: 628 AEL 630
           +EL
Sbjct: 746 SEL 748



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 230/461 (49%), Gaps = 4/461 (0%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFK 144
           PN   + + L   Y  C  +  A KLFDD+       WN ++  ++  G  FD     F 
Sbjct: 114 PNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFD-ALRVFD 172

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             +  G    D+ +F +++ AC    +  V  +IH    + G+   + V N+L+  Y  C
Sbjct: 173 SMICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNC 232

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R+VF  M  R+V++W  +ISG  QN   EE L +F  M    + P+S T +S++
Sbjct: 233 GKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSAL 292

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            +C  L+ L  G ++H ++ K  LQ  + + +AL+DMYS+CG +++A  +F   +E D +
Sbjct: 293 PSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVI 352

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           + T ++ G+  NG  + A+ L   M   G+  +   ++++L        L  GK +H+ +
Sbjct: 353 TWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWV 412

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           ++    S+  V   LI+MY+KC  +  S +VF++ + + +V WN++++    +    +A+
Sbjct: 413 MRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAV 472

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L++ M +E VE    TF S++ A + +  + + M     +     IS  A     ++DM
Sbjct: 473 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAV-ITGLIDM 531

Query: 505 VGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSE 544
             + G L  A    + +P K  D++VW  L+    +HG  E
Sbjct: 532 YSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGE 572


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 186/555 (33%), Positives = 298/555 (53%), Gaps = 6/555 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFD-----DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           ++L+  Y+KC  ++NA  +F+     ++  R+   WN M+ G++ N    +    F   L
Sbjct: 181 SALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEML 240

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           ELG    D ++  ++L  C +     V K IH L+   G +++V VG AL+  YFKCG  
Sbjct: 241 ELGI-SPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDP 299

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            +  ++F   +  N++ W +V+    QN    E L+ F +  L    P+ +  L+++ AC
Sbjct: 300 ETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRAC 359

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L     G  IHG   K+   SD+ +  AL+D Y KCG +E A Q+F      D VS  
Sbjct: 360 SFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWN 419

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ GFAQN   +EA++ F  M    I+ +   ++ +L V    + + L K++H  +++ 
Sbjct: 420 ALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRH 479

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F +N  VNN LI+ Y+KCGD+  S  VF ++  RN V+WNS++  F  HG   +    +
Sbjct: 480 WFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATF 539

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           E+MK   ++P   TF SLL +CSH G V+ G ++  SM E + + PR E Y C+VD++GR
Sbjct: 540 EKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGR 599

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L +A   I  MP  PD  +W +LL +C  HG++++ +  A  +F     S    +L+
Sbjct: 600 AGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLL 659

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           AN+Y  SG   E  +    +K+MG+ K+ G SWIE++  +H FV  D  H ++  I+  +
Sbjct: 660 ANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYATI 719

Query: 628 AELLRLMIDEGYVPN 642
             L   M   GYVP+
Sbjct: 720 ESLSLEMKRVGYVPH 734



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/476 (31%), Positives = 251/476 (52%), Gaps = 12/476 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL-ELGF 151
           NSLL  Y KC    NAV +F+ M  RD+VSWNTM+SGF ++G++      F+R + E G 
Sbjct: 78  NSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMVKECGG 137

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              ++ +    LS+C   +       IH  +   G + +  + +ALI  Y KCG   +  
Sbjct: 138 SYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAE 197

Query: 212 KVFGEMR-----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            VF  +R      RN+  W  +I G V N+     L+LFV+M    I+P+S T +  ++ 
Sbjct: 198 NVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVL 257

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           CS L  L  G+QIHG++  L L  D+ + +ALM+MY KCG  E + QIF+ ++  + V  
Sbjct: 258 CSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMW 317

Query: 327 TVILVGFAQNGFEEEAMQLFVK-MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             +++  AQNG+  EA++ F + M+  G   DP ++ A L      +    G  IH   I
Sbjct: 318 GSVMLNCAQNGYPNEALEFFSEFMLDCGFP-DPVILLAALRACSFLSLKPRGMAIHGFAI 376

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S+ FV   L++ Y KCGD+E + +VF  ++ R+ VSWN++I+ FA++    +AL+
Sbjct: 377 KMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALK 436

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            + +M+ + ++P  VT   +L  C+H+ ++    E    +   H     A     ++   
Sbjct: 437 AFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLR-HWFETNALVNNSLISAY 495

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPD 559
            + G +  +R+  E++PV+ +V  W ++L    +HG ++      EK+  A  +PD
Sbjct: 496 AKCGDIHSSRTVFEKLPVRNEV-TWNSILLGFGMHGRTDEMFATFEKMKEANIKPD 550



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 211/423 (49%), Gaps = 9/423 (2%)

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D    N M+     +G F+     +   +E GF   +   F  ++ A          K I
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQI 61

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  +   G+ +++ V N+L+  Y+KCG+  +   +F  M  R+ ++W  +ISG  Q+  Y
Sbjct: 62  HGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDY 121

Query: 239 EEGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            + L +F +M    G    N +  L+++ +C+ ++ L  G +IHG L K  + SD  + S
Sbjct: 122 VKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVS 181

Query: 297 ALMDMYSKCGSVEDAWQIFEFAE--ELDGVSM---TVILVGFAQNGFEEEAMQLFVKMVK 351
           AL++MY KCG +++A  +FE     EL G +M    V+++G+  N     A++LFV+M++
Sbjct: 182 ALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLE 241

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            GI  D + V  VL +      L +GKQIH LI+      +  V   L+ MY KCGD E 
Sbjct: 242 LGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPET 301

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           S+++F R    N V W S++   A++G   +ALE + E  L+   P  V  L+ L ACS 
Sbjct: 302 SLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSF 361

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
           + L  +GM       ++   S      A +VD  G+ G +  A+     +  + D++ W 
Sbjct: 362 LSLKPRGMAIHGFAIKMGFDSDVFVGGA-LVDFYGKCGDMEYAQQVFYGLSTR-DLVSWN 419

Query: 532 ALL 534
           AL+
Sbjct: 420 ALI 422



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 168/355 (47%), Gaps = 11/355 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR-SLEL 149
           +  +L+  Y KC     ++++F      + V W +++    +NG  +    FF    L+ 
Sbjct: 285 VGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDC 344

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF   D       L AC    L      IH      G++ +V VG AL+  Y KCG    
Sbjct: 345 GF--PDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEY 402

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            ++VF  +  R++++W A+ISG  QN+  +E LK F  M    I PN++T    +  C+ 
Sbjct: 403 AQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTH 462

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  +   +++H  L +   +++  + ++L+  Y+KCG +  +  +FE     + V+   I
Sbjct: 463 LSVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSI 522

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-KQIHSLIIKSD 388
           L+GF  +G  +E    F KM +A I+ D    +++L        +  G K  +S++   D
Sbjct: 523 LLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMM--ED 580

Query: 389 FTSNPFVN--NGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGN 439
           +   P V     ++++  + G+L  +  +   M  +P + + W S++A+   HGN
Sbjct: 581 YNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRI-WGSLLASCKNHGN 634



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 168/348 (48%), Gaps = 24/348 (6%)

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + A  GL  + +G+QIHG L K     D+ ++++L+ MY KCG+  +A  +FE  EE D 
Sbjct: 46  IKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDS 105

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIH 381
           VS   ++ GF Q+G   +++ +F +MVK       N V+  A L        L  G +IH
Sbjct: 106 VSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIH 165

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR-----MAPRNSVSWNSMIAAFAR 436
             ++K    S+ F+ + LI MY KCGD++++  VF R     +  RN   WN MI  +  
Sbjct: 166 GFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVS 225

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-----VGLVNKGMEFLKSMTEVHRI 491
           +     ALEL+ EM   G+ P   T + +L  CS      VG    G+     + +  R+
Sbjct: 226 NECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRV 285

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG-DSEMGKYAA 550
                    +++M  + G    +    +R     ++++W +++  C+ +G  +E  ++ +
Sbjct: 286 G------TALMEMYFKCGDPETSLQIFKR-SQNHNLVMWGSVMLNCAQNGYPNEALEFFS 338

Query: 551 EKLFLAQPDSPAPYILMANIYSCSG-RWKERAKAIKRMK-EMGVDKET 596
           E  F+     P P IL+A + +CS    K R  AI     +MG D + 
Sbjct: 339 E--FMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDV 384


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 184/551 (33%), Positives = 314/551 (56%), Gaps = 7/551 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y+KC  + NA  LFD MP RD +SWN M+SG+  NG    G   F    EL 
Sbjct: 235 VGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS 294

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + T + SAC+  +   + + +H  V    +  ++++ N+LI  Y   G     
Sbjct: 295 V-DPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEA 353

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  M  ++V++WTA+I+ LV ++L  + ++ +  M L  I P+ +T +S + AC+ +
Sbjct: 354 ETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACI 413

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H I  K  L S + + ++L+DMYSKC  V++A ++F      + VS T ++
Sbjct: 414 GHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLI 473

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +G   N    EA+  F +M ++   + PN V+  +VL       +L  GK+IH+  +++ 
Sbjct: 474 LGLRINNRSFEALLFFRQMKES---MKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              + F+ N +++MY +CG    ++  F+    ++  +WN ++  +A+ G    A+EL++
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M    + P ++TF+SLL ACS  G+V +G+E+   M   + ++P  +HYACVVD++GRA
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FI+ MP++PD  +W ALL AC IH + E+G+ AA+++F     S   YIL+ 
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC 709

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+  G W + +K    M+E G+  + G SW+EI+ +VH+F+  D  H Q+  I+GVL 
Sbjct: 710 NLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLD 769

Query: 629 ELLRLMIDEGY 639
                M + G+
Sbjct: 770 GFCSKMKENGF 780



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 145/466 (31%), Positives = 235/466 (50%), Gaps = 13/466 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS +++   + +A  +F  M  RD  SWN +V G+ + G FD     + R L     
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML-WAEI 194

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  +F  +L  C         K IH  V   G+E +V VGNALIT Y KCG  S+ R 
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F +M  R+ I+W A+ISG  +N    EGL+LF  M    ++P+ +T  +   AC  L  
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + K     D+ + ++L+ MYS  G +E+A  +F   E  D VS T ++  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
              +    +A++ +  M   GI  D   + +VL        L LG ++H + IK+   S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V+N LI+MYSKC  ++++++VF  ++ +N VSW S+I     +   F+AL  + +MK 
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMK- 493

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
           E ++P  VT +S+L AC+ +G + +G E     L++        P A     ++DM  R 
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNA-----ILDMYVRC 548

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           G  + A +       K DV  W  LL   +  G +++     +K+ 
Sbjct: 549 GRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKML 592



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 215/406 (52%), Gaps = 21/406 (5%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V +GNAL++ + + G+      VFG+M  R+V +W  ++ G  +   ++E L L+ +M  
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             I PN  T+ S +  C+G+  +  G++IH  + +   +SD+ + +AL+ MY KCG + +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +F+   + D +S   ++ G+ +NG   E ++LF  M +  ++ D   ++ V     +
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
             +  LG+ +H  ++KS+F  +  +NN LI MYS  G LE++  VFSRM  ++ VSW +M
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMT 486
           IA+   H   FKA+E Y+ M+LEG+ P ++T +S+L AC+ +G ++ G+      +K+  
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             H I   +     ++DM  +   +  A      +  K +V+ W +L+    I+  S   
Sbjct: 432 VSHVIVSNS-----LIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINNRS--- 482

Query: 547 KYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            + A   F    +S  P    L++ + +C+     R  A+ R KE+
Sbjct: 483 -FEALLFFRQMKESMKPNSVTLISVLSACA-----RIGALMRGKEI 522



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 131/278 (47%), Gaps = 14/278 (5%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           +L + + +  +LS  A  GH  LG  LH   IKT           + +  ++ NSL+  Y
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKT----------GLVSHVIVSNSLIDMY 445

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + NA+++F ++  ++ VSW +++ G   N        FF++  E    + +  + 
Sbjct: 446 SKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE--SMKPNSVTL 503

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +LSAC R    +  K IH      G   +  + NA++  Y +CG        F   + 
Sbjct: 504 ISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK- 562

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++V  W  +++G  Q    +  ++LF KM    I+P+ +T++S + ACS    + EG + 
Sbjct: 563 KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEY 622

Query: 280 HGILW-KLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             I+  K  L  +L   + ++D+  + G ++DA+   +
Sbjct: 623 FNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQ 660



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 96/198 (48%), Gaps = 2/198 (1%)

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E+AM+    M++  IE++ +   A+L +     +   G +++ L+  S       + 
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N L++M+ + G+L D+  VF +M+ R+  SWN ++  +A+ G   +AL LY  M    + 
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P   TF S+L  C+ V  + +G E    +          +    ++ M  + G +  AR 
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFG-FESDVDVGNALITMYVKCGDISNARM 254

Query: 517 FIERMPVKPDVLVWQALL 534
             ++MP K D + W A++
Sbjct: 255 LFDKMP-KRDRISWNAMI 271


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 308/557 (55%), Gaps = 3/557 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           + L+  Y+KC  +  A KLFD+MP R  V+WN+M+S  +  G+       +   L  G  
Sbjct: 39  HKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVL 98

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSSGR 211
             D  +F+ I  A     +S   +  H L  + G+E  +  V   ++  Y K G     R
Sbjct: 99  P-DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAR 157

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF  +  ++V+ +TA+I G  Q+ L  E L++F  M    I PN  T  S +++C  L 
Sbjct: 158 FVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLG 217

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            L  G+ IHG++ K  L+S +  +++L+ MYSKC  VED+ ++F        V+ T  +V
Sbjct: 218 DLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIV 277

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  QNG EE A+ +F +M++  I  +   +S++L        L  G+QIH++ +K     
Sbjct: 278 GLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDG 337

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N FV+  LI++Y KCG++E +  VF  +   + VS N+MI A+A++G G +ALEL+E +K
Sbjct: 338 NKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLK 397

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+EP  VTF+S+L AC++ GLV +G +    +   H I    +HY C++D++GRA   
Sbjct: 398 KLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRF 457

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   IE     PDV+ W+ LL AC IHG+ EM +   +K+    P     +IL+ NIY
Sbjct: 458 EEATMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIY 516

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           + +G+W    +     +++ + K   +SW++I+++VH+F+  D  HP+A  I  +L EL+
Sbjct: 517 ASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELI 576

Query: 632 RLMIDEGYVPNKRFILH 648
             +I  GY P+ +F+L 
Sbjct: 577 EKVITLGYNPDTKFVLQ 593



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 178/330 (53%), Gaps = 2/330 (0%)

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
           G+ LI  Y KC   +  RK+F EM  R+++TW ++IS  V     +E ++L+  M    +
Sbjct: 38  GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGV 97

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAW 312
            P++ T+ +   A S +    EG++ HG+   L  + SD  + + ++DMY+K G ++DA 
Sbjct: 98  LPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAR 157

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F+   + D V  T ++VG+ Q+G + EA+++F  MV + I+ +   +++VL   G   
Sbjct: 158 FVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLG 217

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  GK IH L++K    S       L+ MYSKC  +EDSIKVF+ +A  + V+W S I 
Sbjct: 218 DLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIV 277

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
              ++G    AL ++ EM    + P   T  S+LHACS + ++  G E + ++T    + 
Sbjct: 278 GLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAG-EQIHAVTVKLGVD 336

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMP 522
                 A ++ + G+ G + +ARS  + + 
Sbjct: 337 GNKFVDAALIHLYGKCGNVEKARSVFDSLT 366



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 126/274 (45%), Gaps = 12/274 (4%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y + +      SLL+ Y KC+ + +++K+F+ +     V+W + + G ++NG  ++    
Sbjct: 232 YGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSM 291

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F+  +       +  + + IL AC    +    + IH +    G +    V  ALI  Y 
Sbjct: 292 FREMMRCSISP-NHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYG 350

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG+    R VF  +   ++++   +I    QN    E L+LF ++    + PN +T++S
Sbjct: 351 KCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFIS 410

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIE------SALMDMYSKCGSVEDAWQIFE 316
            ++AC+    + EG QI  +     ++++  IE      + ++D+  +    E+A  + E
Sbjct: 411 ILLACNNAGLVEEGCQIFSL-----IRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIE 465

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
             +  D +    +L     +G  E A +   KM+
Sbjct: 466 EGKNPDVIQWRTLLNACKIHGEVEMAEKFMKKML 499



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           SL   K +H+ I+KS  +   F  + LI+ Y KC  + ++ K+F  M  R+ V+WNSMI+
Sbjct: 16  SLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMIS 74

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           +    G   +A+ELY  M  EGV P   TF ++  A S +G+  +G +    +  V    
Sbjct: 75  SHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK-AHGLAVVLGFE 133

Query: 493 PRAEHYAC-VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG-DSEMGKYAA 550
                 A  +VDM  + G + +AR   +R+ +  DV+++ AL+   + HG D E  +   
Sbjct: 134 VSDGFVATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGYNQHGLDGEALEVFE 192

Query: 551 EKLFLAQPDSPAPYILMANIYSC 573
           +   +     P  Y L + + SC
Sbjct: 193 D--MVGSRIKPNEYTLASVLVSC 213


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/541 (34%), Positives = 296/541 (54%), Gaps = 2/541 (0%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A KLFD  P  D   WN +V  + R+G F      + R +++     D  SF  +L AC 
Sbjct: 126 ARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYAR-MQVACVSPDGFSFPCVLKACS 184

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                 + + +H  ++  G+E +V V N L+  Y KCG       VFG +  R +++WT+
Sbjct: 185 ALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTS 244

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +ISG  QN    E L++F +M    + P+ +  +S + A + ++ L  G+ IHG + K+ 
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           L+ +  +  +L  +Y+KCG V  A   F   E    +    ++ G+ +NG+ EEA++LF 
Sbjct: 305 LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M    I  D   V++ +       SL L + +   I  S+F ++  VN  LI+ Y+KCG
Sbjct: 365 LMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCG 424

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            ++ +  VF R+  ++ V W++M+  +  HG G +++ L+  M+  GV P DVTF+ LL 
Sbjct: 425 SVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLT 484

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC + GLV +G +    M + + I PR +HYACVVD++GRAG L  A +F+  MP++P V
Sbjct: 485 ACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGV 543

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            VW ALL AC IH    +G+YAAE+LF   P +   Y+ ++N+Y+ S  W   AK    M
Sbjct: 544 SVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLM 603

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           +E G+ K  G S IEI  ++ +F   DK HP++  I   + +L R + + G+VP+   +L
Sbjct: 604 REKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVL 663

Query: 648 H 648
           H
Sbjct: 664 H 664



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 207/425 (48%), Gaps = 26/425 (6%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L+      G  S  RK+F +    +V  W A++    ++  +   ++++ +M +  ++P+
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             ++   + ACS L AL  GR++HG +++   +SD+ +++ L+ +Y+KCG +  A  +F 
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              +   VS T I+ G+AQNG   EA+++F +M K  +  D   + +VL  +     L  
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK IH  +IK        +   L ++Y+KCG +  +   F+++   + + WN+MI+ + +
Sbjct: 293 GKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVK 352

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G   +A+EL+  MK + + P  +T  S + AC+ +G     +E  + M E   +S    
Sbjct: 353 NGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIG----SLELARWMDEYISMSEFRN 408

Query: 497 HY---ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
                  ++D   + G +  AR   +R+P K DV+VW A++    +HG        +  L
Sbjct: 409 DVIVNTSLIDTYAKCGSVDMARFVFDRIPDK-DVVVWSAMMVGYGLHGQGR----ESIIL 463

Query: 554 FLAQPD---SPAPYILMANIYSC--SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           F A      SP     +  + +C  SG  +E      RM++ G         IE   Q +
Sbjct: 464 FHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYG---------IEPRHQHY 514

Query: 609 SFVVD 613
           + VVD
Sbjct: 515 ACVVD 519



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 173/351 (49%), Gaps = 8/351 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N L++ Y KC ++  A  +F  +  R  VSW +++SG+ +NG+       F    +  
Sbjct: 210 VQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTN 269

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  +   +L A    E     K IH  V   G E E  +  +L + Y KCG     
Sbjct: 270 V-RPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVA 328

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R  F ++   ++I W A+ISG V+N   EE ++LF  M    I P+S+T  SS+ AC+ +
Sbjct: 329 RLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQI 388

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   R +   +     ++D+ + ++L+D Y+KCGSV+ A  +F+   + D V  + ++
Sbjct: 389 GSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMM 448

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDF 389
           VG+  +G   E++ LF  M +AG+   PN V+ V G+     + GL ++   L  +  D+
Sbjct: 449 VGYGLHGQGRESIILFHAMRQAGVS--PNDVTFV-GLLTACKNSGLVEEGWDLFHRMRDY 505

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARH 437
              P   +   ++++  + G L+ +      M     VS W ++++A   H
Sbjct: 506 GIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 133/267 (49%), Gaps = 2/267 (0%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QI+  L    LQ    + + L++  S  G V  A ++F+   + D      I+  ++++G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
           F   A++++ +M  A +  D      VL       +L +G+++H  I +  F S+ FV N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           GL+ +Y+KCG++  +  VF R+  R  VSW S+I+ +A++G   +AL ++ EM+   V P
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             +  +S+L A + V  +  G      + ++  +    +    +  +  + G ++ AR F
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKM-GLECEFDLLISLTSLYAKCGHVMVARLF 331

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSE 544
             ++   P ++ W A++     +G +E
Sbjct: 332 FNQVE-NPSLIFWNAMISGYVKNGYAE 357



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N  ++  SL+  Y KC  +  A  +FD +P +D V W+ M+ G+  +G+       F   
Sbjct: 408 NDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAM 467

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
            + G    D  +F  +L+AC  S L
Sbjct: 468 RQAGVSPND-VTFVGLLTACKNSGL 491


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 302/558 (54%), Gaps = 1/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + + L+  Y  C  + +A  +F+ +  +D V W  MVS +  N   +  F  F + + + 
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSK-MRVS 257

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  + T +L A       ++ K IH        + E  VG AL+  Y KCG     
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 317

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R  F  +   +VI  + +IS   Q+   E+  +LF+++    + PN  +  S + AC+ +
Sbjct: 318 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 377

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+QIH    K+  +SDL + +ALMD Y+KC  ++ + +IF    + + VS   I+
Sbjct: 378 VQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV 437

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VGF+Q+G  EEA+ +F +M  A +       S+VL       S+    QIH  I KS F 
Sbjct: 438 VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN 497

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  + N LI+ Y+KCG + D++KVF  +  R+ +SWN++I+ +A HG    ALEL++ M
Sbjct: 498 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRM 557

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               VE  D+TF++LL  CS  GLVN G+    SM   H I P  EHY C+V ++GRAG 
Sbjct: 558 NKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGR 617

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI  +P  P  +VW+ALL +C IH +  +G+++AEK+   +P     Y+L++N+
Sbjct: 618 LNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNM 677

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G   + A   K M+ +GV K  G+SW+EI+ ++H+F V    HP    I+ +L  L
Sbjct: 678 YAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWL 737

Query: 631 LRLMIDEGYVPNKRFILH 648
                 EGY+P+   +LH
Sbjct: 738 NLKTSREGYIPDINVVLH 755



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/457 (28%), Positives = 239/457 (52%), Gaps = 15/457 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y K   + +A +LFD MP R+ VS+ T+V    + G+F+     F+R L    +
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR-LRWEGH 158

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++Q   T +L      + + ++  +H   +  G++    VG+ LI +Y  C   S    
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH 218

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  ++ + WTA++S   +N   E   ++F KM +    PN     S + A   L +
Sbjct: 219 VFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPS 278

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+ IHG   K    ++  +  AL+DMY+KCG ++DA   FE     D + ++ ++  
Sbjct: 279 VVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISR 338

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ+   E+A +LF++++++ +  +   +S+VL        L  GKQIH+  IK    S+
Sbjct: 339 YAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESD 398

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV N L++ Y+KC D++ S+K+FS +   N VSWN+++  F++ G G +AL ++ EM+ 
Sbjct: 399 LFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQA 458

Query: 453 EGVEPTDVTFLSLLHACS------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             +  T VT+ S+L AC+      H G ++  +E  KS      +   +     ++D   
Sbjct: 459 AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGNS-----LIDTYA 511

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           + G + +A    + + ++ D++ W A++   ++HG +
Sbjct: 512 KCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQA 547



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 148/306 (48%), Gaps = 15/306 (4%)

Query: 276 GRQIHGILWKLAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           GR +HG + +     + DL   + L++MY K G +  A ++F+   E + VS   ++   
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQ G  E A  LF ++   G E++  +++ +L +     + GL   +HS   K     N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV +GLI+ YS C  + D+  VF+ +  +++V W +M++ ++ +     A  ++ +M++ 
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVS 257

Query: 454 GVEPTDVTFLSLLHA--CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           G +P      S+L A  C    ++ KG+    ++  ++   P       ++DM  + G +
Sbjct: 258 GCKPNPFALTSVLKAAVCLPSVVLGKGIHGC-AIKTLNDTEPHVG--GALLDMYAKCGDI 314

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMA 568
            +AR   E +P   DV++   ++   S +  S   + A E LFL    S   P  Y L +
Sbjct: 315 KDARLAFEMIPYD-DVILLSFMI---SRYAQSNQNEQAFE-LFLRLMRSSVLPNEYSLSS 369

Query: 569 NIYSCS 574
            + +C+
Sbjct: 370 VLQACT 375



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N TVI NSL+  Y KC  +R+A+K+F  +  RD +SWN ++SG+  +G+       F R 
Sbjct: 498 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR- 556

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           +     + +  +F  +LS C  + L
Sbjct: 557 MNKSNVESNDITFVALLSVCSSTGL 581


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 189/560 (33%), Positives = 325/560 (58%), Gaps = 16/560 (2%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           ++NY  I+ +L+   +         LH+   KT    D+    NV +A      L++ Y 
Sbjct: 347 INNYT-ITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDS----NVSSA------LINMYS 395

Query: 101 KCDQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           K   +  + ++F +M   ++   W  M+S F ++G        F+R L+ G  + D+   
Sbjct: 396 KIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGL-RPDKFCS 454

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           + +LS  D   LSL  ++IHC +   G   +++VG++L T Y KCGS      VF +M  
Sbjct: 455 SSVLSIID--SLSL-GRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPD 511

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++ ++W ++I+G  ++   E+ ++LF +M L  I P+ +T  +++ ACS L +L +G+++
Sbjct: 512 KDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEV 571

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG   +  +  ++ +  AL++MYSKCG++  A ++F+   + D  S + ++ G+AQNG+ 
Sbjct: 572 HGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYI 631

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           E+A+ LF ++  A + ID   VS+V+G   +  SL +G Q+H+ + K    +   V + L
Sbjct: 632 EDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSL 691

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           + MYSKCG +++  KVF ++   + +SW +MI ++A+HG G +AL++Y+ M+ EG +P  
Sbjct: 692 VTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           VTF+ +L ACSH G+V +G   L SM + + I P   HYAC+VD++GR+G L EA  FI 
Sbjct: 752 VTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFIN 811

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP++PD L+W  LL AC +HGD E+G+ AA+++   +P     Y+ ++NI +  G W++
Sbjct: 812 NMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWED 871

Query: 580 RAKAIKRMKEMGVDKETGIS 599
             K    M+  GV KE G S
Sbjct: 872 VMKIRSLMEGTGVKKEPGWS 891



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 181/661 (27%), Positives = 310/661 (46%), Gaps = 38/661 (5%)

Query: 3   SKWVFLKLNSNF--PFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHF 60
           + ++  KL SN     C S+ S  +T+  ++   ST   VL  + D     S   K G  
Sbjct: 2   TSFIHKKLQSNILPSACRSISSLAVTENSEN-FHSTHDTVLPPF-DPFHFFSDYTKSGRC 59

Query: 61  HLGPS--LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
            L  +  LHA F+KT     N         T + NSL+ +Y K + M +A++LFD  P  
Sbjct: 60  TLRNTKILHAHFLKTAILQSN---------TFMTNSLMGWYCKSNSMVHALRLFDKTPHP 110

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           + +SWN ++SG  +N  F+  +  F +    GF   +Q ++  +LSAC      L  +++
Sbjct: 111 NVISWNILISGCNQNFSFEDSWRNFCKMRFSGF-DPNQFTYGSVLSACTALGSPLYGELV 169

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           + L    G+     V   +I  + K  S     +VF ++   NV+ W A+ISG V+N+  
Sbjct: 170 YSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNREN 229

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
              L LF +M      PNS T+ S + AC+ L+ L  GR + G + K     D+ + +A+
Sbjct: 230 WVALDLFCQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAI 289

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +D+Y+KC  ++ A + F      + VS T I+ GF Q      A   F +M K G +I+ 
Sbjct: 290 IDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINN 349

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             +++VL        +    Q+HS I K+ F  +  V++ LINMYSK G ++ S +VF  
Sbjct: 350 YTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFRE 409

Query: 419 M-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV---TFLSLLHACSHVGL 474
           M + +N   W  MI+AFA+ G+  +A+EL++ M  EG+ P      + LS++ + S   L
Sbjct: 410 MESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRL 469

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++  +  +   T++   S        +  M  + G L E+ +  E+MP K +V  W +++
Sbjct: 470 IHCYILKIGLFTDISVGSS-------LFTMYSKCGSLEESYTVFEQMPDKDNV-SWASMI 521

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK-ERAKAIKRM---KEM 590
              S H  +E       ++ L +   P    L A + +CS     E+ K +        +
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEI-RPDQMTLTAALTACSALHSLEKGKEVHGYALRARV 580

Query: 591 GVDKETGISWIEIEKQVHSFVVDDK---MHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           G +   G + + +  +  + V+  +   M PQ D      + L+      GY+ +   + 
Sbjct: 581 GKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFS--CSSLVSGYAQNGYIEDALLLF 638

Query: 648 H 648
           H
Sbjct: 639 H 639


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 306/544 (56%), Gaps = 8/544 (1%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSA 165
           A K F ++   D + WN ++ G+ +    D     +   +++   Q+    FT   +L A
Sbjct: 38  AHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMY---MDMQISQVHPNCFTFLYVLKA 94

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  + +  + K IH   +  G+   V V N+L++ Y K G  S  R VF ++  R V++W
Sbjct: 95  CGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSW 154

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           T++ISG VQN    E L +F +M    + P+ +  +S + A + ++ L +G+ IHG++ K
Sbjct: 155 TSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK 214

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L L+ +  I  +L  MY+K G VE A   F   E+ + +    ++ G+A NG+ EEA++L
Sbjct: 215 LGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKL 274

Query: 346 FVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F +M+   I +D   M SAVL    V  SL L + +   I KS++  + FVN GLI+MY+
Sbjct: 275 FREMITKNIRVDSITMRSAVLASAQVG-SLELARWLDGYISKSEYRDDTFVNTGLIDMYA 333

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +  +  VF R+A ++ V W+ MI  +  HG+G +A+ LY EMK  GV P D TF+ 
Sbjct: 334 KCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIG 393

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           LL AC + GLV +G E    M + H I P  +HY+CVVD++GRAG L +A  FI  MP+K
Sbjct: 394 LLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIK 452

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P V VW ALL AC IH    +G+ AAE+LF+  P +   Y+ ++N+Y+ +  W   A   
Sbjct: 453 PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVR 512

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
             M + G++K+ G S IEI   + +F V D+ HP++  I   L  L + +   GYVP+  
Sbjct: 513 LMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHME 572

Query: 645 FILH 648
            +LH
Sbjct: 573 SVLH 576



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 179/351 (50%), Gaps = 8/351 (2%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
            I +    G  +   K F E+   +++ W A+I G  Q  + +  +++++ M +  ++PN
Sbjct: 25  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 84

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T+L  + AC G      G+QIHG  +K    S++ ++++L+ MY+K G +  A  +F+
Sbjct: 85  CFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD 144

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              +   VS T I+ G+ QNG   EA+ +F +M +  ++ D   + +V+  +     LG 
Sbjct: 145 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 204

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK IH L+ K      P +   L  MY+K G +E +   F+RM   N + WN+MI+ +A 
Sbjct: 205 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYAN 264

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT-EVHRISPRA 495
           +G G +A++L+ EM  + +    +T  S + A + VG     +E  + +   + +   R 
Sbjct: 265 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG----SLELARWLDGYISKSEYRD 320

Query: 496 EHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + +    ++DM  + G +  AR   +R+  K DV++W  ++    +HG  +
Sbjct: 321 DTFVNTGLIDMYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQ 370



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 175/359 (48%), Gaps = 8/359 (2%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   + NSL+S Y K  Q+  A  +FD +  R  VSW +++SG+++NG+       
Sbjct: 114 YGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNV 173

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           FK   +    + D  +   +++A    E     K IH LV   G E E  +  +L T Y 
Sbjct: 174 FKEMRQCNV-KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 232

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           K G     R  F  M   N+I W A+ISG   N   EE +KLF +M    I  +S+T  S
Sbjct: 233 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 292

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +V+A + + +L   R + G + K   + D  + + L+DMY+KCGS+  A  +F+   + D
Sbjct: 293 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 352

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            V  +V+++G+  +G  +EA+ L+ +M +AG  + PN     +G+     + GL K+   
Sbjct: 353 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAG--VCPN-DGTFIGLLTACKNSGLVKEGWE 409

Query: 383 LI-IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARH 437
           L  +  D    P   +   ++++  + G L  +      M  +  VS W ++++A   H
Sbjct: 410 LFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 2/164 (1%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q++  +I S      F+    IN     GD+  + K F  ++  + + WN++I  + +  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
                + +Y +M++  V P   TFL +L AC    +   G + +   T  +         
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 123

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             +V M  + G +  AR   +++  +  V+ W +++     +GD
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKLHDRT-VVSWTSIISGYVQNGD 166


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 212/655 (32%), Positives = 336/655 (51%), Gaps = 50/655 (7%)

Query: 32  PTSSTSKLVLDN--YVDISRLLSISAKEGHFHLGPSLHASFIKT---FEPFDNQNVYNVP 86
           PT + + + L+N  Y      LS+  +         +HA  ++T   F+PF         
Sbjct: 18  PTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSA------- 70

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
            + +I  + LS +   D    A ++FD +P  +  +WNT++  +  +         F R 
Sbjct: 71  -SRLITAAALSPFPSLDY---AQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRM 126

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           L       D+ +F  ++ A    E     K  H +V       +V + N+LI  Y KCG 
Sbjct: 127 LHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGE 186

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
              G +VF  +  R+V++W ++I+  VQ    EE L+LF +M    + PN +T +  + A
Sbjct: 187 LGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSA 246

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+       GR +H  + +  +   L + +A++DMY+KCGSVEDA ++F+   E D VS 
Sbjct: 247 CAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSW 306

Query: 327 TVILVGFA-------------------------------QNGFEEEAMQLF--VKMVKAG 353
           T +LVG+A                               Q G  +EA++LF  +++ K  
Sbjct: 307 TTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTA 366

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
              +  +VS  L       ++ LG  IH  I K     N  +   LI+MY KCGDL+ ++
Sbjct: 367 KPDEVTLVS-TLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            VF  +  ++   W++MIA  A HG+G  A+ L+ +M+ + V+P  VTF ++L ACSHVG
Sbjct: 426 MVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 485

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV +G  F   M  V+ + P  +HYAC+VD++GRAGLL EA   IE+MP+ P   VW AL
Sbjct: 486 LVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGAL 545

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC+IH +  + + A  +L   +P +   Y+L++NIY+ +G+W   +   K M+++G+ 
Sbjct: 546 LGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLK 605

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           KE G S IE++  VH F+V D  HP A  I+  L E++  +   GYVPNK  +L 
Sbjct: 606 KEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQ 660


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 306/544 (56%), Gaps = 8/544 (1%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSA 165
           A K F ++   D + WN ++ G+ +    D     +   +++   Q+    FT   +L A
Sbjct: 53  AHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMY---MDMQISQVHPNCFTFLYVLKA 109

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  + +  + K IH   +  G+   V V N+L++ Y K G  S  R VF ++  R V++W
Sbjct: 110 CGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSW 169

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           T++ISG VQN    E L +F +M    + P+ +  +S + A + ++ L +G+ IHG++ K
Sbjct: 170 TSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTK 229

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L L+ +  I  +L  MY+K G VE A   F   E+ + +    ++ G+A NG+ EEA++L
Sbjct: 230 LGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKL 289

Query: 346 FVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F +M+   I +D   M SAVL    V  SL L + +   I KS++  + FVN GLI+MY+
Sbjct: 290 FREMITKNIRVDSITMRSAVLASAQVG-SLELARWLDGYISKSEYRDDTFVNTGLIDMYA 348

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG +  +  VF R+A ++ V W+ MI  +  HG+G +A+ LY EMK  GV P D TF+ 
Sbjct: 349 KCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIG 408

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           LL AC + GLV +G E    M + H I P  +HY+CVVD++GRAG L +A  FI  MP+K
Sbjct: 409 LLTACKNSGLVKEGWELFHLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIK 467

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P V VW ALL AC IH    +G+ AAE+LF+  P +   Y+ ++N+Y+ +  W   A   
Sbjct: 468 PGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVR 527

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
             M + G++K+ G S IEI   + +F V D+ HP++  I   L  L + +   GYVP+  
Sbjct: 528 LMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHME 587

Query: 645 FILH 648
            +LH
Sbjct: 588 SVLH 591



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 179/351 (50%), Gaps = 8/351 (2%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
            I +    G  +   K F E+   +++ W A+I G  Q  + +  +++++ M +  ++PN
Sbjct: 40  FINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPN 99

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T+L  + AC G      G+QIHG  +K    S++ ++++L+ MY+K G +  A  +F+
Sbjct: 100 CFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFD 159

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              +   VS T I+ G+ QNG   EA+ +F +M +  ++ D   + +V+  +     LG 
Sbjct: 160 KLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQ 219

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK IH L+ K      P +   L  MY+K G +E +   F+RM   N + WN+MI+ +A 
Sbjct: 220 GKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYAN 279

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT-EVHRISPRA 495
           +G G +A++L+ EM  + +    +T  S + A + VG     +E  + +   + +   R 
Sbjct: 280 NGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG----SLELARWLDGYISKSEYRD 335

Query: 496 EHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + +    ++DM  + G +  AR   +R+  K DV++W  ++    +HG  +
Sbjct: 336 DTFVNTGLIDMYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQ 385



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 175/359 (48%), Gaps = 8/359 (2%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   +   + NSL+S Y K  Q+  A  +FD +  R  VSW +++SG+++NG+       
Sbjct: 129 YGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNV 188

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           FK   +    + D  +   +++A    E     K IH LV   G E E  +  +L T Y 
Sbjct: 189 FKEMRQCNV-KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYA 247

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           K G     R  F  M   N+I W A+ISG   N   EE +KLF +M    I  +S+T  S
Sbjct: 248 KRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS 307

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +V+A + + +L   R + G + K   + D  + + L+DMY+KCGS+  A  +F+   + D
Sbjct: 308 AVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKD 367

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            V  +V+++G+  +G  +EA+ L+ +M +AG  + PN     +G+     + GL K+   
Sbjct: 368 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAG--VCPN-DGTFIGLLTACKNSGLVKEGWE 424

Query: 383 LI-IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARH 437
           L  +  D    P   +   ++++  + G L  +      M  +  VS W ++++A   H
Sbjct: 425 LFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 2/164 (1%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q++  +I S      F+    IN     GD+  + K F  ++  + + WN++I  + +  
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
                + +Y +M++  V P   TFL +L AC    +   G + +   T  +         
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ-IHGQTFKYGFGSNVFVQ 138

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             +V M  + G +  AR   +++  +  V+ W +++     +GD
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKLHDRT-VVSWTSIISGYVQNGD 181


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 209/660 (31%), Positives = 358/660 (54%), Gaps = 46/660 (6%)

Query: 1   MKSKWVFLKLNSNFPFCSSLV---SPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKE 57
           M S  +F +L  N  +CS+ +   +  IT+  +      +++V D   D   ++S +   
Sbjct: 78  MFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRD-KNIISWN--- 133

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYN--VPNATVIWNSLLSFYLKCDQMRNAVKLFDDM 115
                  S+ A + +   P + QN+++      T+ WN L+S Y+    +  A ++FD M
Sbjct: 134 -------SIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ---ASFTIILSACDRSELS 172
           P R+ VSW  MV G+++ G             E  F+Q+ +    S+T++L         
Sbjct: 187 PERNVVSWTAMVRGYVKEGMIS--------EAETLFWQMPEKNVVSWTVMLGGL------ 232

Query: 173 LVSKMIH--CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           L    I   C ++    E++V     +I  Y + G     R +F EM  RNV++WT +I+
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G VQNQ  +   KLF  M       N +++ + +   +    L E  ++      + ++S
Sbjct: 293 GYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFN---AMPIKS 345

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
            +   +A++  + + G V  A Q+F+   E D  + + ++  + + G E +A++LF  M 
Sbjct: 346 VVAC-NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 351 KAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + GI  + P+++S VL V     +L  G++IH+ +++S F  + +V + L++MY KCG+L
Sbjct: 405 REGIRPNFPSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNL 463

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
             + +VF R A ++ V WNS+I  +A+HG G +AL ++ +M   G+ P DVTF+ +L AC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           S+ G V KG+E   SM   +++  + EHYAC+VD++GRAG L EA   IE+MP++ D ++
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W ALLGAC  H   ++ + AA+KL + +P +  P+IL++NIY+  GRW + A+  + M++
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRD 643

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKM-HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             V K  G SWI +EK+VH F   D   HP+   I+ +L  L  L+ + GY P++ F+LH
Sbjct: 644 RRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLH 703


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 209/660 (31%), Positives = 358/660 (54%), Gaps = 46/660 (6%)

Query: 1   MKSKWVFLKLNSNFPFCSSLV---SPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKE 57
           M S  +F +L  N  +CS+ +   +  IT+  +      +++V D   D   ++S +   
Sbjct: 78  MFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRD-KNIISWN--- 133

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYN--VPNATVIWNSLLSFYLKCDQMRNAVKLFDDM 115
                  S+ A + +   P + QN+++      T+ WN L+S Y+    +  A ++FD M
Sbjct: 134 -------SIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ---ASFTIILSACDRSELS 172
           P R+ VSW  MV G+++ G             E  F+Q+ +    S+T++L         
Sbjct: 187 PERNVVSWTAMVRGYVKEGMIS--------EAETLFWQMPEKNVVSWTVMLGGL------ 232

Query: 173 LVSKMIH--CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           L    I   C ++    E++V     +I  Y + G     R +F EM  RNV++WT +I+
Sbjct: 233 LQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMIT 292

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G VQNQ  +   KLF  M       N +++ + +   +    L E  ++      + ++S
Sbjct: 293 GYVQNQQVDIARKLFEVMP----EKNEVSWTAMLKGYTNCGRLDEASELFN---AMPIKS 345

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
            +   +A++  + + G V  A Q+F+   E D  + + ++  + + G E +A++LF  M 
Sbjct: 346 VVAC-NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 351 KAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + GI  + P+++S VL V     +L  G++IH+ +++S F  + +V + L++MY KCG+L
Sbjct: 405 REGIRPNFPSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNL 463

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
             + +VF R A ++ V WNS+I  +A+HG G +AL ++ +M   G+ P DVTF+ +L AC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           S+ G V KG+E   SM   +++  + EHYAC+VD++GRAG L EA   IE+MP++ D ++
Sbjct: 524 SYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAII 583

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W ALLGAC  H   ++ + AA+KL + +P +  P+IL++NIY+  GRW + A+  + M++
Sbjct: 584 WGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRD 643

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKM-HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             V K  G SWI +EK+VH F   D   HP+   I+ +L  L  L+ + GY P++ F+LH
Sbjct: 644 RRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLH 703


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 190/548 (34%), Positives = 306/548 (55%), Gaps = 10/548 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC ++ +A ++FD MP+R+ VSWN +++G+  + +       F     +G  
Sbjct: 130 SALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSV 189

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  +F ++L+         + + +H  +   G    +   NA IT+Y +C + +  RK
Sbjct: 190 P-DGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRK 248

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQ 271
           +F  +  R++I+W +++     + L +E ++ FV+M     I P+  ++ S++  CS  +
Sbjct: 249 IFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCS--E 306

Query: 272 ALC---EGRQIHGILWKLALQSDLCIESALMDMYSKCGS---VEDAWQIFEFAEELDGVS 325
             C   +GR IH ++ K  L+    + +A++ MY++      +EDA+  F      D VS
Sbjct: 307 HGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVS 366

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              +L G++ +G   +A++ F  M    I  D   +SA L        L LG+Q+HSL++
Sbjct: 367 WNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVV 426

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +S F SN FV++ LI MYSKCG L D+ K F      +SV WNSM+  +A+HG      +
Sbjct: 427 QSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTVTD 486

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+ EM    V    VTF++L+ A SH GLV++G E L +M   ++I  R EHYAC VD+ 
Sbjct: 487 LFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLY 546

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L +A+  IE MP +PD +VW  LLGAC IHG+ E+    A  LF+A+P   + Y+
Sbjct: 547 GRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHSTYV 606

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++++YS  G W +RA   K M+   + K  G SWIE++ +VHSF  DD+ HP+   I  
Sbjct: 607 LLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVHSFNADDRSHPRMVEIFD 666

Query: 626 VLAELLRL 633
           +L  LL++
Sbjct: 667 MLRMLLQV 674



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 133/511 (26%), Positives = 243/511 (47%), Gaps = 26/511 (5%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK----RSL 147
           WN LL+ Y     +  A ++FD++P  D  SWN++++  +  G     +   +    R L
Sbjct: 29  WNQLLTAY-SATGLAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHARGL 87

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               + L  A  +   +        L S  + C     G  + V   +AL+  Y KCG  
Sbjct: 88  AASTFALGSALRSAAAARRPELGAQLQSFSVRC-----GLADNVFPASALLDVYAKCGRL 142

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF  M VRN+++W A+I+G   ++   E ++LF++M      P+  T+   +   
Sbjct: 143 GDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATI 202

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +G +     RQ+HG + K      L   +A +  YS+C ++ D+ +IF+  E  D +S  
Sbjct: 203 AGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWN 262

Query: 328 VILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVS-----AVLGVFGVDTSLGLGKQIH 381
            +L  +A +G ++EAM+ FV+M++ +GI+  P+M S     +V    G D     G+ IH
Sbjct: 263 SMLGAYAYHGLDDEAMRFFVRMMRESGIQ--PDMYSFTSAISVCSEHGCDDQ--QGRSIH 318

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGD---LEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           SL+IK        V N +I MY++  D   +ED+   FS +  +++VSWNSM+  ++ HG
Sbjct: 319 SLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSWNSMLTGYSHHG 378

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
               AL+ +  M+ E +   +    + L +CS + ++  G + + S+      +      
Sbjct: 379 LSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQ-VHSLVVQSGFASNDFVS 437

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE-MGKYAAEKLFLAQ 557
           + ++ M  + G+L +AR   E    K   + W +++   + HG ++ +     E L L  
Sbjct: 438 SSLIFMYSKCGVLGDARKSFEEAD-KSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEV 496

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           P     ++ +   YS  G   E ++ +  M+
Sbjct: 497 PLDHVTFVALITAYSHGGLVDEGSEILNTME 527



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 181/396 (45%), Gaps = 16/396 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL+  A    + L   LH   +K          Y      V  N+ ++ Y +CD + ++ 
Sbjct: 198 LLATIAGPRWYSLMRQLHGKIVK----------YGSALGLVALNAAITAYSQCDALADSR 247

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+FD +  RD +SWN+M+  +  +G  D    FF R +     Q D  SFT  +S C   
Sbjct: 248 KIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEH 307

Query: 170 EL-SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS---SSGRKVFGEMRVRNVITW 225
                  + IH LV   G E    V NA+I  Y +   +         F  +  ++ ++W
Sbjct: 308 GCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVSW 367

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            ++++G   + L  + LK F  M    I  +     +++ +CS L  L  GRQ+H ++ +
Sbjct: 368 NSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQ 427

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
               S+  + S+L+ MYSKCG + DA + FE A++   V    ++ G+AQ+G  +    L
Sbjct: 428 SGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTVTDL 487

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI-HSLIIKSDFTSNPFVNNGLINMYS 404
           F +M+   + +D     A++  +     +  G +I +++  +             +++Y 
Sbjct: 488 FNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYG 547

Query: 405 KCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
           + G L+ + ++   M  + +++ W +++ A   HGN
Sbjct: 548 RAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGN 583



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 166/354 (46%), Gaps = 6/354 (1%)

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           T  N L+T+Y   G +++ R+VF E+   +  +W ++++  V    + +  +L   MH  
Sbjct: 27  TPWNQLLTAYSATGLAAA-RRVFDEIPHPDAASWNSLLAAHVAAGAHRDAWRLLRAMHAR 85

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +  ++    S++ + +  +    G Q+     +  L  ++   SAL+D+Y+KCG + DA
Sbjct: 86  GLAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDA 145

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     + VS   I+ G+  +    EAM+LF++M + G   D    + +L      
Sbjct: 146 RRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGTTFAVLLATIAGP 205

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
               L +Q+H  I+K          N  I  YS+C  L DS K+F  +  R+ +SWNSM+
Sbjct: 206 RWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKIFDGIESRDLISWNSML 265

Query: 432 AAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT---E 487
            A+A HG   +A+  +  M  E G++P   +F S +  CS  G  ++    + S+     
Sbjct: 266 GAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFG 325

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +  ++P       +        ++ +A +    +  K D + W ++L   S HG
Sbjct: 326 LEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFK-DAVSWNSMLTGYSHHG 378


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 297/559 (53%), Gaps = 3/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ ++++  Y K  ++ +A K+FD MP +DT+ WNTM+SG+ +N  +      F+  +  
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              +LD  +   IL A    +   +   IH L    G      V    I+ Y KCG    
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           G  +F E R  +++ + A+I G   N   E  L LF ++ L      S T L S++  SG
Sbjct: 275 GSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSST-LVSLVPVSG 333

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L     IHG   K    S   + +AL  +YSK   +E A ++F+ + E    S   +
Sbjct: 334 HLMLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ QNG  E+A+ LF +M K+    +P  ++ +L       +L LGK +H L+  +DF
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF 451

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ +V+  LI MY+KCG + ++ ++F  M  +N V+WN+MI+ +  HG G +AL ++ E
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYE 511

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G+ PT VTFL +L+ACSH GLV +G E   SM   +   P  +HYAC+VD++GRAG
Sbjct: 512 MLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAG 571

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L  A  FIE M ++P   VW+ LLGAC IH D+ + +  +EKLF   PD+   ++L++N
Sbjct: 572 HLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           I+S    + + A   +  K+  + K  G + IEI +  H F   D+ HPQ   I+  L +
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEK 691

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M + GY P     LH
Sbjct: 692 LEGKMREAGYQPETELALH 710



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 219/475 (46%), Gaps = 21/475 (4%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  +F  +   D   +N ++ GF  N         F    +    + + +++   +SA  
Sbjct: 71  ARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS 130

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   ++IH    + G + E+ +G+ ++  YFK       RKVF  M  ++ I W  
Sbjct: 131 GFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNT 190

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINP-----NSLTYLSSVMACSGLQALCEGRQIHGI 282
           +ISG  +N++Y E +++F      LIN      ++ T L  + A + LQ L  G QIH +
Sbjct: 191 MISGYRKNEMYVESIQVFRD----LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSL 246

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K    S   + +  + +YSKCG ++    +F    + D V+   ++ G+  NG  E +
Sbjct: 247 ATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS 306

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +++ +G  +  + + +++ V G    L L   IH   +KS+F S+  V+  L  +
Sbjct: 307 LSLFKELMLSGARLRSSTLVSLVPVSG---HLMLIYAIHGYCLKSNFLSHASVSTALTTV 363

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSK  ++E + K+F     ++  SWN+MI+ + ++G    A+ L+ EM+     P  VT 
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTI 423

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
             +L AC+ +G ++ G +++  +               ++ M  + G + EAR   + M 
Sbjct: 424 TCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT 482

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
            K +V  W  ++    +HG  +     A  +F    +S   P P   +  +Y+CS
Sbjct: 483 KKNEV-TWNTMISGYGLHGQGQ----EALNIFYEMLNSGITPTPVTFLCVLYACS 532



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 144/299 (48%), Gaps = 2/299 (0%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  + L G+  ++++   L       G+    R +F  ++  +V  +  ++ G   N+  
Sbjct: 40  HAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 239 EEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
              L +F  +     + PNS TY  ++ A SG +    GR IHG        S+L + S 
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSN 159

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV-KAGIEI 356
           ++ MY K   VEDA ++F+   E D +    ++ G+ +N    E++Q+F  ++ ++   +
Sbjct: 160 IVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRL 219

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D   +  +L        L LG QIHSL  K+   S+ +V  G I++YSKCG ++    +F
Sbjct: 220 DTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALF 279

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
                 + V++N+MI  +  +G    +L L++E+ L G      T +SL+    H+ L+
Sbjct: 280 REFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 204/578 (35%), Positives = 312/578 (53%), Gaps = 17/578 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   IK+   FD +NV+       +  SL++ Y K      A K+FD M  +D  
Sbjct: 186 LGEQIHCFVIKS--GFD-ENVF-------VGTSLIAMYTKSGFFDVAEKVFDSMGFKDIR 235

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
             N M+  + R G        FK  L  GF   D  +FT I+S C+        K +  L
Sbjct: 236 CLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDY-TFTNIISTCNGDLGVEEGKQLQGL 294

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
            +  G+  E +VGNA+IT Y   G      ++F  M  +N+I+WTA+ISG  ++   ++ 
Sbjct: 295 AFKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKA 354

Query: 242 LKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           +  F+ +H  L IN +S    + +  CS    L  G QIHG + KL    D+ + +AL+D
Sbjct: 355 VDAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVD 414

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPN 359
           +Y+KC  ++ A  +F+        S   IL GF ++ G EE+ M LF ++  AG++ D  
Sbjct: 415 LYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMV 474

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             S +L +     SL  G+  H+  +K+ F +N  V N +I+MY+KCG +ED+ ++F+ M
Sbjct: 475 TFSRLLSLLANQASLEKGRSFHAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIM 534

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+S+SWN++I+A+A HG   K+L L+EEMK +G +P + T L++L AC++ GL   G+
Sbjct: 535 NCRDSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGI 594

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
                M   + I P  EHYAC+ D++GRAG L EA   I+R P     L+W+ L+  C +
Sbjct: 595 CLFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDIIKRSPFPKSTLLWRTLVNVCKL 654

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+   GK A++ L    P     YIL++N+Y+      E AK  K M ++   KE G S
Sbjct: 655 HGNLNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSDEAAKVRKVMNDLKFRKEAGSS 714

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           WIEI+ +VH FV  DK HP++  I+      L L+ DE
Sbjct: 715 WIEIDNKVHHFVASDKDHPESREIY----TRLELLTDE 748



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/540 (25%), Positives = 266/540 (49%), Gaps = 18/540 (3%)

Query: 44  YVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCD 103
           + D   L+ IS     F LG ++H+  +K     D          T   N++L+ Y+K +
Sbjct: 67  FNDWPELIKISIGSRDFLLGQAVHSYLVKAGSQDD----------TFKGNNVLNLYVKFN 116

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           ++  A K+FD M  R+T++W +++ G+L + +F   F       + G    ++ + T+IL
Sbjct: 117 RLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGDMHKFG-ENFNEHTCTVIL 175

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC   +  ++ + IHC V   G++E V VG +LI  Y K G      KVF  M  +++ 
Sbjct: 176 QACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIR 235

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
               +I    +     + +++F  +      P   T+ + +  C+G   + EG+Q+ G+ 
Sbjct: 236 CLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLA 295

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           +K    S+  + +A++ MY   G  ++A ++F    E + +S T ++ G++++G+ ++A+
Sbjct: 296 FKYGFLSETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLISWTALISGYSRSGYGKKAV 355

Query: 344 QLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
             F+ +  + GI  D  +++A+L       +L LG QIH  ++K     +  V   L+++
Sbjct: 356 DAFLGLHDELGINFDSTLLTAILDCCSDCNNLELGLQIHGFVMKLGCACDVNVATALVDL 415

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF-ARHGNGFKALELYEEMKLEGVEPTDVT 461
           Y+KC  L+ +  VF  ++ +   S+N+++A F    G+    + L+ +++L GV+P  VT
Sbjct: 416 YAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEEDPMILFNQLRLAGVKPDMVT 475

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F  LL   ++   + KG  F  + T              V+ M  + G + +A      M
Sbjct: 476 FSRLLSLLANQASLEKGRSF-HAYTVKTGFDTNISVANSVISMYAKCGSIEDAHQMFNIM 534

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKE 579
             + D + W AL+ A ++HG ++   +  E++     D P  + ++A + +C  SG WK+
Sbjct: 535 NCR-DSISWNALISAYALHGQAQKSLFLFEEMKRKGFD-PDEFTILAILQACTYSGLWKD 592


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 307/559 (54%), Gaps = 3/559 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
            + NSL++ Y K  +   A  +FD+M  RD +SWN++++G  +NG        F + L  
Sbjct: 351 TVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC 410

Query: 150 GFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           G  + DQ + T +L A       L +SK +H          +  V  ALI +Y +     
Sbjct: 411 GL-KPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMK 469

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               +F E    +++ W A+++G  Q+    + LKLF  MH      +  T  +    C 
Sbjct: 470 EAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A+ +G+Q+H    K     DL + S ++DMY KCG +  A   F+     D V+ T 
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G  +NG EE A  +F +M   G+  D   ++ +       T+L  G+QIH+  +K +
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            T++PFV   L++MY+KCG ++D+  +F R+   N  +WN+M+   A+HG G + L+L++
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +MK  G++P  VTF+ +L ACSH GLV++  + ++SM   + I P  EHY+C+ D +GRA
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           GL+ +A + IE M ++    +++ LL AC + GD+E GK  A KL   +P   + Y+L++
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ + +W E   A   MK   V K+ G SWIE++ ++H FVVDD+ + Q + I+  + 
Sbjct: 829 NMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVK 888

Query: 629 ELLRLMIDEGYVPNKRFIL 647
           +++R +  EGYVP   F L
Sbjct: 889 DMIRDIKQEGYVPETDFTL 907



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 216/422 (51%), Gaps = 5/422 (1%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N  +S +L +G++      F   +E    + DQ +F ++L+   + +   + + +HC+  
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDV-ECDQVTFILMLATAVKVDSLALGQQVHCMAL 342

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G +  +TV N+LI  Y K       R VF  M  R++I+W +VI+G+ QN L  E + 
Sbjct: 343 KLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVC 402

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           LF+++    + P+  T  S + A S L + L   +Q+H    K+   SD  + +AL+D Y
Sbjct: 403 LFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAY 462

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           S+   +++A  +FE     D V+   ++ G+ Q+    + ++LF  M K G   D   ++
Sbjct: 463 SRNRCMKEAEILFE-RHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLA 521

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            V    G   ++  GKQ+H+  IKS +  + +V++G+++MY KCGD+  +   F  +   
Sbjct: 522 TVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP 581

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V+W +MI+    +G   +A  ++ +M+L GV P + T  +L  A S +  + +G +  
Sbjct: 582 DDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 641

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +  +++  +      + +VDM  + G + +A    +R+ +  ++  W A+L   + HG+
Sbjct: 642 ANALKLNCTNDPFVGTS-LVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699

Query: 543 SE 544
            +
Sbjct: 700 GK 701



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 211/490 (43%), Gaps = 70/490 (14%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   HA  + TFE    +N    P   +I N+L+S Y KC  +  A ++FD MP RD V
Sbjct: 57  LGKCTHARIL-TFE----EN----PERFLI-NNLISMYSKCGSLTYARRVFDKMPDRDLV 106

Query: 122 SWNTMVSGFLRNGE-----FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
           SWN++++ + ++ E         F  F R L        + + + +L  C  S     S+
Sbjct: 107 SWNSILAAYAQSSECVVENIQQAFLLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVWASE 165

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
             H      G + +  V  AL+  Y K G    G+ +F EM  R+V+ W  ++   ++  
Sbjct: 166 SFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMG 225

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             EE + L    H   +NPN +T                       L  LA  S      
Sbjct: 226 FKEEAIDLSSAFHSSGLNPNEIT-----------------------LRLLARIS------ 256

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI------LVGFAQNGFEEEAMQLFVKMV 350
                    G   DA Q+  FA   D  S++ I      L  +  +G     ++ F  MV
Sbjct: 257 ---------GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMV 307

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           ++ +E D      +L       SL LG+Q+H + +K        V+N LINMY K     
Sbjct: 308 ESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFG 367

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  VF  M+ R+ +SWNS+IA  A++G   +A+ L+ ++   G++P   T  S+L A S
Sbjct: 368 FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427

Query: 471 HVGLVNKGMEFLKSMTEVH--RISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPD 526
            +    +G+   K +  VH  +I+  ++ +    ++D   R   + EA    ER     D
Sbjct: 428 SLP---EGLSLSKQV-HVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF--D 481

Query: 527 VLVWQALLGA 536
           ++ W A++  
Sbjct: 482 LVAWNAMMAG 491



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 37/185 (20%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           + L LGK  H+ I+   F  NP  F+ N LI+MYSKCG L  + +VF +M  R+ VSWNS
Sbjct: 53  SDLMLGKCTHARILT--FEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNS 110

Query: 430 MIAAFARHG-----NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           ++AA+A+       N  +A  L+  ++ + V  + +T   +L  C H G V     F   
Sbjct: 111 ILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF--- 167

Query: 485 MTEVHRISPRAEHYACVVDMVGR---AGLLI----------EARSFIERMPVKPDVLVWQ 531
                        YAC + + G    AG L+          E +   E MP + DV++W 
Sbjct: 168 -----------HGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWN 215

Query: 532 ALLGA 536
            +L A
Sbjct: 216 LMLKA 220



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F  + +A   S+L ++ K  H  +       E  + N LI+ Y KCGS +  R+VF +M 
Sbjct: 43  FGFLRNAITSSDL-MLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMP 101

Query: 219 VRNVITWTAVISGLVQN-----QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
            R++++W ++++   Q+     +  ++   LF  +   ++  + +T    +  C     +
Sbjct: 102 DRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
                 HG   K+ L  D  +  AL+++Y K G V++   +FE     D V   ++L  +
Sbjct: 162 WASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL--GVFGVDTSLGLGKQIHSLIIKSDFTS 391
            + GF+EEA+ L      +G  ++PN ++  L   + G D+  G  K   +    S  + 
Sbjct: 222 LEMGFKEEAIDLSSAFHSSG--LNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSE 279

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRM 419
             F N GL + Y   G     +K F+ M
Sbjct: 280 IIFRNKGL-SEYLHSGQYSALLKCFADM 306


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 295/550 (53%), Gaps = 2/550 (0%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K D    A  L    P R  V+W  ++SG ++NG F     +F + +     + +  +
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSK-MRRENIKPNDFT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F     A     L    K IH +    G   +  VG +    Y K G     +++F EM 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV  W A IS  V +    + +  F++       P+ +T+ + + AC+  + L  GRQ
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG++ +   + D+ + + ++D+Y KC  VE A  +F      + VS   ++    QN  
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +E+A  +F+   K GIE+   MVS+V+  +   + L  G+ +H+L +K+    + FV + 
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSA 300

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY KCG +ED  +VF  M  RN VSWN+MI+ +A  G+   A+ L+EEM+ E V   
Sbjct: 301 LVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-AN 359

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VT + +L ACS  G V  G E  +SM + +RI P AEHYAC+ DM+GRAG++  A  F+
Sbjct: 360 YVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFV 419

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           ++MP++P + VW ALL AC ++G+ E+GK AA+ LF   P     ++L++N+++ +GRW 
Sbjct: 420 QKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWD 479

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           E     K MK++G+ K  G SW+  + +VH F   D  H +   I  +L +L   M   G
Sbjct: 480 EATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAG 539

Query: 639 YVPNKRFILH 648
           Y+P+  + L+
Sbjct: 540 YMPDTNYALY 549



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 16/374 (4%)

Query: 76  PFDNQNVYNVP------NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
           PF  + ++ +       N   +  S    Y K      A +LFD+MP R+   WN  +S 
Sbjct: 74  PFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISN 133

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
            + +G        F     +G  + D  +F   L+AC  +    + + +H LV   G+E 
Sbjct: 134 AVLDGRPGKAIDKFIEFRRVG-GEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEG 192

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V+V N +I  Y KC        VF  M  RN ++W  +++   QN   E+   +F+   
Sbjct: 193 DVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGR 252

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
              I        S + A +G+  L  GR +H +  K  ++ D+ + SAL+DMY KCGS+E
Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGV 367
           D  Q+F    E + VS   ++ G+A  G  + AM LF +M    +    N V+   VL  
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV---ANYVTLICVLSA 369

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                ++ LG +I    ++  +   P   +   + +M  + G +E + +   +M  R ++
Sbjct: 370 CSRGGAVKLGNEIFE-SMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTI 428

Query: 426 S-WNSMIAAFARHG 438
           S W +++ A   +G
Sbjct: 429 SVWGALLNACRVYG 442



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSK      A  + +       V+ T ++ G  QNG+   A+  F KM +  I+  PN 
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIK--PND 58

Query: 361 VSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
            +     F   T+L L   GKQIH++ +K    ++ FV     +MYSK G   ++ ++F 
Sbjct: 59  FTFPC-AFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFD 117

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M PRN   WN+ I+     G   KA++ + E +  G EP  +TF + L+AC+    ++ 
Sbjct: 118 EMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDL 177

Query: 478 GMEF 481
           G + 
Sbjct: 178 GRQL 181



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 17/130 (13%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L +Y+ +S ++S  A       G S+HA  +K            V     + ++L+  Y 
Sbjct: 258 LTDYM-VSSVISAYAGISGLEFGRSVHALAVKAC----------VEGDIFVGSALVDMYG 306

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQAS 158
           KC  + +  ++F +MP R+ VSWN M+SG+   G+ DM    F+  +S  +  Y     +
Sbjct: 307 KCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANY----VT 362

Query: 159 FTIILSACDR 168
              +LSAC R
Sbjct: 363 LICVLSACSR 372


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 197/592 (33%), Positives = 313/592 (52%), Gaps = 15/592 (2%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F  G  LHA  I +F   +N    N          L +FY  C  M  A  +FD + +++
Sbjct: 75  FKQGQQLHAHMI-SFSILENNTYLNTK--------LAAFYAGCGLMSQAEVIFDGIVLKN 125

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +  WN M+ G+  NG        ++  L  G  + D  ++  +L AC    L  + + +H
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFG-QRADNFTYPFVLKACGDLLLVEIGRRVH 184

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             V +CG E ++ VGN+L+  Y K G   + R VF  M  R++ +W  +ISG  +N    
Sbjct: 185 SEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSG 244

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS-DLCIESAL 298
               +F  M    +  +  T L  + AC+ L+A+ EG+ IHG   + ++ + +    ++L
Sbjct: 245 TAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSL 304

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           ++MY  C  + DA ++FE     D VS   +++G+A+NG   E+++LF +M   G   D 
Sbjct: 305 IEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQ 364

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
               AVLG      +L  G  IHS ++K  F +N  V   L++MYSKCG L  S +VF  
Sbjct: 365 VTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDE 424

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  ++ VSW++M+A +  HG G +A+ + + MK   V P +  F S+L ACSH GLV +G
Sbjct: 425 MPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEG 484

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E    M + + + P   HY+C+VD++GRAG L EA   I  M +KP   +W ALL A  
Sbjct: 485 KEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASR 544

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK--ERAKAIKRMKEMGVDKET 596
           +H + ++ + +A+K+F   P   + YI ++NIY+   RW   ER +A+ R K  G+ K  
Sbjct: 545 LHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRK--GLKKSP 602

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G S+IE++  VH F+V DK H Q + I+  L EL + + + GY P+   + +
Sbjct: 603 GCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFY 654


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 308/559 (55%), Gaps = 2/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y KC  +R A   F  +  RD VSW  M++  +++ +F +    ++R    G
Sbjct: 142 VGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDG 201

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                   +T+  +  D + LS   K ++ LV     E +V V N+ +  +   G     
Sbjct: 202 VVPNKITLYTVFNAYGDPNYLS-EGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDA 260

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F +M  R+V+TW  VI+  VQN+ + E ++LF ++    +  N +T++  +   + L
Sbjct: 261 RRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSL 320

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L +G+ IH ++ +     D  + +ALM +Y +C +   AW+IF      D ++ TV+ 
Sbjct: 321 TSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMC 380

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           V +AQNGF +EA+QLF +M   G       + AVL       +L  G+QIHS II++ F 
Sbjct: 381 VAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFR 440

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               V   LINMY KCG + +++ VF +MA R+ + WNSM+ A+A+HG   + L+L+ +M
Sbjct: 441 MEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQM 500

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +L+GV+   V+F+S+L A SH G V  G ++  +M +   I+P  E Y CVVD++GRAG 
Sbjct: 501 QLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGR 560

Query: 511 LIEARSFIERMP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           + EA   + ++    PD ++W  LLGAC  H  ++  K AAE++    P     Y++++N
Sbjct: 561 IQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSN 620

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+ +G W    +  K M+  GV KE G S IEI  +VH F+  D+ HP+   I+  L  
Sbjct: 621 VYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDV 680

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M   GY+P+ + ILH
Sbjct: 681 LNSEMRAAGYIPDTKMILH 699



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 244/454 (53%), Gaps = 5/454 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            ++   L+  Y +C  +  A ++F+ +  +D  +W  M+  + + G++D   G F +  E
Sbjct: 39  NLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQE 98

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  + ++  IL+AC  +E SL   M IH  +   G+E +V VG ALI  Y KCGS 
Sbjct: 99  EDVMPT-KVTYVAILNACASTE-SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSV 156

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                 F  +  R+V++WTA+I+  VQ+  +     L+ +M L  + PN +T  +   A 
Sbjct: 157 RGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAY 216

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                L EG+ ++G++    ++SD+ + ++ ++M+   G + DA ++FE   + D V+  
Sbjct: 217 GDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWN 276

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           +++  + QN    EA++LF ++ + G++ +      +L V+   TSL  GK IH L+ ++
Sbjct: 277 IVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA 336

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +  +  V   L+++Y +C     + K+F  M  ++ ++W  M  A+A++G   +AL+L+
Sbjct: 337 GYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLF 396

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +EM+LEG  PT  T +++L  C+H+  + KG +    + E +R          +++M G+
Sbjct: 397 QEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIE-NRFRMEMVVETALINMYGK 455

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            G + EA S  E+M  K D+LVW ++LGA + HG
Sbjct: 456 CGKMAEAMSVFEKM-AKRDILVWNSMLGAYAQHG 488



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 167/324 (51%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D A F  +L  C  ++     + +H  V   G+E+   V   LI  Y +CGS    ++VF
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +  ++V  WT +I    Q   Y+  L +F +M    + P  +TY++ + AC+  ++L 
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G +IHG + +   + D+ + +AL++MY+KCGSV  AW  F+  E  D VS T ++    
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q+     A  L+ +M   G+  +   +  V   +G    L  GK ++ L+      S+  
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V N  +NM+   G L D+ ++F  M  R+ V+WN +I  + ++ N  +A+ L+  ++ +G
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 455 VEPTDVTFLSLLHACSHVGLVNKG 478
           V+  D+TF+ +L+  + +  + KG
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKG 326



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 171/350 (48%), Gaps = 11/350 (3%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P++  +++ +  CS  + +  GR++H  +     + +  +   L+ MY++CGSV +A Q+
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQV 61

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE  E  D  + T ++  + Q G  + A+ +F +M +  +        A+L       SL
Sbjct: 62  FEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESL 121

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G +IH  I++  F  + FV   LINMY+KCG +  +   F R+  R+ VSW +MIAA 
Sbjct: 122 KDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAAC 181

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            +H     A  LY  M+L+GV P  +T  ++ +A      +++G +F+  +     +   
Sbjct: 182 VQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG-KFVYGLVSSGVMESD 240

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
                  V+M G AGLL +AR   E M V  DV+ W  ++   +++  +E    A     
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDM-VDRDVVTWNIVI---TLYVQNENFGEAVRLFG 296

Query: 555 LAQPD----SPAPYILMANIYSCSGRWKERAKAIKRM-KEMGVDKETGIS 599
             Q D    +   ++LM N+Y+ S     + K I  + KE G D++  ++
Sbjct: 297 RLQQDGVKANDITFVLMLNVYT-SLTSLAKGKVIHELVKEAGYDRDAVVA 345



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 177/370 (47%), Gaps = 37/370 (10%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V    V WN +++ Y++ +    AV+LF  +  +D V  N +                  
Sbjct: 268 VDRDVVTWNIVITLYVQNENFGEAVRLFGRL-QQDGVKANDI------------------ 308

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                        +F ++L+           K+IH LV   GY+ +  V  AL++ Y +C
Sbjct: 309 -------------TFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRC 355

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            +     K+F +M  ++VITWT +     QN   +E L+LF +M L    P S T ++ +
Sbjct: 356 EAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 415

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             C+ L AL +GRQIH  + +   + ++ +E+AL++MY KCG + +A  +FE   + D +
Sbjct: 416 DTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDIL 475

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
               +L  +AQ+G+ +E +QLF +M   G++ D     +VL       S+  G Q    +
Sbjct: 476 VWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAM 535

Query: 385 IKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNG 440
           ++ DF  T  P +   ++++  + G +++++ +  +++    + + W +++ A   H   
Sbjct: 536 LQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKT 594

Query: 441 FKALELYEEM 450
            +A    E++
Sbjct: 595 DQAKAAAEQV 604



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 21/138 (15%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           PTS+T   VLD    ++ L            G  +H+  I        +N + +    V+
Sbjct: 406 PTSATLVAVLDTCAHLAAL----------QKGRQIHSHII--------ENRFRME--MVV 445

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
             +L++ Y KC +M  A+ +F+ M  RD + WN+M+  + ++G +D     F + ++L  
Sbjct: 446 ETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQ-MQLDG 504

Query: 152 YQLDQASFTIILSACDRS 169
            + D  SF  +LSA   S
Sbjct: 505 VKADAVSFVSVLSALSHS 522


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 174/486 (35%), Positives = 282/486 (58%), Gaps = 1/486 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           I++AC +S+    ++ IH  +       +  + N+LI  Y KCG+ S  R VF  +  R+
Sbjct: 68  IITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRD 127

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WT +I+G  QN +  E L L   M      P+  T+ S + A         G Q+H 
Sbjct: 128 VVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHA 187

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K  L  D+ + SAL+DMY++C  ++ A ++F++ +  + VS   ++ GFA+ G  E 
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGET 247

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            +  F +M + G        S+V        +L  G+ +H+ +IKS      FV N ++ 
Sbjct: 248 TLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILG 307

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G + D+ KVF R+  R+ V+WN+M+ AFA++G G +A+  +EE++  G++   +T
Sbjct: 308 MYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQIT 367

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FLS+L ACSH GLV +G ++   M + + + P  +HY   VD++GRAGLL EA  F+ +M
Sbjct: 368 FLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKM 426

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P++P   VW ALLGAC +H ++++G+YAA+ +F   P+   P +L+ NIY+ +G+W + A
Sbjct: 427 PMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAA 486

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +  K MK  GV KE   SW+EIE  VH FV DD  HP+++ I+ +  E+   +   GYVP
Sbjct: 487 RVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVP 546

Query: 642 NKRFIL 647
           N  ++L
Sbjct: 547 NTDYVL 552



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 13/313 (4%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           GL+    +  G + P    Y S + AC+  + L   R IH  L +  L  D  + ++L+ 
Sbjct: 46  GLRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIH 105

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCG+V DA  +F+     D VS T ++ G+AQN    EA+ L   M++A        
Sbjct: 106 MYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFT 165

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            ++ L   G     G+G+Q+H+L +K +   + +V + L++MY++C  ++ +I+VF  + 
Sbjct: 166 FTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLD 225

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +N VSWN++IA FAR G+G   L  + EM+  G   T  T+ S+  A + +G + +G  
Sbjct: 226 SKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQG-- 283

Query: 481 FLKSMTEVHRISPRAEHYACVVD----MVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                   H I    +  A V +    M  ++G +++AR   +R+  + D++ W  +L A
Sbjct: 284 ---RWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQR-DLVTWNTMLTA 339

Query: 537 CSIHGDSEMGKYA 549
            + +G   +GK A
Sbjct: 340 FAQYG---LGKEA 349



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 166/351 (47%), Gaps = 6/351 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+  Y KC  + +A  +FD +P RD VSW  +++G+ +N       G     L   F 
Sbjct: 101 NSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARF- 159

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +    +FT  L A        + + +H L      +E+V VG+AL+  Y +C       +
Sbjct: 160 RPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR 219

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  +N ++W A+I+G  +    E  L  F +M          TY S   A + + A
Sbjct: 220 VFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGA 279

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +GR +H  + K   +    + + ++ MY+K GS+ DA ++F+  ++ D V+   +L  
Sbjct: 280 LEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTA 339

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           FAQ G  +EA+  F ++ K GI+++     +VL        +  GKQ   ++   D+   
Sbjct: 340 FAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMM--KDYNVE 397

Query: 393 PFVNN--GLINMYSKCGDLEDS-IKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           P +++    +++  + G L+++ I VF       +  W +++ A   H N 
Sbjct: 398 PEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 448



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 120/250 (48%), Gaps = 11/250 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  +HA  +K          YN+     + ++LL  Y +C QM  A+++FD +  ++ V
Sbjct: 181 IGEQMHALAVK----------YNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEV 230

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWN +++GF R G+ +     F      GF      +++ + SA  R       + +H  
Sbjct: 231 SWNALIAGFARKGDGETTLMKFAEMQRNGF-GATHFTYSSVFSALARIGALEQGRWVHAH 289

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           +   G +    V N ++  Y K GS    RKVF  +  R+++TW  +++   Q  L +E 
Sbjct: 290 MIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEA 349

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +  F ++    I  N +T+LS + ACS    + EG+Q   ++    ++ ++    + +D+
Sbjct: 350 VAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDL 409

Query: 302 YSKCGSVEDA 311
             + G +++A
Sbjct: 410 LGRAGLLKEA 419


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 212/643 (32%), Positives = 341/643 (53%), Gaps = 22/643 (3%)

Query: 6   VFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPS 65
           V +K  S  P  SS+   F T ++++ T S      DN+   +   +ISA     +LG  
Sbjct: 76  VLIKGFSFSPDASSI--SFYTHLLKNTTLSP-----DNF---TYAFAISASPDD-NLGMC 124

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           LHA  +   + FD+ N++       + ++L+  Y K  ++  A K+FD MP RDTV WNT
Sbjct: 125 LHAHAV--VDGFDS-NLF-------VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNT 174

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M++G +RN  +D     FK  +  G  +LD  +   +L A    +   V   I CL    
Sbjct: 175 MITGLVRNCCYDDSVQVFKDMVAQGV-RLDSTTVATVLPAVAEMQEVKVGMGIQCLALKL 233

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  +  V   LI+ + KC    + R +FG +R  +++++ A+ISG   N   E  +K F
Sbjct: 234 GFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYF 293

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            ++ +     +S T +  +   S    L     I G   K        + +AL  +YS+ 
Sbjct: 294 RELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRL 353

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             ++ A Q+F+ + E    +   ++ G+AQ+G  E A+ LF +M+      +P  ++++L
Sbjct: 354 NEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSIL 413

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +L  GK +H LI   +   N +V+  LI+MY+KCG++ ++ ++F   + +N+V
Sbjct: 414 SACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTV 473

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           +WN+MI  +  HG G +AL+L+ EM   G +P+ VTFLS+L+ACSH GLV +G E   +M
Sbjct: 474 TWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAM 533

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              +RI P AEHYAC+VD++GRAG L +A  FI +MPV+P   VW  LLGAC IH D+ +
Sbjct: 534 VNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNL 593

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
            + A+E+LF   P +   Y+L++NIYS    + + A   + +K+  + K  G + IE+  
Sbjct: 594 ARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNG 653

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             H FV  D+ H Q  +I+  L EL   M + GY       LH
Sbjct: 654 TPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALH 696


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 331/599 (55%), Gaps = 30/599 (5%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           ++ +V D +   + L      EG F LG  L ++ +KT           + +  V+ NS 
Sbjct: 167 SAGVVFDAFTYSTALSFCVGSEG-FLLGLQLQSTVVKT----------GLESDLVVGNSF 215

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y +    R A ++FD+M  +D +SWN+++SG  + G F        R +     +LD
Sbjct: 216 ITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELD 275

Query: 156 QASFT-IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             SFT +I + C  ++L L ++ IH L    GYE  + VGN L++ Y KCG   + + VF
Sbjct: 276 HVSFTSVITTCCHETDLKL-ARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVF 334

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNV++WT +IS    N+  ++ + +F+ M    + PN +T++  + A    + + 
Sbjct: 335 HQMSERNVVSWTTMIS---SNK--DDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIK 389

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           EG +IHG+  K    S+  + ++ + +Y+K  ++EDA + FE     + +S   ++ GFA
Sbjct: 390 EGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFA 449

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGV--FGVDTSLGLGKQIHSLIIKSDFT 390
           QNGF  EA+++F+    A  E  PN  +  +VL    F  D S+  G++ H+ ++K    
Sbjct: 450 QNGFSHEALKMFLS---AAAETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLN 506

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S P V++ L++MY+K G++++S KVF+ M+ +N   W S+I+A++ HG+    + L+ +M
Sbjct: 507 SCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKM 566

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V P  VTFLS+L AC+  G+V+KG E    M EV+ + P  EHY+C+VDM+GRAG 
Sbjct: 567 IKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGR 626

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   +  +P  P   + Q++LG+C +HG+ +MG   AE     +P+    Y+ M NI
Sbjct: 627 LKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNI 686

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK-----QVHSFVVDDKMHPQADTIH 624
           Y+    W + A+  K M++  V KE G SWI++        +  F   DK HP++D I+
Sbjct: 687 YAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIY 745



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 244/509 (47%), Gaps = 39/509 (7%)

Query: 46  DISRLLSISAKEGHFHLGPSLHA-SFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           +++  L++ A  G    G  +H  S    F  F             + N+++  Y K  +
Sbjct: 78  EVTLCLALKACRGDLKRGCQIHGFSTTSGFTSF-----------VCVSNAVMGMYRKAGR 126

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             NA+ +F+++   D VSWNT++SGF  N    +   F  R    G    D  +++  LS
Sbjct: 127 FDNALCIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGVV-FDAFTYSTALS 182

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  SE  L+   +   V   G E ++ VGN+ IT Y + GS    R+VF EM  +++I+
Sbjct: 183 FCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMIS 242

Query: 225 WTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W +++SGL Q   +  E + +F  M    +  + +++ S +  C     L   RQIHG+ 
Sbjct: 243 WNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLC 302

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K   +S L + + LM  YSKCG +E    +F    E + VS T ++     +  +++A+
Sbjct: 303 IKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAV 357

Query: 344 QLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            +F+ M   G+   PN V+ V  +     +  +  G +IH L IK+ F S P V N  I 
Sbjct: 358 SIFLNMRFDGVY--PNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFIT 415

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           +Y+K   LED+ K F  +  R  +SWN+MI+ FA++G   +AL+++     E + P + T
Sbjct: 416 LYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYT 474

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGRAGLLIEAR 515
           F S+L+A +    ++     +K     H    +    +C V      DM  + G + E+ 
Sbjct: 475 FGSVLNAIAFAEDIS-----VKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESE 529

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSE 544
                M  K +  VW +++ A S HGD E
Sbjct: 530 KVFNEMSQK-NQFVWTSIISAYSSHGDFE 557



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 231/462 (50%), Gaps = 20/462 (4%)

Query: 106 RNAVKLFDDMPMRD-TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY--QLDQASFTII 162
           R A KLFD    R+ T S N  +S  LR          FK +L+LG++   +D+ +  + 
Sbjct: 25  RIAHKLFDGSSQRNATTSINHSISESLRRNSPARALSIFKENLQLGYFGRHMDEVTLCLA 84

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L AC R +L    + IH      G+   V V NA++  Y K G   +   +F  +   +V
Sbjct: 85  LKAC-RGDLKRGCQ-IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDV 142

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W  ++SG   NQ+    L   V+M    +  ++ TY +++  C G +    G Q+   
Sbjct: 143 VSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQST 199

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEEE 341
           + K  L+SDL + ++ + MYS+ GS   A ++F+     D +S   +L G +Q G F  E
Sbjct: 200 VVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFE 259

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ +F  M++ G+E+D    ++V+     +T L L +QIH L IK  + S   V N L++
Sbjct: 260 AVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMS 319

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            YSKCG LE    VF +M+ RN VSW +MI++     N   A+ ++  M+ +GV P +VT
Sbjct: 320 RYSKCGVLEAVKSVFHQMSERNVVSWTTMISS-----NKDDAVSIFLNMRFDGVYPNEVT 374

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+ L++A      + +G++      +   +S  +   +  + +  +   L +A+   E +
Sbjct: 375 FVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS-FITLYAKFEALEDAKKAFEDI 433

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
             + +++ W A++   + +G S    + A K+FL+      P
Sbjct: 434 TFR-EIISWNAMISGFAQNGFS----HEALKMFLSAAAETMP 470


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 321/596 (53%), Gaps = 33/596 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L   A      LG  LHA  +K+    D           ++  + L  Y KCD M++A 
Sbjct: 245 VLRSCAALSELRLGGQLHAHALKSDFAADG----------IVRTATLDMYAKCDNMQDAQ 294

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD+    +  S+N M++G+ +          F R +  G    D+ S + +  AC   
Sbjct: 295 ILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALV 353

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           +       I+ L        +V V NA I  Y KC + +   +VF EMR R+ ++W A+I
Sbjct: 354 KGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAII 413

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +   QN    E L LFV M    I P+  T+ S + AC+G  +L  G +IH  + K  + 
Sbjct: 414 AAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMA 472

Query: 290 SDLCIESALMDMYSKCGSVEDAWQI----FEFA------EELDG----------VSMTVI 329
           S+  +  +L+DMYSKCG +E+A +I    F+ A      EEL+           VS   I
Sbjct: 473 SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSI 532

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+      E+A  LF +M++ GI  D    + VL       S GLGKQIH+ +IK + 
Sbjct: 533 ISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL 592

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ ++ + L++MYSKCGDL DS  +F +   R+ V+WN+MI  +A HG G +A++L+E 
Sbjct: 593 QSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFER 652

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M LE ++P  VTF+S+L AC+H+GL++KG+E+   M   + + P+  HY+ +VD++G++G
Sbjct: 653 MILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 712

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQPDSPAPYILMA 568
            +  A   I  MP + D ++W+ LLG C+IH ++ E+ + A   L    P   + Y L++
Sbjct: 713 KVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLS 772

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           N+Y+ +G W++ +   + M+   + KE G SW+E++ ++H F+V DK HP+ + I+
Sbjct: 773 NVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIY 828



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 247/499 (49%), Gaps = 34/499 (6%)

Query: 55  AKEGHFHLGPSLHASFIKT-FEP------------------------FDNQNVYNVPNAT 89
           AK+G   LG   HA  I + F P                        FD   + +V    
Sbjct: 17  AKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDV---- 72

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN +++ Y K + M  A   F+ MP+RD VSWN+M+SG+L+NGE       F      
Sbjct: 73  VSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGRE 132

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  +F IIL  C   E + +   IH +V   G + +V   +AL+  Y K      
Sbjct: 133 GI-EFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 191

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF  +  +N ++W+A+I+G VQN L    LK F +M       +   Y S + +C+ 
Sbjct: 192 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 251

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G Q+H    K    +D  + +A +DMY+KC +++DA  +F+ +E L+  S   +
Sbjct: 252 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAM 311

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G++Q     +A+ LF +++ +G+  D   +S V     +   L  G QI+ L IKS  
Sbjct: 312 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSL 371

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           + +  V N  I+MY KC  L ++ +VF  M  R++VSWN++IAA  ++G G++ L L+  
Sbjct: 372 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 431

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRA 508
           M    +EP + TF S+L AC+  G +  GME   S+ +    S  +    C ++DM  + 
Sbjct: 432 MLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSS--VGCSLIDMYSKC 488

Query: 509 GLLIEARSFIERMPVKPDV 527
           G++ EA     R   + +V
Sbjct: 489 GMIEEAEKIHSRFFQRANV 507



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 49/204 (24%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW----- 427
           +L LGKQ H+ +I S F    FV N L+ +Y+   D   +  VF +M  R+ VSW     
Sbjct: 21  ALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMIN 80

Query: 428 --------------------------NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
                                     NSM++ + ++G   K++E++ +M  EG+E    T
Sbjct: 81  GYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRT 140

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL---IEARSFI 518
           F  +L  CS +   + GM       ++H I  R     C  D+V  + LL    + + F+
Sbjct: 141 FAIILKVCSFLEDTSLGM-------QIHGIVVRV---GCDTDVVAASALLDMYAKGKRFV 190

Query: 519 ERMPV-----KPDVLVWQALLGAC 537
           E + V     + + + W A++  C
Sbjct: 191 ESLRVFQGIPEKNSVSWSAIIAGC 214


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 198/599 (33%), Positives = 330/599 (55%), Gaps = 30/599 (5%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           ++ +V D +   + L      EG F LG  L ++ +KT           + +  V+ NS 
Sbjct: 92  SAGVVFDAFTYSTALSFCVGSEG-FLLGLQLQSTVVKT----------GLESDLVVGNSF 140

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y +    R A ++FD+M  +D +SWN+++SG  + G F        R +     +LD
Sbjct: 141 ITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELD 200

Query: 156 QASFT-IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
             SFT +I + C  ++L L ++ IH L    GYE  + VGN L++ Y KCG   + + VF
Sbjct: 201 HVSFTSVITTCCHETDLKL-ARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVF 259

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNV++WT +IS    N+  ++ + +F+ M    + PN +T++  + A    + + 
Sbjct: 260 HQMSERNVVSWTTMIS---SNK--DDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIK 314

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           EG +IHG+  K    S+  + ++ + +Y+K  ++EDA + FE     + +S   ++ GFA
Sbjct: 315 EGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFA 374

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGV--FGVDTSLGLGKQIHSLIIKSDFT 390
           QNGF  EA+++F+    A  E  PN     +VL    F  D S+  G++ H+ ++K    
Sbjct: 375 QNGFSHEALKMFLS---AAAETMPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLN 431

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S P V++ L++MY+K G++++S KVF+ M+ +N   W S+I+A++ HG+    + L+ +M
Sbjct: 432 SCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKM 491

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V P  VTFLS+L AC+  G+V+KG E    M EV+ + P  EHY+C+VDM+GRAG 
Sbjct: 492 IKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGR 551

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   +  +P  P   + Q++LG+C +HG+ +MG   AE     +P+    Y+ M NI
Sbjct: 552 LKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNI 611

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK-----QVHSFVVDDKMHPQADTIH 624
           Y+    W + A+  K M++  V KE G SWI++        +  F   DK HP++D I+
Sbjct: 612 YAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIY 670



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/509 (28%), Positives = 244/509 (47%), Gaps = 39/509 (7%)

Query: 46  DISRLLSISAKEGHFHLGPSLHA-SFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           +++  L++ A  G    G  +H  S    F  F             + N+++  Y K  +
Sbjct: 3   EVTLCLALKACRGDLKRGCQIHGFSTTSGFTSF-----------VCVSNAVMGMYRKAGR 51

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
             NA+ +F+++   D VSWNT++SGF  N    +   F  R    G    D  +++  LS
Sbjct: 52  FDNALCIFENLVDPDVVSWNTILSGFDDN---QIALNFVVRMKSAGVV-FDAFTYSTALS 107

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C  SE  L+   +   V   G E ++ VGN+ IT Y + GS    R+VF EM  +++I+
Sbjct: 108 FCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMIS 167

Query: 225 WTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W +++SGL Q   +  E + +F  M    +  + +++ S +  C     L   RQIHG+ 
Sbjct: 168 WNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLC 227

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K   +S L + + LM  YSKCG +E    +F    E + VS T ++     +  +++A+
Sbjct: 228 IKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI-----SSNKDDAV 282

Query: 344 QLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            +F+ M   G+   PN V+ V  +     +  +  G +IH L IK+ F S P V N  I 
Sbjct: 283 SIFLNMRFDGVY--PNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFIT 340

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           +Y+K   LED+ K F  +  R  +SWN+MI+ FA++G   +AL+++     E + P + T
Sbjct: 341 LYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYT 399

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGRAGLLIEAR 515
           F S+L+A +    ++     +K     H    +    +C V      DM  + G + E+ 
Sbjct: 400 FGSVLNAIAFAEDIS-----VKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESE 454

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSE 544
                M  K +  VW +++ A S HGD E
Sbjct: 455 KVFNEMSQK-NQFVWTSIISAYSSHGDFE 482



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 207/411 (50%), Gaps = 17/411 (4%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D+ +  + L AC R +L    + IH      G+   V V NA++  Y K G   +   +
Sbjct: 1   MDEVTLCLALKAC-RGDLKRGCQ-IHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +   +V++W  ++SG   NQ+    L   V+M    +  ++ TY +++  C G +  
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G Q+   + K  L+SDL + ++ + MYS+ GS   A ++F+     D +S   +L G 
Sbjct: 116 LLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGL 175

Query: 334 AQNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +Q G F  EA+ +F  M++ G+E+D    ++V+     +T L L +QIH L IK  + S 
Sbjct: 176 SQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L++ YSKCG LE    VF +M+ RN VSW +MI++     N   A+ ++  M+ 
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISS-----NKDDAVSIFLNMRF 290

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           +GV P +VTF+ L++A      + +G++      +   +S  +   +  + +  +   L 
Sbjct: 291 DGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNS-FITLYAKFEALE 349

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           +A+   E +  + +++ W A++   + +G S    + A K+FL+      P
Sbjct: 350 DAKKAFEDITFR-EIISWNAMISGFAQNGFS----HEALKMFLSAAAETMP 395


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 183/554 (33%), Positives = 300/554 (54%), Gaps = 3/554 (0%)

Query: 79  NQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD 137
           N+    + N +V+  N +L  Y +C  + +A KLFD+M   + VS  TM+S +   G  D
Sbjct: 105 NRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLD 164

Query: 138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL 197
              G F R LE G         T++ S  +   L  + + IH  V   G     ++   +
Sbjct: 165 KAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALD-IGRQIHAHVIRAGLCSNASIETGI 223

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           +  Y KCG     ++VF +M V+  + WT ++ G  Q     + LKLFV +    +  +S
Sbjct: 224 VNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDS 283

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
             +   + AC+ L+ L  G+QIH  + KL L+ ++ + + L+D Y KC S E A + F+ 
Sbjct: 284 FVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQE 343

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGL 376
             E + VS + I+ G+ Q    EEA++ F  +  K  + ++    +++     V     +
Sbjct: 344 IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNI 403

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G Q+H+  IK     + +  + LI MYSKCG L+D+ +VF  M   + V+W + I+  A 
Sbjct: 404 GGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAY 463

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +GN  +AL L+E+M   G++P  VTF+++L ACSH GLV +G  +L +M   + ++P  +
Sbjct: 464 YGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTID 523

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HY C++D+  R+GLL EA  F++ MP +PD + W+  L  C  H + E+GK A E+L   
Sbjct: 524 HYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQL 583

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            P+  A Y+L  N+Y+ +G+W+E A+ +K M E  + KE   SWI+ + ++H F+V DK 
Sbjct: 584 DPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKH 643

Query: 617 HPQADTIHGVLAEL 630
           HPQ+  I+  L E 
Sbjct: 644 HPQSQEIYEKLKEF 657



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 208/444 (46%), Gaps = 5/444 (1%)

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G+ +  F FF+   + G   +   S+  +  AC         +++H  + +      V
Sbjct: 58  KHGKLNEAFEFFQEMDKAGV-SVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSV 116

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            + N ++  Y +CGS     K+F EM   N ++ T +IS   +  L ++ + LF +M   
Sbjct: 117 LLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLES 176

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
              P S  Y + + +    +AL  GRQIH  + +  L S+  IE+ +++MY KCG +  A
Sbjct: 177 GDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGA 236

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+       V+ T ++VG+ Q G   +A++LFV ++  G+E D  + S VL      
Sbjct: 237 KRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASL 296

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             L  GKQIH+ + K        V   L++ Y KC   E + + F  +   N VSW+++I
Sbjct: 297 EELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAII 356

Query: 432 AAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           + + +     +A++ ++ ++ +  V     T+ S+  ACS +   N G +      +   
Sbjct: 357 SGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSL 416

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           I  +    A ++ M  + G L +A    E M   PD++ W A +   + +G++       
Sbjct: 417 IGSQYGESA-LITMYSKCGCLDDAHEVFESMD-NPDIVAWTAFISGHAYYGNASEALRLF 474

Query: 551 EKLFLAQPDSPAPYILMANIYSCS 574
           EK+ ++    P     +A + +CS
Sbjct: 475 EKM-VSCGMKPNSVTFIAVLTACS 497


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/540 (35%), Positives = 301/540 (55%), Gaps = 15/540 (2%)

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWN++++ F R+G+       F    +L  +  ++++F   + +C         K IH  
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLSLHP-NRSTFPCTIKSCSSLYDLCAGKQIHQQ 111

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
            ++ GY  ++ V +ALI  Y KCG  +  RK+F E+  RNV++WT++ISG VQN+   E 
Sbjct: 112 AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREA 171

Query: 242 LKLFVKMHL-----------GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           + LF +  L             +  +S+     + AC+ +        +HG+  K   + 
Sbjct: 172 VFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEG 231

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
            L + + LMD Y+KCG +  + ++F+  EE D  S   ++  +AQNG   EA  LF  MV
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 351 KAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           K G E+  N V  SAVL       +L +GK IH  ++K +   N  V   +++MY KCG 
Sbjct: 292 KRG-EVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGR 350

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +E + K F R+  +N  SW  M+A +  HG+G +A++++ EM   G++P  +TF+S+L A
Sbjct: 351 VEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAA 410

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           CSH GL+ +G  +   M     + P  EHY+C+VD++GRAG L EA   I+ M VKPD +
Sbjct: 411 CSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFI 470

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           VW +LLGAC IH + E+G+ +A KLF   P +   Y+L++NIY+ +GRW +  +    MK
Sbjct: 471 VWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMK 530

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             G+ K  G S +E + +VH F+V DK HPQ + I+  L EL   + + GY+PN   +L+
Sbjct: 531 NHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLY 590



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 212/403 (52%), Gaps = 25/403 (6%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+   +   + ++L+  Y KC  + +A KLFD++P R+ VSW +M+SG+++N        
Sbjct: 114 VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVF 173

Query: 142 FFKRSL---ELGFYQL-------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
            FK  L   E  + ++       D      ++SAC R  +  V++ +H L    G+E  +
Sbjct: 174 LFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCL 233

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HL 250
            VGN L+ +Y KCG  S  RKVF  M   +V +W ++I+   QN L  E   LF  M   
Sbjct: 234 AVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKR 293

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           G +  N++T  + ++AC+   AL  G+ IH  + K+ L+ +L + ++++DMY KCG VE 
Sbjct: 294 GEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEM 353

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A + F+  +  +  S TV++ G+  +G  +EAM++F +M++ GI+  PN ++ V  V   
Sbjct: 354 ARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIK--PNYITFV-SVLAA 410

Query: 371 DTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSV 425
            +  GL K+       +K +F   P + +   ++++  + G L+++  +   M  + + +
Sbjct: 411 CSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFI 470

Query: 426 SWNSMIAAFARHGNGFKALELYE--EMKLEGVEPTDVTFLSLL 466
            W S++ A   H N    +EL E    KL  ++P++  +  LL
Sbjct: 471 VWGSLLGACRIHKN----VELGEISARKLFKLDPSNCGYYVLL 509



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 171/344 (49%), Gaps = 15/344 (4%)

Query: 211 RKVFGE-MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           R +FG+ +   +V +W ++I+   ++    + L  F  M    ++PN  T+  ++ +CS 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  LC G+QIH   +     SD+ + SAL+DMYSKCG + DA ++F+   E + VS T +
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 330 LVGFAQNGFEEEAMQLFVKMV-----------KAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
           + G+ QN    EA+ LF + +             G+ +D  ++  V+          + +
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            +H L +K  F     V N L++ Y+KCG++  S KVF  M   +  SWNS+IA +A++G
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 439 NGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
              +A  L+ +M   G V    VT  ++L AC+H G +  G      + ++  +      
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKM-ELEDNLVV 337

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              +VDM  + G +  AR   +R+  + +V  W  ++    +HG
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHG 380


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 301/517 (58%), Gaps = 4/517 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+FY +  ++R A  LFD MP+R  V+WNT++ G  ++   D+    F R +  G  
Sbjct: 51  TALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVS 110

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               +S + +L AC R E +    M+H +   CG+   V VG AL+  Y KC    + ++
Sbjct: 111 P-TASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQ 169

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VFGEM  +NV T+TA+++G V ++   + + L  +M    + PN +TY S + + +  + 
Sbjct: 170 VFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPED 229

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  + K  L+ D  + SAL+ MYSKCG  ED  ++       D VS   ++ G
Sbjct: 230 IDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISG 289

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +  G  +EA Q F++M + G ++D    +++L   G  +SL  G+Q+H+LI+K  + S 
Sbjct: 290 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSV 349

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY++ G + +S  VF  M   N VSWNS+++  A+HG+G + +E++E+M+ 
Sbjct: 350 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRR 409

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVGRAGLL 511
             V+P  +TFLS+L ACSHVGLV+KG+E+   M +  + +  R +HYAC+VD++GRAG L
Sbjct: 410 LHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYL 469

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   I  MP+KP   V++ALL AC IHG+ E+    +++L    P   + ++ ++N +
Sbjct: 470 NEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAF 529

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           +  GRW   A+  + M   G+ KE   SW  IE Q+ 
Sbjct: 530 AGDGRWGNAAEIRETMSGKGIVKEP--SWSRIEDQMQ 564



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 190/413 (46%), Gaps = 46/413 (11%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + V+  +L+  Y KC ++  A ++F +M  ++  ++  +V+GF+ +           R +
Sbjct: 147 SVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAV-LLVREM 205

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           E      +  +++ +LS+    E     K +HC V   G E +  V +AL+T Y KCG  
Sbjct: 206 ERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIW 265

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               KV   +  ++ +++ +VISGL      +E  + F++M     + +  T+ S + A 
Sbjct: 266 EDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAI 325

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
               +L EGRQ+H ++ K+   S + ++++L+ MY++ G++ ++  +F   E  + VS  
Sbjct: 326 GSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWN 385

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----------- 376
            ++ G AQ+G  +E +++F +M +  + + P+ ++  L V    + +GL           
Sbjct: 386 SLMSGCAQHGHGKEVVEMFEQMRR--LHVQPDHIT-FLSVLTACSHVGLVDKGLEYFNLM 442

Query: 377 --------GKQIHSLIIKSDFTSNPFVNNG--LIN-------------MYSKC---GDLE 410
                    +  H   +        ++N    LIN             + S C   G+LE
Sbjct: 443 KDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLE 502

Query: 411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV--EPT 458
            +I+V  R+    P +S     +  AFA  G    A E+ E M  +G+  EP+
Sbjct: 503 IAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPS 555



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 12/215 (5%)

Query: 278 QIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           Q H    KL    S+    +AL+  Y +   + +A  +F+       V+   ++ G AQ+
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
              + A+  F +MV+AG+    + VS+VL       + G G  +HS+ ++  F ++  V 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             L++MY+KC  L  + +VF  M  +N  ++ +++  F        A+ L  EM+  GV 
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 457 PTDVTFLSLLHACS-----------HVGLVNKGME 480
           P  +T+ SLL + +           H  ++ KG+E
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLE 246



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 15/163 (9%)

Query: 379 QIHSLIIKSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           Q H+   K  F+ SNPF N  L+  Y +   L ++  +F +M  R +V+WN++I   A+ 
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                A+  +  M   GV PT  +  S+L AC  V L N G   +     +H +  R   
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVAC--VRLENAGAGAM-----LHSVGLRCGF 144

Query: 498 YACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +A V      VDM  +   L  A+     M  K +V  + AL+
Sbjct: 145 FASVVVGTALVDMYAKCRRLGAAQQVFGEMEEK-NVATFTALV 186


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 301/517 (58%), Gaps = 4/517 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+FY +  ++R A  LFD MP+R  V+WNT++ G  ++   D+    F R +  G  
Sbjct: 51  TALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMVRAGVS 110

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               +S + +L AC R E +    M+H +   CG+   V VG AL+  Y KC    + ++
Sbjct: 111 P-TASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVGTALVDMYAKCRRLGAAQQ 169

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VFGEM  +NV T+TA+++G V ++   + + L  +M    + PN +TY S + + +  + 
Sbjct: 170 VFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLSSFASPED 229

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  + K  L+ D  + SAL+ MYSKCG  ED  ++       D VS   ++ G
Sbjct: 230 IDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQVSFNSVISG 289

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +  G  +EA Q F++M + G ++D    +++L   G  +SL  G+Q+H+LI+K  + S 
Sbjct: 290 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSV 349

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY++ G + +S  VF  M   N VSWNS+++  A+HG+G + +E++E+M+ 
Sbjct: 350 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRR 409

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVGRAGLL 511
             V+P  +TFLS+L ACSHVGLV+KG+E+   M +  + +  R +HYAC+VD++GRAG L
Sbjct: 410 LHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYL 469

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   I  MP+KP   V++ALL AC IHG+ E+    +++L    P   + ++ ++N +
Sbjct: 470 NEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRVSKRLMELNPHDSSVHVQLSNAF 529

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           +  GRW   A+  + M   G+ KE   SW  IE Q+ 
Sbjct: 530 AGDGRWGNAAEIRETMSGKGIVKEP--SWSRIEDQMQ 564



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 190/413 (46%), Gaps = 46/413 (11%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + V+  +L+  Y KC ++  A ++F +M  ++  ++  +V+GF+ +           R +
Sbjct: 147 SVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAV-LLVREM 205

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           E      +  +++ +LS+    E     K +HC V   G E +  V +AL+T Y KCG  
Sbjct: 206 ERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPFVLSALVTMYSKCGIW 265

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               KV   +  ++ +++ +VISGL      +E  + F++M     + +  T+ S + A 
Sbjct: 266 EDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAI 325

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
               +L EGRQ+H ++ K+   S + ++++L+ MY++ G++ ++  +F   E  + VS  
Sbjct: 326 GSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWN 385

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----------- 376
            ++ G AQ+G  +E +++F +M +  + + P+ ++  L V    + +GL           
Sbjct: 386 SLMSGCAQHGHGKEVVEMFEQMRR--LHVQPDHIT-FLSVLTACSHVGLVDKGLEYFNLM 442

Query: 377 --------GKQIHSLIIKSDFTSNPFVNNG--LIN-------------MYSKC---GDLE 410
                    +  H   +        ++N    LIN             + S C   G+LE
Sbjct: 443 KDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLE 502

Query: 411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV--EPT 458
            +I+V  R+    P +S     +  AFA  G    A E+ E M  +G+  EP+
Sbjct: 503 IAIRVSKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPS 555



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 12/215 (5%)

Query: 278 QIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           Q H    KL    S+    +AL+  Y +   + +A  +F+       V+   ++ G AQ+
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
              + A+  F +MV+AG+    + VS+VL       + G G  +HS+ ++  F ++  V 
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFFASVVVG 151

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             L++MY+KC  L  + +VF  M  +N  ++ +++  F        A+ L  EM+  GV 
Sbjct: 152 TALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVA 211

Query: 457 PTDVTFLSLLHACS-----------HVGLVNKGME 480
           P  +T+ SLL + +           H  ++ KG+E
Sbjct: 212 PNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLE 246



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 100/247 (40%), Gaps = 51/247 (20%)

Query: 379 QIHSLIIKSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           Q H+   K  F+ SNPF N  L+  Y +   L ++  +F +M  R +V+WN++I   A+ 
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
                A+  +  M   GV PT  +  S+L AC  V L N G   +     +H +  R   
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVAC--VRLENAGAGAM-----LHSVGLRCGF 144

Query: 498 YACV------VDMVGR--------------------------AGLLIEARSF-------- 517
           +A V      VDM  +                           G ++  R          
Sbjct: 145 FASVVVGTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVRE 204

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA--NIYSCSG 575
           +ER  V P+++ + +LL + +   D + GK       L +     P++L A   +YS  G
Sbjct: 205 MERSGVAPNLMTYSSLLSSFASPEDIDHGKQ-VHCAVLKKGLEHDPFVLSALVTMYSKCG 263

Query: 576 RWKERAK 582
            W++  K
Sbjct: 264 IWEDFVK 270


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 321/596 (53%), Gaps = 33/596 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L   A      LG  LHA  +K+    D           ++  + L  Y KCD M++A 
Sbjct: 287 VLRSCAALSELRLGGQLHAHALKSDFAADG----------IVRTATLDMYAKCDNMQDAQ 336

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD+    +  S+N M++G+ +          F R +  G    D+ S + +  AC   
Sbjct: 337 ILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGL-GFDEISLSGVFRACALV 395

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           +       I+ L        +V V NA I  Y KC + +   +VF EMR R+ ++W A+I
Sbjct: 396 KGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAII 455

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +   QN    E L LFV M    I P+  T+ S + AC+G  +L  G +IH  + K  + 
Sbjct: 456 AAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMA 514

Query: 290 SDLCIESALMDMYSKCGSVEDAWQI----FEFA------EELDG----------VSMTVI 329
           S+  +  +L+DMYSKCG +E+A +I    F+ A      EEL+           VS   I
Sbjct: 515 SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSI 574

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+      E+A  LF +M++ GI  D    + VL       S GLGKQIH+ +IK + 
Sbjct: 575 ISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKEL 634

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+ ++ + L++MYSKCGDL DS  +F +   R+ V+WN+MI  +A HG G +A++L+E 
Sbjct: 635 QSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFER 694

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M LE ++P  VTF+S+L AC+H+GL++KG+E+   M   + + P+  HY+ +VD++G++G
Sbjct: 695 MILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 754

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQPDSPAPYILMA 568
            +  A   I  MP + D ++W+ LLG C+IH ++ E+ + A   L    P   + Y L++
Sbjct: 755 KVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLS 814

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           N+Y+ +G W++ +   + M+   + KE G SW+E++ ++H F+V DK HP+ + I+
Sbjct: 815 NVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIY 870



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 154/499 (30%), Positives = 247/499 (49%), Gaps = 34/499 (6%)

Query: 55  AKEGHFHLGPSLHASFIKT-FEP------------------------FDNQNVYNVPNAT 89
           AK+G   LG   HA  I + F P                        FD   + +V    
Sbjct: 59  AKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDV---- 114

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN +++ Y K + M  A   F+ MP+RD VSWN+M+SG+L+NGE       F      
Sbjct: 115 VSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGRE 174

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + D  +F IIL  C   E + +   IH +V   G + +V   +AL+  Y K      
Sbjct: 175 GI-EFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 233

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF  +  +N ++W+A+I+G VQN L    LK F +M       +   Y S + +C+ 
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G Q+H    K    +D  + +A +DMY+KC +++DA  +F+ +E L+  S   +
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAM 353

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G++Q     +A+ LF +++ +G+  D   +S V     +   L  G QI+ L IKS  
Sbjct: 354 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSL 413

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           + +  V N  I+MY KC  L ++ +VF  M  R++VSWN++IAA  ++G G++ L L+  
Sbjct: 414 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 473

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRA 508
           M    +EP + TF S+L AC+  G +  GME   S+ +    S  +    C ++DM  + 
Sbjct: 474 MLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSS--VGCSLIDMYSKC 530

Query: 509 GLLIEARSFIERMPVKPDV 527
           G++ EA     R   + +V
Sbjct: 531 GMIEEAEKIHSRFFQRANV 549



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 49/204 (24%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L LGKQ H+ +I S F    FV N L+ +Y+   D   +  VF +M  R+ VSWN MI 
Sbjct: 63  ALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMIN 122

Query: 433 AFARHGNGFKA-------------------------------LELYEEMKLEGVEPTDVT 461
            +++  + FKA                               +E++ +M  EG+E    T
Sbjct: 123 GYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRT 182

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL---IEARSFI 518
           F  +L  CS +   + GM       ++H I  R     C  D+V  + LL    + + F+
Sbjct: 183 FAIILKVCSFLEDTSLGM-------QIHGIVVRV---GCDTDVVAASALLDMYAKGKRFV 232

Query: 519 ERMPV-----KPDVLVWQALLGAC 537
           E + V     + + + W A++  C
Sbjct: 233 ESLRVFQGIPEKNSVSWSAIIAGC 256


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 308/581 (53%), Gaps = 11/581 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L    +  +   G SLHA  +KT          ++ ++  + +SLL  Y +  ++ 
Sbjct: 105 VSVVLKACGQSSNIAYGESLHAYAVKT----------SLLSSVFVGSSLLDMYKRVGKIE 154

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            + ++F +MP R+ V+W  +++G +  G +  G  +F           D  +F I L AC
Sbjct: 155 KSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSS-EELSDTFTFAIALKAC 213

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                    K IH  V + G++  V V N+L T Y +CG    G  +F  M  R+V++WT
Sbjct: 214 AGLRQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWT 273

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++I    +    E+ ++ F+KM    + PN  T+ +   AC+ L  L  G Q+H  ++ L
Sbjct: 274 SLIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSL 333

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L   L + +++M MYS CG ++ A  +F+     D +S + I+ G++Q GF EEA + F
Sbjct: 334 GLNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYF 393

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
             M ++G +     ++++L V G    L  G+Q+H+L        N  V + LINMYSKC
Sbjct: 394 SWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKC 453

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G+++++ K+F      + VS  +MI  +A HG   +A++L+E+    G  P  VTF+S+L
Sbjct: 454 GNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVL 513

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+H G ++ G  +   M E + + P  EHY C+VD++ RAG L EA   I+ M  K D
Sbjct: 514 TACTHSGQLDLGFHYFNLMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKD 573

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            +VW  LL AC   GD E G+ AAE++    P      + +ANIYS +G  +E A   K 
Sbjct: 574 DVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKN 633

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           MK  GV KE G S I+I+  V +FV  D+ HP ++ I+ +L
Sbjct: 634 MKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPLSEDIYNIL 674



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 226/454 (49%), Gaps = 5/454 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELG 150
           NS L   +    +R A ++FD MP RD VSW  ++ G++     D     F   R ++  
Sbjct: 38  NSHLRSLINAGNLRVARQVFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPA 97

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D +  +++L AC +S      + +H           V VG++L+  Y + G     
Sbjct: 98  V-SPDTSVVSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKS 156

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF EM  RN +TWTA+I+GLV    Y+EGL  F +M       ++ T+  ++ AC+GL
Sbjct: 157 CRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGL 216

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + +  G+QIH  +      + + + ++L  MY++CG + D   +FE   E D VS T ++
Sbjct: 217 RQVKYGKQIHTHVIVRGFDATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLI 276

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           V + + G EE+A++ F+KM  + +  +    + +       + L  G+Q+H  +      
Sbjct: 277 VAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLN 336

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  V+N ++ MYS CG L+ +  +F  M  R+ +SW+++I  +++ G G +A + +  M
Sbjct: 337 DSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWM 396

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  G +PTD    SLL    ++ ++  G + + ++     +   +   + +++M  + G 
Sbjct: 397 RQSGPKPTDFALASLLSVSGNMAVLEGGRQ-VHALAFCFGLEQNSTVRSTLINMYSKCGN 455

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           + EA    E    + D++   A++   + HG S+
Sbjct: 456 IKEASKIFEETD-RDDIVSLTAMINGYAEHGKSK 488



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           L K +   I    F +N  + + LIN     G+L  + +VF +M  R+ VSW ++I  + 
Sbjct: 22  LEKPVEKTIQVVTFDTNSHLRS-LIN----AGNLRVARQVFDKMPHRDIVSWTAIIKGYV 76

Query: 436 RHGNGFKALELYEEMKL--EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
              N  +A+ L+  M++    V P       +L AC     +  G E L +      +  
Sbjct: 77  TANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYG-ESLHAYAVKTSLLS 135

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                + ++DM  R G + ++      MP + + + W A++
Sbjct: 136 SVFVGSSLLDMYKRVGKIEKSCRVFSEMPFR-NAVTWTAII 175


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 309/559 (55%), Gaps = 28/559 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD-----MGFGFFKR 145
           I N+L++ Y +   +  A ++F++M +RD VSWN M+SG+ + GE       + FG   R
Sbjct: 224 IGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVR 283

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
              L    LD  S T  +SAC  ++     K IH L    GY   V V N LI++Y KC 
Sbjct: 284 EGML----LDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCK 339

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL-KLFVKMHLGLINPNSLTYLSSV 264
                + VF +M  RNV++WT +IS      + EE +  LF  M +  + PN +T++  +
Sbjct: 340 VLRDAKAVFQDMSARNVVSWTTLIS------IDEENVVSLFNAMRVDGVYPNDVTFIGLL 393

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            A +    + EG  +HG+  K  L S+  + ++L+ MY+K  S++++ +IFE       +
Sbjct: 394 HAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTI 453

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGV--DTSLGLGKQI 380
           S   ++ G+AQNG  +EA   F+  +K   EI PN  +  +VL       D SL  G++ 
Sbjct: 454 SWNALISGYAQNGLCKEAFLTFLSAIK---EIKPNQYTFGSVLNAIAAAEDISLKHGQRC 510

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           HS +IK    ++PFV   L++MY K G++ +S +VF+    +   SW  MI+A+ARHG+ 
Sbjct: 511 HSHLIKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDY 570

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
              + LY+E++ EG     +TFLS+L AC   G+V+ G     SM + H I P  EHY+ 
Sbjct: 571 ESVMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSI 630

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +VDM+GR G L EA   + ++P  P + V Q+LLG+C +HG+ EM +   + L    P S
Sbjct: 631 MVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGS 690

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK----QVHSFVVDDKM 616
             PY+LMAN+Y+  G W++ A+  K M+  GV KE G SW+++       +H F   DK 
Sbjct: 691 SGPYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLHLHGFSSGDKS 750

Query: 617 HPQADTIHGVLAELLRLMI 635
           HP+++TI   +AE L L +
Sbjct: 751 HPESETID-RMAEFLGLQM 768



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 250/519 (48%), Gaps = 43/519 (8%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N  +++  LS  A  G F LG  +H   + T             +   + NSL+  Y 
Sbjct: 81  LQNIDEVTLALSFKACRGEFILGAQIHGFVVAT----------GFVSRVTVSNSLMKMYC 130

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K  +   A+ +F+ +   D VSWNT++SGF ++ +  + F  F   + L     D  ++T
Sbjct: 131 KAGRFELALCVFEGLSCPDIVSWNTILSGFEKSVD-ALNFACF---MHLNGVVFDPVTYT 186

Query: 161 IILSAC-DRSELS----LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             LS C DR        L    +H LV  CG+  EV +GNAL+T Y + G      +VF 
Sbjct: 187 TALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFN 246

Query: 216 EMRVRNVITWTAVISGLVQ-NQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           EM +R++++W A++SG  Q  + Y  E + LF  M    +  + ++   ++ AC   + L
Sbjct: 247 EMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNL 306

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+QIHG+  KL   + + + + L+  YSKC  + DA  +F+     + VS T ++   
Sbjct: 307 EFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVVSWTTLI--- 363

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             +  EE  + LF  M   G+   PN V+   +L    +   +  G  +H L +KS  +S
Sbjct: 364 --SIDEENVVSLFNAMRVDGVY--PNDVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSS 419

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
              V+N LI MY+K   +++S K+F  +  + ++SWN++I+ +A++G   +A   +    
Sbjct: 420 EQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEAFLTFLS-A 478

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHY--ACVVDMV 505
           ++ ++P   TF S+L+A +    ++     LK     H    ++    + +    ++DM 
Sbjct: 479 IKEIKPNQYTFGSVLNAIAAAEDIS-----LKHGQRCHSHLIKLGLNTDPFVAGALLDMY 533

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G+ G + E++      P K     W  ++ A + HGD E
Sbjct: 534 GKRGNINESQRVFNETPEKTQ-FSWTGMISAYARHGDYE 571


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 303/545 (55%), Gaps = 1/545 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++FY K   + +A ++FD MP+RD V+WNTMV G++ NG   +    F+   +    
Sbjct: 146 NSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEV 205

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D       L+AC     S+  K IH  V   G E+++ VG +L+  Y KCG  +  R 
Sbjct: 206 QHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M +R V+TW  +I G   N+  +E    F++M    +    +T ++ + AC+  ++
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + +      + +E+AL++MY K G VE + +IF        VS   ++  
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +       EA+ LF++++   +  D   +S V+  F +  SL   +QIHS II   +  N
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N +++MY++ GD+  S ++F +M  ++ +SWN+MI  +A HG G  ALE+++EMK 
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G++P + TF+S+L ACS  GLV++G      M + + + P+ EHY C+ D++GR G L 
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           E   FIE MP+ P   VW +LL A     D ++ +YAAE++F  + D+   YI+++++Y+
Sbjct: 566 EVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYA 625

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +GRW++  +    MKE G+ +   IS +E+     SF   D  H Q+ TIH V + +L 
Sbjct: 626 DAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEV-SNILS 684

Query: 633 LMIDE 637
             I+E
Sbjct: 685 RKIEE 689



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 215/459 (46%), Gaps = 27/459 (5%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           +M  AV+    +   D    N M+ GF   G        ++  LE G  + D+ +F +++
Sbjct: 56  RMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA-RPDRFTFPVVV 114

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
             C R       +  H +V   G E +V   N+L+  Y K G      +VF  M VR+++
Sbjct: 115 KCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIV 174

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           TW  ++ G V N L    L  F +MH  L +  +S+  ++++ AC    +  +G++IHG 
Sbjct: 175 TWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGY 234

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + +  L+ D+ + ++L+DMY KCG V  A  +F        V+   ++ G+A N   +EA
Sbjct: 235 VIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
              F++M   G++++      +L       S   G+ +H  +++  F  +  +   L+ M
Sbjct: 295 FDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEM 354

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM----------KL 452
           Y K G +E S K+F ++A +  VSWN+MIAA+       +A+ L+ E+           +
Sbjct: 355 YGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTM 414

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             V P  V   SL H C  +     G+ + ++   ++           V+ M  R+G ++
Sbjct: 415 STVVPAFVLLGSLRH-CRQIHSYIIGLGYAENTLIMN----------AVLHMYARSGDVV 463

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            +R   ++M V  DV+ W  ++   +IHG    GK A E
Sbjct: 464 ASREIFDKM-VSKDVISWNTMIMGYAIHGQ---GKTALE 498



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 180/363 (49%), Gaps = 8/363 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SLL  Y KC ++  A  +F  MP+R  V+WN M+ G+  N   D  F  F +    G
Sbjct: 246 VGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEG 305

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q++  +   +L+AC ++E SL  + +H  V    +   V +  AL+  Y K G   S 
Sbjct: 306 L-QVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESS 364

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+FG++  + +++W  +I+  +  ++Y E + LF+++    + P+  T  + V A   L
Sbjct: 365 EKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLL 424

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   RQIH  +  L    +  I +A++ MY++ G V  + +IF+     D +S   ++
Sbjct: 425 GSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMI 484

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +G+A +G  + A+++F +M   G++ + +   +VL    V   +  G  +H  ++  ++ 
Sbjct: 485 MGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG-WMHFNLMLQEYG 543

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALEL 446
             P + +   + ++  + GDL + ++    M   P + V W S++ A +R+ N     E 
Sbjct: 544 MIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRV-WGSLLTA-SRNQNDIDIAEY 601

Query: 447 YEE 449
             E
Sbjct: 602 AAE 604



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +LL  Y K  ++ ++ K+F  +  +  VSWN M++ ++    +      F   L  
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             Y  D  + + ++ A          + IH  +   GY E   + NA++  Y + G   +
Sbjct: 406 PLYP-DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVA 464

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            R++F +M  ++VI+W  +I G   +   +  L++F +M    + PN  T++S + ACS
Sbjct: 465 SREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T+I N++L  Y +   +  + ++FD M  +D +SWNTM+ G+  +G+       F   ++
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDE-MK 504

Query: 149 LGFYQLDQASFTIILSACDRSEL 171
               Q ++++F  +L+AC  S L
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGL 527


>gi|296085749|emb|CBI29560.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 214/627 (34%), Positives = 329/627 (52%), Gaps = 64/627 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEP----FDNQNVY----------------NVPNAT 89
           LL     E     G SLH+ +IK+F P    F N  +                 ++ +  
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 90  VI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V  +N++++ Y K  +   A +LFD +P  D VS+NT++S +   GE     G F    E
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 149 LGFYQLDQASFT---IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
           +G   LD   FT   +I + CD  ++ L+ ++ H +    G++  V+V NAL+T Y K G
Sbjct: 134 MG---LDMDGFTLSAVITACCD--DVGLIGQL-HSVAVSSGFDSYVSVNNALLTYYGKNG 187

Query: 206 SSSSGRKVF-GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                ++VF G   +R+ ++W ++I    Q+Q   + L LF +M    +N +  T  S +
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIFEFAEELDG 323
            A + L+ L  G Q HG L K     +  + S L+D+YSKCG  + D  ++FE   E D 
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDL 307

Query: 324 VSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQI 380
           V    ++ G++QN  F E+A++ F +M   GI   PN  S V  +      +S   GKQI
Sbjct: 308 VLWNTMVSGYSQNEEFLEDALECFRQM--QGIGYRPNDCSFVCVISACSNLSSPSQGKQI 365

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           HSL +K                           ++F RMA  N+VS NSMIA +A+HG  
Sbjct: 366 HSLALK---------------------------RLFDRMAEHNTVSLNSMIAGYAQHGIE 398

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            ++L L++ M    + PT +TF+S+L AC+H G V +G  +   M E   I P AEHY+C
Sbjct: 399 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSC 458

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           ++D++GRAG L EA + I RMP  P  + W +LLGAC  HG+ E+   AA ++   +P +
Sbjct: 459 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSN 518

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
            APY++++N+Y+ +GRW+E A   K M++ GV K+ G SWIE++K++H FV +D  HP  
Sbjct: 519 AAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMI 578

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFIL 647
             I+  L E+   M   GYVP+  F  
Sbjct: 579 KEIYEFLEEMSGKMKRAGYVPDGEFFF 605



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/485 (25%), Positives = 218/485 (44%), Gaps = 57/485 (11%)

Query: 154 LDQASFTI-----ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           ++Q S+T+     +L  C         K +H L             N  I  Y KCG  +
Sbjct: 1   MNQISWTLQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLA 60

Query: 209 SGRKVFGEMRVRNVITWTAVISG-------LVQNQLYEE--------------------- 240
             RK F ++   NV ++ A+I+        L+ +QL+++                     
Sbjct: 61  WARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGE 120

Query: 241 ---GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
               L LF  M    ++ +  T  + + AC     L    Q+H +       S + + +A
Sbjct: 121 TAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIG--QLHSVAVSSGFDSYVSVNNA 178

Query: 298 LMDMYSKCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           L+  Y K G ++DA ++F     + D VS   ++V + Q+    +A+ LF +MV+ G+ +
Sbjct: 179 LLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNV 238

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKV 415
           D   +++VL  F     L  G Q H  +IK+ F  N  V +GLI++YSKC G + D  KV
Sbjct: 239 DMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKV 298

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           F  +   + V WN+M++ ++++    + ALE + +M+  G  P D +F+ ++ ACS++  
Sbjct: 299 FEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSS 358

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVD--MVGRAGLLIEARSF------IERMPVKPD 526
            ++G + + S+         AEH    ++  + G A   IE  S       +ER  + P 
Sbjct: 359 PSQGKQ-IHSLALKRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQ-IAPT 416

Query: 527 VLVWQALLGACSIHGDSEMG----KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            + + ++L AC+  G  E G        EK F  +P++   Y  M ++   +G+  E   
Sbjct: 417 SITFISVLSACAHTGRVEEGWNYFNMMKEK-FNIEPEAEH-YSCMIDLLGRAGKLSEAEN 474

Query: 583 AIKRM 587
            I RM
Sbjct: 475 LIARM 479


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/555 (34%), Positives = 309/555 (55%), Gaps = 8/555 (1%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            + N++L  Y K   +  A  LF  +P++D+VSWN ++ G   N E        KR   + 
Sbjct: 462  VANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKR---MK 518

Query: 151  FY--QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            FY   LD+ SF   ++AC         K IH             VG++LI  Y K G   
Sbjct: 519  FYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVE 578

Query: 209  SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            S RKV   +   +++   A+I+GLVQN   +E ++LF ++      P++ T+ S +  C+
Sbjct: 579  SSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638

Query: 269  GLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSM 326
               +   G+Q+H    K A L  D  +  +L+ +Y KC  +EDA ++ E   +  + V  
Sbjct: 639  RPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEW 698

Query: 327  TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            T  + G+AQNG+  +++ +F +M    +  D    ++VL       +L  GK+IH LI+K
Sbjct: 699  TATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVK 758

Query: 387  SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALE 445
            S F S     + L++MYSKCGD+  S ++F  +  R N + WNSMI  FA++G   +AL 
Sbjct: 759  SGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALL 818

Query: 446  LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
            L+++M+   ++P DVT L +L ACSH GL+++G+ F  SM++V+ I PR +HYAC++D++
Sbjct: 819  LFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLL 878

Query: 506  GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
            GR G L +A+  I+++P + D ++W   L AC +H D E GK AA+KL   +P S + Y+
Sbjct: 879  GRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYV 938

Query: 566  LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
             ++++++ +G W E   A + M+E GV K  G SWI +  +   FVV D  HP A +I+ 
Sbjct: 939  FLSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKQSVFVVQDTHHPDALSIYK 998

Query: 626  VLAELLRLMIDEGYV 640
            +L +L  +M  +G +
Sbjct: 999  MLDDLTGMMNKDGRI 1013



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 136/473 (28%), Positives = 244/473 (51%), Gaps = 28/473 (5%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +VP+  V   +++S      ++ +A  L   + M  TV+WN +++ + ++G     FG +
Sbjct: 254 SVPD-QVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLY 312

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           K   + G     +++F  ILSA          + IH      G +  V VG++LI  Y K
Sbjct: 313 KDMKKQGLMPT-RSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVK 371

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
            G  S  +KVF     +N++ W A++ G VQN+L EE +++F  M    +  +  T++S 
Sbjct: 372 HGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSV 431

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC  L +L  GRQ+H I  K  + +DL + +A++DMYSK G+++ A  +F      D 
Sbjct: 432 LGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDS 491

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQ 379
           VS   ++VG A N  E EA+ +  +M   GI +D       ++A   ++ ++T    GKQ
Sbjct: 492 VSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIET----GKQ 547

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IHS  IK +  SN  V + LI++YSK GD+E S KV + +   + V  N++I    ++  
Sbjct: 548 IHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNR 607

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VGLVNKGMEFLKSMTEVHRISPRA-- 495
             +A+EL++++  +G +P++ TF S+L  C+     ++ K         +VH  + ++  
Sbjct: 608 EDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGK---------QVHCYTLKSAI 658

Query: 496 --EHYACVVDMVG---RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
             +  +  + +VG   +  LL +A   +E +P   +++ W A +   + +G S
Sbjct: 659 LNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYS 711



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 210/435 (48%), Gaps = 46/435 (10%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ +LS  ++ G    G  +H   +K+             ++      L+  Y KC ++ 
Sbjct: 160 IAVVLSACSRLGALEHGRQVHCDVLKS----------GFCSSVFCQAGLVDMYAKCGEVD 209

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A ++FD +   DT+ W +M++G+ R G +      F R  ++G                
Sbjct: 210 DARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGS--------------- 254

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  V   + C+               +I++    G     R +   +R+ + + W 
Sbjct: 255 -------VPDQVTCVT--------------IISTLASMGRLGDARTLLKRIRMTSTVAWN 293

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           AVI+   Q+ L  E   L+  M    + P   T+ S + A + + A  EGRQIH    K 
Sbjct: 294 AVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKH 353

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L +++ + S+L+++Y K G + DA ++F+F+ E + V    IL GF QN  +EE +Q+F
Sbjct: 354 GLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMF 413

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
             M +A +E D     +VLG      SL LG+Q+H + IK+   ++ FV N +++MYSK 
Sbjct: 414 QYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKL 473

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G ++ +  +FS +  ++SVSWN++I   A +    +A+ + + MK  G+   +V+F + +
Sbjct: 474 GAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAI 533

Query: 467 HACSHVGLVNKGMEF 481
           +ACS++  +  G + 
Sbjct: 534 NACSNIWAIETGKQI 548



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 174/386 (45%), Gaps = 49/386 (12%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           DQ    ++LSAC R       + +HC V   G+   V     L+  Y KCG     R++F
Sbjct: 156 DQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMF 215

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +   + I WT++I+G  +   Y++ L LF +M      P+ +T ++            
Sbjct: 216 DGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVT------------ 263

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
                              I S L  M    G + DA  + +       V+   ++  ++
Sbjct: 264 -------------------IISTLASM----GRLGDARTLLKRIRMTSTVAWNAVIASYS 300

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q+G + E   L+  M K G+    +  +++L      T+   G+QIH+  +K    +N F
Sbjct: 301 QSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVF 360

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V + LIN+Y K G + D+ KVF     +N V WN+++  F ++    + +++++ M+   
Sbjct: 361 VGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRAD 420

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRA 508
           +E  D TF+S+L AC ++  ++ G        +VH I+ +    A       ++DM  + 
Sbjct: 421 LEADDFTFVSVLGACINLYSLDLG-------RQVHCITIKNGMDADLFVANAMLDMYSKL 473

Query: 509 GLLIEARSFIERMPVKPDVLVWQALL 534
           G +  A++    +PVK D + W AL+
Sbjct: 474 GAIDVAKALFSLIPVK-DSVSWNALI 498



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 137/281 (48%), Gaps = 37/281 (13%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+       + ACS L AL  GRQ+H  + K    S +  ++ L+DMY+KCG V+DA +
Sbjct: 154 TPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARR 213

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F+     D +  T ++ G+ + G  ++A+ LF +M K G    P+ V+ V         
Sbjct: 214 MFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSV--PDQVTCVT-------- 263

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
                                    +I+  +  G L D+  +  R+   ++V+WN++IA+
Sbjct: 264 -------------------------IISTLASMGRLGDARTLLKRIRMTSTVAWNAVIAS 298

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +++ G   +   LY++MK +G+ PT  TF S+L A +++   ++G +   +  + H +  
Sbjct: 299 YSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVK-HGLDA 357

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
                + ++++  + G + +A+   +    + ++++W A+L
Sbjct: 358 NVFVGSSLINLYVKHGCISDAKKVFD-FSTEKNIVMWNAIL 397



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 108/211 (51%), Gaps = 5/211 (2%)

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE--FAEELDGVSMTVILVGFAQN 336
           +H  + +L L     +  AL+D+Y + G V  AW+             + + +L   A++
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           G   + +  F + ++  I   P+   ++ VL       +L  G+Q+H  ++KS F S+ F
Sbjct: 135 GSPRDVLDAFQR-IRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVF 193

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
              GL++MY+KCG+++D+ ++F  +A  +++ W SMIA + R G   +AL L+  M+  G
Sbjct: 194 CQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMG 253

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
             P  VT ++++   + +G +      LK +
Sbjct: 254 SVPDQVTCVTIISTLASMGRLGDARTLLKRI 284


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 316/557 (56%), Gaps = 24/557 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I++++S  AK   + LG  LH++ I+    F   NV+       I ++++  Y KC +++
Sbjct: 72  INKVVSFCAKFASYDLGIQLHSTIIRM--GF-TSNVH-------ICSAVVDMYAKCSEIQ 121

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A ++F++MP R+ V+WN+++            FG+           +   S +  L  C
Sbjct: 122 SAHEVFNEMPERNDVTWNSLI------------FGYLNVMPTCAMRGVTSFSVSTCLVVC 169

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            + E+      +H L    G++  V VG ALI  Y KC       +VF  M  +NV+TWT
Sbjct: 170 SQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVTWT 229

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+++   QN+  +E + L  +M    I  N +TY S + + SG + +   +Q+H  + + 
Sbjct: 230 AMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKYMQYCKQVHCSIIRC 289

Query: 287 ALQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
            L+ +L I + L+ +YSKC  ++ED  +I    +  D +S   ++ G++  G  E+A++ 
Sbjct: 290 GLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQISWNAVIAGYSNLGLGEDALKC 349

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M  A I++D    +++LG  G   ++  G+++H+LI+K+ + S+ +V NGL++MY++
Sbjct: 350 FCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYASSVYVQNGLVSMYAR 409

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG ++DS +VF  M   + VSWN+++   A HG G +A+EL+E+M+   ++P   TFL++
Sbjct: 410 CGAIDDSKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAVELFEQMRKTKIKPNSTTFLAV 469

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           L ACSHVG V+KG+E+   M     + P R EHYA VVD+ GRAG L EA + I  MP+ 
Sbjct: 470 LSACSHVGSVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGRAGYLSEAEAIINCMPMD 529

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           P   V++ALL AC +HG+ E+   +A KL    PD PA YIL++N+ +  G W + A   
Sbjct: 530 PGPSVYKALLSACLVHGNREIAVRSARKLLELWPDDPATYILLSNMLATEGYWDDAADVR 589

Query: 585 KRMKEMGVDKETGISWI 601
           K M + GV K  G SWI
Sbjct: 590 KLMCDRGVRKNPGYSWI 606



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 95/198 (47%), Gaps = 25/198 (12%)

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF  +++ G   +P  ++ V+       S  LG Q+HS II+  FTSN  + + +++MY+
Sbjct: 56  LFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMYA 115

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KC +++ + +VF+ M  RN V+WNS+I         F  L +     + GV    V+  +
Sbjct: 116 KCSEIQSAHEVFNEMPERNDVTWNSLI---------FGYLNVMPTCAMRGVTSFSVS--T 164

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFI 518
            L  CS + + N G        +VH +S +            ++DM  +   + ++    
Sbjct: 165 CLVVCSQLEVRNFG-------AQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVF 217

Query: 519 ERMPVKPDVLVWQALLGA 536
           + M V  +V+ W A++ A
Sbjct: 218 DYM-VDKNVVTWTAMVTA 234


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 318/604 (52%), Gaps = 26/604 (4%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + +LS  A   +  +G  LH++ IK  + F +    N        N+L+  Y K   ++ 
Sbjct: 322 TSILSTCACFEYLEVGRQLHSAIIK--KRFTSNLFVN--------NALIDMYAKAGALKE 371

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K F+ M  RD +SWN ++ G+++       F  F+R +  G    D+ S   ILSAC 
Sbjct: 372 AGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVP-DEVSLASILSACG 430

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             ++    +  HCL    G E  +  G++LI  Y KCG      K +  M  R+V++  A
Sbjct: 431 NIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNA 490

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I+G       +E + L  +M +  + P+ +T+ S +  C G   +  G QIH  + K  
Sbjct: 491 LIAGYALKNT-KESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRG 549

Query: 288 LQSDLC----IESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEA 342
           L   LC    + ++L+ MY     + DA  +F EF+     V  T ++ G  QN   + A
Sbjct: 550 L---LCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVA 606

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + L+ +M    I  D      VL    + +SL  G++IHSLI  + F  +   ++ L++M
Sbjct: 607 LNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDM 666

Query: 403 YSKCGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           Y+KCGD++ S++VF  +A +  V SWNSMI  FA++G    AL++++EM    + P DVT
Sbjct: 667 YAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVT 726

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL +L ACSH G V +G +    M   + I PR +HYAC+VD++GR G L EA  FI+++
Sbjct: 727 FLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKL 786

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
            V+P+ ++W  LLGAC IHGD + G+ AA+KL   +P S +PY+L++N+Y+ SG W E  
Sbjct: 787 EVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEAR 846

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              + M +  + K  G SWI + ++ + FV  D  H   D I   L  L  L+ D     
Sbjct: 847 SLRRTMIKKDIQKIPGCSWIVVGQETNLFVAGDISHSSYDEISKALKHLTALIKD----- 901

Query: 642 NKRF 645
           N RF
Sbjct: 902 NNRF 905



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/465 (29%), Positives = 238/465 (51%), Gaps = 28/465 (6%)

Query: 43  NYVDISRLLSISAKEGHFHL--GPSLHASFIKTFEP------FDNQNVYNVPNATVIWNS 94
           N +  +R +  SA   H H     +L + +++   P      FD      VP+   +  +
Sbjct: 96  NSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVAL-VT 154

Query: 95  LLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +L+ Y+   ++ +A +LF  MP+  R+ V+WN M+SG  +   ++    FF +  + G  
Sbjct: 155 VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGV- 213

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +  +++   +LSA           ++H      G+E  + V ++LI  Y KC      R+
Sbjct: 214 KSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQ 273

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  +N+I W A++    QN      ++LF+ M    I+P+  TY S +  C+  + 
Sbjct: 274 VFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEY 333

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQ+H  + K    S+L + +AL+DMY+K G++++A + FE     D +S   I+VG
Sbjct: 334 LEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVG 393

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + Q   E  A  LF +M+  GI  D   ++++L   G    L  G+Q H L +K    +N
Sbjct: 394 YVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETN 453

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            F  + LI+MYSKCGD++D+ K +S M  R+ VS N++IA +A   N  +++ L  EM++
Sbjct: 454 LFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQI 512

Query: 453 EGVEPTDVTFLSLLHACS-----------HVGLVNKGM----EFL 482
            G++P+++TF SL+  C            H  +V +G+    EFL
Sbjct: 513 LGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFL 557



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 230/502 (45%), Gaps = 61/502 (12%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           LS  AK  + HLG ++H+  IK+           + + +    +L+  Y KC+ +  A  
Sbjct: 54  LSACAKLQNLHLGRAVHSCVIKS----------GLESTSFCQGALIHLYAKCNSLTCART 103

Query: 111 LFDDMPMRD--TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
           +F   P     TVSW  ++SG+++ G        F +         DQ +   +L+A   
Sbjct: 104 IFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV--PDQVALVTVLNA--- 158

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITWT 226
                                           Y   G      ++F +M +  RNV+ W 
Sbjct: 159 --------------------------------YISLGKLDDACQLFQQMPIPIRNVVAWN 186

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +ISG  +   YEE L  F +M    +  +  T  S + A + L AL  G  +H    K 
Sbjct: 187 VMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQ 246

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             +S + + S+L++MY KC   +DA Q+F+   + + +    +L  ++QNGF    M+LF
Sbjct: 247 GFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELF 306

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           + M+  GI  D    +++L        L +G+Q+HS IIK  FTSN FVNN LI+MY+K 
Sbjct: 307 LDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKA 366

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G L+++ K F  M  R+ +SWN++I  + +      A  L+  M L+G+ P +V+  S+L
Sbjct: 367 GALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASIL 426

Query: 467 HACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
            AC ++ ++  G +F    +K   E +  +  +     ++DM  + G + +A      MP
Sbjct: 427 SACGNIKVLEAGQQFHCLSVKLGLETNLFAGSS-----LIDMYSKCGDIKDAHKTYSSMP 481

Query: 523 VKPDVLVWQALLGACSIHGDSE 544
            +  V V  AL+   ++    E
Sbjct: 482 ERSVVSV-NALIAGYALKNTKE 502



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 192/416 (46%), Gaps = 44/416 (10%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN  V G  ++   +    F+   +  G +  DQ +F + LSAC + +   + + +H  V
Sbjct: 16  WNWRVQG-TKHYSSERVLQFYASFMNSG-HSPDQFTFAVTLSACAKLQNLHLGRAVHSCV 73

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--ITWTAVISGLVQNQLYEE 240
              G E       ALI  Y KC S +  R +F      ++  ++WTA+ISG VQ  L  E
Sbjct: 74  IKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHE 133

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L +F KM    + P+ +  ++                                   +++
Sbjct: 134 ALHIFDKMRNSAV-PDQVALVT-----------------------------------VLN 157

Query: 301 MYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
            Y   G ++DA Q+F+       + V+  V++ G A+    EEA+  F +M K G++   
Sbjct: 158 AYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + +++VL       +L  G  +H+  IK  F S+ +V + LINMY KC   +D+ +VF  
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDA 277

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           ++ +N + WN+M+  ++++G     +EL+ +M   G+ P + T+ S+L  C+    +  G
Sbjct: 278 ISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVG 337

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            +   ++ +  R +        ++DM  +AG L EA    E M  + D + W A++
Sbjct: 338 RQLHSAIIK-KRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYR-DHISWNAII 391



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 54/333 (16%)

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +RVR    W   + G  ++   E  L+ +        +P+  T+  ++ AC+ LQ L  G
Sbjct: 11  LRVRQ---WNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLG 66

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFA 334
           R +H  + K  L+S    + AL+ +Y+KC S+  A  IF  A    L  VS T ++ G+ 
Sbjct: 67  RAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYV 126

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q G   EA+ +F KM  + +   P+ V+ V                              
Sbjct: 127 QAGLPHEALHIFDKMRNSAV---PDQVALVT----------------------------- 154

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
               ++N Y   G L+D+ ++F +M    RN V+WN MI+  A+  +  +AL  + +M  
Sbjct: 155 ----VLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSK 210

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH----YACVVDMVGRA 508
            GV+ +  T  S+L A + +  +N G+     +   H I    E      + +++M G+ 
Sbjct: 211 HGVKSSRSTLASVLSAIASLAALNHGL-----LVHAHAIKQGFESSIYVASSLINMYGKC 265

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +  +AR   + +  K +++VW A+LG  S +G
Sbjct: 266 QMPDDARQVFDAISQK-NMIVWNAMLGVYSQNG 297


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/586 (33%), Positives = 316/586 (53%), Gaps = 19/586 (3%)

Query: 60   FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            F+LG  +H   IK        N  ++  +  + N+ L  Y K   + +A  LF  +P +D
Sbjct: 452  FYLGKQVHCVTIK--------NCMDI--SLFVANATLDMYSKYGAIGDAKALFSLIPYKD 501

Query: 120  TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            ++SWN +  G  +N E +      KR + L     D  SF+  ++AC     +   K IH
Sbjct: 502  SISWNALTVGLAQNLEEEEAVCMLKR-MRLHGITPDDVSFSTAINACSNIRATETGKQIH 560

Query: 180  CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            CL    G      VG++LI  Y K G   S RK+F ++   +++   A+I+G VQN   +
Sbjct: 561  CLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNED 620

Query: 240  EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESAL 298
            E ++LF ++    + P+S+T+ S +  CSG      G+Q+H    K   L  D  +  +L
Sbjct: 621  EAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSL 680

Query: 299  MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
              +Y K   +EDA ++  E  +  +    T I+ G+AQNG+ + ++  F +M    +  D
Sbjct: 681  AGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSD 740

Query: 358  PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                ++VL      T+   GK+IH LI KS F S     + LI+MYSKCGD+  S + F 
Sbjct: 741  EATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFK 800

Query: 418  RMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  +  +  WNSMI  FA++G   +AL L+++M+   ++P +VTFL +L AC+H GL++
Sbjct: 801  ELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLIS 860

Query: 477  KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            +G  F  SM +V+ ++PR +HYAC +D++GR G L EA+  I+++P +PD +VW   L A
Sbjct: 861  EGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAA 920

Query: 537  CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
            C +H D E GK AA KL   +P   + Y+L++++++ +G W E     + M+E GV K  
Sbjct: 921  CRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFP 980

Query: 597  GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM-----IDE 637
            G SWI +  +   F+V DK HP    I+ +L +L  +M     IDE
Sbjct: 981  GCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDLTGMMKKDNDIDE 1026



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 241/456 (52%), Gaps = 17/456 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFY 152
           +++S      ++ +A  L   MP   TV+WN ++SG  ++G EF++  G +K     G +
Sbjct: 274 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV-LGLYKDMRSWGLW 332

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              +++F  +LSA    +  +  + +H    + G +  V VG++LI  Y KCG  S  + 
Sbjct: 333 PT-RSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 391

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF     +N++ W A+++G VQN+L EE +++F  M    +  +  T++S + AC+ L +
Sbjct: 392 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 451

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+Q+H +  K  +   L + +A +DMYSK G++ DA  +F      D +S   + VG
Sbjct: 452 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 511

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQN  EEEA+ +  +M   GI  D    S  +       +   GKQIH L IK    SN
Sbjct: 512 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 571

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + LI++YSK GD+E S K+F+++   + V  N++IA F ++ N  +A++L++++  
Sbjct: 572 HAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 631

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVG-- 506
           +G++P+ VTF S+L  CS  G +N  +       +VH  + ++    +     V + G  
Sbjct: 632 DGLKPSSVTFSSILSGCS--GSLNSAIG-----KQVHCYTLKSGVLYDDTLLGVSLAGIY 684

Query: 507 -RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            ++ +L +A   +  MP   ++  W A++   + +G
Sbjct: 685 LKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNG 720



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 195/387 (50%), Gaps = 36/387 (9%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  Y KC  + NA ++FD +   DT+ W++M++ + R G +      F R  ++G   
Sbjct: 208 ALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG--- 264

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
                     SA D+  L                   VT+ + L +S    G       +
Sbjct: 265 ----------SAPDQVTL-------------------VTIISTLASS----GRLDHATAL 291

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
             +M   + + W AVISG  Q+ L    L L+  M    + P   T+ S + A + ++A 
Sbjct: 292 LKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAF 351

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            EG+Q+H       L +++ + S+L+++Y+KCG   DA  +F+ + E + V    +L GF
Sbjct: 352 VEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGF 411

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            QN   EEA+++F  M++  ++ D     ++LG     +S  LGKQ+H + IK+    + 
Sbjct: 412 VQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISL 471

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV N  ++MYSK G + D+  +FS +  ++S+SWN++    A++    +A+ + + M+L 
Sbjct: 472 FVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLH 531

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGME 480
           G+ P DV+F + ++ACS++     G +
Sbjct: 532 GITPDDVSFSTAINACSNIRATETGKQ 558



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 194/445 (43%), Gaps = 45/445 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  Y K  ++  A         R + + ++++S   R+G      G F+        
Sbjct: 105 DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 164

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + DQ    ++LSAC R  +    + +HC V   G+   V    AL+  Y KCG   + R+
Sbjct: 165 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 224

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +   + I W+++I+   +   Y+E L LF +M      P+ +T ++          
Sbjct: 225 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT---------- 274

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
                    I+  LA    L   +AL+       +V  AW                ++ G
Sbjct: 275 ---------IISTLASSGRLDHATALLKKMPTPSTV--AWN--------------AVISG 309

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G E   + L+  M   G+    +  +++L       +   G+Q+H+  +     +N
Sbjct: 310 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 369

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + LIN+Y+KCG   D+  VF     +N V WN+M+  F ++    +A+ +++ M  
Sbjct: 370 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 429

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++  + TF+S+L AC+++     G +     +K+  ++      A      +DM  + 
Sbjct: 430 YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA-----TLDMYSKY 484

Query: 509 GLLIEARSFIERMPVKPDVLVWQAL 533
           G + +A++    +P K D + W AL
Sbjct: 485 GAIGDAKALFSLIPYK-DSISWNAL 508



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 134/280 (47%), Gaps = 37/280 (13%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+       + ACS +  L  GRQ+H  + K    S +  E+AL+DMY+KCG V +A ++
Sbjct: 166 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 225

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+     D +  + ++  + + G  +EA+ LF +M K G    P+ V+ V          
Sbjct: 226 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA--PDQVTLVT--------- 274

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
                                   +I+  +  G L+ +  +  +M   ++V+WN++I+  
Sbjct: 275 ------------------------IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGH 310

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G  F  L LY++M+  G+ PT  TF S+L A +++    +G + + +   +H +   
Sbjct: 311 AQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ-MHAAAVMHGLDAN 369

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
               + ++++  + G   +A++  + +  + ++++W A+L
Sbjct: 370 VFVGSSLINLYAKCGCPSDAKNVFD-LSCEKNIVMWNAML 408


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 209/642 (32%), Positives = 352/642 (54%), Gaps = 40/642 (6%)

Query: 16  FCSSLVSPF---ITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK 72
           +C+S+   +   I +  +     +++ V D   D   +   S   G+F       A ++ 
Sbjct: 11  YCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYL- 69

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
            F+    +N       TV WN L+S Y+K   +  A K FD MP R+ VSW  MV G+++
Sbjct: 70  -FDKMPERN-------TVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQ 121

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQ---ASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
            G             E  F+Q+ +    S+T++L    +      ++ +  ++ +    +
Sbjct: 122 EG--------LVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPV----K 169

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V     +I+ Y + G  +  R++F EM  RNVI+WT +ISG VQN   +   KLF  M 
Sbjct: 170 DVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP 229

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                 N +++ + +M  +    + E  ++   +   A+ +  C  +A++  + + G V 
Sbjct: 230 ----EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVA--C--NAMILGFGQNGEVA 281

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVF 368
            A Q+F+   E D  + + ++  + + GFE EA+ LF  M + G++ + P+++S VL V 
Sbjct: 282 KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLIS-VLSVC 340

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
               SL  G+Q+H+ ++KS F S+ FV + LI MY KCGDL  + ++F R +P++ V WN
Sbjct: 341 ASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWN 400

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           S+I  +A+HG   +AL+++ EM   G+    VTF+ +L ACS+ G V +G+E  +SM   
Sbjct: 401 SIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSK 460

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           + + P+ EHYAC+VD++GRAGL+ +A   I++MPV+ D ++W ALLGAC  H +  + + 
Sbjct: 461 YLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEV 520

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AA+KL   +P +  PYIL++NIY+  GRW + A+  + M+   V K  G SWIE+EK+VH
Sbjct: 521 AAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVH 580

Query: 609 SFV--VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F   V  K HP+  +I  +L +L  ++ + GY P+  F+LH
Sbjct: 581 MFTGGVSTK-HPELSSIMKMLEKLDGMLREAGYYPDSSFVLH 621


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/607 (32%), Positives = 326/607 (53%), Gaps = 14/607 (2%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNV---YNVPNATVIWNSLLSFYLKCDQM 105
           RLLS +    +FH  P +  ++++  +    Q     +N    +++   LL  Y +    
Sbjct: 5   RLLSAN----NFHPFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFERGLT 60

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
             A  LFD+MP RD V+W TM+SG+    E+   +  F   ++ G    +  + + +L A
Sbjct: 61  SQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPPNAFTISSVLKA 120

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEE-VTVGNALITSYFKCGSS-SSGRKVFGEMRVRNVI 223
           C   +     +++H L     + E  + V NAL+  Y  CG        VF +++ +NV+
Sbjct: 121 CKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACVVFHDIKEKNVV 180

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +WT +I+G          L++F +M L    +NP+S++   +V AC+ + +   GRQIH 
Sbjct: 181 SWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISI--AVRACASIGSQNFGRQIHT 238

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +SDL + ++++DMY +CG + +A + F    E D ++   ++ G+ ++    E
Sbjct: 239 AVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAGYERSD-SIE 297

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
              +F +M   G   +    ++++       +L  G+Q+H  I +     N  + N LI+
Sbjct: 298 PFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALID 357

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG++ DS K FS M+  N VSW SM+  +  HG G +A+EL++EM   G+ P  V 
Sbjct: 358 MYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVV 417

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+++LHACSH GLV++G+ ++  M   + I P  E Y CVVD++GR G + +A   I  M
Sbjct: 418 FMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSM 477

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P   D  VW ALLGAC  H  S +GK AA+K    +P+    Y++++NIY+  G+W E A
Sbjct: 478 PFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNIYAAEGKWGEAA 537

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +  K MK  G  K  G SWIE+  QV+SFVV +KM    + ++ VL   ++ M + GYVP
Sbjct: 538 RMRKLMKRAGCRKVAGRSWIEVRNQVYSFVVGNKMGSHKEWVYEVLELPVQHMKEAGYVP 597

Query: 642 NKRFILH 648
               ++H
Sbjct: 598 EVDCLIH 604


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/586 (33%), Positives = 316/586 (53%), Gaps = 19/586 (3%)

Query: 60   FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            F+LG  +H   IK        N  ++  +  + N+ L  Y K   + +A  LF  +P +D
Sbjct: 442  FYLGKQVHCVTIK--------NCMDI--SLFVANATLDMYSKYGAIGDAKALFSLIPYKD 491

Query: 120  TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            ++SWN +  G  +N E +      KR + L     D  SF+  ++AC     +   K IH
Sbjct: 492  SISWNALTVGLAQNLEEEEAVCMLKR-MRLHGITPDDVSFSTAINACSNIRATETGKQIH 550

Query: 180  CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            CL    G      VG++LI  Y K G   S RK+F ++   +++   A+I+G VQN   +
Sbjct: 551  CLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNED 610

Query: 240  EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESAL 298
            E ++LF ++    + P+S+T+ S +  CSG      G+Q+H    K   L  D  +  +L
Sbjct: 611  EAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSL 670

Query: 299  MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
              +Y K   +EDA ++  E  +  +    T I+ G+AQNG+ + ++  F +M    +  D
Sbjct: 671  AGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSD 730

Query: 358  PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                ++VL      T+   GK+IH LI KS F S     + LI+MYSKCGD+  S + F 
Sbjct: 731  EATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFK 790

Query: 418  RMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  +  +  WNSMI  FA++G   +AL L+++M+   ++P +VTFL +L AC+H GL++
Sbjct: 791  ELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLIS 850

Query: 477  KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            +G  F  SM +V+ ++PR +HYAC +D++GR G L EA+  I+++P +PD +VW   L A
Sbjct: 851  EGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAA 910

Query: 537  CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
            C +H D E GK AA KL   +P   + Y+L++++++ +G W E     + M+E GV K  
Sbjct: 911  CRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFP 970

Query: 597  GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM-----IDE 637
            G SWI +  +   F+V DK HP    I+ +L +L  +M     IDE
Sbjct: 971  GCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDLTGMMKKDNDIDE 1016



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 241/456 (52%), Gaps = 17/456 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFY 152
           +++S      ++ +A  L   MP   TV+WN ++SG  ++G EF++  G +K     G +
Sbjct: 264 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV-LGLYKDMRSWGLW 322

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              +++F  +LSA    +  +  + +H    + G +  V VG++LI  Y KCG  S  + 
Sbjct: 323 PT-RSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 381

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF     +N++ W A+++G VQN+L EE +++F  M    +  +  T++S + AC+ L +
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+Q+H +  K  +   L + +A +DMYSK G++ DA  +F      D +S   + VG
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQN  EEEA+ +  +M   GI  D    S  +       +   GKQIH L IK    SN
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 561

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + LI++YSK GD+E S K+F+++   + V  N++IA F ++ N  +A++L++++  
Sbjct: 562 HAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 621

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVG-- 506
           +G++P+ VTF S+L  CS  G +N  +       +VH  + ++    +     V + G  
Sbjct: 622 DGLKPSSVTFSSILSGCS--GSLNSAIG-----KQVHCYTLKSGVLYDDTLLGVSLAGIY 674

Query: 507 -RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            ++ +L +A   +  MP   ++  W A++   + +G
Sbjct: 675 LKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNG 710



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 209/431 (48%), Gaps = 46/431 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  ++ G    G  +H   +K+             ++     +L+  Y KC  + NA 
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKS----------GFSSSVFCEAALVDMYAKCGDVPNAR 213

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++FD +   DT+ W++M++ + R G +      F R  ++G             SA D+ 
Sbjct: 214 RVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG-------------SAPDQV 260

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            L                   VT+ + L +S    G       +  +M   + + W AVI
Sbjct: 261 TL-------------------VTIISTLASS----GRLDHATALLKKMPTPSTVAWNAVI 297

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG  Q+ L    L L+  M    + P   T+ S + A + ++A  EG+Q+H       L 
Sbjct: 298 SGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLD 357

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           +++ + S+L+++Y+KCG   DA  +F+ + E + V    +L GF QN   EEA+++F  M
Sbjct: 358 ANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYM 417

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++  ++ D     ++LG     +S  LGKQ+H + IK+    + FV N  ++MYSK G +
Sbjct: 418 MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAI 477

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            D+  +FS +  ++S+SWN++    A++    +A+ + + M+L G+ P DV+F + ++AC
Sbjct: 478 GDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINAC 537

Query: 470 SHVGLVNKGME 480
           S++     G +
Sbjct: 538 SNIRATETGKQ 548



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 194/445 (43%), Gaps = 45/445 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  Y K  ++  A         R + + ++++S   R+G      G F+        
Sbjct: 95  DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 154

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + DQ    ++LSAC R  +    + +HC V   G+   V    AL+  Y KCG   + R+
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +   + I W+++I+   +   Y+E L LF +M      P+ +T ++          
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT---------- 264

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
                    I+  LA    L   +AL+       +V  AW                ++ G
Sbjct: 265 ---------IISTLASSGRLDHATALLKKMPTPSTV--AWN--------------AVISG 299

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G E   + L+  M   G+    +  +++L       +   G+Q+H+  +     +N
Sbjct: 300 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 359

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + LIN+Y+KCG   D+  VF     +N V WN+M+  F ++    +A+ +++ M  
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 419

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++  + TF+S+L AC+++     G +     +K+  ++      A      +DM  + 
Sbjct: 420 YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA-----TLDMYSKY 474

Query: 509 GLLIEARSFIERMPVKPDVLVWQAL 533
           G + +A++    +P K D + W AL
Sbjct: 475 GAIGDAKALFSLIPYK-DSISWNAL 498



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 134/280 (47%), Gaps = 37/280 (13%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+       + ACS +  L  GRQ+H  + K    S +  E+AL+DMY+KCG V +A ++
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+     D +  + ++  + + G  +EA+ LF +M K G    P+ V+ V          
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA--PDQVTLVT--------- 264

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
                                   +I+  +  G L+ +  +  +M   ++V+WN++I+  
Sbjct: 265 ------------------------IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGH 300

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G  F  L LY++M+  G+ PT  TF S+L A +++    +G + + +   +H +   
Sbjct: 301 AQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ-MHAAAVMHGLDAN 359

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
               + ++++  + G   +A++  + +  + ++++W A+L
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFD-LSCEKNIVMWNAML 398


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/601 (31%), Positives = 324/601 (53%), Gaps = 12/601 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S LLS+     H   G  +H   +K    FD+           + N+LL  Y   
Sbjct: 361 NSTTVSTLLSVLGDVDHQKWGRGIHGLVVKM--GFDS--------VVCVCNTLLRMYAGA 410

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +   A  +F  MP +D +SWN++++ F+ +G      G     +  G   ++  +FT  
Sbjct: 411 GRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG-KSVNYVTFTSA 469

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L+AC   E     +++H LV + G  +   +GNAL++ Y K G  S+ R+V  +M  R+V
Sbjct: 470 LAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDV 529

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHG 281
           + W A+I G  +N+  ++ L  F  + +  ++ N +T +S + AC     L E G+ +H 
Sbjct: 530 VAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHA 589

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +     +SD  ++++L+ MY+KCG +  +  +F   +    ++   IL   A +G  EE
Sbjct: 590 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEE 649

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            ++L  KM   G+ +D    S  L        L  G+Q+H L +K  F  + F+ N   +
Sbjct: 650 VLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAAD 709

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG++ + +K+      R+  SWN +I+A  RHG   +  E + EM   G++P  VT
Sbjct: 710 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGHVT 769

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SLL ACSH GLV++G+ +   + +   + P  EH  CV+D++GR+G L EA +FI +M
Sbjct: 770 FVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 829

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+ LVW++LL +C IH D + G+ AAE L   +P+  + ++L +N+++ +GRW++  
Sbjct: 830 PMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWEDVE 889

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              K+M    + K+   SW++++ +V SF + D+ HPQ   I+  L ++ +L+ + GYV 
Sbjct: 890 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 949

Query: 642 N 642
           +
Sbjct: 950 D 950



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 160/500 (32%), Positives = 254/500 (50%), Gaps = 17/500 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y K  +++ A  LFD MP+R+ VSWNTM+SG +R G +  G  FF++  +LG  
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLG-- 154

Query: 153 QLDQASFTI--ILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            +  +SF I  +++AC RS  +      +H  V   G   +V V  A++  Y   G  S 
Sbjct: 155 -IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 213

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI--NPNSLTYLSSVMAC 267
            RKVF EM  RNV++WT+++ G       EE + ++  M    +  N NS++ +  + +C
Sbjct: 214 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLV--ISSC 271

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L+    GRQI G + K  L+S L +E++L+ M+   G+V+ A  IF    E D +S  
Sbjct: 272 GLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWN 331

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            I+  +AQNG  EE+ ++F  M +   E++   VS +L V G       G+ IH L++K 
Sbjct: 332 SIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKM 391

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F S   V N L+ MY+  G  E++  VF +M  ++ +SWNS++A+F   G    AL + 
Sbjct: 392 GFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGIL 451

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M   G     VTF S L AC      +KG   L  +  V  +         +V M G+
Sbjct: 452 CSMIRTGKSVNYVTFTSALAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGK 510

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G +  +R  + +MP + DV+ W AL+G  + + D +    A + L +      A YI +
Sbjct: 511 IGGMSTSRRVLLQMP-RRDVVAWNALIGGYAENEDPDKALAAFQTLRV--EGVSANYITV 567

Query: 568 ANIYSCS---GRWKERAKAI 584
            ++ S     G   ER K +
Sbjct: 568 VSVLSACLVPGDLLERGKPL 587



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+ +H+L +K     +    N LINMY+K G ++ +  +F +M  RN VSWN+M++   R
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-LVNKGMEFLKSMTEVHRISPRA 495
            G   + +E +++M   G++P+     SL+ AC   G +  +G++    + +   +S   
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 196

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              A ++ + G  GL+  +R   E MP + +V+ W +L+   S  G+ E
Sbjct: 197 VSTA-ILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSDKGEPE 243


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 312/560 (55%), Gaps = 12/560 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   + NA  LFD+MP RD  SWN M+SG+ ++G           +L  G   
Sbjct: 190 SLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEAL-----TLSDGLRA 244

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   +LSAC  +        IH      G E E+ V N LI  Y + GS    +KV
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKV 304

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M VR++I+W ++I     N+     + LF +M L  I P+ LT +S     S L  +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEI 364

Query: 274 CEGRQIHGI-LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              R + G  L K     D+ I +A++ MY+K G V+ A  +F +    D +S   I+ G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISG 424

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +AQNGF  EA++++  M + G EI  N  +  +VL       +L  G ++H  ++K+   
Sbjct: 425 YAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 484

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   L +MY KCG L+D++ +F ++   NSV WN++IA    HG+G KA+ L++EM
Sbjct: 485 LDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 544

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             EGV+P  +TF++LL ACSH GLV++G    + M   + I+P  +HY C+VD+ GRAG 
Sbjct: 545 LDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQ 604

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L  A +FI+ MP++PD  +W ALL AC +HG+ ++GK A+E LF  +P+    ++L++N+
Sbjct: 605 LEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNM 664

Query: 571 YSCSGRWK--ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           Y+ +G+W+  +  ++I   K  G+ K  G S +E++ +V  F   ++ HP  + ++  L 
Sbjct: 665 YASAGKWEGVDEIRSITSGK--GLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 722

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   +   GYVP+ RF+L 
Sbjct: 723 ALHEKLKMVGYVPDHRFVLQ 742



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 225/469 (47%), Gaps = 18/469 (3%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDM 138
           V N      I   L++ Y     +  A   FD +  RD  +WN M+SG+ R G   E   
Sbjct: 79  VSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIR 138

Query: 139 GFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
            F  F  S  L   Q D  +F  +L AC           IHCL    G+  +V V  +LI
Sbjct: 139 CFSLFMLSSGL---QPDYRTFPSVLKACRNVT---DGNKIHCLALKFGFMWDVYVAASLI 192

Query: 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
             Y + G+  + R +F EM  R++ +W A+ISG  Q+   +E L L      GL   +S+
Sbjct: 193 HLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL----SDGLRAMDSV 248

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T +S + AC+       G  IH    K  L+S+L + + L+D+Y++ GS++D  ++F+  
Sbjct: 249 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRM 308

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D +S   I+  +  N     A+ LF +M  + I+ D   + ++  +      +   +
Sbjct: 309 YVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACR 368

Query: 379 QIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
            +    ++   F  +  + N ++ MY+K G ++ +  VF+ +  ++ +SWN++I+ +A++
Sbjct: 369 SVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQN 428

Query: 438 GNGFKALELYEEMKLEG--VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           G   +A+E+Y  M+ EG  +     T++S+L ACS  G + +GM+    + + + +    
Sbjct: 429 GFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDV 487

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
                + DM G+ G L +A S   ++P + + + W  L+     HG  E
Sbjct: 488 FVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGE 535



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 209/430 (48%), Gaps = 24/430 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V +  LLS   + G F+ G ++H+  IK          + + +   + N L+  Y +   
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIK----------HGLESELFVSNKLIDLYAEFGS 297

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +++  K+FD M +RD +SWN+++  +  N +       F+   E+   ++     T+I  
Sbjct: 298 LKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQ---EMRLSRIQPDCLTLISL 354

Query: 165 ACDRSELSLVS--KMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           A   S+L  +   + +       G + E++T+GNA++  Y K G   S R VF  +  ++
Sbjct: 355 ASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKD 414

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQI 279
           VI+W  +ISG  QN    E ++++  M    G I+ N  T++S + ACS   AL +G ++
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKL 474

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG L K  L  D+ + ++L DMY KCG ++DA  +F     ++ V    ++     +G  
Sbjct: 475 HGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHG 534

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
           E+A+ LF +M+  G++ D      +L        +  G+    + +++D+   P + +  
Sbjct: 535 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEM-MQTDYGITPSLKHYG 593

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            ++++Y + G LE ++     M  +   S W ++++A   HGN     ++  E   E VE
Sbjct: 594 CMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGN-VDLGKIASEHLFE-VE 651

Query: 457 PTDVTFLSLL 466
           P  V +  LL
Sbjct: 652 PEHVGYHVLL 661



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 181/379 (47%), Gaps = 31/379 (8%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +K +H  + +    + V +   L+  Y   G+ +  R  F  +  R+V  W  +ISG  +
Sbjct: 70  AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGR 129

Query: 235 NQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
                E ++ F    L   + P+  T+ S + AC   + + +G +IH +  K     D+ 
Sbjct: 130 AGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVY 186

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+ +Y + G+V +A  +F+     D  S   ++ G+ Q+G  +EA+ L       G
Sbjct: 187 VAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL-----SDG 241

Query: 354 IE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           +  +D   V ++L           G  IHS  IK    S  FV+N LI++Y++ G L+D 
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDC 301

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL------- 465
            KVF RM  R+ +SWNS+I A+  +    +A+ L++EM+L  ++P  +T +SL       
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 466 --LHACSHV-GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
             + AC  V G   +   FL+ +T  +           VV M  + GL+  AR+    +P
Sbjct: 362 GEIRACRSVQGFTLRKGWFLEDITIGN----------AVVVMYAKLGLVDSARAVFNWLP 411

Query: 523 VKPDVLVWQALLGACSIHG 541
            K DV+ W  ++   + +G
Sbjct: 412 NK-DVISWNTIISGYAQNG 429



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 136/272 (50%), Gaps = 15/272 (5%)

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ LQ+    + +H  L       ++CI + L+++Y   G+V  A   F+     D  + 
Sbjct: 64  CTNLQS---AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAW 120

Query: 327 TVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            +++ G+ + G+  E ++ F + M+ +G++ D     +VL      T    G +IH L +
Sbjct: 121 NLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLAL 177

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F  + +V   LI++Y + G + ++  +F  M  R+  SWN+MI+ + + GN  +AL 
Sbjct: 178 KFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT 237

Query: 446 LYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           L      +G+   D VT +SLL AC+  G  N+G+  + S +  H +         ++D+
Sbjct: 238 LS-----DGLRAMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDL 291

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
               G L + +   +RM V+ D++ W +++ A
Sbjct: 292 YAEFGSLKDCQKVFDRMYVR-DLISWNSIIKA 322



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +  V  +F   T+L   K +H+ ++ S+   N  ++  L+N+Y   G++  +   F  + 
Sbjct: 54  IDDVHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIH 113

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNK-- 477
            R+  +WN MI+ + R G   + +  +    L  G++P   TF S+L AC +V   NK  
Sbjct: 114 NRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIH 173

Query: 478 --GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
              ++F   M +V+ ++    H  C      R G ++ AR   + MP + D+  W A++ 
Sbjct: 174 CLALKF-GFMWDVY-VAASLIHLYC------RYGAVVNARILFDEMPTR-DMGSWNAMIS 224

Query: 536 ACSIHGDSE 544
                G+++
Sbjct: 225 GYCQSGNAK 233


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/584 (34%), Positives = 316/584 (54%), Gaps = 19/584 (3%)

Query: 65  SLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
           SLHAS +K+   P              +  SL++ Y     + +A  LF      +   W
Sbjct: 22  SLHASILKSHLHPH-------------LCTSLIAQYASLGSISHAYALFSTSHSSNVFLW 68

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N ++  F            + R L+LG  Q    +F  +L AC       +    H  V 
Sbjct: 69  NHIIRAFSNTPHSRNSLRLYSRMLQLGI-QATNFTFPFLLKACGCLADFELGARAHAHVV 127

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
           + GYE +V V N+L+  Y + G     R+VF  M  RNV++W++++     N  YEEGL 
Sbjct: 128 VFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLL 187

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
           LF +M    I PN  + +++ MAC  +    E      ++    L SD  +++A M MY+
Sbjct: 188 LFWRMLNEGIAPNRGSIVNA-MAC--IHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYA 244

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           +CG ++ A + F    + D V+ T ++  + Q      A++LF +M   GI  D   + +
Sbjct: 245 RCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLS 304

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           ++       S  L + +H +I +S F ++  ++  +I++Y KCG+LE + K F RM+ RN
Sbjct: 305 LIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARN 364

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            +SW++MI+ +  HG+G +AL L+++MK   ++P  + F+ +L ACSH GL+ +G E  K
Sbjct: 365 LISWSTMISGYGMHGHGREALCLFDQMK-ASIKPDHIAFVMVLSACSHGGLIAEGWECFK 423

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           +M     ++PR EHYAC+VD++GRAG L EA++FIERMP+ PD  VW ALLGAC IH + 
Sbjct: 424 AMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNL 483

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E  + AA  LF    ++P  YIL++NIY+ SG+ KE       MK  GV K  G + IEI
Sbjct: 484 ETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEI 543

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + +V++FV  D  +PQ D I+  L +L+  + + GYVP+  F L
Sbjct: 544 KNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDLSFKL 587


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/486 (34%), Positives = 283/486 (58%), Gaps = 1/486 (0%)

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           ++AC         + +H  +    Y   V +G  L+T Y +CG+    R V   M  R+V
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++WT +ISG  Q + + E L LF+KM      PN  T  + + +CSG Q++ +G+Q+H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           L K   +S + + S+L+DMY+K  ++++A ++F+   E D VS T I+ G+AQ G +EEA
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF ++   G++ +    + ++       SL  GKQ+H+LI++ +      + N LI+M
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG L  S +VF  M  R+ VSWN+M+  + RHG G + + L++++  E V+P  VT 
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTL 315

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L++L  CSH GLV++G++   ++ +         HY C++D++GR+G L +A + IE MP
Sbjct: 316 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
            +    +W +LLGAC +H +  +G+  A+KL   +P++   Y++++NIY+ +G WK+  K
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 435

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K M E  V KE G SWI ++K +H+F   ++ HP    I+  + E+   +   G+VP+
Sbjct: 436 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 495

Query: 643 KRFILH 648
              +LH
Sbjct: 496 LSCVLH 501



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 185/360 (51%), Gaps = 16/360 (4%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           A  +   L++ Y++C  + +A  + D MP R  VSW TM+SG+ +          F + L
Sbjct: 44  AVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML 103

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G    ++ +   +L++C   +     K +H L+    +E  + VG++L+  Y K  + 
Sbjct: 104 RAGCIP-NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENI 162

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF  +  R+V++ TA+ISG  Q  L EE L LF +++   +  N +T+ + V A 
Sbjct: 163 QEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 222

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           SGL +L  G+Q+H ++ +  L   + ++++L+DMYSKCG +  + ++F+   E   VS  
Sbjct: 223 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 282

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLI 384
            +L+G+ ++G   E + LF  + K   E+ P+ V+ +L V    +  GL   G  I   +
Sbjct: 283 AMLMGYGRHGLGHEVISLFKDLHK---EVKPDSVT-LLAVLSGCSHGGLVDEGLDIFDTV 338

Query: 385 IKSDFTSNPFVNNG----LINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           +K     +  ++ G    +I++  + G LE ++ +   M   ++ S W S++ A   H N
Sbjct: 339 VKE---QSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 395



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 160/288 (55%), Gaps = 14/288 (4%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           Y +++ AC   +AL EGRQ+H  +     +  + + + L+ MY +CG+++DA  + +   
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E   VS T ++ G++Q     EA+ LF+KM++AG   +   ++ VL       S+  GKQ
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +HSL++K++F S+ FV + L++MY+K  +++++ +VF  +  R+ VS  ++I+ +A+ G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE--- 496
             +AL+L+ ++  EG++   VTF +L+ A S       G+  L    +VH +  R E   
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALS-------GLASLDYGKQVHALILRKELPF 245

Query: 497 ---HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                  ++DM  + G L+ +R   + M ++  V+ W A+L     HG
Sbjct: 246 FVALQNSLIDMYSKCGKLLYSRRVFDNM-LERSVVSWNAMLMGYGRHG 292



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           + N   ++ +L+  +     + G  +H+  +KT          N  +   + +SLL  Y 
Sbjct: 108 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKT----------NFESHMFVGSSLLDMYA 157

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K + ++ A ++FD +P RD VS   ++SG+ + G  +     F++    G  Q +  +FT
Sbjct: 158 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM-QCNHVTFT 216

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +++A          K +H L+        V + N+LI  Y KCG     R+VF  M  R
Sbjct: 217 TLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 276

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V++W A++ G  ++ L  E + LF  +H   + P+S+T L+ +  CS    + EG  I 
Sbjct: 277 SVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 335

Query: 281 GILWKLALQSDLCIE---SALMDMYSKCGSVEDAWQIFE 316
             + K   QS L        ++D+  + G +E A  + E
Sbjct: 336 DTVVK--EQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 324/635 (51%), Gaps = 49/635 (7%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLS 97
           ++  +NY     L + SA   H H G ++H   I      D            +  +LL 
Sbjct: 120 RVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQAD----------LFVSTALLD 168

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y+KC  + +A  +F  MP RD V+WN M++G+  +G +         S+++  ++L   
Sbjct: 169 MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLL-SMQMQMHRLRPN 227

Query: 158 SFTII----------------------LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           + T++                      + AC  S  +  SK+           + V +G 
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLT----------DGVLLGT 277

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGL 252
           AL+  Y KCGS    R+VF  M  RN +TW+A+I G V      +   LF  M    L  
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           ++P S+   S++ AC+ L  L  G Q+H +L K  + +DL   ++L+ MY+K G ++ A 
Sbjct: 338 LSPTSIA--SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 395

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F+     D VS + ++ G+ QNG  EEA  +F KM    +E D   + +++       
Sbjct: 396 ALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLA 455

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  G+  H  +I     S   + N LI+MY+KCG ++ S +VF+ M  R+ VSWN+MIA
Sbjct: 456 ALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA 515

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            +  HG G +A  L+ EM   G  P  VTF+ LL ACSH GLV +G  +   M   + ++
Sbjct: 516 GYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLT 575

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           PR EHY C+VD++ R G L EA  FI+ MP++ DV VW ALLGAC ++ + ++GK  +  
Sbjct: 576 PRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRM 635

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           +    P+    ++L++NIYS +GR+ E A+     K  G  K  G SWIEI   +H+FV 
Sbjct: 636 IQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVG 695

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            D+ HPQ+  I+  L  +L  +   GY P+  F+L
Sbjct: 696 GDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVL 730



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 169/367 (46%), Gaps = 33/367 (8%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ--LYEEGLKLFVKMHLGLINPNSL 258
           +   G  S    +F ++   +V T+  +I     +      +GL L+ +M    + PN+ 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T+  ++ ACS L     GR IH       LQ+DL + +AL+DMY KC  + DA  IF   
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGL 376
              D V+   +L G+A +G    A+   + M      + PN  +  A+L +     +L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 377 GKQIHSLII----------KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           G  +H+  I          KS  T    +   L++MY+KCG L  + +VF  M  RN V+
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEG---VEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
           W+++I  F       +A  L++ M  +G   + PT +   S L AC+        ++ L+
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA-------SLDHLR 357

Query: 484 SMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              ++H +  ++  +A       ++ M  +AGL+ +A +  + M VK D + + AL+   
Sbjct: 358 MGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGY 416

Query: 538 SIHGDSE 544
             +G +E
Sbjct: 417 VQNGRAE 423


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/595 (33%), Positives = 317/595 (53%), Gaps = 25/595 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG ++HA  ++T         ++ P  + + N L++ Y K D   +A  +      R  V
Sbjct: 25  LGRAVHAHILRT---------HDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVV 75

Query: 122 SWNTMVSGFLRNGEFD---MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           +W +++SG + N  F    + F   +R   L     +  +F  +  A     + +  K +
Sbjct: 76  TWTSLISGCVHNRRFTSALLHFSNMRRECVLP----NDFTFPCVFKASASLHMPVTGKQL 131

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L    G   +V VG +    Y K G     R +F EM  RN+ TW A +S  VQ+   
Sbjct: 132 HALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRC 191

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            + +  F K       PN++T+ + + AC+ + +L  GRQ+HG + +   + D+ + + L
Sbjct: 192 LDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGL 251

Query: 299 MDMYSKCGSVEDAWQIFEF--AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +D Y KCG +  +  +F    +   + VS   +L    QN  EE A  +F++  K   E+
Sbjct: 252 IDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARK---EV 308

Query: 357 DPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           +P   M+S+VL        L LG+ +H+L +K+    N FV + L+++Y KCG +E + +
Sbjct: 309 EPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTDVTFLSLLHACSHV 472
           VF  M  RN V+WN+MI  +A  G+   AL L++EM     G+  + VT +S+L ACS  
Sbjct: 369 VFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRA 428

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G V +G++  +SM   + I P AEHYACVVD++GR+GL+  A  FI+RMP+ P + VW A
Sbjct: 429 GAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGA 488

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LLGAC +HG +++GK AAEKLF   PD    +++ +N+ + +GRW+E     K M+++G+
Sbjct: 489 LLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGI 548

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            K  G SW+ ++ +VH F   D  H +   I  +LA+L   M   GYVP+    L
Sbjct: 549 KKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSL 603



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 40/278 (14%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIK-V 415
           PN++ + L    +  S  LG+ +H+ I+++  T  P F+ N L+NMYSK  DL +S + V
Sbjct: 7   PNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKL-DLPNSAQLV 65

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
            S   PR  V+W S+I+    +     AL  +  M+ E V P D TF  +  A + + + 
Sbjct: 66  LSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMP 125

Query: 476 NKGMEFLKSMTEVHRISPRAEH-----YAC-VVDMVGRAGLLIEARSFIERMPVKPDVLV 529
             G        ++H ++ +  +       C   DM  + GL  EAR+  + MP + ++  
Sbjct: 126 VTG-------KQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHR-NLAT 177

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W A +   ++     +   AA K FL     P      A + +C+               
Sbjct: 178 WNAYMSN-AVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACA--------------- 221

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
                   I  +E+ +Q+H F+V  +        +G++
Sbjct: 222 -------DIVSLELGRQLHGFIVRSRYREDVSVFNGLI 252


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/558 (34%), Positives = 309/558 (55%), Gaps = 26/558 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF-----FKR 145
           I N+L++ Y +   +  A ++FD+MP RD VSWN M+SG+ + G+    +G      F  
Sbjct: 212 IGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKC---YGLEAVLLFVN 268

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +  G   +D  S T  +SAC   +   + + IH L    GY   V+V N L+++Y KC 
Sbjct: 269 MVRHGML-IDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCE 327

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                + VF  +  RNV++WT +IS        E+ + LF  M +  + PN +T++  + 
Sbjct: 328 VPKDAKAVFESISNRNVVSWTTMIS-----IDEEDAVSLFNAMRVNGVYPNDVTFIGLIH 382

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A +    + EG  IHG+  K    S+  + ++ + MY+K   ++++ +IFE     + VS
Sbjct: 383 AVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKIFEELNCRETVS 442

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGV--DTSLGLGKQIH 381
              ++ G+AQNG  +EA+  ++  VK   EI PN  +  +VL       D SL  GK  H
Sbjct: 443 WNALISGYAQNGSYKEALLTYLSAVK---EIKPNQYTFGSVLNAIAAAEDISLNHGKSCH 499

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           S ++K    ++P V+  L++MY K GD+ +S +VF+    R   +W ++I+A+ARHG+  
Sbjct: 500 SHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFE 559

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
             + LY EM+ EG+ P  +TFLS+L AC   G+V+ G     SM + H I P +EHY+ +
Sbjct: 560 SVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGHRVFDSMVKKHSIEPTSEHYSIM 619

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VDM+GR G L EA   + ++P  P + V Q+LLG+C +HG+ EM +    +L    P S 
Sbjct: 620 VDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASS 679

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK----QVHSFVVDDKMH 617
            PY+LMAN+Y+  G+W++ A+  + M+  GV KE G SW+++       +H F   DK H
Sbjct: 680 GPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFSWVDVSNVDSLYLHGFSSGDKSH 739

Query: 618 PQADTIHGVLAELLRLMI 635
           P+++ I  + AE L L +
Sbjct: 740 PESENICKI-AEFLGLQM 756



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 167/532 (31%), Positives = 262/532 (49%), Gaps = 40/532 (7%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHA-SFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           L+N  +++  LS+ A +G   LG  +H  +    F  F             + NSL+  Y
Sbjct: 74  LENVDEVTVALSLKACQGESKLGCQIHGFAVCSGFVSF-----------VTVSNSLMKMY 122

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            K      A+ +F+++   D VSWNT++SGF    E  +    F RS+       D  ++
Sbjct: 123 CKSGNFGKALIVFENLSHPDIVSWNTVLSGF----EESVDALNFARSMHYCGIAFDPVTY 178

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           T  L+ C      L    +H LV  CG   EV +GNAL+T Y + G     R+VF EM  
Sbjct: 179 TSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPE 238

Query: 220 RNVITWTAVISGLVQ-NQLYE-EGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQALCE 275
           R++++W A+ISG  Q  + Y  E + LFV M  H  LI+  SLT   +V AC  ++ L  
Sbjct: 239 RDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLT--GAVSACGHMKNLEL 296

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           GRQIHG+  K+   + + + + LM  YSKC   +DA  +FE     + VS T ++     
Sbjct: 297 GRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMI----- 351

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           +  EE+A+ LF  M   G+   PN V+   ++    +   +  G  IH L IKS F S  
Sbjct: 352 SIDEEDAVSLFNAMRVNGVY--PNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQ 409

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V+N  I MY+K   +++S K+F  +  R +VSWN++I+ +A++G+  +AL  Y     E
Sbjct: 410 TVSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVKE 469

Query: 454 GVEPTDVTFLSLLHACSHVGLV--NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
            ++P   TF S+L+A +    +  N G      + ++  +         ++DM G+ G +
Sbjct: 470 -IKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKL-GLGTDPIVSGALLDMYGKRGDI 527

Query: 512 IEA-RSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAEKLFLAQPDS 560
           IE+ R F E +  +     W A++ A + HGD E  M  Y   +     PDS
Sbjct: 528 IESQRVFNETL--ERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDS 577


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/583 (33%), Positives = 316/583 (54%), Gaps = 39/583 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+L+ Y K   + +A++ F+DM  RD VSWN M++   ++G      G        G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV- 266

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  ++T  L+AC R       K +H  V     + +  V +ALI  Y KCGS    ++
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  ++ RN ++WT +I G +Q + + + ++LF +M   L+  +     + +  C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           LC GRQ+H +  K      + + ++L+ +Y+KCG +++A  +F    E D VS T ++  
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 446

Query: 333 FA-------------------------------QNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           ++                               Q+G EE+ ++++  M+    ++ P+ V
Sbjct: 447 YSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK-DVTPDWV 505

Query: 362 SAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + V  +F     +G   LG QI    +K+    N  V N  I MYSKCG + ++ K+F  
Sbjct: 506 TYVT-LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 564

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ VSWN+MI  +++HG G +A + +++M  +G +P  ++++++L  CSH GLV +G
Sbjct: 565 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +   MT VH ISP  EH++C+VD++GRAG L EA+  I++MP+KP   VW ALL AC 
Sbjct: 625 KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACK 684

Query: 539 IHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           IHG+ E+ + AA+ +F L  PDS   Y+L+A IYS +G+  + A+  K M++ G+ K  G
Sbjct: 685 IHGNDELAELAAKHVFELDSPDS-GSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPG 743

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            SW+E+E +VH F  DD  HPQ   I   L EL+  +   GYV
Sbjct: 744 YSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYV 786



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 257/554 (46%), Gaps = 71/554 (12%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  +  N +++ Y K   + +A +LFD MP RD  SWNT++SG+ +   F  G   F  
Sbjct: 69  PN-VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
               G    +  +F  ++ +C       ++  +  L +   +  +  V  AL+  + +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 206 SSSSGRKVFGE-------------------------------MRVRNVITWTAVISGLVQ 234
                 ++F +                               M  R+V++W  +I+ L Q
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           +    E L L V+MH   +  +S TY SS+ AC+ L +L  G+Q+H  + +   Q D  +
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL+++Y+KCGS ++A ++F   ++ + VS TV++ G  Q     ++++LF +M    +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            ID   ++ ++        L LG+Q+HSL +KS       V+N LI++Y+KCGDL+++  
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-------------------- 454
           VFS M+ R+ VSW SMI A+++ GN  KA E ++ M                        
Sbjct: 428 VFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDG 487

Query: 455 ------------VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
                       V P  VT+++L   C+ +G    G + +    +   I   +   A + 
Sbjct: 488 LKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAIT 547

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL--FLAQPDS 560
            M  + G + EA+   + +  K DV+ W A++   S HG   MGK AA+     L++   
Sbjct: 548 -MYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAK 602

Query: 561 PAPYILMANIYSCS 574
           P     +A +  CS
Sbjct: 603 PDYISYVAVLSGCS 616



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 204/453 (45%), Gaps = 78/453 (17%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E  V   N ++  Y K GS S   ++F  M  R+V +W  ++SG  Q + + +GL+ FV 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 248 MHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           MH  G   PN+ T+   + +C  L       Q+ G+ WK     D  +E+AL+DM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 307 -------------------------------SVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
                                           ++ A + FE   E D VS  +++   +Q
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +G   EA+ L V+M + G+ +D    ++ L       SLG GKQ+H+ +I+S    +P+V
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            + LI +Y+KCG  +++ +VF+ +  RNSVSW  +I    ++    K++EL+ +M+ E +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 456 EPTDVTFLSLLHAC-----------------------------SHVGLVNK-----GMEF 481
                   +L+  C                             S + L  K       EF
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 482 L-KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  SM+E   +S     +  ++    + G +I+AR F + M  + + + W A+LGA   H
Sbjct: 428 VFSSMSERDIVS-----WTSMITAYSQIGNIIKAREFFDGMDTR-NAITWNAMLGAYIQH 481

Query: 541 GDSEMG--KYAAEKLFLAQPDSPAPYILMANIY 571
           G  E G   Y+A    L+Q D    ++    ++
Sbjct: 482 GAEEDGLKMYSA---MLSQKDVTPDWVTYVTLF 511



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W S+++ Y +   +  A + FD M  R+ ++WN M+  ++++G  + G   +   L  
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  ++  +   C     + +   I       G    V+V NA IT Y KCG  S 
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 557

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F  +  ++V++W A+I+G  Q+ + ++  K F  M      P+ ++Y++ +  CS 
Sbjct: 558 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 270 LQALCEGR-------QIHGI 282
              + EG+       ++HGI
Sbjct: 618 SGLVQEGKLYFDMMTRVHGI 637



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 70/340 (20%)

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-AEEL 321
           ++ +C    AL   R +HG L  + L S + +++ L+  Y  CG++ DA ++     +E 
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE---------------ID--------- 357
           + ++  +++ G+A+ G   +A +LF +M +  +                +D         
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 358 ------PNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG-- 407
                 PN  +   V+   G      L  Q+  L  K DF  +P V   L++M+ +CG  
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 408 -----------------------------DLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
                                         ++ +I+ F  MA R+ VSWN MIAA ++ G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              +AL L  EM  +GV     T+ S L AC+ +  +  G +      +V R  P+ + Y
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL---HAKVIRSLPQIDPY 306

Query: 499 --ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             + ++++  + G   EA+     +  +  V  W  L+G 
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSLQDRNSV-SWTVLIGG 345


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 286/501 (57%)

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           LE   Y +  +++  ++SAC         K +   +   G+E ++ V N ++  + KCG 
Sbjct: 109 LEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGL 168

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               RK+F EM  ++V +W  ++ GLV    + E  +LF+ M     +  S T+ + + A
Sbjct: 169 MLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRA 228

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            +GL  +  G+QIH    K  +  D  +  AL+DMYSKCGS+EDA  +F+   E   V  
Sbjct: 229 SAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGW 288

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+  +A +G+ EEA+ L+ +M  +G  +D   +S V+ +     SL   KQ H+ +++
Sbjct: 289 NSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVR 348

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F ++   N  L++ YSK G +ED+  VF+RM  +N +SWN++IA +  HG G +A+E+
Sbjct: 349 HGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEM 408

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E+M  EGV PT VTFL++L ACS+ GL  +G E   SM   H++ PRA HYAC+++++G
Sbjct: 409 FEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLG 468

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R  LL EA + I   P KP   +W ALL AC +H + E+GK AAEKL+  +P+    YI+
Sbjct: 469 RESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIV 528

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           + N+Y+ SG+ KE A  ++ +K+ G+      SW+E++KQ ++F+  DK H Q   I+  
Sbjct: 529 LLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQK 588

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           +  L+  +   GY      +L
Sbjct: 589 VDNLMVEICKHGYAEENETLL 609



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 185/406 (45%), Gaps = 18/406 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N +L  ++KC  M +A KLFD+MP +D  SW TMV G +  G F   F  F   +   
Sbjct: 155 VMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLF-LCMWKE 213

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F      +F  ++ A     L  V K IH      G  ++  V  ALI  Y KCGS    
Sbjct: 214 FNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDA 273

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF +M  +  + W ++I+    +   EE L L+ +M       +  T    +  C+ L
Sbjct: 274 HCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARL 333

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   +Q H  L +    +D+   +AL+D YSK G +EDA  +F      + +S   ++
Sbjct: 334 ASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALI 393

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSD 388
            G+  +G  +EA+++F +M++ G  + P  V+  L V    +  GL ++   +   +K D
Sbjct: 394 AGYGNHGQGQEAVEMFEQMLQEG--VTPTHVT-FLAVLSACSYSGLSQRGWEIFYSMKRD 450

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFARHGNGFKAL 444
               P   +   +I +  +   L D      R AP    +  W +++ A   H N    L
Sbjct: 451 HKVKPRAMHYACMIELLGR-ESLLDEAYALIRTAPFKPTANMWAALLTACRMHKN----L 505

Query: 445 ELYE--EMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTE 487
           EL +    KL G+EP  +  ++ LL+  +  G + +    L+++ +
Sbjct: 506 ELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKK 551


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 305/560 (54%), Gaps = 14/560 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           SL++ Y KC  + +++++F+  P    ++  ++N +++GFL N         + +   LG
Sbjct: 69  SLINMYSKCSLIDHSLRVFN-FPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLG 127

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ +F  ++ AC   +   V   IH L++  G E +V VG+AL+ +Y K       
Sbjct: 128 IAP-DKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEA 186

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +VF E+ VR+V+ W A+++G  Q   +EE L +F +M    + P   T    +   S +
Sbjct: 187 YRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVM 246

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                GR +HG + K+  +S + + +AL+DMY KC  V DA  +FE  +E+D  S   I+
Sbjct: 247 GDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIM 306

Query: 331 VGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII---- 385
               + G     ++LF +M+ +  ++ D   V+ VL       +L  G++IH  ++    
Sbjct: 307 SVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGL 366

Query: 386 ----KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
                 D   +  +NN L++MY+KCG++ D+  VF  M  ++  SWN MI  +  HG G 
Sbjct: 367 AKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGG 426

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL+++  M    + P +++F+ LL ACSH G+V +G+ FL  M   + +SP  EHY CV
Sbjct: 427 EALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCV 486

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           +DM+ RAG L+EA   +  MP K D + W++LL AC +H D+++ + AA K+   +PD  
Sbjct: 487 IDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHC 546

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+LM+N+Y   GR++E  +    MK+  V K  G SWIE+   VH F+  D+ HPQ +
Sbjct: 547 GNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDRTHPQTE 606

Query: 622 TIHGVLAELLRLMIDEGYVP 641
            I+  L  L  ++ + GYVP
Sbjct: 607 YIYAGLNSLTAVLQEHGYVP 626



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 190/372 (51%), Gaps = 36/372 (9%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L++ YLK   +  A ++F+++P+RD V WN MV+GF + G F+   G F+R   +G
Sbjct: 169 VGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRR---MG 225

Query: 151 FYQLDQASFTIILSACDRSELSLVSKM--------IHCLVYLCGYEEEVTVGNALITSYF 202
              +    +T+         LS+ S M        +H  V   GYE  V V NALI  Y 
Sbjct: 226 GNGVVPCRYTVT------GVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYG 279

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTY 260
           KC        VF  M   ++ +W +++S   +   +   L+LF +M +G   + P+ +T 
Sbjct: 280 KCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRM-MGSSRVQPDLVTV 338

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQ--------SDLCIESALMDMYSKCGSVEDAW 312
            + + AC+ L AL  GR+IHG +    L          D+ + +ALMDMY+KCG++ DA 
Sbjct: 339 TTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDAR 398

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F    E D  S  +++ G+  +G+  EA+ +F +M +A  ++ PN +S V G+    +
Sbjct: 399 MVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQA--QMVPNEISFV-GLLSACS 455

Query: 373 SLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSW 427
             G+ K+    +  ++S +  +P + +   +I+M  + G L ++  +   M  + + V W
Sbjct: 456 HAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGW 515

Query: 428 NSMIAAFARHGN 439
            S++AA   H +
Sbjct: 516 RSLLAACRLHND 527



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 15/310 (4%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T ++++ +C+    L +G+++H  L K A        ++L++MYSKC  ++ + ++F F 
Sbjct: 31  TCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFP 90

Query: 319 EELDG--VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              +    +   ++ GF  N   + A+ L+ +M   GI  D      V+   G D    +
Sbjct: 91  THHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFV 150

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
             +IH L+ K     + FV + L+N Y K   + ++ +VF  +  R+ V WN+M+  FA+
Sbjct: 151 VTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQ 210

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G   +AL ++  M   GV P   T   +L   S +G  + G      +T++   S    
Sbjct: 211 IGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVV 270

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-- 554
             A ++DM G+   + +A S  E M  + D+  W +++      GD     Y   +LF  
Sbjct: 271 SNA-LIDMYGKCKCVGDALSVFEMMD-EIDIFSWNSIMSVHERCGD----HYGTLRLFDR 324

Query: 555 -----LAQPD 559
                  QPD
Sbjct: 325 MMGSSRVQPD 334



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 128/283 (45%), Gaps = 31/283 (10%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ +LSI +  G F  G ++H    K              +  V+ N+L+  Y KC  + 
Sbjct: 236 VTGVLSIFSVMGDFDNGRAVHGFVTKM----------GYESGVVVSNALIDMYGKCKCVG 285

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A+ +F+ M   D  SWN+++S   R G+       F R +     Q D  + T +L AC
Sbjct: 286 DALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPAC 345

Query: 167 DRSELSLVSKMIHCLVYLCGYEEE--------VTVGNALITSYFKCGSSSSGRKVFGEMR 218
                 +  + IH  + + G  +E        V + NAL+  Y KCG+    R VF  MR
Sbjct: 346 THLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMR 405

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-------GLQ 271
            ++V +W  +I+G   +    E L +F +M    + PN ++++  + ACS       GL 
Sbjct: 406 EKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLG 465

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            L E    +G+    +++   C+    +DM  + G + +A+ +
Sbjct: 466 FLSEMESKYGV--SPSIEHYTCV----IDMLCRAGQLMEAYDL 502


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/588 (32%), Positives = 312/588 (53%), Gaps = 18/588 (3%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           L +SAK      G  LHA  IK          +   +   + N +L  YLKC +  +A K
Sbjct: 57  LKVSAKRALLPEGKQLHAHLIK----------FGFCHVLSLQNQILGVYLKCTEADDAEK 106

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFD-------MGFGFFKRSLELGFYQLDQASFTIIL 163
           LF+++ +R+ VSWN ++ G +  G+ +         F +FKR L L     D  +F  + 
Sbjct: 107 LFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRML-LELVVPDSTTFNGLF 165

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
             C +     +   +HC     G + +  VG+ L+  Y +CG   + R+VF  ++ R+++
Sbjct: 166 GVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLV 225

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            W  +IS    N L EE   +F  M     N +  T+ + +  C  L+    G+Q+HG +
Sbjct: 226 VWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHI 285

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            +L+  SD+ + SAL++MY+K  ++ DA ++F+     + V+   I+VG+       E M
Sbjct: 286 LRLSFDSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVM 345

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +L  +M++ G   D   +S+ + + G  +++    Q H+  +KS F     V N LI+ Y
Sbjct: 346 KLLREMLREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAY 405

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SKCG +  + K F      + VSW S+I A+A HG   +A E++E+M   G+ P  ++FL
Sbjct: 406 SKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFL 465

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L ACSH GLV KG+ +   MT V++I P + HY C+VD++GR GL+ EA  F+  MP+
Sbjct: 466 GVLSACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPM 525

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           + +     A + +C++H +  + K+AAEKLF  +P+    Y +M+NIY+    W +  + 
Sbjct: 526 EAESNTLGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERV 585

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
            + M      +  G SWIEI  QVHSFV +DK+HP+A  +H  L  LL
Sbjct: 586 RRMMGNKCDARVPGCSWIEITNQVHSFVSNDKIHPKALEMHATLKMLL 633


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/492 (35%), Positives = 282/492 (57%), Gaps = 2/492 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +  +L+ C R       + +H  +    Y   V +   LI  Y KC S    R VF  M 
Sbjct: 61  YNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMP 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV++WTA+IS   Q     + L LFV+M      PN  T+ + + +C G      GRQ
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH  + KL  ++ + + S+L+DMY+K G + +A  IF+   E D VS T I+ G+AQ G 
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGL 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA++LF ++ + G++ +    ++VL       +L  GKQ+H+ +++S+  S   + N 
Sbjct: 241 DEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNS 300

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEP 457
           LI+MYSKCG+L  + ++F  +  R  +SWN+M+  +++HG G + LEL+  M  E  V+P
Sbjct: 301 LIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKP 360

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYACVVDMVGRAGLLIEARS 516
             VT L++L  CSH GL +KGM+    MT     + P ++HY CVVDM+GRAG +  A  
Sbjct: 361 DSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFE 420

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           F+++MP +P   +W  LLGACS+H + ++G++   +L   +P++   Y++++N+Y+ +GR
Sbjct: 421 FVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGR 480

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W++       M +  V KE G SWIE+++ +H+F   D  HP+ + +   + EL     +
Sbjct: 481 WEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKE 540

Query: 637 EGYVPNKRFILH 648
            GYVP+   +LH
Sbjct: 541 AGYVPDLSCVLH 552



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 207/403 (51%), Gaps = 19/403 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N+ D + +L+   ++     G  +HA  IKT         + +P    +   L+ FY+KC
Sbjct: 57  NFQDYNTVLNECLRKRAIREGQRVHAHMIKT---------HYLP-CVYLRTRLIVFYVKC 106

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +R+A  +FD MP R+ VSW  M+S + + G        F + L  G  + ++ +F  +
Sbjct: 107 DSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG-TEPNEFTFATV 165

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L++C  S   ++ + IH  +    YE  V VG++L+  Y K G     R +F  +  R+V
Sbjct: 166 LTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDV 225

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++ TA+ISG  Q  L EE L+LF ++    +  N +TY S + A SGL AL  G+Q+H  
Sbjct: 226 VSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNH 285

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           L +  + S + ++++L+DMYSKCG++  A +IF+   E   +S   +LVG++++G   E 
Sbjct: 286 LLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREV 345

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN-- 397
           ++LF  M+    ++ P+ V+ VL V    +  GL   G  I   +     +  P   +  
Sbjct: 346 LELFNLMIDEN-KVKPDSVT-VLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYG 403

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
            +++M  + G +E + +   +M    S + W  ++ A + H N
Sbjct: 404 CVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSN 446



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 162/303 (53%), Gaps = 16/303 (5%)

Query: 248 MHLGL--INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           +H+ L  ++ N   Y + +  C   +A+ EG+++H  + K      + + + L+  Y KC
Sbjct: 47  LHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKC 106

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            S+ DA  +F+   E + VS T ++  ++Q G+  +A+ LFV+M+++G E +    + VL
Sbjct: 107 DSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVL 166

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                 +   LG+QIHS IIK ++ ++ +V + L++MY+K G + ++  +F  +  R+ V
Sbjct: 167 TSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           S  ++I+ +A+ G   +ALEL+  ++ EG++   VT+ S+L A S       G+  L   
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALS-------GLAALDHG 279

Query: 486 TEVHRISPRAEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            +VH    R+E  + VV      DM  + G L  AR   + +  +  V+ W A+L   S 
Sbjct: 280 KQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERT-VISWNAMLVGYSK 338

Query: 540 HGD 542
           HG+
Sbjct: 339 HGE 341


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 298/548 (54%), Gaps = 10/548 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L+  Y +C  +  A ++FD M   D V + +++S F RNGEF++      + L+ G
Sbjct: 151 IGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG 210

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGYEEE-VTVGNALITSYFKCGSSS 208
             + ++ + T IL+AC R    ++ + IH  L+   G   + V    ALI  Y + G   
Sbjct: 211 L-KPNEHTMTTILTACPR----VLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFK 265

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             + VF  +  +NV++W +++   +++   EE L++F  M    ++PN    LS V+   
Sbjct: 266 LAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA-LSIVLGAC 324

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   L  GRQ+H    K  L +D+ + +AL+ MY + G VE+   +    E  D VS T 
Sbjct: 325 GSIGL--GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 382

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
            +    QNGF E+A+ L  +M   G   +    S+VL       SL  G Q H L +K  
Sbjct: 383 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 442

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S     N LINMYSKCG +  +   F  M   +  SWNS+I   A+HG+  KALE++ 
Sbjct: 443 CDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFS 502

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P D TFL +L  C+H G+V +G  F + M + +  +P   HYAC++DM+GR 
Sbjct: 503 KMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRN 562

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G   EA   I  MP +PD L+W+ LL +C +H + ++GK AA++L        A Y+LM+
Sbjct: 563 GRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMS 622

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+  G W++  K  +RM E GV K+ G SWIEI  +VH+F   D  HP +D+I+ +L 
Sbjct: 623 NIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLG 682

Query: 629 ELLRLMID 636
           EL+ +M D
Sbjct: 683 ELVAVMQD 690



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 238/454 (52%), Gaps = 20/454 (4%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           L+  +K  ++ +A+ LFD MP ++ V+W +++SG+ RNG  +     F   +E G    D
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPND 114

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
            A    +++  D   L    + +H L    G+  +  +G+ LI  Y +CGS  + ++VF 
Sbjct: 115 FACNAALVACADLGALR-AGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M   +V+ +T++IS   +N  +E   +  ++M    + PN  T  + + AC  +     
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL---- 229

Query: 276 GRQIHG-ILWKLALQSDLCIES-ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           G+QIHG ++ K+ L+S     S AL+D YS+ G  + A  +F+     + VS   ++  +
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLY 289

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            ++G  EEA+Q+F  M+  G++ +   +S VLG  G   S+GLG+Q+H   IK D  ++ 
Sbjct: 290 IRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITDI 346

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V+N L++MY + G +E+   + +++   + VSW + I+A  ++G G KA+ L  +M  E
Sbjct: 347 RVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSE 406

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAG 509
           G  P    F S+L +C+ V  +++GM+F    LK   +    +  A     +++M  + G
Sbjct: 407 GFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNA-----LINMYSKCG 461

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            +  AR   + M    DV  W +L+   + HGD+
Sbjct: 462 QMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDA 494



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 176/354 (49%), Gaps = 11/354 (3%)

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
           C    +V +    +    K G  +    +F  M  +NV+ WT+V+SG  +N   E  L +
Sbjct: 42  CAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAM 101

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    + PN     ++++AC+ L AL  G Q+H +  +     D  I S L++MYS+
Sbjct: 102 FADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSR 161

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           CGS+  A ++F+  +  D V  T ++  F +NG  E A +  ++M+K G++ + + ++ +
Sbjct: 162 CGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           L          LG+QIH  +IK     + + + +  LI+ YS+ G+ + +  VF  +  +
Sbjct: 222 LTA----CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK 277

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           N VSW SM+  + R G   +AL+++ +M  EGV+P +     +L AC  +GL  +    L
Sbjct: 278 NVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQ----L 333

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                 H +         ++ M GR GL+ E  + + ++   PD++ W   + A
Sbjct: 334 HCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISA 386


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/559 (34%), Positives = 308/559 (55%), Gaps = 5/559 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  YL+  ++  A K+FD+M  RD  +WN M+SG  RN       G F R +  G   
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG 167

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D  + + +L  C      +++ ++H      G ++E+ V NALI  Y K G     + V
Sbjct: 168 -DTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCV 226

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  R+++TW ++ISG  Q       LK+F  M    ++P+ LT +S   A +     
Sbjct: 227 FHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDG 286

Query: 274 CEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              + +H  + +      D+   +A++DMY+K  ++E A ++F+     D VS   ++ G
Sbjct: 287 RSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITG 346

Query: 333 FAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           + QNG   EA++ +  M K  G++       +VL  +    +L  G ++H+L IK     
Sbjct: 347 YMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNV 406

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V   LI++Y+KCG L +++ +F +M  R++  WN++I+    HG+G +AL L+  M+
Sbjct: 407 DVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQ 466

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
            EG++P  VTF+SLL ACSH GLV++G  F   M   + I P A+HYAC+ DM+GRAG L
Sbjct: 467 QEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQL 526

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA +FI+ MP+KPD  VW ALLGAC IHG+ EMGK A++ LF   P++   Y+LM+N+Y
Sbjct: 527 DEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMY 586

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM--HPQADTIHGVLAE 629
           +  G+W    +    ++   + K  G S IE+++ V+ F   ++   HPQ + I   L  
Sbjct: 587 AKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRS 646

Query: 630 LLRLMIDEGYVPNKRFILH 648
           LL  +   GYV +  F+L 
Sbjct: 647 LLAKIRSVGYVSDYSFVLQ 665



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 218/443 (49%), Gaps = 29/443 (6%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           NT+++ F R     + F   +  L   + ++ D  +F  ++ A   +  +  +++  C +
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSN--ASAAQLHACAL 94

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
            L      V    +L+ +Y + G  S   KVF EM  R+V  W A++SGL +N    E +
Sbjct: 95  RLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAV 154

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF +M    +  +++T  S +  C  L        +H    K  L  +L + +AL+D+Y
Sbjct: 155 GLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVY 214

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            K G +E+A  +F   E  D V+   I+ G  Q G    A+++F  M  +G+  D     
Sbjct: 215 GKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPD----- 269

Query: 363 AVLGVFGVDTSLGLG------KQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKV 415
            VL +  + +++  G      K +H  +++  +  +  +  N +++MY+K  ++E + ++
Sbjct: 270 -VLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRM 328

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGL 474
           F  M  ++SVSWN++I  + ++G   +A+E Y  M K EG++    TF+S+L A SH+G 
Sbjct: 329 FDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGA 388

Query: 475 VNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           + +GM  + +++   +I    + Y   C++D+  + G L EA    E+MP +     W A
Sbjct: 389 LQQGMR-MHALSI--KIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMP-RRSTGPWNA 444

Query: 533 LLGACSIHGDSEMGKYAAEKLFL 555
           ++    +HG      + AE L L
Sbjct: 445 IISGLGVHG------HGAEALTL 461



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 175/357 (49%), Gaps = 13/357 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y K   +  A  +F  M  RD V+WN+++SG  + G+       F+     G
Sbjct: 206 VCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSG 265

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSS 209
               D  +   + SA  +      +K +HC V   G++ +++  GNA++  Y K  +  +
Sbjct: 266 V-SPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEA 324

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMAC 267
            +++F  M V++ ++W  +I+G +QN L  E ++ +  M  H GL      T++S + A 
Sbjct: 325 AQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQG-TFVSVLPAY 383

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L AL +G ++H +  K+ L  D+ + + L+D+Y+KCG + +A  +FE           
Sbjct: 384 SHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWN 443

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--II 385
            I+ G   +G   EA+ LF +M + GI+  P+ V+ V  +    +  GL  Q  S   ++
Sbjct: 444 AIISGLGVHGHGAEALTLFSRMQQEGIK--PDHVTFV-SLLAACSHAGLVDQGRSFFDVM 500

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
           +  +   P   +   + +M  + G L+++      M  + +S  W +++ A   HGN
Sbjct: 501 QVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGN 557


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 284/490 (57%), Gaps = 1/490 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC         + +H  +    Y   V +G  L+T Y +CG+    R V   M 
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+V++WT +ISG  Q + + E L LF+KM      PN  T  + + +CSG Q++ +G+Q
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H +L K   +S + + S+L+DMY+K  ++++A ++F+   E D VS T I+ G+AQ G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA+ LF ++   G++ +    + ++       SL  GKQ+H+LI++ +      + N 
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MYSKCG L  S +VF  M  R+ VSWN+M+  + RHG G + + L++++  E V+P 
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 311

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VT L++L  CSH GLV++G++   ++ +         HY C++D++GR+G L +A + I
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E MP +    +W +LLGAC +H +  +G+  A+KL   +P++   Y++++NIY+ +G WK
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           +  K  K M E  V KE G SWI ++K +H+F   ++ HP    I+  + E+   +   G
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 491

Query: 639 YVPNKRFILH 648
           +VP+   +LH
Sbjct: 492 FVPDLSCVLH 501



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 185/360 (51%), Gaps = 16/360 (4%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           A  +   L++ Y++C  + +A  + D MP R  VSW TM+SG+ +          F + L
Sbjct: 44  AVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML 103

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G    ++ +   +L++C   +     K +H L+    +E  + VG++L+  Y K  + 
Sbjct: 104 RAGCIP-NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENI 162

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF  +  R+V++ TA+ISG  Q  L EE L LF +++   +  N +T+ + V A 
Sbjct: 163 QEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 222

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           SGL +L  G+Q+H ++ +  L   + ++++L+DMYSKCG +  + ++F+   E   VS  
Sbjct: 223 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 282

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLI 384
            +L+G+ ++G   E + LF  + K   E+ P+ V+ +L V    +  GL   G  I   +
Sbjct: 283 AMLMGYGRHGLGHEVISLFKDLHK---EVKPDSVT-LLAVLSGCSHGGLVDEGLDIFDTV 338

Query: 385 IKSDFTSNPFVNNG----LINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           +K     +  ++ G    +I++  + G LE ++ +   M   ++ S W S++ A   H N
Sbjct: 339 VKE---QSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 395



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           + N   ++ +L+  +     + G  +H+  +KT          N  +   + +SLL  Y 
Sbjct: 108 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKT----------NFESHMFVGSSLLDMYA 157

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K + ++ A ++FD +P RD VS   ++SG+ + G  +     F++    G  Q +  +FT
Sbjct: 158 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM-QCNHVTFT 216

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +++A          K +H L+        V + N+LI  Y KCG     R+VF  M  R
Sbjct: 217 TLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 276

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V++W A++ G  ++ L  E + LF  +H   + P+S+T L+ +  CS    + EG  I 
Sbjct: 277 SVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 335

Query: 281 GILWKLALQSDLCIE---SALMDMYSKCGSVEDAWQIFE 316
             + K   QS L        ++D+  + G +E A  + E
Sbjct: 336 DTVVK--EQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 316/583 (54%), Gaps = 39/583 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+L+ Y K   + +A++ F+DM  RD VSWN M++   ++G      G        G  
Sbjct: 198 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV- 256

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  ++T  L+AC R       K +H  V     + +  V +ALI  Y KCGS    ++
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  ++ RN ++WT +I G +Q + + + ++LF +M   L+  +     + +  C     
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 376

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           LC GRQ+H +  K      + + ++L+ +Y+KCG +++A  +F    E D VS T ++  
Sbjct: 377 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 436

Query: 333 FA-------------------------------QNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           ++                               Q+G EE+ ++++  M+    ++ P+ V
Sbjct: 437 YSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK-DVTPDWV 495

Query: 362 SAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + V  +F     +G   LG QI    +K+    N  V N  I MYSKCG + ++ K+F  
Sbjct: 496 TYVT-LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 554

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ VSWN+MI  +++HG G +A + +++M  +G +P  ++++++L  CSH GLV +G
Sbjct: 555 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 614

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +   MT VH ISP  EH++C+VD++GRAG L EA+  I++MP+KP   VW ALL AC 
Sbjct: 615 KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACK 674

Query: 539 IHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           IHG+ E+ + AA+ +F L  PDS   Y+L+A IYS +G+  + A+  K M++ G+ K  G
Sbjct: 675 IHGNDELAELAAKHVFELDSPDS-GSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPG 733

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            SW+E+E +VH F  DD  HPQ   I   + EL+  +   GYV
Sbjct: 734 YSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV 776



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 145/324 (44%), Gaps = 46/324 (14%)

Query: 255 PNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           P+++T     ++ +C    AL   R +HG L  + L S + +++ L+  Y  CG++ DA 
Sbjct: 16  PHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDAR 75

Query: 313 QIFEF-AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           ++     +E + ++  +++ G+A+ G   +A +LF +M +  +     ++S      G  
Sbjct: 76  RLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSW 135

Query: 372 TSLG------LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG------------------ 407
            S G      L  Q+  L  K DF  +P V   L++M+ +CG                  
Sbjct: 136 MSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIF 195

Query: 408 -------------DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
                         ++ +I+ F  MA R+ VSWN MIAA ++ G   +AL L  EM  +G
Sbjct: 196 CRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKG 255

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLI 512
           V     T+ S L AC+ +  +  G +      +V R  P+ + Y  + ++++  + G   
Sbjct: 256 VRLDSTTYTSSLTACARLFSLGWGKQL---HAKVIRSLPQIDPYVASALIELYAKCGSFK 312

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           EA+     +  +  V  W  L+G 
Sbjct: 313 EAKRVFNSLQDRNSV-SWTVLIGG 335



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W S+++ Y +   +  A + FD M  R+ ++WN M+  ++++G  + G   +   L  
Sbjct: 428 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 487

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  ++  +   C     + +   I       G    V+V NA IT Y KCG  S 
Sbjct: 488 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 547

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F  +  ++V++W A+I+G  Q+ + ++  K F  M      P+ ++Y++ +  CS 
Sbjct: 548 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 607

Query: 270 LQALCEGR-------QIHGI 282
              + EG+       ++HGI
Sbjct: 608 SGLVQEGKLYFDMMTRVHGI 627


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 309/599 (51%), Gaps = 27/599 (4%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S  V  + V  +  LS++A  G   L   LHA   ++    D            + N+L+
Sbjct: 124 SGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAAD----------VFVGNALV 173

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLD 155
           + Y +   +  A  +FDDMP RD VSWN ++ G  ++G+      G F R L  G  Q D
Sbjct: 174 TAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPD 233

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           + S   ++ AC       + + +H      G E  V++GN L+  Y+KCG+  S R++F 
Sbjct: 234 RISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFD 293

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M  R+V++WT  IS        E+ L LF  M    + PN +T+++ +   S L A C 
Sbjct: 294 AMSERDVVSWTTAIS-----MDGEDALTLFNGMRRDGVPPNEVTFVALM---SALPADCP 345

Query: 276 GR---QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            R    +H    K A+  +    ++L+ MY+K   ++DA  +F+     + ++   ++ G
Sbjct: 346 ARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISG 405

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTS 391
           +AQNG   +A++LF  M +     +    S +  V  V+T S+  G+  HS  +   F  
Sbjct: 406 YAQNGRCNDALELFSSMARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGD 465

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V   LI+MY+K G+LE+S K F     R+ ++W ++I+A ARHG+    + L+ +M 
Sbjct: 466 SEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMA 525

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             GV P  V  L++L AC + G+V+ G +   SM     +    EHY+CVVDM+GRAG L
Sbjct: 526 RSGVAPDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRL 585

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   + RMP  P V   Q+LLGAC IHGD+E+G+  A  L   +P     Y+L++NIY
Sbjct: 586 AEAEELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIY 645

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK----QVHSFVVDDKMHPQADTIHGV 626
           +  G W   AK  ++M++ GV KE G SW++        +H F  DD  HP+ + I+ V
Sbjct: 646 ADVGDWDGVAKVRRKMRDRGVKKEIGFSWVDAGAGEALHLHKFSSDDTTHPRTEEIYAV 704



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 244/495 (49%), Gaps = 25/495 (5%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNAT------VIWNSLLSFYLKCDQMRNAVKLF 112
           H  + P   ++ ++  +P     ++ V   T       + NSL + Y K     +AV +F
Sbjct: 31  HRRVNPIAFSAAVRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYAKTGSFPSAVGVF 90

Query: 113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS-ACDRSEL 171
                RD  S+NT++S F    E      F    L  G  + D  + T+ LS A  R E 
Sbjct: 91  AAARARDVSSYNTILSAFPDPAE---ALDFASWMLRSGAVRPDAVTCTVALSLAAGRGEG 147

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
            LV + +H L +  G   +V VGNAL+T+Y + GS    R VF +M  R++++W A+I G
Sbjct: 148 FLV-RQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICG 206

Query: 232 LVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           L Q+     E + +F++M   G + P+ ++  S + AC G   L  GRQ+HG   KL ++
Sbjct: 207 LAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVE 266

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
             + I + L+ MY KCG+   A ++F+   E D VS T  +   + +G  E+A+ LF  M
Sbjct: 267 GYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAI---SMDG--EDALTLFNGM 321

Query: 350 VKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            + G+   PN V+  A++     D      + +H+  +K+  +     +N LI MY+K  
Sbjct: 322 RRDGVP--PNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKAR 379

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            ++D+  VF  M  R  ++WN++I+ +A++G    ALEL+  M    + P + TF S+L 
Sbjct: 380 RMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMA-RCLTPNETTFASVLS 438

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIERMPVKPD 526
           A + V  V+     +     +      +E+ A  ++DM  + G L E+R        +  
Sbjct: 439 AVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQR-S 497

Query: 527 VLVWQALLGACSIHG 541
           ++ W A++ A + HG
Sbjct: 498 LIAWTAIISANARHG 512


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 167/490 (34%), Positives = 284/490 (57%), Gaps = 1/490 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +   ++AC         + +H  +    Y   V +G  L+T Y +CG+    R V   M 
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+V++WT +ISG  Q + + E L LF+KM      PN  T  + + +CSG Q++ +G+Q
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H +L K   +S + + S+L+DMY+K  ++++A ++F+   E D VS T I+ G+AQ G 
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 224

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA+ LF ++   G++ +    + ++       SL  GKQ+H+LI++ +      + N 
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI+MYSKCG L  S +VF  M  R+ VSWN+M+  + RHG G + + L++++  E V+P 
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 343

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            VT L++L  CSH GLV++G++   ++ +         HY C++D++GR+G L +A + I
Sbjct: 344 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E MP +    +W +LLGAC +H +  +G+  A+KL   +P++   Y++++NIY+ +G WK
Sbjct: 404 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 463

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           +  K  K M E  V KE G SWI ++K +H+F   ++ HP    I+  + E+   +   G
Sbjct: 464 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 523

Query: 639 YVPNKRFILH 648
           +VP+   +LH
Sbjct: 524 FVPDLSCVLH 533



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 185/360 (51%), Gaps = 16/360 (4%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           A  +   L++ Y++C  + +A  + D MP R  VSW TM+SG+ +          F + L
Sbjct: 76  AVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKML 135

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G    ++ +   +L++C   +     K +H L+    +E  + VG++L+  Y K  + 
Sbjct: 136 RAGCIP-NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENI 194

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              R+VF  +  R+V++ TA+ISG  Q  L EE L LF +++   +  N +T+ + V A 
Sbjct: 195 QEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTAL 254

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           SGL +L  G+Q+H ++ +  L   + ++++L+DMYSKCG +  + ++F+   E   VS  
Sbjct: 255 SGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWN 314

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLI 384
            +L+G+ ++G   E + LF  + K   E+ P+ V+ +L V    +  GL   G  I   +
Sbjct: 315 AMLMGYGRHGLGHEVISLFKDLHK---EVKPDSVT-LLAVLSGCSHGGLVDEGLDIFDTV 370

Query: 385 IKSDFTSNPFVNNG----LINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           +K     +  ++ G    +I++  + G LE ++ +   M   ++ S W S++ A   H N
Sbjct: 371 VKE---QSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 427



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 174/331 (52%), Gaps = 14/331 (4%)

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  R ++   A   GL   + +   L+    M L   +     Y +++ AC   +AL EG
Sbjct: 2   LAARGLLRPEAAARGLALQRCFVAPLRAASGMALPGASARFHEYEAAITACIERRALWEG 61

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           RQ+H  +     +  + + + L+ MY +CG+++DA  + +   E   VS T ++ G++Q 
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 121

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
               EA+ LF+KM++AG   +   ++ VL       S+  GKQ+HSL++K++F S+ FV 
Sbjct: 122 ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVG 181

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + L++MY+K  +++++ +VF  +  R+ VS  ++I+ +A+ G   +AL+L+ ++  EG++
Sbjct: 182 SSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQ 241

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE------HYACVVDMVGRAGL 510
              VTF +L+ A S       G+  L    +VH +  R E          ++DM  + G 
Sbjct: 242 CNHVTFTTLVTALS-------GLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGK 294

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           L+ +R   + M ++  V+ W A+L     HG
Sbjct: 295 LLYSRRVFDNM-LERSVVSWNAMLMGYGRHG 324



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 130/279 (46%), Gaps = 17/279 (6%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           + N   ++ +L+  +     + G  +H+  +KT          N  +   + +SLL  Y 
Sbjct: 140 IPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKT----------NFESHMFVGSSLLDMYA 189

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K + ++ A ++FD +P RD VS   ++SG+ + G  +     F++    G  Q +  +FT
Sbjct: 190 KSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGM-QCNHVTFT 248

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +++A          K +H L+        V + N+LI  Y KCG     R+VF  M  R
Sbjct: 249 TLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER 308

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +V++W A++ G  ++ L  E + LF  +H   + P+S+T L+ +  CS    + EG  I 
Sbjct: 309 SVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLVDEGLDIF 367

Query: 281 GILWKLALQSDLCIE---SALMDMYSKCGSVEDAWQIFE 316
             + K   QS L        ++D+  + G +E A  + E
Sbjct: 368 DTVVK--EQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 216/646 (33%), Positives = 332/646 (51%), Gaps = 86/646 (13%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFG 141
           +P   VI   +L++ Y     ++ A ++F++ P  MRDTV +N M++G+    +      
Sbjct: 74  IPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIE 133

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSK----MIHCLVYLCGYEEEVTVGNAL 197
            F R++    +Q D  +F  +LSA   S L    +     +H  V   G E    V NAL
Sbjct: 134 LF-RAMRWANFQPDDFTFASVLSA---STLIFYDERQCGQMHGTVVKFGIEIFPAVLNAL 189

Query: 198 ITSYFKCGSS---------SSGRKVFGEMRVRNVITWTAVISGLVQNQ------------ 236
           ++ Y KC SS         +S RK+F EM  RN   WT +I+G V+N             
Sbjct: 190 LSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTM 249

Query: 237 -------------------LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
                              L+E+ L LF KM L  +  +  TY S + AC+       G+
Sbjct: 250 TEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGK 309

Query: 278 QIHGILWKLALQSD----LCIESALMDMYSKCGSVEDAWQIFE----------------- 316
           Q+H  + K  L  D    L + + L+ +Y K G V+ A +IF                  
Sbjct: 310 QVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGY 369

Query: 317 ------------FAE--ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
                       FA+  E + ++ TV++ G AQNGF E+A++LF +M   G E +    +
Sbjct: 370 VNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFA 429

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
             +    V  +L  G+Q+H+ I+     S   V N +I MY++CG +E +  +F  M   
Sbjct: 430 GAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFV 489

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSWNSMIAA  +HG+G KA+ELYE+M  EG+ P   TFL++L ACSH GLV +G  + 
Sbjct: 490 DPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYF 549

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            SM E + I+P  +HYA ++D+  RAG   +A++ I+ MP +    +W+ALL  C  HG+
Sbjct: 550 NSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGN 609

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            ++G  AAEKLF   P     Y+L++N+Y+  GRW + A+  K M++ GV KE   SW E
Sbjct: 610 MDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTE 669

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +E +VH F+VDD +HP+  +I+  L +L   M   GY+P+ +++LH
Sbjct: 670 VENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLH 715



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 210/449 (46%), Gaps = 52/449 (11%)

Query: 68  ASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV 127
           AS  K F+    +N +       IW +L++ Y++   +  A ++ D M  +  ++WN M+
Sbjct: 209 ASARKLFDEMPKRNEF-------IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMI 261

Query: 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY 187
           SG+L +G F+     F++   LG  Q+D++++T ++SAC      L+ K +H  +     
Sbjct: 262 SGYLHHGLFEDALTLFRKMRLLGV-QVDESTYTSVISACADGGFFLLGKQVHAYILKNEL 320

Query: 188 EEE----VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW------------------ 225
             +    ++VGN LIT Y+K G     RK+F EM V+++ITW                  
Sbjct: 321 NPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKS 380

Query: 226 -------------TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
                        T +ISGL QN   E+ LKLF +M L    PN   +  ++ ACS L A
Sbjct: 381 FFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGA 440

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQ+H  +  L   S L + +A++ MY++CG VE A  +F     +D VS   ++  
Sbjct: 441 LENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAA 500

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----GKQIHSLIIKSD 388
             Q+G   +A++L+ +M+K GI  D       L V    +  GL     +  +S++    
Sbjct: 501 LGQHGHGVKAIELYEQMLKEGILPDRR---TFLTVLSACSHAGLVEEGNRYFNSMLENYG 557

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELY 447
                     +I+++ + G   D+  V   M     +  W +++A    HGN    +E  
Sbjct: 558 IAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAA 617

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
           E++  + +   D T++ L +  + +G  N
Sbjct: 618 EKL-FKLIPQHDGTYVLLSNMYASLGRWN 645



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/327 (21%), Positives = 147/327 (44%), Gaps = 40/327 (12%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           ++ +G ++  ++V+ ++ ++   +     +++   I + D  +       LI  YS  G+
Sbjct: 39  VIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIAR----TTLITAYSALGN 94

Query: 409 LEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           L+ + ++F+   +  R++V +N+MI  ++   +G  A+EL+  M+    +P D TF S+L
Sbjct: 95  LKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVL 154

Query: 467 HACS------------HVGLVNKGMEFLKSMTEVHRISPRAEHYACV-VDMVGRAGLLIE 513
            A +            H  +V  G+E   ++      +  + +  C    +V  + L+  
Sbjct: 155 SASTLIFYDERQCGQMHGTVVKFGIEIFPAVLN----ALLSVYVKCASSPLVSSSSLMAS 210

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-PYILMANIYS 572
           AR   + MP K +  +W  L+     +GD       A ++     + P   +  M + Y 
Sbjct: 211 ARKLFDEMP-KRNEFIWTTLITGYVRNGDLT----GAREILDTMTEQPGIAWNAMISGYL 265

Query: 573 CSGRWKERAKAIKRMKEMG--VDKETGISWIE---------IEKQVHSFVVDDKMHPQAD 621
             G +++     ++M+ +G  VD+ T  S I          + KQVH++++ ++++P  D
Sbjct: 266 HHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRD 325

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFILH 648
            +  V   L+ L    G V   R I +
Sbjct: 326 FLLSVGNTLITLYWKYGKVDGARKIFY 352


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 298/548 (54%), Gaps = 10/548 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L+  Y +C  +  A ++FD M   D V + +++S F RNGEF++      + L+ G
Sbjct: 78  IGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG 137

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGYEEE-VTVGNALITSYFKCGSSS 208
             + ++ + T IL+AC R    ++ + IH  L+   G   + V    ALI  Y + G   
Sbjct: 138 L-KPNEHTMTTILTACPR----VLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFK 192

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             + VF  +  +NV++W +++   +++   EE L++F  M    ++PN    LS V+   
Sbjct: 193 LAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA-LSIVLGAC 251

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   L  GRQ+H    K  L +D+ + +AL+ MY + G VE+   +    E  D VS T 
Sbjct: 252 GSIGL--GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 309

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
            +    QNGF E+A+ L  +M   G   +    S+VL       SL  G Q H L +K  
Sbjct: 310 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 369

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S     N LINMYSKCG +  +   F  M   +  SWNS+I   A+HG+  KALE++ 
Sbjct: 370 CDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFS 429

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P D TFL +L  C+H G+V +G  F + M + +  +P   HYAC++DM+GR 
Sbjct: 430 KMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRN 489

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G   EA   I  MP +PD L+W+ LL +C +H + ++GK AA++L        A Y+LM+
Sbjct: 490 GRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMS 549

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+  G W++  K  +RM E GV K+ G SWIEI  +VH+F   D  HP +D+I+ +L 
Sbjct: 550 NIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLG 609

Query: 629 ELLRLMID 636
           EL+ +M D
Sbjct: 610 ELVAVMQD 617



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 226/435 (51%), Gaps = 20/435 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MP ++ V+W +++SG+ RNG  +     F   +E G    D A    +++  D   L   
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALR-A 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            + +H L    G+  +  +G+ LI  Y +CGS  + ++VF  M   +V+ +T++IS   +
Sbjct: 60  GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLC 293
           N  +E   +  ++M    + PN  T  + + AC  +     G+QIHG ++ K+ L+S   
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSV 175

Query: 294 IES-ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
             S AL+D YS+ G  + A  +F+     + VS   ++  + ++G  EEA+Q+F  M+  
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISE 235

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G++ +   +S VLG  G   S+GLG+Q+H   IK D  ++  V+N L++MY + G +E+ 
Sbjct: 236 GVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEEL 292

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             + +++   + VSW + I+A  ++G G KA+ L  +M  EG  P    F S+L +C+ V
Sbjct: 293 EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADV 352

Query: 473 GLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
             +++GM+F    LK   +    +  A     +++M  + G +  AR   + M    DV 
Sbjct: 353 ASLDQGMQFHCLALKLGCDSEICTGNA-----LINMYSKCGQMGSARLAFDVMHTH-DVT 406

Query: 529 VWQALLGACSIHGDS 543
            W +L+   + HGD+
Sbjct: 407 SWNSLIHGHAQHGDA 421


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 324/626 (51%), Gaps = 31/626 (4%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLS 97
           ++  +NY     L + SA   H H G ++H   I      D            +  +LL 
Sbjct: 120 RVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQAD----------LFVSTALLD 168

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y+KC  + +A  +F  MP RD V+WN M++G+  +G +         S+++  ++L   
Sbjct: 169 MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLL-SMQMQMHRLRPN 227

Query: 158 SFTII----LSACDRSELSLVSKMIHCLVYLCGYEEE---------VTVGNALITSYFKC 204
           + T++    L A   +     S   +C +  C +            V +G AL+  Y KC
Sbjct: 228 ASTLVALLPLLAQQGALAQGTSVHAYC-IRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 286

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYL 261
           GS    R+VF  M  RN +TW+A+I G V      +   LF  M    L  ++P S+   
Sbjct: 287 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA-- 344

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ AC+ L  L  G Q+H +L K  + +DL   ++L+ MY+K G ++ A  +F+     
Sbjct: 345 SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 404

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D VS + ++ G+ QNG  EEA  +F KM    +E D   + +++       +L  G+  H
Sbjct: 405 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 464

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             +I     S   + N LI+MY+KCG ++ S +VF+ M  R+ VSWN+MIA +  HG G 
Sbjct: 465 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +A  L+ EM   G  P  VTF+ LL ACSH GLV +G  +   M   + ++PR EHY C+
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 584

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VD++ R G L EA  FI+ MP++ DV VW ALLGAC ++ + ++GK  +  +    P+  
Sbjct: 585 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 644

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             ++L++NIYS +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HPQ+ 
Sbjct: 645 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 704

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFIL 647
            I+  L  +L  +   GY P+  F+L
Sbjct: 705 EIYRELDNILVGIKKLGYQPDTSFVL 730



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 168/363 (46%), Gaps = 33/363 (9%)

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ--LYEEGLKLFVKMHLGLINPNSLTYLS 262
           G  S    +F ++   +V T+  +I     +      +GL L+ +M    + PN+ T+  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ ACS L     GR IH       LQ+DL + +AL+DMY KC  + DA  IF      D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            V+   +L G+A +G    A+   + M      + PN  +  A+L +     +L  G  +
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 381 HSLII----------KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
           H+  I          KS  T    +   L++MY+KCG L  + +VF  M  RN V+W+++
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSAL 310

Query: 431 IAAFARHGNGFKALELYEEMKLEG---VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           I  F       +A  L++ M  +G   + PT +   S L AC+        ++ L+   +
Sbjct: 311 IGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACA-------SLDHLRMGEQ 361

Query: 488 VHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           +H +  ++  +A       ++ M  +AGL+ +A +  + M VK D + + AL+     +G
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNG 420

Query: 542 DSE 544
            +E
Sbjct: 421 RAE 423


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 318/579 (54%), Gaps = 34/579 (5%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D    A+ +F  +   + + WNTM+ G+  + +       +   + LG    +  +F  +
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLP-NSYTFPFL 72

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN--------------------------- 195
           L +C +S+     + IH  V   GYE ++ V                             
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 196 ----ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G+  S +++F E+ V++V++W A+ISG  +   Y+E L+LF +M   
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+  T ++ + AC+  +++  GRQ+H  +      S+L I +AL+D+YSKCG VE A
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +FE     D VS   ++ G+      +EA+ LF +M+++G   +   + ++L      
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 372 TSLGLGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
            ++ +G+ IH  I K   D T+ P +   LI+MY+KCGD+E + +VF+ M  ++  SWN+
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI  FA HG      +L+  M+  G+EP D+TF+ LL ACSH G ++ G    KSMT+ +
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDY 432

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I+P+ EHY C++D++G +GL  EA+  I+ MP++PD ++W +LL AC  HG+ E+ +  
Sbjct: 433 DITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESF 492

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           A  L   +P++P  Y+L++NIY+ +G W E AK    +   G+ K  G S IEI+ +VH 
Sbjct: 493 ARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHE 552

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           F+V DK+HP+   I+G+L E+  L+ + G+VP+   +L 
Sbjct: 553 FIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQ 591


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 324/626 (51%), Gaps = 31/626 (4%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLS 97
           ++  +NY     L + SA   H H G ++H   I      D            +  +LL 
Sbjct: 5   RVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQAD----------LFVSTALLD 53

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y+KC  + +A  +F  MP RD V+WN M++G+  +G +         S+++  ++L   
Sbjct: 54  MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHL-LSMQMQMHRLRPN 112

Query: 158 SFTII----LSACDRSELSLVSKMIHCLVYLCGYEEE---------VTVGNALITSYFKC 204
           + T++    L A   +     S   +C +  C +            V +G AL+  Y KC
Sbjct: 113 ASTLVALLPLLAQQGALAQGTSVHAYC-IRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 171

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYL 261
           GS    R+VF  M  RN +TW+A+I G V      +   LF  M    L  ++P S+   
Sbjct: 172 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA-- 229

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ AC+ L  L  G Q+H +L K  + +DL   ++L+ MY+K G ++ A  +F+     
Sbjct: 230 SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 289

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D VS + ++ G+ QNG  EEA  +F KM    +E D   + +++       +L  G+  H
Sbjct: 290 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 349

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             +I     S   + N LI+MY+KCG ++ S +VF+ M  R+ VSWN+MIA +  HG G 
Sbjct: 350 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 409

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +A  L+ EM   G  P  VTF+ LL ACSH GLV +G  +   M   + ++PR EHY C+
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VD++ R G L EA  FI+ MP++ DV VW ALLGAC ++ + ++GK  +  +    P+  
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             ++L++NIYS +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HPQ+ 
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 589

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFIL 647
            I+  L  +L  +   GY P+  F+L
Sbjct: 590 EIYRELDNILVGIKKLGYQPDTSFVL 615


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 316/583 (54%), Gaps = 39/583 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+L+ Y K   + +A++ F+DM  RD VSWN M++   ++G      G        G  
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV- 266

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  ++T  L+AC R       K +H  V     + +  V +ALI  Y KCGS    ++
Sbjct: 267 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 326

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  ++ RN ++WT +I G +Q + + + ++LF +M   L+  +     + +  C     
Sbjct: 327 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMD 386

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           LC GRQ+H +  K      + + ++L+ +Y+KCG +++A  +F    E D VS T ++  
Sbjct: 387 LCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITA 446

Query: 333 FA-------------------------------QNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           ++                               Q+G EE+ ++++  M+    ++ P+ V
Sbjct: 447 YSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK-DVTPDWV 505

Query: 362 SAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + V  +F     +G   LG QI    +K+    N  V N  I MYSKCG + ++ K+F  
Sbjct: 506 TYVT-LFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 564

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ VSWN+MI  +++HG G +A + +++M  +G +P  ++++++L  CSH GLV +G
Sbjct: 565 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +   MT VH ISP  EH++C+VD++GRAG L EA+  I++MP+KP   VW ALL AC 
Sbjct: 625 KLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACK 684

Query: 539 IHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           IHG+ E+ + AA+ +F L  PDS   Y+L+A IYS +G+  + A+  K M++ G+ K  G
Sbjct: 685 IHGNDELAELAAKHVFELDSPDS-GSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPG 743

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            SW+E+E +VH F  DD  HPQ   I   + EL+  +   GYV
Sbjct: 744 YSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV 786



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 149/554 (26%), Positives = 257/554 (46%), Gaps = 71/554 (12%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  +  N +++ Y K   + +A +LFD MP RD  SWNT++SG+ +   F  G   F  
Sbjct: 69  PN-VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
               G    +  +F  ++ +C       ++  +  L +   +  +  V  AL+  + +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 206 SSSSGRKVFGE-------------------------------MRVRNVITWTAVISGLVQ 234
                 ++F +                               M  R+V++W  +I+ L Q
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           +    E L L V+MH   +  +S TY SS+ AC+ L +L  G+Q+H  + +   Q D  +
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL+++Y+KCGS ++A ++F   ++ + VS TV++ G  Q     ++++LF +M    +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            ID   ++ ++        L LG+Q+HSL +KS       V+N LI++Y+KCGDL+++  
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-------------------- 454
           VFS M+ R+ VSW SMI A+++ GN  KA E ++ M                        
Sbjct: 428 VFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDG 487

Query: 455 ------------VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
                       V P  VT+++L   C+ +G    G + +    +   I   +   A + 
Sbjct: 488 LKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAIT 547

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL--FLAQPDS 560
            M  + G + EA+   + +  K DV+ W A++   S HG   MGK AA+     L++   
Sbjct: 548 -MYSKCGRISEAQKLFDLLNGK-DVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAK 602

Query: 561 PAPYILMANIYSCS 574
           P     +A +  CS
Sbjct: 603 PDYISYVAVLSGCS 616



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 204/453 (45%), Gaps = 78/453 (17%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E  V   N ++  Y K GS S   ++F  M  R+V +W  ++SG  Q + + +GL+ FV 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 248 MHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           MH  G   PN+ T+   + +C  L       Q+ G+ WK     D  +E+AL+DM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 307 -------------------------------SVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
                                           ++ A + FE   E D VS  +++   +Q
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +G   EA+ L V+M + G+ +D    ++ L       SLG GKQ+H+ +I+S    +P+V
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            + LI +Y+KCG  +++ +VF+ +  RNSVSW  +I    ++    K++EL+ +M+ E +
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 456 EPTDVTFLSLLHAC-----------------------------SHVGLVNK-----GMEF 481
                   +L+  C                             S + L  K       EF
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 482 L-KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +  SM+E   +S     +  ++    + G +I+AR F + M  + + + W A+LGA   H
Sbjct: 428 VFSSMSERDIVS-----WTSMITAYSQIGNIIKAREFFDGMATR-NAITWNAMLGAYIQH 481

Query: 541 GDSEMG--KYAAEKLFLAQPDSPAPYILMANIY 571
           G  E G   Y+A    L+Q D    ++    ++
Sbjct: 482 GAEEDGLKMYSA---MLSQKDVTPDWVTYVTLF 511



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 7/200 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W S+++ Y +   +  A + FD M  R+ ++WN M+  ++++G  + G   +   L  
Sbjct: 438 VSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  ++  +   C     + +   I       G    V+V NA IT Y KCG  S 
Sbjct: 498 KDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISE 557

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +K+F  +  ++V++W A+I+G  Q+ + ++  K F  M      P+ ++Y++ +  CS 
Sbjct: 558 AQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSH 617

Query: 270 LQALCEGR-------QIHGI 282
              + EG+       ++HGI
Sbjct: 618 SGLVQEGKLYFDMMTRVHGI 637



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 70/340 (20%)

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-AEEL 321
           ++ +C    AL   R +HG L  + L S + +++ L+  Y  CG++ DA ++     +E 
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE---------------ID--------- 357
           + ++  +++ G+A+ G   +A +LF +M +  +                +D         
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 358 ------PNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG-- 407
                 PN  +   V+   G      L  Q+  L  K DF  +P V   L++M+ +CG  
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 408 -----------------------------DLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
                                         ++ +I+ F  MA R+ VSWN MIAA ++ G
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSG 249

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              +AL L  EM  +GV     T+ S L AC+ +  +  G +      +V R  P+ + Y
Sbjct: 250 RVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL---HAKVIRSLPQIDPY 306

Query: 499 --ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             + ++++  + G   EA+     +  +  V  W  L+G 
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSLQDRNSV-SWTVLIGG 345


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 290/525 (55%), Gaps = 1/525 (0%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNTM+ G +    FD     +  S+  G +  +  +   +L AC R     +   IH L+
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYG-SMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL 140

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              GY+ +V V  +L++ Y KC +     KVF ++  +NV++WTA+I+G + +  + E +
Sbjct: 141 VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
             F K+    + P+S + +  + AC+ L     G  I   +    +  ++ + ++L+DMY
Sbjct: 201 GAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMY 260

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG++E A  IF    E D VS + ++ G+A NG  ++A+ LF +M    ++ D   + 
Sbjct: 261 VKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            VL       +L LG    SL+ +++F SNP +   LI+MYSKCG +  + ++F+ M  +
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKK 380

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V WN+M+   + +G+      L+  ++  G+ P + TF+ LL  C+H G VN+G +F 
Sbjct: 381 DRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFF 440

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +M  V  ++P  EHY C+VD++GRAGLL EA   I  MP+KP+ +VW ALLG C +H D
Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKD 500

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           + + +   +KL   +P +   Y+ ++NIYS + RW+E  K    MKE  + K    SWIE
Sbjct: 501 THLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIE 560

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           I+  VH F+V DK H  ++ I+  L EL R +   G+VP   F+L
Sbjct: 561 IDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 214/435 (49%), Gaps = 16/435 (3%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N   I  +L   A++    LG  +H+  +K     D            +  SLLS Y+
Sbjct: 111 LPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD----------VFVKTSLLSLYV 160

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KCD   +A+K+FDD+P ++ VSW  +++G++ +G F    G FK+ LE+G  + D  S  
Sbjct: 161 KCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL-KPDSFSLV 219

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +L+AC R       + I   +   G    V V  +L+  Y KCG+      +F  M  +
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK 279

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           ++++W+ +I G   N L ++ L LF +M    + P+  T +  + AC+ L AL  G    
Sbjct: 280 DIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWAS 339

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            ++ +    S+  + +AL+DMYSKCGSV  AW+IF   ++ D V    ++VG + NG  +
Sbjct: 340 SLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAK 399

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--G 398
               LF  + K GI  D N    +L        +  G+Q  +  +K  F+  P + +   
Sbjct: 400 AVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGC 458

Query: 399 LINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVE 456
           ++++  + G L ++ ++ + M  + N+V W +++     H +   A ++ +++ +LE   
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518

Query: 457 PTDVTFLSLLHACSH 471
             +   LS +++ +H
Sbjct: 519 SGNYVQLSNIYSGNH 533



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 191/369 (51%), Gaps = 2/369 (0%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  +     +++  + N ++      GS++  + VF +++  N+  W  +I GLV  
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             +++ + L+  M  G   PN+ T    + AC+    +  G +IH +L K     D+ ++
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+ +Y KC + +DA ++F+   + + VS T I+ G+  +G   EA+  F K+++ G++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  VL           G+ I   I  S    N FV   L++MY KCG+LE +  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           FS M  ++ VSW++MI  +A +G   +AL+L+ +M+ E ++P   T + +L AC+ +G +
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           + G+ +  S+ + +           ++DM  + G + +A      M  K D +VW A++ 
Sbjct: 333 DLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMV 390

Query: 536 ACSIHGDSE 544
             S++G ++
Sbjct: 391 GLSMNGHAK 399



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 151/329 (45%), Gaps = 11/329 (3%)

Query: 252 LINPNSLTYLSSV----MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           L NP+S  +  ++       +GL    + + IH  L +L L  D  + + ++      GS
Sbjct: 4   LTNPSSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGS 63

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
              +  +F   +E +      ++ G       ++A+ L+  M   G   +   +  VL  
Sbjct: 64  TNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA 123

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                 + LG +IHSL++K+ +  + FV   L+++Y KC + +D++KVF  +  +N VSW
Sbjct: 124 CARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSW 183

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            ++I  +   G+  +A+  ++++   G++P   + + +L AC+ +G    G E++     
Sbjct: 184 TAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYIS 242

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
              +         ++DM  + G L  A      MP K D++ W  ++   + +G   + +
Sbjct: 243 DSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK-DIVSWSTMIQGYAFNG---LPQ 298

Query: 548 YAAEKLFLAQPDSPAP--YILMANIYSCS 574
            A +  F  Q ++  P  Y ++  + +C+
Sbjct: 299 QALDLFFQMQSENLKPDCYTMVGVLSACA 327


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 188/574 (32%), Positives = 318/574 (55%), Gaps = 13/574 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V I  +L + A       G  +H   +KT    D+Q          + N+L+  Y KC
Sbjct: 108 NMVSIVSVLPVCAGLEDGVTGRQIHCYVVKT--GLDSQ--------VTVGNALVDVYGKC 157

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++++ ++FD++  R+ VSWN +++              F+  ++ G  + +  +F+ +
Sbjct: 158 GYVKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMID-GGVKPNSVTFSSM 216

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L      +L    K IH      G E ++ V NALI  Y K G S     VF ++  +N+
Sbjct: 217 LPVLVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNI 276

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W A+++   QN+L    + L  +M      PNS+T+ + + AC+ +  L  G++IH  
Sbjct: 277 VSWNAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHAR 336

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             +     DL + +AL DMY+KCG +  A ++F+ +   D VS  ++++G++Q     E+
Sbjct: 337 AIRTGSSVDLFVSNALTDMYAKCGCLNLARRVFKISLR-DEVSYNILIIGYSQTTNCSES 395

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++LF++M   G+++D      V+       +L  GK++H L ++    ++ F+ N L++ 
Sbjct: 396 LRLFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDF 455

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG ++ + KVF ++  R++ SWNSMI  +   G    A+ L+E MK +GVE   V++
Sbjct: 456 YIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSY 515

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSH GLV +G ++ + M +V  I P   HYAC+VD++GRAGL+ EA   IE +P
Sbjct: 516 IAVLSACSHGGLVEEGKKYFEHM-QVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLP 574

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++PD  VW ALLGAC IHG  E+  +AAE LF  +P     Y +++N+Y+ +G+W E  +
Sbjct: 575 IEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQ 634

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
             K MK  G  K  G SW++I+ QVH+FV  ++M
Sbjct: 635 VRKLMKSRGAKKNPGCSWVQIDNQVHAFVAGERM 668



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 246/453 (54%), Gaps = 21/453 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLEL 149
           + N+LL FY  C  +++  ++FD+M  RD VSWN+++  F  +G +      F + +L  
Sbjct: 44  VGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRS 103

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           GF + +  S   +L  C   E  +  + IHC V   G + +VTVGNAL+  Y KCG    
Sbjct: 104 GF-RPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKD 162

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+VF E+  RN ++W A+I+ L   +  ++ L++F  M  G + PNS+T+ S +     
Sbjct: 163 SRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVE 222

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+    G++IHG   +  L+SD+ + +AL+DMY+K G    A  +F    E + VS   +
Sbjct: 223 LKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAM 282

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKS 387
           +  FAQN  E  A+ L V+ ++A  EI PN V  + VL        L  GK+IH+  I++
Sbjct: 283 VANFAQNRLELAAVDL-VRQMQADGEI-PNSVTFTNVLPACARIGFLRPGKEIHARAIRT 340

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + + FV+N L +MY+KCG L  + +VF +++ R+ VS+N +I  +++  N  ++L L+
Sbjct: 341 GSSVDLFVSNALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLF 399

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CV 501
            EM ++G++   V+++ ++ AC+++  + +G        EVH ++ R   +        +
Sbjct: 400 LEMGIKGMKLDVVSYMGVISACANLAALKQG-------KEVHGLAVRKHLHTHLFIANAL 452

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +D   + G +  A     ++P + D   W +++
Sbjct: 453 LDFYIKCGRIDLAGKVFRQIPSR-DTASWNSMI 484



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/370 (32%), Positives = 198/370 (53%), Gaps = 14/370 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  +F  +L AC  S      + IH +V+  G++ +V VGN L+  Y  CG     ++
Sbjct: 4   RLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKR 63

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQ 271
           VF EM  R+V++W +VI     +  Y E + LF +M+L     PN ++ +S +  C+GL+
Sbjct: 64  VFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLE 123

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               GRQIH  + K  L S + + +AL+D+Y KCG V+D+ ++F+   E +GVS   I+ 
Sbjct: 124 DGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIIT 183

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             A     ++A+++F  M+  G++ +    S++L V         GK+IH   ++    S
Sbjct: 184 SLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLES 243

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV N LI+MY+K G    +  VF+++  +N VSWN+M+A FA++     A++L  +M+
Sbjct: 244 DIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQ 303

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMV 505
            +G  P  VTF ++L AC+ +G       FL+   E+H  + R            + DM 
Sbjct: 304 ADGEIPNSVTFTNVLPACARIG-------FLRPGKEIHARAIRTGSSVDLFVSNALTDMY 356

Query: 506 GRAGLLIEAR 515
            + G L  AR
Sbjct: 357 AKCGCLNLAR 366



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 15/189 (7%)

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G+ +D +    VL       S+  G++IH ++ K  F S+ FV N L+  Y  CG L+D 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH 471
            +VF  M  R+ VSWNS+I  F+ HG   +A+ L+ EM L  G  P  V+ +S+L  C+ 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA- 120

Query: 472 VGLVNKGMEFLKSMTEVH------RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
                 G+E   +  ++H       +  +      +VD+ G+ G + ++R   + +  + 
Sbjct: 121 ------GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERN 174

Query: 526 DVLVWQALL 534
            V  W A++
Sbjct: 175 GV-SWNAII 182



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 122/278 (43%), Gaps = 16/278 (5%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           + N V  + +L   A+ G    G  +HA  I+T    D            + N+L   Y 
Sbjct: 308 IPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVD----------LFVSNALTDMYA 357

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF--YQLDQAS 158
           KC  +  A ++F  + +RD VS+N ++ G+ +          F   LE+G    +LD  S
Sbjct: 358 KCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLF---LEMGIKGMKLDVVS 413

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +  ++SAC         K +H L         + + NAL+  Y KCG      KVF ++ 
Sbjct: 414 YMGVISACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIP 473

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+  +W ++I G          + LF  M    +  +S++Y++ + ACS    + EG++
Sbjct: 474 SRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKK 533

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
               +    ++      + ++D+  + G +E+A ++ E
Sbjct: 534 YFEHMQVQNIKPTQMHYACMVDLLGRAGLIEEAVKLIE 571


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 173/487 (35%), Positives = 282/487 (57%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L  C ++   +  K  H  V   G E +    N L+  Y KCG      KVF E+  R+
Sbjct: 4   LLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPERS 63

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  +I   VQN   E+ + +F++M       +  T  S V AC+    +   RQ+H 
Sbjct: 64  MVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLHA 123

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K  + +D+ + +AL+D+Y+KCGS+EDA  +FE   E + V+ + I+ GF QN   EE
Sbjct: 124 FAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEE 183

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            + LF +  + G+E +  M+S+V+       +L  G+Q+H+++ ++ F  N FV + L++
Sbjct: 184 GLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVD 243

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E++  +F  +  +N V WN++I+ FA+H    + + L+EEM+  G++P +VT
Sbjct: 244 MYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVT 303

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           ++++L AC HVGLV+KG  +   MT  H +SP   HY+C+VD++GR GL+ EA   + +M
Sbjct: 304 YVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKM 363

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C IHG+ E+ + AA+ LF  +PD    Y+L+AN Y+ S +W+E A
Sbjct: 364 PFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEAA 423

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           KA K +K   + KE G SWIEI+ +VH+F+  ++ HP+   I+  L  LL  M       
Sbjct: 424 KARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLEEMTKLVNKA 483

Query: 642 NKRFILH 648
              F LH
Sbjct: 484 ETDFDLH 490



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 128/404 (31%), Positives = 205/404 (50%), Gaps = 23/404 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL   AK      G + H   I+            +   T+  N L++ Y KC  +R A 
Sbjct: 4   LLQFCAKNREPITGKACHGQVIR----------LGLETDTLTSNMLMNMYSKCGLIRRAC 53

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACD 167
           K+FD++P R  VSWN M+   ++NGE +     F   LE+       + FT+  ++ AC 
Sbjct: 54  KVFDEIPERSMVSWNIMIGTCVQNGEEEKAIDIF---LEMQREGSPCSEFTVSSVVCACA 110

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
                   + +H        + +V VG ALI  Y KCGS      VF  M  RN +TW++
Sbjct: 111 AKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSS 170

Query: 228 VISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           +++G VQN+LYEEGL LF +   +GL N N     S + AC+GL AL EGRQ+H I+ + 
Sbjct: 171 IVAGFVQNELYEEGLVLFARGKEMGLEN-NQFMISSVIRACAGLAALIEGRQVHAIVCRT 229

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
               +  + SAL+DMY+KCGS+E+A+ +F   E+ + V    I+ GFA++    E M LF
Sbjct: 230 GFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLF 289

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVNNGLINMYSK 405
            +M + G++ D     AVL        +  G+    L+ +  + + N    + ++++  +
Sbjct: 290 EEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGR 349

Query: 406 CGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE 448
            G + ++ ++ ++M    + S W S++A+   HGN    LEL E
Sbjct: 350 GGLVHEAHELMTKMPFAATASMWGSLLASCRIHGN----LELAE 389



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 132/269 (49%), Gaps = 12/269 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S ++   A +G       LHA  IK     D            +  +L+  Y KC  + 
Sbjct: 102 VSSVVCACAAKGDVFFCRQLHAFAIKAVVDAD----------VFVGTALIDVYAKCGSIE 151

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A  +F+ MP R+ V+W+++V+GF++N  ++ G   F R  E+G  + +Q   + ++ AC
Sbjct: 152 DASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGL-ENNQFMISSVIRAC 210

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                 +  + +H +V   G+     V +AL+  Y KCGS      +F  +  +NV+ W 
Sbjct: 211 AGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWN 270

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK- 285
           A+ISG  ++    E + LF +M    + P+ +TY++ + AC  +  + +GR    ++ + 
Sbjct: 271 AIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTRE 330

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQI 314
             +  ++   S ++D+  + G V +A ++
Sbjct: 331 HNVSPNVLHYSCMVDILGRGGLVHEAHEL 359


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 194/608 (31%), Positives = 319/608 (52%), Gaps = 31/608 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL    + G      +LH   +KT    D            +  SL++ Y++C   R+A 
Sbjct: 82  LLHRCVEAGGLGAARALHGHMVKTGTAAD----------MFVATSLVNVYMRCASSRDAR 131

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACD 167
           +LFD MP ++ V+W  +++G   N E  +    F   LELG Y    + +T+  +LSAC 
Sbjct: 132 RLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYP---SHYTLGGMLSACS 188

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            +    + + +H      G +   ++GN+L   Y K G   SG + F     +NVITWT 
Sbjct: 189 AARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTT 248

Query: 228 VISGLVQNQLYEE-GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           +IS   +++ Y + GL LF+ M  G + PN  T  S +  C     +  G+Q+    +K+
Sbjct: 249 MISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKV 308

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ----------- 335
             +++L ++++ M +Y + G  ++A ++FE  +    ++   ++ G+AQ           
Sbjct: 309 GCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHA 368

Query: 336 --NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
              GF+  A++LF  +V++ ++ D    S++L V     +L  G+QIH+  IK+   S+ 
Sbjct: 369 RSRGFQ--ALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDV 426

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            VN+ L+NMY+KCG +E + K F  M  R  V+W SMI+ +++HG    A++L+E+M L 
Sbjct: 427 VVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLS 486

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G  P ++TF+SLL ACS+ GLV +   +   M   + I P  +HY C+VDM  R G L +
Sbjct: 487 GARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDD 546

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A SFI+R   +P+  +W +L+  C  HG+ E+  YAA++L   +P     Y+L+ N+Y  
Sbjct: 547 AFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYIS 606

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           +GRW++ A+  K  K   V      SWI I  +V+ F  DD  HPQA  ++ +L  LL  
Sbjct: 607 TGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEK 666

Query: 634 MIDEGYVP 641
               GY P
Sbjct: 667 AKAVGYEP 674



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 224/473 (47%), Gaps = 37/473 (7%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           P  +  ++   S+     Q     +L  + P R   +   M  G LR+G+          
Sbjct: 25  PPTSAAFDKGTSYQRSSAQALENGRLEHESPPRPLDAQEAM--GMLRDGQ---------- 72

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
                   +  A +  +L  C  +     ++ +H  +   G   ++ V  +L+  Y +C 
Sbjct: 73  -------TVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCA 125

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSV 264
           SS   R++F  M  +NV+TWTA+I+G   N      L++FV+M  LG   P+  T    +
Sbjct: 126 SSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRY-PSHYTLGGML 184

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            ACS  + +  G+Q+HG   K    +   + ++L  +Y K G +E   + F+   + + +
Sbjct: 185 SACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVI 244

Query: 325 SMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           + T ++   A++  + +  + LF+ M++ G+  +   +++V+ + G    + LGKQ+ + 
Sbjct: 245 TWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAF 304

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR------- 436
             K    +N  V N  + +Y + G+ ++++++F  M   + ++WN+MI+ +A+       
Sbjct: 305 CYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKD 364

Query: 437 ----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
                  GF+AL+L+ ++    ++P   TF S+L  CS +  + +G +   +  +   +S
Sbjct: 365 DLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLS 424

Query: 493 PRAEHYACVVDMVGRAGLL-IEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               + A +V+M  + G +    ++F+E MP +  V  W +++   S HG S+
Sbjct: 425 DVVVNSA-LVNMYNKCGSIECATKAFVE-MPTRTPV-TWTSMISGYSQHGRSQ 474


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 203/584 (34%), Positives = 318/584 (54%), Gaps = 15/584 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           +L   AK  H      +HA  +K+ F+     N++ V  ATV        Y+KC ++ +A
Sbjct: 59  VLKACAKLSHLRNSQIIHAHVLKSCFQ----SNIF-VQTATV------DMYVKCGRLEDA 107

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
             +F +MP+RD  SWN M+ GF ++G  D       R + L   + D  +  +++ +  R
Sbjct: 108 HNVFVEMPVRDIASWNAMLLGFAQSGFLDR-LSCLLRHMRLSGIRPDAVTVLLLIDSILR 166

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWT 226
            +       ++      G   +V+V N LI +Y KCG+  S   +F E+   +R+V++W 
Sbjct: 167 VKSLTSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWN 226

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++I+     + + + +  +  M  G  +P+  T L+ + +C   +AL  G  +H    KL
Sbjct: 227 SMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKL 286

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              SD+C+ + L+ MYSKCG V  A  +F    +   VS TV++  +A+ G+  EAM LF
Sbjct: 287 GCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLF 346

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
             M  AG + D   V A++   G   +L LGK I +  I +    N  V N LI+MY+KC
Sbjct: 347 NAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVVVCNALIDMYAKC 406

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G   D+ ++F  MA R  VSW +MI A A +G+   ALEL+  M   G++P  +TFL++L
Sbjct: 407 GGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVL 466

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+H GLV +G+E    MT+ + I+P  +HY+C+VD++GR G L EA   I+ MP +PD
Sbjct: 467 QACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPD 526

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
             +W ALL AC +HG  EMGKY +E+LF  +P    PY+ MANIY+ +  W+  A   + 
Sbjct: 527 SGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRN 586

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           MK + V K  G S I++  +   F V+D+ HP+   I+ +L  L
Sbjct: 587 MKYLQVRKSPGQSIIQVNGKPTIFTVEDRDHPETLYIYDMLDGL 630



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 201/426 (47%), Gaps = 11/426 (2%)

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+     +  G        F++  + G    + ++F  +L AC +      S++IH  
Sbjct: 20  TWNSNFRHLVNQGHAQNALILFRQMKQSGITP-NNSTFPFVLKACAKLSHLRNSQIIHAH 78

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V    ++  + V  A +  Y KCG       VF EM VR++ +W A++ G  Q+   +  
Sbjct: 79  VLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRL 138

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
             L   M L  I P+++T L  + +   +++L     ++    ++ +  D+ + + L+  
Sbjct: 139 SCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSVANTLIAA 198

Query: 302 YSKCGSVEDAWQIFEFAEELDG-----VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           YSKCG++  A  +F   +E++      VS   ++  +A      +A+  +  M+  G   
Sbjct: 199 YSKCGNLCSAETLF---DEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSP 255

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D + +  +L       +L  G  +HS  +K    S+  V N LI MYSKCGD+  +  +F
Sbjct: 256 DISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSARFLF 315

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
           + M+ +  VSW  MI+A+A  G   +A+ L+  M+  G +P  VT L+L+  C   G + 
Sbjct: 316 NGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALE 375

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            G +++ + +  + +         ++DM  + G   +A+     M  +  V+ W  ++ A
Sbjct: 376 LG-KWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRT-VVSWTTMITA 433

Query: 537 CSIHGD 542
           C+++GD
Sbjct: 434 CALNGD 439



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 162/369 (43%), Gaps = 41/369 (11%)

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           R   + TW +    LV     +  L LF +M    I PN+ T+   + AC+ L  L   +
Sbjct: 14  RFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQ 73

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
            IH  + K   QS++ +++A +DMY KCG +EDA  +F      D  S   +L+GFAQ+G
Sbjct: 74  IIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSG 133

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVL---GVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           F +    L   M  +GI   P+ V+ +L    +  V +   LG  ++S  I+     +  
Sbjct: 134 FLDRLSCLLRHMRLSGIR--PDAVTVLLLIDSILRVKSLTSLGA-VYSFGIRIGVHMDVS 190

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
           V N LI  YSKCG+L  +  +F  +    R+ VSWNSMIAA+A      KA+  Y+ M  
Sbjct: 191 VANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLD 250

Query: 453 EGVEPTDVTFLSLLHAC----------------------SHVGLVNKGMEFLKSMTEVHR 490
            G  P   T L+LL +C                      S V +VN  +       +VH 
Sbjct: 251 GGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHS 310

Query: 491 I--------SPRAEHYACVVDMVGRAGLLIEARSFIERMPV---KPDVLVWQALLGACSI 539
                          +  ++      G + EA +    M     KPD++   AL+  C  
Sbjct: 311 ARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQ 370

Query: 540 HGDSEMGKY 548
            G  E+GK+
Sbjct: 371 TGALELGKW 379


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 160/409 (39%), Positives = 253/409 (61%)

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           ++ L+LF  +H      + +T  ++  AC  L  L +G+QIH    K    SDL + S +
Sbjct: 12  KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY KCG + +A  +F +    D V+ T ++ G   NG E++A++++ +M ++ +  D 
Sbjct: 72  LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 131

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
              + ++      T+L  G+Q+H+ +IK D  S+PFV   L++MY+KCG++ED+ ++F +
Sbjct: 132 YTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKK 191

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN   WN+M+   A+HGN  +A+ L++ MK  G+EP  V+F+ +L ACSH GL ++ 
Sbjct: 192 MNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEA 251

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E+L SM   + I P  EHY+C+VD +GRAGL+ EA   IE MP K    + +ALLGAC 
Sbjct: 252 YEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACR 311

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           I GD E GK  A +LF  +P   A Y+L++NIY+ + RW +   A K MK   V K+ G 
Sbjct: 312 IQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGF 371

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           SWI+++  +H FVVDD+ HPQAD I+  + E+++ + ++GYVP+  F+L
Sbjct: 372 SWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 420



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 158/314 (50%), Gaps = 18/314 (5%)

Query: 138 MGFGFF-----KRSLEL------GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
           M FG+      K++LEL         + DQ +      AC    L    K IH      G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           ++ ++ V + ++  Y KCG   +   VF  +   + + WT++ISG V N   ++ L+++ 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M    + P+  T+ + + A S + AL +GRQ+H  + KL   SD  + ++L+DMY+KCG
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 180

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
           ++EDA+++F+     +      +LVG AQ+G  EEA+ LF  M   GIE  P+ VS  +G
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIE--PDRVS-FIG 237

Query: 367 VFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR 422
           +    +  GL  + +  +  + +D+   P + +   L++   + G ++++ KV   M  +
Sbjct: 238 ILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFK 297

Query: 423 NSVSWNSMIAAFAR 436
            S S N  +    R
Sbjct: 298 ASASINRALLGACR 311



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 121/216 (56%), Gaps = 2/216 (0%)

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+      ++A++LF  + K+G + D   ++      G    L  GKQIH+  IK+ 
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S+  VN+G+++MY KCGD+ ++  VF+ ++  + V+W SMI+    +GN  +AL +Y 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M+   V P + TF +L+ A S V  + +G +   ++ ++  +S      + +VDM  + 
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTS-LVDMYAKC 179

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G + +A    ++M V+ ++ +W A+L   + HG++E
Sbjct: 180 GNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 214



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 12/255 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  IK    FD+    N        + +L  Y+KC  M NA  +F+ +   D V+
Sbjct: 49  GKQIHAHAIKA--GFDSDLHVN--------SGILDMYIKCGDMVNAGIVFNYISAPDDVA 98

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W +M+SG + NG  D     + R +       D+ +F  ++ A          + +H  V
Sbjct: 99  WTSMISGCVDNGNEDQALRIYHR-MRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 157

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                  +  VG +L+  Y KCG+     ++F +M VRN+  W A++ GL Q+   EE +
Sbjct: 158 IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAV 217

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ-IHGILWKLALQSDLCIESALMDM 301
            LF  M    I P+ ++++  + ACS      E  + +H +     ++ ++   S L+D 
Sbjct: 218 NLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDA 277

Query: 302 YSKCGSVEDAWQIFE 316
             + G V++A ++ E
Sbjct: 278 LGRAGLVQEADKVIE 292


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/605 (32%), Positives = 326/605 (53%), Gaps = 13/605 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ +L + A++    +G  +H   +K           ++    V+ N+L+  Y KC  + 
Sbjct: 292 LATVLPVCARDREIGVGKGVHGLAMK----------LSLDKEVVVNNALMDMYSKCGCIN 341

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF-YQLDQASFTIILSA 165
           +A  +F     ++ VSWNTMV GF   G+    F   ++ L  G   + D+ +    +  
Sbjct: 342 DAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPV 401

Query: 166 CDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           C    +    K +HC      +      V NA + SY KCGS S   +VF  +R + V +
Sbjct: 402 CFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNS 461

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W A+I G  Q+      L  + +M    + P+  T  S + ACS +++L  G+++HG++ 
Sbjct: 462 WNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLII 521

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           +  L+ D  +  +L+ +Y  CG +  A  +F+  E+   VS   ++ G+ QNGF E A+ 
Sbjct: 522 RNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALS 581

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF +MV  G++     + +V G   +  SL LG++ H   +K     N F+   +I+MY+
Sbjct: 582 LFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYA 641

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K G + +S KVF+ +  R+  SWN+M+  +  HG   +A++L+EEM+  G  P ++TFL 
Sbjct: 642 KNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLG 701

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMPV 523
           +L AC+H GLV++G+ +L  M  +  ++P  +HYACV+DM+ RAG L EA +   E M  
Sbjct: 702 VLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSE 761

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +P V +W  LL +C IH + EMG+  A KLF+++P+ P  Y+L++N+Y+ SG+W E  K 
Sbjct: 762 EPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKV 821

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            +RMKEM + K+ G SWIE+  +V SFV  +      + I  + + L R +   GY P+ 
Sbjct: 822 RQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDT 881

Query: 644 RFILH 648
             + H
Sbjct: 882 SSVQH 886



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 227/465 (48%), Gaps = 18/465 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+SFY     + +A+++F  MP R+ VSWN+M+  F  NG  +  F    + +E  
Sbjct: 221 VSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKD 280

Query: 151 ---FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               +  D A+   +L  C R     V K +H L      ++EV V NAL+  Y KCG  
Sbjct: 281 DEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCI 340

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVM 265
           +  + +F     +NV++W  ++ G        +   L  +M    G +  + +T L++V 
Sbjct: 341 NDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVP 400

Query: 266 ACSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            C     L   +++H    K   + ++  + +A +  Y+KCGS+  A ++F         
Sbjct: 401 VCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVN 460

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++ G++Q+     ++  + +M  +G+  D   V ++L       SL LGK++H LI
Sbjct: 461 SWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLI 520

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I++    + FV   L+++Y  CG+L  +  +F  M  +  VSWN+M+  + ++G   +AL
Sbjct: 521 IRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERAL 580

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYAC 500
            L+ +M L GV+P +++ +S+  ACS +  +  G E     LK + E +         AC
Sbjct: 581 SLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAF------IAC 634

Query: 501 -VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            V+DM  + G ++E+      +  +  V  W A++    IHG ++
Sbjct: 635 SVIDMYAKNGSVMESFKVFNGLKER-SVASWNAMVMGYGIHGRAK 678



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 152/281 (54%), Gaps = 9/281 (3%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLIN 254
           +IT Y  CGS    R VF  +R +N+  W AVIS   +N+LY   L++FVKM    GL+ 
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLL- 181

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P++ T+   V AC+G+  +  G  +HG++ K  L  D+ + +AL+  Y   GSV DA ++
Sbjct: 182 PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRV 241

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI----DPNMVSAVLGVFGV 370
           F+   E + VS   ++  F+ NG  EE   L  +M++   EI    D   ++ VL V   
Sbjct: 242 FKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCAR 301

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
           D  +G+GK +H L +K        VNN L++MYSKCG + D+  +F     +N VSWN+M
Sbjct: 302 DREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTM 361

Query: 431 IAAFARHGNGFKALELYEEMKLEG--VEPTDVTFLSLLHAC 469
           +  F+  G+  K  +L  +M   G  +   +VT L+ +  C
Sbjct: 362 VGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC 402



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 9/404 (2%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N  V+   +++ Y  C    ++  +FD +  ++   WN ++S + RN  +      F 
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           + +       D  +F  ++ AC       V   +H LV      E+V V NAL++ Y   
Sbjct: 173 KMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTN 232

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG----LINPNSLTY 260
           GS S   +VF  M  RN+++W ++I     N L EE   L  +M          P+  T 
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            + +  C+  + +  G+ +HG+  KL+L  ++ + +ALMDMYSKCG + DA  IF+    
Sbjct: 293 ATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNN 352

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV---DTSLGLG 377
            + VS   ++ GF+  G   +   L  +M+  G ++  + V+ +L    V   ++ L   
Sbjct: 353 KNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVT-ILNAVPVCFEESVLPNL 411

Query: 378 KQIHSLIIKSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           K++H   +K +F  +N  V N  +  Y+KCG L  + +VF  +  +   SWN++I  +++
Sbjct: 412 KELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQ 471

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             +   +L+ Y +MK  G+ P   T  SLL ACS +  +  G E
Sbjct: 472 SSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKE 515


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 292/524 (55%), Gaps = 38/524 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLL  Y K   M +A  +F +MP    VSWN M++G+ +  +      + +R    GF 
Sbjct: 291 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGF- 349

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ ++  +L AC                                    K G   +GR+
Sbjct: 350 EPDEITYVNMLVAC-----------------------------------IKSGDIEAGRQ 374

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M   ++ +W  ++SG  QN+ ++E +KLF +M    ++P+  T    + + +G+  
Sbjct: 375 MFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMML 434

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQ+H +  K   ++D+ + S L+ MYSKCG VE A +IF+   ELD V    ++ G
Sbjct: 435 LEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAG 494

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            + N  ++EA   F KM + G+       + VL      +SL  G+Q+HS I +  + ++
Sbjct: 495 LSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND 554

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + LI+MYSKCGD++ +  VF  M  +N+V+WN MI  +A++G G +A+ LYE+M  
Sbjct: 555 AFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIG 614

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G +P  +TF+++L ACSH GLV+ G++   SM + H + P  +HY C++D +GRAG L 
Sbjct: 615 SGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLH 674

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA   I++MP K D ++W+ LL +C ++ D  + + AAE+LF   P + APY+L+ANIYS
Sbjct: 675 EAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 734

Query: 573 CSGRWKERAKAIKR-MKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             GRW + AKA++  M    V K+ G SWIE +  + +F+VDD 
Sbjct: 735 SLGRWDD-AKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDN 777



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 214/448 (47%), Gaps = 33/448 (7%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           + ++   NA++ +Y K         +F EM  RN+++W  +IS L +N   ++ L ++ +
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           M      P   T  S + AC  L  +  GR+ HGI  K+ L +++ + +AL+ MY+KC  
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           + DA Q F    E + VS T ++ G A +    EA +LF  M++  I +D   +S+VLGV
Sbjct: 188 IGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 247

Query: 368 --------FGVDTSLGL------GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
                   FG+  S  +      G+Q+H L IK  F S+  +NN L++MY+K G+++ + 
Sbjct: 248 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 307

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            +F  M   + VSWN MIA + +     KA+E  + M+  G EP ++T++++L AC   G
Sbjct: 308 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 367

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKPD---- 526
            +  G +    M+     SP    +  ++    +     EA      M    V PD    
Sbjct: 368 DIEAGRQMFDGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTL 422

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            ++  +L G   + G  ++   + + +F       +  I M   YS  G+ +   +   R
Sbjct: 423 AIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGM---YSKCGKVEMAKRIFDR 479

Query: 587 MKEMGV----DKETGISWIEIEKQVHSF 610
           + E+ +        G+S   ++K+  +F
Sbjct: 480 IAELDIVCWNSMMAGLSLNSLDKEAFTF 507



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 224/495 (45%), Gaps = 83/495 (16%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           + F+    +++Y        WN++L  Y K  ++ +A  LF +MP R+ VSWNT++S   
Sbjct: 61  RLFDQMPKRDIYT-------WNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALT 113

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEE 189
           RNG      G + R    GF       FT+  +LSAC         +  H +    G + 
Sbjct: 114 RNGFEQKALGVYYRMSREGFV---PTHFTLASVLSACGALVDVECGRRCHGISIKIGLDN 170

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
            + VGNAL+  Y KC       + FG++   N +++TA++ GL  +    E  +LF  M 
Sbjct: 171 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLML 230

Query: 250 LGLINPNSLTYLSSVMACSG--------------LQALCEGRQIHGILWKLALQSDLCIE 295
              I+ +S++  S +  CS               L +   G+Q+H +  K   +SDL + 
Sbjct: 231 RNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLN 290

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+DMY+K G+++ A  IF    E+  VS  V++ G+ Q     +A++   +M   G E
Sbjct: 291 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFE 350

Query: 356 IDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            D     NM+ A +                                       K GD+E 
Sbjct: 351 PDEITYVNMLVACI---------------------------------------KSGDIEA 371

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
             ++F  M+  +  SWN++++ ++++ N  +A++L+ EM+   V P   T   +L + + 
Sbjct: 372 GRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLA- 430

Query: 472 VGLVNKGMEFLKSMTEVHRISPRA----EHY--ACVVDMVGRAGLLIEARSFIERMPVKP 525
                 GM  L+   +VH +S +A    + Y  + ++ M  + G +  A+   +R+  + 
Sbjct: 431 ------GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRI-AEL 483

Query: 526 DVLVWQALLGACSIH 540
           D++ W +++   S++
Sbjct: 484 DIVCWNSMMAGLSLN 498



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 223/478 (46%), Gaps = 61/478 (12%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N   + N+LL  Y KC  + +A++ F D+P  + VS+  M+ G   + + +  F  F+
Sbjct: 168 LDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFR 227

Query: 145 RSLELGFYQLDQASFTIILSACDRS---ELSLVS-----------KMIHCLVYLCGYEEE 190
             L    + +D  S + +L  C R    E  L             + +HCL    G+E +
Sbjct: 228 LMLRNRIH-VDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESD 286

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + + N+L+  Y K G+  S   +F  M   +V++W  +I+G  Q     + ++   +M  
Sbjct: 287 LHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQY 346

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               P+ +TY++ ++AC                                    K G +E 
Sbjct: 347 HGFEPDEITYVNMLVAC-----------------------------------IKSGDIEA 371

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
             Q+F+        S   IL G++QN   +EA++LF +M    +  D   ++ +L     
Sbjct: 372 GRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAG 431

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L  G+Q+H++  K+ F ++ ++ +GLI MYSKCG +E + ++F R+A  + V WNSM
Sbjct: 432 MMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSM 491

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +A  + +    +A   +++M+ +G+ P+  ++ ++L  C+ +  +++G +     +++ R
Sbjct: 492 MAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQV---HSQIAR 548

Query: 491 ISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
                + +  + ++DM  + G +  AR ++  M +  + + W  +     IHG ++ G
Sbjct: 549 EGYMNDAFVGSALIDMYSKCGDVDAAR-WVFDMMLGKNTVTWNEM-----IHGYAQNG 600



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 116/253 (45%), Gaps = 32/253 (12%)

Query: 259 TYLSSVM-ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE- 316
           TYL+S++  C   +A   G+ IH  + +  L  D  + + L++ Y+KC +++ + ++F+ 
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 317 ----------------------------FAE--ELDGVSMTVILVGFAQNGFEEEAMQLF 346
                                       FAE  E + VS   ++    +NGFE++A+ ++
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVY 125

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +M + G       +++VL   G    +  G++ H + IK    +N +V N L+ MY+KC
Sbjct: 126 YRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKC 185

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
             + D+I+ F  +   N VS+ +M+   A      +A  L+  M    +    V+  S+L
Sbjct: 186 RCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVL 245

Query: 467 HACSHVGLVNKGM 479
             CS  G    G+
Sbjct: 246 GVCSRGGCGEFGL 258


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 302/550 (54%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLL+FY K   + +A ++FD MP+RD V+WN+MV G++ NG   +    F+   E    
Sbjct: 147 NSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQV 206

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D       L+AC      +  + +H  V   G E++V VG +L+  Y KCG+ +S   
Sbjct: 207 QHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEG 266

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M  R V+TW  +I G   N   EE    FV+M         +T ++ + AC+  ++
Sbjct: 267 MFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTES 326

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + +      + +E+AL++MYSK G V+ +  IF        VS   ++  
Sbjct: 327 SLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAA 386

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +       EA+ LF++++   +  D   +SAV+  F +   L   +Q+HS I++ D+  N
Sbjct: 387 YMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGEN 446

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N +++MY++CGD+  S K+F +MA ++ +SWN++I  +A HG G  ALE++ EMK 
Sbjct: 447 TLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKS 506

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G++P + TF+S+L ACS  G+ ++G      M   + I P+ EHY C+ D++GRAG L 
Sbjct: 507 NGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLR 566

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           E   FIE +P+ P   +W +LL A     D ++ +YAAE++F  + D+   Y++++++Y+
Sbjct: 567 EVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYA 626

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +GRW++  +    M E G+ +    S +E+     SFV  D  HPQ+ TIH V   L R
Sbjct: 627 DAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDVLSR 686

Query: 633 LMIDEGYVPN 642
            + +  Y  N
Sbjct: 687 KIGETDYPRN 696



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 221/466 (47%), Gaps = 22/466 (4%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  +    +M +A+      P  D    N ++ GF   G  +     ++  L  G  +
Sbjct: 48  SLVLSHAAAGRMHDALAAVRSSP--DAFLHNVVIRGFADAGLPEAALAAYRAMLAAGA-R 104

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRK 212
            D+ +F +++  C R       +  H      G    EV  GN+L+  Y K G  +   +
Sbjct: 105 PDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAER 164

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQ 271
           VF  M VR+++TW +++ G V N L    L  F +MH GL +  + +  ++++ AC    
Sbjct: 165 VFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDS 224

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +GR++H  + +  L+ D+ + ++L+DMY KCG++  A  +F        V+   ++ 
Sbjct: 225 ALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIG 284

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+A NG  EEA   FV+M   G +++      +L       S   G+ +H  + +S F  
Sbjct: 285 GYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLP 344

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  +   L+ MYSK G ++ S  +F +M  +  VSWN+MIAA+       +A+ L+ E+ 
Sbjct: 345 HVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELL 404

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMV 505
            + + P   T  +++ A   +GL       L+   ++H    R ++         V+ M 
Sbjct: 405 NQPLYPDYFTMSAVVPAFVLLGL-------LRQCRQMHSYIVRLDYGENTLVTNAVMHMY 457

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            R G ++ +R   ++M  K DV+ W  ++   +IHG    GK A E
Sbjct: 458 ARCGDVVSSRKIFDKMAGK-DVISWNTIIMGYAIHGQ---GKIALE 499



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 182/368 (49%), Gaps = 10/368 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SLL  Y KC  + +A  +F  MP R  V+WN M+ G+  NG  +  F  F +    G
Sbjct: 247 VGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEG 306

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +Q++  +   +L+AC ++E SL  + +H  V    +   V +  AL+  Y K G   S 
Sbjct: 307 -HQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSS 365

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +FG+M  + +++W  +I+  +  ++Y E + LF+++    + P+  T  + V A   L
Sbjct: 366 ETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLL 425

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L + RQ+H  + +L    +  + +A+M MY++CG V  + +IF+     D +S   I+
Sbjct: 426 GLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTII 485

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSD 388
           +G+A +G  + A+++F +M   G++ + +   +VL    V    G+  +  I   +++ D
Sbjct: 486 MGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVS---GMADEGWIQFNLMQRD 542

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALE 445
           +   P + +   + ++  + GDL + +K    +    +   W S++ A +R+ N     E
Sbjct: 543 YGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTA-SRNRNDIDIAE 601

Query: 446 LYEEMKLE 453
              E   E
Sbjct: 602 YAAERIFE 609



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 1/179 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +LL  Y K  +++++  +F  M  +  VSWN M++ ++    ++     F   L  
Sbjct: 347 VLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQ 406

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             Y  D  + + ++ A     L    + +H  +    Y E   V NA++  Y +CG   S
Sbjct: 407 PLYP-DYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVS 465

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            RK+F +M  ++VI+W  +I G   +   +  L++F +M    + PN  T++S + ACS
Sbjct: 466 SRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACS 524



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T++ N+++  Y +C  + ++ K+FD M  +D +SWNT++ G+  +G+  +    F     
Sbjct: 447 TLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKS 506

Query: 149 LGFYQLDQASFTIILSACDRSELS 172
            G  Q ++++F  +L+AC  S ++
Sbjct: 507 NGL-QPNESTFVSVLTACSVSGMA 529


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 324/626 (51%), Gaps = 31/626 (4%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLS 97
           ++  +NY     L + SA   H H G ++H   I      D            +  +LL 
Sbjct: 5   RVAPNNYTFPFALKACSALADH-HCGRAIHRHAIHAGLQAD----------LFVSTALLD 53

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y+KC  + +A  +F  MP RD V+WN M++G+  +G +         S+++  ++L   
Sbjct: 54  MYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHL-LSMQMQMHRLRPN 112

Query: 158 SFTII----LSACDRSELSLVSKMIHCLVYLCGYEEE---------VTVGNALITSYFKC 204
           + T++    L A   +     S   +C +  C +            V +G AL+  Y KC
Sbjct: 113 ASTLVALLPLLAQQGALAQGTSVHAYC-IRACLHPNRNSKSKLTDGVLLGTALLDMYAKC 171

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM---HLGLINPNSLTYL 261
           GS    R+VF  M  RN +TW+A+I G V      +   LF  M    L  ++P S+   
Sbjct: 172 GSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA-- 229

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ AC+ L  L  G Q+H +L K  + +DL   ++L+ MY+K G ++ A  +F+     
Sbjct: 230 SALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK 289

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D VS + ++ G+ QNG  EEA  +F KM    +E D   + +++       +L  G+  H
Sbjct: 290 DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSH 349

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             +I     S   + N LI+MY+KCG ++ S +VF+ M  R+ VSWN+MIA +  HG G 
Sbjct: 350 GSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 409

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +A  L+ EM   G  P  VTF+ LL ACSH GLV +G  +   M   + ++PR EHY C+
Sbjct: 410 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICM 469

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VD++ R G L EA  FI+ MP++ DV VW ALLGAC ++ + ++GK  +  +    P+  
Sbjct: 470 VDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGT 529

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             ++L++NIYS +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HPQ+ 
Sbjct: 530 GNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSP 589

Query: 622 TIHGVLAELLRLMIDEGYVPNKRFIL 647
            I+  L  +L  +   GY P+  F+L
Sbjct: 590 EIYRELDNILVGIKKLGYQPDTSFVL 615


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 268/456 (58%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           + N L+  Y KCGS    ++VF  M+ +NV +WT +++G VQ+    E ++LF +M    
Sbjct: 78  LSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEG 137

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
             P+ +  L  + +C   +AL +GR+IH       + SDL   +A+++MY KCGS+ +A+
Sbjct: 138 ELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAF 197

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F    E + +S + ++  F QN   +EA+  F  M + G+E+D     +VL  +    
Sbjct: 198 AVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVG 257

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L LGK +H  I+ +   ++  V N L+NMY KCG  +D+  VF  M  +N VSWN+M+A
Sbjct: 258 ALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLA 317

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           A+ ++G   +AL L++ M LEGV P D+TF+++L+ CSH G     +     M +   I+
Sbjct: 318 AYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGIT 377

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           PR  H+ C++DM+GR+G L EA   I+ MPV  D ++W +LL AC  H D +    AAE+
Sbjct: 378 PREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEE 437

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
            F  +P   A YI+++N+Y+   +W E AK  KRM++ GV K+ G SWIEI+KQVH FV 
Sbjct: 438 AFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVA 497

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            D +HP    I   L  L+  M  +GY P+++ ++H
Sbjct: 498 GDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIH 533



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 175/349 (50%), Gaps = 7/349 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KC  +  A ++FD M  ++  SW  +++GF+++G        F R  + G  
Sbjct: 80  NLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGEL 139

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +    + +C  ++     + IH     CG + ++   NA+I  Y KCGS      
Sbjct: 140 P-DRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFA 198

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  +NVI+W+ +I+   QN+L +E L  F  M    +  + +TY+S + A + + A
Sbjct: 199 VFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGA 258

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ +H  +    L + + + + L++MY KCGS +DA  +F+   E + VS   +L  
Sbjct: 259 LELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAA 318

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI-HSLIIKSDFTS 391
           + QNG   EA+ LF  M   G+   PN ++ V  ++    S      + H + ++ DF  
Sbjct: 319 YGQNGRSREALALFDSMDLEGVR--PNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGI 376

Query: 392 NPF-VNNG-LINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARH 437
            P  V+ G LI+M  + G LE++ ++   M  P ++V W S++ A   H
Sbjct: 377 TPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTH 425



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 170/328 (51%), Gaps = 5/328 (1%)

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           +  C+G +AL EGR+IH  +    L     + + L+DMY KCGS+ +A ++F+  +  + 
Sbjct: 48  IRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNV 107

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
            S T+++ GF Q+G   EA+QLF +M + G   D   +   +   G   +L  G++IHS 
Sbjct: 108 FSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSA 167

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
                  S+    N +INMY KCG + ++  VF+RM  +N +SW++MIAAF ++    +A
Sbjct: 168 AASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEA 227

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L  ++ M+ EG+E   +T++S+L A + VG +  G + L        +         +V+
Sbjct: 228 LLFFKLMQQEGMELDRITYVSVLDAYTSVGALELG-KALHVRIVYAGLDTSIVVGNTLVN 286

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M G+ G   +AR   + M V+ +V+ W A+L A   +G S       + + L +   P  
Sbjct: 287 MYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAAYGQNGRSREALALFDSMDL-EGVRPND 344

Query: 564 YILMANIYSC--SGRWKERAKAIKRMKE 589
              +  +Y C  SG++K+       M++
Sbjct: 345 ITFVTILYCCSHSGKFKDAVSHFVEMRQ 372



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 16/157 (10%)

Query: 18  SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKE-----GHFHLGPSLHASFIK 72
           S++++ F    + D      KL+    +++ R+  +S  +     G   LG +LH   + 
Sbjct: 212 STMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVY 271

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
                       +  + V+ N+L++ Y KC    +A  +FD M  ++ VSWN M++ + +
Sbjct: 272 A----------GLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           NG        F  S++L   + +  +F  IL  C  S
Sbjct: 322 NGRSREALALFD-SMDLEGVRPNDITFVTILYCCSHS 357


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 292/524 (55%), Gaps = 38/524 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLL  Y K   M +A  +F +MP    VSWN M++G+ +  +      + +R    GF 
Sbjct: 262 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGF- 320

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ ++  +L AC                                    K G   +GR+
Sbjct: 321 EPDEITYVNMLVAC-----------------------------------IKSGDIEAGRQ 345

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M   ++ +W  ++SG  QN+ ++E +KLF +M    ++P+  T    + + +G+  
Sbjct: 346 MFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMML 405

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GRQ+H +  K   ++D+ + S L+ MYSKCG VE A +IF+   ELD V    ++ G
Sbjct: 406 LEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAG 465

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            + N  ++EA   F KM + G+       + VL      +SL  G+Q+HS I +  + ++
Sbjct: 466 LSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMND 525

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + LI+MYSKCGD++ +  VF  M  +N+V+WN MI  +A++G G +A+ LYE+M  
Sbjct: 526 AFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIG 585

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G +P  +TF+++L ACSH GLV+ G++   SM + H + P  +HY C++D +GRAG L 
Sbjct: 586 SGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLH 645

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA   I++MP K D ++W+ LL +C ++ D  + + AAE+LF   P + APY+L+ANIYS
Sbjct: 646 EAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYS 705

Query: 573 CSGRWKERAKAIKR-MKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             GRW + AKA++  M    V K+ G SWIE +  + +F+VDD 
Sbjct: 706 SLGRWDD-AKAVRELMSYNQVVKDPGYSWIEHKNGMQAFMVDDN 748



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/476 (26%), Positives = 228/476 (47%), Gaps = 35/476 (7%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L  C   +  L  K+IH  +      ++  + N LI  Y KC +  + R++F +M  R+
Sbjct: 11  LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSL-TYLSSVMACSGLQALCEGRQI 279
           + TW A++    +    E+   LF +M    +++ N+L + L+   AC  L  +  GR+ 
Sbjct: 71  IYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRC 130

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HGI  K+ L +++ + +AL+ MY+KC  + DA Q F    E + VS T ++ G A +   
Sbjct: 131 HGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQV 190

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGV--------FGVDTSLGL------GKQIHSLII 385
            EA +LF  M++  I +D   +S+VLGV        FG+  S  +      G+Q+H L I
Sbjct: 191 NEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTI 250

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F S+  +NN L++MY+K G+++ +  +F  M   + VSWN MIA + +     KA+E
Sbjct: 251 KHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIE 310

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
             + M+  G EP ++T++++L AC   G +  G +    M+     SP    +  ++   
Sbjct: 311 YLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSLSSWNTILSGY 365

Query: 506 GRAGLLIEARSFIERM---PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            +     EA      M    V PD     ++  +L G   + G  ++   + + +F    
Sbjct: 366 SQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 425

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV----DKETGISWIEIEKQVHSF 610
              +  I M   YS  G+ +   +   R+ E+ +        G+S   ++K+  +F
Sbjct: 426 YLASGLIGM---YSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTF 478



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/478 (23%), Positives = 223/478 (46%), Gaps = 61/478 (12%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + N   + N+LL  Y KC  + +A++ F D+P  + VS+  M+ G   + + +  F  F+
Sbjct: 139 LDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFR 198

Query: 145 RSLELGFYQLDQASFTIILSACDR---SELSLVS-----------KMIHCLVYLCGYEEE 190
             L    + +D  S + +L  C R    E  L             + +HCL    G+E +
Sbjct: 199 LMLRNRIH-VDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESD 257

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + + N+L+  Y K G+  S   +F  M   +V++W  +I+G  Q     + ++   +M  
Sbjct: 258 LHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQY 317

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               P+ +TY++ ++AC                                    K G +E 
Sbjct: 318 HGFEPDEITYVNMLVAC-----------------------------------IKSGDIEA 342

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
             Q+F+        S   IL G++QN   +EA++LF +M    +  D   ++ +L     
Sbjct: 343 GRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAG 402

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L  G+Q+H++  K+ F ++ ++ +GLI MYSKCG +E + ++F R+A  + V WNSM
Sbjct: 403 MMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSM 462

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +A  + +    +A   +++M+ +G+ P+  ++ ++L  C+ +  +++G +     +++ R
Sbjct: 463 MAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQV---HSQIAR 519

Query: 491 ISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
                + +  + ++DM  + G +  AR ++  M +  + + W  +     IHG ++ G
Sbjct: 520 EGYMNDAFVGSALIDMYSKCGDVDAAR-WVFDMMLGKNTVTWNEM-----IHGYAQNG 571



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/515 (23%), Positives = 229/515 (44%), Gaps = 93/515 (18%)

Query: 56  KEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDM 115
           K+ H   G  +HA  +++           + + T + N L+ FY KC+ +  + +LFD M
Sbjct: 18  KKAHL-AGKLIHAHMLRS----------RLSDDTFLSNRLIEFYAKCNAIDASRRLFDQM 66

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL--SL 173
           P RD  +WN ++  + +  E +     F    E         S+  ++SA  R+    +L
Sbjct: 67  PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNI-----VSWNTLISALTRNGACGAL 121

Query: 174 VS----KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           V     +  H +    G +  + VGNAL+  Y KC       + FG++   N +++TA++
Sbjct: 122 VDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMM 181

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG--------------LQALCE 275
            GL  +    E  +LF  M    I+ +S++  S +  CS               L +   
Sbjct: 182 GGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVH 241

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+Q+H +  K   +SDL + ++L+DMY+K G+++ A  IF    E+  VS  V++ G+ Q
Sbjct: 242 GQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQ 301

Query: 336 NGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
                +A++   +M   G E D     NM+ A +                          
Sbjct: 302 KSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACI-------------------------- 335

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
                        K GD+E   ++F  M+  +  SWN++++ ++++ N  +A++L+ EM+
Sbjct: 336 -------------KSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQ 382

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHY--ACVVDMV 505
              V P   T   +L + +       GM  L+   +VH +S +A    + Y  + ++ M 
Sbjct: 383 FRSVHPDRTTLAIILSSLA-------GMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMY 435

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            + G +  A+   +R+  + D++ W +++   S++
Sbjct: 436 SKCGKVEMAKRIFDRI-AELDIVCWNSMMAGLSLN 469



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 143/294 (48%), Gaps = 1/294 (0%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
           K  E       +      + + ++L   +K   +    ++FD M      SWNT++SG+ 
Sbjct: 307 KAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYS 366

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           +N         F R ++      D+ +  IILS+     L    + +H +     +  ++
Sbjct: 367 QNENHKEAVKLF-REMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI 425

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            + + LI  Y KCG     +++F  +   +++ W ++++GL  N L +E    F KM   
Sbjct: 426 YLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREK 485

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+  +Y + +  C+ L +L +GRQ+H  + +    +D  + SAL+DMYSKCG V+ A
Sbjct: 486 GMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAA 545

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             +F+     + V+   ++ G+AQNG  +EA+ L+  M+ +G + D     AVL
Sbjct: 546 RWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVL 599



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 107/218 (49%), Gaps = 3/218 (1%)

Query: 259 TYLSSVM-ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           TYL+S++  C   +A   G+ IH  + +  L  D  + + L++ Y+KC +++ + ++F+ 
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL--GVFGVDTSLG 375
             + D  +   IL  + +    E+A  LF +M +  I     ++SA+   G  G    + 
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVE 125

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            G++ H + IK    +N +V N L+ MY+KC  + D+I+ F  +   N VS+ +M+   A
Sbjct: 126 CGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLA 185

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
                 +A  L+  M    +    V+  S+L  CS  G
Sbjct: 186 DSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG 223



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   + ++L+  Y KC  +  A  +FD M  ++TV+WN M+ G+ +NG  D     ++  
Sbjct: 524 NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDM 583

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           +  G  + D  +F  +L+AC  S L
Sbjct: 584 IGSG-EKPDGITFVAVLTACSHSGL 607


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 193/548 (35%), Positives = 298/548 (54%), Gaps = 10/548 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L+  Y +C  +  A ++FD M   D V + +++S F RNGEF++      + L+ G
Sbjct: 151 IGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG 210

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGYEEE-VTVGNALITSYFKCGSSS 208
             + ++ + T IL+AC R    ++ + IH  L+   G   + V    ALI  Y + G   
Sbjct: 211 L-KPNEHTMTTILTACPR----VLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFK 265

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             + VF  +  +NV++W +++   +++   EE L++F  M    ++PN    LS V+   
Sbjct: 266 LAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFA-LSIVLGAC 324

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   L  GRQ+H    K  L +D+ + +AL+ MY + G VE+   +    E  D VS T 
Sbjct: 325 GSIGL--GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 382

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
            +    QNGF E+A+ L  +M   G   +    S+VL       SL  G Q H L +K  
Sbjct: 383 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 442

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S     N LINMYSKCG +  +   F  M   +  SWNS+I   A+HG+  KALE++ 
Sbjct: 443 CDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFS 502

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P D TFL +L  C+H G+V +G  F + M + +  +P   HYAC++DM+GR 
Sbjct: 503 KMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRN 562

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G   EA   I  MP +PD L+W+ LL +C +H + ++GK AA++L        A Y+LM+
Sbjct: 563 GRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMS 622

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+  G W++  K  +RM E GV K+ G SWIEI  +VH+F   D  HP +D+I+ +L 
Sbjct: 623 NIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLG 682

Query: 629 ELLRLMID 636
           EL+ +M D
Sbjct: 683 ELVAVMQD 690



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 132/454 (29%), Positives = 238/454 (52%), Gaps = 20/454 (4%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           L+  +K  ++ +A+ LFD MP ++ V+W +++SG+ RNG  +     F   +E G    D
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPND 114

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
            A    +++  D   L    + +H L    G+  +  +G+ LI  Y +CGS  + ++VF 
Sbjct: 115 FACNAALVACADLGALR-AGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
            M   +V+ +T++IS   +N  +E   +  ++M    + PN  T  + + AC  +     
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL---- 229

Query: 276 GRQIHG-ILWKLALQSDLCIES-ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           G+QIHG ++ K+ L+S     S AL+D YS+ G  + A  +F+     + VS   ++  +
Sbjct: 230 GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLY 289

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            ++G  EEA+Q+F  M+  G++ +   +S VLG  G   S+GLG+Q+H   IK D  ++ 
Sbjct: 290 IRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITDI 346

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V+N L++MY + G +E+   + +++   + VSW + I+A  ++G G KA+ L  +M  E
Sbjct: 347 RVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSE 406

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAG 509
           G  P    F S+L +C+ V  +++GM+F    LK   +    +  A     +++M  + G
Sbjct: 407 GFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNA-----LINMYSKCG 461

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            +  AR   + M    DV  W +L+   + HGD+
Sbjct: 462 QMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDA 494



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 178/354 (50%), Gaps = 11/354 (3%)

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
           C    +V +    +    K G  +    +F  M  +NV+ WT+V+SG  +N   E  L +
Sbjct: 42  CAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAM 101

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    + PN     ++++AC+ L AL  G Q+H +  +     D  I S L++MYS+
Sbjct: 102 FADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSR 161

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           CGS+  A ++F+  +  D V  T ++  F +NG  E A +  ++M+K G++ + + ++ +
Sbjct: 162 CGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           L          LG+QIH  +IK     + + + +  LI+ YS+ G+ + +  VF  +  +
Sbjct: 222 LTA----CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK 277

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           N VSW SM+  + R G   +AL+++ +M  EGV+P +     +L AC  +GL   G +  
Sbjct: 278 NVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLH 334

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            S  + H +         ++ M GR GL+ E  + + ++   PD++ W   + A
Sbjct: 335 CSAIK-HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISA 386


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 306/559 (54%), Gaps = 2/559 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y KC  +R A   F  +  RD VSW  M++  +++ +F +    ++R    G
Sbjct: 143 VGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDG 202

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                   +T+  +  D   LS   K I+ LV     E +V V N+ +  +   G     
Sbjct: 203 VVPNKITLYTVFNAYGDPHYLS-EGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDA 261

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F +M  R+V+TW  VI+  VQN+ + E ++LF ++    I  N +T++  +   + L
Sbjct: 262 RRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSL 321

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L +G+ IH ++ +     D+ + +ALM +Y +C +   AW+IF      D ++ TV+ 
Sbjct: 322 TSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMC 381

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           V +AQNGF +EA+QLF +M   G       + AVL       +L  G+QIHS II++ F 
Sbjct: 382 VAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFR 441

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               V   LINMY KCG + ++  VF +MA R+ + WNSM+ A+A+HG   + L+L+ +M
Sbjct: 442 MEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQM 501

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +L+G +   V+F+S+L A SH G V  G ++  +M +   I+P  E Y CVVD++GRAG 
Sbjct: 502 QLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGR 561

Query: 511 LIEARSFIERMP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           + EA   + ++    PD ++W  LLGAC  H  ++  K AAE++    P     Y++++N
Sbjct: 562 IQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSN 621

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+ +G W    +  K M+  GV KE G S IEI  +VH F+  D+ HP+   I+  L  
Sbjct: 622 VYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDV 681

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L   M   GY+P+ + ILH
Sbjct: 682 LNSEMRAAGYIPDTKMILH 700



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 135/455 (29%), Positives = 245/455 (53%), Gaps = 7/455 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            ++   L+  Y +C  +  A ++F+ +  +D  +W  M+  + + G++D   G F +  E
Sbjct: 40  NLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQE 99

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                  + ++  IL+AC  +E SL   M IH  +   G+E +V VG ALI  Y KCGS 
Sbjct: 100 EDVMPT-KVTYVAILNACASTE-SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSV 157

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                 F  +  R+V++WTA+I+  VQ+  +     L+ +M L  + PN +T  +   A 
Sbjct: 158 RGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAY 217

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                L EG+ I+ ++    ++SD+ + ++ M+M+   G + DA ++FE   + D V+  
Sbjct: 218 GDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWN 277

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           +++  + QN    EA++LF ++ + GI+ +      +L V+   TSL  GK IH L+ ++
Sbjct: 278 IVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA 337

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +  +  V   L+++Y +C     + K+F  M  ++ ++W  M  A+A++G   +AL+L+
Sbjct: 338 GYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLF 397

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVG 506
           +EM+LEG  PT  T +++L  C+H+  + KG +    + E   R+    E    +++M G
Sbjct: 398 QEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE--TALINMYG 455

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + G + EARS  E+M  K D+LVW ++LGA + HG
Sbjct: 456 KCGKMAEARSVFEKM-AKRDILVWNSMLGAYAQHG 489



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 170/327 (51%)

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           ++ D A F  +L  C  ++     + +H  V   G+E+   V   LI  Y +CGS    +
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +VF  +  ++V  WT +I    Q   Y+  L +F +M    + P  +TY++ + AC+  +
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           +L +G +IHG + +   + D+ + +AL++MY+KCGSV  AW  F+  E  D VS T ++ 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
              Q+     A  L+ +M   G+  +   +  V   +G    L  GK I+SL+      S
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  V N  +NM+   G L D+ ++F  M  R+ V+WN +I  + ++ N  +A+ L+  ++
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKG 478
            +G++  D+TF+ +L+  + +  + KG
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKG 327



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 178/370 (48%), Gaps = 37/370 (10%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V    V WN +++FY++ +    AV+LF  +  +D +  N +                  
Sbjct: 269 VDRDVVTWNIVITFYVQNENFGEAVRLFGRL-QQDGIKANDI------------------ 309

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                        +F ++L+           K+IH LV   GY+ +V V  AL++ Y +C
Sbjct: 310 -------------TFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRC 356

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
            +     K+F +M  ++VITWT +     QN   +E L+LF +M L    P S T ++ +
Sbjct: 357 EAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 416

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
             C+ L AL +GRQIH  + +   + ++ +E+AL++MY KCG + +A  +FE   + D +
Sbjct: 417 DTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDIL 476

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
               +L  +AQ+G+ +E +QLF +M   G + D     +VL       S+  G Q    +
Sbjct: 477 VWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAM 536

Query: 385 IKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNG 440
           ++ DF  T  P +   ++++  + G +++++ +  +++    + + W +++ A   H   
Sbjct: 537 LQ-DFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKT 595

Query: 441 FKALELYEEM 450
            +A    E++
Sbjct: 596 DQAKAAAEQV 605



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 91/179 (50%), Gaps = 2/179 (1%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+++H  +    F  N  V   LI MY++CG + ++ +VF  +  ++  +W  MI  + +
Sbjct: 24  GRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQ 83

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G+  +AL ++ +M+ E V PT VT++++L+AC+    +  GME    + +         
Sbjct: 84  QGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQ-QGFEGDVF 142

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
               +++M  + G +  A    +R+  + DV+ W A++ AC  H    + ++   ++ L
Sbjct: 143 VGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMIAACVQHDQFALARWLYRRMQL 200



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           PTS+T   VLD    ++ L            G  +H+  I        +N + +    V+
Sbjct: 407 PTSATLVAVLDTCAHLAAL----------QKGRQIHSHII--------ENGFRME--MVV 446

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
             +L++ Y KC +M  A  +F+ M  RD + WN+M+  + ++G +D     F + ++L  
Sbjct: 447 ETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQ-MQLDG 505

Query: 152 YQLDQASFTIILSACDRS 169
            + D  SF  +LSA   S
Sbjct: 506 EKADAVSFVSVLSALSHS 523


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 308/569 (54%), Gaps = 32/569 (5%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           M  A  +FD MP  +   WN M+ G+ R G  +     +   LE G    D+ ++  +L 
Sbjct: 69  MEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMP-DEYTYPFLLK 127

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
              R       + +H  +   G+   V V NALI  Y   G  S  R VF      +V+T
Sbjct: 128 RFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVT 187

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W  +ISG  +++ ++E +KLF +M    + P+S+T +S + ACS L+ L  G+++H  + 
Sbjct: 188 WNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVK 247

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF--------AQN 336
            L ++    +E+AL+DMY+ CG ++ A  IF+  +  D +S T I+ GF        A+N
Sbjct: 248 DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARN 307

Query: 337 GFEE-----------------------EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
            F++                       E + LF +M  A I+ D   + ++L       +
Sbjct: 308 YFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGA 367

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L LG+ I + I K++   + FV N LI+MY  CG++E +I++F+ M  R+ +SW ++I  
Sbjct: 368 LELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG 427

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
            A +G G +AL+++ +M    + P +VT + +L AC+H G+V+KG +F   MT  H I P
Sbjct: 428 LAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEP 487

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
              HY C+VD++GRAG L EA   I+ MPVKP+ +VW +LLGAC +H D EM + AA+++
Sbjct: 488 NVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQI 547

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P++ A Y+L+ NIY+   RW++  +  K M + G+ K  G S IE+   VH FV  
Sbjct: 548 LELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAG 607

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           D++HPQ+  I+  L E+   +   GY P+
Sbjct: 608 DQVHPQSKEIYSKLDEMSVDLKFAGYSPD 636



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 197/414 (47%), Gaps = 46/414 (11%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y    ++  A  +FD     D V+WN M+SG+ R+ +FD     F    E+ 
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD---EME 212

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             ++  +S T+  +LSAC + +   V K +H  V     E    + NALI  Y  CG   
Sbjct: 213 RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 209 SGRKVFGEMRVRNVITWTAVISGL-------------------------------VQNQL 237
           +   +F  M+ R+VI+WTA+++G                                +Q   
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           ++E L LF +M    I P+  T +S + AC+ L AL  G  I   + K  ++ D  + +A
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNA 392

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMY  CG+VE A +IF      D +S T ++ G A NG+ EEA+ +F +M+KA I   
Sbjct: 393 LIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT-- 450

Query: 358 PNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNG-LINMYSKCGDLEDSI 413
           P+ V+ + GV    T  G+   GK+  + +           + G ++++  + G L+++ 
Sbjct: 451 PDEVTCI-GVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAH 509

Query: 414 KVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           +V   M  + NS+ W S++ A   H +   A E+  +  LE +EP +     LL
Sbjct: 510 EVIKNMPVKPNSIVWGSLLGACRVHRDEEMA-EMAAQQILE-LEPENGAVYVLL 561



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 171/371 (46%), Gaps = 33/371 (8%)

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R VF  M   N   W  +I G  +       + ++ +M    + P+  TY   +
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
              +   A+  GR++H  + KL   S++ +++AL+ +YS  G V  A  +F+ + + D V
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           +  V++ G+ ++   +E+M+LF +M +  +      + +VL        L +GK++H  +
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG------ 438
                     + N LI+MY+ CGD++ ++ +F  M  R+ +SW +++  F   G      
Sbjct: 247 KDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLAR 306

Query: 439 ------------------------NGFK-ALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
                                   N FK  L L+ EM+   ++P + T +S+L AC+H+G
Sbjct: 307 NYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLG 366

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +  G E++K+  + + I   +     ++DM    G + +A      MP + D + W A+
Sbjct: 367 ALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKISWTAV 424

Query: 534 LGACSIHGDSE 544
           +   +I+G  E
Sbjct: 425 IFGLAINGYGE 435



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 77  FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           FDN    +V    + W ++++ +    Q+  A   FD MP RD VSW  M+ G+L+   F
Sbjct: 278 FDNMKSRDV----ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRF 333

Query: 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNA 196
                 F R ++    + D+ +   IL+AC       + + I   +     + +  VGNA
Sbjct: 334 KEVLSLF-REMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNA 392

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           LI  YF CG+     ++F  M  R+ I+WTAVI GL  N   EE L +F +M    I P+
Sbjct: 393 LIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPD 452

Query: 257 SLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
            +T +  + AC+    + +G++    +  +  ++ ++     ++D+  + G +++A ++ 
Sbjct: 453 EVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVI 512

Query: 316 E 316
           +
Sbjct: 513 K 513



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 31/250 (12%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK--CGDLEDSIKVFSRMAPRNSVSWNSM 430
           S+   KQIHS  I +   SNP V   +I    K   GD+E +  VF  M   N   WN+M
Sbjct: 31  SMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNM 90

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  ++R G    A+ +Y EM   GV P + T+  LL   +    V  G E    + ++  
Sbjct: 91  IKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG- 149

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC--SIHGDSEMGKY 548
            S        ++ +   +G +  AR   +R   K DV+ W  ++     S   D  M  +
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDR-SSKGDVVTWNVMISGYNRSKQFDESMKLF 208

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
              +     P S     L++ + +CS           ++K++ V            K+VH
Sbjct: 209 DEMERMRVLPSS---ITLVSVLSACS-----------KLKDLNVG-----------KRVH 243

Query: 609 SFVVDDKMHP 618
            +V D K+ P
Sbjct: 244 RYVKDLKIEP 253



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 7/196 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           + + N+L+  Y  C  +  A+++F+ MP RD +SW  ++ G   NG  +     F + L+
Sbjct: 387 SFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLK 446

Query: 149 LGFYQLDQASFTIILSACDRSEL-SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
                 D+ +   +L AC  S +     K    +    G E  V     ++    + G  
Sbjct: 447 ASITP-DEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHL 505

Query: 208 SSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL---SS 263
               +V   M V+ N I W +++ G  +    EE  ++  +  L L   N   Y+   + 
Sbjct: 506 KEAHEVIKNMPVKPNSIVWGSLL-GACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNI 564

Query: 264 VMACSGLQALCEGRQI 279
             AC+  + L E R++
Sbjct: 565 YAACNRWEKLHEVRKL 580


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 319/560 (56%), Gaps = 9/560 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  YLKC  +  A K+FD++P R  V+WN+M++ ++RNG        ++R +  G  
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 153 QLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSS 209
             D+ +F+ +  A   S+L LV   +  H    + G     V VG+AL+  Y K G    
Sbjct: 174 P-DEFTFSSVFKAF--SDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRD 230

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R V  ++  ++V+ +TA+I G   +    E L++F  M    I  N  T LSSV+ C G
Sbjct: 231 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYT-LSSVLVCCG 289

Query: 270 -LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L+ L  GR IHG++ K  L+S +  +++L+ MY +CG V+D+ ++F+     + V+ T 
Sbjct: 290 NLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTS 349

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++VG  QNG EE A+  F +M+++ I  +   +S+VL        L  GKQIH++++K  
Sbjct: 350 VIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFG 409

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              + +V   LI+ Y KCG  E +  VF+ +   + VS NSMI ++A++G G +AL+L+ 
Sbjct: 410 LDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFS 469

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK  G+EP +VT+L +L AC++ GL+ +G     S      I    +HYAC+VD++GRA
Sbjct: 470 GMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRA 529

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   I ++ +  DV++W+ LL AC IHGD EM K    ++    P+    ++L++
Sbjct: 530 GRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLS 588

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ +G W +  +    M+EM + K   +SW+++E+++H+F+  D  HP    I   L 
Sbjct: 589 NLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLE 648

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL+  + + GYVP+ RF+L 
Sbjct: 649 ELIEKVKELGYVPDTRFVLQ 668



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/355 (31%), Positives = 184/355 (51%), Gaps = 12/355 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y K  +MR+A  + D +  +D V +  ++ G+  +GE       F+   + G
Sbjct: 214 VGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG 273

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++ + + +L  C   E     ++IH L+   G E  V    +L+T Y++CG     
Sbjct: 274 I-EANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            KVF +    N +TWT+VI GLVQN   E  L  F +M    I PNS T  S + ACS L
Sbjct: 333 LKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 392

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L +G+QIH I+ K  L  D  + +AL+D Y KCGS E A  +F    E+D VS+  ++
Sbjct: 393 AMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMI 452

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKS 387
             +AQNGF  EA+QLF  M   G+E  PN V+  LGV     + GL   G  I S    S
Sbjct: 453 YSYAQNGFGHEALQLFSGMKDTGLE--PNNVTW-LGVLSACNNAGLLEEGCHIFSSARNS 509

Query: 388 ---DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
              + T + +    ++++  + G L+++  + +++   + V W ++++A   HG+
Sbjct: 510 GNIELTKDHYA--CMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGD 562



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 6/328 (1%)

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
           ++GN LI +Y KCGS    RKVF E+  R+++ W ++I+  ++N   +E + ++ +M   
Sbjct: 111 SLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPD 170

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVED 310
            I P+  T+ S   A S L  + EG++ HG    L +  S++ + SAL+DMY+K G + D
Sbjct: 171 GILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRD 230

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  + +     D V  T ++VG++ +G + E++Q+F  M K GIE +   +S+VL   G 
Sbjct: 231 ARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGN 290

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
              L  G+ IH LI+K+   S       L+ MY +CG ++DS+KVF +    N V+W S+
Sbjct: 291 LEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSV 350

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I    ++G    AL  + +M    + P   T  S+L ACS + ++ +G +       V +
Sbjct: 351 IVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQI---HAIVMK 407

Query: 491 ISPRAEHY--ACVVDMVGRAGLLIEARS 516
                + Y  A ++D  G+ G    ARS
Sbjct: 408 FGLDIDKYVGAALIDFYGKCGSTEIARS 435



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 5/197 (2%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + +A     SLL+ Y +C  + +++K+F      + V+W +++ G ++NG  ++    F+
Sbjct: 309 LESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFR 368

Query: 145 RSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           + L      +   SFT+  +L AC    +    K IH +V   G + +  VG ALI  Y 
Sbjct: 369 QMLR---SSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYG 425

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCGS+   R VF  +   +V++  ++I    QN    E L+LF  M    + PN++T+L 
Sbjct: 426 KCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLG 485

Query: 263 SVMACSGLQALCEGRQI 279
            + AC+    L EG  I
Sbjct: 486 VLSACNNAGLLEEGCHI 502



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 3/164 (1%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           +I S  +K  F  +  + N LI+ Y KCG +  + KVF  +  R+ V+WNSMIA++ R+G
Sbjct: 98  KIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNG 155

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              +A+++Y+ M  +G+ P + TF S+  A S +GLV++G         +          
Sbjct: 156 RSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVG 215

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           + +VDM  + G + +AR  +    V  DV+++ AL+   S HG+
Sbjct: 216 SALVDMYAKFGKMRDAR-LVSDQVVGKDVVLFTALIVGYSHHGE 258


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 196/586 (33%), Positives = 315/586 (53%), Gaps = 19/586 (3%)

Query: 60   FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            F+LG  +H   IK        N  ++  +  + N+ L  Y K   + +A  LF  +P +D
Sbjct: 442  FYLGKQVHCVTIK--------NCMDI--SLFVANATLDMYSKYGAIGDAKALFSLIPYKD 491

Query: 120  TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            ++SWN +  G  +N E +      KR + L     D  SF+  ++AC     +   K IH
Sbjct: 492  SISWNALTVGLAQNLEEEEAVCMLKR-MRLHGITPDDVSFSTAINACSNIRATETGKQIH 550

Query: 180  CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            CL    G      VG++LI  Y K G   S RK+F ++   +++   A+I+G VQN   +
Sbjct: 551  CLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNED 610

Query: 240  EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESAL 298
            E ++LF ++    + P+S+T+ S +  CSG      G+Q+H    K   L  D  +  +L
Sbjct: 611  EAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSL 670

Query: 299  MDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
              +Y K   +EDA ++  E  +  +    T I+ G+AQNG+ + ++  F +M    +  D
Sbjct: 671  AGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSD 730

Query: 358  PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                ++VL      T+   GK+IH LI KS F S     + LI+MYSKCGD+  S + F 
Sbjct: 731  EATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFK 790

Query: 418  RMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             +  +  +  WNSMI  FA++G   +AL L+++M+   ++P +VTFL +L AC+H GL++
Sbjct: 791  ELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLIS 850

Query: 477  KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
            +G  F   M +V+ ++PR +HYAC +D++GR G L EA+  I+++P +PD +VW   L A
Sbjct: 851  EGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAA 910

Query: 537  CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
            C +H D E GK AA KL   +P   + Y+L++++++ +G W E     + M+E GV K  
Sbjct: 911  CRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFP 970

Query: 597  GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM-----IDE 637
            G SWI +  +   F+V DK HP    I+ +L +L  +M     IDE
Sbjct: 971  GCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDLTGMMKKDNDIDE 1016



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/456 (29%), Positives = 241/456 (52%), Gaps = 17/456 (3%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLELGFY 152
           +++S      ++ +A  L   MP   TV+WN ++SG  ++G EF++  G +K     G +
Sbjct: 264 TIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNV-LGLYKDMRSWGLW 322

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
              +++F  +LSA    +  +  + +H    + G +  V VG++LI  Y KCG  S  + 
Sbjct: 323 PT-RSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKN 381

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF     +N++ W A+++G VQN+L EE +++F  M    +  +  T++S + AC+ L +
Sbjct: 382 VFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSS 441

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G+Q+H +  K  +   L + +A +DMYSK G++ DA  +F      D +S   + VG
Sbjct: 442 FYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVG 501

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQN  EEEA+ +  +M   GI  D    S  +       +   GKQIH L IK    SN
Sbjct: 502 LAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSN 561

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V + LI++YSK GD+E S K+F+++   + V  N++IA F ++ N  +A++L++++  
Sbjct: 562 HAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 621

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVG-- 506
           +G++P+ VTF S+L  CS  G +N  +       +VH  + ++    +     V + G  
Sbjct: 622 DGLKPSSVTFSSILSGCS--GSLNSAIG-----KQVHCYTLKSGVLYDDTLLGVSLAGIY 674

Query: 507 -RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            ++ +L +A   +  MP   ++  W A++   + +G
Sbjct: 675 LKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNG 710



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/431 (26%), Positives = 209/431 (48%), Gaps = 46/431 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  ++ G    G  +H   +K+             ++     +L+  Y KC  + NA 
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKS----------GFSSSVFCEAALVDMYAKCGDVPNAR 213

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++FD +   DT+ W++M++ + R G +      F R  ++G             SA D+ 
Sbjct: 214 RVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMG-------------SAPDQV 260

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            L                   VT+ + L +S    G       +  +M   + + W AVI
Sbjct: 261 TL-------------------VTIISTLASS----GRLDHATALLKKMPTPSTVAWNAVI 297

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG  Q+ L    L L+  M    + P   T+ S + A + ++A  EG+Q+H       L 
Sbjct: 298 SGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLD 357

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           +++ + S+L+++Y+KCG   DA  +F+ + E + V    +L GF QN   EEA+++F  M
Sbjct: 358 ANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYM 417

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++  ++ D     ++LG     +S  LGKQ+H + IK+    + FV N  ++MYSK G +
Sbjct: 418 MRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAI 477

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            D+  +FS +  ++S+SWN++    A++    +A+ + + M+L G+ P DV+F + ++AC
Sbjct: 478 GDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINAC 537

Query: 470 SHVGLVNKGME 480
           S++     G +
Sbjct: 538 SNIRATETGKQ 548



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 194/445 (43%), Gaps = 45/445 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  Y K  ++  A         R + + ++++S   R+G      G F+        
Sbjct: 95  DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 154

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + DQ    ++LSAC R  +    + +HC V   G+   V    AL+  Y KCG   + R+
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +   + I W+++I+   +   Y+E L LF +M      P+ +T ++          
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVT---------- 264

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
                    I+  LA    L   +AL+       +V  AW                ++ G
Sbjct: 265 ---------IISTLASSGRLDHATALLKKMPTPSTV--AWN--------------AVISG 299

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            AQ+G E   + L+  M   G+    +  +++L       +   G+Q+H+  +     +N
Sbjct: 300 HAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDAN 359

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV + LIN+Y+KCG   D+  VF     +N V WN+M+  F ++    +A+ +++ M  
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMR 419

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++  + TF+S+L AC+++     G +     +K+  ++      A      +DM  + 
Sbjct: 420 YTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANA-----TLDMYSKY 474

Query: 509 GLLIEARSFIERMPVKPDVLVWQAL 533
           G + +A++    +P K D + W AL
Sbjct: 475 GAIGDAKALFSLIPYK-DSISWNAL 498



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 134/280 (47%), Gaps = 37/280 (13%)

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+       + ACS +  L  GRQ+H  + K    S +  E+AL+DMY+KCG V +A ++
Sbjct: 156 PDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRV 215

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+     D +  + ++  + + G  +EA+ LF +M K G    P+ V+ V          
Sbjct: 216 FDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA--PDQVTLVT--------- 264

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
                                   +I+  +  G L+ +  +  +M   ++V+WN++I+  
Sbjct: 265 ------------------------IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGH 300

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+ G  F  L LY++M+  G+ PT  TF S+L A +++    +G + + +   +H +   
Sbjct: 301 AQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQ-MHAAAVMHGLDAN 359

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
               + ++++  + G   +A++  + +  + ++++W A+L
Sbjct: 360 VFVGSSLINLYAKCGCPSDAKNVFD-LSCEKNIVMWNAML 398


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 177/525 (33%), Positives = 290/525 (55%), Gaps = 1/525 (0%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNTM+ G +    FD     +  S+  G +  +  +   +L AC R     +   IH L+
Sbjct: 82  WNTMIRGLVSKDCFDDAIHLYG-SMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLL 140

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              GY+ +V V  +L++ Y KC +     KVF ++  +NV++WTA+I+G + +  + E +
Sbjct: 141 VKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAI 200

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
             F K+    + P+S + +  + AC+ L     G  I   +    +  ++ + ++L+DMY
Sbjct: 201 GAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMY 260

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG++E A  IF    E D VS + ++ G+A NG  ++A+ LF +M    ++ D   + 
Sbjct: 261 VKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMV 320

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
            VL       +L LG    SL+ +++F SNP +   LI+MYSKCG +  + ++F+ M  +
Sbjct: 321 GVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRK 380

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V WN+M+   + +G+      L+  ++  G+ P + TF+ LL  C+H G VN+G +F 
Sbjct: 381 DRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFF 440

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +M  V  ++P  EHY C+VD++GRAGLL EA   I  MP+KP+ +VW ALLG C +H D
Sbjct: 441 NNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKD 500

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           + + +   +KL   +P +   Y+ ++NIYS + RW+E  K    MKE  + K    SWIE
Sbjct: 501 THLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIE 560

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           I+  VH F+V DK H  ++ I+  L EL R +   G+VP   F+L
Sbjct: 561 IDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 213/435 (48%), Gaps = 16/435 (3%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N   I  +L   A++    LG  +H+  +K     D            +  SLLS Y+
Sbjct: 111 LPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD----------VFVKTSLLSLYV 160

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KCD   +A+K+FDD+P ++ VSW  +++G++ +G F    G FK+ LE+G  + D  S  
Sbjct: 161 KCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGL-KPDSFSLV 219

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            +L+AC R       + I   +   G    V V  +L+  Y KCG+      +F  M  +
Sbjct: 220 KVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEK 279

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           ++++W+ +I G   N L ++ L LF +M    + P+  T +  + AC+ L AL  G    
Sbjct: 280 DIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWAS 339

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            ++ +    S+  + +AL+DMYSKCGSV  AW+IF   +  D V    ++VG + NG  +
Sbjct: 340 SLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAK 399

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--G 398
               LF  + K GI  D N    +L        +  G+Q  +  +K  F+  P + +   
Sbjct: 400 AVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFN-NMKRVFSLTPSIEHYGC 458

Query: 399 LINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVE 456
           ++++  + G L ++ ++ + M  + N+V W +++     H +   A ++ +++ +LE   
Sbjct: 459 MVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWN 518

Query: 457 PTDVTFLSLLHACSH 471
             +   LS +++ +H
Sbjct: 519 SGNYVQLSNIYSGNH 533



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 191/369 (51%), Gaps = 2/369 (0%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  +     +++  + N ++      GS++  + VF +++  N+  W  +I GLV  
Sbjct: 33  KHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSK 92

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             +++ + L+  M  G   PN+ T    + AC+    +  G +IH +L K     D+ ++
Sbjct: 93  DCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVK 152

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+ +Y KC + +DA ++F+   + + VS T I+ G+  +G   EA+  F K+++ G++
Sbjct: 153 TSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLK 212

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  VL           G+ I   I  S    N FV   L++MY KCG+LE +  +
Sbjct: 213 PDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLI 272

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           FS M  ++ VSW++MI  +A +G   +AL+L+ +M+ E ++P   T + +L AC+ +G +
Sbjct: 273 FSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGAL 332

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           + G+ +  S+ + +           ++DM  + G + +A      M  K D +VW A++ 
Sbjct: 333 DLGI-WASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRK-DRVVWNAMMV 390

Query: 536 ACSIHGDSE 544
             S++G ++
Sbjct: 391 GLSMNGHAK 399



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 143/309 (46%), Gaps = 7/309 (2%)

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +GL    + + IH  L +L L  D  + + ++      GS   +  +F   +E +     
Sbjct: 24  NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWN 83

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G       ++A+ L+  M   G   +   +  VL        + LG +IHSL++K+
Sbjct: 84  TMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA 143

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            +  + FV   L+++Y KC + +D++KVF  +  +N VSW ++I  +   G+  +A+  +
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           +++   G++P   + + +L AC+ +G    G E++        +         ++DM  +
Sbjct: 204 KKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YI 565
            G L  A      MP K D++ W  ++   + +G   + + A +  F  Q ++  P  Y 
Sbjct: 263 CGNLERANLIFSAMPEK-DIVSWSTMIQGYAFNG---LPQQALDLFFQMQSENLKPDCYT 318

Query: 566 LMANIYSCS 574
           ++  + +C+
Sbjct: 319 MVGVLSACA 327


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 185/597 (30%), Positives = 320/597 (53%), Gaps = 50/597 (8%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR--------------------NAVKL 111
           + F+  + +NVY       +WN ++S Y K    +                    +A +L
Sbjct: 155 RVFDTMEKKNVY-------LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFEL 207

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +  RD +SWN+M+SG++ NG  + G G +K+ + LG   +D A+   +L  C  S  
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGT 266

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             + K +H L     +E  +   N L+  Y KCG      +VF +M  RNV++WT++I+G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             ++   +  +KL  +M    +  + +   S + AC+   +L  G+ +H  +    ++S+
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESN 386

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + +ALMDMY+KCGS+E A  +F      D +S   ++                     
Sbjct: 387 LFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------------------- 425

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ D   ++ VL      ++L  GK+IH  I+++ ++S+  V N L+++Y KCG L  
Sbjct: 426 GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MIA +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+ +G  F   M     I P+ EHYAC+VD++ R G L +A  FIE +P+ PD  +W 
Sbjct: 546 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWG 605

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
           ALL  C  + D E+ +  AE++F  +P++   Y+L+ANIY+ + +W+E  +  +++ + G
Sbjct: 606 ALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQG 665

Query: 592 VDKETGISWIEIEKQVHSFVV-DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + K  G SWIEI+ +V+ FV  ++  HP +  I  +L ++ R M +EG+ P  ++ L
Sbjct: 666 LRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYAL 722



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 199/441 (45%), Gaps = 76/441 (17%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +L+  +++ +L  C   +     K +H ++       +  +G  L++ Y  CG    GR+
Sbjct: 96  ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 213 VFGEMRVRN--------------------------------------------------- 221
           VF  M  +N                                                   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+W ++ISG V N L E GL ++ +M    I+ +  T +S ++ C+    L  G+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K + +  +   + L+DMYSKCG ++ A ++FE   E + VS T ++ G+ ++G  + 
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A++L  +M K G+++D   ++++L       SL  GK +H  I  ++  SN FV N L++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E +  VFS M  ++ +SWN+MI                       ++P   T
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRT 434

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIER 520
              +L AC+ +  + +G E    +      S R  H A  +VD+  + G+L  AR   + 
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDM 492

Query: 521 MPVKPDVLVWQALLGACSIHG 541
           +P K D++ W  ++    +HG
Sbjct: 493 IPSK-DLVSWTVMIAGYGMHG 512



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 55/266 (20%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++ F Q G  E AM+L     K+  E++    S+VL +     S   GK++HS+I  +  
Sbjct: 73  ILHFCQLGDLENAMELICMCKKS--ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSV 130

Query: 390 TSNPFVNNGLINMYSKCGDL---------------------------------------- 409
             +  +   L++ Y+ CGDL                                        
Sbjct: 131 GVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI 190

Query: 410 -----------EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
                      E + ++F ++  R+ +SWNSMI+ +  +G   + L +Y++M   G++  
Sbjct: 191 MVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVD 250

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             T +S+L  C++ G ++ G + + S+        R      ++DM  + G L  A    
Sbjct: 251 LATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           E+M  + +V+ W +++   +  G S+
Sbjct: 310 EKMGER-NVVSWTSMIAGYTRDGRSD 334


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 171/494 (34%), Positives = 292/494 (59%), Gaps = 5/494 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D A+++ ++  C          +I   +Y  G++  + + N LI  Y K    +   ++F
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNVI+WT +IS   + +++++ L+L V M    + PN  TY S + AC+G+  + 
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV- 130

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             R +H  + K  L+SD+ + SAL+D+++K G  EDA  +F+     D +    I+ GFA
Sbjct: 131 --RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 188

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN   + A++LF +M +AG   +   +++VL        L LG Q H  I+K D   +  
Sbjct: 189 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLI 246

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN L++MY KCG LED+ +VF++M  R+ ++W++MI+  A++G   +AL+L+E MK  G
Sbjct: 247 LNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSG 306

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
            +P  +T + +L ACSH GL+  G  + +SM +++ I+P  EHY C++D++G+AG L +A
Sbjct: 307 TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDA 366

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              +  M  +PD + W+ LLGAC +  +  + +YAA+K+    P+    Y +++NIY+ S
Sbjct: 367 VKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANS 426

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            +W    +  KRM+++G+ KE G SWIE+ KQ+H+F++ D+ HPQ   ++  L +L+  +
Sbjct: 427 QKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRL 486

Query: 635 IDEGYVPNKRFILH 648
           I  GYVP   F+L 
Sbjct: 487 IGIGYVPETNFVLQ 500



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 203/393 (51%), Gaps = 31/393 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+K + + +A +LFD MP R+ +SW TM+S + +           +++LEL   
Sbjct: 52  NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-------CKIHQKALELLVL 104

Query: 153 QLDQA------SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            L         +++ +L AC+   +S V +M+HC +   G E +V V +ALI  + K G 
Sbjct: 105 MLRDGVRPNVYTYSSVLRACN--GMSDV-RMLHCGIIKEGLESDVYVRSALIDVFAKLGE 161

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF EM   + I W ++I G  QN   +  L+LF +M          T  S + A
Sbjct: 162 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 221

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL  L  G Q H  + K     DL + +AL+DMY KCGS+EDA ++F   +E D ++ 
Sbjct: 222 CTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITW 279

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLI 384
           + ++ G AQNG+ +EA++LF  M  +G +  PN ++ ++GV    +  GL +    +   
Sbjct: 280 STMISGLAQNGYSQEALKLFELMKSSGTK--PNYIT-IVGVLFACSHAGLLEDGWYYFRS 336

Query: 385 IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGF 441
           +K  +  NP   +   +I++  K G L+D++K+ + M    ++V+W +++ A     N  
Sbjct: 337 MKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN-- 394

Query: 442 KALELYEEMKLEGVEPTDV---TFLSLLHACSH 471
             L  Y   K+  ++P D    T LS ++A S 
Sbjct: 395 MVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQ 427



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           ++ N+L+  Y KC  + +A ++F+ M  RD ++W+TM+SG  +NG        F+
Sbjct: 246 ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 311/579 (53%), Gaps = 26/579 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  +H   IK     D   VY       + N L+  YLK   +  A K+FD+MP+RD V
Sbjct: 142 VGQKVHGKLIKIGFDLD---VY-------VCNFLIDMYLKIGFIELAEKVFDEMPVRDLV 191

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWN+MVSG+  +G+       FK  L LG  + D+      L AC           IHC 
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLG-NKADRFGMISALGACSIEHCLRSGMEIHCQ 250

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V     E ++ V  +LI  Y KCG      +VF  +  +N++ W A+I G+ ++      
Sbjct: 251 VIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDK---- 306

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
                      + P+ +T ++ + +CS   AL EG+ IHG   +      L +E+AL+DM
Sbjct: 307 -----------VIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDM 355

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y KCG ++ A  +F    E + VS   ++  + QN   +EA+++F  ++   ++ D   +
Sbjct: 356 YGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITI 415

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           ++VL       S   GKQIHS I+K    SN F++N ++ MY+KCGDL+ + + F  M  
Sbjct: 416 ASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC 475

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ VSWN+MI A+A HG G  +++ + EM+ +G +P   TF+SLL ACS  GL+++G  F
Sbjct: 476 KDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGF 535

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             SM   + I P  EHY C++D++GR G L EA+ FIE MP+ P   +W +LL A   H 
Sbjct: 536 FNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHN 595

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D  + + AA  +   + D+   Y+L++N+Y+ +GRW++  +    MKE G+ K  G S +
Sbjct: 596 DVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMV 655

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           +I  +  SF+  D+ H   + I+ VL  LL+ + ++ Y+
Sbjct: 656 DINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYL 694



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 240/491 (48%), Gaps = 29/491 (5%)

Query: 56  KEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDM 115
           K   F    +  + FIK  +   +      PN   I   L  F ++   M NA+ +F+ M
Sbjct: 26  KAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLCGF-VESGLMGNALDMFEKM 84

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
              DT  WN ++ G+  NG F     F+ R +E    + D  +F  ++ AC      +V 
Sbjct: 85  NHSDTFIWNVIIRGYTNNGLFQEAIDFYYR-MECEGIRSDNFTFPFVIKACGELLALMVG 143

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + +H  +   G++ +V V N LI  Y K G      KVF EM VR++++W +++SG    
Sbjct: 144 QKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGY--- 200

Query: 236 QLYEEGLK--LFVKMHLGLIN-PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
           Q+  +GL   +  K  L L N  +    +S++ ACS    L  G +IH  + +  L+ D+
Sbjct: 201 QIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDI 260

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            ++++L+DMY KCG V+ A ++F      + V+   ++ G  ++                
Sbjct: 261 MVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDD--------------- 305

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             ++ P++++ +  +     S  L  GK IH   I+  F     +   L++MY KCG+L+
Sbjct: 306 --KVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELK 363

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  VF++M  +N VSWN+M+AA+ ++    +AL++++ +  E ++P  +T  S+L A +
Sbjct: 364 LAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVA 423

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
            +   ++G +    + ++   S      A +V M  + G L  AR F + M  K DV+ W
Sbjct: 424 ELASRSEGKQIHSYIMKLGLGSNTFISNA-IVYMYAKCGDLQTAREFFDGMVCK-DVVSW 481

Query: 531 QALLGACSIHG 541
             ++ A +IHG
Sbjct: 482 NTMIMAYAIHG 492


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 310/583 (53%), Gaps = 39/583 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+L  Y+K   + +A++LFD MP RD VSWN MVS   ++G               G  
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV- 266

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  ++T  L+AC R       K +H  V       +  V +AL+  Y KCG     + 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  RN + WT +I+G +Q+  + E ++LF +M   L+  +     + +  C     
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMD 386

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT----- 327
           LC GRQ+H +  K      + + ++L+ MY+KC +++ A  IF F  E D VS T     
Sbjct: 387 LCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITA 446

Query: 328 --------------------------VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
                                      +L  + Q+G EE+ ++++  M+    ++ P+ V
Sbjct: 447 HSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK-DVRPDWV 505

Query: 362 SAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + V  +F     LG   LG QI    +K     +  V N +I MYSKCG + ++ KVF  
Sbjct: 506 TYVT-LFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDF 564

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  ++ VSWN+MI  +++HG G +A+E+++++   G +P  ++++++L  CSH GLV +G
Sbjct: 565 LNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +   M  VH ISP  EH++C+VD++GRAG L EA+  I+ MP+KP   VW ALL AC 
Sbjct: 625 KSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACK 684

Query: 539 IHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
           IHG++E+ + AA+ +F L  PDS   Y+LMA IY+ +G+  + A+  K M++ G+ K  G
Sbjct: 685 IHGNNELAELAAKHVFELDSPDS-GSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPG 743

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            SW+E+  +VH F  DD  HPQ   I   L EL+  +   GYV
Sbjct: 744 YSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYV 786



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 143/530 (26%), Positives = 251/530 (47%), Gaps = 71/530 (13%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  +  N +L+ Y+K  ++ +AV+LF  MP RD  SWNT++SG+ ++ ++      F  
Sbjct: 69  PN-VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVS 127

Query: 146 SLELGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               G    +  +F   + +C    E SL  +++  +V   G +++  V  AL+  + +C
Sbjct: 128 MHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG-MVQKFGSQDDSDVAAALVDMFVRC 186

Query: 205 GSSSSGRKVF-------------------------------GEMRVRNVITWTAVISGLV 233
           G+     ++F                                 M  R+V++W  ++S L 
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           Q+    E L + V M    +  +S TY SS+ AC+ L +L  G+Q+H  + +     D  
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPY 306

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + SAL+++Y+KCG  ++A  +F    + + V+ TV++ GF Q+G   E+++LF +M    
Sbjct: 307 VASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAEL 366

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           + +D   ++ ++        L LG+Q+HSL +KS       V+N LI+MY+KC +L+ + 
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG------------------- 454
            +F  M  ++ VSW SMI A ++ GN  KA E ++ M  +                    
Sbjct: 427 SIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEED 486

Query: 455 -------------VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
                        V P  VT+++L   C+ +G    G + +    +V  I   +   A V
Sbjct: 487 GLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANA-V 545

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           + M  + G ++EAR   + + VK D++ W A++   S HG   MGK A E
Sbjct: 546 ITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQHG---MGKQAIE 591



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 122/255 (47%), Gaps = 7/255 (2%)

Query: 69  SFIKTFEPFDN----QNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           S I  +   DN    ++++   N    V W S+++ + +   +  A + FD M  ++ ++
Sbjct: 411 SLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVIT 470

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN M+  ++++G  + G   +   L     + D  ++  +   C     + +   I    
Sbjct: 471 WNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRT 530

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G   + +V NA+IT Y KCG     RKVF  + V+++++W A+I+G  Q+ + ++ +
Sbjct: 531 VKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAI 590

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-ALQSDLCIESALMDM 301
           ++F  +      P+ ++Y++ +  CS    + EG+    ++ ++  +   L   S ++D+
Sbjct: 591 EIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDL 650

Query: 302 YSKCGSVEDAWQIFE 316
             + G + +A  + +
Sbjct: 651 LGRAGHLTEAKDLID 665



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 12/233 (5%)

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N   +N ++N Y K G L D++++F RM  R+  SWN++++ + +      +LE +  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 452 LEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             G   P   TF   + +C  +G  +  ++ L  M +       ++  A +VDM  R G 
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLL-GMVQKFGSQDDSDVAAALVDMFVRCGT 188

Query: 511 LIEARSFIERMPVKPDVLVWQALL-GACSIHGDSEMGKYAAEKLFLAQPDSP-APYILMA 568
           +  A     R+  +P +    ++L G    +G        A +LF + P+     + +M 
Sbjct: 189 VDLASRLFVRIK-EPTIFCRNSMLVGYVKTYGVDH-----ALELFDSMPERDVVSWNMMV 242

Query: 569 NIYSCSGRWKERAKAIKRMKEMGV--DKETGISWIEIEKQVHSFVVDDKMHPQ 619
           +  S SGR +E    +  M+  GV  D  T  S +    ++ S     ++H Q
Sbjct: 243 SALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ 295



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 129/329 (39%), Gaps = 72/329 (21%)

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGS-------------------------------- 307
           HG L  + L S + +++ L+  Y  CG+                                
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           + DA ++F      D  S   ++ G+ Q+     +++ FV M ++G +  PN  +    +
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSG-DSSPNAFTFAYAM 145

Query: 368 --FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR------- 418
              G      L  Q+  ++ K     +  V   L++M+ +CG ++ + ++F R       
Sbjct: 146 KSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIF 205

Query: 419 ------------------------MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
                                   M  R+ VSWN M++A ++ G   +AL++  +M+ +G
Sbjct: 206 CRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLI 512
           V     T+ S L AC+ +  +  G +      +V R  P  + Y  + +V++  + G   
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQL---HAQVIRNLPCIDPYVASALVELYAKCGCFK 322

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
           EA+     +  + +V  W  L+     HG
Sbjct: 323 EAKGVFNSLHDRNNV-AWTVLIAGFLQHG 350


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 184/597 (30%), Positives = 320/597 (53%), Gaps = 50/597 (8%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV--------------------KL 111
           + F+  + +NVY       +WN ++S Y K    + ++                    +L
Sbjct: 17  RVFDTMEKKNVY-------LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASEL 69

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +  RD +SWN+M+SG++ NG  + G G +K+ + LG   +D A+   +L  C +S  
Sbjct: 70  FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCAKSGT 128

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             + K +H L     +E  +   N L+  Y KCG      +VF +M  RNV++WT++I+G
Sbjct: 129 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 188

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             ++   +  + L  +M    +  + +   S + AC+   +L  G+ +H  +    + S+
Sbjct: 189 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASN 248

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + +ALMDMY+KCGS+E A  +F      D +S   ++                     
Sbjct: 249 LFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------------------- 287

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ D   ++ +L      ++L  GK+IH  I+++ ++S+  V N L+++Y KCG L  
Sbjct: 288 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 347

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MIA +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 348 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 407

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+ +G  F   M     I P+ EHYAC+VD++ R G L +A  FIE +P+ PD  +W 
Sbjct: 408 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWG 467

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
           ALL  C I+ D E+ +  AE++F  +P++   Y+L+ANIY+ + +W+E  +  +++ + G
Sbjct: 468 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 527

Query: 592 VDKETGISWIEIEKQVHSFVV-DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + K  G SWIEI+ +V+ FV  ++  HP +  I  +L ++ R M +EGY P  ++ L
Sbjct: 528 LRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 584



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 196/432 (45%), Gaps = 81/432 (18%)

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRN----------------------------------- 221
           L++ Y  CG    GR+VF  M  +N                                   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 222 ----------------VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                           VI+W ++ISG V N L E GL ++ +M    I+ +  T +S ++
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C+    L  G+ +H +  K + +  +   + L+DMYSKCG ++ A ++FE   E + VS
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVS 181

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T ++ G+ ++G+ + A+ L  +M K G+++D   ++++L       SL  GK +H  I 
Sbjct: 182 WTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
            ++  SN FV N L++MY+KCG +E +  VFS M  ++ +SWN+M+              
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE------------ 289

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDM 504
                    ++P   T   +L AC+ +  + +G E    +      S R  H A  +VD+
Sbjct: 290 ---------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDL 338

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQPDSPA 562
             + G+L  AR   + +P K D++ W  ++    +H  G+  +  +   +    +PD  +
Sbjct: 339 YVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVS 397

Query: 563 PYILMANIYSCS 574
               ++ +Y+CS
Sbjct: 398 ---FISILYACS 406


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/632 (31%), Positives = 321/632 (50%), Gaps = 73/632 (11%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           V   SL++ +    ++R+A   FD +P   RDTV  N M+S F R          F   L
Sbjct: 95  VAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALL 154

Query: 148 ELGFYQLDQASFTIILSACDRSE--LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
             G  + D  SFT ++SA  +     +     +HC V   G    ++V NALI  Y KC 
Sbjct: 155 GSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCD 214

Query: 206 SSSS---GRKVFGEMRVRNVITWT-------------------------------AVISG 231
           +  +    RKV  EM  ++ +TWT                               A+ISG
Sbjct: 215 TPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISG 274

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL----A 287
            VQ+ +  +  +LF +M    +  +  T+ S + AC+       G+ +HG + +L     
Sbjct: 275 YVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFV 334

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF-------------- 333
            ++ L + +AL+ +YSK G +  A +IF+     D VS   IL G+              
Sbjct: 335 PEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFK 394

Query: 334 -----------------AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
                               G  E+A++LF +M    ++      +  +   G   +L  
Sbjct: 395 VMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKH 454

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+Q+H+ +++  F ++    N L+ MY+KCG + D+  VF  M   +SVSWN+MI+A  +
Sbjct: 455 GRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQ 514

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           HG+G +ALEL+++M  EG++P  ++FL++L AC+H GLV++G  + +SM     ISP  +
Sbjct: 515 HGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 574

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HYA ++D++GR+G + EAR  I+ MP +P   +W+A+L  C  +GD E G YAA++LF  
Sbjct: 575 HYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRM 634

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            P     YIL++N YS +GRW + A+  K M++ GV KE G SWIE+  ++H F+V D  
Sbjct: 635 IPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTK 694

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           HP+A  ++  L  +   M   GYVP+ +F+LH
Sbjct: 695 HPEAQEVYQFLEVIGARMRKLGYVPDTKFVLH 726



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 35/270 (12%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TFEP---------------- 76
           + K+ LD +   + +LS  A  G F  G S+H   I+    F P                
Sbjct: 293 SEKVPLDEFT-FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK 351

Query: 77  ----------FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM 126
                     FD  N+ +V    V WN++LS Y+    +  AV++F  MP ++ +SW  M
Sbjct: 352 GGKIVIAKRIFDTMNLKDV----VSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 407

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
           VSG++  G  +     F +         D  ++   ++AC         + +H  +  CG
Sbjct: 408 VSGYVHGGLSEDALKLFNQMRAEDVKPCDY-TYAGAIAACGELGALKHGRQLHAHLVQCG 466

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           +E   + GNAL+T Y KCG+ +  R VF  M   + ++W A+IS L Q+    E L+LF 
Sbjct: 467 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 526

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +M    I+P+ +++L+ + AC+    + EG
Sbjct: 527 QMVAEGIDPDRISFLTILTACNHAGLVDEG 556


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 186/579 (32%), Positives = 318/579 (54%), Gaps = 12/579 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +H   IK+    D   +Y       I NSL+  Y K   + +A  +F +MP+RD VS
Sbjct: 145 GERVHGKVIKSGLDLD---IY-------IGNSLIIMYAKIGCIESAEMVFREMPVRDLVS 194

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN+M+SG++  G+       F R ++    +LD+ S   IL AC         K IHC +
Sbjct: 195 WNSMISGYVSVGDGWRSLSCF-REMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQM 253

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                E +V V  +L+  Y KCG      ++F ++  ++++ W A+I G   N    E  
Sbjct: 254 MRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESF 313

Query: 243 KLFVKMHLG-LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
               KM  G  ++P+ +T ++ +  C+ L+A+  G+ +HG   +      L +E+AL+DM
Sbjct: 314 AYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDM 373

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y +CG ++ A  +F    E + +S   ++  + +NG   +AM LF  +    ++ D   +
Sbjct: 374 YGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTI 433

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +++L  +    SL   +QIH  + K    SN FV+N ++ MY KCG+L  + ++F RM  
Sbjct: 434 ASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTF 493

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           ++ +SWN++I A+A HG G  ++EL+ EM+ +G EP   TF+SLL +CS  GLVN+G E+
Sbjct: 494 KDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEY 553

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             SM   + I+P  EHY C++D++GR G L  A++FIE MP+ P   +W +LL A    G
Sbjct: 554 FNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKG 613

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D E+ + AAE +   + D+   Y+L++N+Y+ +GRW++  +    MK+ G++K  G S +
Sbjct: 614 DVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVV 673

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           ++  +   FV  D+   + + ++ VL  + + + ++ YV
Sbjct: 674 DLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYV 712



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/478 (28%), Positives = 251/478 (52%), Gaps = 7/478 (1%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           L     KT     NQ+ + V   +V     LS Y++   M+NA+ LF++M   DT  WN 
Sbjct: 38  LKPRIFKTARSKRNQS-FLVERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNV 96

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M+ GF+ NG F     F+ R +E G  + D  ++  ++ AC         + +H  V   
Sbjct: 97  MIRGFVDNGLFWDAVDFYHR-MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKS 155

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G + ++ +GN+LI  Y K G   S   VF EM VR++++W ++ISG V        L  F
Sbjct: 156 GLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCF 215

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M    I  +  + +  + ACS    L  G++IH  + +  L+ D+ ++++L+DMY+KC
Sbjct: 216 REMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKC 275

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV- 364
           G ++ A ++F+   +   V+   ++ G++ N    E+   +V+ ++ G ++ P+ ++ + 
Sbjct: 276 GRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFA-YVRKMQEGGKLHPDWITMIN 334

Query: 365 -LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            L       ++ LGK +H   I++ F  +  +   L++MY +CG L+ +  +F +M  RN
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERN 394

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            +SWN+MIA++ ++G   KA+ L++++  + ++P   T  S+L A + +  + +  +   
Sbjct: 395 LISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHG 454

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +T++ ++         +V M G+ G L+ AR   +RM  K DV+ W  ++ A +IHG
Sbjct: 455 YVTKL-KLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIHG 510



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 176/348 (50%), Gaps = 3/348 (0%)

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           ++SY + G   +   +F  MR  +   W  +I G V N L+ + +  + +M  G +  ++
Sbjct: 67  LSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDN 126

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
            TY   + AC GL  L EG ++HG + K  L  D+ I ++L+ MY+K G +E A  +F  
Sbjct: 127 FTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFRE 186

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
               D VS   ++ G+   G    ++  F +M  +GI++D   V  +LG   ++  L  G
Sbjct: 187 MPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNG 246

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K+IH  +++S    +  V   L++MY+KCG ++ + ++F ++  ++ V+WN+MI  ++ +
Sbjct: 247 KEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLN 306

Query: 438 GNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
              F++     +M+  G + P  +T ++LL  C+ +  +  G   +      +   P   
Sbjct: 307 AQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKS-VHGFAIRNGFLPHLV 365

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               +VDM G  G L  A     +M  + +++ W A++ + + +G++ 
Sbjct: 366 LETALVDMYGECGKLKPAECLFGQMNER-NLISWNAMIASYTKNGENR 412



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 196/408 (48%), Gaps = 17/408 (4%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
            S + LD +  I  +L   + EG    G  +H   +++    D           ++  SL
Sbjct: 220 ASGIKLDRFSVIG-ILGACSLEGFLRNGKEIHCQMMRSRLELD----------VMVQTSL 268

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           +  Y KC +M  A +LFD +  +  V+WN M+ G+  N +    F + ++  E G    D
Sbjct: 269 VDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPD 328

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             +   +L  C + E  L+ K +H      G+   + +  AL+  Y +CG       +FG
Sbjct: 329 WITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFG 388

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           +M  RN+I+W A+I+   +N    + + LF  +    + P++ T  S + A + L +L E
Sbjct: 389 QMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLRE 448

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
             QIHG + KL L S+  + ++++ MY KCG++  A +IF+     D +S   +++ +A 
Sbjct: 449 AEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAI 508

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +GF   +++LF +M + G E + +   ++L    V   +  G +  +  +K D+  NP +
Sbjct: 509 HGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFN-SMKRDYNINPGI 567

Query: 396 NN--GLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGN 439
            +   ++++  + G+L+ +      M  AP   + W S++ A    G+
Sbjct: 568 EHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARI-WGSLLTASRNKGD 614


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 308/585 (52%), Gaps = 15/585 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S LL   +K      G SLHA+ +KT    D            + N +L+ Y KC    
Sbjct: 6   LSSLLHHCSKTKALRCGLSLHAAVLKTGTQSD----------VFMSNHVLNMYAKCGHTT 55

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD+M  ++ VSW+ M+SG+ + GE  M    + +     F   ++  F  ++SAC
Sbjct: 56  FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM----FLVPNEYVFASVISAC 111

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  + + IH      GYE    V N+LI+ Y KC   S    VF      N +++ 
Sbjct: 112 ASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYN 171

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+I+G V+NQ  E GL+ F  M    + P+   ++  +  C+  + L  G ++H    KL
Sbjct: 172 ALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKL 231

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L S   I + ++ MYS+   +++A + F   EE D +S   ++   +      + +++F
Sbjct: 232 NLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVF 291

Query: 347 VKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
             M +   +  D    ++ L       S+  GKQIH+ ++++    +  V N L+NMY+K
Sbjct: 292 KHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAK 351

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +  +  +FS+M   N VSWN++IA F  HG G +A+EL+E+M   G+ P  VTF+ L
Sbjct: 352 CGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGL 411

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+H GLV+KG  +  SM E + I+P  EH++C++DM+GRAG L EA  ++ + P   
Sbjct: 412 LTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWN 471

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           D +V  +LL A  +HGD  +G+  A+ L   QP + +PY+L++N+Y+  G W   A+A K
Sbjct: 472 DPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARK 531

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           R+K  G+ KE G S IE+   V  F + D  H +   I G+L  L
Sbjct: 532 RLKGSGLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKEIKGILKTL 576


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 199/624 (31%), Positives = 332/624 (53%), Gaps = 26/624 (4%)

Query: 50  LLSISAKEGHFH-----LGPSLHASFIK----TFEPF--------DNQNVY------NVP 86
           ++S  A+ GHFH         L  SF++    TF P         D + V+         
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFE 171

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
               I  S + FY +   +  A  LFD+M +RD  +WN M+SGF  NG+       F   
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE- 230

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +      +D  + + +L  C + +  +   +IH      G E ++ V NALI  Y K G 
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             S   +F +M+VR++++W ++++   QN+     L ++ KMH   + P+ LT +S    
Sbjct: 291 LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASV 350

Query: 267 CSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            + L      R IHG + +      D+ + +A++DMY+K G ++ A ++FE     D +S
Sbjct: 351 AAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS 410

Query: 326 MTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
              ++ G++QNG   EA+ ++  M   +G   +     ++L       +L  G + H  +
Sbjct: 411 WNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQL 470

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK+    + FV+  L++MY KCG L D++ +F  +  ++SVSWN++I+    HG G KA+
Sbjct: 471 IKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAV 530

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L++EM+ EGV+P  +TF+SLL ACSH GLV++G    + M E + I P  +HY C+VD+
Sbjct: 531 KLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDL 590

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
            GRAG L +A +F++ MPV+PDV VW ALLGAC IH + E+ +  ++ L   + ++   Y
Sbjct: 591 FGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYY 650

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+  G W+   +     ++ G+ K  G S IE++K++  F   ++ HP+ + I+
Sbjct: 651 VLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIY 710

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L  L   M   GYVP+  F+L 
Sbjct: 711 SELRNLTAKMKSIGYVPDYNFVLQ 734



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 241/506 (47%), Gaps = 34/506 (6%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           +D +R+     K    HL   LHA  +          V     +  +   L++ Y     
Sbjct: 44  IDFNRIFLYCTK---VHLAKQLHALLV----------VSGKTQSIFLSAKLINRYAFLGD 90

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +A   FD +  +D  +WN+M+S + R G F      F   L   F Q D  +F  ++ 
Sbjct: 91  IPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIR 150

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC   +     + +HCLV   G+E +V +  + I  Y + G  S    +F  M +R++ T
Sbjct: 151 ACGNLD---DGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGT 207

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W A+ISG   N    E L++F +M    ++ +S+T  S +  C  L  +  G  IH    
Sbjct: 208 WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAI 267

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           KL L+ DL + +AL++MY+K G +  A  IF   +  D VS   +L  F QN     A+ 
Sbjct: 268 KLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALG 327

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKSD-FTSNPFVNNGLI 400
           ++ KM   G+   P++++ V  +  V   LG     + IH  + +   F  +  + N +I
Sbjct: 328 VYNKMHSIGVV--PDLLTLV-SLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAII 384

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTD 459
           +MY+K G ++ + KVF  +  ++ +SWNS+I  ++++G   +A+++Y  M+   G  P  
Sbjct: 385 DMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQ 444

Query: 460 VTFLSLLHACSHVGLVNKGM----EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
            T++S+L A S +G + +GM    + +K+               C+VDM G+ G L +A 
Sbjct: 445 GTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS-----TCLVDMYGKCGKLADAL 499

Query: 516 SFIERMPVKPDVLVWQALLGACSIHG 541
           S    +P +  V  W A++    +HG
Sbjct: 500 SLFYEVPHQSSV-SWNAIISCHGLHG 524


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 191/606 (31%), Positives = 317/606 (52%), Gaps = 15/606 (2%)

Query: 43   NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
            +Y+ IS LL       H   G  LH    K+           + +   + NSLLS Y + 
Sbjct: 451  DYITISALLPACGSAQHLKWGRGLHGLITKS----------GLESNVCVCNSLLSMYAQA 500

Query: 103  DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
                +A  +F  MP RD +SWN+M++  + +G++          L+     ++  +FT  
Sbjct: 501  GSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTR-KAMNYVTFTTA 559

Query: 163  LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            LSAC   E     K++H  V        + +GN L+T Y K G     +KV   M  R+V
Sbjct: 560  LSACYNLE---KLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDV 616

Query: 223  ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHG 281
            +TW A+I G   ++     ++ F  M    +  N +T ++ +  C     L + G  IH 
Sbjct: 617  VTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHA 676

Query: 282  ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
             +     + D  ++S+L+ MY++CG +  +  IF+     +  +   I    A  G  EE
Sbjct: 677  HIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEE 736

Query: 342  AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            A++   +M   G+++D    S  L   G  T L  G+Q+HS IIK  F  + +V N  ++
Sbjct: 737  ALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMD 796

Query: 402  MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            MY KCG+++D  ++      R+  SWN +I+A ARHG   +A E + EM   G++P  VT
Sbjct: 797  MYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVT 856

Query: 462  FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
            F+SLL ACSH GLV++G+ +  SMT    +    EH  C++D++GR+G L EA  FI++M
Sbjct: 857  FVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKM 916

Query: 522  PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
            PV P+  VW++LL AC +HG+ E+G+ AA++LF       + Y+L +N+ + + RW +  
Sbjct: 917  PVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVE 976

Query: 582  KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
               K+M+   + K+   SWI+++ +V +F + D+ HPQ+  I+  L EL ++  +EG++P
Sbjct: 977  NVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMP 1036

Query: 642  NKRFIL 647
            +  + L
Sbjct: 1037 DTSYAL 1042



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 243/504 (48%), Gaps = 28/504 (5%)

Query: 47  ISRLLSISAKE-GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           +SR L     E    ++G +LHA  +K            +   T   N+L++ Y K   +
Sbjct: 149 VSRFLQKGFSEISEGNVGKALHALCVKDV----------IQQNTFYTNTLVNMYSKFGSI 198

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--IL 163
           + A  +FD M  R+  SWN M+SGF+R G +     FF    E G   +  +S+ I  ++
Sbjct: 199 KYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENG---VTPSSYVIASMV 255

Query: 164 SACDRSE-LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           +ACDRS  ++  ++ IH  V  CG    V VG +L+  Y   GS S   K+F E+   N+
Sbjct: 256 TACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNI 315

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           ++WT+++     N   +E L ++  + H GLI   + T  + +  C        G QI G
Sbjct: 316 VSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGN-TMATVIRTCGMFGDKTMGYQILG 374

Query: 282 ILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            + K  L  S + + ++L+ M+    SVE+A ++F   +E D +S   I+   A NG  E
Sbjct: 375 DVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFE 434

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           E++  F  M +   + D   +SA+L   G    L  G+ +H LI KS   SN  V N L+
Sbjct: 435 ESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLL 494

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +MY++ G  ED+  VF  M  R+ +SWNSM+A+    G    A+ L  EM         V
Sbjct: 495 SMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYV 554

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF + L AC ++  +     F+      H +         +V M G+ GL+ EA+   + 
Sbjct: 555 TFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNT----LVTMYGKFGLMDEAQKVCKI 610

Query: 521 MPVKPDVLVWQALLGACSIHGDSE 544
           MP + DV+ W AL+G    H D +
Sbjct: 611 MPER-DVVTWNALIGG---HADDK 630


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 196/606 (32%), Positives = 314/606 (51%), Gaps = 46/606 (7%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRD-- 119
           G +    F K  +   +  +  V    V WN+++S Y +  Q   A K F +M  ++D  
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFK 324

Query: 120 --TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
              VSW  +++G  +NG        F++ +  G  + +  +    +SAC    L    + 
Sbjct: 325 PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV-KPNSITIASAVSACTNLSLLRHGRE 383

Query: 178 IHCLVYLCGYEE---EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           IH   Y    EE   ++ VGN+L+  Y KC S    R+ FG ++  ++++W A+++G   
Sbjct: 384 IHG--YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 235 NQLYEEGLKL-----------------------------------FVKMHLGLINPNSLT 259
              +EE ++L                                   F +MH   ++PN+ T
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
              ++ AC  ++ L  G++IHG + +  ++    + SAL+ MYS C S+E A  +F    
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D V    I+   AQ+G    A+ L  +M  + +E++   + + L       +L  GK+
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH  II+    +  F+ N LI+MY +CG ++ S ++F  M  R+ VSWN MI+ +  HG 
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G  A+ L++  +  G++P  +TF +LL ACSH GL+ +G ++ K M   + + P  E YA
Sbjct: 682 GMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++ RAG   E   FIE+MP +P+  VW +LLGAC IH + ++ +YAA  LF  +P 
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           S   Y+LMANIYS +GRW++ AK    MKE GV K  G SWIE+++++HSFVV D  HP 
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861

Query: 620 ADTIHG 625
            + I G
Sbjct: 862 MEQISG 867



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 196/438 (44%), Gaps = 62/438 (14%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           +  LG  +HA  +          V  V     + + LL  Y +   + +A ++FD M  R
Sbjct: 104 NLRLGFQVHAQLV----------VNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSER 153

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           +  SW  ++  +   G+++     F   +  G  + D   F  +  AC   +   V K +
Sbjct: 154 NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGV-RPDHFVFPKVFKACSELKNYRVGKDV 212

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           +  +   G+E    V  +++  + KCG     R+ F E+  ++V  W  ++SG      +
Sbjct: 213 YDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEF 272

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           ++ LK    M L  + P+ +T+                                   +A+
Sbjct: 273 KKALKCISDMKLSGVKPDQVTW-----------------------------------NAI 297

Query: 299 MDMYSKCGSVEDAWQIF-------EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           +  Y++ G  E+A + F       +F   +  VS T ++ G  QNG++ EA+ +F KMV 
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNV--VSWTALIAGSEQNGYDFEALSVFRKMVL 355

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-SDFTSNPFVNNGLINMYSKCG 407
            G++  PN ++    V    T+L L   G++IH   IK  +  S+  V N L++ Y+KC 
Sbjct: 356 EGVK--PNSITIASAVSAC-TNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            +E + + F  +   + VSWN+M+A +A  G+  +A+EL  EMK +G+EP  +T+  L+ 
Sbjct: 413 SVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVT 472

Query: 468 ACSHVGLVNKGMEFLKSM 485
             +  G     +EF + M
Sbjct: 473 GFTQYGDGKAALEFFQRM 490



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 205/448 (45%), Gaps = 61/448 (13%)

Query: 38  KLVLD----NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           K+VL+    N + I+  +S          G  +H   IK  E  D+          ++ N
Sbjct: 352 KMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV-EELDSD--------LLVGN 402

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM--------------------------- 126
           SL+ +Y KC  +  A + F  +   D VSWN M                           
Sbjct: 403 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEP 462

Query: 127 --------VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSK 176
                   V+GF + G+      FF+R   +G   +D  + TI   L+AC +     + K
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMHSMG---MDPNTTTISGALAACGQVRNLKLGK 519

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  V     E    VG+ALI+ Y  C S      VF E+  R+V+ W ++IS   Q+ 
Sbjct: 520 EIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSG 579

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
                L L  +M+L  +  N++T +S++ ACS L AL +G++IH  + +  L +   I +
Sbjct: 580 RSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILN 639

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+DMY +CGS++ + +IF+   + D VS  V++  +  +GF  +A+ LF      G++ 
Sbjct: 640 SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK- 698

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS 412
            PN ++    +    +  GL ++   +  ++K+++  +P V     ++++ S+ G   ++
Sbjct: 699 -PNHIT-FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNET 756

Query: 413 IKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           ++   +M    N+  W S++ A   H N
Sbjct: 757 LEFIEKMPFEPNAAVWGSLLGACRIHCN 784



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 183/435 (42%), Gaps = 63/435 (14%)

Query: 250 LGLINPNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLC--IESALMDMYSKC 305
           + L NP+     Y S +  C  L  L  G Q+H  L  +    D+C  + S L+++Y + 
Sbjct: 80  MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQL--VVNGVDVCEFLGSRLLEVYCQT 137

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G VEDA ++F+   E +  S T I+  +   G  EE ++LF  MV  G+  D  +   V 
Sbjct: 138 GCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVF 197

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  +  +GK ++  ++   F  N  V   +++M+ KCG ++ + + F  +  ++  
Sbjct: 198 KACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVF 257

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
            WN M++ +   G   KAL+   +MKL GV+P  VT+ +++   +  G   +  ++   M
Sbjct: 258 MWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEM 317

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACS---- 538
             +    P    +  ++    + G   EA S   +M    VKP+ +   + + AC+    
Sbjct: 318 GGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSL 377

Query: 539 ------IHG--------DSEM---------------GKYAAEKLFLAQPDSPAPYILMAN 569
                 IHG        DS++                + A  K  + +      +  M  
Sbjct: 378 LRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA 437

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISW----------------IEIEKQVHSFVVD 613
            Y+  G  +E  + +  MK  G++ +  I+W                +E  +++HS  +D
Sbjct: 438 GYALRGSHEEAIELLSEMKFQGIEPDI-ITWNGLVTGFTQYGDGKAALEFFQRMHSMGMD 496

Query: 614 DKMHPQADTIHGVLA 628
               P   TI G LA
Sbjct: 497 ----PNTTTISGALA 507


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 308/585 (52%), Gaps = 15/585 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S LL   +K      G SLHA+ +KT    D            + N +L+ Y KC    
Sbjct: 6   LSSLLHHCSKTKALRCGLSLHAAVLKTGTQSD----------VFMSNHVLNMYAKCGHTT 55

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD+M  ++ VSW+ M+SG+ + GE  M    + +     F   ++  F  ++SAC
Sbjct: 56  FARQVFDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQM----FLVPNEYVFASVISAC 111

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  + + IH      GYE    V N+LI+ Y KC   S    VF      N +++ 
Sbjct: 112 ASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYN 171

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+I+G V+NQ  E GL+ F  M    + P+   ++  +  C+  + L  G ++H    KL
Sbjct: 172 ALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKL 231

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L S   I + ++ MYS+   +++A + F   EE D +S   ++   +      + +++F
Sbjct: 232 NLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVF 291

Query: 347 VKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
             M +   +  D    ++ L       S+  GKQIH+ ++++    +  V N L+NMY+K
Sbjct: 292 KHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAK 351

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +  +  +FS+M   N VSWN++IA F  HG G +A+EL+E+M   G+ P  VTF+ L
Sbjct: 352 CGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGL 411

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L AC+H GLV+KG  +  SM E + I+P  EH++C++DM+GRAG L EA  ++ + P   
Sbjct: 412 LTACNHAGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWN 471

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           D +V  +LL A  +HGD  +G+  A+ L   QP + +PY+L++N+Y+  G W   A+A K
Sbjct: 472 DPVVLVSLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARK 531

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           R+K  G+ KE G S IE+   V  F + D  H +   I G+L  L
Sbjct: 532 RLKGSGLKKEPGHSLIEVNGSVEKFTIGDFTHLRIKEIKGILKTL 576


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 190/552 (34%), Positives = 287/552 (51%), Gaps = 3/552 (0%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K D   +A  +    P R+ VSW +++SG  +NG F      F      G    D  +
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPND-FT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F     A     L +  K IH L   CG   +V VG +    Y K       RK+F E+ 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RN+ TW A IS  V +    E ++ F++      +PNS+T+ + + ACS    L  G Q
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +HG++ +    +D+ + + L+D Y KC  +  +  IF      + VS   ++  + QN  
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +E+A  L+++  K  +E    M+S+VL        L LG+ IH+  +K+      FV + 
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSA 300

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++MY KCG +EDS + F  M  +N V+ NS+I  +A  G    AL L+EEM   G  PT
Sbjct: 301 LVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPT 360

Query: 459 D--VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
              +TF+SLL ACS  G V  GM+   SM   + I P AEHY+C+VDM+GRAG++  A  
Sbjct: 361 PNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYE 420

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FI++MP++P + VW AL  AC +HG  ++G  AAE LF   P     ++L++N ++ +GR
Sbjct: 421 FIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGR 480

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W E     + +K +G+ K  G SWI ++ QVH+F   D+ H     I   LA+L   M  
Sbjct: 481 WAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEA 540

Query: 637 EGYVPNKRFILH 648
            GY P+ +  L+
Sbjct: 541 AGYKPDLKLSLY 552



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 28/287 (9%)

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           H +LG  LH   +++   FD            + N L+ FY KC Q+R++  +F +M  +
Sbjct: 174 HLNLGMQLHGLVLRS--GFDTD--------VSVCNGLIDFYGKCKQIRSSEIIFTEMGTK 223

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           + VSW ++V+ +++N E +     + RS +    +      + +LSAC       + + I
Sbjct: 224 NAVSWCSLVAAYVQNHEDEKASVLYLRSRK-DIVETSDFMISSVLSACAGMAGLELGRSI 282

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H        E  + VG+AL+  Y KCG      + F EM  +N++T  ++I G       
Sbjct: 283 HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQV 342

Query: 239 EEGLKLFVKMHLGLI--NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE- 295
           +  L LF +M        PN +T++S + ACS   A+  G +I       +++S   IE 
Sbjct: 343 DMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFD-----SMRSTYGIEP 397

Query: 296 -----SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
                S ++DM  + G VE A   +EF +++  +  T+ + G  QN 
Sbjct: 398 GAEHYSCIVDMLGRAGMVERA---YEFIKKMP-IQPTISVWGALQNA 440



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 6/184 (3%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSK    E A  +       + VS T ++ G AQNG    A+  F +M + G+   PN 
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVV--PND 58

Query: 361 VSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
            +     F    SL L   GKQIH+L +K     + FV     +MY K    +D+ K+F 
Sbjct: 59  FTFPCA-FKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFD 117

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  RN  +WN+ I+     G   +A+E + E +     P  +TF + L+ACS    +N 
Sbjct: 118 EIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNL 177

Query: 478 GMEF 481
           GM+ 
Sbjct: 178 GMQL 181



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 6/135 (4%)

Query: 402 MYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           MYSK  D  +S ++  R+ P RN VSW S+I+  A++G+   AL  + EM+ EGV P D 
Sbjct: 1   MYSKL-DHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDF 59

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLIEARSFIE 519
           TF     A + + L   G +      +  RI        C   DM  +  L  +AR   +
Sbjct: 60  TFPCAFKAVASLRLPVTGKQIHALAVKCGRILD--VFVGCSAFDMYCKTRLRDDARKLFD 117

Query: 520 RMPVKPDVLVWQALL 534
            +P + ++  W A +
Sbjct: 118 EIPER-NLETWNAFI 131


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 309/558 (55%), Gaps = 16/558 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M +A ++F++MP R+ V+W T++ GF++N +       F+  L  G Y  
Sbjct: 105 LVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYP- 163

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
              + + +L AC   +   +    H  +     + + +VG+AL + Y KCG      K F
Sbjct: 164 SIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAF 223

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +R +NVI+WT+ +S    N    +GL+LFV+M    I PN  T  S++  C  + +L 
Sbjct: 224 SRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLE 283

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+  +  K   +S+L + ++L+ +Y K G + +A + F   +++  V+   ++ G A
Sbjct: 284 LGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHA 343

Query: 335 Q-------------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           Q              G   EA+++F K+ ++G++ D   +S+VL V     ++  G+QIH
Sbjct: 344 QMMELTKDNLSACQRG--SEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIH 401

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           +  IK+ F S+  V+  LI+MY+KCG +E + K F  M+ R  ++W SMI  F++HG   
Sbjct: 402 AQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQ 461

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL ++E+M L GV P  VTF+ +L ACSH G+V++ + + + M + ++I P  +HY C+
Sbjct: 462 QALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECM 521

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           VDM  R G L +A +FI++M  +P   +W   +  C  HG+ E+G YA+E+L   +P  P
Sbjct: 522 VDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDP 581

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+L+ N+Y  + R+ + ++  K M+   V K    SWI I+ +V+SF  +DK HP + 
Sbjct: 582 ETYVLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSS 641

Query: 622 TIHGVLAELLRLMIDEGY 639
            I   L +LL    + GY
Sbjct: 642 LICKSLEDLLAKAKNLGY 659



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 192/393 (48%), Gaps = 13/393 (3%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           ++++H  V   G  +   V + L+  Y KCG+    R+VF  M  RNV+ WT ++ G VQ
Sbjct: 83  TQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQ 142

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           N   +  + +F +M      P+  T  + + ACS LQ+L  G Q H  + K  L  D  +
Sbjct: 143 NSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSV 202

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SAL  +YSKCG +EDA + F    E + +S T  +     NG   + ++LFV+M+   I
Sbjct: 203 GSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDI 262

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           + +   +++ L       SL LG Q+ SL IK  + SN  V N L+ +Y K G + ++ +
Sbjct: 263 KPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHR 322

Query: 415 VFSRMAPRNSVSWNSMIAAFARH-----------GNGFKALELYEEMKLEGVEPTDVTFL 463
            F+RM   + V+WN+MIA  A+              G +AL+++ ++   G++P   T  
Sbjct: 323 FFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLS 382

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S+L  CS +  + +G +      +   +S      + ++ M  + G +  A      M  
Sbjct: 383 SVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTS-LISMYNKCGSIERASKAFLEMST 441

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           +  ++ W +++   S HG S+   +  E + LA
Sbjct: 442 R-TMIAWTSMITGFSQHGMSQQALHIFEDMSLA 473



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 206/429 (48%), Gaps = 45/429 (10%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG   HA  IK    FD          T + ++L S Y KC ++ +A+K F  +  ++ +
Sbjct: 183 LGDQFHAYIIKYHLDFD----------TSVGSALCSLYSKCGRLEDALKAFSRIREKNVI 232

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI---ILSACDRSELSLVSKMI 178
           SW + VS    NG    G   F   +E+    +    FT+   +   C+   L L +++ 
Sbjct: 233 SWTSAVSACGDNGAPVKGLRLF---VEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVC 289

Query: 179 H-CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ--- 234
             C+ +  GYE  + V N+L+  Y K G      + F  M   +++TW A+I+G  Q   
Sbjct: 290 SLCIKF--GYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMME 347

Query: 235 --------NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
                    Q   E LK+F K++   + P+  T  S +  CS + A+ +G QIH    K 
Sbjct: 348 LTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKT 407

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              SD+ + ++L+ MY+KCGS+E A + F        ++ T ++ GF+Q+G  ++A+ +F
Sbjct: 408 GFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIF 467

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--IIKSDFTSNPFVNN--GLINM 402
             M  AG+   PN V+ V GV    +  G+  Q  +   I++  +   P +++   +++M
Sbjct: 468 EDMSLAGVR--PNTVTFV-GVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDM 524

Query: 403 YSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGFKALEL--YEEMKLEGVEPTD 459
           + + G LE ++    +M    S   W++ IA    HGN    LEL  Y   +L  ++P D
Sbjct: 525 FVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGN----LELGFYASEQLLSLKPKD 580

Query: 460 V-TFLSLLH 467
             T++ LL+
Sbjct: 581 PETYVLLLN 589



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 155/306 (50%), Gaps = 9/306 (2%)

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           L Y+  +  C   ++    + +HG + K     +  + S L+++Y+KCG++EDA ++FE 
Sbjct: 65  LFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFEN 124

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
               + V+ T ++VGF QN   + A+ +F +M+ AG       +SAVL       SL LG
Sbjct: 125 MPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLG 184

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
            Q H+ IIK     +  V + L ++YSKCG LED++K FSR+  +N +SW S ++A   +
Sbjct: 185 DQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDN 244

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAE 496
           G   K L L+ EM  E ++P + T  S L  C  +  +  G +      +  +  + R  
Sbjct: 245 GAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVR 304

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           +   ++ +  ++G ++EA  F  RM     ++ W A+     I G ++M +   + L   
Sbjct: 305 N--SLLYLYLKSGFIVEAHRFFNRMD-DVSMVTWNAM-----IAGHAQMMELTKDNLSAC 356

Query: 557 QPDSPA 562
           Q  S A
Sbjct: 357 QRGSEA 362



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +LS+ ++      G  +HA  IKT             +  ++  SL+S Y KC  + 
Sbjct: 381 LSSVLSVCSRMLAIEQGEQIHAQTIKT----------GFLSDVIVSTSLISMYNKCGSIE 430

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A K F +M  R  ++W +M++GF ++G        F+  + L   + +  +F  +LSAC
Sbjct: 431 RASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFE-DMSLAGVRPNTVTFVGVLSAC 489

Query: 167 DRS 169
             +
Sbjct: 490 SHA 492


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/557 (33%), Positives = 305/557 (54%), Gaps = 3/557 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           + L+  Y+KC  +  A KLFD+MP R  V+WN+M+S  +  G+       +   L  G  
Sbjct: 39  HKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVL 98

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSSGR 211
             D  +F+ I  A     +S   +  H L  + G+E  +  V   ++  Y K G     R
Sbjct: 99  P-DAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAR 157

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF  +  ++V+ +TA+I G  Q  L  E L++F  M    I PN  T  S +++C  L 
Sbjct: 158 FVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLG 217

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            L  G+ IHG++ K  L+S +  +++L+ MYSKC  VED+ ++F        V+ T  +V
Sbjct: 218 DLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIV 277

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  QNG EE A+ +F +M++  I  +    S++L        L  G+QIH++ +K     
Sbjct: 278 GLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDG 337

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N +V+  LI++Y KCG++E +  VF  +   + VS N+MI A+A++G G +ALEL+E MK
Sbjct: 338 NKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMK 397

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G +P  VTF+S+L AC++ GLV +G +    +   H I    +HY C++D++GRA   
Sbjct: 398 KLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRF 457

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   IE     PDV+ W+ LL AC IHG+ EM +   +K+    P     +IL+ NIY
Sbjct: 458 EEAAMLIEEGK-NPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIY 516

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           + +G+W    +     +++ + K   +SW++I+++VH+F+  D  HP+A  I  +L EL+
Sbjct: 517 ASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELI 576

Query: 632 RLMIDEGYVPNKRFILH 648
             +I  GY P+ +F+L 
Sbjct: 577 EKVITLGYNPDTKFVLQ 593



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 189/349 (54%), Gaps = 3/349 (0%)

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
           G+ LI  Y KC   +  RK+F EM  R+++TW ++IS  V     +E ++L+  M    +
Sbjct: 38  GHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGV 97

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAW 312
            P++ T+ +   A S +    EG++ HG+   L  + SD  + + ++DMY+K G ++DA 
Sbjct: 98  LPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAR 157

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F+   + D V  T ++VG+ Q G + EA+++F  MV + I+ +   +++VL   G   
Sbjct: 158 FVFDRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLG 217

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  GK IH L++KS   S       L+ MYSKC  +EDSIKVF+ +A  + V+W S I 
Sbjct: 218 DLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIV 277

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
              ++G    AL ++ EM    + P   TF S+LHACS + ++  G E + ++T    + 
Sbjct: 278 GLVQNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAG-EQIHAVTVKLGVD 336

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                 A ++ + G+ G + +ARS  E +  + DV+    ++ A + +G
Sbjct: 337 GNKYVDAALIHLYGKCGNVEKARSVFESL-TELDVVSINTMIYAYAQNG 384



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 7/217 (3%)

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N  ++++  F    SL   K +H+ I+KS  +   F  + LI+ Y KC  + ++ K+F  
Sbjct: 2   NCYTSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDE 60

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  R+ V+WNSMI++    G   +A+ELY+ M  EGV P   TF ++  A S +G+  +G
Sbjct: 61  MPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREG 120

Query: 479 MEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
            +    +  V          A  +VDM  + G + +AR   +R+ +  DV+++ AL+   
Sbjct: 121 QK-AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRV-LDKDVVLFTALIVGY 178

Query: 538 SIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           +  G D E  +   +   +     P  Y L + + SC
Sbjct: 179 NQRGLDGEALEVFED--MVGSRIKPNEYTLASVLVSC 213


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 322/601 (53%), Gaps = 12/601 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S LLS+     H   G  +H   +K    FD+           + N+LL  Y   
Sbjct: 350 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM--GFDS--------VVCVCNTLLRMYAGA 399

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +   A  +F  MP +D +SWN++++ F+ +G      G     +  G   ++  +FT  
Sbjct: 400 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSA 458

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L+AC   +     +++H LV + G      +GNAL++ Y K G  S  R+V  +M  R+V
Sbjct: 459 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV 518

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHG 281
           + W A+I G  +++  ++ L  F  M +  ++ N +T +S + AC     L E G+ +H 
Sbjct: 519 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 578

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +     +SD  ++++L+ MY+KCG +  +  +F   +  + ++   +L   A +G  EE
Sbjct: 579 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 638

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            ++L  KM   G+ +D    S  L        L  G+Q+H L +K  F  + F+ N   +
Sbjct: 639 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 698

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG++ + +K+      R+  SWN +I+A  RHG   +    + EM   G++P  VT
Sbjct: 699 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 758

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SLL ACSH GLV+KG+ +   +     + P  EH  CV+D++GR+G L EA +FI +M
Sbjct: 759 FVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 818

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+ LVW++LL +C IHG+ + G+ AAE L   +P+  + Y+L +N+++ +GRW++  
Sbjct: 819 PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVE 878

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              K+M    + K+   SW++++ +V SF + D+ HPQ   I+  L ++ +L+ + GYV 
Sbjct: 879 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 938

Query: 642 N 642
           +
Sbjct: 939 D 939



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 145/447 (32%), Positives = 220/447 (49%), Gaps = 33/447 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y K  +++ A  LFD MP+R+ VSWNTM+SG +R G +  G  FF++  +LG  
Sbjct: 111 NTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG-- 168

Query: 153 QLDQASFTI--ILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            +  +SF I  +++AC RS  +      +H  V   G   +V V  A++  Y   G  S 
Sbjct: 169 -IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSC 227

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RKVF EM  RNV++WT+++ G       EE + ++    LG                  
Sbjct: 228 SRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLG------------------ 269

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                  RQI G + K  L+S L +E++L+ M    G+V+ A  IF+   E D +S   I
Sbjct: 270 -------RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSI 322

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
              +AQNG  EE+ ++F  M +   E++   VS +L V G       G+ IH L++K  F
Sbjct: 323 AAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF 382

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S   V N L+ MY+  G   ++  VF +M  ++ +SWNS++A+F   G    AL L   
Sbjct: 383 DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCS 442

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G     VTF S L AC       KG   L  +  V  +         +V M G+ G
Sbjct: 443 MISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIG 501

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGA 536
            + E+R  + +MP + DV+ W AL+G 
Sbjct: 502 EMSESRRVLLQMP-RRDVVAWNALIGG 527



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 1/178 (0%)

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           GR +H +  K  ++  +   + L++MY+K G V+ A  +F+     + VS   ++ G  +
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL-GLGKQIHSLIIKSDFTSNPF 394
            G   E M+ F KM   GI+    ++++++   G   S+   G Q+H  + KS   S+ +
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
           V+  ++++Y   G +  S KVF  M  RN VSW S++  ++  G   + +++Y++  L
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL 268



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+ +H+L +K     +    N LINMY+K G ++ +  +F  M  RN VSWN+M++   R
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
            G   + +E + +M   G++P+     SL+ AC   G         +   +VH    ++ 
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG------SMFREGVQVHGFVAKSG 204

Query: 497 HYA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
             +       ++ + G  GL+  +R   E MP + +V+ W +L+   S  G+ E
Sbjct: 205 LLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSDKGEPE 257


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 194/604 (32%), Positives = 313/604 (51%), Gaps = 8/604 (1%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++  LL  SA       G ++HA  +   +   + ++  +       NSL++ Y KC Q 
Sbjct: 25  EVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQI-------NSLINLYSKCGQS 77

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           + A KLFD M  R+ VSW+ ++ G+L  GE     G F+  + L     ++  FTI+LS 
Sbjct: 78  KCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSC 137

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  S      K  H  +   G      V NALI  Y +C    S  ++   +   +V ++
Sbjct: 138 CADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSY 197

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            +++S LV++    E  ++  +M    +  +S+TY+S +  C+ ++ L  G QIH  L K
Sbjct: 198 NSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLK 257

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             L  D+ + S L+D Y KCG V +A + F+   + + V+ T +L  + QNG  EE + L
Sbjct: 258 TGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNL 317

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F KM       +    + +L       +L  G  +H  I+ S F ++  V N LINMYSK
Sbjct: 318 FTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSK 377

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G+++ S  VFS M  R+ ++WN+MI  ++ HG G +AL ++++M   G  P  VTF+ +
Sbjct: 378 SGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGV 437

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-VK 524
           L AC H+ LV +G  +   + +   + P  EHY C+V ++GRAGLL EA +F++    VK
Sbjct: 438 LSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVK 497

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            DV+ W+ LL AC IH +  +GK   E +    P     Y L++N+++ + +W    K  
Sbjct: 498 WDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIR 557

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
           K MKE  + KE G SW++I    H FV +   HP++  I   + +LL ++   GY P+  
Sbjct: 558 KLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVG 617

Query: 645 FILH 648
            +LH
Sbjct: 618 VVLH 621


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 322/601 (53%), Gaps = 12/601 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S LLS+     H   G  +H   +K    FD+           + N+LL  Y   
Sbjct: 260 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM--GFDS--------VVCVCNTLLRMYAGA 309

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +   A  +F  MP +D +SWN++++ F+ +G      G     +  G   ++  +FT  
Sbjct: 310 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSA 368

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L+AC   +     +++H LV + G      +GNAL++ Y K G  S  R+V  +M  R+V
Sbjct: 369 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV 428

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHG 281
           + W A+I G  +++  ++ L  F  M +  ++ N +T +S + AC     L E G+ +H 
Sbjct: 429 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 488

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +     +SD  ++++L+ MY+KCG +  +  +F   +  + ++   +L   A +G  EE
Sbjct: 489 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 548

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            ++L  KM   G+ +D    S  L        L  G+Q+H L +K  F  + F+ N   +
Sbjct: 549 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 608

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG++ + +K+      R+  SWN +I+A  RHG   +    + EM   G++P  VT
Sbjct: 609 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 668

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SLL ACSH GLV+KG+ +   +     + P  EH  CV+D++GR+G L EA +FI +M
Sbjct: 669 FVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 728

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+ LVW++LL +C IHG+ + G+ AAE L   +P+  + Y+L +N+++ +GRW++  
Sbjct: 729 PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVE 788

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              K+M    + K+   SW++++ +V SF + D+ HPQ   I+  L ++ +L+ + GYV 
Sbjct: 789 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 848

Query: 642 N 642
           +
Sbjct: 849 D 849



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 227/443 (51%), Gaps = 12/443 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K  +++ A  LFD MP+R+ VSWNTM+SG +R G +  G  FF++  +LG   +  +S
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG---IKPSS 58

Query: 159 FTI--ILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
           F I  +++AC RS  +      +H  V   G   +V V  A++  Y   G  S  RKVF 
Sbjct: 59  FVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFE 118

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI--NPNSLTYLSSVMACSGLQAL 273
           EM  RNV++WT+++ G       EE + ++  M    +  N NS++ +  + +C  L+  
Sbjct: 119 EMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV--ISSCGLLKDE 176

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             GRQI G + K  L+S L +E++L+ M    G+V+ A  IF+   E D +S   I   +
Sbjct: 177 SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 236

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQNG  EE+ ++F  M +   E++   VS +L V G       G+ IH L++K  F S  
Sbjct: 237 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVV 296

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N L+ MY+  G   ++  VF +M  ++ +SWNS++A+F   G    AL L   M   
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 356

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G     VTF S L AC       KG   L  +  V  +         +V M G+ G + E
Sbjct: 357 GKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415

Query: 514 ARSFIERMPVKPDVLVWQALLGA 536
           +R  + +MP + DV+ W AL+G 
Sbjct: 416 SRRVLLQMP-RRDVVAWNALIGG 437



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 225/459 (49%), Gaps = 22/459 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+S       +  A  +FD M  RDT+SWN++ + + +NG  +  F  F  SL   F+
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF--SLMRRFH 256

Query: 153 -QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            +++  + + +LS     +     + IH LV   G++  V V N L+  Y   G S    
Sbjct: 257 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 316

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF +M  +++I+W ++++  V +    + L L   M     + N +T+ S++ AC    
Sbjct: 317 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 376

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
              +GR +HG++    L  +  I +AL+ MY K G + ++ ++       D V+   ++ 
Sbjct: 377 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 436

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFT 390
           G+A++   ++A+  F  M   G+  +   V +VL    +    L  GK +H+ I+ + F 
Sbjct: 437 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 496

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V N LI MY+KCGDL  S  +F+ +  RN ++WN+M+AA A HG+G + L+L  +M
Sbjct: 497 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 556

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EH----YACVVDM 504
           +  GV     +F   L A + + ++ +G        ++H ++ +   EH    +    DM
Sbjct: 557 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQ-------QLHGLAVKLGFEHDSFIFNAAADM 609

Query: 505 VGRAGLLIEARSFIERMP--VKPDVLVWQALLGACSIHG 541
             + G   E    ++ +P  V   +  W  L+ A   HG
Sbjct: 610 YSKCG---EIGEVVKMLPPSVNRSLPSWNILISALGRHG 645



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 13/149 (8%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G ++ +  +F  M  RN VSWN+M++   R G   + +E + +M   G++P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEAR 515
             SL+ AC   G         +   +VH    ++   +       ++ + G  GL+  +R
Sbjct: 61  IASLVTACGRSG------SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSR 114

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSE 544
              E MP + +V+ W +L+   S  G+ E
Sbjct: 115 KVFEEMPDR-NVVSWTSLMVGYSDKGEPE 142


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 308/555 (55%), Gaps = 4/555 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+  Y +   + +A ++FD  P     +WN M+  + R G        + R    G  + 
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGV-RP 103

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D +++T++L AC RS      +         GY ++V VG A++  Y KCG      +VF
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  R+++ WT +I+GL QN    E + ++ +MH   +  + +  L  + AC+ L    
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSK 223

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G  IHG + +  +  D+ ++++L+DMY+K G +E A  +F      + +S + ++ GFA
Sbjct: 224 MGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFA 283

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           QNGF   A+QL V M   G + D  ++VS +L    V   L LGK +H  I++     + 
Sbjct: 284 QNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGF-LKLGKSVHGYIVRR-LHFDC 341

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
             +  +I+MYSKCG L  +  VF +++ R+S+SWN++IA++  HG+G +AL L+ +M+  
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRET 401

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            V+P   TF SLL A SH GLV KG  +   M   ++I P  +HYAC+VD++ RAG + E
Sbjct: 402 NVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEE 461

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A+  IE M  +P + +W ALL  C  HG   +G+ AA+K+    PD P  Y L++N ++ 
Sbjct: 462 AQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFAT 521

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           + RW E A+  K MK+ G+ K  G S +E+  ++H+F+++DK H Q + I  VL +L   
Sbjct: 522 ARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYE 581

Query: 634 MIDEGYVPNKRFILH 648
           M   GYVP   F+LH
Sbjct: 582 MKAMGYVPKTEFVLH 596



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 208/416 (50%), Gaps = 38/416 (9%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH L+ L G          LI SY + G   S R+VF +     V  W A+I    +   
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS----DLC 293
             E L L+ +M    + P+S TY   + AC+    L  G +     W+ A+      D+ 
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEET----WRQAVDQGYGDDVF 141

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +A++++Y+KCG +++A ++F+     D V  T ++ G AQNG   EA+ ++ +M K  
Sbjct: 142 VGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKR 201

Query: 354 IEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           +E D      +LG+    T+LG   +G  IH  +I+ D   +  V   L++MY+K G LE
Sbjct: 202 VEGDG---VVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLE 258

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +  VF RM  +N +SW+++I+ FA++G    AL+L  +M+  G +P  V+ +S+L ACS
Sbjct: 259 LASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACS 318

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYAC-----VVDMVGRAGLLIEARSFIERMPVKP 525
            VG       FLK    VH    R  H+ C     V+DM  + G L  AR+  +++  + 
Sbjct: 319 QVG-------FLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR- 370

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFL------AQPDSPAPYILMANIYSCSG 575
           D + W A++ +  IHG  E     A  LFL       +PD  A +  + + +S SG
Sbjct: 371 DSISWNAIIASYGIHGSGE----EALSLFLQMRETNVKPDH-ATFASLLSAFSHSG 421



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 187/376 (49%), Gaps = 8/376 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           ++L+ Y KC +M  A+++FD M  RD V W TM++G  +NG+       + R +     +
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIY-RQMHKKRVE 203

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D      ++ AC     S +   IH  +       +V V  +L+  Y K G       V
Sbjct: 204 GDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCV 263

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  +NVI+W+A+ISG  QN      L+L V M      P+S++ +S ++ACS +  L
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFL 323

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+ +HG + +  L  D    +A++DMYSKCGS+  A  +F+     D +S   I+  +
Sbjct: 324 KLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASY 382

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
             +G  EEA+ LF++M +  ++ D    +++L  F     +  G+   S+++ +++   P
Sbjct: 383 GIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMV-NEYKIQP 441

Query: 394 FVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEM 450
              +   ++++ S+ G +E++ ++   M     ++ W ++++    HG  F   E+  + 
Sbjct: 442 SEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGK-FLIGEMAAKK 500

Query: 451 KLEGVEPTDVTFLSLL 466
            LE + P D    SL+
Sbjct: 501 VLE-LNPDDPGIYSLV 515



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 13/337 (3%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           GH  +G S+H   I+           ++    ++  SL+  Y K   +  A  +F  M  
Sbjct: 220 GHSKMGLSIHGYMIRK----------DIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLY 269

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           ++ +SW+ ++SGF +NG               G Y+ D  S   +L AC +     + K 
Sbjct: 270 KNVISWSALISGFAQNGFAGNALQLVVDMQSFG-YKPDSVSLVSVLLACSQVGFLKLGKS 328

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H  +    + + V+   A+I  Y KCGS S  R VF ++  R+ I+W A+I+    +  
Sbjct: 329 VHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGS 387

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW-KLALQSDLCIES 296
            EE L LF++M    + P+  T+ S + A S    + +GR    I+  +  +Q      +
Sbjct: 388 GEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYA 447

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
            ++D+ S+ G VE+A ++ E      G+++ V L+    N  +    ++  K V      
Sbjct: 448 CMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPD 507

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           DP + S V   F          ++  ++ K+     P
Sbjct: 508 DPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVP 544



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARH 437
           +IH+L+I +    +   N  LI  Y++ G +E + +VF + +P+  V +WN+MI A++R 
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDK-SPQCGVDAWNAMIIAYSRR 83

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G  F+AL LY  M  EGV P   T+  +L AC+    +  G E  +   +          
Sbjct: 84  GAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVD-QGYGDDVFV 142

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            A V+++  + G + EA    ++M  + D++ W  ++   + +G + 
Sbjct: 143 GAAVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMITGLAQNGQAR 188


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 322/601 (53%), Gaps = 12/601 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S LLS+     H   G  +H   +K    FD+           + N+LL  Y   
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM--GFDS--------VVCVCNTLLRMYAGA 292

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +   A  +F  MP +D +SWN++++ F+ +G      G     +  G   ++  +FT  
Sbjct: 293 GRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG-KSVNYVTFTSA 351

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L+AC   +     +++H LV + G      +GNAL++ Y K G  S  R+V  +M  R+V
Sbjct: 352 LAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDV 411

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHG 281
           + W A+I G  +++  ++ L  F  M +  ++ N +T +S + AC     L E G+ +H 
Sbjct: 412 VAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHA 471

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +     +SD  ++++L+ MY+KCG +  +  +F   +  + ++   +L   A +G  EE
Sbjct: 472 YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEE 531

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            ++L  KM   G+ +D    S  L        L  G+Q+H L +K  F  + F+ N   +
Sbjct: 532 VLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAAD 591

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MYSKCG++ + +K+      R+  SWN +I+A  RHG   +    + EM   G++P  VT
Sbjct: 592 MYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVT 651

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SLL ACSH GLV+KG+ +   +     + P  EH  CV+D++GR+G L EA +FI +M
Sbjct: 652 FVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKM 711

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+ LVW++LL +C IHG+ + G+ AAE L   +P+  + Y+L +N+++ +GRW++  
Sbjct: 712 PMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVE 771

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              K+M    + K+   SW++++ +V SF + D+ HPQ   I+  L ++ +L+ + GYV 
Sbjct: 772 NVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVA 831

Query: 642 N 642
           +
Sbjct: 832 D 832



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/427 (33%), Positives = 218/427 (51%), Gaps = 12/427 (2%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRS-EL 171
           MP+R+ VSWNTM+SG +R G +  G  FF++  +LG   +  +SF I  +++AC RS  +
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG---IKPSSFVIASLVTACGRSGSM 57

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
                 +H  V   G   +V V  A++  Y   G  S  RKVF EM  RNV++WT+++ G
Sbjct: 58  FREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVG 117

Query: 232 LVQNQLYEEGLKLFVKMHLGLI--NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
                  EE + ++  M    +  N NS++ +  + +C  L+    GRQI G + K  L+
Sbjct: 118 YSDKGEPEEVIDIYKGMRGEGVGCNENSMSLV--ISSCGLLKDESLGRQIIGQVVKSGLE 175

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           S L +E++L+ M    G+V+ A  IF+   E D +S   I   +AQNG  EE+ ++F  M
Sbjct: 176 SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLM 235

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            +   E++   VS +L V G       G+ IH L++K  F S   V N L+ MY+  G  
Sbjct: 236 RRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRS 295

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            ++  VF +M  ++ +SWNS++A+F   G    AL L   M   G     VTF S L AC
Sbjct: 296 VEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 355

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
                  KG   L  +  V  +         +V M G+ G + E+R  + +MP + DV+ 
Sbjct: 356 FTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVA 413

Query: 530 WQALLGA 536
           W AL+G 
Sbjct: 414 WNALIGG 420



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 225/459 (49%), Gaps = 22/459 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+S       +  A  +FD M  RDT+SWN++ + + +NG  +  F  F  SL   F+
Sbjct: 182 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIF--SLMRRFH 239

Query: 153 -QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            +++  + + +LS     +     + IH LV   G++  V V N L+  Y   G S    
Sbjct: 240 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 299

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF +M  +++I+W ++++  V +    + L L   M     + N +T+ S++ AC    
Sbjct: 300 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 359

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
              +GR +HG++    L  +  I +AL+ MY K G + ++ ++       D V+   ++ 
Sbjct: 360 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 419

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFT 390
           G+A++   ++A+  F  M   G+  +   V +VL    +    L  GK +H+ I+ + F 
Sbjct: 420 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 479

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+  V N LI MY+KCGDL  S  +F+ +  RN ++WN+M+AA A HG+G + L+L  +M
Sbjct: 480 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 539

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EH----YACVVDM 504
           +  GV     +F   L A + + ++ +G        ++H ++ +   EH    +    DM
Sbjct: 540 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQ-------QLHGLAVKLGFEHDSFIFNAAADM 592

Query: 505 VGRAGLLIEARSFIERMP--VKPDVLVWQALLGACSIHG 541
             + G   E    ++ +P  V   +  W  L+ A   HG
Sbjct: 593 YSKCG---EIGEVVKMLPPSVNRSLPSWNILISALGRHG 628



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 216/441 (48%), Gaps = 14/441 (3%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTIILSACD 167
           K+F++MP R+ VSW +++ G+   GE +     +K  R   +G    ++ S ++++S+C 
Sbjct: 98  KVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVG---CNENSMSLVISSCG 154

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             +   + + I   V   G E ++ V N+LI+     G+      +F +M  R+ I+W +
Sbjct: 155 LLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNS 214

Query: 228 VISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           + +   QN   EE  ++F  M      +N  +++ L SV+     Q    GR IHG++ K
Sbjct: 215 IAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKW--GRGIHGLVVK 272

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           +   S +C+ + L+ MY+  G   +A  +F+     D +S   ++  F  +G   +A+ L
Sbjct: 273 MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGL 332

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
              M+ +G  ++    ++ L           G+ +H L++ S    N  + N L++MY K
Sbjct: 333 LCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGK 392

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G++ +S +V  +M  R+ V+WN++I  +A   +  KAL  ++ M++EGV    +T +S+
Sbjct: 393 IGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSV 452

Query: 466 LHACSHVG-LVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIERMPV 523
           L AC   G L+ +G      +      S   EH    ++ M  + G L  ++     +  
Sbjct: 453 LSACLLPGDLLERGKPLHAYIVSAGFESD--EHVKNSLITMYAKCGDLSSSQDLFNGLDN 510

Query: 524 KPDVLVWQALLGACSIHGDSE 544
           + +++ W A+L A + HG  E
Sbjct: 511 R-NIITWNAMLAANAHHGHGE 530


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/545 (33%), Positives = 302/545 (55%), Gaps = 1/545 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++FY K   + +A ++FD MP+RD V+WN MV G++ NG   +    F+   +    
Sbjct: 146 NSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEV 205

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D       L+AC     S+  K IH  V   G E+++ VG +L+  Y KCG  +  R 
Sbjct: 206 QHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M +R V+TW  +I G   N+  +E    F++M    +    +T ++ + AC+  ++
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + +      + +E+AL++MY K G VE + +IF        VS   ++  
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +       EA+ LF++++   +  D   +S V+  F +  SL   +QIHS II   +  N
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N +++MY++ GD+  S ++F +M  ++ +SWN+MI  +A HG G  ALE+++EMK 
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G++P + TF+S+L ACS  GLV++G      M + + + P+ EHY C+ D++GR G L 
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           E   FIE MP+ P   VW +LL A     D ++ +YAAE++F  + D+   YI+++++Y+
Sbjct: 566 EVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYA 625

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +GRW++  +    MKE G+ +   IS +E+     SF   D  H Q+ TIH V +++L 
Sbjct: 626 DAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEV-SDILS 684

Query: 633 LMIDE 637
             I E
Sbjct: 685 RKIKE 689



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 215/459 (46%), Gaps = 27/459 (5%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           +M  AV+    +   D    N M+ GF   G        ++  LE G  + D+ +F +++
Sbjct: 56  RMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGA-RPDRFTFPVVV 114

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
             C R       +  H +V   G E +V   N+L+  Y K G      +VF  M VR+++
Sbjct: 115 KCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIV 174

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           TW  ++ G V N L    L  F +MH  L +  +S+  ++++ AC    +  +G++IHG 
Sbjct: 175 TWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGY 234

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + +  L+ D+ + ++L+DMY KCG V  A  +F        V+   ++ G+A N   +EA
Sbjct: 235 VIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEA 294

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
              F++M   G++++      +L       S   G+ +H  +++  F  +  +   L+ M
Sbjct: 295 FDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEM 354

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM----------KL 452
           Y K G +E S K+F ++A +  VSWN+MIAA+       +A+ L+ E+           +
Sbjct: 355 YGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTM 414

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             V P  V   SL H C  +     G+ + ++   ++           V+ M  R+G ++
Sbjct: 415 STVVPAFVLLGSLRH-CRQIHSYIIGLGYAENTLIMN----------AVLHMYARSGDVV 463

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            +R   ++M V  DV+ W  ++   +IHG    GK A E
Sbjct: 464 ASREIFDKM-VSKDVISWNTMIMGYAIHGQ---GKTALE 498



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 180/363 (49%), Gaps = 8/363 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SLL  Y KC ++  A  +F  MP+R  V+WN M+ G+  N   D  F  F +    G
Sbjct: 246 VGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEG 305

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q++  +   +L+AC ++E SL  + +H  V    +   V +  AL+  Y K G   S 
Sbjct: 306 L-QVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESS 364

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+FG++  + +++W  +I+  +  ++Y E + LF+++    + P+  T  + V A   L
Sbjct: 365 EKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLL 424

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   RQIH  +  L    +  I +A++ MY++ G V  + +IF+     D +S   ++
Sbjct: 425 GSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMI 484

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +G+A +G  + A+++F +M   G++ + +   +VL    V   +  G  +H  ++  ++ 
Sbjct: 485 MGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG-WMHFNLMLQEYG 543

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALEL 446
             P + +   + ++  + GDL + ++    M   P + V W S++ A +R+ N     E 
Sbjct: 544 MIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRV-WGSLLTA-SRNQNDIDIAEY 601

Query: 447 YEE 449
             E
Sbjct: 602 AAE 604



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 1/179 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +LL  Y K  ++ ++ K+F  +  +  VSWN M++ ++    +      F   L  
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             Y  D  + + ++ A          + IH  +   GY E   + NA++  Y + G   +
Sbjct: 406 PLYP-DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVA 464

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            R++F +M  ++VI+W  +I G   +   +  L++F +M    + PN  T++S + ACS
Sbjct: 465 SREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T+I N++L  Y +   +  + ++FD M  +D +SWNTM+ G+  +G+       F   ++
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDE-MK 504

Query: 149 LGFYQLDQASFTIILSACDRSEL 171
               Q ++++F  +L+AC  S L
Sbjct: 505 YNGLQPNESTFVSVLTACSVSGL 527


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 288/487 (59%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L +  R+  ++     H  +   G   +    N L+  Y KCG   S RK+F EM VR+
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  ++    QN   E+ L LF++M     + +  T  S V AC+    + E +Q+HG
Sbjct: 113 LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 172

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K AL S++ + +AL+D+Y+KCG V+DA  +FE   E   V+ + ++ G+ QN   EE
Sbjct: 173 FALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEE 232

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +    G+E +   +S+ L       +L  GKQ+ ++  K+   SN FV + LI+
Sbjct: 233 ALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLID 292

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E++  VFS +  +N V WN++++ F+RH    +A+  +E+M+  G+ P D+T
Sbjct: 293 MYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDIT 352

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           ++S+L ACSH+GLV KG ++   M  VH +SP   HY+C+VD++GRAGLL EA+ FI+RM
Sbjct: 353 YISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRM 412

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C I+ + E+ + AA+ LF  +P +   ++L++NIY+ + RW+E A
Sbjct: 413 PFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVA 472

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +A   +KE    KE G SWIEI+ +VHSF+V ++ HP+   I+  L +L+  M   GY  
Sbjct: 473 RARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKA 532

Query: 642 NKRFILH 648
                LH
Sbjct: 533 KTEHDLH 539



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/410 (30%), Positives = 206/410 (50%), Gaps = 27/410 (6%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++  LL  SA+      G + HA  I+     D          T+  N L++ Y KC  +
Sbjct: 49  ELQHLLQSSARNRAAIEGMACHAQIIRVGLRAD----------TITSNMLMNMYSKCGLV 98

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--IL 163
            +A KLFD+MP+R  VSWNTMV    +NG+ +     F +  + G      + FT+  ++
Sbjct: 99  ESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG---TSCSEFTVSSVV 155

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC         K +H        +  V VG AL+  Y KCG       VF  M  R+ +
Sbjct: 156 CACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDV 215

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           TW+++++G VQN+LYEE L LF +     +  N  T  S++ AC+   AL EG+Q+  + 
Sbjct: 216 TWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVS 275

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K  + S++ + S+L+DMY+KCG +E+A+ +F   EE + V    IL GF+++    EAM
Sbjct: 276 CKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAM 335

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-SDFTSNPFVNNGL 399
             F KM + G  I PN ++ +  V    + LGL   G++   L+I+  + + N    + +
Sbjct: 336 IYFEKMQQMG--ICPNDITYI-SVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCM 392

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE 448
           +++  + G L ++     RM    + S W S++A+   + N    LEL E
Sbjct: 393 VDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRN----LELAE 438


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 288/487 (59%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L +  R+  ++     H  +   G   +    N L+  Y KCG   S RK+F EM VR+
Sbjct: 26  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 85

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  ++    QN   E+ L LF++M     + +  T  S V AC+    + E +Q+HG
Sbjct: 86  LVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHG 145

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K AL S++ + +AL+D+Y+KCG V+DA  +FE   E   V+ + ++ G+ QN   EE
Sbjct: 146 FALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEE 205

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +    G+E +   +S+ L       +L  GKQ+ ++  K+   SN FV + LI+
Sbjct: 206 ALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLID 265

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E++  VFS +  +N V WN++++ F+RH    +A+  +E+M+  G+ P D+T
Sbjct: 266 MYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDIT 325

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           ++S+L ACSH+GLV KG ++   M  VH +SP   HY+C+VD++GRAGLL EA+ FI+RM
Sbjct: 326 YISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRM 385

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C I+ + E+ + AA+ LF  +P +   ++L++NIY+ + RW+E A
Sbjct: 386 PFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVA 445

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +A   +KE    KE G SWIEI+ +VHSF+V ++ HP+   I+  L +L+  M   GY  
Sbjct: 446 RARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKA 505

Query: 642 NKRFILH 648
                LH
Sbjct: 506 KTEHDLH 512



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/408 (30%), Positives = 205/408 (50%), Gaps = 23/408 (5%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++  LL  SA+      G + HA  I+     D          T+  N L++ Y KC  +
Sbjct: 22  ELQHLLQSSARNRAAIEGMACHAQIIRVGLRAD----------TITSNMLMNMYSKCGLV 71

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
            +A KLFD+MP+R  VSWNTMV    +NG+ +     F +  + G     + + + ++ A
Sbjct: 72  ESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEG-TSCSEFTVSSVVCA 130

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C         K +H        +  V VG AL+  Y KCG       VF  M  R+ +TW
Sbjct: 131 CAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTW 190

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           +++++G VQN+LYEE L LF +     +  N  T  S++ AC+   AL EG+Q+  +  K
Sbjct: 191 SSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCK 250

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             + S++ + S+L+DMY+KCG +E+A+ +F   EE + V    IL GF+++    EAM  
Sbjct: 251 TGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIY 310

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-SDFTSNPFVNNGLIN 401
           F KM + G  I PN ++ +  V    + LGL   G++   L+I+  + + N    + +++
Sbjct: 311 FEKMQQMG--ICPNDITYI-SVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVD 367

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE 448
           +  + G L ++     RM    + S W S++A+   + N    LEL E
Sbjct: 368 ILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRN----LELAE 411


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 299/562 (53%), Gaps = 4/562 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y++C +   A  +F  MPMRD V+WN M++G+  +G +           + G
Sbjct: 137 VSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG 196

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIH--CL-VYLCGYEEEVTVGNALITSYFKCGSS 207
             + + ++   +L    +         IH  CL   L   EE+V +G AL+  Y KC   
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
               +VF  M VRN +TW+A+I G V      E   LF  M + GL   ++ +  S++  
Sbjct: 257 VYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRV 316

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L  L  G Q+H ++ K  + +DL   ++L+ MY+K G + +A   F+     D +S 
Sbjct: 317 CASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISY 376

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L G  QNG  EEA  +F KM    +E D   + +++       +L  GK  H  +I 
Sbjct: 377 GALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVII 436

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                   + N LI+MY+KCG ++ S +VF +M  R+ VSWN+MIA +  HG G +A  L
Sbjct: 437 RGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTL 496

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  MK +G  P DVTF+ L+ ACSH GLV +G  +  +MT  + I PR EHY C+VD++ 
Sbjct: 497 FLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLA 556

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R GLL EA  FI+ MP+K DV VW ALLGAC IH + ++GK  +  +    P+    ++L
Sbjct: 557 RGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVL 616

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NI+S +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HP +  I+  
Sbjct: 617 LSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHE 676

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  ++  +   GY  +  F+L 
Sbjct: 677 LDNIMVDIKKLGYQADTSFVLQ 698



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 245/522 (46%), Gaps = 16/522 (3%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           HL P   A+  +   P      Y V +    W   L  ++   Q+  A ++FD +P  D 
Sbjct: 7   HLRPFSAATAARLHRPPSGSISYEVKDKKQ-WQQELEQHISRGQLALARQVFDRIPAPDA 65

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
            ++N ++  +   G F      ++  L       ++ +F  +L AC         + IH 
Sbjct: 66  RAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP-NKYTFPFVLKACSALVDLRAGRTIHA 124

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
                G   ++ V  ALI  Y +C      R VF +M +R+V+ W A+++G   + +Y  
Sbjct: 125 HAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHH 184

Query: 241 GLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIES 296
            +   + M   G + PN+ T +S +   +   AL +G  IH    +  L+ +   + I +
Sbjct: 185 AIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT 244

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI-E 355
           AL+DMY+KC  +  A ++F      + V+ + ++ GF       EA  LF  M+  G+  
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCF 304

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           +    V++ L V      L +G Q+H+LI KS   ++   +N L++MY+K G + ++   
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMF 364

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  +A ++++S+ ++++   ++G   +A  ++++M+   +EP   T +SL+ ACSH+  +
Sbjct: 365 FDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAAL 424

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G     S+  +  ++        ++DM  + G +  +R   ++MP + DV+ W  ++ 
Sbjct: 425 QHGKCSHGSVI-IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIA 482

Query: 536 ACSIHGDSEMGKYAAEKLFLA---QPDSPAPYILMANIYSCS 574
              IHG   +GK  A  LFL    Q  +P     +  I +CS
Sbjct: 483 GYGIHG---LGK-EATTLFLGMKNQGFAPDDVTFICLIAACS 520



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +  LL + A+ G    G S+HA  ++     + + V       +I  +LL  Y KC
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV-------LIGTALLDMYAKC 253

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            Q+  A ++F  MP+R+ V+W+ ++ GF+        F  FK  L  G   L   S    
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L  C       +   +H L+   G   ++T  N+L++ Y K G  +     F E+ V++ 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG- 281
           I++ A++SG VQN   EE   +F KM    + P+  T +S + ACS L AL  G+  HG 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 282 -ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            I+  LAL++ +C  ++L+DMY+KCG ++ + Q+F+     D VS   ++ G+  +G  +
Sbjct: 434 VIIRGLALETSIC--NSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 341 EAMQLFVKMVKAGIEID 357
           EA  LF+ M   G   D
Sbjct: 492 EATTLFLGMKNQGFAPD 508



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 171/378 (45%), Gaps = 63/378 (16%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++  L + A     H+G  LHA   K+           +       NSLLS Y K   + 
Sbjct: 310 VASALRVCASLADLHMGTQLHALIAKS----------GIHADLTASNSLLSMYAKAGLIN 359

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A   FD++ ++DT+S+  ++SG ++NG+ +  F  FK+ ++    + D A+   ++ AC
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKK-MQACNMEPDIATMVSLIPAC 418

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                    K  H  V + G   E ++ N+LI  Y KCG     R+VF +M  R+V++W 
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWN 478

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR-------QI 279
            +I+G   + L +E   LF+ M      P+ +T++  + ACS    + EG+         
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHK 538

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           +GIL +  ++  +C    ++D+ ++ G +++A+Q  +        SM             
Sbjct: 539 YGILPR--MEHYIC----MVDLLARGGLLDEAYQFIQ--------SMP------------ 572

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK--SDFTSNPFVNN 397
                         ++ D  +  A+LG   +  ++ LGKQ+  +I K   + T N  +  
Sbjct: 573 --------------LKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVL-- 616

Query: 398 GLINMYSKCGDLEDSIKV 415
            L N++S  G  +++ +V
Sbjct: 617 -LSNIFSAAGRFDEAAEV 633


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/547 (34%), Positives = 303/547 (55%), Gaps = 4/547 (0%)

Query: 91   IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            + N++L  Y K   +  A  LF  +P +D+VSWN ++ G   N E +      KR    G
Sbjct: 465  VANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYG 524

Query: 151  FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                D+ SF   ++AC     +   K IHC            VG++LI  Y K G   S 
Sbjct: 525  IAP-DEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESS 583

Query: 211  RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            RKV   +   +++   A+I+GLVQN   +E ++LF ++      P++ T+ S +  C+G 
Sbjct: 584  RKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGP 643

Query: 271  QALCEGRQIHGILWKLAL-QSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTV 328
             +   G+Q+H    K AL   D  +  +L+ +Y KC  +EDA ++  E  +  + V  T 
Sbjct: 644  VSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTA 703

Query: 329  ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
             + G+AQNG+ ++++ +F +M    +  D    ++VL       +L  GK+IH LIIKS 
Sbjct: 704  TISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSG 763

Query: 389  FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELY 447
            F S     + L++MYSKCGD+  S ++F  +  + N + WNSMI  FA++G   +AL L+
Sbjct: 764  FVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLF 823

Query: 448  EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            ++M+   ++P +VT L +L ACSH GL+++G     SM++V+ I PR +HYAC++D++GR
Sbjct: 824  QKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGR 883

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
             G L EA+  I+++P + D ++W   L AC +H D E GK AA+KL   +P   + Y+ +
Sbjct: 884  GGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFL 943

Query: 568  ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            +++++ +G W E   A + M+E GV K  G SWI +  + + FVV D  HP    I+ +L
Sbjct: 944  SSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGNKTNLFVVQDTHHPDTLGIYKML 1003

Query: 628  AELLRLM 634
             +L  +M
Sbjct: 1004 DDLTGMM 1010



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 235/462 (50%), Gaps = 15/462 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V + +++S      ++ +A  L   + M  TV+WN ++S + ++G     FG +K     
Sbjct: 262 VTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQ 321

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G     +++F  +LSA          + IH      G +  V VG++LI  Y K G  S 
Sbjct: 322 GLMPT-RSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISD 380

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +KVF     +N++ W A++ G VQN L EE +++F  M    +  +  T++S + AC  
Sbjct: 381 AKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACIN 440

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L +L  GRQ+H I  K ++ +DL + +A++DMYSK G+++ A  +F      D VS   +
Sbjct: 441 LDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNAL 500

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +VG A N  EEEA+ +  +M   GI  D    +  +       +   GKQIH   IK + 
Sbjct: 501 IVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNV 560

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN  V + LI++YSK GD+E S KV + +   + V  N++I    ++    +A+EL+++
Sbjct: 561 CSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQ 620

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMV 505
           +  +G +P++ TF S+L  C+  G V+  +       +VH  + ++    +  +  + +V
Sbjct: 621 VLKDGFKPSNFTFASILSGCT--GPVSSVIG-----KQVHSYTLKSALLNQDTSLGISLV 673

Query: 506 G---RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G   +  LL +A   +  +P   +++ W A +   + +G S+
Sbjct: 674 GIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSD 715



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 212/432 (49%), Gaps = 46/432 (10%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  ++ G    G  +H   +K+             ++      L+  Y KC ++++A 
Sbjct: 166 VLSACSRLGALEQGRQVHCDVLKS----------GFCSSAFCQAGLVDMYAKCVEVKDAR 215

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           ++FD +   DT+ W +M++G+ R G +      F R  ++G    DQ ++  I+S     
Sbjct: 216 RVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAP-DQVTYVTIIS----- 269

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
             +L S                             G  S  R +   +++ + + W AVI
Sbjct: 270 --TLASM----------------------------GRLSDARTLLKRIQMPSTVAWNAVI 299

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           S   Q+ L  E   L+  M    + P   T+ S + A + + A  EG+QIH    K  L 
Sbjct: 300 SSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLD 359

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           +++ + S+L+++Y K G + DA ++F+F+ E + V    +L GF QN  +EE +Q+F  M
Sbjct: 360 ANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYM 419

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            +A +E D     +VLG      SL +G+Q+H + IK+   ++ FV N +++MYSK G +
Sbjct: 420 RRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAI 479

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + +  +FS +  ++SVSWN++I   A +    +A+ + + MK  G+ P +V+F + ++AC
Sbjct: 480 DVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINAC 539

Query: 470 SHVGLVNKGMEF 481
           S++     G + 
Sbjct: 540 SNIRATETGKQI 551



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 192/439 (43%), Gaps = 55/439 (12%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           DQ    ++LSAC R       + +HC V   G+         L+  Y KC      R+VF
Sbjct: 159 DQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVF 218

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             +   + I W ++I+G  +   Y++ L LF +M      P+ +TY++            
Sbjct: 219 DGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVT------------ 266

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
                              I S L  M    G + DA  + +  +    V+   ++  ++
Sbjct: 267 -------------------IISTLASM----GRLSDARTLLKRIQMPSTVAWNAVISSYS 303

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           Q+G E E   L+  M + G+    +  +++L      T+   G+QIH+  +K    +N F
Sbjct: 304 QSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVF 363

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V + LIN+Y K G + D+ KVF     +N V WN+M+  F ++    + +++++ M+   
Sbjct: 364 VGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRAD 423

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRA 508
           +E  D TF+S+L AC ++  ++ G        +VH I+ +    A       ++DM  + 
Sbjct: 424 LEADDFTFVSVLGACINLDSLDIG-------RQVHCITIKNSMDADLFVANAMLDMYSKL 476

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL--FLAQPDSPAPYIL 566
           G +  A++    +P K D + W AL+   + + + E   Y  +++  +   PD  +    
Sbjct: 477 GAIDVAKALFSLIPGK-DSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVS---F 532

Query: 567 MANIYSCSG-RWKERAKAI 584
              I +CS  R  E  K I
Sbjct: 533 ATAINACSNIRATETGKQI 551



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 110/211 (52%), Gaps = 5/211 (2%)

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--ELDGVSMTVILVGFAQN 336
           +H  + +L L     +  AL+D+Y + G V  AW+           G + + +L   A++
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARS 137

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           G   + +  F ++ +  I   P+   ++ VL       +L  G+Q+H  ++KS F S+ F
Sbjct: 138 GSPRDVLDAFQRL-RCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAF 196

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
              GL++MY+KC +++D+ +VF  +A  +++ W SMIA + R G   +AL L+  M+  G
Sbjct: 197 CQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMG 256

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
             P  VT+++++   + +G ++     LK +
Sbjct: 257 SAPDQVTYVTIISTLASMGRLSDARTLLKRI 287


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 319/634 (50%), Gaps = 77/634 (12%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           V   SL++ Y    ++  AV  FD +P   RDTV  N ++S + R          F+  L
Sbjct: 89  VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLL 148

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVS----KMIHCLVYLCGYEEEVTVGNALITSYFK 203
             G  + D  SFT +LSA     L  +S      + C V   G    ++V NAL+  Y K
Sbjct: 149 ASGSLRPDDYSFTALLSAA--GHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMK 206

Query: 204 C----------------------------------GSSSSGRKVFGEMRVRNVITWTAVI 229
           C                                  G   + R VF E+ V+  + W A+I
Sbjct: 207 CEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMI 266

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL--- 286
           SG V + +  E  +LF +M L  +  +  T+ S + AC+       G+ +HG + +L   
Sbjct: 267 SGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPN 326

Query: 287 -ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN--------- 336
              ++ L + +AL+ +YSKCG++  A +IF+  +  D VS   IL G+ ++         
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 337 ----------------------GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
                                 GF E+A++LF +M    ++      +  +   G   SL
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GKQ+H  +++  F  +    N LI MY++CG ++++  +F  M   +SVSWN+MI+A 
Sbjct: 447 KHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISAL 506

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            +HG+G +ALEL++ M  EG+ P  ++FL++L AC+H GLV++G ++ +SM     I P 
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPG 566

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HY  ++D++GRAG + EAR  I+ MP +P   +W+A+L  C   GD E+G +AA++LF
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              P     YIL++N YS +GRW + A+  K M++ GV KE G SWIE   +VH FVV D
Sbjct: 627 KMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGD 686

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             HP+A  ++  L  +   M   GYVP+ + +LH
Sbjct: 687 TKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLH 720



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 38/310 (12%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI------ 91
           ++ LD +   + +LS  A  G F  G S+H    +    F  +    V NA V       
Sbjct: 289 RVPLDEFT-FTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCG 347

Query: 92  -------------------WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
                              WN++LS Y++   +  AV++F++MP ++ +SW  MVSG++ 
Sbjct: 348 NIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVH 407

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
            G  +     F R         D  ++   +SAC         K +H  +   G+E   +
Sbjct: 408 GGFSEDALKLFNRMRAEDVKPCDY-TYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNS 466

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
            GNALIT Y +CG+      +F  M   + ++W A+IS L Q+    E L+LF +M    
Sbjct: 467 AGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEG 526

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI------ESALMDMYSKCG 306
           I P+ +++L+ + AC+    + EG Q     +  +++ D  I       + L+D+  + G
Sbjct: 527 IYPDRISFLTVLTACNHSGLVDEGFQ-----YFESMKRDFGIIPGEDHYTRLIDLLGRAG 581

Query: 307 SVEDAWQIFE 316
            + +A  + +
Sbjct: 582 RIGEARDLIK 591


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/617 (31%), Positives = 323/617 (52%), Gaps = 8/617 (1%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           P  S S  +   + D  +LL ++A   +   G ++HA    T   + +  V  +      
Sbjct: 7   PFLSRSNFLASPHQDPIKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQL------ 60

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
            NSL++ Y+KCD++  A KLFD MP R+ VSW+ +++G+++NG     F  FK+ +    
Sbjct: 61  -NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDN 119

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              ++      +S+CD S++ +  K  H      G E    V NALI  Y KC    +  
Sbjct: 120 IFPNEYVIATAISSCD-SQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAI 178

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++   +   ++  +  V++GL+Q+    E + +   +    I  N+ TY++    C+ L+
Sbjct: 179 QILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLK 238

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +  G+Q+H  + K  +  D+ I S+++DMY KCG+V      F+  +  + VS T I+ 
Sbjct: 239 DITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIA 298

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            + QN F EEA+ LF KM    I  +   ++ +       ++L LG Q+H+   KS    
Sbjct: 299 AYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKG 358

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N  V N LI MY K GD+  +  VFS M   N ++WN++I   + HG G +AL ++++M 
Sbjct: 359 NVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHGLGKEALSMFQDMM 418

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G  P  VTF+ ++ AC+H+ LV++G  +   + +  RI P  EHY C+V ++ R+G L
Sbjct: 419 ATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEHYTCIVGLLSRSGRL 478

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA +F+    +  DV+ W+ LL AC +H   + G+  AE L   +P     YIL++N++
Sbjct: 479 DEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILLSNMH 538

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +   RW    +  K M+E  V KE G+SW+EI    H F  +D  HP+A+ I+  + +LL
Sbjct: 539 ARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENVKDLL 598

Query: 632 RLMIDEGYVPNKRFILH 648
             +   GYVP+   +LH
Sbjct: 599 SKIRPLGYVPDIDNVLH 615


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/597 (30%), Positives = 320/597 (53%), Gaps = 50/597 (8%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR--------------------NAVKL 111
           + F+  + +NVY       +WN ++S Y K    +                    +A +L
Sbjct: 155 RVFDTMEKKNVY-------LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFEL 207

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +  RD +SWN+M+SG++ NG  + G G +K+ + LG   +D A+   +L  C  S  
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGT 266

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             + K +H L     +E  +   N L+  Y KCG      +VF +M  RNV++WT++I+G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             ++   +  +KL  +M    +  + +   S + AC+   +L  G+ +H  +    ++S+
Sbjct: 327 YTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESN 386

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + +ALMDMY+KCGS+E A  +F      D +S   ++                     
Sbjct: 387 LFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI--------------------- 425

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ D   ++ VL      ++L  GK+IH  I+++ ++S+  V N L+++Y KCG L  
Sbjct: 426 GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MIA +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+ +G  F   M     I P+ EHYAC+VD++ R G L +A  F+E +P+ PD  +W 
Sbjct: 546 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWG 605

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
           ALL  C  + D E+ +  AE++F  +P++   Y+L+ANIY+ + +W+E  +  +++ + G
Sbjct: 606 ALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQG 665

Query: 592 VDKETGISWIEIEKQVHSFVV-DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + K  G SWIEI+ +V+ FV  ++  HP +  I  +L ++ R M +EG+ P  ++ L
Sbjct: 666 LRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYAL 722



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 198/441 (44%), Gaps = 76/441 (17%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +L+  ++  +L  C   +     K +H ++       +  +G  L++ Y  CG    GR+
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 213 VFGEMRVRN--------------------------------------------------- 221
           VF  M  +N                                                   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+W ++ISG V N L E GL ++ +M    I+ +  T +S ++ C+    L  G+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K + +  +   + L+DMYSKCG ++ A ++FE   E + VS T ++ G+ ++G  + 
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A++L  +M K G+++D   ++++L       SL  GK +H  I  ++  SN FV N L++
Sbjct: 336 AIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E +  VFS M  ++ +SWN+MI                       ++P   T
Sbjct: 396 MYAKCGSMEAANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRT 434

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIER 520
              +L AC+ +  + +G E    +      S R  H A  +VD+  + G+L  AR   + 
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDM 492

Query: 521 MPVKPDVLVWQALLGACSIHG 541
           +P K D++ W  ++    +HG
Sbjct: 493 IPSK-DLVSWTVMIAGYGMHG 512



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 110/266 (41%), Gaps = 55/266 (20%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++ F Q G  E AM+L     K+  E++     +VL +     S   GK++HS+I  +  
Sbjct: 73  ILHFCQLGDLENAMELICMCQKS--ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSV 130

Query: 390 TSNPFVNNGLINMYSKCGDL---------------------------------------- 409
             +  +   L++ Y+ CGDL                                        
Sbjct: 131 GVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI 190

Query: 410 -----------EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
                      E + ++F ++  R+ +SWNSMI+ +  +G   + L +Y++M   G++  
Sbjct: 191 MVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVD 250

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             T +S+L  C++ G ++ G + + S+        R      ++DM  + G L  A    
Sbjct: 251 LATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           E+M  + +V+ W +++   +  G S+
Sbjct: 310 EKMGER-NVVSWTSMIAGYTRDGRSD 334


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/604 (31%), Positives = 322/604 (53%), Gaps = 12/604 (1%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LL    + G    G  LHA  + +              +T + N L++ Y  C  
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGA---------AAASTFLANHLITMYSHCAD 71

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +A++LF  MP R+ VSW T+VSG  +N         F      G     + + +    
Sbjct: 72  LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPT-RFALSSAAR 130

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           A       L    +HC+    G++ E+ V + L   Y KCG  S   +VF +M  ++ + 
Sbjct: 131 AAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVA 190

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           WTA+I G  +N   E  +  F  M   GL+  +   + S + A  GL+     + IH  +
Sbjct: 191 WTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCV 250

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-LDGVSMTVILVGFAQNGFEEEA 342
            K   + ++ + +AL+DMY+K   VE A ++ +      + VS T ++ G+ +    EEA
Sbjct: 251 TKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEA 310

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + ++V++ + G+E +    S+++    +   L  G Q+H+ +IK+D   + FV + L++M
Sbjct: 311 LVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDM 370

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KCG +  S+++F+ +  R  ++WN++I  FA+HG+G +A++ ++ M   G+ P  + F
Sbjct: 371 YGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAF 430

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +SLL ACSH GLV++G+++  SM E H I P+ EHY+C++D  GRAG L EA  FI  MP
Sbjct: 431 VSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMP 490

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           +KP+   W +LLGAC + G  E+G+ AA+ L   +P +   ++ ++ IY+  G+W++   
Sbjct: 491 IKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKA 550

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K M++  + K  G SW++  K+ H F  +D  HPQ   I+  L EL   + +EGY+P+
Sbjct: 551 VRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPD 610

Query: 643 KRFI 646
             F+
Sbjct: 611 TSFL 614


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/539 (34%), Positives = 300/539 (55%), Gaps = 6/539 (1%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD    R+T  WNTM+ G+++N         F + +E   + LD  +F   L+A  
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAIS 333

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           + +   + + +H  +       +V + NA+I  Y +CGS  +  KVF  M  R+V+TW  
Sbjct: 334 QLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           ++S  VQN L +EGL L   M       +S+T  + +   S L++   G+Q H  L +  
Sbjct: 394 MVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG 453

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT--VILVGFAQNGFEEEAMQL 345
           +Q +  ++S L+DMY+K G +  A Q+FE   + D    T   ++ G+ QNG  EE   +
Sbjct: 454 IQFE-GMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAV 512

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F KM++  +  +   ++++L       ++GLGKQIH   I+     N FV   L++MYSK
Sbjct: 513 FRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSK 572

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G +  +  VF+    +NSV++ +MI+++ +HG G +AL L+  M   G++P  VTF+++
Sbjct: 573 SGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAI 632

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L ACS+ GLV++G+   +SM   ++I P AEHY CV DM+GR G ++EA  F++ +  + 
Sbjct: 633 LSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEG 692

Query: 526 DVL-VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAK 582
           +   +W +LLGAC IHG+ E+GK  A KL   +  S     ++L++NIY+  G W    +
Sbjct: 693 NTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDR 752

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
             K M++ G+ KE G SW+E+   V+ F+  D  HPQ   I+ +L +L   M D GY P
Sbjct: 753 VRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKP 811



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 156/608 (25%), Positives = 279/608 (45%), Gaps = 74/608 (12%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            D+Y   S  L   A+     LG +LH   +++          +  ++ +++NSLL+ Y 
Sbjct: 102 FDSYT-FSSTLKACAQARSLKLGKALHCHVLRS----------HFGSSRIVYNSLLNMYS 150

Query: 101 ----------------KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
                            CD +R   ++FD M  R+ V+WNTM+S +++       F  F+
Sbjct: 151 TCLTEVPYLGTAYDFNNCDLVR---RVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFR 207

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYF 202
             + +G  +    SF  +  A  R      + +++ LV   G  + ++  V ++ I  Y 
Sbjct: 208 TMMRMGI-RPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYA 266

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYL 261
           + G     R++F     RN   W  +I G VQN    E + LFV+ M       + +T+L
Sbjct: 267 ELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFL 326

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ A S LQ L  GRQ+H  + K +    + I +A++ MYS+CGS+  ++++F    E 
Sbjct: 327 SALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D V+   ++  F QNG ++E + L   M K G  +D   ++A+L +     S  +GKQ H
Sbjct: 387 DVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAH 446

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN 439
           + +I+        +++ LI+MY+K G +  + ++F + +   R+  +WN+MIA + ++G 
Sbjct: 447 AYLIRHGIQFEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGL 505

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME------------------- 480
             +   ++ +M  + V P  VT  S+L AC+ +G +  G +                   
Sbjct: 506 SEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTA 565

Query: 481 ----FLKSMTEVHRISPRAE-------HYACVVDMVGRAGLLIEARSFIERM---PVKPD 526
               + KS    +  +  AE        Y  ++   G+ G+   A S    M    +KPD
Sbjct: 566 LLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPD 625

Query: 527 VLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            + + A+L ACS  G  + G     + E+ +  QP S   Y  +A++    GR  E  + 
Sbjct: 626 SVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQP-SAEHYCCVADMLGRVGRVVEAYEF 684

Query: 584 IKRMKEMG 591
           +K + E G
Sbjct: 685 VKGLGEEG 692



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 234/510 (45%), Gaps = 44/510 (8%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           S LS   +      A+ LFD +P   TV WNT++ GF+ N        F+ R       +
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC--------- 204
            D  +F+  L AC ++    + K +HC V    +     V N+L+  Y  C         
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGT 161

Query: 205 ----GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
                +    R+VF  MR RNV+ W  +IS  V+ +   E  K+F  M    I P  +++
Sbjct: 162 AYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSF 221

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           ++   A   +        ++G++ KL      D  + S+ + MY++ G V+ A +IF+  
Sbjct: 222 VNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCC 281

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGL 376
            E +      ++ G+ QN    EA+ LFV+++++   +  D   +SA+  +  +   L L
Sbjct: 282 LERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQW-LEL 340

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           G+Q+H+ I+KS       + N +I MYS+CG +  S KVFS M  R+ V+WN+M++AF +
Sbjct: 341 GRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSM 485
           +G   + L L   M+ +G     VT  +LL   S           H  L+  G++F + M
Sbjct: 401 NGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQF-EGM 459

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHGDSE 544
                          ++DM  ++GL+  A+   E+      D   W A++   + +G SE
Sbjct: 460 DSY------------LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSE 507

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
            G +A  +  + Q   P    L + + +C+
Sbjct: 508 EG-FAVFRKMIEQNVRPNAVTLASILPACN 536



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 169/332 (50%), Gaps = 15/332 (4%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           + + VLD+   +S L +IS  +    LG  LHA  +K+                VI N++
Sbjct: 315 SEQFVLDDVTFLSALTAISQLQ-WLELGRQLHAYILKSSTILQ----------VVILNAI 363

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           +  Y +C  +  + K+F +M  RD V+WNTMVS F++NG  D G        + GF  +D
Sbjct: 364 IVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGF-MVD 422

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             + T +LS         + K  H  +   G + E  + + LI  Y K G  ++ +++F 
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFE-GMDSYLIDMYAKSGLITTAQQLFE 481

Query: 216 EMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           +     R+  TW A+I+G  QN L EEG  +F KM    + PN++T  S + AC+ +  +
Sbjct: 482 KNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+QIHG   +  L  ++ + +AL+DMYSK G++  A  +F    E + V+ T ++  +
Sbjct: 542 GLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSY 601

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            Q+G  E A+ LF  M+ +GI+ D     A+L
Sbjct: 602 GQHGMGERALSLFHAMLGSGIKPDSVTFVAIL 633


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 265/444 (59%), Gaps = 2/444 (0%)

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S  S RK+F  M  +++++W  +I+G  +N LY E L +  +M    + P+S T LSSV+
Sbjct: 249 SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFT-LSSVL 307

Query: 266 ACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
                   + +G++IHG   +  L +++ + S+L+DMY+KC  V D++++F    E DG+
Sbjct: 308 PLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGI 367

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   I+ G  QNG  +E ++ F +M+ A I+      S+++      T+L LGKQ+H  I
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 427

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            ++ F  N F+ + L++MY+KCG++  + ++F RM  R+ VSW +MI   A HG+   A+
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAI 487

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           EL+E+MK EG+EP  V F+++L ACSH GLV++  ++  SMT    I+P  EHYA V D+
Sbjct: 488 ELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDL 547

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRAG L EA  FI  MP+ P   VW  LL AC +H + +M +  A ++    P +   Y
Sbjct: 548 LGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAY 607

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           IL+ANIYS + RWKE AK    ++  G+ K    SWIE+  +V++F+  D+ HP  + I 
Sbjct: 608 ILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIR 667

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             +  L+ LM  EGYVP+   + H
Sbjct: 668 EAMEVLMELMEKEGYVPDTSEVHH 691



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 30/358 (8%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           +S  +  D +R   K+F+ MP +D VSWNT+++G  RNG +       +   E+G   L 
Sbjct: 244 ISHSMSVDSVR---KIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVR---EMGGANLK 297

Query: 156 QASFTI------ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             SFT+      I    D S+     K IH      G + EV V ++LI  Y KC     
Sbjct: 298 PDSFTLSSVLPLIAENVDISK----GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVD 353

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF  +  R+ I+W ++I+G VQN L++EGLK F +M +  I P S ++ S + AC+ 
Sbjct: 354 SYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAH 413

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G+Q+HG + +     ++ I S+L+DMY+KCG++  A QIF+     D VS T +
Sbjct: 414 LTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAM 473

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL----GKQIHSLII 385
           ++G A +G   +A++LF +M   GIE  PN V A + V    +  GL     K  +S+ +
Sbjct: 474 IMGCALHGHALDAIELFEQMKTEGIE--PNYV-AFMAVLTACSHAGLVDEAWKYFNSMTL 530

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARHGN 439
             DF   P V +   + ++  + G LE++      M   P  SV W ++++A   H N
Sbjct: 531 --DFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSV-WATLLSACRVHKN 585



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 210/453 (46%), Gaps = 27/453 (5%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y   + + ++++LF+ +     ++W +++  +  +G      G F   L  G Y  D  
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYP-DHN 109

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG-SSSSGRKVFG- 215
            F  +L AC       + + +H  +   G + ++  GNAL+  Y K      SGR+  G 
Sbjct: 110 VFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGA 169

Query: 216 -----EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
                EM  R     TA +  LV NQ    G K+           + +   +  ++C   
Sbjct: 170 SQVLDEMTERTRSVRTASV--LVGNQ----GRKV-----------SDIEAFNYDVSCRSR 212

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +   +  +I         + + C     +   S   SV+   +IFE   E D VS   I+
Sbjct: 213 EFEAQVLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTII 272

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G A+NG   E + +  +M  A ++ D   +S+VL +   +  +  GK+IH   I+    
Sbjct: 273 AGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLD 332

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +  +V + LI+MY+KC  + DS +VF+ +  R+ +SWNS+IA   ++G   + L+ + +M
Sbjct: 333 AEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQM 392

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            +  ++P   +F S++ AC+H+  ++ G +    +T  +         + +VDM  + G 
Sbjct: 393 LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGN 451

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           +  AR   +RM ++ D++ W A++  C++HG +
Sbjct: 452 IRTARQIFDRMRLR-DMVSWTAMIMGCALHGHA 483



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y KC ++ ++ ++F  +  RD +SWN++++G ++NG FD G  FF++ L + 
Sbjct: 337 VASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQML-MA 395

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +    SF+ I+ AC       + K +H  +   G++E + + ++L+  Y KCG+  + 
Sbjct: 396 KIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 455

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F  MR+R++++WTA+I G   +    + ++LF +M    I PN + +++ + ACS  
Sbjct: 456 RQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHA 515

Query: 271 QALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
             + E  +  + +     +   +   +A+ D+  + G +E+A+
Sbjct: 516 GLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAY 558



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 160/385 (41%), Gaps = 57/385 (14%)

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++F  +     + W +VI     + L  + L  F+ M    + P+   + S + AC+ L 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-------AWQIF-EFAEELDG 323
            L  G  +HG + ++ L  DL   +ALM+MYSK   ++        A Q+  E  E    
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRS 182

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V    +LVG       +                        +  F  D S    ++  + 
Sbjct: 183 VRTASVLVGNQGRKVSD------------------------IEAFNYDVSC-RSREFEAQ 217

Query: 384 IIKSDFT-SNPFVNNGLINMYSKCGDLEDSI------KVFSRMAPRNSVSWNSMIAAFAR 436
           +++ D+   + +      N+  +  D+  S+      K+F  M  ++ VSWN++IA  AR
Sbjct: 218 VLEIDYKPRSEYREMEACNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNAR 277

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-- 494
           +G   + L +  EM    ++P   T  S+L   +    ++KG        E+H  S R  
Sbjct: 278 NGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKG-------KEIHGCSIRQG 330

Query: 495 --AEHY--ACVVDMVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
             AE Y  + ++DM  +   ++++ R F   +  + D + W +++  C  +G  + G   
Sbjct: 331 LDAEVYVASSLIDMYAKCTRVVDSYRVFT--LLTERDGISWNSIIAGCVQNGLFDEGLKF 388

Query: 550 AEKLFLAQPDSPAPYILMANIYSCS 574
             ++ +A+   P  Y   + + +C+
Sbjct: 389 FRQMLMAKI-KPKSYSFSSIMPACA 412



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG  LH     T   FD +N++       I +SL+  Y KC  +R A ++FD M +RD
Sbjct: 417 LHLGKQLHGYI--TRNGFD-ENIF-------IASSLVDMYAKCGNIRTARQIFDRMRLRD 466

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
            VSW  M+ G   +G        F++    G  + +  +F  +L+AC  + L
Sbjct: 467 MVSWTAMIMGCALHGHALDAIELFEQMKTEGI-EPNYVAFMAVLTACSHAGL 517


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 299/562 (53%), Gaps = 4/562 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L+  Y++C +   A  +F  MPMRD V+WN M++G+  +G +           + G
Sbjct: 137 VSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHG 196

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIH--CL-VYLCGYEEEVTVGNALITSYFKCGSS 207
             + + ++   +L    +         IH  CL   L   EE+V +G AL+  Y KC   
Sbjct: 197 GLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQL 256

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
               +VF  M VRN +TW+A+I G V      E   LF  M + GL   ++ +  S++  
Sbjct: 257 VYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRV 316

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L  L  G Q+H ++ K  + +DL   ++L+ MY+K G + +A   F+     D +S 
Sbjct: 317 CASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISY 376

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +L G  QNG  EEA  +F KM    +E D   + +++       +L  GK  H  +I 
Sbjct: 377 GALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVII 436

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                   + N LI+MY+KCG ++ S +VF +M  R+ VSWN+MIA +  HG G +A  L
Sbjct: 437 RGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTL 496

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  MK +G  P DVTF+ L+ ACSH GLV +G  +  +MT  + I PR EHY C+VD++ 
Sbjct: 497 FLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLA 556

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R GLL EA  FI+ MP+K DV VW ALLGAC IH + ++GK  +  +    P+    ++L
Sbjct: 557 RGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVL 616

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NI+S +GR+ E A+     K  G  K  G SWIEI   +H+FV  D+ HP +  I+  
Sbjct: 617 LSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHE 676

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           L  ++  +   GY  +  F+L 
Sbjct: 677 LDNIMVDIKKLGYQADTSFVLQ 698



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 245/522 (46%), Gaps = 16/522 (3%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           HL P   A+  +   P      Y V +    W   L  ++   Q+  A ++FD +P  D 
Sbjct: 7   HLRPFSAATAARLHRPPSGSISYEVKDKKQ-WQQELEQHISRGQLALARQVFDRIPAPDA 65

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
            ++N ++  +   G F      ++  L       ++ +F  +L AC         + IH 
Sbjct: 66  RAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAP-NKYTFPFVLKACSALVDLRAGRTIHA 124

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
                G   ++ V  ALI  Y +C      R VF +M +R+V+ W A+++G   + +Y  
Sbjct: 125 HAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHH 184

Query: 241 GLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIES 296
            +   + M   G + PN+ T +S +   +   AL +G  IH    +  L+ +   + I +
Sbjct: 185 AIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGT 244

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI-E 355
           AL+DMY+KC  +  A ++F      + V+ + ++ GF       EA  LF  M+  G+  
Sbjct: 245 ALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCF 304

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           +    V++ L V      L +G Q+H+LI KS   ++   +N L++MY+K G + ++   
Sbjct: 305 LSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMF 364

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  +A ++++S+ ++++   ++G   +A  ++++M+   +EP   T +SL+ ACSH+  +
Sbjct: 365 FDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAAL 424

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G     S+  +  ++        ++DM  + G +  +R   ++MP + DV+ W  ++ 
Sbjct: 425 QHGKCSHGSVI-IRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIA 482

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYSCS 574
              IHG   +GK  A  LFL   +   +P     +  I +CS
Sbjct: 483 GYGIHG---LGK-EATTLFLGMKNQGFAPDDVTFICLIAACS 520



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 11/317 (3%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +  LL + A+ G    G S+HA  ++     + + V       +I  +LL  Y KC
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQV-------LIGTALLDMYAKC 253

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            Q+  A ++F  MP+R+ V+W+ ++ GF+        F  FK  L  G   L   S    
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L  C       +   +H L+   G   ++T  N+L++ Y K G  +     F E+ V++ 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG- 281
           I++ A++SG VQN   EE   +F KM    + P+  T +S + ACS L AL  G+  HG 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 282 -ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            I+  LAL++ +C  ++L+DMY+KCG ++ + Q+F+     D VS   ++ G+  +G  +
Sbjct: 434 VIIRGLALETSIC--NSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGK 491

Query: 341 EAMQLFVKMVKAGIEID 357
           EA  LF+ M   G   D
Sbjct: 492 EATTLFLGMKNQGFAPD 508



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 171/378 (45%), Gaps = 63/378 (16%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++  L + A     H+G  LHA   K+           +       NSLLS Y K   + 
Sbjct: 310 VASALRVCASLADLHMGTQLHALIAKS----------GIHADLTASNSLLSMYAKAGLIN 359

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A   FD++ ++DT+S+  ++SG ++NG+ +  F  FK+ ++    + D A+   ++ AC
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKK-MQACNMEPDIATMVSLIPAC 418

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                    K  H  V + G   E ++ N+LI  Y KCG     R+VF +M  R+V++W 
Sbjct: 419 SHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWN 478

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR-------QI 279
            +I+G   + L +E   LF+ M      P+ +T++  + ACS    + EG+         
Sbjct: 479 TMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHK 538

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           +GIL +  ++  +C    ++D+ ++ G +++A+Q  +        SM             
Sbjct: 539 YGILPR--MEHYIC----MVDLLARGGLLDEAYQFIQ--------SMP------------ 572

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK--SDFTSNPFVNN 397
                         ++ D  +  A+LG   +  ++ LGKQ+  +I K   + T N  +  
Sbjct: 573 --------------LKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVL-- 616

Query: 398 GLINMYSKCGDLEDSIKV 415
            L N++S  G  +++ +V
Sbjct: 617 -LSNIFSAAGRFDEAAEV 633


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 288/487 (59%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L +  R+  ++     H  +   G   +    N L+  Y KCG   S RK+F EM VR+
Sbjct: 53  LLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRS 112

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  ++    QN   E+ L LF++M    I+ +  T  S V AC+    + E +Q+HG
Sbjct: 113 LVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHG 172

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
              K AL S++ + +AL+D+Y+KCG V+DA  +FE   E   V+ + ++ G+ QN   EE
Sbjct: 173 FALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEE 232

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ LF +    G+E +   +S+ L       +L  GKQ+ +++ K+   SN FV + LI+
Sbjct: 233 ALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLID 292

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E++  VFS +  +N V WN+M++ F+RH    +A+  +E+M+  G+ P ++T
Sbjct: 293 MYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEIT 352

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           ++S+L ACSH+GLV KG ++   M  VH +SP   HY+C+VD++GRAGLL EA+  I+RM
Sbjct: 353 YISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRM 412

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P      +W +LL +C I+ + E  + AA+ LF  +P +   ++L++NIY+ + RW+E A
Sbjct: 413 PFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVA 472

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +A   +KE    KE G SWIEI+ +VHSF+V ++ HP+   I+  L +L+  M   GY  
Sbjct: 473 RARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKA 532

Query: 642 NKRFILH 648
                LH
Sbjct: 533 KTEHDLH 539



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/395 (30%), Positives = 203/395 (51%), Gaps = 23/395 (5%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           ++  LL  SA+      G + HA  I+     D          T+  N L++ Y KC  +
Sbjct: 49  ELQHLLQSSARNRAAIEGMACHAQIIRVGLRAD----------TITSNMLMNMYSKCGLV 98

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--IL 163
            +A KLFD+MP+R  VSWNTMV    +NG+ +     F +  + G   +  + FT+  ++
Sbjct: 99  ESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEG---ISCSEFTVSSVV 155

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC         K +H        +  V VG AL+  Y KCG       VF  M  R+ +
Sbjct: 156 CACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDV 215

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           TW+++++G VQN+LYEE L LF +     +  N  T  S++ AC+   AL EG+Q+  +L
Sbjct: 216 TWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVL 275

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K  + S++ + S+L+DMY+KCG +E+A+ +F   EE + V    +L GF+++    EAM
Sbjct: 276 CKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAM 335

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK-SDFTSNPFVNNGL 399
             F KM + G  I PN ++ +  V    + LGL   G++   L+I+  + + N    + +
Sbjct: 336 IYFEKMQQMG--ICPNEITYI-SVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCM 392

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAA 433
           +++  + G L ++  +  RM    + S W S++A+
Sbjct: 393 VDILGRAGLLHEAKDLIDRMPFDATASMWGSLLAS 427


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 333/618 (53%), Gaps = 56/618 (9%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNA---TVIWN 93
           S+L  +  +D +R +     E    L  ++   ++K     + + +++  +A    V W 
Sbjct: 9   SRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWT 68

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           ++++ Y+K +Q++ A +LF +MP+R+ VSWNTMV G+ RNG        F+R        
Sbjct: 69  AMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM------- 121

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
                                             E  V   N +IT+  +CG     +++
Sbjct: 122 ---------------------------------PERNVVSWNTIITALVQCGRIEDAQRL 148

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F +M+ R+V++WT +++GL +N   E+   LF +M +     N +++ + +   +  + L
Sbjct: 149 FDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPV----RNVVSWNAMITGYAQNRRL 204

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            E  Q    L++   + D+   + ++  + + G +  A ++F   +E + ++ T ++ G+
Sbjct: 205 DEALQ----LFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGY 260

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            Q+G  EEA+++F+KM+ A  E+ PN  +   VLG       L  G+QIH +I K+ F  
Sbjct: 261 VQHGLSEEALRVFIKML-ATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQD 319

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           +  V + LINMYSKCG+L  + K+F    ++ R+ +SWN MIAA+A HG G +A+ L+ E
Sbjct: 320 STCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNE 379

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  GV   DVTF+ LL ACSH GLV +G ++   + +   I  R +HYAC+VD+ GRAG
Sbjct: 380 MQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAG 439

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA + IE +  +  + VW ALL  C++HG++++GK  AEK+   +P +   Y L++N
Sbjct: 440 RLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSN 499

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+  G+WKE A    RMK+MG+ K+ G SWIE+   V  FVV DK H Q + +  +L +
Sbjct: 500 MYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVGDKPHSQYEPLGHLLHD 559

Query: 630 LLRLMIDEGYVPNKRFIL 647
           L   M   G +P+   ++
Sbjct: 560 LHTKMKKAGDMPDDDLLV 577



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 176/381 (46%), Gaps = 51/381 (13%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK------- 247
           N  I+   + G     RKVF EM  R++  WT +I+G ++  +  E  KLF +       
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 248 -----MHLGLINPNS------LTYLSSVMACSGLQALCEGRQIHGI------LWKLALQS 290
                M  G I  N       L Y   +        + +G   +G+      L++   + 
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           ++   + ++    +CG +EDA ++F+  ++ D VS T ++ G A+NG  E+A  LF +M 
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184

Query: 351 KAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
                   N+VS  A++  +  +  L    Q+   + + D  S     N +I  + + G+
Sbjct: 185 VR------NVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPS----WNTMITGFIQNGE 234

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLH 467
           L  + K+F  M  +N ++W +M+  + +HG   +AL ++ +M     ++P   TF+++L 
Sbjct: 235 LNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLG 294

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACVV----DMVGRAGLLIEARS-FIER 520
           ACS +  + +G        ++H++  +   +   CVV    +M  + G L  AR  F + 
Sbjct: 295 ACSDLAGLTEGQ-------QIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDG 347

Query: 521 MPVKPDVLVWQALLGACSIHG 541
           +  + D++ W  ++ A + HG
Sbjct: 348 LLSQRDLISWNGMIAAYAHHG 368


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 298/547 (54%), Gaps = 15/547 (2%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   ++++   D            + N+LL+ Y+   ++  A  +FD M  RD +
Sbjct: 135 LGLVIHGRILRSWFGMDK----------YVQNALLAMYMNFGRVEMARNVFDVMKNRDVI 184

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWNTM+SG+ RNG  +     F   +  G    D A+   +L  C   +   + + +H L
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNEGV-DPDHATIVSMLPVCGHLKGLEMGRNVHKL 243

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V      +++ V NAL+  Y KCG     R VFG M  R+VITWT +I+G +++   E  
Sbjct: 244 VEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENA 303

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L+L   M    + PN++T  S V AC     L +G+ +HG   +  + SD+ IE++L+ M
Sbjct: 304 LELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISM 363

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KC  ++  +++F  A        + I+ G  QN    +A+ LF +M +  +E +   +
Sbjct: 364 YAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATL 423

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS---- 417
           +++L  +     L     IH  + K+ F S+     GL+++YSKCG LE + K+F+    
Sbjct: 424 NSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           +   ++ V W ++I+ +  HG+G  AL+++ EM   GV P ++TF S L+ACSH GLV +
Sbjct: 484 KHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEE 543

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G+     M E ++   R+ HY C+VD++GRAG L EA + I  +P +P   +W ALL AC
Sbjct: 544 GLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAAC 603

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
             H + ++G+ AA KLF  +P++   Y+L+ANIY+  GRWK+  K    M+ +G+ K+ G
Sbjct: 604 VTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLRKKPG 663

Query: 598 ISWIEIE 604
            S IEI 
Sbjct: 664 HSTIEIR 670



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 120/456 (26%), Positives = 224/456 (49%), Gaps = 5/456 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L   Y  C  +  A KLFD+MP    +S+N ++  ++R+G +      F R +  G
Sbjct: 51  ILSTLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEG 110

Query: 151 FYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + D  ++  +  A    +   +  +IH  +    +  +  V NAL+  Y   G    
Sbjct: 111 IKCVPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEM 170

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF  M+ R+VI+W  +ISG  +N    + L +F  M    ++P+  T +S +  C  
Sbjct: 171 ARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGH 230

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ L  GR +H ++ +  L   + +++AL++MY KCG +++A  +F   E  D ++ T +
Sbjct: 231 LKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCM 290

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ ++G  E A++L   M   G+  +   +++++   G    L  GK +H   I+   
Sbjct: 291 INGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKV 350

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  +   LI+MY+KC  ++   +VFS  +  ++  W+++IA   ++     AL+L++ 
Sbjct: 351 CSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKR 410

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ E VEP   T  SLL A + +  + + M     +T+   +S   +    +V +  + G
Sbjct: 411 MRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSS-LDAATGLVHVYSKCG 469

Query: 510 LLIEARSF---IERMPVKPDVLVWQALLGACSIHGD 542
            L  A      I+      DV++W AL+    +HGD
Sbjct: 470 TLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGD 505



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 20/283 (7%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N V I+ L+S        + G  LH   I+            V +  +I  SL+S Y
Sbjct: 315 VRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQ----------KVCSDIIIETSLISMY 364

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +    ++F       T  W+ +++G ++N         FKR +     + + A+ 
Sbjct: 365 AKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKR-MRREDVEPNIATL 423

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG---- 215
             +L A         +  IHC +   G+   +     L+  Y KCG+  S  K+F     
Sbjct: 424 NSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           + + ++V+ W A+ISG   +      L++F++M    + PN +T+ S++ ACS    + E
Sbjct: 484 KHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEE 543

Query: 276 GRQIHGIL---WKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           G  +   +   +K   +S+    + ++D+  + G +++A+ + 
Sbjct: 544 GLTLFSFMLEHYKTLARSNH--YTCIVDLLGRAGRLDEAYNLI 584


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 314/599 (52%), Gaps = 39/599 (6%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           A+ G   LG  +H   IK FE  ++           I N+LL+ Y     + ++ +LF+ 
Sbjct: 273 AELGSLKLGKQIHQLAIK-FEFVED---------LYILNALLNMYSNNGSLESSHQLFES 322

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           +P RD   WN+M+S +   G  +     F R    G  + D+ +  I+LS C+     L+
Sbjct: 323 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKK-DERTVVIMLSMCEELASGLL 381

Query: 175 S-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             K +H  V   G   + ++GNAL++ Y +     S +K+F  M+  ++I+W  +I  L 
Sbjct: 382 KGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALA 441

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
           +N L  +  +LF +M    I PNS T +S + AC  +  L  GR IHG + K +++ +  
Sbjct: 442 RNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQP 501

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + +AL DMY  CG    A  +FE   + D +S   ++                       
Sbjct: 502 LRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIX---------------------- 539

Query: 354 IEIDPNMVSA--VLGVFGVDTSLGLGKQIHSLIIKSDFTS--NPFVNNGLINMYSKCGDL 409
            + +PN V+   VL  F    +L  G+ +H+ + +  F+   +  + N  I MY++CG L
Sbjct: 540 -KAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSL 598

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + +  +F  +  RN +SWN+MIA +  +G G  A+  + +M  +G  P  VTF+S+L AC
Sbjct: 599 QSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSAC 658

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           SH G +  G++   SM +   ++P   HY+C+VD++ R G + EAR FI+ MP++PD  V
Sbjct: 659 SHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASV 718

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W+ALL +C  + D++  K   EKL   +P +   Y+L++N+Y+ +G W E  +    +KE
Sbjct: 719 WRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKE 778

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G+ K  GISWI ++ QVH F   D+ HPQ+D I+  L+ LL  M + GY P+ R++ H
Sbjct: 779 KGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGYDPDLRWVFH 837



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/515 (29%), Positives = 249/515 (48%), Gaps = 28/515 (5%)

Query: 28  IIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPN 87
           I+   T   S  VL N   +  +L   A +     G S+H S   T          ++ +
Sbjct: 44  ILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGT----------DLMD 93

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
              +  +++ FY KC  + +A  +FD M  RD V WN MV G++       G+G ++ ++
Sbjct: 94  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYV-------GWGCYEEAM 146

Query: 148 ----ELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITS 200
               E+G   L   S T++  L AC+ +    + + +H      G ++    V  ALI  
Sbjct: 147 LLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGF 206

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y +         +F  M VRN+++W A+ISG      Y + L+LFV+M +  +  + +T 
Sbjct: 207 YLRFDMRVLPL-LFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 265

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           L +V AC+ L +L  G+QIH +  K     DL I +AL++MYS  GS+E + Q+FE    
Sbjct: 266 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 325

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF-GVDTSLGLGKQ 379
            D      ++  +A  G  EEAM LF++M   G++ D   V  +L +   + + L  GK 
Sbjct: 326 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 385

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+ +IKS    +  + N L++MY++   +E   K+F RM   + +SWN+MI A AR+  
Sbjct: 386 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTL 445

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A EL+E M+   ++P   T +S+L AC  V  ++ G   +      H I        
Sbjct: 446 RAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRS-IHGYVMKHSIEINQPLRT 504

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            + DM    G    AR   E  P + D++ W A++
Sbjct: 505 ALADMYMNCGDEATARDLFEGCPDR-DLISWNAMI 538



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 46/385 (11%)

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           ++++++   W +VI      +  +  L  + +M    + PN+ T    + AC+   A+  
Sbjct: 19  KIQIKDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVER 78

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           G+ IH  +    L  D+ + +A++D Y KCG VEDA  +F+   + D V    ++ G+  
Sbjct: 79  GKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVG 138

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPN---MVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FTS 391
            G  EEAM L  +M +  +   PN   MV+ +L   G  + L LG+ +H   +++  F S
Sbjct: 139 WGCYEEAMLLVREMGRENLR--PNSRTMVALLLACEGA-SELRLGRGVHGYCLRNGMFDS 195

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           NP V   LI  Y +  D+     +F  M  RN VSWN+MI+ +   G+ FKALEL+ +M 
Sbjct: 196 NPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML 254

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           ++ V+   VT L  + AC+ +G +  G        ++H+++ + E               
Sbjct: 255 VDEVKFDCVTMLVAVQACAELGSLKLG-------KQIHQLAIKFE--------------- 292

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANI 570
                F+E      D+ +  ALL   S +G  E    ++ +LF + P+  AP +  M + 
Sbjct: 293 -----FVE------DLYILNALLNMYSNNGSLE----SSHQLFESVPNRDAPLWNSMISA 337

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKE 595
           Y+  G  +E      RM+  GV K+
Sbjct: 338 YAAFGCHEEAMDLFIRMQSEGVKKD 362


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 313/563 (55%), Gaps = 25/563 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIK---TFEPFDNQNVYNVPNATVIWNSLLSFYLKCD 103
           +++ +SI  K      G  +H++ IK   +  P+             I+ +L+  Y KC 
Sbjct: 71  LTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPY-------------IFTALVDMYGKCW 117

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII- 162
            + +A K+FD+M     V+WN++V+G+L+ G   M    F   L+ G   ++   F++  
Sbjct: 118 SISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKG---IEPTPFSLSG 174

Query: 163 -LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
            L  C + +   +   +H +     +   V VG  LI  Y KC +    R+VF  M  +N
Sbjct: 175 GLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKN 234

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           V TWT++ISG  +NQL  E + L  +M HL L  PN +TY S + + S  +   + +QIH
Sbjct: 235 VFTWTSMISGYARNQLPHEAMXLMREMLHLNL-EPNGMTYNSLLSSFSCPRHFDKCKQIH 293

Query: 281 GILWKLALQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
             +     +S+  I   L+  YS+C GS+ED  ++       D +S   ++ GF   G  
Sbjct: 294 CRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIG 353

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++ F++M +   ++D    +++    G+ ++L  GKQIH L+ K+ +T N  V NGL
Sbjct: 354 EEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGL 413

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY++ G + DS  VFS M   + +SWNS+++  A HG G +A++L+E+M+   ++P +
Sbjct: 414 VSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDN 473

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYACVVDMVGRAGLLIEARSFI 518
            +FL++L ACSHVGL++KG+E+ K M     +  P+ EHYA +VD+ GRAG L EA +FI
Sbjct: 474 TSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFI 533

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E +P++P + +++ALL AC IHG+ ++    A+KL    P  PA YI+++N     G W 
Sbjct: 534 ESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWD 593

Query: 579 ERAKAIKRMKEMGVDKETGISWI 601
           + A   + M   GV KE G SW+
Sbjct: 594 DAASIRRLMSNRGVKKEPGFSWM 616



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 100/194 (51%), Gaps = 2/194 (1%)

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +Q  V++++ G    P +++  + +    T L  G Q+HS IIK  F+ NP++   L++M
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KC  + D+ KVF  M+  + V+WNS++  + + G    A+ L+ EM  +G+EPT  + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
              L  CS +   + G + L +M+   R S        ++DM  +   L ++R   + M 
Sbjct: 173 SGGLVGCSQLQKGDLGSQ-LHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIM- 230

Query: 523 VKPDVLVWQALLGA 536
           +  +V  W +++  
Sbjct: 231 LNKNVFTWTSMISG 244


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/544 (33%), Positives = 301/544 (55%), Gaps = 7/544 (1%)

Query: 90  VIWN-----SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           +IW+     SL++ Y KCDQ  +A+KLFD+ P RD   WN ++S + ++G+ +M    F 
Sbjct: 137 LIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFD 196

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           +  ELGF + +  +FT+++S+C R       K +H  +       +  V +AL+  Y KC
Sbjct: 197 KMKELGF-EPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKC 255

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     ++VF ++  +N ITW A+I+G          ++L ++M+     P  +T  S +
Sbjct: 256 GCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSII 315

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            A S    L  G+ IHG + +  +  D+ I+ +L+D Y KCG V  A  IF    + + V
Sbjct: 316 YASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVV 375

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S  V++ G    G   +A+ ++  M +  ++ D    S+ L       +L  G+++H  I
Sbjct: 376 SWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCI 435

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I     +N  V   L++MY+KCGD++++ K+F ++  R+ VSW SMI A+  HG   +AL
Sbjct: 436 INHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEAL 495

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L++EM+   V    VTFL++L ACSH GLV++G  +   M   + I P  EHY+C++D+
Sbjct: 496 RLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDL 555

Query: 505 VGRAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           +GRAG L EA   ++R    + D+ +   L  AC +H +  +G    + L    PD P+ 
Sbjct: 556 LGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDDPST 615

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           YIL++N+Y+   +W E  K  ++MKE+G+ K  G SWIEI +++H F  +DK +P AD +
Sbjct: 616 YILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKSNPLADGV 675

Query: 624 HGVL 627
           +  L
Sbjct: 676 YECL 679



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 227/458 (49%), Gaps = 9/458 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLF--DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           V+  SL+ FY  C    +A  +F  +D P+ D   WN ++S +  N  F      F +  
Sbjct: 39  VLSKSLIGFYFSCHDYASAELVFQTNDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLN 97

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
              + + D  ++ ++L AC      +  + IH  +   G   +V VG++L+  Y KC   
Sbjct: 98  CNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQF 157

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               K+F E   R+V  W AVIS   ++   E  LK F KM      PNS+T+   V +C
Sbjct: 158 VDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSC 217

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  G+++H  L +  +  D  + SAL+DMY KCG +E A ++FE     + ++  
Sbjct: 218 TRLLNLERGKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWN 277

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLII 385
            ++ G++  G     ++L ++M   G +  P +++    ++    S+ L  GK IH  I+
Sbjct: 278 AMITGYSLKGDSRSCIELLMRMNDEGTK--PTLMTLTSIIYASSRSVQLRHGKFIHGYIL 335

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           ++    + F++  LI+ Y KCG +  +  +F  ++    VSWN MI+     GN  +AL 
Sbjct: 336 RNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALH 395

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +Y+ MK   V+P  +TF S L ACS +  ++KG E    +   H++         ++DM 
Sbjct: 396 IYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRELHYCIIN-HKLEANEIVMGALLDMY 454

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            + G + EAR    ++P K D++ W +++ A   HG +
Sbjct: 455 AKCGDVDEARKLFHQLP-KRDLVSWTSMIFAYGSHGQA 491



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 195/387 (50%), Gaps = 8/387 (2%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +    L  C  S+L    K+IH  ++ CG++  + +  +LI  YF C   +S   V
Sbjct: 1   MDYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 214 FGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACSGLQ 271
           F       +V  W A++S    N  + E L+LF +++    + P+  TY   + AC GL 
Sbjct: 61  FQTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLG 120

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +  GR+IH  L K  L  D+ + S+LM+MY+KC    DA ++F+   + D      ++ 
Sbjct: 121 RVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVIS 180

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDF 389
            + ++G  E A++ F KM + G E  PN V+  + V      L L  GK++H  +I+   
Sbjct: 181 CYFKDGKAEMALKTFDKMKELGFE--PNSVTFTVVVSSCTRLLNLERGKEVHRELIERRI 238

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + FV + L++MY KCG LE + +VF ++  +N+++WN+MI  ++  G+    +EL   
Sbjct: 239 LLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMR 298

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EG +PT +T  S+++A S    +  G +F+      +RI         ++D   + G
Sbjct: 299 MNDEGTKPTLMTLTSIIYASSRSVQLRHG-KFIHGYILRNRIDVDIFIDVSLIDFYFKCG 357

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGA 536
            +  A + I R   K +V+ W  ++  
Sbjct: 358 YVSSAET-IFRTISKNEVVSWNVMISG 383


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 314/557 (56%), Gaps = 6/557 (1%)

Query: 90  VIWNSLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V+ + LL + L  D     +  LF  +   +  SWN M   + R+         +   L 
Sbjct: 61  VVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLR 120

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D  SF  +L AC R  L    + IH      G   +V V NALI+++  CG+  
Sbjct: 121 NGTLP-DNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVE 179

Query: 209 SGRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVM 265
           + R VF  +   VR+V++W ++ISG +Q+  YE  LK+F ++   G ++P+ +T +S++ 
Sbjct: 180 AARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALS 239

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            C  L  L  G++IHG+        D+ + S+L+DMYSKCG +EDA ++F+     + V 
Sbjct: 240 VCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVC 299

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            T ++ G+AQ+   +EA++LF +M   G   D   ++ VL   G   +L  G+ IH    
Sbjct: 300 WTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCE 359

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           ++    +    N LI MYSKCGD++ ++++F  +   +  SW+++I+  A +G   KAL 
Sbjct: 360 RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALH 419

Query: 446 LYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           L+ +M++   + P ++TFL +L AC+H G V+KG+ +  +MT+++ ++P  EHY C+VD+
Sbjct: 420 LFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDL 479

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GRA LL+EA  FI  +P++PDV++W++LL AC  HG+ E+ ++AA+++   +P      
Sbjct: 480 LGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGAR 539

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++N+Y+ + RW +  +  K M    + K+ G S++EI+  VH   V D+ HP+   I+
Sbjct: 540 VLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIY 599

Query: 625 GVLAELLRLMIDEGYVP 641
             +  + + +  +G+ P
Sbjct: 600 ETMISINKALQSKGFDP 616



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/426 (29%), Positives = 210/426 (49%), Gaps = 28/426 (6%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DNY     +L   A+    H G  +H+S +K     D            + N+L+S +  
Sbjct: 126 DNY-SFPFVLKACARLSLLHKGREIHSSTLKLGVHLD----------VFVQNALISAFSS 174

Query: 102 CDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
           C  +  A  +FD +P  +RD VSWN+M+SG+L++  +++    F   L  G    D+ + 
Sbjct: 175 CGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTL 234

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
              LS C R  L  + K IH L    G+  +V VG++LI  Y KCG     RKVF  +  
Sbjct: 235 VSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPH 294

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           RN + WT++I+G  Q+ L++E ++LF +M +G    ++ T    + AC    AL +GR I
Sbjct: 295 RNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWI 354

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H    + +++ DL   +AL+ MYSKCG ++ A +IF    + D  S + ++ G A NG  
Sbjct: 355 HLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGES 414

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFV 395
           ++A+ LF +M     +I PN ++  LGV       G   +     +++    + T     
Sbjct: 415 DKALHLFSQMEMIS-DIRPNEIT-FLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEH 472

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYE--EMK 451
              ++++  +   L ++ K F R  P   + V W S++ A   HGN    +EL E    +
Sbjct: 473 YGCMVDLLGRANLLVEAEK-FIRTLPIQPDVVIWRSLLFACRNHGN----IELAEFAAKQ 527

Query: 452 LEGVEP 457
           +E +EP
Sbjct: 528 IEELEP 533



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINM-YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
            QI S  I S    +P V++ L+    S   D   S  +F ++   N  SWN M  A++R
Sbjct: 45  NQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSR 104

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
                + + LY  M   G  P + +F  +L AC+ + L++KG E   S  ++  +     
Sbjct: 105 SSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKLG-VHLDVF 163

Query: 497 HYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALL 534
               ++      G +  AR+  + +P +  DV+ W +++
Sbjct: 164 VQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMI 202


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 186/545 (34%), Positives = 303/545 (55%), Gaps = 14/545 (2%)

Query: 107 NAVKLFDDMPMRD--TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           N +K  ++ P  +    ++N ++SGF+ NG  + GF F+++    G    D+ +F   + 
Sbjct: 89  NTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMP-DKFTFPCAIK 147

Query: 165 AC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           AC D  E+    K IH L++  G E +V +G+AL+  Y K G     +  F E+ +R+V+
Sbjct: 148 ACLDVLEI----KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVV 203

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
            W A+++G  Q   +E  L+ F +M+   + P+  T    +   + +  L  GR IHG  
Sbjct: 204 LWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFA 263

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K+   S + + ++L+DMY KC  +EDA +IFE   E D  S   I+    Q G  +  +
Sbjct: 264 MKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTL 323

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP------FVNN 397
           +L  +M+ AGI+ D   V+ VL       +L  G++IH  +I S    +        + N
Sbjct: 324 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKN 383

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            +I+MY+KCG + D+  VF RM+ ++  SWN MI  +  HG G +ALE++  M    ++P
Sbjct: 384 AVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKP 443

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
            +VTF+ +L ACSH G V++G  FL  M   + ++P  EHY CV+DM+GRAG L EA   
Sbjct: 444 DEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
              MP++ + +VW+ALL AC +H  + + + AA+++F  +P+    Y+LM+N+Y   GR+
Sbjct: 504 ALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRY 563

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           +E  +    M++  V K  G SWIE++  VH FV  D+ HP+A +I+  L  L   + + 
Sbjct: 564 EEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEH 623

Query: 638 GYVPN 642
           GYVP+
Sbjct: 624 GYVPD 628



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 192/360 (53%), Gaps = 19/360 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L++ YLK   M +A   F+++P+RD V WN MV+G+ + G+F+M    F+R   + 
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR---MN 229

Query: 151 FYQLDQASFTIILSACDRSELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +  + FT+       + +  ++  ++IH      GY+  V V N+LI  Y KC    
Sbjct: 230 DESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIE 289

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              ++F  MR +++ +W +++S   Q   ++  L+L  +M    I P+ +T  + + ACS
Sbjct: 290 DALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACS 349

Query: 269 GLQALCEGRQIHGILWKLALQ------SDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            L AL  GR+IHG +    L        D+ +++A++DMY+KCGS+ DA  +FE     D
Sbjct: 350 HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKD 409

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             S  ++++G+  +G+  EA+++F +M +  +++ P+ V+ V GV    +  G   Q  +
Sbjct: 410 VASWNIMIMGYGMHGYGNEALEMFSRMCE--VQLKPDEVTFV-GVLSACSHAGFVSQGRN 466

Query: 383 LII--KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARH 437
            ++  KS +   P + +   +I+M  + G L+++ ++   M    N V W +++AA   H
Sbjct: 467 FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLH 526



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 118/238 (49%), Gaps = 14/238 (5%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           +   + NSL+  Y KC  + +A+++F+ M  +D  SWN++VS   + G+ D       R 
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE------EEVTVGNALITS 200
           L  G  Q D  + T +L AC      +  + IH  + + G        ++V + NA+I  
Sbjct: 330 LGAGI-QPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDM 388

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCGS      VF  M  ++V +W  +I G   +    E L++F +M    + P+ +T+
Sbjct: 389 YAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTF 448

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLC--IE--SALMDMYSKCGSVEDAWQI 314
           +  + ACS    + +GR     L ++  + D+   IE  + ++DM  + G +++A+++
Sbjct: 449 VGVLSACSHAGFVSQGRN---FLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYEL 503


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 190/558 (34%), Positives = 309/558 (55%), Gaps = 5/558 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   +  A K+F DMP+RD  SWN M+SGF +NG          R ++    +
Sbjct: 187 SLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDR-MKTEEVK 245

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  + + +L  C +S   +   ++H  V   G E +V V NALI  Y K G     ++V
Sbjct: 246 MDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRV 305

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M VR++++W ++I+   QN      L  F +M    + P+ LT +S       L   
Sbjct: 306 FDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDR 365

Query: 274 CEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             GR +HG + +   L+ D+ I +AL++MY+K GS++ A  +FE     D +S   ++ G
Sbjct: 366 RIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITG 425

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +AQNG   EA+  +  M++ G  I PN  +  ++L  +    +L  G +IH  +IK+   
Sbjct: 426 YAQNGLASEAIDAY-NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLF 484

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   LI+MY KCG LED++ +F  +    SV WN++I++   HG+G KAL+L+++M
Sbjct: 485 LDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDM 544

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           + +GV+   +TF+SLL ACSH GLV++      +M + +RI P  +HY C+VD+ GRAG 
Sbjct: 545 RADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGY 604

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A + +  MP++ D  +W  LL AC IHG++E+G +A+++L     ++   Y+L++NI
Sbjct: 605 LEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNI 664

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+  G+W+   K     ++ G+ K  G S + +   V  F   ++ HPQ   I+  L  L
Sbjct: 665 YANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVL 724

Query: 631 LRLMIDEGYVPNKRFILH 648
              M   GYVP+  F+L 
Sbjct: 725 NAKMKSLGYVPDYSFVLQ 742



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 240/460 (52%), Gaps = 11/460 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            V+   L++ Y     +  +   F  +  ++  SWN+MVS ++R G +          L 
Sbjct: 83  VVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLS 142

Query: 149 LGFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           L   + D  +F  +L AC    LSL   + +HC V   G+E +V V  +LI  Y + G+ 
Sbjct: 143 LSGVRPDFYTFPPVLKAC----LSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAV 198

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               KVF +M VR+V +W A+ISG  QN    E L++  +M    +  +++T  S +  C
Sbjct: 199 EVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPIC 258

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    +  G  +H  + K  L+SD+ + +AL++MYSK G ++DA ++F+  E  D VS  
Sbjct: 259 AQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWN 318

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            I+  + QN     A+  F +M+  G+  D   V ++  +FG  +   +G+ +H  +++ 
Sbjct: 319 SIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRC 378

Query: 388 DFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +   +  + N L+NMY+K G ++ +  VF ++  R+ +SWN++I  +A++G   +A++ 
Sbjct: 379 RWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDA 438

Query: 447 YEEMKLEG--VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           Y  M+ EG  + P   T++S+L A SHVG + +GM+    + + + +        C++DM
Sbjct: 439 YNMME-EGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK-NCLFLDVFVATCLIDM 496

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G+ G L +A S    +P +  V  W A++ +  IHG  E
Sbjct: 497 YGKCGRLEDAMSLFYEIPQETSV-PWNAIISSLGIHGHGE 535



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 218/438 (49%), Gaps = 24/438 (5%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           T ++ +D  V +S +L I A+      G  +H   IK          + + +   + N+L
Sbjct: 241 TEEVKMDT-VTVSSMLPICAQSNDVVGGVLVHLYVIK----------HGLESDVFVSNAL 289

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y K  ++++A ++FD M +RD VSWN++++ + +N +     GFFK   E+ F  + 
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFK---EMLFVGMR 346

Query: 156 QASFTIILSACDRSELS--LVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRK 212
               T++  A    +LS   + + +H  V  C + E ++ +GNAL+  Y K GS    R 
Sbjct: 347 PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARA 406

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACSGLQ 271
           VF ++  R+VI+W  +I+G  QN L  E +  +  M  G  I PN  T++S + A S + 
Sbjct: 407 VFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVG 466

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G +IHG L K  L  D+ + + L+DMY KCG +EDA  +F    +   V    I+ 
Sbjct: 467 ALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIIS 526

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
               +G  E+A+QLF  M   G++ D     ++L      + L    Q     ++ ++  
Sbjct: 527 SLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACS-HSGLVDEAQWCFDTMQKEYRI 585

Query: 392 NPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYE 448
            P + +   +++++ + G LE +  + S M  +   S W +++AA   HGN    L  + 
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNA--ELGTFA 643

Query: 449 EMKLEGVEPTDVTFLSLL 466
             +L  V+  +V +  LL
Sbjct: 644 SDRLLEVDSENVGYYVLL 661



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 198/389 (50%), Gaps = 18/389 (4%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           F ++  +C       V+K +H L+ + G  ++V +   L+T Y   G  S     F  ++
Sbjct: 54  FNLVFRSCTNIN---VAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGR 277
            +N+ +W +++S  V+   Y + +    ++  L  + P+  T+   + AC    +L +G 
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKAC---LSLADGE 167

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           ++H  + K+  + D+ + ++L+ +YS+ G+VE A ++F      D  S   ++ GF QNG
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              EA+++  +M    +++D   VS++L +      +  G  +H  +IK    S+ FV+N
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSN 287

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LINMYSK G L+D+ +VF  M  R+ VSWNS+IAA+ ++ +   AL  ++EM   G+ P
Sbjct: 288 ALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRP 347

Query: 458 TDVTFLSLLH-----ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             +T +SL       +   +G    G        EV  +   A     +V+M  + G + 
Sbjct: 348 DLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNA-----LVNMYAKLGSID 402

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            AR+  E++P + DV+ W  L+   + +G
Sbjct: 403 CARAVFEQLPSR-DVISWNTLITGYAQNG 430


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 308/546 (56%), Gaps = 10/546 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SLL+ Y K   + ++  +F+ M   + VSWN M+SG   NG     F  F R ++ G
Sbjct: 204 VSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVR-MKNG 262

Query: 151 FYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
               +  +   +  A  +  ++++  ++ +C   L G E  V VG ALI  Y KCGS   
Sbjct: 263 ACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASEL-GIEGNVLVGTALIDMYSKCGSLHD 321

Query: 210 GRKVFGEMRVRNVIT--WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            R VF    +   +   W A+ISG  Q+   +E L+L+V+M    I  +  TY S   A 
Sbjct: 322 ARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAI 381

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIES---ALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           +  ++L  GR +HG++ K  L  DL + S   A+ D YSKCG +ED  ++F+  EE D V
Sbjct: 382 AASKSLQFGRVVHGMVLKCGL--DLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIV 439

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T ++  ++Q+   EEA+  F  M + G   +    S+VL        L  G+Q+H L+
Sbjct: 440 SWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLL 499

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
            K+   +   + + LI+MY+KCG + ++ KVF +++  + VSW ++I+ +A+HG    AL
Sbjct: 500 CKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDAL 559

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+  M+L G++   VT L +L ACSH G+V +G+ + + M + + + P  EHYAC++D+
Sbjct: 560 QLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDL 619

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +GR G L +A  FI +MP++P+ +VWQ LLG C +HG+ E+G+ AA K+   +P+  A Y
Sbjct: 620 LGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATY 679

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++N Y  +G +++       MK+ GV KE G SWI ++ +VH F   D+ HPQ   I+
Sbjct: 680 VLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIY 739

Query: 625 GVLAEL 630
             L EL
Sbjct: 740 VKLEEL 745



 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 273/538 (50%), Gaps = 27/538 (5%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D+  +L   A++G      ++H   +K+   F+++++       V++N     Y KC + 
Sbjct: 66  DLIDVLRDCAEKGSIREAKAVHGLVLKS--NFEDKDL------MVLFNHAAHVYSKCSEF 117

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           R A  +FD+MP R+  SW  M+ G   +G F  GF FF   L  G    D+ +++ I+ +
Sbjct: 118 RAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILP-DKFAYSAIIQS 176

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C   +   + KM+H  + + G+   + V  +L+  Y K GS      VF  M   N ++W
Sbjct: 177 CIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSW 236

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            A+ISG   N L+ E   LFV+M  G   PN  T +S   A   L  +  G+++     +
Sbjct: 237 NAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 296

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM--TVILVGFAQNGFEEEAM 343
           L ++ ++ + +AL+DMYSKCGS+ DA  +F+      GV+     ++ G++Q+G  +EA+
Sbjct: 297 LGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEAL 356

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINM 402
           +L+V+M + GI  D     +V        SL  G+ +H +++K         VNN + + 
Sbjct: 357 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADA 416

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSKCG LED  KVF RM  R+ VSW +++ A+++   G +AL  +  M+ EG  P   TF
Sbjct: 417 YSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTF 476

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACV----VDMVGRAGLLIEARS 516
            S+L +C+        + FL+   +VH +  +A  +   C+    +DM  + G + EA  
Sbjct: 477 SSVLISCA-------SLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 529

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             +++   PD++ W A++   + HG  E       ++ L+   + A   L+  +++CS
Sbjct: 530 VFDKIS-NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA-VTLLCVLFACS 585



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/424 (28%), Positives = 200/424 (47%), Gaps = 23/424 (5%)

Query: 152 YQLDQASFTI-ILSACDRSELSLVSKMIHCLVYLCGYEEE--VTVGNALITSYFKCGSSS 208
           YQ  Q    I +L  C        +K +H LV    +E++  + + N     Y KC    
Sbjct: 59  YQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFR 118

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +   VF EM  RNV +WT +I G  ++ L+ +G K F +M    I P+   Y + + +C 
Sbjct: 119 AACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCI 178

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL +L  G+ +H  +      + + + ++L++MY+K GS+ED++ +F    E + VS   
Sbjct: 179 GLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNA 238

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIK 386
           ++ G   NG   EA  LFV+M        PNM +  +V    G    + +GK++ +   +
Sbjct: 239 MISGCTSNGLHLEAFDLFVRMKNGACT--PNMYTLVSVSKAVGKLVDVNMGKEVQNCASE 296

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFARHGNGFKAL 444
                N  V   LI+MYSKCG L D+  VF        V+  WN+MI+ +++ G   +AL
Sbjct: 297 LGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEAL 356

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACS-----HVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           ELY +M   G+     T+ S+ +A +       G V  GM  LK   ++  +S       
Sbjct: 357 ELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGM-VLKCGLDLMVVSVN----N 411

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            + D   + G L + R   +RM  + D++ W  L+ A   +  S +G+ A     L + +
Sbjct: 412 AIADAYSKCGFLEDVRKVFDRMEER-DIVSWTTLVTA---YSQSSLGEEALATFCLMREE 467

Query: 560 SPAP 563
             AP
Sbjct: 468 GFAP 471


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 316/585 (54%), Gaps = 19/585 (3%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           ++ G    G ++HA  +          +  +     + NSL+S Y +C  M  A ++FD 
Sbjct: 125 SRAGRLREGKAVHALSV----------LEGIAGGVFVSNSLVSMYARCGDMGQARQVFDA 174

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL- 173
              RD VSWN +VSG++R G  D     F      G   L+  +   ++  C  S+  + 
Sbjct: 175 ADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGI-GLNSFALGSVIKCCAGSDDPVM 233

Query: 174 -VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
            ++  +H  V   G++ +V + +A++  Y K G+ S    +F  +   NV+ + A+I+GL
Sbjct: 234 DIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGL 293

Query: 233 VQNQ------LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +++      +  E L L+ ++    + P   T+ S + AC+    +  G+QIHG + K 
Sbjct: 294 CRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKH 353

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
             Q D  I SAL+D+Y   G +ED ++ F    + D V+ T ++ G  QN   E A+ LF
Sbjct: 354 CFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLF 413

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +++ AG++ DP  +S+V+           G+QI     KS F     + N  I+MY++ 
Sbjct: 414 HELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARS 473

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           GD+  +++ F  M   + VSW+++I++ A+HG    AL  + EM    V P ++TFL +L
Sbjct: 474 GDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVL 533

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH GLV++G+++ ++M E + +SP  +H  CVVD++GRAG L +A +FI       +
Sbjct: 534 TACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDE 593

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            ++W++LL +C IH D E G+  A+++   QP S A Y+ + NIY  +G     +K    
Sbjct: 594 PVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDV 653

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           MKE GV KE G+SWIE+   VHSFV  DK HP+++ I+  LAE+L
Sbjct: 654 MKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEML 698



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 226/457 (49%), Gaps = 12/457 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL+ Y  C    +A +L D+MP  + VS+N ++  + R G+ +     F R+      
Sbjct: 53  NTLLAAY--CRLGGHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLETFARARRSAGV 110

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ ++   L+AC R+      K +H L  L G    V V N+L++ Y +CG     R+
Sbjct: 111 RADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQ 170

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ- 271
           VF     R+ ++W A++SG V+    ++ L++F  M    I  NS    S +  C+G   
Sbjct: 171 VFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDD 230

Query: 272 -ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             +     +HG + K    SD+ + SA++ MY+K G++ +A  +F+   + + V    ++
Sbjct: 231 PVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMI 290

Query: 331 VGFAQN----GFE--EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            G  ++    G +   EA+ L+ ++   G+E      S+V+    +   +  GKQIH  +
Sbjct: 291 AGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQV 350

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K  F  + F+ + LI++Y   G +ED  + F+ +  ++ V+W +MI+   ++    +AL
Sbjct: 351 LKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERAL 410

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L+ E+   G++P   T  S+++AC+ + +   G +     T+       A   +C + M
Sbjct: 411 TLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSC-IHM 469

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             R+G +  A    + M    D++ W A++ + + HG
Sbjct: 470 YARSGDVHAAVRRFQEME-SHDIVSWSAVISSHAQHG 505


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 319/629 (50%), Gaps = 73/629 (11%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            SL++      ++R+A   FD +P   RDTV  N M+S F R          F   L  G
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 151 FYQLDQASFTIILSACDRSE--LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             + D  SFT ++SA  +     +     +HC V   G    ++V NALI  Y KC +  
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 209 S---GRKVFGEMRVRNVITWT-------------------------------AVISGLVQ 234
           +    RKV  EM  ++ +TWT                               A+ISG VQ
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL----ALQS 290
           + +  +  +LF +M    +  +  T+ S + AC+       G+ +HG + +L      ++
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF----------------- 333
            L + +AL+ +YSK G +  A +IF+     D VS   IL G+                 
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 395

Query: 334 --------------AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
                            G  E+A++LF +M    ++      +  +   G   +L  G+Q
Sbjct: 396 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 455

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H+ +++  F ++    N L+ MY+KCG + D+  VF  M   +SVSWN+MI+A  +HG+
Sbjct: 456 LHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH 515

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G +ALEL+++M  EG++P  ++FL++L AC+H GLV++G  + +SM     ISP  +HYA
Sbjct: 516 GREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 575

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
            ++D++GR+G + EAR  I+ MP +P   +W+A+L  C  +GD E G YAA++LF   P 
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ 635

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
               YIL++N YS +GRW + A+  K M++ GV KE G SWIE+  ++H F+V D  HP+
Sbjct: 636 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPE 695

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           A  ++  L  +   M   GYVP+ +F+LH
Sbjct: 696 AQEVYQFLEVIGARMRKLGYVPDTKFVLH 724



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 192/422 (45%), Gaps = 76/422 (18%)

Query: 91  IWNSLLSFYLKCDQMR---NAVKLFDDMPMRDTVSWNTMVSGFLRNG----------EFD 137
           + N+L++ Y+KCD      +A K+ D+MP +D ++W TMV G++R G          E D
Sbjct: 200 VSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVD 259

Query: 138 MGFGFFKRSLELGFYQ--------------------LDQASFTIILSACDRSELSLVSKM 177
             F     ++  G+ Q                    LD+ +FT +LSAC  +   +  K 
Sbjct: 260 GKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKS 319

Query: 178 IHCLVYLCGY----EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV----- 228
           +H  +         E  + V NAL+T Y K G     +++F  M +++V++W  +     
Sbjct: 320 VHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 379

Query: 229 --------------------------ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
                                     +SG V   L E+ LKLF +M    + P   TY  
Sbjct: 380 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 439

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           ++ AC  L AL  GRQ+H  L +   ++     +AL+ MY+KCG+V DA  +F     LD
Sbjct: 440 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 499

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            VS   ++    Q+G   EA++LF +MV  G  IDP+ +S +  +   + +  + +  H 
Sbjct: 500 SVSWNAMISALGQHGHGREALELFDQMVAEG--IDPDRISFLTILTACNHAGLVDEGFHY 557

Query: 383 L-IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARH 437
              +K DF  +P  ++   LI++  + G + ++  +   M   P  S+ W ++++    +
Sbjct: 558 FESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTN 616

Query: 438 GN 439
           G+
Sbjct: 617 GD 618



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 125/270 (46%), Gaps = 35/270 (12%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIK---TFEP---------------- 76
           + K+ LD +   + +LS  A  G F  G S+H   I+    F P                
Sbjct: 291 SEKVPLDEFT-FTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSK 349

Query: 77  ----------FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM 126
                     FD  N+ +V    V WN++LS Y+    +  AV++F  MP ++ +SW  M
Sbjct: 350 GGKIVIAKRIFDTMNLKDV----VSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVM 405

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
           VSG++  G  +     F +         D  ++   ++AC         + +H  +  CG
Sbjct: 406 VSGYVHGGLSEDALKLFNQMRAEDVKPCDY-TYAGAIAACGELGALKHGRQLHAHLVQCG 464

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           +E   + GNAL+T Y KCG+ +  R VF  M   + ++W A+IS L Q+    E L+LF 
Sbjct: 465 FEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFD 524

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +M    I+P+ +++L+ + AC+    + EG
Sbjct: 525 QMVAEGIDPDRISFLTILTACNHAGLVDEG 554


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 188/554 (33%), Positives = 312/554 (56%), Gaps = 25/554 (4%)

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ---ASFTII 162
           R+A +LFD MP R+ V+W  +V+G+  N +  +G   F   LE+G Y       A+    
Sbjct: 90  RDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 149

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L++CD      + K +H      G E   ++GN+L + Y K GS  S  + F  +  +NV
Sbjct: 150 LASCDVD----LGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNV 205

Query: 223 ITWTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIH 280
           ITWT +IS   +++   E G+ LF+ M +  + PN  T L+SVM+  G +  L  G+Q+ 
Sbjct: 206 ITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFT-LTSVMSLCGTRLDLNLGKQVQ 264

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ----- 335
              +K+  +++L ++++ M +Y + G  ++A ++FE  E+   ++   ++ G+AQ     
Sbjct: 265 AFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSA 324

Query: 336 --------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
                    GF+  A+ +F  + ++ ++ D    S++L V     +L  G+QIH+  IKS
Sbjct: 325 KDDLQARSRGFQ--ALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS 382

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F S+  VN+ L+NMY+KCG ++D+ K F  M  R  V+W SMI+ +++HG   +A++L+
Sbjct: 383 GFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLF 442

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           EEM+L GV P ++TF+SLL ACS+ GLV +   +   M + + I P  +HY C++DM  R
Sbjct: 443 EEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVR 502

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G + +A SFI+R   +P+  +W +L+  C  HG+ E+  YAA+KL   +P     YIL+
Sbjct: 503 LGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILL 562

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            N+Y  + RW++ A+  K MK+  V      SWI I+ +V+ F  +D+ HPQA  ++ +L
Sbjct: 563 LNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLL 622

Query: 628 AELLRLMIDEGYVP 641
             LL      GY P
Sbjct: 623 ENLLEKAKAIGYEP 636



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 218/444 (49%), Gaps = 35/444 (7%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQN-----VYNVPNATVIWNSLLSFYLKCDQ 104
           +L +     H+ LG +L+A           Q       Y   + T + NSL S Y K   
Sbjct: 130 MLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGS 189

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE-FDMGFGFFKRSLELGFYQLDQASFTIIL 163
           + +A++ F  +P ++ ++W TM+S    + E  ++G   F   L  G    ++ + T ++
Sbjct: 190 LDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMP-NEFTLTSVM 248

Query: 164 SAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           S C  R +L+L  K +    +  G E  + V N+ +  Y + G +    ++F +M   ++
Sbjct: 249 SLCGTRLDLNL-GKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASI 307

Query: 223 ITWTAVISGLVQ------NQLYE-----EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ITW A+ISG  Q      + L       + L +F  +   ++ P+  T+ S +  CS + 
Sbjct: 308 ITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMM 367

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G QIH    K    SD+ + SAL++MY+KCG ++DA + F        V+ T ++ 
Sbjct: 368 ALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMIS 427

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--IIKSDF 389
           G++Q+G  +EA+QLF +M  AG+   PN ++ V  +    +  GL ++      ++K ++
Sbjct: 428 GYSQHGQPQEAIQLFEEMRLAGVR--PNEITFV-SLLSACSYAGLVEEAEHYFDMMKKEY 484

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN---GFKA 443
              P V++   +I+M+ + G +ED+     R     N   W+S++A    HGN    F A
Sbjct: 485 CIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYA 544

Query: 444 LELYEEMKLEGVEPTDVTFLSLLH 467
            +   E+K +G+E    T++ LL+
Sbjct: 545 ADKLLELKPKGIE----TYILLLN 564



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 183/363 (50%), Gaps = 14/363 (3%)

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           ++   R++F  M  RNV+TWTA+++G   N     GL++FV+M      P+  T  +++ 
Sbjct: 88  AARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 147

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC     +  G+Q+HG   K   +S   + ++L  +Y+K GS++ A + F    E + ++
Sbjct: 148 ACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 207

Query: 326 MTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
            T ++   A++    E  M LF+ M+  G+  +   +++V+ + G    L LGKQ+ +  
Sbjct: 208 WTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFS 267

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR-------- 436
            K    +N  V N  + +Y + G+ ++++++F +M   + ++WN+MI+ +A+        
Sbjct: 268 FKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDD 327

Query: 437 ---HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
                 GF+AL ++ ++K   ++P   TF S+L  CS +  + +G +      +   +S 
Sbjct: 328 LQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSD 387

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
              + A +V+M  + G + +A      MP +  V  W +++   S HG  +      E++
Sbjct: 388 VVVNSA-LVNMYNKCGCIQDANKAFLEMPTRTFV-TWTSMISGYSQHGQPQEAIQLFEEM 445

Query: 554 FLA 556
            LA
Sbjct: 446 RLA 448



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 11/124 (8%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S +LS+ +       G  +HA  IK+             +  V+ ++L++ Y KC  +++
Sbjct: 357 SSILSVCSAMMALEQGEQIHAQTIKS----------GFLSDVVVNSALVNMYNKCGCIQD 406

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K F +MP R  V+W +M+SG+ ++G+       F+  + L   + ++ +F  +LSAC 
Sbjct: 407 ANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEE-MRLAGVRPNEITFVSLLSACS 465

Query: 168 RSEL 171
            + L
Sbjct: 466 YAGL 469


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/563 (33%), Positives = 313/563 (55%), Gaps = 25/563 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIK---TFEPFDNQNVYNVPNATVIWNSLLSFYLKCD 103
           +++ +SI  K      G  +H++ IK   +  P+             I+ +L+  Y KC 
Sbjct: 71  LTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPY-------------IFTALVDMYGKCW 117

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII- 162
            + +A K+FD+M     V+WN++V+G+L+ G   M    F   L+ G   ++   F++  
Sbjct: 118 SISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKG---IEPTPFSLSG 174

Query: 163 -LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
            L  C + +   +   +H +     +   V VG  LI  Y KC +    R+VF  M  +N
Sbjct: 175 GLVGCSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKN 234

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           V TWT++ISG  +NQL  E + L  +M HL L  PN +TY S + + S  +   + +QIH
Sbjct: 235 VFTWTSMISGYARNQLPHEAMILMREMLHLNL-KPNGMTYNSLLSSFSCPRHFDKCKQIH 293

Query: 281 GILWKLALQSDLCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
             +     +S+  I   L+  YS+C GS+ED  ++       D +S   ++ GF   G  
Sbjct: 294 CRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIG 353

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++ F++M +   ++D    +++    G+ ++L  GKQIH L+ K+ +T N  V NGL
Sbjct: 354 EEALECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGL 413

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY++ G + DS  VFS M   + +SWNS+++  A HG G +A++L+E+M+   ++P +
Sbjct: 414 VSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDN 473

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYACVVDMVGRAGLLIEARSFI 518
            +FL++L ACSHVGL++KG+E+ K M     +  P+ EHYA +VD+ GRAG L EA +FI
Sbjct: 474 TSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFI 533

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E +P++P + +++ALL AC IHG+ ++    A+KL    P  PA YI+++N     G W 
Sbjct: 534 ESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWD 593

Query: 579 ERAKAIKRMKEMGVDKETGISWI 601
           + A   + M   GV KE G SW+
Sbjct: 594 DAASIRRLMSNRGVKKEPGFSWM 616



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 100/194 (51%), Gaps = 2/194 (1%)

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +Q  V++++ G    P +++  + +    T L  G Q+HS IIK  F+ NP++   L++M
Sbjct: 53  IQFLVQLLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDM 112

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y KC  + D+ KVF  M+  + V+WNS++  + + G    A+ L+ EM  +G+EPT  + 
Sbjct: 113 YGKCWSISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSL 172

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
              L  CS +   + G + L +M+   R S        ++DM  +   L ++R   + M 
Sbjct: 173 SGGLVGCSQLQKGDLGSQ-LHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIM- 230

Query: 523 VKPDVLVWQALLGA 536
           +  +V  W +++  
Sbjct: 231 LNKNVFTWTSMISG 244


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 198/586 (33%), Positives = 318/586 (54%), Gaps = 44/586 (7%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  A+ +F+ +   + + WNTM+ G   + +       + R + LG +  +  SF  +
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLG-HLPNSYSFPFL 70

Query: 163 LSACDRSELSLVSKMIHCLVYL--CGYEE-----------------------------EV 191
           L +C +S+     + IH  V    CG +                              +V
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G   S RKVF E+  R+V++W A+I+G V+N  YEE L+LF +M   
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL----ALQSDLCIESALMDMYSKCGS 307
            + P+  T +S V AC+   ++  GRQ+H  +          S L I +AL+D+YSKCG 
Sbjct: 191 NVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           VE A+ +FE     D VS   ++ G+      +EA+ LF +M+++G    PN V+ +L V
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGE--CPNDVT-LLSV 307

Query: 368 FGVDTSLG---LGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
                 LG   +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF+ M  R
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR 367

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           +  SWN+MI  FA HG    A +L+  M+   VEP D+TF+ LL ACSH GL++ G +  
Sbjct: 368 SLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIF 427

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           KSMT+ + ++P+ EHY C++D++G +GL  EA   I  MP++PD ++W +LL AC  HG+
Sbjct: 428 KSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGN 487

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E+ +  A+KL   +P++   Y+L++NIY+ +GRW++ A+    +   G+ K  G S IE
Sbjct: 488 LELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIE 547

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++  VH F++ DK+HP+   I+ +L E+   + + G+ P+   +L 
Sbjct: 548 VDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQ 593



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 59/333 (17%)

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           +LC+ S   D       +  A  +FE  +E + +    +L G A +     A++++V+MV
Sbjct: 3   ELCVVSPHFD------GLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMV 56

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             G   +      +L       +   G+QIH+ ++K     + +V+  LI+MY++ G LE
Sbjct: 57  SLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLE 116

Query: 411 D-------------------------------SIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           D                               + KVF  +  R+ VSWN+MI  +  +G 
Sbjct: 117 DARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGR 176

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME---FLKSMTEVHRISPRAE 496
             +ALEL++EM    V P + T +S++ AC+  G +  G +   ++    + H  S   +
Sbjct: 177 YEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLK 236

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               ++D+  + G +  A    E +  K DV+ W  L+G     G +    Y  E L L 
Sbjct: 237 IVNALIDLYSKCGDVETAFGLFEGLSCK-DVVSWNTLIG-----GYTHTNLY-KEALLLF 289

Query: 557 QP-----DSPAPYILMANIYSCS-------GRW 577
           Q      + P    L++ + +C+       GRW
Sbjct: 290 QEMLRSGECPNDVTLLSVLPACAHLGAIDIGRW 322


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 191/584 (32%), Positives = 306/584 (52%), Gaps = 17/584 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L    +  +   G SLHA  +KT          ++ ++  + +SLL  Y +  ++ 
Sbjct: 111 LSVVLKACGQSSNIAYGESLHAYAVKT----------SLLSSVYVGSSLLDMYKRVGKID 160

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK---RSLELGFYQLDQASFTIIL 163
            + ++F +MP R+ V+W  +++G +  G +  G  +F    RS EL     D  +F I L
Sbjct: 161 KSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELS----DTYTFAIAL 216

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            AC         K IH  V + G+   + V N+L T Y +CG    G  +F  M  R+V+
Sbjct: 217 KACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVV 276

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +WT++I    +     + ++ F+KM    + PN  T+ S   AC+ L  L  G Q+H  +
Sbjct: 277 SWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNV 336

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
             L L   L + +++M MYS CG++  A  +F+     D +S + I+ G+ Q GF EE  
Sbjct: 337 LSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGF 396

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           + F  M ++G +     ++++L V G    +  G+Q+H+L +      N  V + LINMY
Sbjct: 397 KYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMY 456

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SKCG ++++  +F      + VS  +MI  +A HG   +A++L+E+    G  P  VTF+
Sbjct: 457 SKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFI 516

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S+L AC+H G ++ G  +   M E + + P  EHY C+VD++ RAG L +A   I  M  
Sbjct: 517 SVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSW 576

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           K D +VW  LL AC   GD E G+ AAE++    P      + +ANIYS +G  +E A  
Sbjct: 577 KKDDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANV 636

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            K MK  GV KE G S I+I+  V +FV  D+ HPQ++ I+ +L
Sbjct: 637 RKNMKAKGVIKEPGWSSIKIKDCVSAFVSGDRFHPQSEDIYNIL 680



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 120/470 (25%), Positives = 233/470 (49%), Gaps = 8/470 (1%)

Query: 80  QNVYNVPNATVIW---NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEF 136
           +N+  + N  ++    NS L   +    +R A ++FD MP  D VSW +++  ++     
Sbjct: 28  ENIVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNS 87

Query: 137 DMGFGFFK--RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
           D     F   R ++      D +  +++L AC +S      + +H           V VG
Sbjct: 88  DEALILFSAMRVVDHAV-SPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVG 146

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           ++L+  Y + G      +VF EM  RN +TWTA+I+GLV    Y+EGL  F +M      
Sbjct: 147 SSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEEL 206

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            ++ T+  ++ AC+GL+ +  G+ IH  +      + LC+ ++L  MY++CG ++D   +
Sbjct: 207 SDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCL 266

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE   E D VS T ++V + + G E +A++ F+KM  + +  +    +++       + L
Sbjct: 267 FENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRL 326

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             G+Q+H  ++      +  V+N ++ MYS CG+L  +  +F  M  R+ +SW+++I  +
Sbjct: 327 VWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGY 386

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
            + G G +  + +  M+  G +PTD    SLL    ++ ++  G + + ++     +   
Sbjct: 387 CQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQ-VHALALCFGLEQN 445

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +   + +++M  + G + EA S I     + D++   A++   + HG S+
Sbjct: 446 STVRSSLINMYSKCGSIKEA-SMIFGETDRDDIVSLTAMINGYAEHGKSK 494


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 309/534 (57%), Gaps = 9/534 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y KC   + + K+FD++  R+ +SWN +++ F   G++      F+  ++ G
Sbjct: 278 VGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEG 337

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  + + +L       L  +   +H        E +V + N+LI  Y K GSS   
Sbjct: 338 M-RPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIA 396

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F +M VRN+++W A+I+   +N+L  E ++L  +M      PN++T+ + + AC+ L
Sbjct: 397 STIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARL 456

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G++IH  + ++    DL + +AL DMYSKCG +  A  +F  +   D VS  +++
Sbjct: 457 GFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFNISVR-DEVSYNILI 515

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKS 387
           +G+++     E+++LF +M   G+   P++VS  +GV     +L     GK+IH L+++ 
Sbjct: 516 IGYSRTNDSLESLRLFSEMRLLGMR--PDIVS-FMGVVSACANLAFIRQGKEIHGLLVRK 572

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F ++ FV N L+++Y++CG ++ + KVF  +  ++  SWN+MI  +   G    A+ L+
Sbjct: 573 LFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLF 632

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           E MK +GVE   V+F+++L ACSH GL+ KG ++ K M +++ I P   HYAC+VD++GR
Sbjct: 633 EAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCDLN-IEPTHTHYACMVDLLGR 691

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGL+ EA   I  + + PD  +W ALLGAC IHG+ E+G +AAE LF  +P     YIL+
Sbjct: 692 AGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILL 751

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
           +N+Y+ + RW E  K  + MK  G  K  G SW+++   VH+F+V +K+    D
Sbjct: 752 SNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVGDLVHAFLVGEKIDSLDD 805



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/409 (29%), Positives = 207/409 (50%), Gaps = 7/409 (1%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGF 142
           +P +  +  SL+  Y       N++ LF       R    WNT++      G FD GFG 
Sbjct: 66  LPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVFD-GFGT 124

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           +   +  G  + D+ ++  +L  C         + +H + +  G++ +V VGN L+  Y 
Sbjct: 125 YNTMVRAGV-KPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYG 183

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTY 260
            CG      KVF EM  R+ ++W  VI     +  YEE L  F  M      I P+ +T 
Sbjct: 184 NCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTV 243

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLAL-QSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           +S +  C+  +     R +H    K+ L    + + +AL+D+Y KCGS + + ++F+  +
Sbjct: 244 VSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEID 303

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + +S   I+  F+  G   +A+ +F  M+  G+  +   +S++L V G      LG +
Sbjct: 304 ERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGME 363

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H   +K    S+ F++N LI+MY+K G    +  +F++M  RN VSWN+MIA FAR+  
Sbjct: 364 VHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRL 423

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
            ++A+EL  +M+ +G  P +VTF ++L AC+ +G +N G E    +  V
Sbjct: 424 EYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRV 472



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 119/302 (39%), Gaps = 41/302 (13%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVF--SRMAPRNSVSWNS 429
           +L   KQ+H+  +   F      +   LI  Y+  G   +S+ +F  S    R++  WN+
Sbjct: 49  TLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNT 108

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           +I A +  G  F     Y  M   GV+P + T+  +L  CS    V KG        EVH
Sbjct: 109 LIRANSIAGV-FDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKG-------REVH 160

Query: 490 RISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            ++ +      V      +   G  GL  +A    + MP + D + W  ++G CS+HG  
Sbjct: 161 GVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPER-DKVSWNTVIGLCSLHGFY 219

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA------IKRMKEMGVDKETG 597
           E        +  A+P      + + ++       +++  A        ++  +G   + G
Sbjct: 220 EEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVG 279

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGV-----------------LAELLRLMIDEGYV 640
            + +++  +  S     K+  + D  + +                   ++ RLMIDEG  
Sbjct: 280 NALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMR 339

Query: 641 PN 642
           PN
Sbjct: 340 PN 341


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 194/560 (34%), Positives = 305/560 (54%), Gaps = 5/560 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  Y K  ++  A K+FD MP RDTV WNTM++G ++N  FD     F+  +  G
Sbjct: 145 VGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADG 204

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             ++D ++ T +L A    +   V   I CL    G+     V   LI+ Y KCG  ++ 
Sbjct: 205 V-RVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R +F  +   ++I + A+ISG   N   E  +KLF ++       +S T +  +   S  
Sbjct: 264 RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPF 323

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L     IHG   K  +  +  + +A   +Y+K   ++ A  +F+ + E   V+   ++
Sbjct: 324 GHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMI 383

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G+ QNG  E A+ LF +M+K   E  PN V+   +L       SL  GK +H LI   +
Sbjct: 384 SGYTQNGSTETAISLFKEMMKT--EFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSEN 441

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N +V+  L++MY+KCG++ ++ ++F  M+ +N+V+WN+MI  +  HG G +AL+LY 
Sbjct: 442 LEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYN 501

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM   G  P+ VTFLS+L+ACSH GLV +G E   +M   +RI P  EHYAC+VD++GR+
Sbjct: 502 EMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRS 561

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A  FI++MPV+P   VW  LLGAC IH D+++ + A+E+LF   P S   Y+L++
Sbjct: 562 GQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLS 621

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS    + + A   + +K+  + K  G + IE+    H FV  D+ H  A  I+  L 
Sbjct: 622 NIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLE 681

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           +L   M + GY       LH
Sbjct: 682 KLTGKMREMGYQAETVPALH 701



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 130/526 (24%), Positives = 236/526 (44%), Gaps = 18/526 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L S+  K   F      HA FI     FD      +   T +   L  F       R+A 
Sbjct: 15  LFSLINKASTFPHLAQTHAQFILNGYRFD------LATLTKLTQKLFDF----SATRHAR 64

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LF  +P  D   +N +V GF  N         +           D  ++   ++AC   
Sbjct: 65  ALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSND 124

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
           +  +   ++H    + GY   V VG+AL+  Y K       RKVF  M  R+ + W  +I
Sbjct: 125 KHLM---LLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMI 181

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           +GLV+N  +++ ++LF +M    +  +S T  + + A + LQ L  G  I  +  K+   
Sbjct: 182 NGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFG 241

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
               + + L+ +YSKCG V  A  +F      D ++   ++ GF  NG  E +++LF ++
Sbjct: 242 FCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFREL 301

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + +G  +  + +  ++ +      L L   IH   +KS    NP V+     +Y+K  ++
Sbjct: 302 LFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEI 361

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           + +  +F     +  V+WN+MI+ + ++G+   A+ L++EM      P  VT  ++L AC
Sbjct: 362 DLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSAC 421

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           + +G ++ G +++  + +   + P       +VDM  + G + EA    + M  K + + 
Sbjct: 422 AQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTVT 479

Query: 530 WQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           W  ++    +HG   E  K   E L L    +P+    ++ +Y+CS
Sbjct: 480 WNTMIFGYGLHGYGHEALKLYNEMLHLGY--NPSAVTFLSVLYACS 523


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 192/583 (32%), Positives = 317/583 (54%), Gaps = 39/583 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+L+ Y K   + +A++LF+ MP RD VSWN MVS   ++G               G  
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV- 290

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  ++T  L+AC +       K +H  V       +  V +A++  Y KCG     R+
Sbjct: 291 RLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARR 350

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +R RN ++WT +I G +Q   + E L+LF +M   L+  +     + +  CS    
Sbjct: 351 VFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMD 410

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +C  RQ+H +  K      + I ++L+ MY+KCG++++A  IF   EE D VS T +L  
Sbjct: 411 MCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTA 470

Query: 333 FA-------------------------------QNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           ++                               Q+G EE+ ++++  M+    ++ P+ V
Sbjct: 471 YSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK-DVIPDWV 529

Query: 362 SAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           + V  +F     +G   LG QI    +K     +  V N +I MYSKCG + ++ K+F  
Sbjct: 530 TYVT-LFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDF 588

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           ++ ++ VSWN+MI  +++HG G +A+E++++M  +G +P  ++++++L +CSH GLV +G
Sbjct: 589 LSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEG 648

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +   +   H +SP  EH++C+VD++ RAG LIEA++ I+ MP+KP   VW ALL AC 
Sbjct: 649 KFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACK 708

Query: 539 IHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            HG++E+ + AA+ LF L  PDS   Y+L+A IY+ +G+  + A+  K M++ G+ K  G
Sbjct: 709 THGNNELAELAAKHLFDLDSPDS-GGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPG 767

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
            SW+E++ +VH F  +D  HPQ   I   L EL+  +   GYV
Sbjct: 768 YSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYV 810



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/554 (26%), Positives = 255/554 (46%), Gaps = 71/554 (12%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  +  N +++ Y K   + +A +LF  MP RD  SWNT++SG+ ++G F      F  
Sbjct: 93  PN-VITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
               G    +  +F   + +C       V+  +  L+   G++ +  V   ++  + +CG
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 206 SSSSGRKVFGE-------------------------------MRVRNVITWTAVISGLVQ 234
           +     K F +                               M  R+V++W  ++S L Q
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
           +    E L + V MH   +  +S TY SS+ AC+ L +L  G+Q+H  + +     D  +
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            SA++++Y+KCG  ++A ++F    + + VS TV++ GF Q G   E+++LF +M    +
Sbjct: 332 ASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELM 391

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            +D   ++ ++        + L +Q+HSL +KS  T    ++N LI+MY+KCG+L+++  
Sbjct: 392 TVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAES 451

Query: 415 VFSR-------------------------------MAPRNSVSWNSMIAAFARHGNGFKA 443
           +FS                                M+ RN ++WN+M+ A+ +HG     
Sbjct: 452 IFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDG 511

Query: 444 LELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           L++Y  M  E  V P  VT+++L   C+ +G    G +      +V  I   +   A V+
Sbjct: 512 LKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNA-VI 570

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL--FLAQPDS 560
            M  + G + EAR   + +  K D++ W A++   S HG   MGK A E     L +   
Sbjct: 571 TMYSKCGRISEARKIFDFLSRK-DLVSWNAMITGYSQHG---MGKQAIEIFDDMLKKGAK 626

Query: 561 PAPYILMANIYSCS 574
           P     +A + SCS
Sbjct: 627 PDYISYVAVLSSCS 640



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 197/428 (46%), Gaps = 77/428 (17%)

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           E  V   N ++  Y K GS S   ++FG M  R+V +W  ++SG  Q+  + + ++ FV 
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 248 MHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M   G   PN+ T+  ++ +C  L       Q+ G+L K   Q D  + + ++DM+ +CG
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 307 S-------------------------------VEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +                               V+ A ++FE   E D VS  +++   +Q
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           +G   EA+ + V M   G+ +D    ++ L      +SLG GKQ+H+ +I+S    +P+V
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            + ++ +Y+KCG  +++ +VFS +  RN+VSW  +I  F ++G   ++LEL+ +M+ E +
Sbjct: 332 ASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELM 391

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------------- 502
                   +++  CS+       M+   +  ++H +S ++ H   VV             
Sbjct: 392 TVDQFALATIISGCSNR------MDMCLA-RQLHSLSLKSGHTRAVVISNSLISMYAKCG 444

Query: 503 ---------------DMVGRAGLLI---------EARSFIERMPVKPDVLVWQALLGACS 538
                          D+V   G+L          +AR F + M  + +V+ W A+LGA  
Sbjct: 445 NLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR-NVITWNAMLGAYI 503

Query: 539 IHGDSEMG 546
            HG  E G
Sbjct: 504 QHGAEEDG 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 142/318 (44%), Gaps = 56/318 (17%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           T L + ++C    AL + R   G+L     + ++   + +M+ Y+K GS+ DA ++F   
Sbjct: 68  TLLHAYLSCG---ALPDAR---GLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRM 121

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----SL 374
              D  S   ++ G+ Q+G   +AM+ FV M ++G  + PN  +     FG       +L
Sbjct: 122 PRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSL-PNAFT-----FGCAMKSCGAL 175

Query: 375 G---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG------------------------ 407
           G   +  Q+  L+ K  F  +P V  G+++M+ +CG                        
Sbjct: 176 GWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSML 235

Query: 408 -------DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
                   ++ ++++F  M  R+ VSWN M++A ++ G   +AL +  +M   GV     
Sbjct: 236 AGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDST 295

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFI 518
           T+ S L AC+ +  +  G +      +V R  P  + Y  + +V++  + G   EAR   
Sbjct: 296 TYTSSLTACAKLSSLGWGKQL---HAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVF 352

Query: 519 ERMPVKPDVLVWQALLGA 536
             +  + + + W  L+G 
Sbjct: 353 SSLRDR-NTVSWTVLIGG 369



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           T K V+ ++V    L    A  G   LG  +    +K     D          T + N++
Sbjct: 520 TEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILD----------TSVMNAV 569

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y KC ++  A K+FD +  +D VSWN M++G+ ++G        F   L+ G  + D
Sbjct: 570 ITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKG-AKPD 628

Query: 156 QASFTIILSACDRSEL 171
             S+  +LS+C  S L
Sbjct: 629 YISYVAVLSSCSHSGL 644


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 287/494 (58%), Gaps = 5/494 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D A+++ ++  C  +       +I   +Y  G+   + + N LI  Y K    +   ++F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNVI+WT +IS   + +++++ L+L V M    + PN  TY S + +C+G+  + 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             R +H  + K  L+SD+ + SAL+D+++K G  EDA  +F+     D +    I+ GFA
Sbjct: 179 --RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN   + A++LF +M +AG   +   +++VL        L LG Q H  I+K D   +  
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLI 294

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN L++MY KCG LED+++VF++M  R+ ++W++MI+  A++G   +AL+L+E MK  G
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG 354

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
            +P  +T + +L ACSH GL+  G  + +SM +++ I P  EHY C++D++G+AG L +A
Sbjct: 355 TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDA 414

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              +  M  +PD + W+ LLGAC +  +  + +YAA+K+    P+    Y L++NIY+ S
Sbjct: 415 VKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            +W    +   RM++ G+ KE G SWIE+ KQ+H+F++ D  HPQ   +   L +L+  +
Sbjct: 475 QKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRL 534

Query: 635 IDEGYVPNKRFILH 648
              GYVP   F+L 
Sbjct: 535 TGIGYVPETNFVLQ 548



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 201/385 (52%), Gaps = 28/385 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+K + + +A +LFD MP R+ +SW TM+S + +           +++LEL   
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-------CKIHQKALELLVL 152

Query: 153 QL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            L      +  +++ +L +C+   +S V +M+HC +   G E +V V +ALI  + K G 
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCN--GMSDV-RMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF EM   + I W ++I G  QN   +  L+LF +M          T  S + A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL  L  G Q H  + K     DL + +AL+DMY KCGS+EDA ++F   +E D ++ 
Sbjct: 270 CTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLI 384
           + ++ G AQNG+ +EA++LF +M  +G +  PN ++ ++GV    +  GL +    +   
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTK--PNYIT-IVGVLFACSHAGLLEDGWYYFRS 384

Query: 385 IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGF 441
           +K  +  +P   +   +I++  K G L+D++K+ + M    ++V+W +++ A     N  
Sbjct: 385 MKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN-- 442

Query: 442 KALELYEEMKLEGVEPTDVTFLSLL 466
             L  Y   K+  ++P D    +LL
Sbjct: 443 MVLAEYAAKKVIALDPEDAGTYTLL 467



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG   H   +K    +D   + N        N+L+  Y KC  + +A+++F+ M  RD
Sbjct: 276 LELGMQAHVHIVK----YDQDLILN--------NALVDMYCKCGSLEDALRVFNQMKERD 323

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKR 145
            ++W+TM+SG  +NG        F+R
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFER 349


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 195/558 (34%), Positives = 309/558 (55%), Gaps = 28/558 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           ++LL  Y KC+++ +A ++F  + +R++V+WN ++SG+   G+    F      +EL   
Sbjct: 139 SALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLD-CMELEGV 197

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D  +F  +L+  D  +L  ++  +H  +   G   + TV NA+IT+Y +CGS     +
Sbjct: 198 EIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAER 257

Query: 213 VF-GEMRVRNVITWTAVISG-LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           VF G +  R+++TW ++++  LV NQ  E          LG   P+  TY S + A    
Sbjct: 258 VFDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGF-EPDIYTYTSVISAAFEX 316

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMY--SKCGSVEDAWQIFEFAEELDGVSMTV 328
               +G+ +HG++ K  L+  + I ++L+ MY  S   S+++A  IFE  E  D VS   
Sbjct: 317 AHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNS 376

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           IL GF+Q+G  E+A++ F  M    + ID    SAVL       +L LG+Q+H L     
Sbjct: 377 ILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVL----- 431

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                            CG +ED+ K F      +S++WNS+I  +A+HG G  AL+L+ 
Sbjct: 432 -----------------CGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFF 474

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK   V+   +TF+++L ACSH+GLV +G  FLKSM   + I PR EHYAC++D++GRA
Sbjct: 475 LMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRA 534

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA++ IE MP +PD +VW+ LLGAC   GD E+    A  L   +P+    Y+L++
Sbjct: 535 GRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLS 594

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           +++    RW E+A   + MKE GV K  G SWIE++ +VHSF  +D+ HP  + I+  L 
Sbjct: 595 SMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVHSFNAEDRSHPNCEEIYLRLG 654

Query: 629 ELLRLMIDEGYVPNKRFI 646
           +L+  +    YV N   +
Sbjct: 655 DLMEEIRRLDYVANSEIM 672



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 219/466 (46%), Gaps = 31/466 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++S Y KC ++R A K+FD+   RD VSWNTM++G +  G F+    F K     GF 
Sbjct: 38  NNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYGF- 96

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            +D  SF  IL          V + +H ++   GYE  V  G+AL+  Y KC       +
Sbjct: 97  AVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFE 156

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  + +RN +TW A+ISG            L   M L  +  +  T+   +        
Sbjct: 157 VFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDL 216

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA-EELDGVSMTVILV 331
                Q+H  + K  L SD  + +A++  YS+CGS+EDA ++F+ A E  D V+   +L 
Sbjct: 217 HKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLA 276

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +  N  EEEA +LF++M   G E D    ++V+         G GK +H L+IK     
Sbjct: 277 AYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEF 336

Query: 392 NPFVNNGLINMY--SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
              ++N LI MY  S    +++++ +F  +  ++ VSWNS++  F++ G    AL+ +E 
Sbjct: 337 LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFEN 396

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ + V      F ++L +CS +  +  G +                H  C        G
Sbjct: 397 MRSQYVVIDHYAFSAVLRSCSDLATLQLGQQV---------------HVLC--------G 433

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           ++ +AR   +  P K   + W +L+   + HG    GK A +  FL
Sbjct: 434 VIEDARKSFDATP-KDSSIAWNSLIFGYAQHG---RGKIALDLFFL 475



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 220/476 (46%), Gaps = 60/476 (12%)

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            + L Q+SFT +  A           + HCL    G    +   N +I+ Y KCG     
Sbjct: 4   LHSLSQSSFTALYRA----------SVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIA 53

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF--VKMHLGLINPNSLTYLSSVMACS 268
            K+F E   R+ ++W  +I+G V    +E  L+    +K +   ++  S   +   +AC 
Sbjct: 54  SKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACV 113

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G   +  G+Q+H ++ K+  + ++   SAL+DMY+KC  VEDA+++F+     + V+   
Sbjct: 114 GYVEV--GQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNA 171

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+A  G    A  L   M   G+EID    + +L +        L  Q+H+ I+K  
Sbjct: 172 LISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHG 231

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVF-SRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             S+  V N +I  YS+CG +ED+ +VF   +  R+ V+WNSM+AA+  +    +A EL+
Sbjct: 232 LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFELF 291

Query: 448 EEMKLEGVEPTDVTFLSLLHAC---SHVG--------LVNKGMEFL-------------- 482
            EM++ G EP   T+ S++ A    +H G        ++ +G+EFL              
Sbjct: 292 LEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKS 351

Query: 483 --KSMTEVHRISPRAEH-----YACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQA 532
             KSM E   I    E+     +  ++    ++GL  +A  F E M    V  D   + A
Sbjct: 352 HSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSA 411

Query: 533 LLGACSIHGDSEMGKYA---------AEKLFLAQP-DSPAPYILMANIYSCSGRWK 578
           +L +CS     ++G+           A K F A P DS   +  +   Y+  GR K
Sbjct: 412 VLRSCSDLATLQLGQQVHVLCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGK 467


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 181/597 (30%), Positives = 320/597 (53%), Gaps = 50/597 (8%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV--------------------KL 111
           + F+  + +NVY       +WN ++S Y K    + ++                    +L
Sbjct: 155 RVFDTMEKKNVY-------LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASEL 207

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +  RD +SWN+M+SG++ NG  + G   +K+ + LG   +D A+   +L  C  S  
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGI-DVDLATIISVLVGCANSGT 266

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             + K +H L     +E  +   N L+  Y KCG      +VF +M  RNV++WT++I+G
Sbjct: 267 LSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             ++   +  ++L  +M    +  + +   S + AC+   +L  G+ +H  +    ++S+
Sbjct: 327 YTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESN 386

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + +ALMDMY+KCGS++ A  +F      D +S   ++                     
Sbjct: 387 LFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI--------------------- 425

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ D   ++ +L      ++L  GK+IH  I+++ ++S+  V N L+++Y KCG L  
Sbjct: 426 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MI+ +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 486 ARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+ +G  F   M     I P+ EHYAC+VD++ R G L +A  FIE +P+ PD  +W 
Sbjct: 546 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWG 605

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
           ALL  C I+ D E+ +  AE++F  +P++   Y+L+ANIY+ + +W+E  +  +++ + G
Sbjct: 606 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKG 665

Query: 592 VDKETGISWIEIEKQVHSFVV-DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + K  G SWIEI+ +V+ FV  ++  HP +  I  +L ++ R M +EGY P  ++ L
Sbjct: 666 LRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYAL 722



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 199/441 (45%), Gaps = 76/441 (17%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +L+  +++ +L  C  S+     K +H ++       +  +G  L++ Y  CG    GR+
Sbjct: 96  ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRR 155

Query: 213 VFGEMRVRN--------------------------------------------------- 221
           VF  M  +N                                                   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+W ++ISG V N L E GL+++ +M    I+ +  T +S ++ C+    L  G+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K   +  +   + L+DMYSKCG ++ A ++FE   E + VS T ++ G+ ++G  + 
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A++L  +M K G+++D    +++L       SL  GK +H  I  ++  SN FV N L++
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMD 395

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG ++ +  VFS M  ++ +SWN+MI                       ++P   T
Sbjct: 396 MYTKCGSMDGANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRT 434

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIER 520
              +L AC+ +  + +G E    +      S R  H A  +VD+  + G+L  AR   + 
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDM 492

Query: 521 MPVKPDVLVWQALLGACSIHG 541
           +P K D++ W  ++    +HG
Sbjct: 493 IPSK-DLVSWTVMISGYGMHG 512



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 114/266 (42%), Gaps = 55/266 (20%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++ F Q G  E AM+L     K+  E++    S+VL +     SL  GK++HS+I  ++ 
Sbjct: 73  ILHFCQLGNLENAMELVCMCQKS--ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNV 130

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN-------------------------- 423
             +  +   L+++Y+ CGDL++  +VF  M  +N                          
Sbjct: 131 AVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI 190

Query: 424 -------------------------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
                                     +SWNSMI+ +  +G   + LE+Y++M   G++  
Sbjct: 191 MVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVD 250

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
             T +S+L  C++ G ++ G + + S+        R      ++DM  + G L  A    
Sbjct: 251 LATIISVLVGCANSGTLSLG-KAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVF 309

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSE 544
           E+M  + +V+ W +++   +  G S+
Sbjct: 310 EKMGER-NVVSWTSMIAGYTRDGRSD 334


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 169/494 (34%), Positives = 287/494 (58%), Gaps = 5/494 (1%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D A+++ ++  C  +       +I   +Y  G+   + + N LI  Y K    +   ++F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            +M  RNVI+WT +IS   + +++++ L+L V M    + PN  TY S + +C+G+  + 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             R +H  + K  L+SD+ + SAL+D+++K G  EDA  +F+     D +    I+ GFA
Sbjct: 179 --RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
           QN   + A++LF +M +AG   +   +++VL        L LG Q H  I+K D   +  
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD--QDLI 294

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN L++MY KCG LED+++VF++M  R+ ++W++MI+  A++G   +AL+L+E MK  G
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSG 354

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
            +P  +T + +L ACSH GL+  G  + +SM +++ I P  EHY C++D++G+AG L +A
Sbjct: 355 TKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDA 414

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              +  M  +PD + W+ LLGAC +  +  + +YAA+K+    P+    Y L++NIY+ S
Sbjct: 415 VKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANS 474

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            +W    +   RM++ G+ KE G SWIE+ KQ+H+F++ D  HPQ   +   L +L+  +
Sbjct: 475 QKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRL 534

Query: 635 IDEGYVPNKRFILH 648
              GYVP   F+L 
Sbjct: 535 TGIGYVPETNFVLQ 548



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 201/385 (52%), Gaps = 28/385 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L++ Y+K + + +A +LFD MP R+ +SW TM+S + +           +++LEL   
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSK-------CKIHQKALELLVL 152

Query: 153 QL------DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            L      +  +++ +L +C+   +S V +M+HC +   G E +V V +ALI  + K G 
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCN--GMSDV-RMLHCGIIKEGLESDVFVRSALIDVFAKLGE 209

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF EM   + I W ++I G  QN   +  L+LF +M          T  S + A
Sbjct: 210 PEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRA 269

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL  L  G Q H  + K     DL + +AL+DMY KCGS+EDA ++F   +E D ++ 
Sbjct: 270 CTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITW 327

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLI 384
           + ++ G AQNG+ +EA++LF +M  +G +  PN ++ ++GV    +  GL +    +   
Sbjct: 328 STMISGLAQNGYSQEALKLFERMKSSGTK--PNYIT-IVGVLFACSHAGLLEDGWYYFRS 384

Query: 385 IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGF 441
           +K  +  +P   +   +I++  K G L+D++K+ + M    ++V+W +++ A     N  
Sbjct: 385 MKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN-- 442

Query: 442 KALELYEEMKLEGVEPTDVTFLSLL 466
             L  Y   K+  ++P D    +LL
Sbjct: 443 MVLAEYAAKKVIALDPEDAGTYTLL 467



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG   H   +K    +D   + N        N+L+  Y KC  + +A+++F+ M  RD
Sbjct: 276 LELGMQAHVHIVK----YDQDLILN--------NALVDMYCKCGSLEDALRVFNQMKERD 323

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKR 145
            ++W+TM+SG  +NG        F+R
Sbjct: 324 VITWSTMISGLAQNGYSQEALKLFER 349


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 274/486 (56%), Gaps = 1/486 (0%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           I++AC + +    ++ IH  +       +  + N+LI  Y KCG+ S  R VF +M  R+
Sbjct: 66  IIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRD 125

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WT +I+G  QN +  E + L   M      PN  T+ S + A         G Q+H 
Sbjct: 126 VVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHA 185

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K     D+ + SAL+DMY++C  ++ A  +F+     + VS   ++ GFA+    E 
Sbjct: 186 LAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGET 245

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
            +  F +M + G        S++   F    +L  G+ +H+ +IKS      FV N ++ 
Sbjct: 246 TLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLG 305

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G + D+ KVF RM  R+ V+WN+M+ A A++G G +A+  +EE++  G++   +T
Sbjct: 306 MYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQIT 365

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FLS+L ACSH GLV +G  +   M + + + P  +HY   VD++GRAGLL EA  F+ +M
Sbjct: 366 FLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 424

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P++P   VW ALLGAC +H +++MG+YAA+ +F   PD   P +L+ NIY+ +G+W + A
Sbjct: 425 PMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAA 484

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           +  K MK  GV KE   SW++IE  VH FV DD  HP++  I+ +  E+   +   GYVP
Sbjct: 485 RVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVP 544

Query: 642 NKRFIL 647
           N   +L
Sbjct: 545 NTAHVL 550



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 163/313 (52%), Gaps = 13/313 (4%)

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           GL+    +H G + P    Y S + AC+  + L   R IH  L +  L  D  + ++L+ 
Sbjct: 44  GLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIH 103

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCG+V DA  +F+     D VS T ++ G+AQN    EA+ L   M++A    +   
Sbjct: 104 MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 163

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            +++L   G      +G+Q+H+L +K ++  + +V + L++MY++C  ++ +I VF R+ 
Sbjct: 164 FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 223

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +N VSWN++IA FAR  +G   L  + EM+  G   T  T+ S+  A + +G + +G  
Sbjct: 224 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-- 281

Query: 481 FLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                   H I    +  A V    + M  ++G +++AR   +RM  K D++ W  +L A
Sbjct: 282 ---RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 337

Query: 537 CSIHGDSEMGKYA 549
            + +G   +GK A
Sbjct: 338 LAQYG---LGKEA 347



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 29/448 (6%)

Query: 7   FLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSL 66
           ++   ++ P+ S+            P SST    LD       LL      G     P L
Sbjct: 14  YIHRRTSKPYTSAAHRAVPISFPSSPASSTGLRELD-------LL----HAGELAPTPRL 62

Query: 67  HASFIKTFEPFDNQNVYNVPNATV----------IWNSLLSFYLKCDQMRNAVKLFDDMP 116
           + S I     F N       +A +          + NSL+  Y KC  + +A  +FD MP
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            RD VSW  +++G+ +N       G     L   F + +  +FT +L A        + +
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARF-RPNGFTFTSLLKATGACGGCSIGE 181

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H L     ++E+V VG+AL+  Y +C        VF  +  +N ++W A+I+G  +  
Sbjct: 182 QMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKA 241

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E  L  F +M          TY S   A + + AL +GR +H  L K   +    + +
Sbjct: 242 DGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGN 301

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
            ++ MY+K GS+ DA ++F+  ++ D V+   +L   AQ G  +EA+  F ++ K GI++
Sbjct: 302 TMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQL 361

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQ-IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS- 412
             N ++  L V    +  GL K+  H   +  D+   P +++    +++  + G L+++ 
Sbjct: 362 --NQIT-FLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           I VF       +  W +++ A   H N 
Sbjct: 419 IFVFKMPMEPTAAVWGALLGACRMHKNA 446


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 183/548 (33%), Positives = 306/548 (55%), Gaps = 8/548 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELG 150
           N+L++ Y+KC  +++A  LFD MP RD +SWN M+SG+  NG    G   F   R L + 
Sbjct: 235 NALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSV- 293

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + T ++SAC+      + + IH  V   G+  +++V N+L   Y   GS    
Sbjct: 294 --DPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREA 351

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  +++++WT +ISG   N L ++ +  +  M    + P+ +T  + + AC+ L
Sbjct: 352 EKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H +  K  L S + + + L++MYSKC  ++ A  IF      + +S T I+
Sbjct: 412 GDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSII 471

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G   N    EA+ +F++ +K  ++ +   ++A L       +L  GK+IH+ ++++   
Sbjct: 472 AGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVG 530

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N L++MY +CG +  +   F+    ++  SWN ++  ++  G G   +EL++ M
Sbjct: 531 LDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQGSMVVELFDRM 589

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               V P ++TF+SLL  CS   +V +G+ +   M E + ++P  +HYACVVD++GRAG 
Sbjct: 590 VKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGE 648

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FI++MPV PD  VW ALL AC IH   ++G+ +A+ +F     S   YIL+ N+
Sbjct: 649 LQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNL 708

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+  G+W+E AK  + MKE G+  + G SW+E++ +VH+F+ DDK HPQ   I+ VL   
Sbjct: 709 YADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGF 768

Query: 631 LRLMIDEG 638
              M + G
Sbjct: 769 YEKMSEVG 776



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 142/457 (31%), Positives = 223/457 (48%), Gaps = 12/457 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+ L+ +++   + +A  +F  M  R+  SWN +V G+ + G FD     + R L +G  
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L  C         K +H  V   GYE ++ V NALIT Y KCG   S R 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M  R++I+W A+ISG  +N +  EGL+LF  M    ++P+ +T  S + AC  L  
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGD 312

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR IH  +       D+ + ++L  MY   GS  +A ++F   E  D VS T ++ G
Sbjct: 313 RRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISG 372

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  N   ++A+  +  M +  ++ D   V+AVL        L  G ++H L IK+   S 
Sbjct: 373 YEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY 432

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LINMYSKC  ++ ++ +F  +  +N +SW S+IA    +   F+AL    +MK+
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM 492

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++P  +T  + L AC+ +G +  G E     L++   +    P A     ++DM  R 
Sbjct: 493 T-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNA-----LLDMYVRC 546

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           G +  A S       K DV  W  LL   S  G   M
Sbjct: 547 GRMNTAWSQFNSQ--KKDVTSWNILLTGYSERGQGSM 581



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/494 (23%), Positives = 228/494 (46%), Gaps = 29/494 (5%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN-SLLSFYLKCDQMRNAV 109
           ++ SA+  HF+L P    SF            Y   N    WN  +   +L+    ++  
Sbjct: 1   MASSAQSPHFYLNPGKSNSF--------QSKAYKQRNVNFYWNFGIRRLFLR----KSQG 48

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
                     T   N+ + G   NG+ +          EL    +D+  F  ++  C+  
Sbjct: 49  LSVLSSSSSSTHFSNSQLHGLCANGKLEEAMKLLNSMQELRV-AVDEDVFVALVRLCEWK 107

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                   ++ +         V +GNA +  + + G+      VFG+M  RN+ +W  ++
Sbjct: 108 RAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLV 167

Query: 230 SGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
            G  +   ++E + L+ +M  +G + P+  T+   +  C G+  L  G+++H  + +   
Sbjct: 168 GGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGY 227

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + D+ + +AL+ MY KCG V+ A  +F+     D +S   ++ G+ +NG   E ++LF  
Sbjct: 228 ELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFA 287

Query: 349 MVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           M   G+ +DP++  +++V+    +     LG+ IH+ +I + F  +  V N L  MY   
Sbjct: 288 M--RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNA 345

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G   ++ K+FSRM  ++ VSW +MI+ +  +    KA++ Y  M  + V+P ++T  ++L
Sbjct: 346 GSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVL 405

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERMP 522
            AC+ +G ++ G+E  K   +   IS     Y  V    ++M  +   + +A      +P
Sbjct: 406 SACATLGDLDTGVELHKLAIKARLIS-----YVIVANNLINMYSKCKCIDKALDIFHNIP 460

Query: 523 VKPDVLVWQALLGA 536
            K +V+ W +++  
Sbjct: 461 RK-NVISWTSIIAG 473



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 185/391 (47%), Gaps = 22/391 (5%)

Query: 53  ISAKE--GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           ISA E  G   LG  +HA  I T    D            + NSL   YL     R A K
Sbjct: 304 ISACELLGDRRLGRDIHAYVITTGFAVD----------ISVCNSLTQMYLNAGSWREAEK 353

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LF  M  +D VSW TM+SG+  N   D     + R ++    + D+ +   +LSAC    
Sbjct: 354 LFSRMERKDIVSWTTMISGYEYNFLPDKAIDTY-RMMDQDSVKPDEITVAAVLSACATLG 412

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                  +H L         V V N LI  Y KC        +F  +  +NVI+WT++I+
Sbjct: 413 DLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL  N    E L    +M + L  PN++T  +++ AC+ + AL  G++IH  + +  +  
Sbjct: 473 GLRLNNRCFEALIFLRQMKMTL-QPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGL 531

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D  + +AL+DMY +CG +  AW  F  +++ D  S  ++L G+++ G     ++LF +MV
Sbjct: 532 DDFLPNALLDMYVRCGRMNTAWSQFN-SQKKDVTSWNILLTGYSERGQGSMVVELFDRMV 590

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGD 408
           K+   + P+ ++ +  + G   S  + + +       D+   P + +   ++++  + G+
Sbjct: 591 KS--RVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHYACVVDLLGRAGE 648

Query: 409 LEDSIKVFSRM--APRNSVSWNSMIAAFARH 437
           L+++ K   +M   P  +V W +++ A   H
Sbjct: 649 LQEAHKFIQKMPVTPDPAV-WGALLNACRIH 678


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 310/560 (55%), Gaps = 13/560 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   + NA  LFD+MP+RD  SWN M+SG+ ++G           +L  G   
Sbjct: 190 SLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL-----TLSNGLRA 244

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   +LSAC  +        IH      G E E+ V N LI  Y + G     +KV
Sbjct: 245 MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKV 304

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M VR++I+W ++I     N+     + LF +M L  I P+ LT +S     S L  +
Sbjct: 305 FDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDI 364

Query: 274 CEGRQIHGI-LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              R + G  L K     D+ I +A++ MY+K G V+ A  +F +    D +S   I+ G
Sbjct: 365 RACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISG 424

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           +AQNGF  EA++++  M + G EI  N  +  +VL       +L  G ++H  ++K+   
Sbjct: 425 YAQNGFASEAIEMYNIMEEEG-EIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   L +MY KCG LED++ +F ++   NSV WN++IA    HG+G KA+ L++EM
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             EGV+P  +TF++LL ACSH GLV++G    + M   + I+P  +HY C+VDM GRAG 
Sbjct: 544 LDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQ 603

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L  A  FI+ M ++PD  +W ALL AC +HG+ ++GK A+E LF  +P+    ++L++N+
Sbjct: 604 LETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNM 663

Query: 571 YSCSGRWK--ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           Y+ +G+W+  +  ++I   K  G+ K  G S +E++ +V  F   ++ HP  + ++  L 
Sbjct: 664 YASAGKWEGVDEIRSIAHGK--GLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 721

Query: 629 ELLRLMIDEGYVPNKRFILH 648
            L   +   GYVP+ RF+L 
Sbjct: 722 ALQAKLKMIGYVPDHRFVLQ 741



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 139/545 (25%), Positives = 248/545 (45%), Gaps = 55/545 (10%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSLELGF 151
           L++ Y     +  A   FD +  RD  +WN M+SG+ R G   E    F  F  S  L  
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGL-- 149

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              D  +F  +L AC      +    IHCL    G+  +V V  +LI  Y +  +  + R
Sbjct: 150 -TPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNAR 205

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            +F EM VR++ +W A+ISG  Q+   +E L L      GL   +S+T +S + AC+   
Sbjct: 206 ILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL----SNGLRAMDSVTVVSLLSACTEAG 261

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
               G  IH    K  L+S+L + + L+D+Y++ G + D  ++F+     D +S   I+ 
Sbjct: 262 DFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIK 321

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-FT 390
            +  N     A+ LF +M  + I+ D   + ++  +      +   + +    ++   F 
Sbjct: 322 AYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFL 381

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            +  + N ++ MY+K G ++ +  VF+ +   + +SWN++I+ +A++G   +A+E+Y  M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441

Query: 451 KLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           + EG +     T++S+L ACS  G + +GM+    + + + +         + DM G+ G
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTSLADMYGKCG 500

Query: 510 LLIEARSFIERMP----------------------------------VKPDVLVWQALLG 535
            L +A S   ++P                                  VKPD + +  LL 
Sbjct: 501 RLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPA--PYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           ACS  G  + G++  E +      +P+   Y  M ++Y   GR  +   A+K +K M + 
Sbjct: 561 ACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMY---GRAGQLETALKFIKSMSLQ 617

Query: 594 KETGI 598
            +  I
Sbjct: 618 PDASI 622



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 210/429 (48%), Gaps = 23/429 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V +  LLS   + G F+ G ++H+  IK          + + +   + N L+  Y +  +
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIK----------HGLESELFVSNKLIDLYAEFGR 297

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           +R+  K+FD M +RD +SWN+++  +  N +       F+   E+   ++     T+I  
Sbjct: 298 LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQ---EMRLSRIQPDCLTLISL 354

Query: 165 ACDRSELSLVS--KMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           A   S+L  +   + +       G + E++T+GNA++  Y K G   S R VF  +   +
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           VI+W  +ISG  QN    E ++++  M   G I  N  T++S + ACS   AL +G ++H
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
           G L K  L  D+ + ++L DMY KCG +EDA  +F     ++ V    ++     +G  E
Sbjct: 475 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 534

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--G 398
           +A+ LF +M+  G++ D      +L        +  G+    + +++D+   P + +   
Sbjct: 535 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEM-MQTDYGITPSLKHYGC 593

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           +++MY + G LE ++K    M+ +   S W ++++A   HGN     ++  E   E VEP
Sbjct: 594 MVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGN-VDLGKIASEHLFE-VEP 651

Query: 458 TDVTFLSLL 466
             V +  LL
Sbjct: 652 EHVGYHVLL 660



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 180/379 (47%), Gaps = 31/379 (8%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +K +H  + +    + V +   L+  Y   G+ +  R  F  ++ R+V  W  +ISG  +
Sbjct: 70  AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGR 129

Query: 235 NQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
                E ++ F    L   + P+  T+ S + AC   + + +G +IH +  K     D+ 
Sbjct: 130 AGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVY 186

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+ +YS+  +V +A  +F+     D  S   ++ G+ Q+G  +EA+ L       G
Sbjct: 187 VAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNG 241

Query: 354 IE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           +  +D   V ++L           G  IHS  IK    S  FV+N LI++Y++ G L D 
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDC 301

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL------- 465
            KVF RM  R+ +SWNS+I A+  +    +A+ L++EM+L  ++P  +T +SL       
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 466 --LHACSHV-GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
             + AC  V G   +   FL+ +T  +           VV M  + GL+  AR+    +P
Sbjct: 362 GDIRACRSVQGFTLRKGWFLEDITIGN----------AVVVMYAKLGLVDSARAVFNWLP 411

Query: 523 VKPDVLVWQALLGACSIHG 541
              DV+ W  ++   + +G
Sbjct: 412 -NTDVISWNTIISGYAQNG 429



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 135/272 (49%), Gaps = 15/272 (5%)

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ LQ+    + +H  L       ++CI + L+++Y   G+V  A   F+  +  D  + 
Sbjct: 64  CTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAW 120

Query: 327 TVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            +++ G+ + G   E ++ F + M+ +G+  D     +VL       ++  G +IH L +
Sbjct: 121 NLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLAL 177

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  F  + +V   LI++YS+   + ++  +F  M  R+  SWN+MI+ + + GN  +AL 
Sbjct: 178 KFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT 237

Query: 446 LYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           L       G+   D VT +SLL AC+  G  N+G+  + S +  H +         ++D+
Sbjct: 238 LS-----NGLRAMDSVTVVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDL 291

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
               G L + +   +RM V+ D++ W +++ A
Sbjct: 292 YAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +  V  +F   T+L   K +H+ ++ S    N  ++  L+N+Y   G++  +   F  + 
Sbjct: 54  IDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQ 113

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNK-- 477
            R+  +WN MI+ + R GN  + +  +    L  G+ P   TF S+L AC  V   NK  
Sbjct: 114 NRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIH 173

Query: 478 --GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
              ++F   M +V+         A ++ +  R   +  AR   + MPV+ D+  W A++ 
Sbjct: 174 CLALKF-GFMWDVYVA-------ASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMIS 224

Query: 536 ACSIHGDSE 544
                G+++
Sbjct: 225 GYCQSGNAK 233


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 301/544 (55%), Gaps = 7/544 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSLLS Y   D M  A +LFD+M  RD +SW+ M+ G+++ GE  M    F       
Sbjct: 173 VQNSLLSMYADND-MERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNA 231

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +LD  +   +L AC  +    + + +H +V   G + ++ VGN++I  Y KC    S 
Sbjct: 232 SIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESA 291

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K F EM  RN ++W ++ISGLV+ + + E L LF  M       + +T ++ + +C   
Sbjct: 292 FKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYF 351

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
               + + IH I+ +   + +  + ++L+D YSKC  +E AW++F+  +  D VS + ++
Sbjct: 352 VDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMI 411

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            GF   G  +EA+ LF +M +A  +  PN V+  ++L  F V   L   K  H + I+  
Sbjct: 412 AGFNHCGKPDEAIALFQEMNQA--QEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRG 469

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             +   V   +++MY+KCG++  S K F ++  +N VSW +MIAA   +G    AL L  
Sbjct: 470 LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLS 529

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EMKL G++P  VT LS+L ACSH GLV +G+ F ++M + H + P  EHY+C+VDM+ RA
Sbjct: 530 EMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRA 589

Query: 509 GLLIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           G L  A + IE+MP  ++    +W ALL AC   G+S +G  AA ++   +P S A Y L
Sbjct: 590 GKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFL 649

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
            +++Y+ SG W + A+    +K  GV    G S + +E +   FV  D+ HP+A  I GV
Sbjct: 650 ASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGV 709

Query: 627 LAEL 630
           + +L
Sbjct: 710 VEQL 713



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 138/455 (30%), Positives = 239/455 (52%), Gaps = 7/455 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T   NS+L FY+K   + +A+ +FD M  RD+VSWN M+ G L  G  D G  +F+++  
Sbjct: 70  TSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARV 129

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           + F + + ++  + + AC RS  ++   + +H  +   G+ +  +V N+L++ Y      
Sbjct: 130 IAF-EPNVSTLVLAIHAC-RSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDM 186

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMA 266
               ++F EM  R+VI+W+ +I G VQ    +  L+LF++M     I  + +T +S + A
Sbjct: 187 ERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKA 246

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+    +  GR +HG++    L  DL + ++++DMYSKC   E A++ F      + VS 
Sbjct: 247 CANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSW 306

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+ G  +     EA+ LF  M KAG   D   +  +L            K IHS++I+
Sbjct: 307 NSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIR 366

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             +  N FV N LI+ YSKC  +E + K+F R+  +++VSW++MIA F   G   +A+ L
Sbjct: 367 WGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIAL 426

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++EM     +P  VT LSLL A S V    K  ++   +     ++        ++DM  
Sbjct: 427 FQEMNQAQEKPNGVTILSLLEAFS-VSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYA 485

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + G +  +R   +++P K +++ W A++ AC ++G
Sbjct: 486 KCGEIGLSRKAFDQIPEK-NIVSWGAMIAACGMNG 519



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 164/304 (53%), Gaps = 2/304 (0%)

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           ++ +LV  ++     L G++   + GN+++  Y K G+  S   VF  MR R+ ++W  +
Sbjct: 48  TDPTLVHSILKACSSLPGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIM 107

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G +     ++GL  F +  +    PN  T + ++ AC  L A+ EG ++HG + +   
Sbjct: 108 IHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGF 167

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
                ++++L+ MY+    +E A ++F+   E D +S +V++ G+ Q G  + A+QLF++
Sbjct: 168 LDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLE 226

Query: 349 MV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           M   A IE+D   + +VL        + +G+ +H ++I      + FV N +I+MYSKC 
Sbjct: 227 MTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCD 286

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           D E + K F+ M  RN+VSWNS+I+   R     +AL L+  M   G    +VT ++LL 
Sbjct: 287 DHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQ 346

Query: 468 ACSH 471
           +C +
Sbjct: 347 SCKY 350



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 174/394 (44%), Gaps = 56/394 (14%)

Query: 67  HASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM 126
           H S  K F     +N       TV WNS++S  ++ ++   A+ LF              
Sbjct: 288 HESAFKAFNEMPCRN-------TVSWNSIISGLVRTEKHSEALSLF-------------- 326

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
                    + MG   F+          D+ +   +L +C         K IH +V   G
Sbjct: 327 ---------YSMGKAGFRA---------DEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWG 368

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
           YE    V N+LI +Y KC       K+F  ++ ++ ++W+A+I+G       +E + LF 
Sbjct: 369 YELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQ 428

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           +M+     PN +T LS + A S    L   +  HGI  +  L +++ + +A++DMY+KCG
Sbjct: 429 EMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCG 488

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            +  + + F+   E + VS   ++     NG   +A+ L  +M   G++  PN+V+  L 
Sbjct: 489 EIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLK--PNVVT-TLS 545

Query: 367 VFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR 422
           V    +  GL ++  S    +  D    P + +   +++M S+ G L  ++ +  +M  R
Sbjct: 546 VLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPER 605

Query: 423 ---NSVSWNSMIAAFARHGN-------GFKALEL 446
               +  W ++++A    GN        F+ LEL
Sbjct: 606 MRDGAGLWGALLSACRSSGNSRLGAGAAFRVLEL 639



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 16/141 (11%)

Query: 341 EAMQLFVKMVKAGIEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EA   + +M KAG ++ DP +V ++L            K   SL     F S     N +
Sbjct: 32  EACSRYHQMKKAGAQLTDPTLVHSIL------------KACSSL---PGFDSLTSTGNSV 76

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++ Y K G L+ ++ VF  M  R+SVSWN MI      G   K L  + + ++   EP  
Sbjct: 77  LDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNV 136

Query: 460 VTFLSLLHACSHVGLVNKGME 480
            T +  +HAC  +G + +G++
Sbjct: 137 STLVLAIHACRSLGAMEEGLK 157


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 172/484 (35%), Positives = 282/484 (58%), Gaps = 6/484 (1%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D ++ +  L  C + +  LV K  H L    G   +    N LI  Y KCG +   R V
Sbjct: 55  IDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLV 114

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M VR++++W  +I+G   +    + LKLF +MH    + +  T  S++ AC+   A+
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAI 174

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            E +Q+H I  KLAL S+  + +A++D+Y+KC  ++DA  +FE   E   V+ + +  G+
Sbjct: 175 NECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGY 234

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFT 390
            QNG  EEA+ LF    + G+E+    +SA+L       SL L   G Q+H++I+K  F 
Sbjct: 235 VQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA---SLALKIEGIQLHAVILKCGFH 291

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            N FV   L+++Y++CG +E +  +F+ M  +N V WN+MIA+F+RH + ++A+ L+E+M
Sbjct: 292 GNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKM 351

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  G+ P +VT+LS+L  CSH GLV KG  +   +     + P   HY+C+VD++GR+G 
Sbjct: 352 QQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGK 411

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
             EA   + +MP +P   +W +LLG+C  + +  + + AAE+LF  +PD+   ++L++N+
Sbjct: 412 TDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNV 471

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ SG W+    A K +K+ G  KE G SWIE + +VH FVV ++ HP+   I+  L E+
Sbjct: 472 YAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEI 531

Query: 631 LRLM 634
              M
Sbjct: 532 YHEM 535



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 142/564 (25%), Positives = 255/564 (45%), Gaps = 58/564 (10%)

Query: 43  NYVD---ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           N +D   IS+ L + AK     +G S H   I           + +   T+  N L++ Y
Sbjct: 53  NLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIH----------FGLVTDTLTCNILINLY 102

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC +   A  +FD M +R  VSWNTM++G+  +GE       F R    G + + + + 
Sbjct: 103 TKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTH-MSEFTL 161

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           +  + AC         K +H +      +    VG A++  Y KC        VF +M  
Sbjct: 162 SSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPE 221

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           R ++TW+++ +G VQN L+EE L LF       +     T  + + AC+ L    EG Q+
Sbjct: 222 RTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQL 281

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H ++ K     +  + ++L+D+Y++CG +E A+ +F + E  + V    ++  F+++   
Sbjct: 282 HAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHS 341

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFV- 395
            EAM LF KM + G  I PN V+  L V  V +  GL   G+   SL++ SD T  P V 
Sbjct: 342 WEAMILFEKMQQLG--IFPNEVT-YLSVLSVCSHAGLVEKGRHYFSLLM-SDRTVEPNVL 397

Query: 396 -NNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEE--MK 451
             + ++++  + G  +++ ++ ++M    + S W S++ +  R+ N  +   +  E   +
Sbjct: 398 HYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGS-CRNYNNIRLARIAAEQLFQ 456

Query: 452 LEGVEPTDVTFLSLLHACS----HVGLVNK-----------GMEFLKSMTEVHRISPRAE 496
           LE     +   LS ++A S    +V +  K           G  ++++  +VH       
Sbjct: 457 LEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGER 516

Query: 497 HYACVVDMVGR-AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS--EMGKYAAEKL 553
            +  + D+  +   +  E R F  R  ++ D+           +H +   E+ K+ +EKL
Sbjct: 517 KHPRITDIYNKLEEIYHEMRKFARRTSIECDLH---------DVHAEQKEELLKHHSEKL 567

Query: 554 FLA----QPDSPAPYILMANIYSC 573
            L+       S  P I+  N+  C
Sbjct: 568 ALSFGLISLPSNIPIIIHKNLRIC 591


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 184/588 (31%), Positives = 322/588 (54%), Gaps = 3/588 (0%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +  S H   + T        + +  + + + + L+  Y+KC  +  A KLFD++P R  V
Sbjct: 8   IAQSAHTKSLTTLRAVHTNVIKSGFSYSFLGHKLIDGYIKCGSLAEARKLFDELPSRHIV 67

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           +WN+M+S  + +G+      F+   L  G    D  +F+ I  A  +  L    +  H L
Sbjct: 68  TWNSMISSHISHGKSKEAVEFYGNMLMEGVLP-DAYTFSAISKAFSQLGLIRHGQRAHGL 126

Query: 182 VYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
             + G E  +  V +AL+  Y K         VF  +  ++V+ +TA+I G  Q+ L  E
Sbjct: 127 AVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGE 186

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            LK+F  M    + PN  T    ++ C  L  L  G+ IHG++ K  L+S +  +++L+ 
Sbjct: 187 ALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLT 246

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYS+C  +ED+ ++F   +  + V+ T  +VG  QNG EE A+ +F +M++  I  +P  
Sbjct: 247 MYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFT 306

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +S++L        L +G+QIH++ +K     N +    LIN+Y KCG+++ +  VF  + 
Sbjct: 307 LSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLT 366

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
             + V+ NSMI A+A++G G +ALEL+E +K  G+ P  VTF+S+L AC++ GLV +G +
Sbjct: 367 ELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQ 426

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
              S+   H I    +H+ C++D++GR+  L EA   IE +   PDV++W+ LL +C IH
Sbjct: 427 IFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIH 485

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           G+ EM +    K+    P     +IL+ N+Y+ +G+W +  +    ++++ + K   +SW
Sbjct: 486 GEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSW 545

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++++++VH+F+  D  HP++  I  +L  L++ +   GY PN RF+L 
Sbjct: 546 VDVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQ 593


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 300/542 (55%), Gaps = 7/542 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLLS Y   D M  A +LFD+M  RD +SW+ M+ G+++ GE  M    F         
Sbjct: 189 NSLLSMYADND-MERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASI 247

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +LD  +   +L AC  +    + + +H +V   G + ++ VGN++I  Y KC    S  K
Sbjct: 248 ELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFK 307

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F EM  RN ++W ++ISGLV+ + + E L LF  M       + +T ++ + +C     
Sbjct: 308 AFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVD 367

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
             + + IH I+ +   + +  + ++L+D YSKC  +E AW++F+  +  D VS + ++ G
Sbjct: 368 PFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAG 427

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           F   G  +EA+ LF +M +A  +  PN V+  ++L  F V   L   K  H + I+    
Sbjct: 428 FNHCGKPDEAIALFQEMNQA--QEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLA 485

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +   V   +++MY+KCG++  S K F ++  +N VSW +MIAA   +G    AL L  EM
Sbjct: 486 AEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEM 545

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           KL G++P  VT LS+L ACSH GLV +G+ F ++M + H + P  EHY+C+VDM+ RAG 
Sbjct: 546 KLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGK 605

Query: 511 LIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           L  A + IE+MP  ++    +W ALL AC   G+S +G  AA ++   +P S A Y L +
Sbjct: 606 LNSAMNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLAS 665

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ SG W + A+    +K  GV    G S + +E +   FV  D+ HP+A  I GV+ 
Sbjct: 666 SMYAASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVE 725

Query: 629 EL 630
           +L
Sbjct: 726 QL 727



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 251/481 (52%), Gaps = 17/481 (3%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S+HAS +K  + FD+         T   NS+L FY+K   + +A+ +FD M  RD+VS
Sbjct: 68  GKSIHASLLK--QGFDS--------LTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVS 117

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM-IHCL 181
           WN M+ G L  G  D G  +F+++  + F + + ++  + + AC RS  ++   + +H  
Sbjct: 118 WNIMIHGHLSRGASDKGLWWFRQARVIAF-EPNVSTLVLAIHAC-RSLGAMEEGLKMHGY 175

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           +   G+ +  +V N+L++ Y          ++F EM  R+VI+W+ +I G VQ    +  
Sbjct: 176 IIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMA 234

Query: 242 LKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           L+LF++M     I  + +T +S + AC+    +  GR +HG++    L  DL + ++++D
Sbjct: 235 LQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIID 294

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYSKC   E A++ F      + VS   I+ G  +     EA+ LF  M KAG   D   
Sbjct: 295 MYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVT 354

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +  +L            K IHS++I+  +  N FV N LI+ YSKC  +E + K+F R+ 
Sbjct: 355 LVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLK 414

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +++VSW++MIA F   G   +A+ L++EM     +P  VT LSLL A S V    K  +
Sbjct: 415 TKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFS-VSADLKRSK 473

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           +   +     ++        ++DM  + G +  +R   +++P K +++ W A++ AC ++
Sbjct: 474 WAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEK-NIVSWGAMIAACGMN 532

Query: 541 G 541
           G
Sbjct: 533 G 533



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/312 (31%), Positives = 167/312 (53%), Gaps = 5/312 (1%)

Query: 162 ILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           IL AC  S L +   K IH  +   G++   + GN+++  Y K G+  S   VF  MR R
Sbjct: 56  ILKAC--SSLPVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSR 113

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           + ++W  +I G +     ++GL  F +  +    PN  T + ++ AC  L A+ EG ++H
Sbjct: 114 DSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMH 173

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
           G + +        ++++L+ MY+    +E A ++F+   E D +S +V++ G+ Q G  +
Sbjct: 174 GYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAK 232

Query: 341 EAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            A+QLF++M   A IE+D   + +VL        + +G+ +H ++I      + FV N +
Sbjct: 233 MALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSI 292

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           I+MYSKC D E + K F+ M  RN+VSWNS+I+   R     +AL L+  M   G    +
Sbjct: 293 IDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADE 352

Query: 460 VTFLSLLHACSH 471
           VT ++LL +C +
Sbjct: 353 VTLVNLLQSCKY 364



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 9/221 (4%)

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + ACS L     G+ IH  L K    S     ++++D Y K G+++ A  +F+     
Sbjct: 55  SILKACSSLPVR-HGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSR 113

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GK 378
           D VS  +++ G    G  ++ +  F +     I  +PN+ + VL +     SLG    G 
Sbjct: 114 DSVSWNIMIHGHLSRGASDKGLWWFRQARV--IAFEPNVSTLVLAIHAC-RSLGAMEEGL 170

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           ++H  II+S F   P V N L++MY+   D+E + ++F  M  R+ +SW+ MI  + + G
Sbjct: 171 KMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTG 229

Query: 439 NGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKG 478
               AL+L+ EM     +E   +T +S+L AC++ G ++ G
Sbjct: 230 EAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMG 270



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 341 EAMQLFVKMVKAGIEI-DPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNN 397
           EA   + +M KAG ++ DP +V ++L      +SL +  GK IH+ ++K  F S     N
Sbjct: 32  EACSRYHQMKKAGAQLTDPTLVHSILKAC---SSLPVRHGKSIHASLLKQGFDSLTSTGN 88

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            +++ Y K G L+ ++ VF  M  R+SVSWN MI      G   K L  + + ++   EP
Sbjct: 89  SVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEP 148

Query: 458 TDVTFLSLLHACSHVGLVNKGMEF 481
              T +  +HAC  +G + +G++ 
Sbjct: 149 NVSTLVLAIHACRSLGAMEEGLKM 172


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 180/455 (39%), Positives = 267/455 (58%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-LGLI 253
           N LI  Y + G   S +K+F EM  RN+ TW A+I+GL Q +  ++ L LF +M+ LG +
Sbjct: 132 NILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL 191

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+  T  S +  C+GL++L  G+++H  L K   +    + S+L  MY K GS+ D  +
Sbjct: 192 -PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEK 250

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           + +       V+   ++ G AQNG  EE +  +  M  AG   D     +VL       +
Sbjct: 251 LIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELAT 310

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           LG G+QIH+ +IK+  +S   V + LI+MYS+ G LEDSIK F      + V W+SMIAA
Sbjct: 311 LGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAA 370

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG G +ALEL+ +M+   +E  +VTFLSLL+ACSH GL  KG E+   M + +++ P
Sbjct: 371 YGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKP 430

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           R EHY CVVD++GRAG L EA   I  MPV+PD ++W+ LL AC +H ++EM +  +E++
Sbjct: 431 RIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEI 490

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P   A Y+L++NI++ +  W   ++  K M++  V KE GISW+E++  VH F + 
Sbjct: 491 IKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMG 550

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           DK HPQ   I   L EL+  +   GYVP    +LH
Sbjct: 551 DKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLH 585



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 209/409 (51%), Gaps = 19/409 (4%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFD-MGFG 141
           N+P   V+ +N L++ YL+   + +A KLFD+M  R+  +WN M++G L   EF+     
Sbjct: 122 NMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAG-LTQFEFNKQALS 180

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            FK    LGF   D+ +   +L  C      L  + +H  +  CG+E    VG++L   Y
Sbjct: 181 LFKEMYGLGFLP-DEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 239

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            K GS S G K+   M +R V+ W  +I+G  QN   EE L  +  M +    P+ +T++
Sbjct: 240 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 299

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + ACS L  L +G+QIH  + K    S L + S+L+ MYS+ G +ED+ + F   E  
Sbjct: 300 SVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENF 359

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GK 378
           D V  + ++  +  +G  EEA++LF +M    ++++ N V+ +  ++    S GL   G 
Sbjct: 360 DVVLWSSMIAAYGFHGRGEEALELFHQM--EDLKMEANEVTFLSLLYACSHS-GLKEKGT 416

Query: 379 QIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFA 435
           +   L++K  +   P + +   ++++  + G LE++  +   M  + + + W +++AA  
Sbjct: 417 EYFDLMVKK-YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACK 475

Query: 436 RHGNGFKALELYEE-MKLEGVEPTDVTFLSLLHACS----HVGLVNKGM 479
            H     A  + EE +KL+ ++      LS +HA +    +V  + K M
Sbjct: 476 LHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAM 524



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 167/357 (46%), Gaps = 46/357 (12%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS------ 307
           +P+  ++L  + +C  L +L  G+Q+H ++       D  I + L++ YSK G       
Sbjct: 61  DPSLFSHL--LQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLV 118

Query: 308 -------------------------VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
                                    +E A ++F+   E +  +   ++ G  Q  F ++A
Sbjct: 119 LFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQA 178

Query: 343 MQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           + LF +M   G   D   + +VL G  G+  SL  G+++H+ ++K  F  +  V + L +
Sbjct: 179 LSLFKEMYGLGFLPDEFTLGSVLRGCAGL-RSLLAGQEVHACLLKCGFELSSVVGSSLAH 237

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY K G L D  K+   M  R  V+WN++IA  A++G   + L  Y  MK+ G  P  +T
Sbjct: 238 MYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKIT 297

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIER 520
           F+S+L ACS +  + +G +    + +    S  A   + ++ M  R+G L ++ ++F++R
Sbjct: 298 FVSVLSACSELATLGQGQQIHAEVIKAGASSVLAV-VSSLISMYSRSGCLEDSIKAFVDR 356

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYSCS 574
                DV++W +++ A   HG  E     A +LF    D          ++ +Y+CS
Sbjct: 357 ENF--DVVLWSSMIAAYGFHGRGE----EALELFHQMEDLKMEANEVTFLSLLYACS 407


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 178/571 (31%), Positives = 310/571 (54%), Gaps = 36/571 (6%)

Query: 112 FDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +D P  +  +  WN +++ + +  +       + +  ++ F ++D      +L AC + 
Sbjct: 79  LNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDF-EVDNFMAPSVLKACGQV 137

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
             + + K IH  V   G + +V VGNAL+  Y +C      R VF +M  R+V++W+ +I
Sbjct: 138 SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMI 197

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
             L +N+ ++  L+L  +M+   + P+ +  +S V   +    +  G+ +H  + + +  
Sbjct: 198 RSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNN 257

Query: 290 SDLCI--ESALMDMYSKCG-------------------------------SVEDAWQIFE 316
             + +   +AL+DMY+KCG                                +E+A  +F+
Sbjct: 258 EHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFD 317

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
             +  D +  T +L  +AQ    ++A  LF +M  +G+      + ++L +  V  +L L
Sbjct: 318 STQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDL 377

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK +HS I K     +  +N  L++MY+KCGD+  + ++F     R+   WN++I  FA 
Sbjct: 378 GKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 437

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           HG G +AL+++ EM+ +GV+P D+TF+ LLHACSH GLV +G +  + M     + P+ E
Sbjct: 438 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 497

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HY C+VD++GRAGLL EA   I+ MP+KP+ +VW AL+ AC +H + ++G+ AA +L   
Sbjct: 498 HYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 557

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +P++    +LM+NIY+ + RW + A   K MK +G+ KE G S IE+   VH F++ D+ 
Sbjct: 558 EPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQS 617

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           HPQ   I+ +LAE+ R + + GYVP+   +L
Sbjct: 618 HPQIRRINEMLAEMRRKLNEAGYVPDTSTVL 648



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/418 (25%), Positives = 199/418 (47%), Gaps = 52/418 (12%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y +C  +  A  +FD M  RD VSW+TM+    RN EFDM     +   E+ 
Sbjct: 161 VGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIR---EMN 217

Query: 151 FYQL---DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE--VTVGNALITSYFKCG 205
           F Q+   + A  +++    D + + +  K +H  V      E   V    AL+  Y KCG
Sbjct: 218 FMQVRPSEVAMVSMVNLFADTANMRM-GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCG 276

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE------------------------- 240
                R++F  +  + V++WTA+I+G +++   EE                         
Sbjct: 277 HLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQ 336

Query: 241 ------GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
                    LF +M    + P  +T +S +  C+   AL  G+ +H  + K  ++ D  +
Sbjct: 337 ANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCIL 396

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +AL+DMY+KCG +  A ++F  A   D      I+ GFA +G+ EEA+ +F +M + G+
Sbjct: 397 NTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV 456

Query: 355 EIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDL 409
           +  PN ++  +G+    +  GL   GK++   ++ + F   P + +   ++++  + G L
Sbjct: 457 K--PNDIT-FIGLLHACSHAGLVTEGKKLFEKMVHT-FGLVPQIEHYGCMVDLLGRAGLL 512

Query: 410 EDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           +++ ++   M  + N++ W +++AA   H N  +  EL     LE +EP +  +  L+
Sbjct: 513 DEAHEMIKSMPIKPNTIVWGALVAACRLHKNP-QLGELAATQLLE-IEPENCGYNVLM 568



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + LL + AK GH  L   L       F     + V       V W ++++  ++ +++  
Sbjct: 266 TALLDMYAKCGHLGLARQL-------FNGLTQKTV-------VSWTAMIAGCIRSNRLEE 311

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A  LFD    RD + W  M+S + +    D  F  F +    G  +  + +   +LS C 
Sbjct: 312 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGV-RPTKVTIVSLLSLCA 370

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
            +    + K +H  +     E +  +  AL+  Y KCG  ++  ++F E   R++  W A
Sbjct: 371 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 430

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKL 286
           +I+G   +   EE L +F +M    + PN +T++  + ACS    + EG+++   ++   
Sbjct: 431 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 490

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            L   +     ++D+  + G +++A ++ +
Sbjct: 491 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIK 520


>gi|326526571|dbj|BAJ97302.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 851

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 314/562 (55%), Gaps = 15/562 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + N+L+  Y KC ++ +A + F + P    VSWN M+  + RN E    FG  +  +  E
Sbjct: 207 VGNALVDMYAKCGELADAERAFPEAP--SVVSWNVMLGAYTRNREAGAAFGLLRDMQIKE 264

Query: 149 LGFYQLDQASFTIILSACD-RSELSLVSKMIHCLVYLCGYEEEV-TVGNALITSYFKCGS 206
            G    D+ +   +L AC   +ELS + + +H      G +     V NAL+ +Y +CG 
Sbjct: 265 HGSVPADEITVLSVLPACSGPTELSRL-RELHAFTVRRGLDAASDKVPNALVAAYGRCGR 323

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVM 265
                +VF ++R + V +W  +IS   Q Q     ++LF++M     + P+  +  S +M
Sbjct: 324 LLHADRVFTDIRRKTVSSWNTLISAHAQ-QNTAAAIELFIQMTNACGLKPDGFSIGSLLM 382

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED-AWQIFEFAEELDGV 324
           AC+  + L   +  HG + +  L+ D  I ++L+  Y +C   E  A  +F+  EE   V
Sbjct: 383 ACADPKHLLHVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEV 442

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHS 382
               ++ G++QNG   E++QLF +M         +++SA   +      +S+ LGK++H 
Sbjct: 443 LWIAMISGYSQNGLPGESLQLFREMQSVEGHCS-SVISATSALMACSELSSVRLGKEMHC 501

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNGF 441
             +K+D   +PF+++ LI+MYSKCG +ED+   F R+  R++ VSW +MI  +A +G G 
Sbjct: 502 FALKADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNGLGR 561

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM-TEVHRISPRAEHYAC 500
           +A+ELY +M+ EG+EP + T+L LL AC H G++ +G+ F   M    H+I  + EHY+C
Sbjct: 562 EAVELYGKMRREGMEPDEFTYLGLLMACGHAGMLEEGLRFFDEMRNHHHKIEVKLEHYSC 621

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           V+ M+ RAG   +A + +  MP +PD  +  ++L AC IHG++E+G   AE+L   +PD 
Sbjct: 622 VIGMLSRAGRFADAVALMAEMPQEPDAKILSSVLSACHIHGEAELGSDVAERLLELEPDK 681

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              Y+L +N+Y+ S RW +  K  K +++ G+ KE G SWI++  +V+SFV  +  HP+ 
Sbjct: 682 AEHYVLASNMYAGSRRWDDMRKVRKMLRDAGIAKEPGCSWIDVAGKVYSFVAGENPHPEM 741

Query: 621 DTIHGVLAELLRLMIDEGYVPN 642
           + + G+   L   + + GYVP+
Sbjct: 742 EQVRGMWRSLEERIREIGYVPD 763



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 229/484 (47%), Gaps = 32/484 (6%)

Query: 84  NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFG 141
            +P    + NSL+S Y +C ++ +A K+F  +P   R+ VSWN +++    +G+   G  
Sbjct: 98  GLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSWNALMAAL--SGDPRRGLE 155

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F+  L      +D+A+   +L  C     S   + +H L    G++    VGNAL+  Y
Sbjct: 156 LFRDCLVAVGGMVDEATLVTVLPMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMY 215

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL---GLINPNSL 258
            KCG  +   + F E    +V++W  ++    +N+       L   M +   G +  + +
Sbjct: 216 AKCGELADAERAFPE--APSVVSWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEI 273

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFE 316
           T LS + ACSG   L   R++H    +  L   SD  + +AL+  Y +CG +  A ++F 
Sbjct: 274 TVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDK-VPNALVAAYGRCGRLLHADRVFT 332

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLG 375
                   S   ++   AQ      A++LF++M  A G++ D   + ++L        L 
Sbjct: 333 DIRRKTVSSWNTLISAHAQQN-TAAAIELFIQMTNACGLKPDGFSIGSLLMACADPKHLL 391

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV-FSRMAPRNSVSWNSMIAAF 434
             K  H  I+++    +  +   L++ Y +C   E   +V F  M  +  V W +MI+ +
Sbjct: 392 HVKATHGFILRNGLERDTVIRASLLSAYIRCSRTEYLARVLFDAMEEKGEVLWIAMISGY 451

Query: 435 ARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +++G   ++L+L+ EM+ +EG   + ++  S L ACS +  V  G        E+H  + 
Sbjct: 452 SQNGLPGESLQLFREMQSVEGHCSSVISATSALMACSELSSVRLG-------KEMHCFAL 504

Query: 494 RAE------HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
           +A+        + ++DM  + G + +AR+F +R+  +   + W A++   +++G   +G+
Sbjct: 505 KADLCDDPFLSSSLIDMYSKCGFVEDARTFFDRLKARDAKVSWTAMITGYAVNG---LGR 561

Query: 548 YAAE 551
            A E
Sbjct: 562 EAVE 565



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM--RVRNVITW 225
           R   +   + +H L    G   +  VGN+L++ Y +CG      KVFG +    RN+++W
Sbjct: 80  RVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVEDAEKVFGGIPDAARNIVSW 139

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHL---GLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
            A+++ L  +     GL+LF    +   G+++  +L  ++ +  C+ L     GR +HG+
Sbjct: 140 NALMAALSGDP--RRGLELFRDCLVAVGGMVDEATL--VTVLPMCAALGWSETGRAVHGL 195

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             K    +   + +AL+DMY+KCG + DA + F  A  +  VS  V+L  + +N     A
Sbjct: 196 AAKSGWDAPARVGNALVDMYAKCGELADAERAFPEAPSV--VSWNVMLGAYTRNREAGAA 253

Query: 343 MQLFVKMV---KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNG 398
             L   M       +  D   V +VL      T L   +++H+  ++     ++  V N 
Sbjct: 254 FGLLRDMQIKEHGSVPADEITVLSVLPACSGPTELSRLRELHAFTVRRGLDAASDKVPNA 313

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEP 457
           L+  Y +CG L  + +VF+ +  +   SWN++I+A A+  N   A+EL+ +M    G++P
Sbjct: 314 LVAAYGRCGRLLHADRVFTDIRRKTVSSWNTLISAHAQQ-NTAAAIELFIQMTNACGLKP 372

Query: 458 TDVTFLSLLHACS 470
              +  SLL AC+
Sbjct: 373 DGFSIGSLLMACA 385



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 150/320 (46%), Gaps = 36/320 (11%)

Query: 253 INPNSLTYLSSVMACSGLQ--ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           I P+  T   +  +C  L+  A   GRQ+H +  KL L  D  + ++L+ MY +CG VED
Sbjct: 62  IAPDRFTLPPAARSCGFLRVGAAAAGRQVHALAAKLGLPGDPFVGNSLVSMYGRCGRVED 121

Query: 311 AWQIF----EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK-MVKAGIEIDPNMVSAVL 365
           A ++F    + A  +  VS   ++   A +G     ++LF   +V  G  +D   +  VL
Sbjct: 122 AEKVFGGIPDAARNI--VSWNALMA--ALSGDPRRGLELFRDCLVAVGGMVDEATLVTVL 177

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
            +         G+ +H L  KS + +   V N L++MY+KCG+L D+ + F   AP + V
Sbjct: 178 PMCAALGWSETGRAVHGLAAKSGWDAPARVGNALVDMYAKCGELADAERAFPE-AP-SVV 235

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTD-VTFLSLLHACSHVGLVNKGMEFL 482
           SWN M+ A+ R+     A  L  +M+++  G  P D +T LS+L ACS       G   L
Sbjct: 236 SWNVMLGAYTRNREAGAAFGLLRDMQIKEHGSVPADEITVLSVLPACS-------GPTEL 288

Query: 483 KSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             + E+H  + R    A        +V   GR G L+ A      +  K  V  W  L+ 
Sbjct: 289 SRLRELHAFTVRRGLDAASDKVPNALVAAYGRCGRLLHADRVFTDIRRK-TVSSWNTLIS 347

Query: 536 ACSIHGDSEMGKYAAEKLFL 555
           A      ++    AA +LF+
Sbjct: 348 A-----HAQQNTAAAIELFI 362


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 306/563 (54%), Gaps = 8/563 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N LL   L     + A  +F   P  +   +NT++ G + N  F      +    +
Sbjct: 35  TYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQ 94

Query: 149 LGFYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            GF   D  +F  +L AC R      V   +H LV   G++ +V V   L+  Y K G  
Sbjct: 95  HGFAP-DNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFL 153

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  RKVF E+  +NV++WTA+I G +++  + E L LF  +    + P+S T +  + AC
Sbjct: 154 TDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYAC 213

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S +  L  GR I G + +     ++ + ++L+DMY+KCGS+E+A ++F+   E D V  +
Sbjct: 214 SRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWS 273

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLI 384
            ++ G+A NG  +EA+ +F +M +  +  D     A++GVF   + LG   LG     L+
Sbjct: 274 ALIQGYASNGMPKEALDVFFEMQRENVRPD---CYAMVGVFSACSRLGALELGNWARGLM 330

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
              +F SNP +   LI+ Y+KCG +  + +VF  M  ++ V +N++I+  A  G+   A 
Sbjct: 331 DGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAF 390

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            ++ +M   G++P   TF+ LL  C+H GLV+ G  +   M+ V  ++P  EHY C+VD+
Sbjct: 391 GVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDL 450

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
             RAGLL+EA+  I  MP++ + +VW ALLG C +H D+++ ++  ++L   +P +   Y
Sbjct: 451 QARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHY 510

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIYS S RW E  K    + + G+ K  G SW+E++  VH F+V D  HP +  I+
Sbjct: 511 VLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIY 570

Query: 625 GVLAELLRLMIDEGYVPNKRFIL 647
             L  L + + + GY P   F+L
Sbjct: 571 EKLESLFKDLREAGYNPTTEFVL 593



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 204/436 (46%), Gaps = 20/436 (4%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           DN+     L + +    +FH+G SLH+  IKT   +D            +   L+  Y K
Sbjct: 100 DNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWD----------VFVKTGLVCLYSK 149

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
              + +A K+FD++P ++ VSW  ++ G++ +G F    G F+  LE+G  + D  +   
Sbjct: 150 NGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGL-RPDSFTLVR 208

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL AC R       + I   +   G    V V  +L+  Y KCGS    R+VF  M  ++
Sbjct: 209 ILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKD 268

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+ W+A+I G   N + +E L +F +M    + P+    +    ACS L AL  G    G
Sbjct: 269 VVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARG 328

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           ++      S+  + +AL+D Y+KCGSV  A ++F+     D V    ++ G A  G    
Sbjct: 329 LMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGA 388

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN-- 397
           A  +F +MVK G++ D N     +G+    T  GL    H     + S F+  P + +  
Sbjct: 389 AFGVFGQMVKVGMQPDGN---TFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYG 445

Query: 398 GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGV 455
            ++++ ++ G L ++  +   M    NS+ W +++     H +   A  + +++ +LE  
Sbjct: 446 CMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPW 505

Query: 456 EPTDVTFLSLLHACSH 471
                  LS +++ SH
Sbjct: 506 NSGHYVLLSNIYSASH 521



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 187/388 (48%), Gaps = 5/388 (1%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +K  HCL+   G  ++  + N L+ S     ++     VF +    N+  +  +I G+V 
Sbjct: 19  AKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVS 78

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQSDLC 293
           N  + + + ++  M      P++ T+   + AC+ L      G  +H ++ K     D+ 
Sbjct: 79  NDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVF 138

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           +++ L+ +YSK G + DA ++F+   E + VS T I+ G+ ++G   EA+ LF  +++ G
Sbjct: 139 VKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMG 198

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           +  D   +  +L        L  G+ I   + +S    N FV   L++MY+KCG +E++ 
Sbjct: 199 LRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEAR 258

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           +VF  M  ++ V W+++I  +A +G   +AL+++ EM+ E V P     + +  ACS +G
Sbjct: 259 RVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLG 318

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +  G  + + + +             ++D   + G + +A+   + M  K D +V+ A+
Sbjct: 319 ALELG-NWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRK-DCVVFNAV 376

Query: 534 LGACSI--HGDSEMGKYAAEKLFLAQPD 559
           +   ++  H  +  G +        QPD
Sbjct: 377 ISGLAMCGHVGAAFGVFGQMVKVGMQPD 404



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 143/309 (46%), Gaps = 8/309 (2%)

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL++L + +Q H +L +L L  D  + + L+       + + A  +F      +      
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKS 387
           ++ G   N    +A+ ++  M + G   D      VL     +     +G  +HSL+IK+
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F  + FV  GL+ +YSK G L D+ KVF  +  +N VSW ++I  +   G   +AL L+
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             +   G+ P   T + +L+ACS VG +  G      M E   +         +VDM  +
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVG-NVFVATSLVDMYAK 250

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP--YI 565
            G + EAR   + M V+ DV+ W AL+   + +G   M K A +  F  Q ++  P  Y 
Sbjct: 251 CGSMEEARRVFDGM-VEKDVVCWSALIQGYASNG---MPKEALDVFFEMQRENVRPDCYA 306

Query: 566 LMANIYSCS 574
           ++    +CS
Sbjct: 307 MVGVFSACS 315



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 47/231 (20%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           SL   KQ H L+++     + ++ N L+         + +  VF++    N   +N++I 
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS------HVGL------VNKGME 480
               +     A+ +Y  M+  G  P + TF  +L AC+      HVGL      +  G +
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 481 ---FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
              F+K+                +V +  + G L +AR   + +P K +V+ W A+    
Sbjct: 135 WDVFVKTG---------------LVCLYSKNGFLTDARKVFDEIPEK-NVVSWTAI---- 174

Query: 538 SIHGDSEMGKYA-AEKLF---LAQPDSPAPYILMANIYSC-------SGRW 577
            I G  E G +  A  LF   L     P  + L+  +Y+C       SGRW
Sbjct: 175 -ICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRW 224


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 302/548 (55%), Gaps = 7/548 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y+KC  +  A  +FD MP RD +SWN M+SG+  NG    G   F   ++    
Sbjct: 246 NALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPV- 304

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T +++AC+      + + IH  V    +  + ++ N+LI  Y   G       
Sbjct: 305 DPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAET 364

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF     R++++WTA+ISG     + ++ L+ +  M    I P+ +T    + ACS L  
Sbjct: 365 VFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCN 424

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G  +H +  +  L S   + ++L+DMY+KC  ++ A +IF    E + VS T I++G
Sbjct: 425 LDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILG 484

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              N    EA+  F +M++    + PN V+   VL       +L  GK+IH+  +++  +
Sbjct: 485 LRINNRCFEALFFFREMIR---RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVS 541

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N +++MY +CG +E + K F  +      SWN ++  +A  G G  A EL++ M
Sbjct: 542 FDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQRM 600

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               V P +VTF+S+L ACS  G+V +G+E+  SM   + I P  +HYACVVD++GR+G 
Sbjct: 601 VESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGK 660

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA  FI++MP+KPD  VW ALL +C IH   E+G+ AAE +F     S   YIL++N+
Sbjct: 661 LEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNL 720

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G+W + A+  K M++ G+  + G SW+E++  VH+F+  D  HPQ   I+ +L   
Sbjct: 721 YADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERF 780

Query: 631 LRLMIDEG 638
            + M + G
Sbjct: 781 YKKMKEAG 788



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/490 (30%), Positives = 243/490 (49%), Gaps = 22/490 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS +++   + +A  +F  M  R+  SWN +V G+ + G FD     + R L +G  
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGV- 203

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L  C      +  + IH  V   G+E +V V NALIT Y KCG  ++ R 
Sbjct: 204 KPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARL 263

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF +M  R+ I+W A+ISG  +N +  EGL+LF  M    ++P+ +T  S + AC  L  
Sbjct: 264 VFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGD 323

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GRQIHG + +     D  I ++L+ MYS  G +E+A  +F   E  D VS T ++ G
Sbjct: 324 DRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISG 383

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +      ++A++ +  M   GI  D   ++ VL       +L +G  +H +  +    S 
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSY 443

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY+KC  ++ ++++F     +N VSW S+I     +   F+AL  + EM +
Sbjct: 444 SIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-I 502

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++P  VT + +L AC+ +G +  G E     L++        P A     ++DM  R 
Sbjct: 503 RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNA-----ILDMYVRC 557

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA-AEKLFLAQPD---SPAPY 564
           G +  A  + +   V  +V  W  LL      G +E GK A A +LF    +   SP   
Sbjct: 558 GRMEYA--WKQFFSVDHEVTSWNILLT-----GYAERGKGAHATELFQRMVESNVSPNEV 610

Query: 565 ILMANIYSCS 574
             ++ + +CS
Sbjct: 611 TFISILCACS 620



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 179/348 (51%), Gaps = 1/348 (0%)

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G  D    +     EL     D A +  ++  C+          ++  V +      + +
Sbjct: 85  GNLDRAMSYLDSMHELRIPVEDDA-YVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQL 143

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
           GNAL++ + + G+      VFG M  RN+ +W  ++ G  +  L++E L L+ +M    +
Sbjct: 144 GNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGV 203

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P+  T+   +  C G+  L  GR+IH  + +   +SD+ + +AL+ MY KCG V  A  
Sbjct: 204 KPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARL 263

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F+     D +S   ++ G+ +NG   E ++LF  M+K  ++ D   +++V+    +   
Sbjct: 264 VFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGD 323

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
             LG+QIH  +++++F  +P ++N LI MYS  G +E++  VFSR   R+ VSW +MI+ 
Sbjct: 324 DRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISG 383

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +       KALE Y+ M+ EG+ P ++T   +L ACS +  ++ GM  
Sbjct: 384 YENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNL 431



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 145/295 (49%), Gaps = 14/295 (4%)

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           MH   I      Y++ +  C   +A  EG +++  +        L + +AL+ M+ + G+
Sbjct: 97  MHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGN 156

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           + DAW +F   E+ +  S  V++ G+A+ G  +EA+ L+ +M+  G++ D      VL  
Sbjct: 157 LVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRT 216

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
            G   +L  G++IH  +I+  F S+  V N LI MY KCGD+  +  VF +M  R+ +SW
Sbjct: 217 CGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISW 276

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           N+MI+ +  +G   + L L+  M    V+P  +T  S++ AC  +G    G        +
Sbjct: 277 NAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLG-------RQ 329

Query: 488 VHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +H    R E       +  ++ M    GL+ EA +   R   + D++ W A++  
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECR-DLVSWTAMISG 383



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +LS  A+ G    G  +HA  ++T   FD      +PNA      +L  Y++C
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGF----MPNA------ILDMYVRC 557

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M  A K F  +   +  SWN +++G+   G+       F+R +E      ++ +F  I
Sbjct: 558 GRMEYAWKQFFSVD-HEVTSWNILLTGYAERGKGAHATELFQRMVESNV-SPNEVTFISI 615

Query: 163 LSACDRS 169
           L AC RS
Sbjct: 616 LCACSRS 622


>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 186/563 (33%), Positives = 300/563 (53%), Gaps = 14/563 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N  L   +K   + NA ++FD M  +D +SW T++SG++   +       FK        
Sbjct: 60  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 119

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           ++D    ++   AC  +      +++H      G    V VG+AL+  Y K G    GR+
Sbjct: 120 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRR 179

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM +RNV++WTA+I+GLV+    +E L  F +M    +  +S T+  ++ AC+   A
Sbjct: 180 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 239

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IH    K        + + L  MY+KCG +E    +FE     D VS T I+  
Sbjct: 240 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 299

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
             Q G EE A+Q F++M ++ +  +    +AV+        +  G+Q+H+LI+     ++
Sbjct: 300 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 359

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ MY+KCG L  S  +F  M  R+ VSW+++IA +++ G+  +A EL   M++
Sbjct: 360 LSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRM 419

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF--------LKSMTEVHRISPRAEHYACVVDM 504
           EG +PT+    S+L AC ++ ++  G +         L+     ++ISP  EHY C++D+
Sbjct: 420 EGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDL 479

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + RAG L +A   IE MP   D +VW  LL AC +HGD E G+  AE++   +P+    +
Sbjct: 480 LCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTH 539

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           I +ANIY+  G+W+E A   K MK  GV KE G SWI+++  V +FV  D+ HPQ + I+
Sbjct: 540 ITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIY 599

Query: 625 GVL------AELLRLMIDEGYVP 641
            +L       EL   + + G++P
Sbjct: 600 NMLDLLASRTELADCVQETGFLP 622



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 186/387 (48%), Gaps = 21/387 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +KT           + N+  + ++LL  Y K  ++    ++F +MPMR+ VS
Sbjct: 142 GELLHGYAVKT----------GLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVS 191

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  +++G +R G       +F   +     + D  +F I L AC  S      + IH   
Sbjct: 192 WTAIITGLVRAGYNKEALVYFSE-MWRSRVEYDSYTFAIALKACADSGALNYGREIHAQA 250

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++    V N L T Y KCG    G  +F +M +R+V++WT +I+ LVQ    E  +
Sbjct: 251 MKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAV 310

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           + F++M    ++PN  T+ + +  C+ L  +  G Q+H ++  L L + L +E+++M MY
Sbjct: 311 QAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMY 370

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KCG +  +  IF      D VS + I+ G++Q G   EA +L   M   G +     ++
Sbjct: 371 AKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALA 430

Query: 363 AVLGVFGVDTSLGLGKQIHSLII---------KSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           +VL   G    L  GKQ+H+ ++         K   + +      +I++  + G L D+ 
Sbjct: 431 SVLSACGNMAILEHGKQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAE 490

Query: 414 KVFSRMA-PRNSVSWNSMIAAFARHGN 439
            +   M   R+ V W++++ A   HG+
Sbjct: 491 HMIEAMPFHRDDVVWSTLLRACRVHGD 517



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 131/289 (45%), Gaps = 21/289 (7%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S++  D+Y   +  L   A  G  + G  +HA  +K  + FD         ++ + N+L 
Sbjct: 218 SRVEYDSYT-FAIALKACADSGALNYGREIHAQAMK--KGFDV--------SSFVANTLA 266

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           + Y KC ++   + LF+ M MRD VSW T+++  ++ G+ +     F R  E      ++
Sbjct: 267 TMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDV-SPNE 325

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +F  ++S C         + +H L+   G    ++V N+++T Y KCG  +S   +F E
Sbjct: 326 YTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHE 385

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  R++++W+ +I+G  Q     E  +L   M +    P      S + AC  +  L  G
Sbjct: 386 MTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHG 445

Query: 277 RQIHGILWKLALQSDLCIES---------ALMDMYSKCGSVEDAWQIFE 316
           +Q+H  +  + L+                 ++D+  + G + DA  + E
Sbjct: 446 KQLHAYVLSIGLEHTAMKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIE 494


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 204/631 (32%), Positives = 319/631 (50%), Gaps = 77/631 (12%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            SL++ Y   D++  AV  FD +P   RDTV  N ++S + R          F+  L  G
Sbjct: 92  TSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 151 FYQLDQASFTIILSACDRSELSLVS----KMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             + D  SFT +LSA     L  +S      +HC V   G    ++V NAL+  Y KC S
Sbjct: 152 SLRPDDYSFTALLSA--GGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCES 209

Query: 207 ---SSSGRKVFGEMRVRNVITWT-------------------------------AVISGL 232
              +   RKV  EM  ++ +TWT                               A+ISG 
Sbjct: 210 PEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGY 269

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL----AL 288
           V + +  E  +LF +M L  +  +  T+ S + AC+ +     G+ +HG + +L      
Sbjct: 270 VHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVP 329

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN------------ 336
           ++ L + +AL+  YSKCG++  A +IF+     D VS   IL G+ ++            
Sbjct: 330 EAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEE 389

Query: 337 -------------------GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
                              GF E+A++LF KM    ++      +  +   G   +L  G
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHG 449

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           KQ+H  I++  F  +    N LI MY++CG ++++  +F  M   +SVSWN+MI+A  +H
Sbjct: 450 KQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQH 509

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G+G +ALEL++ M  EG+ P  ++FL++L AC+H GLV++G  + +SM     I P  +H
Sbjct: 510 GHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDH 569

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           Y  ++D++GRAG + EAR  I+ MP +P   +W+A+L  C   GD E+G +AA++LF   
Sbjct: 570 YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMT 629

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           P     YIL++N YS +G W + A+  K M++ GV KE G SWIE   +VH F+V D  H
Sbjct: 630 PQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKH 689

Query: 618 PQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           P+A  ++  L  +   M   GYVP+ + +LH
Sbjct: 690 PEAHEVYKFLEMVGAKMRKLGYVPDTKVVLH 720



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 159/340 (46%), Gaps = 70/340 (20%)

Query: 87  NATVIWNSLLSFYLKCDQ---MRNAVKLFDDMPMRDTVSW-------------------- 123
            A  + N+L++ Y+KC+     R+A K+ D+MP +D ++W                    
Sbjct: 192 GALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVF 251

Query: 124 -----------NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELS 172
                      N M+SG++ +G     F  F+R + L    LD+ +FT +LSAC    L 
Sbjct: 252 EEVDGKFDVVWNAMISGYVHSGMAVEAFELFRR-MVLERVPLDEFTFTSVLSACANVGLF 310

Query: 173 LVSKMIHCLVYLCG----YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
              K +H  +         E  + V NAL+T Y KCG+ +  R++F  M +++V++W  +
Sbjct: 311 AHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTI 370

Query: 229 ISGLVQ-----------------NQL--------------YEEGLKLFVKMHLGLINPNS 257
           +SG V+                 N+L               E+ LKLF KM    + P  
Sbjct: 371 LSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCD 430

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
            TY  ++ AC  L AL  G+Q+HG + +L  +      +AL+ MY++CG+V++A  +F  
Sbjct: 431 YTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLV 490

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
              +D VS   ++    Q+G   EA++LF +MV  GI  D
Sbjct: 491 MPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPD 530



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 127/267 (47%), Gaps = 43/267 (16%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV-IWNSLL 96
           ++ LD +   + +LS  A  G F  G S+H   I+    F       VP A + + N+L+
Sbjct: 289 RVPLDEFT-FTSVLSACANVGLFAHGKSVHGQIIRLQPNF-------VPEAALPVNNALV 340

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF---------------- 140
           +FY KC  +  A ++FD+M ++D VSWNT++SG++ +   D                   
Sbjct: 341 TFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMV 400

Query: 141 --------GFFKRSLELGFYQLDQA-------SFTIILSACDRSELSLVSKMIHCLVYLC 185
                   GF + +L+L F ++          ++   ++AC         K +H  +   
Sbjct: 401 MVSGYVHGGFAEDALKL-FNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQL 459

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+E   + GNALIT Y +CG+      +F  M   + ++W A+IS L Q+    E L+LF
Sbjct: 460 GFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELF 519

Query: 246 VKMHLGLINPNSLTYLSSVMAC--SGL 270
            +M    I P+ +++L+ + AC  SGL
Sbjct: 520 DRMVAEGIYPDRISFLTVLTACNHSGL 546


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/568 (33%), Positives = 314/568 (55%), Gaps = 17/568 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +L S Y +   +  A ++FD    RD VSWN M+  + ++G        F R L  
Sbjct: 261 VVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +  +  T++ ++   S L    +MIH      G + ++ +GNAL+  Y +CGS   
Sbjct: 321 G---ISPSKVTLVNASTGCSSLRF-GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEE 376

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F  +   N ++W  +I+G  Q    +  ++LF +M L  + P   TYL+ + A + 
Sbjct: 377 ARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 270 ----LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---FAEELD 322
                +A+ EGR++H  +      S+  I +A++ MY+ CG++++A   F+     +  D
Sbjct: 436 NPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            VS   I+   +Q+G  + A+  F +M   G+   PN ++  AVL       +L  G+ +
Sbjct: 496 VVSWNAIISSLSQHGHGKRALGFFRRMDLHGVA--PNQITCVAVLDACAGAAALTEGEIV 553

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           H  +  S   SN FV   L +MY +CG LE + ++F ++A  R+ V +N+MIAA++++G 
Sbjct: 554 HDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGL 613

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +AL+L+  M+ EG  P + +F+S+L ACSH GL ++G E  +SM + + I+P  +HYA
Sbjct: 614 AGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYA 673

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C VD++GRAG L +A   I  M VKP VLVW+ LLGAC  + D + G+ A   +    P 
Sbjct: 674 CAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPG 733

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
             + Y++++NI + +G+W E A+    M+  G+ KE G SWIEI+ +VH FV  D+ HP+
Sbjct: 734 DESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPR 793

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           ++ I+  L  L   + + GYVP+ R +L
Sbjct: 794 SEEIYRELERLHAEIREIGYVPDTRLVL 821



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 242/461 (52%), Gaps = 28/461 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL  YLKC+ + +  ++F  + +RD  SW T+++ +  +G+     G F R  + G  
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGV- 124

Query: 153 QLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           + D  +F  +L AC R  +LS   + IH  +   G + +  + N L+  Y  CG  +S  
Sbjct: 125 RCDAVTFLAVLKACARLGDLSQ-GRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAM 183

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            +F +M  R++++W A I+   Q+      L+LF +M L  + P  +T + ++  C+ ++
Sbjct: 184 LLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIR 242

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
              + + IH I+ +  L+  L + +AL   Y++ G +  A ++F+ A E D VS   +L 
Sbjct: 243 ---QAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLG 299

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +AQ+G   EA  LF +M+  G  I P+ V+ V    G  +SL  G+ IH   ++     
Sbjct: 300 AYAQHGHMSEAALLFARMLHEG--ISPSKVTLVNASTGC-SSLRFGRMIHGCALEKGLDR 356

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  + N L++MY++CG  E++  +F R+ P N+VSWN+MIA  ++ G   +A+EL++ M+
Sbjct: 357 DIVLGNALLDMYTRCGSPEEARHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQ 415

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEHYA-------CVV 502
           LEG+ P   T+L+LL A      V    E  ++M E  ++  R  +  YA        VV
Sbjct: 416 LEGMAPVRATYLNLLEA------VASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVV 469

Query: 503 DMVGRAGLLIEARSFIER--MPVKPDVLVWQALLGACSIHG 541
            M    G + EA +  +R  M  + DV+ W A++ + S HG
Sbjct: 470 KMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHG 510



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 194/409 (47%), Gaps = 19/409 (4%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           A    +L A     L    + IH  +   G EEE+  GN L+  Y KC S     +VF  
Sbjct: 30  AHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSR 87

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           + VR+  +WT +I+   ++   +  + +F +M    +  +++T+L+ + AC+ L  L +G
Sbjct: 88  LEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG 147

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           R IH  + +  L+    + + L+ +Y  CG V  A  +FE  E  D VS    +   AQ+
Sbjct: 148 RSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKMER-DLVSWNAAIAANAQS 206

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G    A++LF +M   G+   P  ++ V+ +  V  ++   + IH ++ +S       V+
Sbjct: 207 GDLGIALELFQRMQLEGVR--PARITLVIALT-VCATIRQAQAIHFIVRESGLEQTLVVS 263

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             L + Y++ G L  + +VF R A R+ VSWN+M+ A+A+HG+  +A  L+  M  EG+ 
Sbjct: 264 TALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIS 323

Query: 457 PTDVTFLSLLHACSHV--GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           P+ VT ++    CS +  G +  G    K +     +         ++DM  R G   EA
Sbjct: 324 PSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGN------ALLDMYTRCGSPEEA 377

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           R   +R+P   + + W  ++   S  G     K A E     Q +  AP
Sbjct: 378 RHLFKRIPC--NAVSWNTMIAGSSQKGQM---KRAVELFQRMQLEGMAP 421


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 187/560 (33%), Positives = 307/560 (54%), Gaps = 8/560 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y    +  +A  +F  M  +D +SWN+M++ + ++G          + L   FY
Sbjct: 271 NTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDAL----KLLATMFY 326

Query: 153 QLDQA---SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
               A   +FT  L+AC   E +   K++H LV   G  E V VGNAL+T Y K G    
Sbjct: 327 MRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIE 386

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +KVF  M  R+ +TW A+I G   ++  +E LK F  M    +  N +T  + + AC  
Sbjct: 387 AKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLA 446

Query: 270 LQALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              L E G  IH  +     QSD  ++++L+ MY+KCG +  +  IF+     +  +   
Sbjct: 447 PNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNA 506

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++   A +G  EEA++  ++M +AG+ +D    S  L        L  G+Q+H L +K  
Sbjct: 507 MMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLG 566

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SNPFV +  ++MY KCG+++D +++  R   R+ +SWN + ++F+RHG   KA E + 
Sbjct: 567 CDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFH 626

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM   GV+P  VTF+SLL ACSH G+V +G+ +  SM +   I  +  H  C++D++GR+
Sbjct: 627 EMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRS 686

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G   EA +FI+ MPV P   VW++LL AC  HG+ E+G+ A E L    P   + Y+L +
Sbjct: 687 GRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYS 746

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NI + +G+W++  K  ++M    + K+   SW++++ ++  F + D  HPQA  I+  L 
Sbjct: 747 NICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLE 806

Query: 629 ELLRLMIDEGYVPNKRFILH 648
           EL +++ + GY+P+  + L 
Sbjct: 807 ELKKMIKEAGYIPDISYALQ 826



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 226/446 (50%), Gaps = 8/446 (1%)

Query: 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM-IHCLVYLC 185
           +SGF+R G +     FF    + G      A  +++ +AC+RSE  L+  + +H  +   
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLV-TACERSEWMLIEGVQVHGFIVKV 59

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G   +V VG +L+  Y   G ++   KVF EM  +NV++WTA++   V        + ++
Sbjct: 60  GLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M    ++ N  T  S +  C  L+    G Q+ G + K  L++++ + ++L+ M+   
Sbjct: 120 RRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYF 179

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           GSVE+A  +F   +E D +S   ++  + +NG  +E+++ F  M +   EI+   +S +L
Sbjct: 180 GSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTML 239

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
              G   +L  G+ IHSL++K  + SN   +N LI MYS  G  ED+  VF  M  ++ +
Sbjct: 240 AGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMI 299

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWNSM+A +A+ GN   AL+L   M         VTF S L ACS      +G + L ++
Sbjct: 300 SWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG-KILHAL 358

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
                +         +V +  ++GL+IEA+   + MP K D + W AL+G    H DSE 
Sbjct: 359 VIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGG---HADSEE 414

Query: 546 GKYAAEKLFLAQPDS-PAPYILMANI 570
              A +   L + +  P  YI ++N+
Sbjct: 415 PDEALKAFKLMREEGVPINYITISNV 440



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 181/379 (47%), Gaps = 1/379 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  SL+  Y       +A+K+F +M  ++ VSW  ++  ++  GE  M    ++R    G
Sbjct: 67  VGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEG 126

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  + + ++S C   E  L+   +   V   G E  V+V N+LI+ +   GS    
Sbjct: 127 M-SCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEA 185

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  M   + I+W ++I+  ++N L +E L+ F  M       NS T  + +  C  +
Sbjct: 186 CYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSV 245

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  GR IH ++ K    S++C  + L+ MYS  G  EDA  +F+   E D +S   ++
Sbjct: 246 DNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMM 305

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             +AQ+G   +A++L   M       +    ++ L           GK +H+L+I     
Sbjct: 306 ACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLH 365

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            N  V N L+ +Y+K G + ++ KVF  M  R+ V+WN++I   A      +AL+ ++ M
Sbjct: 366 ENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLM 425

Query: 451 KLEGVEPTDVTFLSLLHAC 469
           + EGV    +T  ++L AC
Sbjct: 426 REEGVPINYITISNVLGAC 444


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/564 (32%), Positives = 307/564 (54%), Gaps = 13/564 (2%)

Query: 93  NSLLSFYLKC-----DQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N LLS  L+      +  +  + +F   P   +T  +NTM+ G +    F+     +  S
Sbjct: 36  NDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYA-S 94

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +       D  +F+ +L AC R  L  +  MIH LV+  G++ +V V   ++  Y KCG 
Sbjct: 95  MHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGF 154

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                KVF +M V+NV++WT +I G ++   + E + LF  +    + P+    +  + A
Sbjct: 155 LRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRA 214

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ L  L  GR I   + +  L  ++ + ++L+DMY+KCGS+E+A  +F+   E D V  
Sbjct: 215 CARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCW 274

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSL 383
           + ++ G+A NG   EA++LF +M K  +  D     A++G      SLG   LG     L
Sbjct: 275 SAMIQGYASNGLPREAIELFFEMRKVNVRPD---CYAMVGALSSCASLGALELGNWAKGL 331

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +   +F SNP +   LI+ Y+KCG +E+++ V+  M  ++ V +N++I+  A +G    A
Sbjct: 332 MNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAA 391

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
             ++ +M   G+ P + TF+ LL  C+H GLV+ G  +  SM+    ++P  EHY C+VD
Sbjct: 392 FGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVD 451

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++ RAG L EA + I+ MP+K +V+VW +LLG C +H ++++ ++  ++L   +P +   
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGH 511

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L++NIYS S RW E  K    + E G+ K  G SW+E++  VH F+V D  HP +  I
Sbjct: 512 YVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKI 571

Query: 624 HGVLAELLRLMIDEGYVPNKRFIL 647
           +  L  L + + + GY P   F+L
Sbjct: 572 YEKLESLFKDLKEAGYNPTTEFVL 595



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 195/407 (47%), Gaps = 22/407 (5%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           + +V D++   S +L   A+   FHLG  +H+   KT   FD            +  +++
Sbjct: 98  AAIVPDSFT-FSFVLKACARLNLFHLGVMIHSLVFKT--GFDCD--------VFVKTNVV 146

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
            FY KC  +R+A K+FDDM +++ VSW  M+ G +  G+F      F+  LE G  + D 
Sbjct: 147 CFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGL-RPDG 205

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
                +L AC R       + I   +  CG    V V  +L+  Y KCGS    R VF  
Sbjct: 206 FVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDG 265

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  ++++ W+A+I G   N L  E ++LF +M    + P+    + ++ +C+ L AL  G
Sbjct: 266 MVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG 325

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
               G++      S+  + ++L+D Y+KCGS+E+A  +++  +E D V    ++ G A  
Sbjct: 326 NWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMY 385

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNP 393
           G    A  +F +M K GI   P      +G+    T  GL   G+   +  +  DF+  P
Sbjct: 386 GQVGAAFGVFGQMGKFGI---PPNEHTFVGLLCGCTHAGLVDDGRHYFN-SMSHDFSVTP 441

Query: 394 FVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARH 437
            + +   ++++ ++ G L+++  +   M  + N + W S++     H
Sbjct: 442 TIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLH 488


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/540 (33%), Positives = 290/540 (53%), Gaps = 1/540 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N +L  Y  C    +A + FD +  +D  SW+T++S +   G  D     F R L+LG
Sbjct: 128 IDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLG 187

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                    T+I+S  D S L L  K IH  +   G+   +++   +   Y KCG     
Sbjct: 188 ITPNSSIFSTLIMSFTDPSMLDL-GKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGA 246

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
                +M  +N +  T ++ G  +     + L LF KM    +  +   +   + AC+ L
Sbjct: 247 EVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAAL 306

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+QIH    KL L+S++ + + L+D Y KC   E A Q FE   E +  S + ++
Sbjct: 307 GDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALI 366

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+ Q+G  + A+++F  +   G+ ++  + + +       + L  G QIH+  IK    
Sbjct: 367 AGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLV 426

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           +     + +I+MYSKCG ++ + + F  +   ++V+W ++I A A HG  F+AL L++EM
Sbjct: 427 AYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEM 486

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  GV P  VTF+ LL+ACSH GLV +G + L SM++ + ++P  +HY C++D+  RAGL
Sbjct: 487 QGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGL 546

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   I  +P +PDV+ W++LLG C  H + E+G  AA+ +F   P   A Y++M N+
Sbjct: 547 LQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNL 606

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G+W E A+  K M E  + KE   SWI ++ +VH FVV D+ HPQ + I+  L EL
Sbjct: 607 YALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKEL 666



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 18/292 (6%)

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           INP S  YL  +  C  L AL +G+  H  L ++A  S+  I++ ++ MY  C S   A 
Sbjct: 90  INPRSYEYLFKM--CGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSAE 146

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           + F+   + D  S + I+  + + G  +EA++LF++M+  GI  + ++ S ++  F   +
Sbjct: 147 RFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPS 206

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L LGKQIHS +I+  F +N  +   + NMY KCG L+ +    ++M  +N+V+   ++ 
Sbjct: 207 MLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMV 266

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF------LKSMT 486
            + +      AL L+ +M  EGVE     F  +L AC+ +G +  G +       L   +
Sbjct: 267 GYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLES 326

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GAC 537
           EV   +P       +VD   +      AR   E +  +P+   W AL+ G C
Sbjct: 327 EVSVGTP-------LVDFYVKCARFEAARQAFESIH-EPNDFSWSALIAGYC 370



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 38/253 (15%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L+  A+ G   E  +    M K GI I+P     +  + G   +L  GK  H+ + +   
Sbjct: 64  LISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA- 122

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN F++N ++ MY  C     + + F ++  ++  SW+++I+A+   G   +A+ L+  
Sbjct: 123 NSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLR 182

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV---HRIS-------------- 492
           M   G+ P    F +L+ + +   +++ G +    +  +     IS              
Sbjct: 183 MLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGW 242

Query: 493 -----------PRAEHYACVVDMVG-------RAGLLIEARSFIERMPVKPDVLVWQALL 534
                       R    AC   MVG       R  LL+  +   E   V+ D  V+  +L
Sbjct: 243 LDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISE--GVELDGFVFSIIL 300

Query: 535 GACSIHGDSEMGK 547
            AC+  GD   GK
Sbjct: 301 KACAALGDLYTGK 313


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 304/550 (55%), Gaps = 12/550 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF--KRSLELG 150
           N+L++ Y+KC  +++A  LFD MP RD +SWN M+SG+  NG    G   F   R L + 
Sbjct: 235 NALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSV- 293

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  + T ++SAC+      + + IH  V   G+  +++V N+L   Y   GS    
Sbjct: 294 --DPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREA 351

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  +++++WT +ISG   N L E+ +  +  M    + P+ +T  + + AC+ L
Sbjct: 352 EKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATL 411

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H +  K  L S + + + L++MYSKC  ++ A  IF      + +S T I+
Sbjct: 412 GDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSII 471

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSD 388
            G   N    EA+  F +M    + + PN ++    +       +L  GK+IH+ ++++ 
Sbjct: 472 AGLRLNNRCFEALIFFRQM---KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              + F+ N L++MY +CG +  +   F+    ++  SWN ++  ++  G G   +EL++
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNIAWNQFNSQ-KKDVSSWNILLTGYSERGQGSVVVELFD 587

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M    V P ++TF+SLL  C    +V +G+ +   M E + ++P  +HYACVVD++GRA
Sbjct: 588 RMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRA 646

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  FI++MPV PD  VW ALL AC IH + ++G+ +A+++F     S   YIL+ 
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLC 706

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+  G+W+E AK  + MKE G+  + G SW+E++ +VH+F+ DDK HPQ   I+ VL 
Sbjct: 707 NLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLD 766

Query: 629 ELLRLMIDEG 638
                M + G
Sbjct: 767 GFYEKMSEVG 776



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/454 (31%), Positives = 224/454 (49%), Gaps = 14/454 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+ L+ +++   + +A  +F  M  R+  SWN +V G+ + G FD     + R L +G  
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGV 192

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L  C         + +H  V   GYE ++ V NALIT Y KCG   S R 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  M  R++I+W A+ISG  +N +  EGLKLF  M    ++P+ +T  S + AC  L  
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGD 312

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR IH  +       D+ + ++L  MY   GS  +A ++F   +  D VS T ++ G
Sbjct: 313 RRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISG 372

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +  N   E+A+  +  M +  ++ D   V+AVL        L  G ++H L IK+   S 
Sbjct: 373 YEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY 432

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LINMYSKC  ++ ++ +F  +  +N +SW S+IA    +   F+AL  + +MK+
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKM 492

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRA 508
             ++P  +T  + L AC+ +G +  G E     L++   +    P A     ++DM  R 
Sbjct: 493 T-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNA-----LLDMYVRC 546

Query: 509 GLL-IEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G + I    F  +   K DV  W  LL   S  G
Sbjct: 547 GRMNIAWNQFNSQ---KKDVSSWNILLTGYSERG 577



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 228/494 (46%), Gaps = 29/494 (5%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN-SLLSFYLKCDQMRNAV 109
           ++ SA+  HF+L P    SF        N N Y        WN      +L+    ++  
Sbjct: 1   MASSAQSPHFYLNPGKSNSFQSKVHKHRNVNFY--------WNFGFRKLFLR----KSRG 48

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
                     T   N+ + G   NG+ +          EL    +D+  F  ++  C+  
Sbjct: 49  LSVLSSSSSSTHFSNSQLHGLCANGKLEEAMKLLNSMQELRV-AVDEDVFVALVRLCEWK 107

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                   ++ +         V +GNA +  + + G+      VFG+M  RN+ +W  ++
Sbjct: 108 RAHEEGSKVYSVALSSMNSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLV 167

Query: 230 SGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
            G  +   ++E + L+ +M  +G + P+  T+   +  C G+  L  GR++H  + +   
Sbjct: 168 GGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGY 227

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
           + D+ + +AL+ MY KCG V+ A  +F+     D +S   ++ G+ +NG   E ++LF  
Sbjct: 228 ELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFA 287

Query: 349 MVKAGIEIDPNM--VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           M   G+ +DP++  +++V+    +     LG+ IH+ +I + F  +  V N L  MY   
Sbjct: 288 M--RGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYA 345

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G   ++ K+FSRM  ++ VSW +MI+ +  +    KA++ Y  M  + V+P ++T  ++L
Sbjct: 346 GSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVL 405

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERMP 522
            AC+ +G ++ G+E  K   +   IS     Y  V    ++M  +   + +A      +P
Sbjct: 406 SACATLGDLDTGVELHKLAIKARLIS-----YVIVANNLINMYSKCKCIDKALDIFHNIP 460

Query: 523 VKPDVLVWQALLGA 536
            K +V+ W +++  
Sbjct: 461 RK-NVISWTSIIAG 473



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 183/391 (46%), Gaps = 18/391 (4%)

Query: 53  ISAKE--GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           ISA E  G   LG  +HA  I T    D            + NSL   YL     R A K
Sbjct: 304 ISACELLGDRRLGRDIHAYVITTGFAVD----------ISVCNSLTQMYLYAGSWREAEK 353

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LF  M  +D VSW TM+SG+  N   +     + R ++    + D+ +   +LSAC    
Sbjct: 354 LFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTY-RMMDQDSVKPDEITVAAVLSACATLG 412

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                  +H L         V V N LI  Y KC        +F  +  +NVI+WT++I+
Sbjct: 413 DLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIA 472

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL  N    E L  F +M + L  PN++T  +++ AC+ + AL  G++IH  + +  +  
Sbjct: 473 GLRLNNRCFEALIFFRQMKMTL-QPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGL 531

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D  + +AL+DMY +CG +  AW  F  +++ D  S  ++L G+++ G     ++LF +MV
Sbjct: 532 DDFLPNALLDMYVRCGRMNIAWNQFN-SQKKDVSSWNILLTGYSERGQGSVVVELFDRMV 590

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           KA +  D     ++L   G    +  G    S + +   T N      ++++  + G+L+
Sbjct: 591 KARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQ 650

Query: 411 DSIKVFSRM--APRNSVSWNSMIAAFARHGN 439
           ++ K   +M   P  +V W +++ A   H N
Sbjct: 651 EAHKFIQKMPVTPDPAV-WGALLNACRIHHN 680


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/518 (34%), Positives = 288/518 (55%), Gaps = 5/518 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+LL+ Y+   ++  A  +FD M  RD +SWNTM+SG+ RNG  +     F   +   
Sbjct: 154 VQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNES 213

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              LD A+   +L  C   +   + + +H LV      +++ V NAL+  Y KCG     
Sbjct: 214 V-DLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEA 272

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  R+VITWT +I+G  ++   E  L+L   M    + PN++T  S V  C   
Sbjct: 273 RFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDA 332

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             + +G+ +HG   +  + SD+ IE++L+ MY+KC  V+  +++F  A +      + I+
Sbjct: 333 LKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAII 392

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G  QN    +A+ LF +M +  +E +   ++++L  +     L     IH  + K+ F 
Sbjct: 393 AGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFM 452

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFS----RMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S+     GL+++YSKCG LE + K+F+    +   ++ V W ++I+ +  HG+G  AL++
Sbjct: 453 SSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQV 512

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + EM   GV P ++TF S L+ACSH GLV +G+   + M E ++   R+ HY C+VD++G
Sbjct: 513 FMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLG 572

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L EA + I  +P +P   VW ALL AC  H + ++G+ AA KLF  +P++   Y+L
Sbjct: 573 RAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVL 632

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           +ANIY+  GRWK+  K    M+ +G+ K+ G S IEI 
Sbjct: 633 LANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIR 670



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 223/456 (48%), Gaps = 5/456 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I ++L   Y  C  +  A KLF++MP    +S+N ++  ++R G +      F R +  G
Sbjct: 51  ILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEG 110

Query: 151 FYQL-DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + D  ++  +  A    +   +  ++H  +    +  +  V NAL+  Y   G    
Sbjct: 111 VKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEM 170

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF  M+ R+VI+W  +ISG  +N    + L +F  M    ++ +  T +S +  C  
Sbjct: 171 ARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGH 230

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ L  GR +H ++ +  L   + +++AL++MY KCG +++A  +F+  E  D ++ T +
Sbjct: 231 LKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCM 290

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ ++G  E A++L   M   G+  +   +++++ V G    +  GK +H   ++   
Sbjct: 291 INGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQV 350

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  +   LI+MY+KC  ++   +VFS  +  ++  W+++IA   ++     AL L++ 
Sbjct: 351 YSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKR 410

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ E VEP   T  SLL A + +  + + M     +T+   +S   +    +V +  + G
Sbjct: 411 MRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSS-LDAATGLVHVYSKCG 469

Query: 510 LLIEARSF---IERMPVKPDVLVWQALLGACSIHGD 542
            L  A      I+      DV++W AL+    +HGD
Sbjct: 470 TLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGD 505



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 129/283 (45%), Gaps = 20/283 (7%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N V I+ L+S+       + G  LH   ++       Q VY+     +I  SL+S Y
Sbjct: 315 VRPNAVTIASLVSVCGDALKVNDGKCLHGWAVR-------QQVYS---DIIIETSLISMY 364

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC ++    ++F       T  W+ +++G ++N       G FKR +     + + A+ 
Sbjct: 365 AKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKR-MRREDVEPNIATL 423

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG---- 215
             +L A         +  IHC +   G+   +     L+  Y KCG+  S  K+F     
Sbjct: 424 NSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQE 483

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275
           + + ++V+ W A+ISG   +      L++F++M    + PN +T+ S++ ACS    + E
Sbjct: 484 KHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEE 543

Query: 276 GRQIHGIL---WKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           G  +   +   +K   +S+    + ++D+  + G +++A+ + 
Sbjct: 544 GLTLFRFMLEHYKTLARSNH--YTCIVDLLGRAGRLDEAYNLI 584


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/607 (31%), Positives = 325/607 (53%), Gaps = 29/607 (4%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           LL +  + G      +LH   +KT    D            +  SL++ Y++C   ++A 
Sbjct: 84  LLHVCVETGSLGGARALHGHMVKTGTSAD----------MFVATSLVNAYMRCGASQDAR 133

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            LFD MP ++ V+W  +++G+  N +       F   LE G Y     +   +L+AC  S
Sbjct: 134 SLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYP-SHYTLGAMLNACSAS 192

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
             + +   +H            ++GN+L   Y K GS  S  + F  +  +NVITWT +I
Sbjct: 193 NNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMI 252

Query: 230 SGLVQNQLYEE-GLKLFVKMHLGLINPNSLTYLSSVMACSGLQ-ALCEGRQIHGILWKLA 287
           S   +++ Y E GL LF+ M +  + PN  T L+SVM+  G +  L  G+Q+    +K+ 
Sbjct: 253 SACAEDENYTELGLTLFLDMLMDGVLPNEFT-LTSVMSLCGTRLDLNLGKQVQAFCFKIG 311

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ------------ 335
            Q+++ ++++ M +Y + G  ++A + FE  +++  ++   ++ G+AQ            
Sbjct: 312 CQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHAR 371

Query: 336 -NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
             GF+  A+++F  + ++ ++ D    S++L V     +L  G+QIH+  IK+ F S+  
Sbjct: 372 SRGFQ--ALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVV 429

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           VN+ L+NMY+KCG +ED+ K F  M+ R  V+W SMI+ +++HG   +A++L+E+M+  G
Sbjct: 430 VNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAG 489

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
           V P ++TF+ +L ACS+ GL  K   +   M E ++I P  +HY C+VDM  R G L +A
Sbjct: 490 VRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDA 549

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
            +FI R   +P+  +W +L+  C  HG+ E+  YAA++L   +P     Y+L+ N+Y  +
Sbjct: 550 FAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISN 609

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            RW + A+  K MK+ G+      SWI I+ +V+ F  +DK H  +D ++ +L  LL   
Sbjct: 610 ERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKA 669

Query: 635 IDEGYVP 641
              GY P
Sbjct: 670 KTIGYEP 676



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 149/329 (45%), Gaps = 47/329 (14%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
            S  Y+  +  C    +L   R +HG + K    +D+ + ++L++ Y +CG+ +DA  +F
Sbjct: 77  QSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLF 136

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +   E + V+ T ++ G+  N    EA+++FV+M++AG       + A+L       +  
Sbjct: 137 DQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNAD 196

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           LG Q+H   IK    S   + N L  MY+K G LE +++ F  +  +N ++W +MI+A A
Sbjct: 197 LGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACA 256

Query: 436 RHGNGFK-ALELYEEMKLEGVEPTDVTFLSLLHACS------------------------ 470
              N  +  L L+ +M ++GV P + T  S++  C                         
Sbjct: 257 EDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNI 316

Query: 471 -----------HVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSF 517
                        G  ++ M F + M +V  I+  A    YA +++   +  L   +R F
Sbjct: 317 PVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIME-TAKDDLHARSRGF 375

Query: 518 --------IERMPVKPDVLVWQALLGACS 538
                   ++R  +KPD+  + ++L  CS
Sbjct: 376 QALKVFRNLKRSAMKPDLFTFSSILSVCS 404



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 18/216 (8%)

Query: 334 AQNGFEEEA------MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           AQNG   EA      +   + M++ G  +   M   +L V     SLG  + +H  ++K+
Sbjct: 48  AQNGSTMEAPLRPLDVGEAMAMLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKT 107

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             +++ FV   L+N Y +CG  +D+  +F +M  +N V+W ++I  +  +    +ALE++
Sbjct: 108 GTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVF 167

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD---- 503
            EM   G  P+  T  ++L+ACS     + G     S    + I  RA     + +    
Sbjct: 168 VEMLEAGRYPSHYTLGAMLNACSASNNADLG-----SQVHGYTIKYRALSITSIGNSLCR 222

Query: 504 MVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACS 538
           M  ++G L  A R+F  RM    +V+ W  ++ AC+
Sbjct: 223 MYAKSGSLESAMRAF--RMVPDKNVITWTTMISACA 256


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 316/572 (55%), Gaps = 34/572 (5%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG- 150
           +  ++  + + ++++ AV     +P      ++T+++  LR+           R LELG 
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRH-----------RKLELGK 83

Query: 151 -FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY------------EEEVTVGNAL 197
             +   +AS  I         + + +++IH +   CG             ++++   N +
Sbjct: 84  RVHAHTKASNFI-------PGIVISNRLIH-MYAKCGSLVDAQMLFDEIPQKDLCSWNTM 135

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPN 256
           I+ Y   G     RK+F EM  R+  +W AVISG V    Y E L LF  M      N N
Sbjct: 136 ISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCN 195

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T  S++ A + + +L  G++IHG L +  L+ D  + +AL+D+Y KCGS+ +A  IF+
Sbjct: 196 MFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFD 255

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              + D VS T ++    ++G ++E   LF  ++ +G+  +    + VL       +  +
Sbjct: 256 QMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQM 315

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK++H  + +  +    F  + L+++YSKCG+ E + +VF++M   + VSW S+I  +A+
Sbjct: 316 GKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQ 375

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G    AL+ +E +   G +P ++TF+ +L AC+H GLV+ G+E+  S+ E H +   A+
Sbjct: 376 NGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTAD 435

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HYACV+D++ R+G   EA + I+ MP+KPD  +W +LLG C IHG+ E+ + AA+ LF  
Sbjct: 436 HYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFEL 495

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +P++PA YI ++NIY+ +G W E  K    M   G+ K+ G SWIEI++QVH F+V D  
Sbjct: 496 EPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTS 555

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           HP+   IH  L EL + M +EGYV +  F+LH
Sbjct: 556 HPKISDIHEYLGELSKKMKEEGYVADTNFVLH 587



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 213/473 (45%), Gaps = 70/473 (14%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           S L++   +     LG  +HA          +    N     VI N L+  Y KC  + +
Sbjct: 67  STLIAACLRHRKLELGKRVHA----------HTKASNFIPGIVISNRLIHMYAKCGSLVD 116

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR---------------SLELGFY 152
           A  LFD++P +D  SWNTM+SG+   G  +     F                  +  G+Y
Sbjct: 117 AQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWY 176

Query: 153 QLDQASFTIILSACDRSELSLVS-----------------KMIHCLVYLCGYEEEVTVGN 195
            ++      ++   + S  ++ +                 K IH  +   G E +  V  
Sbjct: 177 -MEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWT 235

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           AL+  Y KCGS +  R +F +M  +++++WT +I    ++   +EG  LF  +    + P
Sbjct: 236 ALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRP 295

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           N  T+   + AC+ L A   G+++HG + ++         SAL+ +YSKCG+ E A ++F
Sbjct: 296 NEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVF 355

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
                 D VS T ++VG+AQNG  + A+Q F  ++++G +  P+ ++ V GV    T  G
Sbjct: 356 NQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK--PDEITFV-GVLSACTHAG 412

Query: 376 L----------GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NS 424
           L           K+ H L+  +D  +       +I++ ++ G  +++  +   M  + + 
Sbjct: 413 LVDIGLEYFHSVKEKHGLVHTADHYA------CVIDLLARSGRFKEAENIIDNMPMKPDK 466

Query: 425 VSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD-VTFLSLLHACSHVGL 474
             W S++     HGN    +EL E     L  +EP +  T+++L +  ++ GL
Sbjct: 467 FLWASLLGGCRIHGN----IELAERAAKALFELEPENPATYITLSNIYANAGL 515


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/478 (37%), Positives = 283/478 (59%), Gaps = 12/478 (2%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +++I  L Y  G+     +G+ L++ YFK G     +++F EM  R++++W +++SGL  
Sbjct: 163 ARVIKSLNYSDGF-----IGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSG 217

Query: 235 NQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
                  L  F +M       PN +T LS V AC+ + AL EG+ +HG++ KL +     
Sbjct: 218 RGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAK 277

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L++MY K G ++ A Q+FE       VS   ++V    NG+ E+ M LF  M +AG
Sbjct: 278 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 337

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           I  D   + A+L      T  GLG+Q   IH+ I +  F ++  +   L+N+Y+K G L 
Sbjct: 338 INPDQATMVALLRAC---TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLN 394

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            S  +F  +  R++++W +M+A +A H  G +A++L++ M  EGVE   VTF  LL ACS
Sbjct: 395 ASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 454

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV +G ++ + M+EV+R+ PR +HY+C+VD++GR+G L +A   I+ MP++P   VW
Sbjct: 455 HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVW 514

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            ALLGAC ++G+ E+GK  AE+L    P     YI+++NIYS +G W+  +K    MKE 
Sbjct: 515 GALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKER 574

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            + +  G S+IE   ++H FVV D++HP++D IH  L EL+R + + G  P   F+LH
Sbjct: 575 RLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLH 632



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 219/462 (47%), Gaps = 46/462 (9%)

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           ++HA  IK+    D            I + L+S Y K     +A +LFD+MP RD VSWN
Sbjct: 160 AIHARVIKSLNYSDG----------FIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWN 209

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           +++SG    G        F R       Q ++ +   ++SAC         K +H +V  
Sbjct: 210 SLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVK 269

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G   +  V N+LI  Y K G   +  ++F EM VR++++W +++     N   E+G+ L
Sbjct: 270 LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDL 329

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    INP+  T ++ + AC+      +   IH  + +    +D+ I +AL+++Y+K
Sbjct: 330 FNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAK 389

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G +  +  IFE  ++ D ++ T +L G+A +    EA++LF  MVK G+E+D    + +
Sbjct: 390 LGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHL 449

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-- 420
           L        +  GK+    I+   +   P +++   ++++  + G LED+ ++   M   
Sbjct: 450 LSACSHSGLVEEGKKYFE-IMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME 508

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD-VTFLSLLHACSHVGL--- 474
           P + V W +++ A   +GN    +EL +E+  +L  ++P+D   ++ L +  S  GL   
Sbjct: 509 PSSGV-WGALLGACRVYGN----VELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRX 563

Query: 475 --------------VNKGMEFLKSMTEVHR------ISPRAE 496
                          N G  F++   ++HR      + PR++
Sbjct: 564 ASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSD 605



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           TS+     IH+ +IKS   S+ F+ + L++MY K G  ED+ ++F  M  R+ VSWNS++
Sbjct: 153 TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLM 212

Query: 432 AAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +  +  G     L  +  M+ E G +P +VT LS++ AC+ +G +++G      + ++  
Sbjct: 213 SGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLG- 271

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           +S +A+    +++M G+ G L  A    E MPV+  ++ W +++   + +G +E G
Sbjct: 272 MSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHNHNGYAEKG 326


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 311/585 (53%), Gaps = 22/585 (3%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           +HA  IKT    D            +  SL++ Y KC  M NA K+FD +  R+ V+W  
Sbjct: 96  IHAHIIKTGTHKD----------LAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTA 145

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           +++G+++N + ++    F+  LE G       +  I L+AC       + K +H  V   
Sbjct: 146 LMTGYVQNSQPNIAIDVFQDMLESGTLP-SNYTLGIALNACSAINSIKLGKQLHAFVIKY 204

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
             + + ++GNAL + Y K GS  S   VF  +  +NVI+WTAVIS   +N     GL+ F
Sbjct: 205 KLDYDPSIGNALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFF 264

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
            +M L  I PN  T  + +  C    AL  GR +H +  KL  Q +L I +++M +Y KC
Sbjct: 265 NEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKC 324

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQ------NGFEE-----EAMQLFVKMVKAGI 354
           G +++A  +F      + V+   ++ G AQ      + F       EA+ +F+++ + G 
Sbjct: 325 GHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGK 384

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           + D   +S+VL V    ++LG G+Q+H+  IKS + S+  V   L+NMYSKCG +  + K
Sbjct: 385 KPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASK 444

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
            F  M+ R  +SW +MI   A+HG+  +AL+L+E+M+L GV P  +TF+ +L AC H G+
Sbjct: 445 AFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGM 504

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V++ + + + M + +RI P  +HY C++ M  +   L EA   I +M  +P   +W  L+
Sbjct: 505 VDEALGYFEMMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEFIWSILI 564

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
             C   G  E+G YAAE+L   +      Y+ + N+Y  + RW++ ++  K MKE  + K
Sbjct: 565 AGCRNLGKQELGFYAAEQLLKLKLKDTETYVTLLNMYISAKRWQDVSRVRKLMKEEKLGK 624

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
               SWI I++++HSF    ++HP    ++ +L ELL      GY
Sbjct: 625 FNDWSWITIKEKIHSFKTTGRLHPHNAKMYELLEELLDKAKGSGY 669



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 223/450 (49%), Gaps = 23/450 (5%)

Query: 122 SWNTMVSGFL---RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           S NT + G L   +  EF     F K        +++ + +  +L  C +      +++I
Sbjct: 42  SINTQLDGSLEPIKPLEFHEALCFIKEE-----KKIEPSYYLPLLQECTKKNSVSEAQVI 96

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  +   G  +++ V  +L+  Y KCG+  + RK+F  +  RNV+ WTA+++G VQN   
Sbjct: 97  HAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNVVAWTALMTGYVQNSQP 156

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
              + +F  M      P++ T   ++ ACS + ++  G+Q+H  + K  L  D  I +AL
Sbjct: 157 NIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNAL 216

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
             +YSK GS++ +  +F+   E + +S T ++    +NG     ++ F +M+   I+ + 
Sbjct: 217 CSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNE 276

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             ++ VL +  V  +L LG+ +HSL IK  +  N  + N ++ +Y KCG ++++  +F +
Sbjct: 277 FTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQILFHK 336

Query: 419 MAPRNSVSWNSMIAA-----------FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           M   N V+WN+MI+            F+   +G +AL ++ E+   G +P   T  S+L 
Sbjct: 337 MGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTLSSVLT 396

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA-RSFIERMPVKPD 526
            CS +  + +G +      +   +S      A +V+M  + G + +A ++F+E M  +  
Sbjct: 397 VCSRLSALGQGEQLHAQTIKSGYLSDVVVGTA-LVNMYSKCGSIGKASKAFVE-MSTRT- 453

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           ++ W  ++   + HG SE      E + LA
Sbjct: 454 LISWTTMITGLAQHGHSEQALQLFEDMRLA 483


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 314/585 (53%), Gaps = 19/585 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           +L   +  G   LG  +H   IK+ FE    +NV+       +  SL+S Y +      A
Sbjct: 16  ILQACSDIGDVVLGEQIHGFVIKSGFE----ENVF-------VGTSLISMYSRSGNFDEA 64

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
            K+F+ +  +D    N M+  + + G      G F   + +G    D  +FT I+S C+ 
Sbjct: 65  EKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDY-TFTNIISTCNV 123

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
            E     K +H L    G   + +VGNA+IT Y K G      ++F  M  +N+I+WTA+
Sbjct: 124 EE----GKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTAL 179

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           ISG  +N   E+ +  F+++    +  +S    + +  CS  + L  G QIHG++ KL  
Sbjct: 180 ISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGY 239

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
             D+ I +AL+D+Y+KC + + A  +F         S   ILVGF +N   EE   +F+ 
Sbjct: 240 PCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLS 299

Query: 349 MVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            ++ AGI+ D    S +L +     SL  G+ +H+  IK+ F  +  V+N LI MY+KCG
Sbjct: 300 QLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCG 359

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            +ED+ + F+ M+  + +SWN++I+A++ HG G KAL LY+EM+ +G  P ++T L +L 
Sbjct: 360 IVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQ 419

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC++ GL   G+    +M   + I P  EHYAC+VD++GRAG L +A   I R P     
Sbjct: 420 ACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSEST 479

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
           L+W+ L+  C + GD  +GK A++ L    PD    Y+L++NIY+  G   E +K    M
Sbjct: 480 LLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEASKVRTTM 539

Query: 588 KEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
           K++ + KE G SW+EI+  VH FV     HP++  I+  L +LLR
Sbjct: 540 KDLKLSKEAGSSWVEIDNMVHYFVASGTDHPESIEIYARL-DLLR 583



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 203/396 (51%), Gaps = 13/396 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + ++ +  +IL AC      ++ + IH  V   G+EE V VG +LI+ Y + G+     K
Sbjct: 7   KFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEK 66

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  +++     +I    +    +  + +F+ +    ++PN  T+ + +  C+    
Sbjct: 67  VFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIISTCN---- 122

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           + EG+Q+HG+  K  +     + +A++ MY K G VE+A ++F    + + +S T ++ G
Sbjct: 123 VEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISG 182

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NG+ E+A+  F+++   G+E D  +++ +L       +L LG QIH L+IK  +  +
Sbjct: 183 YTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCD 242

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKALELYEEMK 451
             +   LI++Y+KC + + +  VF+ ++PR++ S+N+++  F  +  N    +    +++
Sbjct: 243 INIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLR 302

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA---CVVDMVGRA 508
           L G++P  V+F  LL   ++   + KG    + +      +  A H +    ++ M  + 
Sbjct: 303 LAGIKPDSVSFSRLLSLSANRASLVKG----RGLHAYSIKTGFAGHISVSNALITMYAKC 358

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G++ +A      M    D + W A++ A S+HG  E
Sbjct: 359 GIVEDAYQAFNSMSAN-DCISWNAIISAYSLHGQGE 393



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 15/147 (10%)

Query: 30  QDPTSSTSKLVL----DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85
           +DP    S+L L     + V  SRLLS+SA       G  LHA  IKT            
Sbjct: 292 EDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKT----------GF 341

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
                + N+L++ Y KC  + +A + F+ M   D +SWN ++S +  +G+ +     ++ 
Sbjct: 342 AGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQE 401

Query: 146 SLELGFYQLDQASFTIILSACDRSELS 172
             E GF   D+ +  +IL AC  S LS
Sbjct: 402 MEEKGFTP-DEITILVILQACTYSGLS 427


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/538 (33%), Positives = 287/538 (53%), Gaps = 1/538 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +L  Y  C     A + FD +  RD  SW T++S +   G  D   G F R L+LG  
Sbjct: 118 NCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLGII 177

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                  T+I+S  D S L L  K IH  +    +  ++++   +   Y KCG       
Sbjct: 178 PNFSIFSTLIMSFADPSMLDL-GKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEV 236

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
              +M  ++ +  T ++ G  Q     + L LF KM    +  +   +   + AC+ L  
Sbjct: 237 ATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAALGD 296

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+QIH    KL L+S++ + + L+D Y KC   E A Q FE   E +  S + ++ G
Sbjct: 297 LYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAG 356

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + Q+G  + A+++F  +   G+ ++  + + +       + L  G QIH+  IK    + 
Sbjct: 357 YCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAY 416

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
               + +I MYSKCG ++ + + F  +   ++V+W ++I A A HG   +AL L++EM+ 
Sbjct: 417 LSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQG 476

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            GV P  VTF+ LL+ACSH GLV +G +FL SMT+ + ++P  +HY C++D+  RAGLL+
Sbjct: 477 SGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLL 536

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
           EA   I  MP +PDV+ W++LLG C    + E+G  AA+ +F   P   A Y++M N+Y+
Sbjct: 537 EALEVIRSMPFEPDVMSWKSLLGGCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYA 596

Query: 573 CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
            +G+W E A+  K M E  + KE   SWI ++ +VH FVV D+ HPQ + I+  L EL
Sbjct: 597 LAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKEL 654



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 174/352 (49%), Gaps = 4/352 (1%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLG 251
           + N ++  Y  C S ++  + F ++  R++ +W  +IS   +    +E + LF++M  LG
Sbjct: 116 IDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLRMLDLG 175

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           +I PN   + + +M+ +    L  G+QIH  L ++   +D+ IE+ + +MY KCG ++ A
Sbjct: 176 II-PNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGWLDGA 234

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
                       V+ T ++VG+ Q     +A+ LF KM+  G+E+D  + S +L      
Sbjct: 235 EVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFVFSIILKACAAL 294

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             L  GKQIHS  IK    S   V   L++ Y KC   E + + F  +   N  SW+++I
Sbjct: 295 GDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALI 354

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           A + + G   +ALE+++ ++ +GV      + ++  ACS V  +  G +      +   +
Sbjct: 355 AGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLV 414

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           +  +   A ++ M  + G +  A      +  KPD + W A++ A + HG +
Sbjct: 415 AYLSGESA-MITMYSKCGKVDYAHQAFLAID-KPDTVAWTAIICAHAYHGKA 464



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 105/253 (41%), Gaps = 38/253 (15%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L+  A+ G   +  +    M  AGI I+P     +  + G   +L  GK  H+ + +   
Sbjct: 52  LISLAKQGKLRQVHEFIRNMDIAGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA- 110

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN F++N ++ MY  C     + + F ++  R+  SW ++I+A+   G   +A+ L+  
Sbjct: 111 NSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDEAVGLFLR 170

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKG---------MEFLKSMTEVHRIS-------- 492
           M   G+ P    F +L+ + +   +++ G         +EF   ++    IS        
Sbjct: 171 MLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISNMYVKCGW 230

Query: 493 -----------PRAEHYACVVDMVG-------RAGLLIEARSFIERMPVKPDVLVWQALL 534
                       R    AC   MVG       R  LL+ ++   E   V+ D  V+  +L
Sbjct: 231 LDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISE--GVELDGFVFSIIL 288

Query: 535 GACSIHGDSEMGK 547
            AC+  GD   GK
Sbjct: 289 KACAALGDLYTGK 301


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 328/634 (51%), Gaps = 50/634 (7%)

Query: 21  VSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT------F 74
           ++ +   I    T+S +  + +  +D +RL+       + HL   + A + +        
Sbjct: 4   ITRYTRTITLSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDAL 63

Query: 75  EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG 134
           + FD  +V +V    V WNS++   L C  +  A +LFD+MP ++ +SW TMV+G+L+ G
Sbjct: 64  KLFDRMSVRDV----VSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFG 119

Query: 135 EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
             ++    F          LD                               + ++V   
Sbjct: 120 RVELAQRLF----------LDM------------------------------HVKDVAAW 139

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           NA++  YF+ G    G ++F EM VR+VI+WT++I GL  N   EE L +F KM    + 
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P   T+   + AC+       G Q+HG + KL       I  +L+  Y+ C  +E A +I
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F      + V  T +L  +  N   ++A+++F  M K G   + +  S  L       +L
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEAL 319

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK+IH++ IK    ++ FV N L+ MY++CG++  ++ VF  +  ++ VSWNS+I   
Sbjct: 320 DKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGS 379

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A+HG G  AL  + +M   GV+P ++TF  LL ACS  G++ KG  F + ++       R
Sbjct: 380 AQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLR 439

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HYAC+VD++GR G L EA   +  MPVK + ++W ALL AC +H + E+ + AA+ + 
Sbjct: 440 PQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHIL 499

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
             +P+  + Y+L++NIY+ +GRW + ++   +MK+ G+ K+ G SW+ +  + H F+  D
Sbjct: 500 DLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSAD 559

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP ++ I+  L  L + + + GYVP+++F LH
Sbjct: 560 RSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALH 593


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 304/554 (54%), Gaps = 3/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLE 148
           ++ N+L++ Y K   + +   LF+ +  +D +SW ++++GF + G F+M     F+  + 
Sbjct: 188 IVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG-FEMEALQVFREMIV 246

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G +  ++  F     AC         + IH L      + ++ VG +L   Y +C +  
Sbjct: 247 EGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLD 306

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S R  F  +   ++++W ++++      L  E L LF +M    + P+ +T    + AC 
Sbjct: 307 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 366

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  AL  GR IH  L KL L  D+ + ++L+ MY++C  +  A  +F   ++ D V+   
Sbjct: 367 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           IL   AQ+   EE ++LF  + K+   +D   ++ VL          + KQ+H+   K+ 
Sbjct: 427 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 486

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELY 447
              +  ++N LI+ Y+KCG L+D++++F  M   R+  SW+S+I  +A+ G   +A +L+
Sbjct: 487 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLF 546

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+  G+ P  VTF+ +L ACS VG VN+G  +   M   + I P  EH +C+VD++ R
Sbjct: 547 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 606

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA +FI++MP +PD+++W+ LL A  +H D EMGK AAE +    P   A Y+L+
Sbjct: 607 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 666

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            NIY+ SG W E A+  K M+  GV K  G SW++++ ++  F+V+D+ HP+++ I+ +L
Sbjct: 667 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726

Query: 628 AELLRLMIDEGYVP 641
             +   MI  GYVP
Sbjct: 727 ELIGMEMIKAGYVP 740



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 225/455 (49%), Gaps = 19/455 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+ N L++ Y +C    +A ++FD+MP R+ VSW ++++  ++NG      G F   L 
Sbjct: 86  TVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 149 LGFYQLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            G    DQ +    + AC  +EL  V   + +H          ++ V NAL+T Y K G 
Sbjct: 146 SG-TAADQFALGSAVRAC--TELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGL 202

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVM 265
              G  +F  ++ +++I+W ++I+G  Q     E L++F +M + G  +PN   + S+  
Sbjct: 203 VDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFR 262

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC  + +   G QIHG+  K  L  DL +  +L DMY++C +++ A   F   E  D VS
Sbjct: 263 ACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVS 322

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              I+  ++  G   EA+ LF +M  +G+  D   V  +L       +L  G+ IHS ++
Sbjct: 323 WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLV 382

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K     +  V N L++MY++C DL  ++ VF  +  ++ V+WNS++ A A+H +  + L+
Sbjct: 383 KLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLK 442

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------A 499
           L+  +         ++  ++L A + +G       + + + +VH  + +A          
Sbjct: 443 LFSLLNKSEPSLDRISLNNVLSASAELG-------YFEMVKQVHAYAFKAGLVDDRMLSN 495

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            ++D   + G L +A    E M    DV  W +L+
Sbjct: 496 TLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLI 530



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 211/441 (47%), Gaps = 49/441 (11%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             +GN LIT Y +C +  S R+VF EM  RN ++W +VI+  VQN    + L LF  M  
Sbjct: 86  TVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
                +     S+V AC+ L  +  GRQ+H    K    SDL +++AL+ MYSK G V+D
Sbjct: 146 SGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDD 205

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVF 368
            + +FE  ++ D +S   I+ GFAQ GFE EA+Q+F +M+  G    PN     +     
Sbjct: 206 GFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGSH-HPNEFHFGSAFRAC 264

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G   S   G+QIH L IK     + +V   L +MY++C +L+ +   F R+   + VSWN
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWN 324

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC------SHVGLVNKGMEFL 482
           S++ A++  G   +AL L+ EM+  G+ P  +T   LL AC       H  L++  +  L
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
               +V   +     YA   D+     +  E +          DV+ W ++L AC+ H  
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKD--------QDVVTWNSILTACAQHNH 436

Query: 543 SEMGKYAAEKLF--LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            E       KLF  L + +     I + N+ S S              E+G        +
Sbjct: 437 PE----EVLKLFSLLNKSEPSLDRISLNNVLSASA-------------ELG--------Y 471

Query: 601 IEIEKQVHSF-----VVDDKM 616
            E+ KQVH++     +VDD+M
Sbjct: 472 FEMVKQVHAYAFKAGLVDDRM 492



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           + + ++ +LS SA+ G+F +   +HA   K            + +  ++ N+L+  Y KC
Sbjct: 455 DRISLNNVLSASAELGYFEMVKQVHAYAFKA----------GLVDDRMLSNTLIDTYAKC 504

Query: 103 DQMRNAVKLFDDM-PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A++LF+ M   RD  SW++++ G+ + G     F  F R   LG  + +  +F  
Sbjct: 505 GSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGI-RPNHVTFIG 563

Query: 162 ILSACDR 168
           +L+AC R
Sbjct: 564 VLTACSR 570


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 310/580 (53%), Gaps = 24/580 (4%)

Query: 71   IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
            ++ FE   ++N+       + WN  L  +++  ++  A  +FD+MP RD VSWNTM+SG+
Sbjct: 765  LRVFEDIIDKNL-------ISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGY 817

Query: 131  LRNGEFDMGFGFFKRSLELGFYQLDQASFT------IILSACDRSELSLVSKMIHCLVYL 184
            +  G FD  F FF    + G   +  + FT       + SAC         K IH  +  
Sbjct: 818  VSFGLFDDAFRFFSEMQKAG---IRPSGFTYSTLLSFVSSACR-------GKQIHASMIR 867

Query: 185  CGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G +   V VGN+LI  Y K G       VF  M   ++I+W ++I    ++      L+
Sbjct: 868  NGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALR 927

Query: 244  LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
             FV M     +P+  T  + +  CS LQ L +G QI  +  ++   S+  + SA +D++S
Sbjct: 928  QFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFS 987

Query: 304  KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
            KC  +ED+ ++FE   + D V    ++  +A +GF E A+QLFV  ++  +      +S 
Sbjct: 988  KCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSI 1047

Query: 364  VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            VL    +   +  G QIHSL++KS   S+  V + L+ MY+K G ++ ++K F+++  R+
Sbjct: 1048 VLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARD 1107

Query: 424  SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
             +SWN+MI   A +G   KALE+++E+ + G  P ++T   +L AC+  GLV++G+    
Sbjct: 1108 LISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFS 1167

Query: 484  SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            SM + + + P  EHYAC+VDM+ R G L EA   +E MP +P  L+W +LL AC I+GD 
Sbjct: 1168 SMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDL 1227

Query: 544  EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
               +  AE++   +P S  PY+++A  Y   GRW+   +  + MKE GV K  G SWI I
Sbjct: 1228 RFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWIGI 1287

Query: 604  EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            +  V  F  +  +H     I+ +L  L++ + D+GY   +
Sbjct: 1288 KNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYASQQ 1327



 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/592 (30%), Positives = 300/592 (50%), Gaps = 74/592 (12%)

Query: 72  KTFEPFDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           K+ E FD+     +P+     WN ++S + K   +  A +LF++MP ++ ++WN+M+ G+
Sbjct: 91  KSLELFDS-----MPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGY 145

Query: 131 LRNGEFDMGFGFFKR-SLE-LGFYQLDQASFTIILSACDRSELSLVSKMIHC-------- 180
             NG      G FK  SL  L  +  D      ++ AC         K IH         
Sbjct: 146 ACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVE 205

Query: 181 --------LVYLCGYEEEVTVGN---------------ALITSYFKCGSSSSGRKVFGEM 217
                   LV L G   ++   N               ALI+ Y  CG  +  R++F   
Sbjct: 206 FDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLK 265

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
               V+ W ++ISG V N    E L+LF  M    +  +  T+ S + ACS L  + +G 
Sbjct: 266 SNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGI 325

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKC-------------------------------G 306
           Q+H  ++K+   +D+ I+SAL+DMYSKC                               G
Sbjct: 326 QVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCG 385

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            ++DA QIF+       +S   ++VGF+QN    EA+ LF +M K G+ +D   ++ V+ 
Sbjct: 386 RIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVIS 445

Query: 367 VFGVDTSLGLGKQI--HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
                +SL LG+QI   + II  +F  +  ++  L++ Y KCG +E   K+F RM   + 
Sbjct: 446 ACASISSLELGEQIFARATIIGLEF--DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDE 503

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           V WNSM+  +A +G+G +AL ++++M+  GV+PTD+TF+ +L AC H GLV +G ++  +
Sbjct: 504 VPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYA 563

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M   + I+P  EHY+C+VD+  RAGLL +A + IE+MP+K D  +W ++L  C  HG++ 
Sbjct: 564 MKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNI 623

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           +GK  A+++    P++   Y+ ++ IY+    W   A+  K M +  + K+T
Sbjct: 624 LGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKKIPKDT 675



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 135/568 (23%), Positives = 242/568 (42%), Gaps = 132/568 (23%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV-IWNSLLSFYLKCDQM 105
           ++R L      G  + G  LH  F+K+           V ++ + I N LL  Y +C+ M
Sbjct: 9   LARQLGSCNNYGSIYRGRXLHILFLKS----------GVLHSVLSIGNRLLQMYSRCNSM 58

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           R A +LF++MP R+  SWNTM+ G+L++G                               
Sbjct: 59  REAQQLFEEMPKRNCFSWNTMIEGYLKSGS------------------------------ 88

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
                L L   M H         ++    N +I+ + K G+    R++F EM  +N I W
Sbjct: 89  -KGKSLELFDSMPH---------KDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAW 138

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINP------NSLTYLSSVMACSGLQALCEGRQI 279
            ++I G   N   +E + LF  + L   NP      ++    + V AC+ L AL  G+QI
Sbjct: 139 NSMIHGYACNGRPKEAVGLFKDLSL---NPLERFCGDTFVLATVVGACTNLGALDCGKQI 195

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ---- 335
           H  +    ++ D  + S+L+++Y KCG ++ A  +    +E D  S++ ++ G+A     
Sbjct: 196 HARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRM 255

Query: 336 ---------------------------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
                                      N    EA++LF  M + G++ D +  ++VL   
Sbjct: 256 NDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSAC 315

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK----------------------- 405
                +  G Q+H+ + K  FT++  +++ L++MYSK                       
Sbjct: 316 STLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLN 375

Query: 406 --------CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
                   CG ++D+ ++F  M  ++ +SWNSMI  F+++    +AL+L+ EM   G+  
Sbjct: 376 SMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRM 435

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMT----EVHRISPRAEHYACVVDMVGRAGLLIE 513
              +   ++ AC+ +  +  G +     T    E  +I   +     +VD   + GL+  
Sbjct: 436 DKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTS-----LVDFYCKCGLVEH 490

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHG 541
            R   +RM +K D + W ++L   + +G
Sbjct: 491 GRKLFDRM-MKSDEVPWNSMLMGYATNG 517



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 158/362 (43%), Gaps = 74/362 (20%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV-TVGNALITSYFKCGSSSSGRK 212
           LD  S    L +C+        + +H L    G    V ++GN L+  Y +C S    ++
Sbjct: 4   LDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQ 63

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F EM  RN  +W  +I G +++    + L+LF  M      P+   +            
Sbjct: 64  LFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM------PHKDAF------------ 105

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
                      W + +             ++K G++E A ++F      +G++   ++ G
Sbjct: 106 ----------SWNVVISG-----------FAKEGNLEVARRLFNEMPWKNGIAWNSMIHG 144

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEI---DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +A NG  +EA+ LF  +    +E    D  +++ V+G      +L  GKQIH+ I+  + 
Sbjct: 145 YACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEV 204

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS----------------------- 426
             +  + + L+N+Y KCGD++ +  V + M   ++ S                       
Sbjct: 205 EFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCL 264

Query: 427 --------WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
                   WNSMI+ +  +    +ALEL+  M+ +GV+    TF S+L ACS +G++++G
Sbjct: 265 KSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQG 324

Query: 479 ME 480
           ++
Sbjct: 325 IQ 326



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 110/457 (24%), Positives = 190/457 (41%), Gaps = 57/457 (12%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           +I  SL+ FY KC  + +  KLFD M   D V WN+M+ G+  NG        F +   +
Sbjct: 473 IISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSV 532

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG----NALITSYFKCG 205
           G    D  +F  +LSACD   L    +      Y    +  +  G    + ++  Y + G
Sbjct: 533 GVQPTD-ITFVGVLSACDHCGLVEEGRK---WFYAMKLDYHINPGIEHYSCMVDLYARAG 588

Query: 206 SSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
                  +  +M ++ +   W++V+ G V +     G K+  K  + L   NS  Y+   
Sbjct: 589 LLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKV-AKRIIDLDPENSGAYVQ-- 645

Query: 265 MACSGLQALCE--GR--QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
              SG+ A  E  GR  Q+  +++   +  D   + A        G         E  E 
Sbjct: 646 --LSGIYATFEDWGRSAQVRKLMYDKKIPKDTSFDIA--------GE--------EGXEG 687

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
           L   +  V  +   QN      ++L  +  +   E D   ++A   +   D         
Sbjct: 688 LSSETKEVTKMKQRQN----LVLRLVAEKKRECDERDQKFMAARRTLLEFD--------- 734

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
             ++IK  F ++ F+ N  +++YS+ G   DS++VF  +  +N +SWN  + AF R G  
Sbjct: 735 --MLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGEL 792

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +A ++++EM    V    V++ +++      GL +    F   M +   I P    Y+ 
Sbjct: 793 ERARDVFDEMPKRDV----VSWNTMISGYVSFGLFDDAFRFFSEMQKAG-IRPSGFTYST 847

Query: 501 VVDMVGRA--GLLIEARSFIERMPVKPDVLVWQALLG 535
           ++  V  A  G  I A S I       +V+V  +L+G
Sbjct: 848 LLSFVSSACRGKQIHA-SMIRNGVDLSNVVVGNSLIG 883



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDS 412
           +++D + ++  LG      S+  G+ +H L +KS    +   + N L+ MYS+C  + ++
Sbjct: 2   VDLDLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREA 61

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            ++F  M  RN  SWN+MI  + + G+  K+LEL++ M
Sbjct: 62  QQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM 99


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/586 (31%), Positives = 310/586 (52%), Gaps = 12/586 (2%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  +HA  IK          +   +  ++ N+L++ Y K   + +   LF+ +  
Sbjct: 162 GDLGLGRQVHAQAIK----------WESGSDLIVQNALVTMYSKSGSVGDGFALFERIRD 211

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL-VSK 176
           +D +SW ++++G  + G        F+  +  G +  ++  F  +  AC     SL   +
Sbjct: 212 KDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGE 271

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH +      +     G +L   Y +C    S RKVF  +   ++++W ++I+      
Sbjct: 272 QIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNSLINAFSAKG 331

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
           L  E + LF +M    + P+ +T ++ + AC G  AL +GR IH  L KL L  D+ + +
Sbjct: 332 LLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSN 391

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+ MY++C     A  +F    + D V+   IL    Q+   E+  +LF  + ++   +
Sbjct: 392 SLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKLFSLLHRSMPSL 451

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D   ++ VL          + KQ+H+   K     +  ++NGLI+ Y+KCG L+D+ K+F
Sbjct: 452 DRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAKCGSLDDANKLF 511

Query: 417 SRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
             M   R+  SW+S+I  +A+ G   +AL+L+  M+  GV+P  VTF+ +L ACS VGLV
Sbjct: 512 EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLTACSRVGLV 571

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           ++G  +   M   + I P  EH +CV+D++ RAG L EA  F+++MP +PD+++W+ LL 
Sbjct: 572 DEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPFEPDIIMWKTLLA 631

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           A   H D +MGK AAE +    P   A Y+L+ NIY+ SG W E A+  K M+  GV K 
Sbjct: 632 ASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGVQKS 691

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            G SWI+++ ++  F+V+D+ HP++D I+ +L  +   M+  GY+P
Sbjct: 692 PGKSWIKLKGELKVFIVEDRSHPESDEIYTMLEVIGLEMVKAGYIP 737



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/358 (34%), Positives = 180/358 (50%), Gaps = 20/358 (5%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           + N LIT Y +CG+  S R VF  M  RN ++W AVI+   QN    + + LF  M    
Sbjct: 84  LSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLRSG 143

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
             P+     S++ ACS L  L  GRQ+H    K    SDL +++AL+ MYSK GSV D +
Sbjct: 144 TMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVGDGF 203

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV---SAVLGVFG 369
            +FE   + D +S   I+ G AQ G E +A+Q+F +M+  G+   PN     S       
Sbjct: 204 ALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVH-HPNEFHFGSVFRACSV 262

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           V  SL  G+QIH + +K     N +    L +MY++C +L+ + KVF R+   + VSWNS
Sbjct: 263 VVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSWNS 322

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           +I AF+  G   +A+ L+ EM+  G+ P  +T ++LL AC        G + L     +H
Sbjct: 323 LINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACV-------GYDALHQGRSIH 375

Query: 490 RISPRAEHYACVVDMVGRAGLLIEAR--SFIERMPV-----KPDVLVWQALLGACSIH 540
               +      V+  V  + L + AR   F   M V       DV+ W ++L AC  H
Sbjct: 376 SYLVKLGLGGDVI--VSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQH 431



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 132/476 (27%), Positives = 226/476 (47%), Gaps = 24/476 (5%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T++ N L++ Y +C    +A  +FD M  R+ VSW  +++   +N       G F   L 
Sbjct: 82  TILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 141

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    DQ +    + AC       + + +H          ++ V NAL+T Y K GS  
Sbjct: 142 SGTMP-DQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            G  +F  +R +++I+W ++I+GL Q     + L++F +M   G+ +PN   + S   AC
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 268 S-GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           S  + +L  G QIHG+  K  L  +     +L DMY++C  ++ A ++F   E  D VS 
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSW 320

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLII 385
             ++  F+  G   EAM LF +M  +G+  D   V A+L    G D +L  G+ IHS ++
Sbjct: 321 NSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYD-ALHQGRSIHSYLV 379

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K     +  V+N L++MY++C D   ++ VF     R+ V+WNS++ A  +H +     +
Sbjct: 380 KLGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFK 439

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR------AEHYA 499
           L+  +         ++  ++L A + +G       + + + +VH  + +      A    
Sbjct: 440 LFSLLHRSMPSLDRISLNNVLSASAELG-------YFEMVKQVHAYAFKVGLVGDAMLSN 492

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            ++D   + G L +A    E M    DV  W +L     I G ++ G YA E L L
Sbjct: 493 GLIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSL-----IVGYAQFG-YAKEALDL 542



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           + + ++ +LS SA+ G+F +   +HA   K            +    ++ N L+  Y KC
Sbjct: 452 DRISLNNVLSASAELGYFEMVKQVHAYAFKV----------GLVGDAMLSNGLIDTYAKC 501

Query: 103 DQMRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A KLF+ M   RD  SW++++ G+ + G        F R   LG  + +  +F  
Sbjct: 502 GSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGV-KPNHVTFVG 560

Query: 162 ILSACDR 168
           +L+AC R
Sbjct: 561 VLTACSR 567


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 184/512 (35%), Positives = 295/512 (57%), Gaps = 13/512 (2%)

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITS 200
            F+ S     Y + Q+    I S    S  S + +++I  L Y  G+     +G+ L++ 
Sbjct: 52  LFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGF-----IGDRLVSM 106

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLT 259
           YFK G     +++F EM  +++++W +++SGL         L  F +M       PN +T
Sbjct: 107 YFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVT 166

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
            LS V AC+ + AL EG+ +HG++ KL +     + ++L++MY K G ++ A Q+FE   
Sbjct: 167 LLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 226

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
               VS   ++V    NG+ E+ M LF  M +AGI  D   + A+L      T  GLG+Q
Sbjct: 227 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRAC---TDTGLGRQ 283

Query: 380 ---IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
              IH+ I +  F ++  +   L+N+Y+K G L  S  +F  +  R+ ++W +M+A +A 
Sbjct: 284 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAV 343

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           H  G +A++L++ M  EGVE   VTF  LL ACSH GLV +G ++ + M+EV+R+ PR +
Sbjct: 344 HACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLD 403

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HY+C+VD++GR+G L +A   I+ MP++P   VW ALLGAC ++G+ E+GK  AE+L   
Sbjct: 404 HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSL 463

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            P     YI+++NIYS +G W++ +K    MKE  + +  G S+IE   ++H FVV D++
Sbjct: 464 DPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQL 523

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           HP++D IH  L EL+R + + G  P   F+LH
Sbjct: 524 HPRSDEIHTKLEELIRKIREAGCAPKTEFVLH 555



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 219/462 (47%), Gaps = 46/462 (9%)

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           ++HA  IK+    D            I + L+S Y K     +A +LFD+MP +D VSWN
Sbjct: 83  AIHARVIKSLNYSDG----------FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWN 132

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           +++SG    G        F R       Q ++ +   ++SAC         K +H +V  
Sbjct: 133 SLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVK 192

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G   +  V N+LI  Y K G   +  ++F EM VR++++W +++     N   E+G+ L
Sbjct: 193 LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDL 252

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    INP+  T ++ + AC+      +   IH  + +    +D+ I +AL+++Y+K
Sbjct: 253 FNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAK 312

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G +  +  IFE  ++ D ++ T +L G+A +    EA++LF  MVK G+E+D    + +
Sbjct: 313 LGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHL 372

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-- 420
           L        +  GK+    I+   +   P +++   ++++  + G LED+ ++   M   
Sbjct: 373 LSACSHSGLVEEGKKYFE-IMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME 431

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD-VTFLSLLHACSHVGL--- 474
           P + V W +++ A   +GN    +EL +E+  +L  ++P+D   ++ L +  S  GL   
Sbjct: 432 PSSGV-WGALLGACRVYGN----VELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 486

Query: 475 --------------VNKGMEFLKSMTEVHR------ISPRAE 496
                          N G  F++   ++HR      + PR++
Sbjct: 487 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSD 528


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 323/602 (53%), Gaps = 15/602 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L + A+E    +G  +H   +K     D + V N        N+L+  Y K   + ++ 
Sbjct: 282 VLPVCAREREIGVGKGVHGWAVKL--SLDKELVVN--------NALMDMYSKWGCIIDSQ 331

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII--LSAC- 166
            +F     ++ VSWNTMV GF   G+    F   ++ L  G   +     TI+  +  C 
Sbjct: 332 MIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLA-GSEDVKADEVTILNAVPVCF 390

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           D S L  + K +HC      +  +  + NA + SY KCGS S  ++VF  +R + + +W 
Sbjct: 391 DESVLPSL-KELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWN 449

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+I G  Q+      L   ++M    + P++ T  S + ACS L++L  G+++HG + + 
Sbjct: 450 ALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRN 509

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L+ DL +  +++ +Y  CG +     +F+  E+   VS   ++ G  QNGF E A+ LF
Sbjct: 510 WLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLF 569

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            +MV  GI+     +  V G   +  SL LG++ H+  +K     N F+   +I+MY+K 
Sbjct: 570 RQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKN 629

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G +  S KVF+ +  +++ SWN+MI  +  HG   +A++L+EEM+  G  P D+TFL +L
Sbjct: 630 GAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVL 689

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+H GL+++G+ +L  M     + P  +HYACV+DM+GRAG L  A      M  +PD
Sbjct: 690 TACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPD 749

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
           V +W +LL  C IH + EMG+  A KLF+ +P+ P  Y+L++N+Y+  G+W +  +  +R
Sbjct: 750 VGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQR 809

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           MKEM + K+ G SWIE+  +V SFVV ++     + I  + + L   +   GY P+   +
Sbjct: 810 MKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSV 869

Query: 647 LH 648
            H
Sbjct: 870 QH 871



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 228/505 (45%), Gaps = 26/505 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+SFY     + +A+KLFD MP R+ VSWN+M+  F  NG+              G
Sbjct: 224 VGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDD-------------G 270

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +  D A+   +L  C R     V K +H        ++E+ V NAL+  Y K G     
Sbjct: 271 AFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDS 330

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTYLSSVMACS 268
           + +F     +NV++W  ++ G            L  +M  G   +  + +T L++V  C 
Sbjct: 331 QMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCF 390

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               L   +++H    K     D  + +A +  Y+KCGS+  A ++F         S   
Sbjct: 391 DESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNA 450

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+AQ+     ++   ++M  +G+  D   V ++L       SL LGK++H  II++ 
Sbjct: 451 LIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 510

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              + FV   ++++Y  CG+L     +F  M   + VSWN++I    ++G   +AL L+ 
Sbjct: 511 LERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFR 570

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M L G++P  ++ +++  ACS +  +  G E   +    H +   A     ++DM  + 
Sbjct: 571 QMVLYGIQPCGISMMTVFGACSLLPSLRLGRE-AHAYALKHLLEDNAFIACSIIDMYAKN 629

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYI 565
           G + ++      +  K     W A++    +HG ++     A KLF     +   P    
Sbjct: 630 GAITQSSKVFNGLKEKS-AASWNAMIMGYGMHGRAK----EAIKLFEEMQRTGRNPDDLT 684

Query: 566 LMANIYSC--SGRWKERAKAIKRMK 588
            +  + +C  SG   E  + + +MK
Sbjct: 685 FLGVLTACNHSGLLHEGLRYLDQMK 709



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 214/480 (44%), Gaps = 30/480 (6%)

Query: 7   FLKLNSNFPFCSSLVSPFITKIIQD---PTSSTSKLVLDNYVDISRLLSISAKEGHFHLG 63
           FL+  SNF     L   F  +++Q+      S+S + L     +  LL  S K     +G
Sbjct: 46  FLRRISNFCETGDLDKSF--RVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMG 103

Query: 64  PSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW 123
             +H                 + +  V+   +++ Y  C    ++   FD +  ++   W
Sbjct: 104 RKIHHLV---------SGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQW 154

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           N ++S + RN  +      F + +       D  +F  ++ AC       +   +H LV 
Sbjct: 155 NAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVV 214

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G  E++ VGNAL++ Y   G  S   K+F  M  RN+++W ++I     N        
Sbjct: 215 KTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG------- 267

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
                  G   P+  T ++ +  C+  + +  G+ +HG   KL+L  +L + +ALMDMYS
Sbjct: 268 -----DDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYS 322

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           K G + D+  IF+     + VS   ++ GF+  G       L  +M+    ++  + V+ 
Sbjct: 323 KWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVT- 381

Query: 364 VLGVFGV---DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +L    V   ++ L   K++H   +K +F  +  + N  +  Y+KCG L  + +VF  + 
Sbjct: 382 ILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIR 441

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +   SWN++I  +A+  +   +L+ + +MK  G+ P + T  SLL ACS +  +  G E
Sbjct: 442 SKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKE 501



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 177/382 (46%), Gaps = 34/382 (8%)

Query: 127 VSGFLRNGEFDMGFGFFKR------SLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +S F   G+ D  F   +       S    F  + +A   ++ ++  R ++ +  K+ H 
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHL 109

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +        +  +   +IT Y  CGS    R  F  +R +N+  W AVIS   +N+LY E
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 241 GLKLFVKM----HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            L++F+KM    HL    P++ T+   + AC+G+  +  G  +HG++ K  L  DL + +
Sbjct: 170 VLEMFIKMISKTHL---LPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGN 226

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           AL+  Y   G V DA ++F+   E + VS   ++  F+ NG +   M             
Sbjct: 227 ALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFMP------------ 274

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D   V  VL V   +  +G+GK +H   +K        VNN L++MYSK G + DS  +F
Sbjct: 275 DVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIF 334

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTDVTFLSLLHACSHVGL 474
                +N VSWN+M+  F+  G+     +L  +M    E V+  +VT L+ +  C    +
Sbjct: 335 KLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESV 394

Query: 475 VNKGMEFLKSMTEVHRISPRAE 496
                  L S+ E+H  S + E
Sbjct: 395 -------LPSLKELHCYSLKQE 409



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 138/278 (49%), Gaps = 34/278 (12%)

Query: 276 GRQIHGIL-WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           GR+IH ++     L+SD  + + ++ MY+ CGS +D+   F+     +      ++  ++
Sbjct: 103 GRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYS 162

Query: 335 QNGFEEEAMQLFVKMV-KAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +N    E +++F+KM+ K  +  D    P ++ A  G+    + +G+G  +H L++K+  
Sbjct: 163 RNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGI----SDVGIGLAVHGLVVKTGL 218

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + FV N L++ Y   G + D++K+F  M  RN VSWNSMI  F+ +G+    +     
Sbjct: 219 VEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFM----- 273

Query: 450 MKLEGVEPTDVTFLSLLHACSH---VGLVNKGME--FLKSMTEVHRISPRAEHYACVVDM 504
                  P   T +++L  C+    +G V KG+    +K   +   +   A     ++DM
Sbjct: 274 -------PDVATVVTVLPVCAREREIG-VGKGVHGWAVKLSLDKELVVNNA-----LMDM 320

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
             + G +I+++  I ++    +V+ W  ++G  S  GD
Sbjct: 321 YSKWGCIIDSQ-MIFKLNNNKNVVSWNTMVGGFSAEGD 357


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 304/554 (54%), Gaps = 3/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLE 148
           ++ N+L++ Y K   + +   LF+ +  +D +SW ++++GF + G F+M     F+  + 
Sbjct: 171 IVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG-FEMEALQVFREMIV 229

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G +  ++  F     AC         + IH L      + ++ VG +L   Y +C +  
Sbjct: 230 EGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARCKNLD 289

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S R  F  +   ++++W ++++      L  E L LF +M    + P+ +T    + AC 
Sbjct: 290 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 349

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  AL  GR IH  L KL L  D+ + ++L+ MY++C  +  A  +F   ++ D V+   
Sbjct: 350 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 409

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           IL   AQ+   EE ++LF  + K+   +D   ++ VL          + KQ+H+   K+ 
Sbjct: 410 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 469

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELY 447
              +  ++N LI+ Y+KCG L+D++++F  M   R+  SW+S+I  +A+ G   +A +L+
Sbjct: 470 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLF 529

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+  G+ P  VTF+ +L ACS VG VN+G  +   M   + I P  EH +C+VD++ R
Sbjct: 530 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 589

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA +FI++MP +PD+++W+ LL A  +H D EMGK AAE +    P   A Y+L+
Sbjct: 590 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 649

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            NIY+ SG W E A+  K M+  GV K  G SW++++ ++  F+V+D+ HP+++ I+ +L
Sbjct: 650 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 709

Query: 628 AELLRLMIDEGYVP 641
             +   MI  GYVP
Sbjct: 710 ELIGMEMIKAGYVP 723



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 207/429 (48%), Gaps = 19/429 (4%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  R+ VSW ++++  ++NG      G F   L  G    DQ +    + AC  +EL  V
Sbjct: 95  MYGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSG-TAADQFALGSAVRAC--TELGDV 151

Query: 175 --SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
              + +H          ++ V NAL+T Y K G    G  +F  ++ +++I+W ++I+G 
Sbjct: 152 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 211

Query: 233 VQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
            Q     E L++F +M + G  +PN   + S+  AC  + +   G QIHG+  K  L  D
Sbjct: 212 AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 271

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L +  +L DMY++C +++ A   F   E  D VS   I+  ++  G   EA+ LF +M  
Sbjct: 272 LYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRD 331

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G+  D   V  +L       +L  G+ IHS ++K     +  V N L++MY++C DL  
Sbjct: 332 SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSS 391

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           ++ VF  +  ++ V+WNS++ A A+H +  + L+L+  +         ++  ++L A + 
Sbjct: 392 AMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAE 451

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKP 525
           +G       + + + +VH  + +A           ++D   + G L +A    E M    
Sbjct: 452 LG-------YFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNR 504

Query: 526 DVLVWQALL 534
           DV  W +L+
Sbjct: 505 DVFSWSSLI 513



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 199/427 (46%), Gaps = 53/427 (12%)

Query: 209 SGRKVFGE----MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           +G  V G     M  RN ++W +VI+  VQN    + L LF  M       +     S+V
Sbjct: 83  AGNTVLGNHLITMYGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAV 142

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            AC+ L  +  GRQ+H    K    SDL +++AL+ MYSK G V+D + +FE  ++ D +
Sbjct: 143 RACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLI 202

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHS 382
           S   I+ GFAQ GFE EA+Q+F +M+  G    PN     +     G   S   G+QIH 
Sbjct: 203 SWGSIIAGFAQQGFEMEALQVFREMIVEGSH-HPNEFHFGSAFRACGAVGSWEYGEQIHG 261

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
           L IK     + +V   L +MY++C +L+ +   F R+   + VSWNS++ A++  G   +
Sbjct: 262 LSIKYRLDRDLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSE 321

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHAC------SHVGLVNKGMEFLKSMTEVHRISPRAE 496
           AL L+ EM+  G+ P  +T   LL AC       H  L++  +  L    +V   +    
Sbjct: 322 ALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLS 381

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-- 554
            YA   D+     +  E +          DV+ W ++L AC+ H   E       KLF  
Sbjct: 382 MYARCSDLSSAMDVFHEIKD--------QDVVTWNSILTACAQHNHPE----EVLKLFSL 429

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF---- 610
           L + +     I + N+ S S              E+G        + E+ KQVH++    
Sbjct: 430 LNKSEPSLDRISLNNVLSASA-------------ELG--------YFEMVKQVHAYAFKA 468

Query: 611 -VVDDKM 616
            +VDD+M
Sbjct: 469 GLVDDRM 475



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 12/125 (9%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           + ++ +LS SA+ G+F +   +HA   K            + +  ++ N+L+  Y KC  
Sbjct: 440 ISLNNVLSASAELGYFEMVKQVHAYAFKA----------GLVDDRMLSNTLIDTYAKCGS 489

Query: 105 MRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           + +A++LF+ M   RD  SW++++ G+ + G     F  F R   LG  + +  +F  +L
Sbjct: 490 LDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEAFDLFSRMRSLGI-RPNHVTFIGVL 548

Query: 164 SACDR 168
           +AC R
Sbjct: 549 TACSR 553


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 303/551 (54%), Gaps = 5/551 (0%)

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWN--TMVSGFLRNGEFDMGFGFFK-RSLELGFYQLDQA 157
           K +     V + DD  +R T S      +   +    +      F+   LE   + +  +
Sbjct: 59  KVEYRERKVAVLDDTQIRKTSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDVGGS 118

Query: 158 SFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           ++  ++SAC     +  V ++ + +V   G+E ++ V N ++  + KCG     RK+F E
Sbjct: 119 TYDALVSACVGLRSIRGVKRVFNYMVN-SGFEPDLYVMNRVLFVHVKCGLMLDARKLFDE 177

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  +++ +W  +I G V +  + E   LF+ M     +  S T+ + + A +GL  +  G
Sbjct: 178 MPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVG 237

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           RQIH    K  +  D  +  AL+DMYSKCGS+EDA  +F+   E   V    I+  +A +
Sbjct: 238 RQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALH 297

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G+ EEA+  + +M  +G +ID   +S V+ +     SL   KQ H+ +++  + ++   N
Sbjct: 298 GYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVAN 357

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             L++ YSK G +ED+  VF+RM  +N +SWN++IA +  HG G +A+E++E+M  EG+ 
Sbjct: 358 TALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMI 417

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P  VTFL++L ACS+ GL  +G E   SM+  H++ PRA HYAC+V+++GR GLL EA  
Sbjct: 418 PNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYE 477

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
            I   P KP   +W  LL AC +H + E+GK AAE L+  +P+    YI++ N+Y+ SG+
Sbjct: 478 LIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGK 537

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
            KE A  ++ +K  G+      +WIE++KQ ++F+  DK H Q   I+  +  ++  +  
Sbjct: 538 LKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISR 597

Query: 637 EGYVPNKRFIL 647
            GYV   + +L
Sbjct: 598 HGYVEENKALL 608



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 205/438 (46%), Gaps = 37/438 (8%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N +L  ++KC  M +A KLFD+MP +D  SW TM+ GF+ +G F   FG F    E  
Sbjct: 154 VMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWE-E 212

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F      +FT ++ A     L  V + IH      G  ++  V  ALI  Y KCGS    
Sbjct: 213 FNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDA 272

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF +M  +  + W ++I+    +   EE L  + +M       +  T    +  C+ L
Sbjct: 273 HCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARL 332

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L   +Q H  L +    +D+   +AL+D YSK G +EDAW +F      + +S   ++
Sbjct: 333 ASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALI 392

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSD 388
            G+  +G  EEA+++F +M++ G  + PN V+  L V    +  GL ++   +   +  D
Sbjct: 393 AGYGNHGQGEEAVEMFEQMLREG--MIPNHVT-FLAVLSACSYSGLSERGWEIFYSMSRD 449

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFARHGNGFKAL 444
               P   +   ++ +  + G L+++ ++  R AP    +  W +++ A   H N    L
Sbjct: 450 HKVKPRAMHYACMVELLGREGLLDEAYELI-RSAPFKPTTNMWATLLTACRMHEN----L 504

Query: 445 ELYE--EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           EL +     L G+EP  +        C+++ L+N           ++  S + +  A V+
Sbjct: 505 ELGKLAAENLYGMEPEKL--------CNYIVLLN-----------LYNSSGKLKEAAGVL 545

Query: 503 DMVGRAGL-LIEARSFIE 519
             + R GL ++ A ++IE
Sbjct: 546 QTLKRKGLRMLPACTWIE 563



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 11/219 (5%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           ++  SA  G   +G  +H+  +K            V + T +  +L+  Y KC  + +A 
Sbjct: 224 MIRASAGLGLVQVGRQIHSCALKR----------GVGDDTFVSCALIDMYSKCGSIEDAH 273

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +FD MP + TV WN++++ +  +G  +    F+    + G  ++D  + +I++  C R 
Sbjct: 274 CVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSG-AKIDHFTISIVIRICARL 332

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                +K  H  +   GY+ ++    AL+  Y K G       VF  MR +NVI+W A+I
Sbjct: 333 ASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALI 392

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +G   +   EE +++F +M    + PN +T+L+ + ACS
Sbjct: 393 AGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACS 431


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 294/545 (53%), Gaps = 31/545 (5%)

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           +T SWN  + GFL +         +KR L+    + D  ++ ++  AC R  L  +   I
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
              V   G++ ++ V NA+I     CG     RK+F +  VR++++W ++I+G V+    
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E L  + +M +  I P+ +T +  V +C+ L+ L  GR+ H  + +  L+  + + +AL
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 249

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG--------FEE---------- 340
           MDMY KCG++E A ++F+       VS T ++VG+AQ+G        F+E          
Sbjct: 250 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWN 309

Query: 341 -------------EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
                        EA+ LF +M    I  D   + + L       +L +G  IH  I K 
Sbjct: 310 AMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKH 369

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           + + N  +   LI+MY+KCG +  +I+VF  +  RNS++W ++I+  A HGN   A+  +
Sbjct: 370 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYF 429

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM    V P +VTFL LL AC H GLV +G ++   M+    +SP+ +HY+C+VD++GR
Sbjct: 430 SEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGR 489

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL EA   I+ MP++ D +VW AL  AC IHG+  MG+ AA KL    P     Y+L+
Sbjct: 490 AGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLL 549

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           AN+Y  +  WKE  KA K M++ GV+K  G S IE+   V+ F+V DK HPQ++ I+  L
Sbjct: 550 ANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECL 609

Query: 628 AELLR 632
            +L R
Sbjct: 610 IQLTR 614



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 189/384 (49%), Gaps = 42/384 (10%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++   + C  +  A K+FD   +RD VSWN+M++G++R G       F+ R +++   
Sbjct: 146 NAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFY-REMKVEGI 204

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ +   ++S+C + E   + +  HC +   G +  V + NAL+  Y KCG+  S RK
Sbjct: 205 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 264

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYE-------------------------------EG 241
           +F  M  + +++WT ++ G  Q+ L +                               E 
Sbjct: 265 LFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEA 324

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L LF +M    INP+ +T +S + ACS L AL  G  IH  + K  L  ++ + +AL+DM
Sbjct: 325 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM 384

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+KCG +  A Q+F+     + ++ T I+ G A +G    A+  F +M+   +   P+ V
Sbjct: 385 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM--PDEV 442

Query: 362 SAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVF 416
           +  LG+       GL   G++  S  + S F  +P + +   ++++  + G LE++ ++ 
Sbjct: 443 T-FLGLLSACCHGGLVEEGRKYFSQ-MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 500

Query: 417 SRMA-PRNSVSWNSMIAAFARHGN 439
             M    ++V W ++  A   HGN
Sbjct: 501 KSMPIEADAVVWGALFFACRIHGN 524



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 3/235 (1%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           ++ N T++ W +++  Y +   +  A KLFD+MP +D V WN M+ G++           
Sbjct: 268 SMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALAL 327

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F     +     D+ +    LSAC +     V   IH  +        V +G ALI  Y 
Sbjct: 328 FNEMQAMNI-NPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYA 386

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCG  +   +VF E+  RN +TWTA+ISGL  +      +  F +M    + P+ +T+L 
Sbjct: 387 KCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLG 446

Query: 263 SVMACSGLQALCEGRQIHGIL-WKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            + AC     + EGR+    +  K  L   L   S ++D+  + G +E+A ++ +
Sbjct: 447 LLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIK 501



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 36/206 (17%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINM--YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           KQI S ++ +    + F ++ LI     S+  DL+    +       N+ SWN  I  F 
Sbjct: 23  KQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFL 82

Query: 436 RHGNGFKALELYEE-MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK----------- 483
              N  +A+ LY+  ++ +G +P + T+  L  AC+ + L+  G E L            
Sbjct: 83  DSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDI 142

Query: 484 --SMTEVHRI--------SPRAEHYACVVDMVG---------RAGLLIEARSFIERMPV- 523
             S   +H +        + +    +CV D+V          R G   EA +F   M V 
Sbjct: 143 FVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVE 202

Query: 524 --KPDVLVWQALLGACSIHGDSEMGK 547
             KPD +    ++ +C+   D ++G+
Sbjct: 203 GIKPDEVTMIGVVSSCAQLEDLDLGR 228


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 313/568 (55%), Gaps = 17/568 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +L S Y +   +  A ++FD    RD VSWN M+  + ++G        F R L  
Sbjct: 261 VVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   +  +  T++ ++   S L    +MIH      G + ++ +GNAL+  Y +CGS   
Sbjct: 321 G---IPPSKVTLVNASTGCSSLRF-GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEE 376

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F E    N ++W  +I+G  Q    +  L+LF +M L  + P   TYL+ + A + 
Sbjct: 377 ARHLF-EGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVAS 435

Query: 270 ----LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---FAEELD 322
                +A+ EGR++H  +      S+  I +A++ MY+ CG++++A   F+     +  D
Sbjct: 436 NPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHD 495

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            VS   I+   +Q+G  + A+  F +M   G+   PN ++  AVL       +L  G  +
Sbjct: 496 VVSWNAIISSLSQHGHGKRALGFFRRMDLHGVA--PNQITCVAVLDACAGAAALTEGVIV 553

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
           H  +  S   SN FV   L +MY +CG LE + ++F ++A  R+ V +N+MIAA++++G 
Sbjct: 554 HDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGL 613

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +AL+L+  M+ EG  P + +F+S+L ACSH GL ++G E  +SM + + I+P  +HYA
Sbjct: 614 AGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYA 673

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C VD++GRAG L +A   I  M VKP VLVW+ LLGAC  + D + G+ A   +    P 
Sbjct: 674 CAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPG 733

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
             + Y++++NI + +G+W E A+    M+  G+ K+ G SWIEI+ +VH FV  D+ HP+
Sbjct: 734 DESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPR 793

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           ++ I+  L  L   + + GYVP+ R +L
Sbjct: 794 SEEIYRELERLHAEIREIGYVPDTRLVL 821



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 141/461 (30%), Positives = 242/461 (52%), Gaps = 28/461 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL  YLKC+ + +  ++F  + +RD  SW T+++ +  +G+       F R  + G  
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGV- 124

Query: 153 QLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           + D  +F  +L AC R  +LS   + IH  +   G E +  + N L+  Y  CG  +S  
Sbjct: 125 RCDAVTFLAVLKACARLGDLSQ-GRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAM 183

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            +F  M  R++++W A I+   Q+   +  L+LF +M L  + P  +T + ++  C+ ++
Sbjct: 184 LLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIR 242

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
              + R IH I+ +  L+  L + +AL   Y++ G ++ A ++F+ A E D VS   +L 
Sbjct: 243 ---QARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLG 299

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +AQ+G   EA  LF +M+  G  I P+ V+ V    G  +SL  G+ IH+  ++     
Sbjct: 300 AYAQHGHMSEAALLFARMLHEG--IPPSKVTLVNASTGC-SSLRFGRMIHACALEKGLDR 356

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  + N L++MY++CG  E++  +F  + P N+VSWN+MIA  ++ G   +ALEL++ M+
Sbjct: 357 DIVLGNALLDMYTRCGSPEEARHLFEGI-PGNAVSWNTMIAGSSQKGQMKRALELFQRMQ 415

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEHYA-------CVV 502
           LEG+ P   T+L+LL A      V    E  ++M E  ++  R  +  YA        VV
Sbjct: 416 LEGMAPVRATYLNLLEA------VASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVV 469

Query: 503 DMVGRAGLLIEARSFIER--MPVKPDVLVWQALLGACSIHG 541
            M    G + EA +  +R  M  + DV+ W A++ + S HG
Sbjct: 470 KMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHG 510



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 187/393 (47%), Gaps = 28/393 (7%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           A    +L A     L    + IH  +   G EEE+  GN L+  Y KC S     +VF  
Sbjct: 30  AHLVRLLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSR 87

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           + VR+  +WT +I+   ++   +  + +F +M    +  +++T+L+ + AC+ L  L +G
Sbjct: 88  LEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG 147

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           R IH  + +  L+    + + L+ +Y  CG V  A  +FE  E  D VS    +   AQ+
Sbjct: 148 RSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERMER-DLVSWNAAIAANAQS 206

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  + A++LF +M   G+   P  ++ V+    V   +   + IHS++ +S       V+
Sbjct: 207 GDLDMALELFQRMQLEGVR--PARITLVI-TLSVCAKIRQARAIHSIVRESGLEQTLVVS 263

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             L + Y++ G L+ + +VF R A R+ VSWN+M+ A+A+HG+  +A  L+  M  EG+ 
Sbjct: 264 TALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIP 323

Query: 457 PTDVTFLSLLHACS--------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           P+ VT ++    CS        H   + KG++    +               ++DM  R 
Sbjct: 324 PSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNA------------LLDMYTRC 371

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           G   EAR   E +P   + + W  ++   S  G
Sbjct: 372 GSPEEARHLFEGIP--GNAVSWNTMIAGSSQKG 402


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 306/558 (54%), Gaps = 3/558 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +S++SF +K  ++  A ++FD MP +D V WN+++ G+++ G FD+ F  F      G
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +    + T ++ AC       + K +H  V   G   ++ V  + +  Y K G   S 
Sbjct: 227 I-KPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESA 285

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF +M  RN+++W A+ISG V+N L  E   LF ++       +  T +S +  CS  
Sbjct: 286 RWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQT 345

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  G+ +HG   + + +S+L + +A++D+YSKCGS++ A  +F   ++ + ++ T +L
Sbjct: 346 ASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VG AQNG  E+A++LF +M + GI  +     +++       SL  G+ IH  + +  F 
Sbjct: 405 VGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFA 464

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEE 449
            +      L++MY+KCG +  + ++FS  +  ++ V WNSMI  +  HG+G++A+ +Y +
Sbjct: 465 FDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHK 524

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EG++P   TFLSLL ACSH  LV +G+    SM   H I P  +HYAC+VD++ RAG
Sbjct: 525 MIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAG 584

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
              EA++ IE+MP +P   V +ALL  C  H +  +G   ++KL      +P  YI+++N
Sbjct: 585 RFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSN 644

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ + RW +       M+  G+ K  G S +E    VH+F   D  HP  + I+  L  
Sbjct: 645 IYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLES 704

Query: 630 LLRLMIDEGYVPNKRFIL 647
           L   +   GYVP+   +L
Sbjct: 705 LRSAVETSGYVPDTSCVL 722



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 249/500 (49%), Gaps = 20/500 (4%)

Query: 56  KEGHFHLGPSLHASFIKTFEPFDNQNVY-NVPNATVIWNSL----------LSFYLKCDQ 104
           K+G F+  P++  +F+          ++    +A +I NSL          +  Y     
Sbjct: 20  KDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRS 79

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTII 162
           +  A  +FD       +  N M+ G+L++G +      F   RS  L   ++D  S T  
Sbjct: 80  LEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNL---EVDSCSCTFA 136

Query: 163 LSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           L AC  S +  +  ++I   V   G E+   VG+++I+   K G     ++VF  M  ++
Sbjct: 137 LKACASSLDYEMGMEIISSAVEK-GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKD 195

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+ W ++I G VQ   ++   +LF +MH   I P+ +T  S + AC G+  L  G+ +HG
Sbjct: 196 VVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHG 255

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +  L L +D+ + ++ +DMYSK G +E A  +F      + VS   ++ G  +NG   E
Sbjct: 256 YVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGE 315

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           +  LF ++V++    D   + ++L       SL  GK +H   I+S F SN  ++  +++
Sbjct: 316 SFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVD 374

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           +YSKCG L+ +  VF+RM  RN ++W +M+   A++G+   AL L+ +M+ EG+    VT
Sbjct: 375 LYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVT 434

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SL+H+C+H+G + +G      +  +   +    +   +VDM  + G +  A       
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLFRLG-FAFDIVNMTALVDMYAKCGKINLAERIFSHG 493

Query: 522 PVKPDVLVWQALLGACSIHG 541
            +  DV++W +++    +HG
Sbjct: 494 SISKDVVLWNSMITGYGMHG 513


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 293/558 (52%), Gaps = 20/558 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + + L+  Y  C  + +A  +F+ +  +D V W  MVS +  N   +  F   +      
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQ------ 252

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                         +C    +S   + IH        + E  VG AL+  Y KCG     
Sbjct: 253 --------------SCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDA 298

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R  F  +   +VI  + +IS   Q+   E+  +LF+++    + PN  +  S + AC+ +
Sbjct: 299 RLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNM 358

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+QIH    K+  +SDL + +ALMD Y+KC  ++ + +IF    + + VS   I+
Sbjct: 359 VQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIV 418

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           VGF+Q+G  EEA+ +F +M  A +       S+VL       S+    QIH  I KS F 
Sbjct: 419 VGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN 478

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  + N LI+ Y+KCG + D++KVF  +  R+ +SWN++I+ +A HG    ALEL++ M
Sbjct: 479 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRM 538

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
               VE  D+TF++LL  C   GLVN G+    SM   H I P  EHY C+V ++GRAG 
Sbjct: 539 NKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGR 598

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A  FI  +P  P  +VW+ALL +C IH +  +G+++AEK+   +P     Y+L++N+
Sbjct: 599 LNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNM 658

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G   + A   K M+ +GV K  G+SW+EI+ ++H+F V    HP    I+ +L  L
Sbjct: 659 YAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWL 718

Query: 631 LRLMIDEGYVPNKRFILH 648
                 EGY+P+   +LH
Sbjct: 719 NLKTSREGYIPDINVVLH 736



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 230/457 (50%), Gaps = 34/457 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y K   + +A +LFD MP R+ VS+ T+V    + G+F+     F+R L    +
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR-LRWEGH 158

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++Q   T +L      + + ++  +H   +  G++    VG+ LI +Y  C   S    
Sbjct: 159 EVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEH 218

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  ++ + WTA++S   +N   E   +                      +CS L  
Sbjct: 219 VFNGIVRKDAVVWTAMVSCYSENDCPENAFR-------------------CAQSCSLLAI 259

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
            C  + IHG   K    ++  +  AL+DMY+KCG ++DA   FE     D + ++ ++  
Sbjct: 260 SCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISR 319

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +AQ+   E+A +LF++++++ +  +   +S+VL        L  GKQIH+  IK    S+
Sbjct: 320 YAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESD 379

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV N L++ Y+KC D++ S+K+FS +   N VSWN+++  F++ G G +AL ++ EM+ 
Sbjct: 380 LFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQA 439

Query: 453 EGVEPTDVTFLSLLHACS------HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             +  T VT+ S+L AC+      H G ++  +E  KS      +   +     ++D   
Sbjct: 440 AQMPCTQVTYSSVLRACASTASIRHAGQIHCSIE--KSTFNNDTVIGNS-----LIDTYA 492

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           + G + +A    + + ++ D++ W A++   ++HG +
Sbjct: 493 KCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQA 528



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 138/304 (45%), Gaps = 30/304 (9%)

Query: 276 GRQIHGILWKLAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           GR +HG + +     + DL   + L++MY K G +  A ++F+   E + VS   ++   
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           AQ G  E A  LF ++   G E++  +++ +L +     + GL   +HS   K     N 
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNA 197

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           FV +GLI+ YS C  + D+  VF+ +  +++V W +M++ ++ +     A    +   L 
Sbjct: 198 FVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLL 257

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            +            +C+  G+    ++ L   TE H           ++DM  + G + +
Sbjct: 258 AI------------SCARQGIHGCAIKTLND-TEPHV-------GGALLDMYAKCGDIKD 297

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANI 570
           AR   E +P   DV++   ++   S +  S   + A E LFL    S   P  Y L + +
Sbjct: 298 ARLAFEMIPYD-DVILLSFMI---SRYAQSNQNEQAFE-LFLRLMRSSVLPNEYSLSSVL 352

Query: 571 YSCS 574
            +C+
Sbjct: 353 QACT 356



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N TVI NSL+  Y KC  +R+A+K+F  +  RD +SWN ++SG+  +G+       F R 
Sbjct: 479 NDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDR- 537

Query: 147 LELGFYQLDQASFTIILSAC 166
           +     + +  +F  +LS C
Sbjct: 538 MNKSNVESNDITFVALLSVC 557


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/587 (32%), Positives = 313/587 (53%), Gaps = 34/587 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+ FY +C ++    ++FD M  R+ VSW +++ G+ + G +      F   +E+G  
Sbjct: 178 NSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGI- 236

Query: 153 QLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           + +  +   ++SAC +  +L L  ++  C+  L   E    + NAL+  Y KCG+    R
Sbjct: 237 RPNSVTMVGVISACAKLQDLQLGEQVCTCIGEL-ELEVNALMVNALVDMYMKCGAIDKAR 295

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           K+F E   +N++ +  ++S  V+  L  E L +  +M      P+ +T LS+V ACS L 
Sbjct: 296 KIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELD 355

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKC-------------------------- 305
            +  G+  HG + +  L+    + +A+++MY KC                          
Sbjct: 356 DVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIA 415

Query: 306 -----GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
                G +E AW+IF    + D VS   ++    Q    +EA++LF  M   GI  D   
Sbjct: 416 GFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVT 475

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           +  V    G   +L L K IH  I K D   +  +   L++M+++CGD + +++VF++M 
Sbjct: 476 MVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMV 535

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+  +W + I A A  GNG  A+EL++EM  +G++P  V F++LL A SH GLV +G  
Sbjct: 536 KRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWH 595

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
             +SM +++ I+P+A HY C+VD++GRAGLL EA S I  M ++P+ ++W +LL AC +H
Sbjct: 596 IFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655

Query: 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            + ++  YAAE++    P+    ++L++NIY+ +GRW + AK    +KE G  K  G S 
Sbjct: 656 KNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSS 715

Query: 601 IEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           IEI  ++  F   D+ HP+   I  +L E+   + D GYVP+   +L
Sbjct: 716 IEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVL 762



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 231/471 (49%), Gaps = 38/471 (8%)

Query: 106 RNAVKLF--DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           + A++LF  D+  M     +++++ GF   G        F++ + +G    D  +F  +L
Sbjct: 88  QKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVP-DNFTFPFVL 146

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           SAC +S        +H  +   G+E ++ V N+LI  Y +CG     R+VF +M  RNV+
Sbjct: 147 SACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVV 206

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +WT++I G  +   Y+E + LF +M    I PNS+T +  + AC+ LQ L  G Q+   +
Sbjct: 207 SWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCI 266

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            +L L+ +  + +AL+DMY KCG+++ A +IF+   + + V    I+  + + G   E +
Sbjct: 267 GELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVL 326

Query: 344 QLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
            +  +M+K G   D   M+SAV     +D  +  GK  H  ++++       V N +INM
Sbjct: 327 AVLGEMLKHGPRPDRITMLSAVSACSELD-DVSCGKWCHGYVLRNGLEGWDNVCNAIINM 385

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN----------------------- 439
           Y KCG  E + +VF RM  +  VSWNS+IA F R+G+                       
Sbjct: 386 YMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI 445

Query: 440 -------GFK-ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
                   FK A+EL+  M+ EG+    VT + +  AC ++G ++   +++    +   I
Sbjct: 446 GALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDI 504

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
                    +VDM  R G    A     +M VK DV  W A +GA ++ G+
Sbjct: 505 HFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 196/405 (48%), Gaps = 18/405 (4%)

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           ++++I G     L  + + +F ++      P++ T+   + AC+   AL EG Q+HG + 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           K+  + D+ +E++L+  Y +CG ++   ++F+   E + VS T ++ G+A+ G  +EA+ 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           LF +MV+ GI  +   +  V+        L LG+Q+ + I + +   N  + N L++MY 
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYM 286

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCG ++ + K+F     +N V +N++++ + R G   + L +  EM   G  P  +T LS
Sbjct: 287 KCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLS 346

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
            + ACS +  V+ G ++       + +         +++M  + G    A    +RM  K
Sbjct: 347 AVSACSELDDVSCG-KWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNK 405

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP-APYILMANIYSCSGRWKERAKA 583
             V  W +L+     +GD E    +A K+F A PDS    +  M         +KE  + 
Sbjct: 406 TRV-SWNSLIAGFVRNGDME----SAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIEL 460

Query: 584 IKRMKEMGV--DKETGI---------SWIEIEKQVHSFVVDDKMH 617
            + M+  G+  DK T +           +++ K +H ++    +H
Sbjct: 461 FRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIH 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 128/269 (47%), Gaps = 15/269 (5%)

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG------SVEDAWQIFEFAEELDGV 324
           + + E +Q+H  + K  L        +L ++ S C       S+E A +  E   E +G+
Sbjct: 44  KTMTELKQLHSQITKNGLNHH---PLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGI 100

Query: 325 SMT-----VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             T      ++ GF+  G   +A+ +F +++  G   D      VL       +L  G Q
Sbjct: 101 MGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQ 160

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H  I+K  F  + FV N LI+ Y +CG+++   +VF +M+ RN VSW S+I  +A+ G 
Sbjct: 161 VHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGC 220

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+ L+ EM   G+ P  VT + ++ AC+ +  +  G +    + E+  +   A    
Sbjct: 221 YKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGEL-ELEVNALMVN 279

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVL 528
            +VDM  + G + +AR   +    K  VL
Sbjct: 280 ALVDMYMKCGAIDKARKIFDECVDKNLVL 308



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 138/333 (41%), Gaps = 49/333 (14%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WNSL++ +++   M +A K+F  MP  D VSWNTM+   ++   F      F R ++ 
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF-RVMQS 466

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D+ +   + SAC       ++K IH  +       ++ +G AL+  + +CG   S
Sbjct: 467 EGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQS 526

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF +M  R+V  WTA I  +         ++LF +M    I P+ + +++ + A S 
Sbjct: 527 AMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALS- 585

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                     HG                        G VE  W IF   +++ G++   +
Sbjct: 586 ----------HG------------------------GLVEQGWHIFRSMKDIYGIAPQAV 611

Query: 330 LVG-----FAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHS 382
             G       + G   EA+ L   M     +++PN V   ++L    V  ++ +      
Sbjct: 612 HYGCMVDLLGRAGLLSEALSLINSM-----QMEPNDVIWGSLLAACRVHKNVDIAAYAAE 666

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            I + D      ++  L N+Y+  G  +D  KV
Sbjct: 667 RISELD-PERTGIHVLLSNIYASAGRWDDVAKV 698


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 319/601 (53%), Gaps = 58/601 (9%)

Query: 72  KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV--------------------KL 111
           + F+  + +NVY       +WN ++S Y K    + ++                    +L
Sbjct: 155 RVFDTMEKKNVY-------LWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASEL 207

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +  RD +SWN+M+SG++ NG  + G G +K+ + LG   +D A+   +L  C  S  
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI-DVDLATIISVLVGCANSGT 266

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
             + K +H L     +E  +   N L+  Y KCG      +VF +M  RNV++WT++I+G
Sbjct: 267 LSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAG 326

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             ++   +  + L  +M    +  + +   S + AC+   +L  G+ +H  +    + S+
Sbjct: 327 YTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASN 386

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + +ALMDMY+KCGS+E A  +F      D +S   ++                     
Sbjct: 387 LFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------------------- 425

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
             ++ D   ++ +L      ++L  GK+IH  I+++ ++S+  V N L+++Y KCG L  
Sbjct: 426 GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGL 485

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  +  ++ VSW  MIA +  HG G +A+  + EM+  G+EP +V+F+S+L+ACSH
Sbjct: 486 ARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSH 545

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            GL+ +G  F   M     I P+ EHYAC+VD++ R G L +A  FIE +P+ PD  +W 
Sbjct: 546 SGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWG 605

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-- 589
           ALL  C I+ D E+ +  AE++F  +P++   Y+L+ANIY+ +    E+ + +KRM+E  
Sbjct: 606 ALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEA----EKREEVKRMREKI 661

Query: 590 --MGVDKETGISWIEIEKQVHSFVV-DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
              G+ K  G SWIEI+ +V+ FV  ++  HP +  I  +L ++ R M +EGY P  ++ 
Sbjct: 662 GKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYA 721

Query: 647 L 647
           L
Sbjct: 722 L 722



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 198/441 (44%), Gaps = 76/441 (17%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +L+  ++  +L  C   +     K +H ++       +  +G  L++ Y  CG    GR+
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 213 VFGEMRVRN--------------------------------------------------- 221
           VF  M  +N                                                   
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           VI+W ++ISG V N L E GL ++ +M    I+ +  T +S ++ C+    L  G+ +H 
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K + +  +   + L+DMYSKCG ++ A ++FE   E + VS T ++ G+ ++G+ + 
Sbjct: 276 LAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDG 335

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ L  +M K G+++D   ++++L       SL  GK +H  I  ++  SN FV N L++
Sbjct: 336 AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMD 395

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG +E +  VFS M  ++ +SWN+M+                       ++P   T
Sbjct: 396 MYAKCGSMEGANSVFSTMVVKDIISWNTMVGE---------------------LKPDSRT 434

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIER 520
              +L AC+ +  + +G E    +      S R  H A  +VD+  + G+L  AR   + 
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDR--HVANALVDLYVKCGVLGLARLLFDM 492

Query: 521 MPVKPDVLVWQALLGACSIHG 541
           +P K D++ W  ++    +HG
Sbjct: 493 IPSK-DLVSWTVMIAGYGMHG 512



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++ F Q G  E AM+L     K+  E++     +VL +     SL  GK++HS+I  +  
Sbjct: 73  ILHFCQLGDLENAMELVCMCQKS--ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSV 130

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  +   L++ Y+ CGDL++  +VF  M  +N   WN M++ +A+ G+  +++ L++ 
Sbjct: 131 GVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKI 190

Query: 450 MKLEGVE 456
           M  +G+E
Sbjct: 191 MVEKGIE 197


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/566 (32%), Positives = 294/566 (51%), Gaps = 13/566 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           ++ ++L+S Y +C  +R+A  LF  +    D V WN M++   +NG        F R L+
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 149 LGFYQLDQASFTIILSACDRSELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           LG    D  +F  +  AC  S     S  K  H  +   G   +V V  AL+ +Y +CG 
Sbjct: 224 LGIPP-DLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGE 282

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
               RK F EM  RN ++WT++I+   Q   L    ++ F  M L  + P   T  +++ 
Sbjct: 283 IDCARKFFAEMPERNAVSWTSMIAAFTQIGHLL--AVETFHAMLLEGVVPTRSTLFAALE 340

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--LDG 323
            C  L+     R +  I  ++ + +D+ I + L+  Y++C   EDA ++F   EE   D 
Sbjct: 341 GCEDLRV---ARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDA 397

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
             +T ++  +AQ        +L+   ++ GI  D  +    L       +L  G+QIH+ 
Sbjct: 398 ALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHAC 457

Query: 384 IIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
           +        +  + N +++MY +CG L D+   F  M  R+ +SWN+M++A A+HG    
Sbjct: 458 VAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVED 517

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
             +L+  M  EG +   + FL+LL AC+H GLV  G E   +MT  H + P  EHY C+V
Sbjct: 518 CCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMV 577

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++GR G L +A   ++ MPV PD   W AL+GAC I+GD+E G++AAE++   + D  A
Sbjct: 578 DLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTA 637

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ + NIYS +GRW + A   K M ++G+ K  G+S IEI  +VH FVV D+ HPQ++ 
Sbjct: 638 AYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEA 697

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  L  ++  +   GY      +LH
Sbjct: 698 IYAELERVMGAIERAGYRAVTGEVLH 723



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 223/461 (48%), Gaps = 19/461 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  YL+C  + +A+ +F  +  +  V W  ++S ++  G        F R L+ G  
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGI- 124

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            LD   F  +LSAC   E     ++IH      G   +  V +AL++ Y +CGS      
Sbjct: 125 ALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 213 VFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGL 270
           +FG + R  +V+ W A+I+   QN    E L++F +M  LG I P+ +T++S   ACS  
Sbjct: 185 LFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLG-IPPDLVTFVSVFKACSSS 243

Query: 271 QAL--CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            +L   + +  H  L +  L SD+ + +AL++ Y++CG ++ A + F    E + VS T 
Sbjct: 244 PSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTS 303

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  F Q G    A++ F  M+  G+   P   +    + G +  L + + + ++  +  
Sbjct: 304 MIAAFTQIG-HLLAVETFHAMLLEGVV--PTRSTLFAALEGCE-DLRVARLVEAIAQEIG 359

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN-----SMIAAFARHGNGFKA 443
             ++  +   L+  Y++C   ED+I+VFS    R    W+     +MIA +A+  +    
Sbjct: 360 VVTDVAIVTDLVMAYARCDGQEDAIRVFS---AREEGEWDAALVTAMIAVYAQCRDRRST 416

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
            +L+      G+ P  + +++ L AC+ +  +++G +    +    R+         +V 
Sbjct: 417 FKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVS 476

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M G+ G L +AR   + MP + D + W A+L A + HG  E
Sbjct: 477 MYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 151/282 (53%), Gaps = 8/282 (2%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           + ++L+  Y +CGS  S   VF ++  ++++ WT +IS  V        + LF ++    
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           I  +++ ++S + ACS  + L  GR IH    +  L     + SAL+ MY +CGS+ DA 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 313 QIFEFAEE-LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            +F   E  LD V    ++   +QNG   EA+++F +M++ GI   P++V+ V       
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIP--PDLVTFVSVFKACS 241

Query: 372 TSLGLG----KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
           +S  L     K  H+ + ++   S+  V   L+N Y++CG+++ + K F+ M  RN+VSW
Sbjct: 242 SSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSW 301

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            SMIAAF + G+   A+E +  M LEGV PT  T  + L  C
Sbjct: 302 TSMIAAFTQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 3/245 (1%)

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + S+L+ MY +CGS+E A  +F        V  TV++  +   G    A+ LF ++++ G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           I +D  +  +VL     +  L  G+ IH   +++       V + L++MY +CG L D+ 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 414 KVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +F  +    + V WN+MI A +++G+  +ALE++  M   G+ P  VTF+S+  ACS  
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 473 -GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             L    ++   +  +   +         +V+   R G +  AR F   MP + + + W 
Sbjct: 244 PSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPER-NAVSWT 302

Query: 532 ALLGA 536
           +++ A
Sbjct: 303 SMIAA 307


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 308/568 (54%), Gaps = 9/568 (1%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           +HAS IKT    D Q        +   ++L +  L  D  R A+ L   +   +   +N 
Sbjct: 41  IHASIIKTMPSPDAQ-----LTISTRLSALCAQSLPIDP-RYALSLLAQLRTPNLPLYNA 94

Query: 126 MVSGF-LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           ++ G    N +   G   +K+ L  G    D  +   +L AC  S      + +H     
Sbjct: 95  IIRGLATSNNDSIEGLVVYKQMLSKGIVP-DNYTIPFVLKACAESRAVREGEEVHGQAIK 153

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G   +V V N L+  Y  C    S RKVF     R++++WT +I G V+     EG+ L
Sbjct: 154 MGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGL 213

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALMDMYS 303
           F +M    +  + +T +  + +C+ L  L  GR++H  I+    +  D+ + +AL+DMY 
Sbjct: 214 FFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYL 273

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KCG    A ++F+     + VS   ++ G AQ G  +E++ +F KM + G++ D   + A
Sbjct: 274 KCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVA 333

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           VL        L LGK +H+ + ++   ++ F+ N L++MY+KCG ++ +  VF  M  ++
Sbjct: 334 VLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKD 393

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
             S+ +MI   A HG G KAL+L+ EM   G+EP +VTF+ +L ACSHVGLV +G ++ +
Sbjct: 394 VYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFE 453

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            M+ ++ + P+ EHY C+VD++GRAGL+ EA  FI  MP++PD  V  ALLGAC IHG  
Sbjct: 454 DMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKV 513

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
           E+G+   +K+   +P     Y+LM+NIYS + RW++  K  K MKE  ++K  G S IE+
Sbjct: 514 ELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIEL 573

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELL 631
           +  +H F   DK HP+   I+ +L E++
Sbjct: 574 DGVIHEFQKGDKSHPKIKEIYKLLDEIM 601



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 157/339 (46%), Gaps = 23/339 (6%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD--LCIESALMDMYSKCGSVEDA 311
           NP+ L++LS++  C  ++ L   +QIH  + K     D  L I + L  + ++   ++  
Sbjct: 19  NPHKLSFLSTLQTCKSIKGL---KQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPR 75

Query: 312 WQIFEFAEELDGVSM---TVILVGFA-QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           + +   A +L   ++     I+ G A  N    E + ++ +M+  GI  D   +  VL  
Sbjct: 76  YALSLLA-QLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKA 134

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                ++  G+++H   IK    S+ +V+N L+ MY+ C  +  + KVF     R+ VSW
Sbjct: 135 CAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSW 194

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +MI  + + G   + + L+ EM  E ++   +T + +L +C+ +G +  G +  + +  
Sbjct: 195 TTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIR 254

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
              ++        +VDM  + G    AR   + MPVK +V+ W +++   +  G  +   
Sbjct: 255 NSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-NVVSWNSMISGLAQKGQFKESL 313

Query: 548 YAAEKL--FLAQPDSPAPYILMANIYSCS-------GRW 577
           Y   K+     +PD      L+A + SC+       G+W
Sbjct: 314 YMFRKMQRLGVKPDD---VTLVAVLNSCANLGVLELGKW 349


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/570 (34%), Positives = 320/570 (56%), Gaps = 32/570 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +++ Y KC  +  A ++FD+MP ++ VSW  +VSG+ ++G  +  F  F+  L   ++
Sbjct: 104 NHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLI--WH 161

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK-CGSSSSGR 211
           Q  + +F  ++SAC   +     + +H L     ++  V VGNALI  Y K CG +    
Sbjct: 162 QPTEFAFASVISACGGDDN--CGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAW 219

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC---- 267
            V+  M  RN+++W ++I+G          L+LF +MH+G I  +  T L S+ +C    
Sbjct: 220 NVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRAT-LVSIFSCLCGM 278

Query: 268 -SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIF-EFAEELDGV 324
             GL+      Q+  +  K      + + +AL+  YS  G  V D ++IF E     D V
Sbjct: 279 GDGLECC---FQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVV 335

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T I+  FA+    ++A+ +F + ++  +  D +M S VL         GL  + H+L 
Sbjct: 336 SWTGIIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVL-----KACAGLATERHALT 389

Query: 385 IKSD-----FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           ++S      F  +  + N LI+  ++CG +  S +VF +M  R++VSWNSM+ A+A HG 
Sbjct: 390 VQSHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQ 449

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G +AL L+ +M     +P   TF++LL ACSH G+  +G +  ++M+  H I P+ +HYA
Sbjct: 450 GKEALLLFSQMD---AQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYA 506

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++GRAG + EA+  I++MP++PD +VW ALLG+C  HG++++ K AA KL    P+
Sbjct: 507 CMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPN 566

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKR-MKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
           +   Y+LM+NI+   GR+ E A+ I+R M+   V KE G+SWIE+  QVH F    + HP
Sbjct: 567 NSLGYVLMSNIFCTDGRFNE-ARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHP 625

Query: 619 QADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + + I   L EL+R + D GYVP     LH
Sbjct: 626 EKEAICARLEELVRRLKDLGYVPQISLALH 655



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 239 EEGLKLFVKMHLGLINPNSL-----TYLSSVMACSGLQALCEGRQIHGILWKLALQSD-- 291
           +E LKLF      +  P  L     TY +   AC+   +L EG+ +H  ++     SD  
Sbjct: 44  QEALKLFYS----ITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNSDFN 99

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L + + +++MY+KCGS++ A Q+F+   E + VS T ++ G+AQ+G   E  ++F  M+ 
Sbjct: 100 LFLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLI 159

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-CGDLE 410
                +    S +    G D     G+Q+H+L +K+ F S  +V N LI MY K CG  +
Sbjct: 160 WHQPTEFAFASVISACGGDDNC---GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGAD 216

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           ++  V+  M  RN VSWNSMIA F   G G +ALEL+ +M + G+     T +S+ 
Sbjct: 217 EAWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIF 272



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 19/185 (10%)

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMV-SAVLGVFGVDTSLGLGKQIHSLII----KSDFTS 391
           G  +EA++LF  +      +  +   +A+       +SL  G+ +H  +      SDF  
Sbjct: 41  GHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFLHNPNSDF-- 98

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N F+ N ++NMY+KCG L+ + ++F  M  +N VSW ++++ +A+HG   +   ++  M 
Sbjct: 99  NLFLTNHVVNMYAKCGSLDYAHQMFDEMPEKNIVSWTALVSGYAQHGRSNECFRVFRGM- 157

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           L   +PT+  F S++ AC   G  N G        +VH ++ +    +CV   VG A ++
Sbjct: 158 LIWHQPTEFAFASVISACG--GDDNCG-------RQVHALALKTSFDSCV--YVGNALIM 206

Query: 512 IEARS 516
           +  +S
Sbjct: 207 MYCKS 211



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 83/175 (47%), Gaps = 9/175 (5%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+L+    +C  +  + ++FD M  RDTVSWN+M+  +  +G+       F +    
Sbjct: 404 VLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDA- 462

Query: 150 GFYQLDQASFTIILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              Q D A+F  +LSAC  + ++   +K+   +    G   ++     ++    + G  S
Sbjct: 463 ---QPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQIS 519

Query: 209 SGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP-NSLTYL 261
             +++  +M +  + + W+A++    ++   E  L     + L  ++P NSL Y+
Sbjct: 520 EAKELIDKMPMEPDSVVWSALLGSCRKHG--ETKLAKLAAVKLKELDPNNSLGYV 572


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/640 (30%), Positives = 323/640 (50%), Gaps = 53/640 (8%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL+  A+ G   L   L       F+   + N++         N+LLS       + 
Sbjct: 48  LNHLLTAYARSGRLPLARRL-------FDAMPDPNLFT-------RNALLSALAHARLLP 93

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGF----LRNGEFDMGFGFFKRSLELGFYQLDQASFTI- 161
           +  +LF  MP RD VS+N +++GF                 +    +   ++  +  T+ 
Sbjct: 94  DMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMS 153

Query: 162 --ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +++A    + +L  + +HC +   G+       + L+  Y K G     ++VF EM V
Sbjct: 154 GMVMAASALGDRAL-GRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVV 212

Query: 220 RNV-------------------------------ITWTAVISGLVQNQLYEEGLKLFVKM 248
           +NV                               ITWT +++GL QN L  E L +F +M
Sbjct: 213 KNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRM 272

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
               +  +  T+ S + AC  L A  EG+QIH    +     ++ + SAL+DMYSKC S+
Sbjct: 273 RAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSI 332

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
             A  +F      + +S T ++VG+ QNG  EEA+++F +M   GI+ +   + +V+   
Sbjct: 333 RLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSC 392

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
               SL  G Q H + + S       V++ L+ +Y KCG +ED+ ++F  M   + VS+ 
Sbjct: 393 ANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYT 452

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           ++++ +A+ G   + ++L+E+M L+GV+P  VTF+ +L ACS  GLV KG  +  SM + 
Sbjct: 453 ALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQD 512

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           H I    +HY C++D+  R+G L EA  FI +MP  PD + W  LL AC + GD E+GK+
Sbjct: 513 HGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKW 572

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           AAE L    P +PA Y+L+ ++++  G W E A   + M++  V KE G SWI+ + +VH
Sbjct: 573 AAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVH 632

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F  DD+ HP + TI+  L  L   M +EGY P+   +LH
Sbjct: 633 IFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLH 672


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 310/560 (55%), Gaps = 16/560 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M +A K+FD++P R+  +W T+++G+++N    +    F + LE G Y  
Sbjct: 105 LVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYP- 163

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGY--EEEVTVGNALITSYFKCGSSSSGRK 212
              +  I+L+AC   +     K +H   YL  Y  + + ++GN+L + Y K        K
Sbjct: 164 SNYTLGIVLNACSSLQSIEFGKQVH--AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIK 221

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  ++ ++VI+WT+VIS    N      L  F+ M    + PN  T  S + AC  +  
Sbjct: 222 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLT 281

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G QIH +  KL   S + I++++M +Y KCG + +A ++FE  E L+ V+   ++ G
Sbjct: 282 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 341

Query: 333 FAQ-----------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            A+           +     A+ +F K+ ++G++ D    S+VL V     +L  G+QIH
Sbjct: 342 HAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIH 401

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             IIKS   ++  V   L++MY+KCG ++ + K F  M  R  +SW SMI  FARHG   
Sbjct: 402 GQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQ 461

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL+L+E+M+L G++P  VTF+ +L ACSH GL ++ + + + M + + I P  +H+AC+
Sbjct: 462 QALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACL 521

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           +DM  R G + EA   + +M  +P+  +W  L+  C  HG S++G YAAE+L   +P   
Sbjct: 522 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDV 581

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+ + N++  +GRWK+ +K  K MKE  V K    SWI I+++V+SF  +DK H Q+ 
Sbjct: 582 ETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSL 641

Query: 622 TIHGVLAELLRLMIDEGYVP 641
            ++ +L  +L  +   GY P
Sbjct: 642 EMYKLLETVLNEVKALGYEP 661



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 207/405 (51%), Gaps = 13/405 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++ + +  +L  C    L+  ++MIH  +   G+ E++ V   L+  Y KCG   S  K
Sbjct: 61  RIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 120

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  RNV  WT +++G VQN      L+LF+KM      P++ T    + ACS LQ+
Sbjct: 121 VFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQS 180

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  L K  +  D  I ++L   YSK   +E A + F+  +E D +S T ++  
Sbjct: 181 IEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISS 240

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
              NG    ++  F+ M+  G++ +   +++VL    V  +L LG QIHSL IK  + S+
Sbjct: 241 CCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSS 300

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR-----------HGNGF 441
             + N ++ +Y KCG L ++ K+F  M   N V+WN+MIA  A+           H +G 
Sbjct: 301 ILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGS 360

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL +++++   G++P   TF S+L  CS++  + +G +    + +   ++      A +
Sbjct: 361 TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTA-L 419

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           V M  + G + +A      MP +  ++ W +++   + HG S+  
Sbjct: 420 VSMYNKCGSIDKASKAFLEMPSRT-MISWTSMITGFARHGLSQQA 463



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 211/423 (49%), Gaps = 33/423 (7%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
            G  +HA  IK    FD          T I NSL SFY K  ++  A+K F  +  +D +
Sbjct: 183 FGKQVHAYLIKYHIDFD----------TSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVI 232

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW +++S    NG+      FF   L  G  + ++ + T +LSAC       +   IH L
Sbjct: 233 SWTSVISSCCDNGQAARSLSFFMDMLSDGM-KPNEYTLTSVLSACCVMLTLDLGAQIHSL 291

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG---------- 231
               GY   + + N+++  Y KCG     +K+F  M   N++TW A+I+G          
Sbjct: 292 SIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAED 351

Query: 232 -LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
            +  ++     L +F K++   + P+  T+ S +  CS L AL +G QIHG + K  + +
Sbjct: 352 DVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLA 411

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D+ + +AL+ MY+KCGS++ A + F        +S T ++ GFA++G  ++A+QLF  M 
Sbjct: 412 DVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMR 471

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKC 406
             GI+  PN V+ V GV    +  GL  +   +  +++  +   P +++   LI+MY + 
Sbjct: 472 LVGIK--PNQVTFV-GVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRL 528

Query: 407 GDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLS 464
           G +E++  V  +M    N   W+ +IA    HG     L  Y   +L  ++P DV T++S
Sbjct: 529 GRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKS--DLGFYAAEQLLKLKPKDVETYVS 586

Query: 465 LLH 467
           LL+
Sbjct: 587 LLN 589


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/524 (34%), Positives = 292/524 (55%), Gaps = 33/524 (6%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           S+   L  C + +  L +K IH  +   G  +   + N L+ +Y KC        +F EM
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEG 276
             R+ ++W ++++   Q +L  + L +F  M     + P+   Y + + AC+ L +L  G
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+H          D  ++S+L+DMY+KCG    A  +F+       VS T +L G+A++
Sbjct: 124 KQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARS 183

Query: 337 GFEEEAMQL-------------------------------FVKMVKAGIEI-DPNMVSAV 364
           G ++EAM+L                               F++M + G++I DP ++S+V
Sbjct: 184 GLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSV 243

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           +G       LGLGKQIH L+I S + S  F++N L++MY+KC D+  +  VF+RM  R+ 
Sbjct: 244 VGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDV 303

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           VSW S+I   A+HG   +AL+LY++M L  ++P +VTF+ L++ACSH GLV+KG +  K+
Sbjct: 304 VSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKA 363

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           M E +RISP  + + C +D++ R+G L EA   I+ MP KPD   W ALL AC  HG++E
Sbjct: 364 MIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTE 423

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           MG   A++L       P+ Y+L++N+Y+ +G+W++ ++  K M +M V ++ G S I++ 
Sbjct: 424 MGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLG 483

Query: 605 KQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K+   F   +  HP  D I G+L EL   M   GY+P+  ++LH
Sbjct: 484 KESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLH 527



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 206/417 (49%), Gaps = 47/417 (11%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y KC+ +++A  LFD+MP RD VSW ++++ + +    +     F         
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D   +  +L AC       + K +H    L  + ++  V ++L+  Y KCG  S  R 
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160

Query: 213 VF----------------GEMR---------------VRNVITWTAVISGLVQNQLYEEG 241
           VF                G  R               VRN+ +WTA+ISGLVQ+    +G
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDG 220

Query: 242 LKLFVKMH---LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
             +F++M    + +++P  L+  S V AC+ L  L  G+QIHG++     +S L I +AL
Sbjct: 221 CYMFIEMRREGVDIVDPLVLS--SVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNAL 278

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KC  +  A  +F      D VS T I+VG AQ+G  +EA+ L+ +MV A  EI P
Sbjct: 279 VDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLA--EIKP 336

Query: 359 NMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVN--NGLINMYSKCGDLEDSI 413
           N V+ V G+    +  GL   G+++   +I+ D+  +P +      +++ S+ G L ++ 
Sbjct: 337 NEVTFV-GLIYACSHAGLVSKGRKLFKAMIE-DYRISPSLQLFTCFLDLLSRSGHLNEAE 394

Query: 414 KVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEE-MKLEGVEPTDVTFLSLLHA 468
            +   M  + +  +W ++++A   HGN    + + +  + L   EP+    LS ++A
Sbjct: 395 DLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYA 451



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 28/341 (8%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN---------- 84
           +T +L  D++V  + LL   A      LG  +HA F+    PF + +V            
Sbjct: 96  TTDRLQPDHFV-YATLLKACASLCSLRLGKQVHARFV--LSPFVDDDVVKSSLVDMYAKC 152

Query: 85  -VPN------------ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL 131
            +P+             +V W ++LS Y +      A++LF   P+R+  SW  ++SG +
Sbjct: 153 GLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLV 212

Query: 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           ++G    G   F      G   +D    + ++ AC    +  + K IH LV   GYE  +
Sbjct: 213 QSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCL 272

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
            + NAL+  Y KC    + R VF  M  R+V++WT++I G  Q+   +E L L+ +M L 
Sbjct: 273 FISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLA 332

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVED 310
            I PN +T++  + ACS    + +GR++   ++    +   L + +  +D+ S+ G + +
Sbjct: 333 EIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNE 392

Query: 311 AWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           A  + +    + D  +   +L     +G  E  +++  +++
Sbjct: 393 AEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLL 433


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/568 (32%), Positives = 303/568 (53%), Gaps = 7/568 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           ++T++  SL+S Y +C  +  A  L + M  RD V+WN MV+   +NG+        +R 
Sbjct: 293 SSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRR- 351

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCG 205
           +++  +  ++ ++  +L AC   E     + IH  V LCG  + EV VGN++IT Y KCG
Sbjct: 352 MDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCG 411

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
            + +   VF  M  ++ ++W AVI+  V N  +++ L+LF  M L  +  N  T LS + 
Sbjct: 412 QTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLE 471

Query: 266 ACSGLQALCEGRQIHGILWKLALQSD-LCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           AC GL+ L   RQIH          +   + +++++MY++CGS+ DA + F+  EE   V
Sbjct: 472 ACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLV 531

Query: 325 SMTVILVGFAQ--NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
           + ++IL  +AQ  +G    A + F +M   GI+       + L       +L  G+ +H 
Sbjct: 532 AWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHR 591

Query: 383 LIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
               S F     V  N +INMY KCG   D+  VF +M  +  +SWNS+I A+A +G+  
Sbjct: 592 RAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHAL 651

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL   +EM L+G +P   T +S+L+  SH GL+ +G+E  +S  + H + P +    C+
Sbjct: 652 EALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCL 711

Query: 502 VDMVGRAGLLIEARSFIERMPV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           VD++ R G L  A   I   P  + D + W  LL AC  +GD + G   AE++F  +P  
Sbjct: 712 VDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQH 771

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
              ++++AN+Y+  GRW + ++  K M+ M V KE G SWIE+   VH F+  +  HP+ 
Sbjct: 772 SGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKI 831

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFILH 648
             I   L +L   M + GYVP+   ++H
Sbjct: 832 REICEDLEKLTLRMREAGYVPDTTNVVH 859



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 237/494 (47%), Gaps = 27/494 (5%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           L   A  G    G  +H+S + +           + +  +I NSL++ Y KC  +  A K
Sbjct: 65  LDACAASGELDHGRQIHSSVVGS----------GLTSNIIISNSLVNMYGKCQDVPCAEK 114

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           +FD M +RD VSW  M++ + +NG +        R ++    + +Q +F  I+  C +  
Sbjct: 115 VFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSR-MDAEGVKPNQVTFVTIVDVCAKLR 173

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           L  + + IH  +   G E +  +GNAL+  Y  CGS    + VF  M   +V+ WT +I+
Sbjct: 174 LLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIA 233

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G  QN  YEEGL +F KM L  +  N +TY+S V  C  L A+ EG  I   + +    S
Sbjct: 234 GCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCS 293

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
              + ++L+ +Y +CG ++ A  + E   + D V+   ++   AQNG   EA+ L  +M 
Sbjct: 294 STLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMD 353

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDL 409
             G   +     +VL       +L  G++IH+ ++          V N +I MY KCG  
Sbjct: 354 MEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQT 413

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           E ++ VF  M  ++ VSWN++I A   +     ALEL+  M+LEG+   + T LSLL AC
Sbjct: 414 EAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEAC 473

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYA-------CVVDMVGRAGLLIEARSFIERMP 522
                   G+E LK   ++H  +               VV+M  R G L++A+   + + 
Sbjct: 474 G-------GLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLE 526

Query: 523 VKPDVLVWQALLGA 536
            K  ++ W  +L A
Sbjct: 527 EK-GLVAWSIILAA 539



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 226/439 (51%), Gaps = 2/439 (0%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y KC ++ +A+ +FD +  ++  SW  M++ + +NG +      F R ++    + D+ 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTR-MQWEGTRPDKV 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
            F I L AC  S      + IH  V   G    + + N+L+  Y KC       KVF  M
Sbjct: 60  VFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            +R+V++WTA+++   QN  + + L+   +M    + PN +T+++ V  C+ L+ L  GR
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           +IH  +    L+ D  + +AL+ MY  CGS +D   +F    +   +  T ++ G +QNG
Sbjct: 180 KIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNG 239

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             EE + +F KM   G++ +     +++ V     ++  G+ I + I++S F S+  +  
Sbjct: 240 QYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLAT 299

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI++Y +CG L+ +  +   M  R+ V+WN+M+ A A++G+ ++A+ L   M +EG   
Sbjct: 300 SLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGA 359

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             VT+LS+L AC+++  +++G E    +     +         V+ M G+ G    A S 
Sbjct: 360 NKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSV 419

Query: 518 IERMPVKPDVLVWQALLGA 536
            E MP K DV  W A++ A
Sbjct: 420 FEAMPRKDDV-SWNAVINA 437



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 183/345 (53%), Gaps = 6/345 (1%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KC   +    VF  +  +NV +WT +++   QN  Y E L+LF +M      P+ + +
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           + ++ AC+    L  GRQIH  +    L S++ I ++L++MY KC  V  A ++F+    
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGK 378
            D VS T +L  +AQNG   +A++   +M   G++  PN V+   ++ V      L LG+
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVK--PNQVTFVTIVDVCAKLRLLDLGR 179

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           +IH  II      +  + N L++MY  CG  +D   VFSRM   + + W +MIA  +++G
Sbjct: 180 KIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNG 239

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
              + L ++ +M LEGV+  +VT++S++  C ++  V +G E + +              
Sbjct: 240 QYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMIDARILESPFCSSTLLA 298

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
             ++ + G+ G+L  A+  +E M  + DV+ W A++ AC+ +GD+
Sbjct: 299 TSLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGDN 342



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 2/255 (0%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KC  V DA  +F+     +  S T+++  ++QNG   EA++LF +M   G   D  +
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
               L        L  G+QIHS ++ S  TSN  ++N L+NMY KC D+  + KVF  M 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R+ VSW +M+A +A++G   +ALE    M  EGV+P  VTF++++  C+ + L++ G +
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
               +     + P       +V M G  G   + +S   RM  +  VL+W  ++  CS +
Sbjct: 181 IHHRIIN-EGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQN 238

Query: 541 GDSEMGKYAAEKLFL 555
           G  E G     K+ L
Sbjct: 239 GQYEEGLLVFRKMDL 253



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 38/78 (48%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           V  + V+ N++++ Y KC    +A  +FD MP +  +SWN+++  +  NG         +
Sbjct: 599 VETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQ 658

Query: 145 RSLELGFYQLDQASFTII 162
             L  GF      S +I+
Sbjct: 659 EMLLQGFDPDSGTSVSIL 676


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 301/559 (53%), Gaps = 48/559 (8%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F LG  +HA  ++     D            + NSL+  Y KC QM  AVK+FD +P   
Sbjct: 265 FRLGQCIHALIVRKGFGSDQH----------VGNSLIDMYTKCMQMDEAVKVFDSLPNIS 314

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           TVSWN +++GF + G +        ++LE+                     L+L+ +   
Sbjct: 315 TVSWNILITGFGQAGSY-------AKALEV---------------------LNLMEE--- 343

Query: 180 CLVYLCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
                 G E  EVT  N ++ S  K     S R +F ++   +V TW  ++SG  Q +L+
Sbjct: 344 -----SGSEPNEVTYSN-MLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELH 397

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           ++ ++LF +M    + P+  T    + +CS L  L  G Q+H    +  L +D+ + S L
Sbjct: 398 QDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGL 457

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMYSKCG +  A  IF    E D V    ++ G A +   EEA   F +M   G+    
Sbjct: 458 VDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTE 517

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           +  ++++      +S+  G+QIH+ I+K  +  N +V + LI+MY+KCG+++D+   F  
Sbjct: 518 SSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDC 577

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  +N V+WN MI  +A++G G KA++L+E M      P  VTF+++L  CSH GLV++ 
Sbjct: 578 MVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEA 637

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           + F  SM   + I+P AEHY C++D +GRAG L+E  + I+ MP K D +VW+ LL AC+
Sbjct: 638 IAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACA 697

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +H ++E+G+ AA+ LF   P +P+PY+L++NIY+  GR  + +     M   GV K  G 
Sbjct: 698 VHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGY 757

Query: 599 SWIEIEKQVHSFVVDDKMH 617
           SWI+ +  VH+F+V D + 
Sbjct: 758 SWIDHKDGVHAFMVADDLQ 776



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 122/379 (32%), Positives = 205/379 (54%), Gaps = 20/379 (5%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           NA +++  + G   + R +  EM  RNV++W  VI+ L +++   E L+L+  M    + 
Sbjct: 78  NAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLV 137

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P   T  S + AC  + AL +GR+ HG+  K+ L  +L +E+AL+ MY+KCG VEDA ++
Sbjct: 138 PTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRL 197

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV------- 367
           F+     + VS T ++ G  Q G  ++A++LF +M ++G+ +DP  VS+VLG        
Sbjct: 198 FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACAS 257

Query: 368 -FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
            F V  +  LG+ IH+LI++  F S+  V N LI+MY+KC  +++++KVF  +   ++VS
Sbjct: 258 EFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVS 317

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN +I  F + G+  KALE+   M+  G EP +VT+ ++L +C       K  + L +  
Sbjct: 318 WNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCI------KARDVLSARA 371

Query: 487 EVHRIS-PRAEHYACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGD 542
              +IS P    +  ++    +  L  +      RM    V+PD      +L +CS  G 
Sbjct: 372 MFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGI 431

Query: 543 SEMGK--YAAEKLFLAQPD 559
            ++G   ++A   FL   D
Sbjct: 432 LDLGTQVHSASVRFLLHND 450



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 236/517 (45%), Gaps = 82/517 (15%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+RL+ + +  G       L    ++ F      N Y+       +N+ LS   +   + 
Sbjct: 46  INRLVELYSVSG-------LPCDALRAFRSLPRPNAYS-------YNAALSAARRAGDLD 91

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILS 164
            A  L D+MP R+ VSWNT+++   R+         ++  L  G   L    FT+  +LS
Sbjct: 92  AARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREG---LVPTHFTLASVLS 148

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           AC         +  H L    G +E + V NAL+  Y KCG      ++F  M   N ++
Sbjct: 149 ACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVS 208

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM-HLGL-INPNSLTYL--SSVMACSG----LQALCEG 276
           +TA++ GLVQ    ++ L+LF +M   G+ ++P +++ +  S   AC+     ++A   G
Sbjct: 209 FTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLG 268

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           + IH ++ +    SD  + ++L+DMY+KC  +++A ++F+    +  VS  +++ GF Q 
Sbjct: 269 QCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQA 328

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G   +A+++   M ++G E  PN V+                                  
Sbjct: 329 GSYAKALEVLNLMEESGSE--PNEVT---------------------------------- 352

Query: 397 NGLINMYSKCGDLEDSIK---VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
               NM + C    D +    +F +++  +  +WN++++ + +       +EL+  M+ +
Sbjct: 353 --YSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQ 410

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGR 507
            V+P   T   +L +CS +G+++ G       T+VH  S R   +      + +VDM  +
Sbjct: 411 NVQPDRTTLAVILSSCSRLGILDLG-------TQVHSASVRFLLHNDMFVASGLVDMYSK 463

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G +  AR    RM  + DV+ W +++   +IH  +E
Sbjct: 464 CGQIGIARIIFNRM-TERDVVCWNSMISGLAIHSLNE 499



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 173/408 (42%), Gaps = 49/408 (12%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  ++ G   LG  +H++ ++          + + N   + + L+  Y KC Q+  A 
Sbjct: 422 ILSSCSRLGILDLGTQVHSASVR----------FLLHNDMFVASGLVDMYSKCGQIGIAR 471

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +F+ M  RD V WN+M+SG   +   +  F FFK+    G     ++S+  ++++C R 
Sbjct: 472 IIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPT-ESSYASMINSCARL 530

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + IH  +   GY++ V VG+ALI  Y KCG+    R  F  M  +N++ W  +I
Sbjct: 531 SSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMI 590

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            G  QN   E+ + LF  M      P+ +T+++ +  CS                     
Sbjct: 591 HGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCS--------------------- 629

Query: 290 SDLCIESALMD-MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
                 S L+D   +   S+E  + I   AE       T ++ G  + G   E   L   
Sbjct: 630 -----HSGLVDEAIAFFNSMESTYGITPLAEHY-----TCLIDGLGRAGRLVEVEALIDN 679

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M     + DP +   +L    V  +  LG+     + + D   NP     L N+Y+  G 
Sbjct: 680 MP---CKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLD-PKNPSPYVLLSNIYASLGR 735

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
             D+  V + M+ R  V       ++  H +G  A  + ++++ +G E
Sbjct: 736 HGDASGVRALMSSRGVVKGRGY--SWIDHKDGVHAFMVADDLQTDGGE 781



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 31/126 (24%)

Query: 384 IIKSDFTSNPFVNNGLINMYS-------------------------------KCGDLEDS 412
           ++ +   ++ F+ N L+ +YS                               + GDL+ +
Sbjct: 34  VLAAGLGADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAA 93

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
             +   M  RN VSWN++IAA AR     +ALELYE M  EG+ PT  T  S+L AC  V
Sbjct: 94  RALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAV 153

Query: 473 GLVNKG 478
             ++ G
Sbjct: 154 AALDDG 159


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 197/668 (29%), Positives = 332/668 (49%), Gaps = 73/668 (10%)

Query: 28  IIQDPTSSTSKLVLDNYVDISRLLSISAKEGH--FHLGPSLHASFIKTFEPFDNQNVYNV 85
           ++++PT ST  + L  +     + ++ +   H   H  P  H   IK F    N+  +N 
Sbjct: 92  LVKNPTGSTGAVSLKLFASSCHMKNLLSLVHHSLRHKSP-YHLEHIKPFSFTTNKPKWNS 150

Query: 86  PNATVIWNSLLSFYLKCDQMRN-------------------------------------A 108
           P   +I N  L     C  MR                                      A
Sbjct: 151 PTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYA 210

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
             +F+ +   +T  WNTM+ G+    +    F FF    +L   ++D  SF   L AC +
Sbjct: 211 HTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRV-EMDSRSFVFALKACQQ 269

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
            E     + ++C+V+  G++ E+ V N LI  Y + G   + R+VF E   ++V+TWT +
Sbjct: 270 FETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTM 329

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL 288
           I G   +   EE +++F  M L  + PN +T ++ V ACS +  L  G+++H  + +  +
Sbjct: 330 IDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNM 389

Query: 289 QSDLCIESALMDMY-------------------------------SKCGSVEDAWQIFEF 317
           +  L + +AL+DMY                               +KCG +E A + F+ 
Sbjct: 390 RCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQ 449

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
               + V  + ++ G++QN   +E+++LF +M++ G+    + + +VL   G  T L LG
Sbjct: 450 TPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLG 509

Query: 378 KQIHS-LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
             IH   ++      +  + N +++MY+KCG ++ + +VFS M  RN +SWN+MIA +A 
Sbjct: 510 DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA 569

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G   +A+ ++++M+  G EP ++TF+SLL ACSH GL+++G E+  +M   + I P   
Sbjct: 570 NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERG 629

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HYAC+VD++GR GLL EA   I  MP++P    W ALL AC +HG+ E+ + +A  L   
Sbjct: 630 HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL 689

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            P+    Y+L+AN  +   +W +  +    MK+ GV K  G S IEI+     F+V D+ 
Sbjct: 690 DPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADES 749

Query: 617 HPQADTIH 624
           HPQ++ I+
Sbjct: 750 HPQSEEIY 757


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 291/514 (56%), Gaps = 2/514 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           +A+V+ N+L+  Y KC ++  A +LFD M  R+ VSW TM++G+++N         F + 
Sbjct: 272 DASVV-NALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQL 330

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            + G +Q D  + T IL++C         + +H  V     E +  V NALI  Y KC  
Sbjct: 331 SQAG-WQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEH 389

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            +  R VF  +   + I++ A+I G  +       +++F KM    + P+ LT++S +  
Sbjct: 390 LTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGV 449

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S    L   +QIHG++ K     DL   SAL+D+YSK   V+DA  +F   +  D V  
Sbjct: 450 SSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIW 509

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G AQN   EEA++LF ++  +G+  +     A++ V     S+  G+Q H+ IIK
Sbjct: 510 NAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIK 569

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+P ++N LI+MY+KCG +E+   +F     ++ + WNSMI+ +A+HG+  +AL +
Sbjct: 570 AGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHV 629

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M+  GVEP  VTF+S+L AC+H GLV++G+    SM   + + P  EHYA VV++ G
Sbjct: 630 FGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFG 689

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+G L  A+ FIERMP++P   +W++LL AC + G+ E+G+YA E   LA P    P +L
Sbjct: 690 RSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVL 749

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
           M+NIY+  G W +  K  + M   GV KE G SW
Sbjct: 750 MSNIYASKGLWADAQKLRQGMDCAGVVKEPGYSW 783



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 242/453 (53%), Gaps = 19/453 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL  Y K  ++ +A +LFD MP R+ VSW + +S + ++G  D     F      G  
Sbjct: 69  NLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAA 128

Query: 153 QLDQAS-----FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             D            L AC +S  +   + +H +    G +  V VG AL+  Y K G  
Sbjct: 129 SPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRI 188

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
            +   VF  +  RN +TWTAVI+G  Q       L+LF +M L  + P+     S+  AC
Sbjct: 189 DAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASAC 248

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           SGL  +  GRQIHG  ++ A +SD  + +AL+D+Y KC  +  A ++F+  E  + VS T
Sbjct: 249 SGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWT 308

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G+ QN  + EAM +F ++ +AG + D    +++L   G   ++  G+Q+H+ +IK+
Sbjct: 309 TMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKA 368

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           D  S+ +V N LI+MY+KC  L ++  VF  +A  +++S+N+MI  +AR G+   A+E++
Sbjct: 369 DLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIF 428

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYA--CV 501
            +M+   ++P+ +TF+SLL        V+     L+   ++H +  ++    + YA   +
Sbjct: 429 GKMRYCSLKPSLLTFVSLLG-------VSSSRSDLELSKQIHGLIVKSGTSLDLYAGSAL 481

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           +D+  +  L+ +A+     M  + D+++W A++
Sbjct: 482 IDVYSKFSLVDDAKLVFSLMQNR-DMVIWNAMI 513



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/459 (29%), Positives = 248/459 (54%), Gaps = 13/459 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +L++ Y K  ++  A+ +FD +P R+ V+W  +++G+ + G+  +    F R   +G
Sbjct: 174 VGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGR---MG 230

Query: 151 FYQLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              +    F +  +A   S L  V   + IH   Y    E + +V NALI  Y KC    
Sbjct: 231 LDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLL 290

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R++F  M  RN+++WT +I+G +QN L  E + +F ++      P+     S + +C 
Sbjct: 291 LARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCG 350

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L A+ +GRQ+H  + K  L+SD  +++AL+DMY+KC  + +A  +FE   E D +S   
Sbjct: 351 SLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNA 410

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIK 386
           ++ G+A+ G    A+++F KM    ++  P++++  ++LGV    + L L KQIH LI+K
Sbjct: 411 MIEGYARLGDLTGAVEIFGKMRYCSLK--PSLLTFVSLLGVSSSRSDLELSKQIHGLIVK 468

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S  + + +  + LI++YSK   ++D+  VFS M  R+ V WN+MI   A++  G +A++L
Sbjct: 469 SGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKL 528

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYACVVDMV 505
           +  +++ G+ P + TF++L+   S +  +  G +F   + +    S P   +   ++DM 
Sbjct: 529 FARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISN--ALIDMY 586

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            + G + E R   E    K DV+ W +++   + HG +E
Sbjct: 587 AKCGFIEEGRLLFESTLGK-DVICWNSMISTYAQHGHAE 624



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 191/391 (48%), Gaps = 14/391 (3%)

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           ++LS      L  V    H    + G   ++ + N L+  Y K G     R++F  M  R
Sbjct: 35  LLLSCLAGDRLRRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSR 94

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLIN-----PNSLTYLSSVMACSGLQALC 274
           N+++W + IS   Q+   ++ L LF      G  +     PN     S++ AC+  +A  
Sbjct: 95  NLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAAR 154

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+HG+  KL L +++ + +AL+++Y+K G ++ A  +F+     + V+ T ++ G++
Sbjct: 155 FGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYS 214

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           Q G    A++LF +M   G+  D   + SA     G+    G G+QIH    ++   S+ 
Sbjct: 215 QAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEG-GRQIHGYAYRTAAESDA 273

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            V N LI++Y KC  L  + ++F  M  RN VSW +MIA + ++    +A+ ++ ++   
Sbjct: 274 SVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQA 333

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLL 511
           G +P      S+L++C  +  + +G +       V +    ++ Y    ++DM  +   L
Sbjct: 334 GWQPDVFACTSILNSCGSLAAIWQGRQV---HAHVIKADLESDEYVKNALIDMYAKCEHL 390

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            EAR+  E +  + D + + A++   +  GD
Sbjct: 391 TEARAVFEAL-AEDDAISYNAMIEGYARLGD 420



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 25/209 (11%)

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+  + S    + F+ N L+  YSK G L D+ ++F  M  RN VSW S I+ +A+HG  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 441 FKALELYEEMKLEGVE------PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
             AL L+      G        P +    S L AC+       G        +VH ++ +
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFG-------EQVHGVAAK 165

Query: 495 AEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
               A V      V++  +AG +  A S  + +P +  V  W A++   S  G + +   
Sbjct: 166 LGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPV-TWTAVITGYSQAGQAGVALE 224

Query: 549 AAEKLFL--AQPDSPAPYILMANIYSCSG 575
              ++ L   +PD    ++L +   +CSG
Sbjct: 225 LFGRMGLDGVRPDR---FVLASAASACSG 250


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 279/518 (53%), Gaps = 1/518 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N LL  Y  C    +  K+FD+M M++ VSW  ++S + +NGE +     F   ++  
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFS-DMQAS 182

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + + A +  +L +C       + K +H  V        +TV  A+   Y +CG     
Sbjct: 183 GIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGA 242

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF  M  +N +TWT ++ G  Q +  E  L+LF +M +  +  +   +   +  C  L
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXL 302

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           +    G+QIH  + KL  +S++ + + L+D Y KCG +E A++ F    E + VS + ++
Sbjct: 303 EDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            GF+Q+G  E+ +++F  +   G+ ++  + ++V        +L +G Q H   IK    
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S  +  + ++ MYSKCG L+ + + F  +   ++V+W ++I+ +A HGN  +AL  +  M
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           +  GV P  VTF+++L ACSH GLV +  ++L SM+  + + P  +HY C++D   RAGL
Sbjct: 483 QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGL 542

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA   I RMP +PD + W++LLG C  H D ++GK AAE LF   P   A YIL+ N+
Sbjct: 543 LXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNL 602

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
           YS  G+W+E     K M E  + KE   SWI ++ QVH
Sbjct: 603 YSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVH 640



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/422 (29%), Positives = 214/422 (50%), Gaps = 13/422 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           S+  +  AC +       ++IH  +         ++ N L+  Y  CGS    +KVF EM
Sbjct: 89  SYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEM 148

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            ++N+++W  VIS   +N   E+ ++LF  M    I PNS  Y+S + +C G   L  G+
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H  + +  L +++ +E+A+ +MY +CG +E A  +F+  +  + V+ T ++VG+ Q  
Sbjct: 209 QMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAK 268

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E A++LF +M   G+E+D  + S VL V        +GKQIHS I+K    S   V  
Sbjct: 269 KLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGT 328

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++ Y KCGD+E + + F R++  N VSW+++I+ F++ G     ++++  ++ EGV  
Sbjct: 329 PLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVL 388

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
               + S+  AC+    +N G +      +   +S      A +V M  + G L  AR  
Sbjct: 389 NSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESA-MVTMYSKCGRLDYARRA 447

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL-FLAQPDS----PAPYILMANIYS 572
            E +  +PD + W A++   + HG+      AAE L F  +  S    P     +A + +
Sbjct: 448 FESID-EPDAVAWTAIISGYAYHGN------AAEALGFFRRMQSYGVRPNAVTFIAVLTA 500

Query: 573 CS 574
           CS
Sbjct: 501 CS 502



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           LV  ++ G  +EA     +M  A + + P+    +    G   SL  G+ IH  + ++  
Sbjct: 59  LVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVK 118

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             +  + N L+ MY  CG   D  KVF  M  +N VSW  +I+A+A++G   KA+ L+ +
Sbjct: 119 NPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSD 178

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVD 503
           M+  G+ P    ++SLL +C        G  FL+   ++H    RA+  A       + +
Sbjct: 179 MQASGIRPNSAVYMSLLQSC-------LGPSFLELGKQMHSHVIRAQLNANITVETAICN 231

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           M  R G L  A+   + M  + + + W  L+
Sbjct: 232 MYVRCGWLEGAKLVFDGMDAQ-NAVTWTGLM 261


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 310/560 (55%), Gaps = 16/560 (2%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  M +A K+FD++P R+  +W T+++G+++N    +    F + LE G Y  
Sbjct: 99  LVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYP- 157

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGY--EEEVTVGNALITSYFKCGSSSSGRK 212
              +  I+L+AC   +     K +H   YL  Y  + + ++GN+L + Y K        K
Sbjct: 158 SNYTLGIVLNACSSLQSIEFGKQVH--AYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIK 215

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
            F  ++ ++VI+WT+VIS    N      L  F+ M    + PN  T  S + AC  +  
Sbjct: 216 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLT 275

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G QIH +  KL   S + I++++M +Y KCG + +A ++FE  E L+ V+   ++ G
Sbjct: 276 LDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAG 335

Query: 333 FAQ-----------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            A+           +     A+ +F K+ ++G++ D    S+VL V     +L  G+QIH
Sbjct: 336 HAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIH 395

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             IIKS   ++  V   L++MY+KCG ++ + K F  M  R  +SW SMI  FARHG   
Sbjct: 396 GQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQ 455

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           +AL+L+E+M+L G++P  VTF+ +L ACSH GL ++ + + + M + + I P  +H+AC+
Sbjct: 456 QALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACL 515

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561
           +DM  R G + EA   + +M  +P+  +W  L+  C  HG S++G YAAE+L   +P   
Sbjct: 516 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKLKPKDV 575

Query: 562 APYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD 621
             Y+ + N++  +GRWK+ +K  K MKE  V K    SWI I+++V+SF  +DK H Q+ 
Sbjct: 576 ETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKSHCQSL 635

Query: 622 TIHGVLAELLRLMIDEGYVP 641
            ++ +L  +L  +   GY P
Sbjct: 636 EMYKLLETVLNEVKALGYEP 655



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/403 (29%), Positives = 207/403 (51%), Gaps = 13/403 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           +++ + +  +L  C    L+  ++MIH  +   G+ E++ V   L+  Y KCG   S  K
Sbjct: 55  RIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHK 114

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  RNV  WT +++G VQN      L+LF+KM      P++ T    + ACS LQ+
Sbjct: 115 VFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQS 174

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  L K  +  D  I ++L   YSK   +E A + F+  +E D +S T ++  
Sbjct: 175 IEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISS 234

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
              NG    ++  F+ M+  G++ +   +++VL    V  +L LG QIHSL IK  + S+
Sbjct: 235 CCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSS 294

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR-----------HGNGF 441
             + N ++ +Y KCG L ++ K+F  M   N V+WN+MIA  A+           H +G 
Sbjct: 295 ILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGS 354

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
            AL +++++   G++P   TF S+L  CS++  + +G +    + +   ++      A +
Sbjct: 355 TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTA-L 413

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           V M  + G + +A      MP +  ++ W +++   + HG S+
Sbjct: 414 VSMYNKCGSIDKASKAFLEMPSRT-MISWTSMITGFARHGLSQ 455



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 211/423 (49%), Gaps = 33/423 (7%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
            G  +HA  IK    FD          T I NSL SFY K  ++  A+K F  +  +D +
Sbjct: 177 FGKQVHAYLIKYHIDFD----------TSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVI 226

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW +++S    NG+      FF   L  G  + ++ + T +LSAC       +   IH L
Sbjct: 227 SWTSVISSCCDNGQAARSLSFFMDMLSDGM-KPNEYTLTSVLSACCVMLTLDLGAQIHSL 285

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG---------- 231
               GY   + + N+++  Y KCG     +K+F  M   N++TW A+I+G          
Sbjct: 286 SIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAED 345

Query: 232 -LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
            +  ++     L +F K++   + P+  T+ S +  CS L AL +G QIHG + K  + +
Sbjct: 346 DVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLA 405

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
           D+ + +AL+ MY+KCGS++ A + F        +S T ++ GFA++G  ++A+QLF  M 
Sbjct: 406 DVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMR 465

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKC 406
             GI+  PN V+ V GV    +  GL  +   +  +++  +   P +++   LI+MY + 
Sbjct: 466 LVGIK--PNQVTFV-GVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRL 522

Query: 407 GDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLS 464
           G +E++  V  +M    N   W+ +IA    HG     L  Y   +L  ++P DV T++S
Sbjct: 523 GRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKS--DLGFYAAEQLLKLKPKDVETYVS 580

Query: 465 LLH 467
           LL+
Sbjct: 581 LLN 583


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 319/582 (54%), Gaps = 40/582 (6%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  A+ +F+ +   + + WNTM  G   N +       +   + LG    +  SF  +
Sbjct: 13  DGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLP-NSYSFPFL 71

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN--------------------------- 195
           L +C +S+  +  + IH  V   GY+ ++ V                             
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 196 ----ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G  ++ RK+F E+ V++V++W A+ISG V+   ++E L+L+  M   
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+  T ++ V AC+   ++  GRQ+H  +      S++ I + L+D+YSKCG VE A
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETA 251

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +F+   + D +S   ++ G       +EA+ LF +M+++G    PN V+ +L V    
Sbjct: 252 CGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES--PNDVT-MLSVLPAC 308

Query: 372 TSLG---LGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             LG   +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF  M  R+  S
Sbjct: 309 AHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS 368

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+MI  FA HG    A +L+ +M+  G++P D+TF+ LL ACSH G+++ G    +SM+
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + ++I+P+ EHY C++D++G  GL  EA+  I  MP++PD ++W +LL AC +H + E+G
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELG 488

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           +  A+ L   +P++P  Y+L++NIY+ +GRW + AK    + + G+ K  G S IEI+  
Sbjct: 489 ESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSV 548

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           VH F++ DK HP+   I+ +L E+  LM + G+VP+   +L 
Sbjct: 549 VHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQ 590


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 204/619 (32%), Positives = 331/619 (53%), Gaps = 47/619 (7%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           +HA  IKT       +  N   + +I  S+LS +   D +  A+ +FD +   + + WNT
Sbjct: 21  IHAKMIKT-----GLHNTNYALSKLIEFSVLSPHF--DGLTYAISVFDSIQEPNLLIWNT 73

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           M  G   + +       +   + LG    +  +F  +L AC +S+     + IH  V   
Sbjct: 74  MFRGHALSSDPVSALYLYVCMISLGLVP-NSYTFPFLLKACAKSKAFREGQQIHGHVLKL 132

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFG------------------------------ 215
           G + ++ V  +LI  Y K G     RKVF                               
Sbjct: 133 GCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMF 192

Query: 216 -EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E+ V++V++W A+ISG  +   Y+E L+LF +M    + P+  T ++ + AC+   ++ 
Sbjct: 193 DEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            GRQ+H  +      S+L I +AL+D+Y KCG VE A  +FE     D +S   ++ G+ 
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKS-DFT 390
                +EA+ LF +M+++G    PN V+ +L +      LG   +G+ IH  I K     
Sbjct: 313 HMNLYKEALLLFQEMLRSGES--PNEVT-MLSILPACAHLGAIDIGRWIHVYIDKRLKGV 369

Query: 391 SNPF-VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           SNP  +   LI+MY+KCGD+E + +VF  M  R+  SWN+MI  FA HG    A +++  
Sbjct: 370 SNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSR 429

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ +G+EP D+TF+ LL ACSH G+++ G    +SMTE ++I+P+ EHY C++D++G +G
Sbjct: 430 MRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSG 489

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           L  EA   I  M + PD ++W +LL AC +HG+ E+G+  A+ L   +P +   Y+L++N
Sbjct: 490 LFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSN 549

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +GRW E AK    + + G+ K  G S IEI+  VH F++ DK+HP+   I+G+L E
Sbjct: 550 IYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEE 609

Query: 630 LLRLMIDEGYVPNKRFILH 648
           +  L+ + G+VP+   +L 
Sbjct: 610 MEVLLEEAGFVPDTSEVLQ 628



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 194/387 (50%), Gaps = 9/387 (2%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNA--TVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
            ++  SL A ++K     D + V++  +    V + +L+  Y     + +A K+FD++P+
Sbjct: 138 LYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPV 197

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           +D VSWN ++SG+   G +      FK  ++    + D+++   +LSAC +S    + + 
Sbjct: 198 KDVVSWNALISGYAETGNYKEALELFKEMMKTNV-KPDESTMVTVLSACAQSASIELGRQ 256

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H  +   G+   + + NALI  Y KCG   +   +F  +  ++VI+W  +I G     L
Sbjct: 257 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNL 316

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL--ALQSDLCIE 295
           Y+E L LF +M     +PN +T LS + AC+ L A+  GR IH  + K    + +   + 
Sbjct: 317 YKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR 376

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+DMY+KCG +E A Q+F+        S   ++ GFA +G    A  +F +M K GIE
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSI 413
            D      +L        L LG+ I   + + D+   P + +   +I++    G  +++ 
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTE-DYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 414 KVFSRMA-PRNSVSWNSMIAAFARHGN 439
           ++ + M    + V W S++ A   HGN
Sbjct: 496 EMINSMEMDPDGVIWCSLLKACKMHGN 522


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/478 (36%), Positives = 283/478 (59%), Gaps = 12/478 (2%)

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           +++I  L Y  G+     +G+ L++ YFK G     +++F EM  +++++W +++SGL  
Sbjct: 143 ARVIKSLNYSDGF-----IGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSG 197

Query: 235 NQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
                  L  F +M       PN +T LS V AC+ + AL EG+ +HG++ KL +     
Sbjct: 198 RGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAK 257

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L++MY K G ++ A Q+FE       VS   ++V    NG+ E+ M LF  M +AG
Sbjct: 258 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 317

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
           I  D   + A+L      T  GLG+Q   IH+ I +  F ++  +   L+N+Y+K G L 
Sbjct: 318 INPDQATMVALLRAC---TDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLN 374

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            S  +F  +  R+ ++W +M+A +A H  G +A++L++ M  EGVE   VTF  LL ACS
Sbjct: 375 ASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS 434

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV +G ++ + M+EV+R+ PR +HY+C+VD++GR+G L +A   I+ MP++P   VW
Sbjct: 435 HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVW 494

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            ALLGAC ++G+ E+GK  AE+L    P     YI+++NIYS +G W++ +K    MKE 
Sbjct: 495 GALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKER 554

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            + +  G S+IE   ++H FVV D++HP++D IH  L EL+R + + G  P   F+LH
Sbjct: 555 RLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLH 612



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 219/462 (47%), Gaps = 46/462 (9%)

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           ++HA  IK+    D            I + L+S Y K     +A +LFD+MP +D VSWN
Sbjct: 140 AIHARVIKSLNYSDG----------FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWN 189

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           +++SG    G        F R       Q ++ +   ++SAC         K +H +V  
Sbjct: 190 SLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVK 249

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G   +  V N+LI  Y K G   +  ++F EM VR++++W +++     N   E+G+ L
Sbjct: 250 LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDL 309

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    INP+  T ++ + AC+      +   IH  + +    +D+ I +AL+++Y+K
Sbjct: 310 FNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAK 369

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
            G +  +  IFE  ++ D ++ T +L G+A +    EA++LF  MVK G+E+D    + +
Sbjct: 370 LGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHL 429

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-- 420
           L        +  GK+    I+   +   P +++   ++++  + G LED+ ++   M   
Sbjct: 430 LSACSHSGLVEEGKKYFE-IMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME 488

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTD-VTFLSLLHACSHVGL--- 474
           P + V W +++ A   +GN    +EL +E+  +L  ++P+D   ++ L +  S  GL   
Sbjct: 489 PSSGV-WGALLGACRVYGN----VELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 543

Query: 475 --------------VNKGMEFLKSMTEVHR------ISPRAE 496
                          N G  F++   ++HR      + PR++
Sbjct: 544 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSD 585


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 303/562 (53%), Gaps = 6/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ NSL+  Y K   +  A +LF  M  +DTV++N++++G+   G  +     F   LEL
Sbjct: 176 MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF---LEL 232

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               +  + FT   +LSA    + +   + +H  V    +   V VGNAL+  Y K    
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               K+F EM   + I++  VI+    N  ++E   LF K+     +     + + +   
Sbjct: 293 DEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIA 352

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L  GRQIH     +    +  +E+AL+DMY+KC   ++A +IF+       V  T
Sbjct: 353 TSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWT 412

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  + Q G  EE + +F  M + G+  D    +++L       S+ LG+Q+HSL+I+S
Sbjct: 413 AMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS 472

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SN +  + L++ Y+KCG + D+IK F  M  RNSVSWN++I+A+A++GN    L  +
Sbjct: 473 GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSF 532

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           ++M   G +P  V+FLS+L ACSH G V + +    SMT+++ ++P+ EHY  +VD++ R
Sbjct: 533 QQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCR 592

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYIL 566
            G   EA   +  MP +P  ++W ++L +C IH + E+ K AA++LF +      APYI 
Sbjct: 593 NGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYIN 652

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           M+NIY+ +G+W   AK  K M++ GV K    SW+EI+ Q H F  +DK HP+   I   
Sbjct: 653 MSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRK 712

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           +  L + M  +GY P+    LH
Sbjct: 713 INALSKEMEKKGYKPDTTCALH 734



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 261/535 (48%), Gaps = 36/535 (6%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           LNSN      L+   I K   +P +  S   ++N+++   L+       H H        
Sbjct: 24  LNSN-----HLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLV-------HAH-------- 63

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
                + FD     N    T+  N ++S +LK  ++  A +LFD M  R  VSW  ++ G
Sbjct: 64  -----QVFDQMPAKN----TISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGG 114

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           +L++ +    F  +   +  G  + D  +   +LS     E   V   IH  V   GYE 
Sbjct: 115 YLQSNQSKEAFRLYA-DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
            + V N+L+ +Y K        ++F  M  ++ +T+ ++++G     L EE ++LF+++H
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
              I P+  T+ + + A  GL     G+Q+HG + K     ++ + +AL+D YSK   V+
Sbjct: 234 NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD 293

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           +  ++F    ELDG+S  V++  +A NG  +E+  LF K+     +      + +L +  
Sbjct: 294 EVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIAT 353

Query: 370 VDTSLGLGKQIH--SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
              +L +G+QIH  ++ + ++F S   V N L++MY+KC   +++ K+F  +A +++V W
Sbjct: 354 SSLNLRMGRQIHCQAITVGANFESR--VENALVDMYAKCNGDKEAQKIFDNIACKSTVPW 411

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +MI+A+ + G   + + ++ +M+  GV     TF S+L AC+++  ++ G + L S+  
Sbjct: 412 TAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQ-LHSLLI 470

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
                      + ++D   + G + +A      MP +  V  W AL+ A + +G+
Sbjct: 471 RSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV-SWNALISAYAQNGN 524



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 32/259 (12%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           SL     I + I+K+ F  N   +N  +N + + GDL  + +VF +M  +N++S N MI+
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
              + G   KA EL++ M    VE T V++  L+         N+  E  +   ++ R  
Sbjct: 83  GHLKFGKLSKARELFDGM----VERTAVSWTILIGGYLQ---SNQSKEAFRLYADMRRGG 135

Query: 493 PRAEHYACVVDMVG-----RAGLLIEARSFIERMPVKPDVLVWQALLGA-CSIHGDSEMG 546
              ++   V  + G        ++++  + + ++  + +++V  +L+ A C  H      
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH-----C 190

Query: 547 KYAAEKLF--LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE--------- 595
            Y A +LF  +   D+     LM   YS  G  +E  +    +   G+            
Sbjct: 191 LYLASQLFKHMLNKDTVTFNSLMTG-YSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 596 --TGISWIEIEKQVHSFVV 612
              G+   +  +QVH FV+
Sbjct: 250 AAVGLDDTKFGQQVHGFVL 268


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/547 (34%), Positives = 297/547 (54%), Gaps = 10/547 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L+  Y +C  +R A ++F  M   D V + ++VS   RNGE         +    G
Sbjct: 173 IGSCLIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQG 232

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q ++ + T +L+ C R     + + IH  +      + V    ALI  Y + G   + 
Sbjct: 233 L-QPNEHTMTSMLAECPRG----IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTA 287

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           + VF  +  +NV++W +++   +++   ++ L++F +M    + PN   +  ++ AC   
Sbjct: 288 KTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACG-- 345

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            ++C GRQIH    K  L +D+ + +AL+ MY + G V +   +    E  D VS T  +
Sbjct: 346 -SVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAI 404

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
               QNGF E+A+ L ++M   G   +    S+ L        L  G+Q+H L +K    
Sbjct: 405 SANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCD 464

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
                 N LINMYSKCG +  +   F  M   + +SWNS+I   A+HG+   ALE + EM
Sbjct: 465 FKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEM 524

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
                 P D TFLS+L  C+H GLV +G  F + MT+ + ++P   HYAC++DM+GR G 
Sbjct: 525 CSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGR 584

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMAN 569
             EA   IE MP +PDVL+W+ LL +C +H + ++GK AA+KL  L++ DS A Y+LM+N
Sbjct: 585 FAEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDS-ASYVLMSN 643

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           +Y+    W++  +  +RM E+GV K+ G SWIE++ +V++FV  D  HP + +I+ +LAE
Sbjct: 644 LYAMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKNEVNTFVAGDMSHPDSTSIYQMLAE 703

Query: 630 LLRLMID 636
           LL +M D
Sbjct: 704 LLVVMQD 710



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/466 (27%), Positives = 225/466 (48%), Gaps = 20/466 (4%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           P   V+    L   +K  ++ +A+ LFD MP ++ V+W T +SG  RNG  +     F  
Sbjct: 67  PPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFAD 126

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            LE G    D A    + +    +    + + +H L    G+  +  +G+ LI  Y +CG
Sbjct: 127 MLESGVAPNDFACNAALAAC-AAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCG 185

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           S  +  +VF  M   +V+ +T+++S L +N      + +  +M    + PN  T  S + 
Sbjct: 186 SLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLA 245

Query: 266 ACS-GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
            C  G+     G QIHG + K+     +   +AL+D YS+ G    A  +FE  E  + V
Sbjct: 246 ECPRGI-----GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVV 300

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S   ++    ++G  ++A+++F +M+  G++ +    S  L   G   S+ LG+QIH   
Sbjct: 301 SWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACG---SVCLGRQIHCSA 357

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           IK D  ++  V+N L++MY + G + +   V  ++   + VSW + I+A  ++G   KA+
Sbjct: 358 IKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 417

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYAC 500
            L  +M  EG  P D  F S L +C+ + L+++G +     LK   +    +  A     
Sbjct: 418 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNA----- 472

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           +++M  + G +  AR   + M    DV+ W +L+   + HGD+ + 
Sbjct: 473 LINMYSKCGRIGSARLAFDVMDTH-DVMSWNSLIHGLAQHGDANLA 517



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 184/382 (48%), Gaps = 28/382 (7%)

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            K G       +F  M  +NV+ WT  ISG  +N   E    +F  M    + PN     
Sbjct: 81  MKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACN 140

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           +++ AC+   AL  G Q+H +  +    +D  I S L+++YS+CGS+  A ++F   E  
Sbjct: 141 AALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAP 200

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D V  T ++    +NG    A+ +  +M + G++ + + ++++L     +   G+G+QIH
Sbjct: 201 DVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLA----ECPRGIGEQIH 256

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
             ++K   + + + +  LI+ YS+ GD   +  VF  +  +N VSW SM+    R G   
Sbjct: 257 GYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLD 316

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS------MTEVHRISPRA 495
            AL ++ EM  EGV+P +  F   L AC  V L   G +   S      MT++ R+S   
Sbjct: 317 DALRVFSEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRDLMTDI-RVS--- 369

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
                ++ M GR+G + E  + + ++   PD++ W A + A   +G SE     A  L L
Sbjct: 370 ---NALLSMYGRSGFVSELEAVLGKIE-NPDLVSWTAAISANFQNGFSE----KAVALLL 421

Query: 556 ---AQPDSPAPYILMANIYSCS 574
              ++  +P  Y   + + SC+
Sbjct: 422 QMHSEGFTPNDYAFSSGLSSCA 443


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/605 (30%), Positives = 322/605 (53%), Gaps = 15/605 (2%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LL    + G    G  LHA  + +              +T + N L++ Y  C  
Sbjct: 171 VHLASLLQSCGRAGDLRRGRLLHARLVLSGA---------AAASTFLANHLITMYSHCAD 221

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           + +A++LF  MP R+ VSW T+VSG  +N    M          +    +    F +  +
Sbjct: 222 LASALRLFAAMPRRNAVSWTTLVSGLSQN---LMHADALAAFAAMRRAGVAPTRFALSSA 278

Query: 165 ACDRSELSLVSKMIHCLVYL-CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
           A   + L    +   C      G++ E+ V + L   Y KCG  S   +VF +M  ++ +
Sbjct: 279 ARAAAALGAPLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAV 338

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
            WTA+I G  +N   E  +  F  M   GL+  +   + S + A  GL+     + IH  
Sbjct: 339 AWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCC 398

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-AEELDGVSMTVILVGFAQNGFEEE 341
           + K   + ++ + +AL+DMY+K   VE A ++ +      + VS T ++ G+ +    EE
Sbjct: 399 VTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEE 458

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ ++V++ + G+E +    S+++    +   L  G Q+H+ +IK+D   + FV + L++
Sbjct: 459 ALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVD 518

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY KCG +  S+++F+ +  R  ++WN++I  FA+HG+G +A++ ++ M   G+ P  + 
Sbjct: 519 MYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIA 578

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F+SLL ACSH GLV++G+++  SM E H I P+ EHY+C++D  GRAG L EA  FI  M
Sbjct: 579 FVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM 638

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P+KP+   W +LLGAC + G  E+G+ AA+ L   +P +   ++ ++ IY+  G+W++  
Sbjct: 639 PIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVK 698

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
              K M++  + K  G SW++  K+ H F  +D  HPQ   I+  L EL   + +EGY+P
Sbjct: 699 AVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIP 758

Query: 642 NKRFI 646
           +  F+
Sbjct: 759 DTSFL 763



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 152/598 (25%), Positives = 256/598 (42%), Gaps = 67/598 (11%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           V ++ LL    + G    G  LHA  + +              +T + N L++ Y  C  
Sbjct: 21  VHLASLLQSCGRAGDLRRGRLLHARLVLSGA---------AAASTFLANHLITMYSHCAD 71

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRN-----------GEFDMGFGFFKRSLELGFYQ 153
           + +A++LF  MP R+ VSW T+VSG  +N                G    +   E  F+ 
Sbjct: 72  LASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHN 131

Query: 154 LDQASFTIILSACDRSELSLV------------------------------------SKM 177
                 T+  S C      +V                                     ++
Sbjct: 132 TLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRL 191

Query: 178 IHCLVYLCGYEEEVT-VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           +H  + L G     T + N LIT Y  C   +S  ++F  M  RN ++WT ++SGL QN 
Sbjct: 192 LHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNL 251

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
           ++ + L  F  M    + P      S+  A + L A    R        +   ++L + S
Sbjct: 252 MHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASA-SVGFDTELFVAS 310

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG-IE 355
            L DMYSKCG + +A ++F+   + D V+ T ++ G+A+NG  E A+  F  M + G + 
Sbjct: 311 NLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVG 370

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D ++  +VL   G      L K IH  + K+ F     V N LI+MY+K  D+E + +V
Sbjct: 371 ADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRV 430

Query: 416 FSRMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
             ++ P   N VS  SMI  +       +AL +Y E++ +GVEP + TF S++  C+   
Sbjct: 431 L-KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQA 489

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           L+ +G +    + +   I       + +VDM G+ GL+  +      +  + D+  W A+
Sbjct: 490 LLEQGAQLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFNEIEYRTDI-AWNAV 547

Query: 534 LGACSIHGDSEMGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           +   + HG       A +++  +  +P+  A ++ +    S +G   E  K    MKE
Sbjct: 548 INVFAQHGHGREAIQAFDRMIYSGIRPNHIA-FVSLLTACSHAGLVDEGLKYFYSMKE 604


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 307/558 (55%), Gaps = 5/558 (0%)

Query: 81  NVYNVPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139
            + N  +A++ + N+ L  + K   + +A  LF+ +  +DTVSWN ++ G   N E +  
Sbjct: 327 TIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEA 386

Query: 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALIT 199
               K  + L     D+ SF  +++AC     +   K IHCL           VG++LI 
Sbjct: 387 IHMLK-GMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLID 445

Query: 200 SYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
            Y K G   S RKV  ++   +++    +I+GLVQN   +E + LF ++    + P+S T
Sbjct: 446 FYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFT 505

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESALMDMYSKCGSVEDAWQIF-EF 317
           + S +  C+GL +   G+Q+H    K   L  D  +  +L+  Y K    EDA ++  E 
Sbjct: 506 FSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEM 565

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
            +  + V  T I+ G+AQNG+  +++  F +M    +  D    +++L      T+L  G
Sbjct: 566 PDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDG 625

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFAR 436
           K+IH LIIKS F S     + +I+MYSKCGD+  S + F  +  +  ++ WNSMI  FA+
Sbjct: 626 KEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAK 685

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           +G   +AL L+++M+   ++  +VTFL +L AC+H GL+++G  +  SM++V+ I PR +
Sbjct: 686 NGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVD 745

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HYAC +D++GR G L EA+  I  +P +PD ++W   L AC +H D E G+ AA++L   
Sbjct: 746 HYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEERGEIAAKELVEL 805

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +P + + Y+L++N+Y+ +G W E   A + M+E G  K  G SWI +  +   F+V DK 
Sbjct: 806 EPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGNKTSLFLVQDKN 865

Query: 617 HPQADTIHGVLAELLRLM 634
           H  A  I+ +L  L R+M
Sbjct: 866 HLGALRIYEMLDNLTRMM 883



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 270/537 (50%), Gaps = 48/537 (8%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           PT ST           + +LS +A    F  G  +HA+ ++          + +     +
Sbjct: 198 PTRST----------FASMLSAAANATAFIEGRQVHAAAVR----------HGLDANVFV 237

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG----FGFFKRSL 147
            +SL++ Y KC  + +A+ +FD    ++ V WN M++G +RN E+ +     F + KR  
Sbjct: 238 GSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRN-EYQVEAIQMFLYMKR-- 294

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
            LG  + D+ ++  +L AC   +   + + + C+      +  + V NA +  + K G+ 
Sbjct: 295 -LGL-EADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAI 352

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              + +F  +  ++ ++W A++ GL  N+  EE + +   M+L  + P+ +++ + + AC
Sbjct: 353 DDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINAC 412

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S ++A   G+QIH +  K ++ S+  + S+L+D YSK G VE   ++    +    V   
Sbjct: 413 SNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRN 472

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIK 386
           V++ G  QN  E+EA+ LF ++++ G++      S++L G  G+ +S+ +GKQ+H   +K
Sbjct: 473 VLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSI-IGKQVHCYTLK 531

Query: 387 SDF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKAL 444
           S F   +  V   L+  Y K    ED+ K+   M   +N V W ++++ +A++G  +++L
Sbjct: 532 SGFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSL 591

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYAC 500
             +  M+   V P +VTF S+L ACS +  ++ G E     +KS    ++ +  A     
Sbjct: 592 LSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSA----- 646

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           ++DM  + G +I +    + +  K D+ +W +++   + +G      YA E L L Q
Sbjct: 647 IIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNG------YADEALLLFQ 697



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 229/449 (51%), Gaps = 17/449 (3%)

Query: 104 QMRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQASFTI 161
           ++ +A  L   MP    TV+WN ++SG+ +    +   FG +K     G +   +++F  
Sbjct: 147 RLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPT-RSTFAS 205

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +LSA   +   +  + +H      G +  V VG++LI  Y KCG       VF     +N
Sbjct: 206 MLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKN 265

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+ W A+++GLV+N+   E +++F+ M    +  +  TY+S + AC+ L + C GRQ+  
Sbjct: 266 VVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQC 325

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K  + + L + +A +DM+SK G+++DA  +F      D VS   +LVG   N  +EE
Sbjct: 326 VTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEE 385

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ +   M   G+  D    + V+       +   GKQIH L +K    SN  V + LI+
Sbjct: 386 AIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLID 445

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            YSK GD+E   KV +++   + V  N +IA   ++    +A++L++++  +G++P+  T
Sbjct: 446 FYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFT 505

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVG---RAGLLIEA 514
           F S+L  C+  GL++  +       +VH  + ++    +  +  V +VG   +A +  +A
Sbjct: 506 FSSILSGCT--GLLSSIIG-----KQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDA 558

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDS 543
              +  MP   +++ W A++   + +G S
Sbjct: 559 NKLLIEMPDHKNLVEWTAIVSGYAQNGYS 587



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 211/430 (49%), Gaps = 39/430 (9%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L++ Y +C ++ +A ++F  + + DTV W +M+SG+ R G F      F R  ++G   
Sbjct: 71  ALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMG--- 127

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
                     S+ DR         + C+  +C          AL       G     R +
Sbjct: 128 ----------SSPDR---------VTCVAVVCAL-------TAL-------GRLEDARTL 154

Query: 214 FGEMRV-RNVITWTAVISGLVQNQLYE-EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
              M    + + W AVISG  Q    E E   L+  M    + P   T+ S + A +   
Sbjct: 155 LHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANAT 214

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           A  EGRQ+H    +  L +++ + S+L+++Y+KCG + DA  +F+ + E + V    +L 
Sbjct: 215 AFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLN 274

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G  +N ++ EA+Q+F+ M + G+E D     +VLG      S  LG+Q+  + IK+   +
Sbjct: 275 GLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDA 334

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + FV N  ++M+SK G ++D+  +F+ +  +++VSWN+++     +    +A+ + + M 
Sbjct: 335 SLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMN 394

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
           L+GV P +V+F ++++ACS++     G + +  +   H I       + ++D   + G +
Sbjct: 395 LDGVTPDEVSFATVINACSNIRATETGKQ-IHCLAMKHSICSNHAVGSSLIDFYSKHGDV 453

Query: 512 IEARSFIERM 521
              R  + ++
Sbjct: 454 ESCRKVLAQV 463



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 178/392 (45%), Gaps = 37/392 (9%)

Query: 144 KRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
           +R    G  + DQ      LSAC R    +  K  HC     G         AL+  Y +
Sbjct: 19  RRCSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYAR 78

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           CG     R+VFG + + + + W ++ISG  +   ++E + LF +M     +P+ +T ++ 
Sbjct: 79  CGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAV 138

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           V A + L  L + R +                  L  M +   +V  AW           
Sbjct: 139 VCALTALGRLEDARTL------------------LHRMPAPSSTV--AWN---------- 168

Query: 324 VSMTVILVGFA-QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
                ++ G+A Q+G E E   L+  M   G+    +  +++L      T+   G+Q+H+
Sbjct: 169 ----AVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHA 224

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             ++    +N FV + LIN+Y+KCG + D+I VF     +N V WN+M+    R+    +
Sbjct: 225 AAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVE 284

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           A++++  MK  G+E  + T++S+L AC+H+     G + ++ +T  + +          +
Sbjct: 285 AIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQ-VQCVTIKNCMDASLFVANATL 343

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           DM  + G + +A++    +  K D + W ALL
Sbjct: 344 DMHSKFGAIDDAKTLFNLITYK-DTVSWNALL 374



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 140/311 (45%), Gaps = 48/311 (15%)

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           TAV+   V+ +    G         G + P+     +++ ACS L AL  G+Q H    K
Sbjct: 9   TAVLDAFVRARRCSAG---------GGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEK 59

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             L S     +AL++MY++CG V DA ++F      D V    ++ G+ + G  +EA+ L
Sbjct: 60  RGLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCL 119

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F +M K G    P+ V+ V                                  ++   + 
Sbjct: 120 FTRMEKMGSS--PDRVTCV---------------------------------AVVCALTA 144

Query: 406 CGDLEDSIKVFSRM-APRNSVSWNSMIAAFARH-GNGFKALELYEEMKLEGVEPTDVTFL 463
            G LED+  +  RM AP ++V+WN++I+ +A+  G   +   LY++M+  G+ PT  TF 
Sbjct: 145 LGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFA 204

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           S+L A ++     +G +   +    H +       + ++++  + G + +A   +     
Sbjct: 205 SMLSAAANATAFIEGRQVHAAAVR-HGLDANVFVGSSLINLYAKCGCIGDA-ILVFDCSG 262

Query: 524 KPDVLVWQALL 534
           + +V++W A+L
Sbjct: 263 EKNVVMWNAML 273


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/539 (33%), Positives = 298/539 (55%), Gaps = 6/539 (1%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A ++FD    R+T  WNTM+ G+++N         F + +E   + LD  +F   L+A  
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAIS 333

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           + +   + + +H  +       +V + NA+I  Y +CGS  +  KVF  M  R+V+TW  
Sbjct: 334 QLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNT 393

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           ++S  VQN L +EGL L  +M       +S+T  + +   S L++   G+Q H  L +  
Sbjct: 394 MVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG 453

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--ELDGVSMTVILVGFAQNGFEEEAMQL 345
           +Q +  ++  L+DMY+K G +  A Q+FE     + D  +   ++ G+ QNG  EE   +
Sbjct: 454 IQFE-GMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAV 512

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           F KM++  +  +   ++++L       ++GLGKQIH   I+     N FV   L++MYSK
Sbjct: 513 FRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSK 572

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
            G +  +  VF+    +NSV++ +MI ++ +HG G +AL L+  M   G++P  VTF+++
Sbjct: 573 SGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAI 632

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L ACS+ GLV++G+   +SM   ++I P +EHY CV DM+GR G + EA  F++ +  + 
Sbjct: 633 LSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEG 692

Query: 526 DVL-VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAK 582
           +   +W +LLGAC IHG+ E+GK  A KL   +  S     ++L++NIY+  G W    +
Sbjct: 693 NTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDR 752

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
             K M++ G+ KE G SW+E+   V+ F+  D  HPQ   I+ +L +L   M D GY P
Sbjct: 753 VRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKP 811



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 156/608 (25%), Positives = 277/608 (45%), Gaps = 74/608 (12%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            D+Y   S  L   A+     LG +LH   +++          +  ++ +++NSLL+ Y 
Sbjct: 102 FDSYT-FSSTLKACAQARSLKLGKALHCHVLRS----------HFGSSRIVYNSLLNMYS 150

Query: 101 ----------------KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
                            CD +R   ++FD M  R+ V+WNTM+S +++       F  F+
Sbjct: 151 TCLTEVPYLGTAYDFNNCDLVR---RVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFR 207

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYF 202
             + +G  +    SF  +  A  R      + +++ LV   G  Y ++  V ++ I  Y 
Sbjct: 208 TMMRMGI-RPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYA 266

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYL 261
           + G     R++F     RN   W  +I G VQN    E + LFV+ M       + +T+L
Sbjct: 267 ELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFL 326

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ A S LQ L  GRQ+H  + K +    + I +A++ MYS+CGS+  ++++F    E 
Sbjct: 327 SALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLER 386

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D V+   ++  F QNG ++E + L  +M K G  +D   ++A+L +     S  +GKQ H
Sbjct: 387 DVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAH 446

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN 439
           + +I+        ++  LI+MY+K G +  + ++F + +   R+  +WN+MIA + ++G 
Sbjct: 447 AYLIRHGIQFEG-MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGL 505

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME--------FLKSMTEV--- 488
             +   ++ +M  + V P  VT  S+L AC+ +G +  G +        FL     V   
Sbjct: 506 SEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTA 565

Query: 489 -------------------HRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKPD 526
                                +   +  Y  ++   G+ G+   A S    M    +KPD
Sbjct: 566 LLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPD 625

Query: 527 VLVWQALLGACSIHGDSEMGK---YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            + + A+L ACS  G  + G     + E+ +  QP S   Y  +A++    GR  E  + 
Sbjct: 626 SVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSE-HYCCVADMLGRVGRVXEAYEF 684

Query: 584 IKRMKEMG 591
           +K + E G
Sbjct: 685 VKGLGEEG 692



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 231/509 (45%), Gaps = 42/509 (8%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           S LS   +      A+ LFD +P   TV WNT++ GF+ N        F+ R       +
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC--------- 204
            D  +F+  L AC ++    + K +HC V    +     V N+L+  Y  C         
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGT 161

Query: 205 ----GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
                +    R+VF  MR RNV+ W  +IS  V+ +   E  K+F  M    I P  +++
Sbjct: 162 AYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSF 221

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           ++   A   +        ++G++ KL      D  + S+ + MY++ G V+ A +IF+  
Sbjct: 222 VNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCC 281

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLG 377
            E +      ++ G+ QN    EA+ LFV+++++    +D     + L        L LG
Sbjct: 282 LERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLG 341

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +Q+H+ I+KS       + N +I MYS+CG +  S KVFS M  R+ V+WN+M++AF ++
Sbjct: 342 RQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSMT 486
           G   + L L  EM+ +G     VT  +LL   S           H  L+  G++F + M 
Sbjct: 402 GLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQF-EGMD 460

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV-KPDVLVWQALLGACSIHGDSEM 545
                         ++DM  ++GL+  A+   E+      D   W A++   + +G SE 
Sbjct: 461 ------------GYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEE 508

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           G +A  +  + Q   P    L + + +C+
Sbjct: 509 G-FAVFRKMIEQNVRPNAVTLASILPACN 536



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/332 (31%), Positives = 168/332 (50%), Gaps = 15/332 (4%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           + +  LD+   +S L +IS  +    LG  LHA  +K+                VI N++
Sbjct: 315 SEQFXLDDVTFLSALTAISQLQ-WLDLGRQLHAYILKSSTILQ----------VVILNAI 363

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           +  Y +C  +  + K+F +M  RD V+WNTMVS F++NG  D G        + GF  +D
Sbjct: 364 IVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGF-MVD 422

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
             + T +LS         + K  H  +   G + E   G  LI  Y K G  ++ +++F 
Sbjct: 423 SVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDG-YLIDMYAKSGLITTAQQLFE 481

Query: 216 EMRV--RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           +     R+  TW A+I+G  QN L EEG  +F KM    + PN++T  S + AC+ +  +
Sbjct: 482 KNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G+QIHG   +  L  ++ + +AL+DMYSK G++  A  +F    E + V+ T +++ +
Sbjct: 542 GLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSY 601

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
            Q+G  E A+ LF  M+ +GI+ D     A+L
Sbjct: 602 GQHGMGERALSLFHAMLGSGIKPDSVTFVAIL 633


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 300/552 (54%), Gaps = 12/552 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S+HAS IK     DN          V+ + L+  Y +C     A ++F  +   D V 
Sbjct: 271 GQSVHASVIKRGLETDN----------VLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVH 320

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
            + M+S F R+         F +   +G  + +   F  I     R+  + + + +H  +
Sbjct: 321 CSAMISCFDRHDMAWEALDLFVKMSGMGV-KPNHYIFVGIAGVASRTGDANLCRSVHAYI 379

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G+     VG+A++  Y K G+       F  +   +  +W  ++S        E+GL
Sbjct: 380 VKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGL 439

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           ++F +M     + N  TY+S +  C+ L  L  G Q+H  + K  LQ+D  +   L+DMY
Sbjct: 440 RIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMY 499

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++ G    A  +FE  +E D  S TVI+ G+A+    E+ ++ F  M++  I      ++
Sbjct: 500 AQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLA 559

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
             L V     SLG G Q+HS  IKS + S+  V+  L++MY KCG++ D+  +F     R
Sbjct: 560 VSLSVCSDMASLGSGLQLHSWAIKSGWNSS-VVSGALVDMYVKCGNIADAEMLFHESETR 618

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V+WN++I  +++HG+G+KAL+ +++M  EG  P  +TF+ +L ACSH GL+N+G ++ 
Sbjct: 619 DQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYF 678

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           KS++ ++ I+P  EHYAC+VD++ +AG L+EA S I +MP+ PD  +W+ +LGAC IH +
Sbjct: 679 KSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRN 738

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            E+ + AAE+LF  +P   +  IL++NIY+  GRW +  +    + + GV KE G SWIE
Sbjct: 739 IEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIE 798

Query: 603 IEKQVHSFVVDD 614
           I  Q+H F+  D
Sbjct: 799 INGQIHMFLSQD 810



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 246/527 (46%), Gaps = 44/527 (8%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  +++    D          T + +SLL+ Y KC ++ +A ++FD MP RD V+
Sbjct: 69  GQELHARLLRSALHPD----------TFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVA 118

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHC 180
           W  M+S     G+ D     F R  + G   +    FT+  +L AC     S  +  +H 
Sbjct: 119 WTAMISAHTAAGDSDQALDMFARMNQEG---IAPNGFTLASVLKACSGGSHSKFTHQVHG 175

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
            V      ++  VG++L+ +Y  CG   +   V   +  R+ ++W A+++G  ++  Y  
Sbjct: 176 QVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRR 235

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            + +  K+       +  T  + +  C  L     G+ +H  + K  L++D  + S L++
Sbjct: 236 VMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVE 295

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MYS+C S E+A+++F   +E D V  + ++  F ++    EA+ LFVKM   G++ +  +
Sbjct: 296 MYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYI 355

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
              + GV        L + +H+ I+KS F     V + ++NMY K G ++D+   F  + 
Sbjct: 356 FVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIH 415

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS---------- 470
             ++ SWN++++AF    N  + L ++++M  EG      T++S+L  C+          
Sbjct: 416 EPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQ 475

Query: 471 -HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
            H  ++  G   L++ T+V R+         +VDM  ++G    A    E++  + D   
Sbjct: 476 VHACILKSG---LQNDTDVSRM---------LVDMYAQSGCFTSACLVFEQLKER-DAFS 522

Query: 530 WQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
           W  ++   S +  +E  +   E  +  L +   P+   L  ++  CS
Sbjct: 523 WTVIM---SGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCS 566



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 141/281 (50%), Gaps = 2/281 (0%)

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + +++  C+  + L  G+++H  L + AL  D  +  +L++MY KCG + DA ++F+   
Sbjct: 53  HAAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMP 112

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
             D V+ T ++      G  ++A+ +F +M + GI  +   +++VL      +      Q
Sbjct: 113 HRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQ 172

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H  ++K +   +P+V + L+  Y+ CG+L+ +  V   +  R+ VSWN+++  +ARHG+
Sbjct: 173 VHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGD 232

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             + + + E++   G E +  T  ++L  C  +GL   G     S+ +   +       +
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIK-RGLETDNVLNS 291

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           C+V+M  R     EA     R+  +PDV+   A++     H
Sbjct: 292 CLVEMYSRCLSAEEAYEVFIRID-EPDVVHCSAMISCFDRH 331



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 15/218 (6%)

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +A L    V  +L  G+++H+ +++S    + F+ + L+NMY KCG L D+ +VF  M  
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ V+W +MI+A    G+  +AL+++  M  EG+ P   T  S+L ACS       G   
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACS-------GGSH 166

Query: 482 LKSMTEVH----RISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            K   +VH    +++   + Y  + +V+     G L  A + +  +P + DV  W ALL 
Sbjct: 167 SKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDV-SWNALLN 225

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
             + HGD        EKL +A  D  + Y L   +  C
Sbjct: 226 GYARHGDYRRVMIIIEKL-VASGDEISKYTLPTVLKCC 262


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/584 (32%), Positives = 309/584 (52%), Gaps = 42/584 (7%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y   + + ++++LF+ +     ++W +++  +  +G      G F   L  G Y  D  
Sbjct: 49  IYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYP-DHN 107

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG------------ 205
            F  +L +C       + + +H  +   G + ++  GNAL+  Y K              
Sbjct: 108 VFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGA 167

Query: 206 --------------------SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
                               S  S RK+F  M  +++++W  +I+G  +N LYEE L++ 
Sbjct: 168 GEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMI 227

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQA-LCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
            +M    + P+S T LSSV+        +  G++IHG   +  L +D+ + S+L+DMY+K
Sbjct: 228 REMGGANLKPDSFT-LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           C  V D+ ++F    E DG+S   I+ G  QNG  +E ++ F +M+ A I+      S++
Sbjct: 287 CTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           +      T+L LGKQ+H  I ++ F  N F+ + L++MY+KCG++  + ++F RM  R+ 
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           VSW +MI   A HG    A+EL+E+M+ EG++       ++L ACSH GLV++  ++  S
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNS 459

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           MT    I+P  EHYA V D++GRAG L EA  FI  M + P   +W  LL AC +H + +
Sbjct: 460 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNID 519

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           M +  A ++    P++   YIL+ANIYS + RWKE AK    M+ +G+ K    SWIE++
Sbjct: 520 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 579

Query: 605 KQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            +V++F+  D+ HP  + I   +  L+ LM  EGYVP+   + H
Sbjct: 580 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHH 623



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 95/158 (60%), Gaps = 1/158 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y KC ++ ++ ++F  +  RD +SWN++++G ++NG FD G  FF++ L + 
Sbjct: 276 VASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQML-MA 334

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             +    SF+ I+ AC       + K +H  +   G++E + + ++L+  Y KCG+  + 
Sbjct: 335 KIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTA 394

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           +++F  MR+R++++WTA+I G   +    + ++LF +M
Sbjct: 395 KQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 18/112 (16%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG  LH     T   FD +N++       I +SL+  Y KC  +R A ++FD M +RD
Sbjct: 356 LHLGKQLHGYI--TRNGFD-ENIF-------IASSLVDMYAKCGNIRTAKQIFDRMRLRD 405

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
            VSW  M+ G   +G+          ++EL F Q++      +L+AC    L
Sbjct: 406 MVSWTAMIMGCALHGQ-------APDAIEL-FEQMETEGIKAVLTACSHGGL 449


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 192/591 (32%), Positives = 298/591 (50%), Gaps = 51/591 (8%)

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           L+  +K  ++ +A+ LFD MP ++ V+W +++SG  RNG  +     F   +E G    D
Sbjct: 55  LNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPND 114

Query: 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
            A    +++  D   L    + +H L    G+  +  +G+ LI  Y +CGS  + ++VF 
Sbjct: 115 FACNAALVACADLGALR-AGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFD 173

Query: 216 EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS------- 268
            M   +V+ +T++IS   +N  +E   +  ++M    + PN  T  + + AC        
Sbjct: 174 RMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQI 233

Query: 269 --------GLQ--------ALCE---------------------------GRQIHGILWK 285
                   GL+        AL +                           GRQ+H    K
Sbjct: 234 HGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACGSIGLGRQLHCSAIK 293

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
             L +D+ + +AL+ MY + G VE+   +    E  D VS T  +    QNGF E+A+ L
Sbjct: 294 HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIAL 353

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
             +M   G   +    S+VL       SL  G Q H L +K    S     N LINMYSK
Sbjct: 354 LCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSK 413

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +  +   F  M   +  SWNS+I   A+HG+  KALE++ +M+  G++P D TFL +
Sbjct: 414 CGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGV 473

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L  C+H G+V +G  F + M + +  +P   HYAC++DM+GR G   EA   I  MP +P
Sbjct: 474 LMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEP 533

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           D L+W+ LL +C +H + ++GK AA++L        A Y+LM+NIY+  G W++  K  +
Sbjct: 534 DALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRR 593

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           RM E GV K+ G SWIEI  +VH+F   D  HP +D+I+ +L EL+ +M D
Sbjct: 594 RMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 644



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 192/416 (46%), Gaps = 66/416 (15%)

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
           C    +V +    +    K G  +    +F  M  +NV+ WT+V+SG  +N   E  L +
Sbjct: 42  CAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAM 101

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F  M    + PN     ++++AC+ L AL  G Q+H +  +     D  I S L++MYS+
Sbjct: 102 FADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSR 161

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE--------- 355
           CGS+  A ++F+  +  D V  T ++  F +NG  E A +  ++M+K G++         
Sbjct: 162 CGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTI 221

Query: 356 ------------------------------------------IDPN--MVSAVLGVFGVD 371
                                                     +DPN   +S VLG  G  
Sbjct: 222 LTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIVLGACG-- 279

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            S+GLG+Q+H   IK D  ++  V+N L++MY + G +E+   + +++   + VSW + I
Sbjct: 280 -SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAI 338

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTE 487
           +A  ++G G KA+ L  +M  EG  P    F S+L +C+ V  +++GM+F    LK   +
Sbjct: 339 SANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCD 398

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
               +  A     +++M  + G +  AR   + M    DV  W +L+   + HGD+
Sbjct: 399 SEICTGNA-----LINMYSKCGQMGSARLAFDVMHTH-DVTSWNSLIHGHAQHGDA 448



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 181/404 (44%), Gaps = 59/404 (14%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I + L+  Y +C  +  A ++FD M   D V + +++S F RNGEF++      + L+ G
Sbjct: 151 IGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQG 210

Query: 151 FYQLDQASFTIILSACDR---------------------------------------SEL 171
             + ++ + T IL+AC R                                       +E 
Sbjct: 211 L-KPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNEGVDPNEF 269

Query: 172 SL-----------VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           +L           + + +HC         ++ V NAL++ Y + G       +  ++   
Sbjct: 270 ALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENP 329

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           ++++WT  IS   QN   E+ + L  +MH     PN   + S + +C+ + +L +G Q H
Sbjct: 330 DLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFH 389

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            +  KL   S++C  +AL++MYSKCG +  A   F+     D  S   ++ G AQ+G   
Sbjct: 390 CLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDAN 449

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKS-DFTSNPFVN 396
           +A+++F KM   GI+ D    S  LGV       G+   G+    L+I    FT  P   
Sbjct: 450 KALEVFSKMRSNGIKPDD---STFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHY 506

Query: 397 NGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
             +I+M  + G  ++++++ + M    +++ W +++A+   H N
Sbjct: 507 ACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 550



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 154/363 (42%), Gaps = 47/363 (12%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           G   LG  LH S IK          +++     + N+LLS Y +   +     + + +  
Sbjct: 279 GSIGLGRQLHCSAIK----------HDLITDIRVSNALLSMYGRTGLVEELEAMLNKIEN 328

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
            D VSW T +S   +NG  +       +    GF   +  +F+ +LS+C           
Sbjct: 329 PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTP-NGYAFSSVLSSCADVASLDQGMQ 387

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
            HCL    G + E+  GNALI  Y KCG   S R  F  M   +V +W ++I G  Q+  
Sbjct: 388 FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGD 447

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             + L++F KM    I P+  T+L  +M C+    + EG     + ++L           
Sbjct: 448 ANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGE----LFFRL----------- 492

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++D YS             F       +  + ++G  +NG  +EA+++   M     E D
Sbjct: 493 MIDQYS-------------FTPAPSHYACMIDMLG--RNGRFDEALRMINDMP---FEPD 534

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
             +   +L    +  +L +GK     +++ SD  S  +V   + N+Y+  G+ ED+ KV 
Sbjct: 535 ALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVL--MSNIYAMHGEWEDARKVR 592

Query: 417 SRM 419
            RM
Sbjct: 593 RRM 595


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 203/650 (31%), Positives = 330/650 (50%), Gaps = 63/650 (9%)

Query: 52  SISAKEGHFHLGPSLHASFIKTFEPFDN--QNVYNVPNATVI-------------WNSLL 96
           +++   G   LG SL + F      F +   +  N PN+ V+              N LL
Sbjct: 269 TVATVGGLLFLGFSLSSYFYPPLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNHLL 328

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           + Y K   +  A K+F+++P  D  SW  ++SGF R G      G F +  + G    +Q
Sbjct: 329 NLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCP-NQ 387

Query: 157 ASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG 215
            + +I+L +C  +   S + K IH  +   G + +  + N+++  Y KC       K+FG
Sbjct: 388 FTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFG 447

Query: 216 EMRVRNVITWT-------------------------------AVISGLVQNQLYEEGLKL 244
            M  ++ ++W                                 +I GL++N      L+L
Sbjct: 448 LMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALEL 507

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
             KM       N LT+  +++  S L  L  G+QIH  + K+ +  D  + ++L+DMY K
Sbjct: 508 LYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCK 567

Query: 305 CGSVEDAWQIFEF---------AEE------LDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           CG +E A  IF+          +EE      ++ VS + ++ G+ QNG  E+A++ F  M
Sbjct: 568 CGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFM 627

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           + + +E+D   +++V+        L LG+Q+H  I K     + F+ + +I+MY KCG L
Sbjct: 628 ICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSL 687

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            D+  +F++   RN V W SMI+  A HG G +A+ L+E M  EG+ P +V+F+ +L AC
Sbjct: 688 NDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTAC 747

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           SH GL+ +G ++ + M EV+ I P AEH+ C+VD+ GRAG L E + FI    +     V
Sbjct: 748 SHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSV 807

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589
           W++ L +C +H + EMG +  +KL   +P    PYIL ++I +   RW+E AK    M++
Sbjct: 808 WRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQ 867

Query: 590 MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            GV K    SWI+++ QVHSFV+ D+ HPQ   I+  L EL+  + + GY
Sbjct: 868 RGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGY 917


>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
           mitochondrial-like [Vitis vinifera]
          Length = 665

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 309/580 (53%), Gaps = 24/580 (4%)

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           ++ FE   ++N+       + WN  L  +++  ++  A  +FD+MP RD VSWNTM+SG+
Sbjct: 92  LRVFEDIIDKNL-------ISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGY 144

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFT------IILSACDRSELSLVSKMIHCLVYL 184
           +  G FD  F FF    + G   +  + FT       + SAC         K IH  +  
Sbjct: 145 VSFGLFDDAFRFFSEMQKAG---IRPSGFTYSTLLSFVSSACR-------GKQIHASMIR 194

Query: 185 CGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
            G +   V VGN+LI  Y K G       VF  M   ++ +W ++I    ++      L+
Sbjct: 195 NGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALR 254

Query: 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303
            FV M     +P+  T  + +  CS LQ L +G QI  +  ++   S+  + SA +D++S
Sbjct: 255 QFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFS 314

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA 363
           KC  +ED+ ++FE   + D V    ++  +A +GF E A+QLFV  ++  +      +S 
Sbjct: 315 KCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSI 374

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
           VL    +   +  G QIHSL++KS   S+  V + L+ MY+K G ++ ++K F+++  R+
Sbjct: 375 VLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARD 434

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            +SWN+MI   A +G   KALE+++E+ + G  P ++T   +L AC+  GLV++G+    
Sbjct: 435 LISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFS 494

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
           SM + + + P  EHYAC+VDM+ R G L EA   +E MP +P  L+W +LL AC I+GD 
Sbjct: 495 SMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDL 554

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
              +  AE++   +P S  PY+++A  Y   GRW+   +  + MKE GV K  G SWI I
Sbjct: 555 RFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGI 614

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
           +  V  F  +  +H     I+ +L  L++ + D+GY   +
Sbjct: 615 KNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYASQQ 654



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 38/322 (11%)

Query: 256 NSLTYLSSVMA-CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
            SL+Y S+++  C  L++L   + +H  L K+   +   + +  +D+YS+ G+  D+ ++
Sbjct: 35  TSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRV 94

Query: 315 FE-------------------FAE------------ELDGVSMTVILVGFAQNGFEEEAM 343
           FE                   F E            + D VS   ++ G+   G  ++A 
Sbjct: 95  FEDIIDKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAF 154

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT-SNPFVNNGLINM 402
           + F +M KAGI       S +L      +S   GKQIH+ +I++    SN  V N LI M
Sbjct: 155 RFFSEMQKAGIRPSGFTYSTLLSFV---SSACRGKQIHASMIRNGVDLSNVVVGNSLIGM 211

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y K G ++ +  VF  M   +  SWNS+I +  + G    AL  +  M+  G  P   T 
Sbjct: 212 YGKFGVVDYAFGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTV 271

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
            +++  CS++  + KG +       V  +S      A  +D+  +   L ++    E + 
Sbjct: 272 STVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSAS-IDLFSKCNRLEDSVRVFEEI- 329

Query: 523 VKPDVLVWQALLGACSIHGDSE 544
            + D ++  A++ + + HG  E
Sbjct: 330 YQWDSVLCNAMISSYAWHGFGE 351


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 312/587 (53%), Gaps = 16/587 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  L+   +K      G  LHA  IKT    D           ++ N +L+ Y KC ++R
Sbjct: 6   VGSLIHQCSKTKALRQGLPLHAIAIKTATRSD----------VIVSNHILNLYAKCRKLR 55

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD+M  R+ VSW+ M+SG+ + GE     G F +   L     ++  +  ++SAC
Sbjct: 56  EARQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSK---LNIVP-NEYVYASVISAC 111

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
              +  +  K IH      G +    V NALIT Y KCG  S     + E    N + + 
Sbjct: 112 ASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYN 171

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           A+I+G V+NQ  ++G ++   M+     P+  T++  +  C+    L  G  +H    KL
Sbjct: 172 ALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKL 231

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L S   I + ++ MYSK   +E+A + F   EE D +S    +   +     E+A++ F
Sbjct: 232 KLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAF 291

Query: 347 VKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            +M+ +  +  D    ++ L       S+  GKQIH  +I++    +    N LINMY+K
Sbjct: 292 KEMLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAK 351

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CG +  +  +FS+M  +N VSWN+MIA F  HG G KA EL+ +MK  GV+P  VTF+ L
Sbjct: 352 CGCIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGL 411

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525
           L A +H GLV++G+ +  SM E + ISP  EH++C++D++GRAG L EA+ ++++ P   
Sbjct: 412 LTASNHAGLVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGH 471

Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
           D +V  +LL AC +HGD + GK  A +L   QP + +PY+L++N+Y+    W   A+A K
Sbjct: 472 DTVVLGSLLSACRLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWK 531

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
            +K  G+ KE G S IE+      F V D  H + + I  +L ++LR
Sbjct: 532 LLKGSGLKKEPGHSLIEVNGTFEKFTVVDFSHSRIEEIMDML-KILR 577



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 70/120 (58%), Gaps = 4/120 (3%)

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           P +V +++       +L  G  +H++ IK+   S+  V+N ++N+Y+KC  L ++ +VF 
Sbjct: 3   PELVGSLIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFD 62

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV-GLVN 476
            M+ RN VSW++MI+ + + G    AL L+ ++    + P +  + S++ AC+ + GLV 
Sbjct: 63  EMSERNLVSWSAMISGYEQIGEPISALGLFSKLN---IVPNEYVYASVISACASLKGLVQ 119


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 303/562 (53%), Gaps = 6/562 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ NSL+  Y K   +  A +LF  M  +DTV++N++++G+   G  +     F   LEL
Sbjct: 176 MVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF---LEL 232

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
               +  + FT   +LSA    + +   + +H  V    +   V VGNAL+  Y K    
Sbjct: 233 HNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQV 292

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               K+F EM   + I++  VI+    N  ++E   LF K+     +     + + +   
Sbjct: 293 DEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIA 352

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +    L  GRQIH     +    +  +E+AL+DMY+KC   ++A +IF+       V  T
Sbjct: 353 TSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWT 412

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  + Q G  EE + +F  M + G+  D    +++L       S+ LG+Q+HSL+I+S
Sbjct: 413 AMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS 472

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F SN +  + L++ Y+KCG + D+IK F  M  RNSVSWN++I+A+A++GN    L  +
Sbjct: 473 GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSF 532

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           ++M   G +P  V+FLS+L ACSH G V + +    SMT+++ ++P+ EHY  +VD++ R
Sbjct: 533 QQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCR 592

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYIL 566
            G   EA   +  MP +P  ++W ++L +C IH + E+ K AA++LF +      APYI 
Sbjct: 593 NGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYIN 652

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           M+NIY+ +G+W   AK  K M++ GV K    SW+EI+ Q H F  +DK HP+   I   
Sbjct: 653 MSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRK 712

Query: 627 LAELLRLMIDEGYVPNKRFILH 648
           +  L + M  +GY P+    LH
Sbjct: 713 INALSKEMEKKGYKPDTTCALH 734



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 139/535 (25%), Positives = 261/535 (48%), Gaps = 36/535 (6%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           LNSN      L+   I K   +P +  S   ++N+++   L+       H H        
Sbjct: 24  LNSN-----HLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLV-------HAH-------- 63

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
                + FD     N    T+  N ++S +LK  ++  A +LFD M  R  VSW  ++ G
Sbjct: 64  -----QVFDQMPAKN----TISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGG 114

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           +L++ +    F  +   +  G  + D  +   +LS     E   V   IH  V   GYE 
Sbjct: 115 YLQSNQSKEAFRLYA-DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEY 173

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
            + V N+L+ +Y K        ++F  M  ++ +T+ ++++G     L EE ++LF+++H
Sbjct: 174 NLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH 233

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
              I P+  T+ + + A  GL     G+Q+HG + K     ++ + +AL+D YSK   V+
Sbjct: 234 NSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD 293

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
           +  ++F    ELDG+S  V++  +A NG  +E+  LF K+     +      + +L +  
Sbjct: 294 EVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIAT 353

Query: 370 VDTSLGLGKQIH--SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
              +L +G+QIH  ++ + ++F S   V N L++MY+KC   +++ K+F  +A +++V W
Sbjct: 354 SSLNLRMGRQIHCQAITVGANFESR--VENALVDMYAKCNGDKEAQKIFDNIACKSTVPW 411

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +MI+A+ + G   + + ++ +M+  GV     TF S+L AC+++  ++ G + L S+  
Sbjct: 412 TAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQ-LHSLLI 470

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
                      + ++D   + G + +A      MP +  V  W AL+ A + +G+
Sbjct: 471 RSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV-SWNALISAYAQNGN 524



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 111/259 (42%), Gaps = 32/259 (12%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           SL     I + I+K+ F  N   +N  +N + + GDL  + +VF +M  +N++S N MI+
Sbjct: 23  SLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMIS 82

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
              + G   KA EL++ M    VE T V++  L+         N+  E  +   ++ R  
Sbjct: 83  GHLKFGKLSKARELFDGM----VERTAVSWTILIGGYLQ---SNQSKEAFRLYADMRRGG 135

Query: 493 PRAEHYACVVDMVG-----RAGLLIEARSFIERMPVKPDVLVWQALLGA-CSIHGDSEMG 546
              ++   V  + G        ++++  + + ++  + +++V  +L+ A C  H      
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH-----C 190

Query: 547 KYAAEKLF--LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE--------- 595
            Y A +LF  +   D+     LM   YS  G  +E  +    +   G+            
Sbjct: 191 LYLASQLFKHMLNKDTVTFNSLMTG-YSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249

Query: 596 --TGISWIEIEKQVHSFVV 612
              G+   +  +QVH FV+
Sbjct: 250 AAVGLDDTKFGQQVHGFVL 268


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 186/572 (32%), Positives = 318/572 (55%), Gaps = 32/572 (5%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A+ LF+ +   +   WN+M+ G   +    +   FF R +  G  + +  +F  +L +C 
Sbjct: 82  AISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGV-EPNSYTFPFLLKSCA 140

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           +   +   K IH  V   G+  +V +  +LI  Y + G  ++ + VF +   R+ I++TA
Sbjct: 141 KLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTA 200

Query: 228 VISGLV-------QNQLYE------------------------EGLKLFVKMHLGLINPN 256
           +I+G           QL++                        E L LF  M    + PN
Sbjct: 201 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPN 260

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T +S + AC+   AL  G  +   +    L S+L + +AL+DMYSKCG ++ A ++F+
Sbjct: 261 ESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFD 320

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              E D +S  V++ G+      +EA+ LF +M+ +G+E       ++L       ++ L
Sbjct: 321 DMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDL 380

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GK IH+ I K+  + +  ++  LI++Y+KCG++  + +VF  M  ++  SWN+MI   A 
Sbjct: 381 GKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAM 440

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496
           HG   KA EL+ +M  +G+EP ++TF+ +L AC H GLV+ G +F  SM + ++ISP+++
Sbjct: 441 HGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQ 500

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
           HY C++D++GRAGL  EA S ++ M VKPD  +W +LLGAC  HG  E+G+  AE+LF  
Sbjct: 501 HYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFEL 560

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +PD+P  Y+L++NIY+ +G+W + A+   R+ + G+ K  G + IE++  VH F+V DK+
Sbjct: 561 EPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKV 620

Query: 617 HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           HPQ++ I+ +L E+   +   G+V +   +L+
Sbjct: 621 HPQSEDIYRMLEEVDEQLKVFGFVADTSEVLY 652



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 198/402 (49%), Gaps = 35/402 (8%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALI--TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           K IH  +   G    +   + LI  ++  + G  S    +F  +   N+  W ++I GL 
Sbjct: 46  KQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
            +      L  FV+M    + PNS T+   + +C+ L +  EG+QIH  + KL   SD+ 
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVF 165

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA------------------- 334
           I ++L++MY++ G + +A  +F+ +   D +S T ++ G+A                   
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 335 ------------QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
                       Q G  +EA+ LF  M KA +  + + + +VL       +L LG  + S
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRS 285

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            I      SN  + N LI+MYSKCGDL+ + ++F  M  R+ +SWN MI  +    +  +
Sbjct: 286 WIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKE 345

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL L+ EM   GVEPT++TFLS+L +C+H+G ++ G +++ +    +  S        ++
Sbjct: 346 ALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINKNFNSVSTSLSTSLI 404

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           D+  + G ++ AR   + M +K  +  W A++   ++HG ++
Sbjct: 405 DLYAKCGNIVAARQVFDGMKIK-SLASWNAMICGLAMHGQAD 445



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 206/417 (49%), Gaps = 20/417 (4%)

Query: 66  LHASFIKTF----EPFDNQNVYNVPN--ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           +H S I  +    E  + Q V++  N    + + +L++ Y     M  A +LFD+MP++D
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            VSWN M++G+ + G        F+  +       ++++   +LSAC +S    +   + 
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFE-DMRKANVPPNESTIVSVLSACAQSNALDLGNSMR 284

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             +   G    + + NALI  Y KCG   + R++F +M  R+VI+W  +I G      Y+
Sbjct: 285 SWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK 344

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E L LF +M    + P  +T+LS + +C+ L A+  G+ IH  + K        + ++L+
Sbjct: 345 EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLI 404

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           D+Y+KCG++  A Q+F+  +     S   ++ G A +G  ++A +LF KM   GIE  PN
Sbjct: 405 DLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE--PN 462

Query: 360 MVSAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIK 414
            ++ V G+       G   LG+Q  S +++ D+  +P   +   +I++  + G  E++  
Sbjct: 463 EITFV-GILSACKHAGLVDLGQQFFSSMVQ-DYKISPKSQHYGCMIDLLGRAGLFEEAES 520

Query: 415 VFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEE--MKLEGVEPTDVTFLSLLHA 468
           +   M  + +   W S++ A   HG   +  EL  E   +LE   P     LS ++A
Sbjct: 521 LLQNMEVKPDGAIWGSLLGACRDHGR-VELGELVAERLFELEPDNPGAYVLLSNIYA 576


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 194/593 (32%), Positives = 307/593 (51%), Gaps = 15/593 (2%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
            LG + HA  ++   P        +P    I   L++ Y K D    A       P    
Sbjct: 30  RLGRAAHARALRLLAP-------ALP--PFICAHLVNLYSKLDLPGAAAAALAADPSPTV 80

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD---QASFTIILSACDRSELSLVSKM 177
           VS+   +SG  ++         F   L LG    D    ++F    SA  R   + V   
Sbjct: 81  VSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRCAAA-VGPQ 139

Query: 178 IHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           +H L    GY  ++  V  A +  YFK G  +  R++F EM  RNV+ W AV++  V + 
Sbjct: 140 VHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAVLDG 199

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
              E ++ +  +      PN ++  +   AC+G+  L  G Q HG + K     D+ + +
Sbjct: 200 RPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGEQFHGFVAKCGFDKDVSVSN 259

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +++D Y KC  +  A  +F+     + VS   ++V +AQNG EEEA  +++   +AG E 
Sbjct: 260 SMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLGARRAGEEP 319

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
              MVS++L        L LG+ +H++  +S   +N FV + L++MY KCG ++D+ +VF
Sbjct: 320 TDFMVSSLLTTCAGLLGLDLGRALHAVAARSCIDANIFVASALVDMYGKCGGIQDAEQVF 379

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLV 475
             M  RN V+WN+MI  +A  G+ + AL +++EM +     P  +T +++L ACS  GL 
Sbjct: 380 FEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRETAPNYITIVNVLTACSRGGLT 439

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +G E  ++M +   I PR EHYACVVD++GRAG+  +A   I+ MP++P + VW ALLG
Sbjct: 440 KEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPMRPSISVWGALLG 499

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
            C +HG +E+G+ AAEKLF   P     ++L++N+ + +GRW E     K MK +G+ K+
Sbjct: 500 GCKMHGKTELGRVAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKD 559

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            G SWI  +  VH F   D  H     I  +LA+L   M   GY+P+ ++ L+
Sbjct: 560 PGRSWITWKNIVHVFQAKDTTHEMNSEIQALLAKLKGQMQGAGYMPDTQYALY 612


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 316/583 (54%), Gaps = 41/583 (7%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  AV +F+     + + WNTM+ G   + +       + R +  G +  +  +F  +
Sbjct: 31  DGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXG-HVPNAYTFPFL 89

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYE-------------------------------EEV 191
           L +C +S+     + IH  V   G E                                +V
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G   S RKVF  +  R+V++W A+I+G V+N  YEE L+LF +M   
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILW-KLALQSDLCIESALMDMYSKCGSVED 310
            + P+  T +S + AC+   ++  GR+IH ++       S L I +A + +YSKCG VE 
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +FE     D VS   ++ G+      +EA+ LF +M+++G    PN V+ +L V   
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGE--SPNDVT-MLSVLPA 326

Query: 371 DTSLG---LGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
              LG   +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF+ M  ++  
Sbjct: 327 CAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLS 386

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           SWN+MI  FA HG    A +L+  M+  G+EP D+T + LL ACSH GL++ G    KS+
Sbjct: 387 SWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSV 446

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
           T+ + I+P+ EHY C++D++G AGL  EA   I  MP++PD ++W +LL AC +HG+ E+
Sbjct: 447 TQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLEL 506

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
            +  A+KL   +P++   Y+L++NIY+ +GRW++ A+  + +   G+ K  G S IEI+ 
Sbjct: 507 AESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDS 566

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            VH F++ DK+HPQ+  I+ +L E+  L+ + G+VP+   +L 
Sbjct: 567 VVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQ 609


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 178/554 (32%), Positives = 305/554 (55%), Gaps = 3/554 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLE 148
           ++ N+L++ Y K   + +   LF+ +  +D +SW ++++GF + G F+M     F++ + 
Sbjct: 188 IVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQG-FEMEALQVFRKMIV 246

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G +  ++  F     AC         + IH L      + ++ VG +L   Y +  +  
Sbjct: 247 EGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLD 306

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S R  F  +   ++++W ++++      L  E L LF +M    + P+ +T    + AC 
Sbjct: 307 SARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACV 366

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           G  AL  GR IH  L KL L  D+ + ++L+ MY++C  +  A  +F   ++ D V+   
Sbjct: 367 GRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNS 426

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           IL   AQ+   EE ++LF  + K+   +D   ++ VL          + KQ+H+   K+ 
Sbjct: 427 ILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKAG 486

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELY 447
              +  ++N LI+ Y+KCG L+D++++F  M   R+  SW+S+I  +A+ G   +AL+L+
Sbjct: 487 LVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLF 546

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+  G+ P  VTF+ +L ACS VG VN+G  +   M   + I P  EH +C+VD++ R
Sbjct: 547 SRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVDLLAR 606

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA +FI++MP +PD+++W+ LL A  +H D EMGK AAE +    P   A Y+L+
Sbjct: 607 AGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAAYVLL 666

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            NIY+ SG W E A+  K M+  GV K  G SW++++ ++  F+V+D+ HP+++ I+ +L
Sbjct: 667 CNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGELKVFIVEDRSHPESEEIYAML 726

Query: 628 AELLRLMIDEGYVP 641
             +   MI  GYVP
Sbjct: 727 ELIGMEMIKAGYVP 740



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 233/476 (48%), Gaps = 25/476 (5%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+ N L++ Y +C    +A ++FD+MP R+ VSW ++++  ++NG      G F   L 
Sbjct: 86  TVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 149 LGFYQLDQASFTIILSACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
            G    DQ +    + AC  +EL  V   + +H          ++ V NAL+T Y K G 
Sbjct: 146 SG-TAADQFALGSAVRAC--TELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGL 202

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVM 265
              G  +F  ++ +++I+W ++I+G  Q     E L++F KM + G  +PN   + S+  
Sbjct: 203 VDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFR 262

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC  + +   G QIHG+  K  L  DL +  +L DMY++  +++ A   F   E  D VS
Sbjct: 263 ACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVS 322

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              I+  ++  G   EA+ LF +M  +G+  D   V  +L       +L  G+ IHS ++
Sbjct: 323 WNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLV 382

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K     +  V N L++MY++C DL  ++ VF  +  ++ V+WNS++ A A+H +  + L+
Sbjct: 383 KLGLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLK 442

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------A 499
           L+  +         ++  ++L A + +G       + + + +VH  + +A          
Sbjct: 443 LFSLLNKSEPSLDRISLNNVLSASAELG-------YFEMVKQVHAYAFKAGLVDDRMLSN 495

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            ++D   + G L +A    E M    DV  W +L     I G ++ G YA E L L
Sbjct: 496 TLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSL-----IVGYAQFG-YAKEALDL 545



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 138/441 (31%), Positives = 210/441 (47%), Gaps = 49/441 (11%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
             +GN LIT Y +C +  S R+VF EM  RN ++W +VI+  VQN    + L LF  M  
Sbjct: 86  TVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLR 145

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
                +     S+V AC+ L  +  GRQ+H    K    SDL +++AL+ MYSK G V+D
Sbjct: 146 SGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDD 205

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVF 368
            + +FE  ++ D +S   I+ GFAQ GFE EA+Q+F KM+  G    PN     +     
Sbjct: 206 GFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGSH-HPNEFHFGSAFRAC 264

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G   S   G+QIH L IK     + +V   L +MY++  +L+ +   F R+   + VSWN
Sbjct: 265 GAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWN 324

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC------SHVGLVNKGMEFL 482
           S++ A++  G   +AL L+ EM+  G+ P  +T   LL AC       H  L++  +  L
Sbjct: 325 SIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKL 384

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
               +V   +     YA   D+     +  E +          DV+ W ++L AC+ H  
Sbjct: 385 GLDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKD--------QDVVTWNSILTACAQHNH 436

Query: 543 SEMGKYAAEKLF--LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600
            E       KLF  L + +     I + N+ S S              E+G        +
Sbjct: 437 PE----EVLKLFSLLNKSEPSLDRISLNNVLSASA-------------ELG--------Y 471

Query: 601 IEIEKQVHSF-----VVDDKM 616
            E+ KQVH++     +VDD+M
Sbjct: 472 FEMVKQVHAYAFKAGLVDDRM 492



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           + + ++ +LS SA+ G+F +   +HA   K            + +  ++ N+L+  Y KC
Sbjct: 455 DRISLNNVLSASAELGYFEMVKQVHAYAFKA----------GLVDDRMLSNTLIDTYAKC 504

Query: 103 DQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A++LF+ M   RD  SW++++ G+ + G        F R   LG  + +  +F  
Sbjct: 505 GSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEALDLFSRMRSLGI-RPNHVTFIG 563

Query: 162 ILSACDR 168
           +L+AC R
Sbjct: 564 VLTACSR 570


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/563 (34%), Positives = 305/563 (54%), Gaps = 13/563 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SL+  YL+  ++  A ++FD+MP RD  +WN M+SG  RN           R +  G  
Sbjct: 106 GSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVA 165

Query: 153 QLDQASFTIILSAC----DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
             D  + + +L  C    DR+ L+LV   +H      G   E+ V NALI  Y K G  +
Sbjct: 166 G-DAVTLSSVLPMCVVLGDRA-LALV---MHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               VFG M +R+++TW ++IS   Q       ++LF  M    + P+ LT +S   A +
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280

Query: 269 GLQALCEGRQIHGILWKLALQ-SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                   + +H  + +      D+   +A++DMY+K   ++ A ++F+   + D VS  
Sbjct: 281 QCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWN 340

Query: 328 VILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            ++ G+ QNG   EA++++  M    G++       +VL  +     L  G ++H+L IK
Sbjct: 341 TLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIK 400

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +    + +V   LI++Y+KCG L +++ +F  M  R++  WN++IA    HG+G KAL L
Sbjct: 401 TGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSL 460

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M+ E ++P  VTF+SLL ACSH GLV++G  F   M  V+ I P A+HY C+VDM+G
Sbjct: 461 FSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLG 520

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L EA  FI+ MP+KPD  VW ALLGAC IHG+ EMGK A++ LF   P++   Y+L
Sbjct: 521 RAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVL 580

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV--VDDKMHPQADTIH 624
           M+N+Y+  G+W         ++   + K  G S +E++  V  F      + HPQ + I 
Sbjct: 581 MSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQ 640

Query: 625 GVLAELLRLMIDEGYVPNKRFIL 647
             L +LL  M   GYVP+  F+L
Sbjct: 641 RGLHDLLAKMKSAGYVPDYSFVL 663



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 177/357 (49%), Gaps = 13/357 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L+  Y K   +  A  +F  M +RD V+WN+++S   + G+       F   +E G
Sbjct: 205 VCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESG 264

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSS 209
               D  +   + SA  +    L +K +HC V   G++  ++  GNA++  Y K     +
Sbjct: 265 VCP-DVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDA 323

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMAC 267
            +KVF  +  R+V++W  +I+G +QN L  E ++++  M  H GL  P   T++S + A 
Sbjct: 324 AQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGL-KPIQGTFVSVLPAY 382

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S L  L +G ++H +  K  L  D+ + + L+D+Y+KCG + +A  +FE           
Sbjct: 383 SYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWN 442

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL--II 385
            I+ G   +G   +A+ LF +M +   EI P+ V+ V  +    +  GL  Q  S   ++
Sbjct: 443 AIIAGLGVHGHGAKALSLFSQMQQE--EIKPDHVTFV-SLLAACSHAGLVDQGRSFFDLM 499

Query: 386 KSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
           ++ +   P   +   +++M  + G L+++ +    M  + +S  W +++ A   HGN
Sbjct: 500 QTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGN 556



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 189/395 (47%), Gaps = 6/395 (1%)

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G + L   SFT           +  +++  C + L      V    +L+ +Y + G  + 
Sbjct: 61  GAHPLRPDSFTFPPLVRAAPGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAE 120

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             +VF EM  R+V  W A++SGL +N    + + L  +M    +  +++T  S +  C  
Sbjct: 121 AYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVV 180

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L        +H    K  L  +L + +AL+D+Y K G + +A  +F      D V+   I
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           +    Q G    A++LF  M+++G+  D   +VS    V      LG  K +H  + +  
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELG-AKSVHCYVRRRG 299

Query: 389 F-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           +   +    N +++MY+K   ++ + KVF  +  R+ VSWN++I  + ++G   +A+ +Y
Sbjct: 300 WDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIY 359

Query: 448 EEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            +M   EG++P   TF+S+L A S++G + +GM  + +++    ++       C++D+  
Sbjct: 360 NDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYA 418

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           + G L+EA    E MP +     W A++    +HG
Sbjct: 419 KCGKLVEAMFLFEHMPRR-STGPWNAIIAGLGVHG 452


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/605 (30%), Positives = 317/605 (52%), Gaps = 13/605 (2%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ LL + A   +   G S+H   I T +    ++VY +       NSL++ Y+KC +  
Sbjct: 34  LNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQI-------NSLINLYVKCGETV 86

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQASFTIILSA 165
            A K+FD MP R+ VSW  M+ G+ +N  FD      FK  +     + ++   T++  +
Sbjct: 87  RARKVFDLMPERNVVSWCAMMKGY-QNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKS 145

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C  S      K  H      G      V N L+  Y  C  +    +V  ++   ++  +
Sbjct: 146 CSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVF 205

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
           ++ +SG ++   ++EG ++  +M    +  +++TYLS +  CS L+ L   RQIH  + +
Sbjct: 206 SSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVR 265

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           L   S++    A+++MY KCG V  A ++F+     + V  T I+  + Q+   EEA+ L
Sbjct: 266 LGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNL 325

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           F KM     E+ PN  +  + +  +   + L  G  +H L++KS + ++  V N L+NMY
Sbjct: 326 FSKMDTK--EVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMY 383

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +K G +ED+ K FS M  R+ V+WN+MI  F+ HG G + LE ++ M + G  P  +TF+
Sbjct: 384 AKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFI 443

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L ACSHVG V +G+ +   + +   + P  +HY C+V ++ +AG+  +A  F+   P+
Sbjct: 444 GVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPI 503

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           + DV+ W+ALL AC +  +  +GK  AE      P+    Y+L++NI++ S  W+  A+ 
Sbjct: 504 EWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEV 563

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
              M + GV KE G+SWI I  Q H F+ ++  HP+   I+  + E+L  +   GY P+ 
Sbjct: 564 RSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLSKIRPLGYSPDV 623

Query: 644 RFILH 648
             + H
Sbjct: 624 AGVFH 628


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 194/589 (32%), Positives = 306/589 (51%), Gaps = 44/589 (7%)

Query: 66  LHASFIKTFEPF----DNQNVY-NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           +H   +  +  F    D QNV+ N+    V  WN+LLS Y K   + N   +FD MP RD
Sbjct: 60  IHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRD 119

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +VS+NT+++ F  NG          R  E GF Q  Q S    L AC +       K IH
Sbjct: 120 SVSYNTLIACFASNGHSGKALKVLVRMQEDGF-QPTQYSHVNALQACSQLLDLRHGKQIH 178

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             + +    E   V NA+   Y KCG     R +F  M  +NV++W  +ISG        
Sbjct: 179 GRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISG-------- 230

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
                +VKM     NPN   +L + M  SGL+                   DL   S ++
Sbjct: 231 -----YVKMG----NPNECIHLFNEMQLSGLKP------------------DLVTVSNVL 263

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           + Y +CG V+DA  +F    + D +  T ++VG+AQNG EE+A  LF  M++  ++ D  
Sbjct: 264 NAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSY 323

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            +S+++       SL  G+ +H  ++     ++  V++ L++MY KCG   D+  +F  M
Sbjct: 324 TISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETM 383

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN ++WN+MI  +A++G   +AL LYE M+ E  +P ++TF+ +L AC +  +V +G 
Sbjct: 384 PIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQ 443

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           ++  S++E H I+P  +HYAC++ ++GR+G + +A   I+ MP +P+  +W  LL  C+ 
Sbjct: 444 KYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCA- 501

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
            GD +  + AA  LF   P +  PYI+++N+Y+  GRWK+ A     MKE    K    S
Sbjct: 502 KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYS 561

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           W+E+  +VH FV +D  HP+   I+G L  L+ ++   GY P+   +LH
Sbjct: 562 WVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLH 610



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 145/332 (43%), Gaps = 53/332 (15%)

Query: 260 YLSSVMACSGLQALCEGRQIHGIL-WKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-- 316
           Y   V+ C+      + +++   +   L    D  I + L+ +Y+K G + DA  +F+  
Sbjct: 25  YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNM 84

Query: 317 -------------------FAEEL----------DGVSMTVILVGFAQNGFEEEAMQLFV 347
                                E L          D VS   ++  FA NG   +A+++ V
Sbjct: 85  TKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLV 144

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           +M + G +  P   S V  +      L L  GKQIH  I+ +D   N FV N + +MY+K
Sbjct: 145 RMQEDGFQ--PTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAK 202

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CGD++ +  +F  M  +N VSWN MI+ + + GN  + + L+ EM+L G++P  VT  ++
Sbjct: 203 CGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNV 262

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF-----IER 520
           L+A    G V+        +       P+ +       +VG A    E  ++     + R
Sbjct: 263 LNAYFRCGRVDDARNLFIKL-------PKKDEICWTTMIVGYAQNGREEDAWMLFGDMLR 315

Query: 521 MPVKPDVLVWQALLGACS-----IHGDSEMGK 547
             VKPD     +++ +C+      HG    GK
Sbjct: 316 RNVKPDSYTISSMVSSCAKLASLYHGQVVHGK 347


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 179/527 (33%), Positives = 298/527 (56%), Gaps = 4/527 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG-EFDMGFGFFKRSLEL 149
           + N+LLSFY  C  +R+A ++FD+MP +D VSWNTM+  F  NG  +      F+  ++ 
Sbjct: 78  VGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDE 137

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + +  + +  L      E     + +H      G E ++ + N+LI  Y K G S+ 
Sbjct: 138 GL-KPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTE 196

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF ++  +NV++W A+I+   QN+     + L  +M      PNS+T+ + + AC+ 
Sbjct: 197 ASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACAR 256

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  +  G++IH     +    DL + +AL DMY+K G ++ A  +F+ +   D VS  ++
Sbjct: 257 MGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFDTSLR-DEVSYNIL 315

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +VG +Q     E++ LF +M   G++ D       L      T++  GK+IH  +++  F
Sbjct: 316 IVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLF 375

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             + FV N L++ Y+KCG +  +  +F RM  ++  SWN+MI  +   G    A++L+E 
Sbjct: 376 HIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFEN 435

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ + VE   V+F+++L ACSH GL+ KG ++   + +   I P   HYAC+VD++GRAG
Sbjct: 436 MRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDEL-KARGIEPTQMHYACMVDLLGRAG 494

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           L+ EA   I+ +P+ PD  +W ALLGAC I+G+ E+  +AAE LF  +P+    Y L++N
Sbjct: 495 LMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLSN 554

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           +Y+ +GRW E  +  + MK  GV K  G SW++I +Q H+FVV +K+
Sbjct: 555 MYAETGRWDEANRIRELMKSRGVKKSPGCSWVQIGEQAHAFVVGEKI 601



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 214/420 (50%), Gaps = 20/420 (4%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNT++ G+   G    G   + + + +G  + D  +F  +L AC  +      + +H  V
Sbjct: 10  WNTLIRGYSIAG-VGGGLEVYNQMVRIGV-RPDDHTFPFVLKACADAFEVRKGREVHGSV 67

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL-VQNQLYEEG 241
              G+E +V VGN L++ Y  CG      +VF EM  +++++W  +I    V    Y + 
Sbjct: 68  VKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDA 127

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L +F  M    + PNS+T  S +     L+    GR++HG   ++ L+SD+ I ++L+DM
Sbjct: 128 LDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDM 187

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           Y+K G   +A  +F   +  + VS   ++  FAQN FE  A+ L  +M   G E+ PN V
Sbjct: 188 YAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYG-EL-PNSV 245

Query: 362 SAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           +    V      +GL   GK+IH+  I      + FV+N L +MY+K G L+ +  VF  
Sbjct: 246 T-FTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD- 303

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            + R+ VS+N +I   ++  +  ++L L+ EM+L G++  +V+F+  L AC+++  + +G
Sbjct: 304 TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQG 363

Query: 479 ME----FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            E     L+ +  +H     +     ++D   + G +  AR+  +RM  K DV  W  ++
Sbjct: 364 KEIHGFLLRKLFHIHLFVANS-----LLDFYTKCGRIGLARNIFDRMTNK-DVASWNTMI 417


>gi|357481223|ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512232|gb|AES93855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 774

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 208/624 (33%), Positives = 321/624 (51%), Gaps = 36/624 (5%)

Query: 46  DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQM 105
           D + L    A++ +   G +LH  +I    P        + N   + N+LL+ Y KC  +
Sbjct: 80  DYAFLFHACAQKKYIKQGMALH-HYILNKHP-------KIQNDIFLTNNLLNMYCKCGHL 131

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
             A  LFD MP R+ VSW  +VSG+ + G     F  F  S  L  ++ ++ +F  +L A
Sbjct: 132 DYARYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALF--SGMLACFRPNEFAFASVLCA 189

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR---------KVFGE 216
           C+  ++      +H        +  V V NALIT Y KC     G           VF  
Sbjct: 190 CEEQDVK-YGLQVHAAALKMSLDFSVYVANALITMYSKCSGGFGGSCDQTTDDAWMVFKS 248

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL---SSVMAC------ 267
           M  RN+I+W ++ISG     L ++ + LF  M+   I  NS T L   SS+  C      
Sbjct: 249 MEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFNSTTLLGVLSSLNHCMSTSDD 308

Query: 268 -SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS-VEDAWQIF-EFAEELDGV 324
            +    L    Q+H +  K  L S++ + +AL+  Y+  G  + D +++F + + E D V
Sbjct: 309 INNTHHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLGGHISDCFKLFLDTSGEHDIV 368

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384
           S T I+  FA+    E+A  LF ++ +    +D +  S  L       +     ++HS +
Sbjct: 369 SWTAIISVFAERD-PEQAFLLFCQLHRENFVLDRHTFSIALKACAYFVTEKNATEVHSQV 427

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           +K  F ++  V+N LI+ Y + G L  S +VF+ M   + VSWNSM+ ++A HG    AL
Sbjct: 428 MKQGFHNDTVVSNALIHAYGRSGSLALSEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDAL 487

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+++M    V P   TF++LL ACSH GLV +G +   SMTE H I+P  +HY+C+VD+
Sbjct: 488 DLFKQMD---VHPDSATFVALLAACSHAGLVEEGTQIFNSMTESHGIAPHLDHYSCMVDL 544

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
            GRAG + EA   I +MP+KPD ++W +LLG+C  HG++++ K AA+K  +  P +   Y
Sbjct: 545 YGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKVLDPKNSLAY 604

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           I M+NIYS  G + E     K M++  V K  G+SW+E+ KQVH F    + HP+   I 
Sbjct: 605 IQMSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQHHPKRQAIL 664

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L  L+  + + GY P     LH
Sbjct: 665 SRLETLIGQLKEMGYAPEIGSALH 688


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 195/557 (35%), Positives = 312/557 (56%), Gaps = 22/557 (3%)

Query: 95   LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
            L++ Y KC  + +A  +F+++  R  V+WN+M+S F  NG ++     ++R L  G  + 
Sbjct: 469  LVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEG-TKP 527

Query: 155  DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG--NALITSYFKCGSSSSGRK 212
            D+ ++  +L AC       VS+      Y   +E E+ +   NA +++Y +CGS    + 
Sbjct: 528  DKITYLAVLDACQS-----VSEARR---YAATFELELDIAARNAAVSAYARCGSLKEAKA 579

Query: 213  VFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
             F  ++ +N  +TW A+ISGL Q+   ++ L+ F KM L  +  NS+TYL+S+ ACS L+
Sbjct: 580  AFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLK 639

Query: 272  ALCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  GRQ+H  IL +   +++L   +A+++MY KCGS+++A   F    E D +S   ++
Sbjct: 640  DLTRGRQLHARILLENIHEANL--SNAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMI 697

Query: 331  VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-- 388
              +AQ+G   +A++ F +M   G   D       +   G   SL LGK IHS++  +   
Sbjct: 698  ATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPC 757

Query: 389  FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
               +P V   L+ MY++CG L D+  VF R   RN V+W+++IAA A+HG   +AL+L+ 
Sbjct: 758  LEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFR 817

Query: 449  EMKLEGVEPTDVTFLSLLHACSHVGLV-NKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+L+G +P  +TF +L+ ACS  G+V + G     ++  V+ +S  AEHY C+V+++GR
Sbjct: 818  EMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEVLGR 877

Query: 508  AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-PAPYIL 566
            AG L EA   I+ MP K    +W ALL AC+  GD E G  AA +     P S  A   +
Sbjct: 878  AGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRAANRAQQLDPGSFAASMAM 937

Query: 567  MANIYSCSGRWKERAKAIKRMKEMGVDKET-GISWIEIEKQVHSFVVDDK--MHPQADTI 623
            +A +Y  +GRW++ A+  K ++     +E  G SWIE+  +VH F  DD     P+ D I
Sbjct: 938  LAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNNRVHEFGEDDDRLQGPRLDKI 997

Query: 624  HGVLAELLRLMIDEGYV 640
             G L  L  L ++EG +
Sbjct: 998  RGELQRLSSLAVEEGGI 1014



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/463 (29%), Positives = 239/463 (51%), Gaps = 21/463 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N++++ Y KC ++  A  +F+ +P R+ VSWN +++   +NG        F+     
Sbjct: 162 VVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLD 221

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + + A+F  ++ AC         K  H  +   G++  + VGN+L+  Y KCGS   
Sbjct: 222 GSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDH 281

Query: 210 GRKVFGEMRVRNVIT---WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            R VF +MR+R+V++   WT +I+    N    E   LF KM L  + PN +T+++ + A
Sbjct: 282 ARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRA 341

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVS 325
           C+ L A CE  +I   +  L L+ D  + +A +  ++K G +  A  +FE      + VS
Sbjct: 342 CTTL-AQCE--KIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVS 398

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSL 383
            TV++  +AQ GF   A  L+ +M     + +PN V+  AV+        L   +QIH+ 
Sbjct: 399 WTVMIWAYAQQGFIRAAFDLYKRM-----DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAH 453

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           ++ S F S+  +   L+ MY KCG ++ +  +F  +  R+ V+WNSM++AFA +G   ++
Sbjct: 454 MVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERS 513

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L+LYE M LEG +P  +T+L++L AC  V    +     +   ++   +     YA    
Sbjct: 514 LKLYERMLLEGTKPDKITYLAVLDACQSVSEARRYAATFELELDIAARNAAVSAYA---- 569

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
              R G L EA++  + +  K + + W A++   + HG+S+  
Sbjct: 570 ---RCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQA 609



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/478 (30%), Positives = 240/478 (50%), Gaps = 25/478 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N L+  Y KC  +++AV++F+ +P  +  SW  +++ + + G      GFF R ++L   
Sbjct: 65  NHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFF-RKMQLDGT 123

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D   F+ +L+AC  +      K IH  V L G E +V VGNA++  Y KCG     + 
Sbjct: 124 KPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKA 182

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQ 271
           VF  +  RN+++W A+I+   QN   ++ +++F  M L G + PN  T++S V ACS L 
Sbjct: 183 VFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLL 242

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---FAEELDGVSMTV 328
            L  G+  H  + +    S L + ++L++MY KCGSV+ A  +FE     + L   S TV
Sbjct: 243 DLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTV 302

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+  FA NG   EA  LF KM   G+   PN V+ V  V    T+L   ++I + +    
Sbjct: 303 IIAAFAHNGHLLEAFVLFYKMDLEGVL--PNKVTFVT-VLRACTTLAQCEKIFARVKHLG 359

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELY 447
              +  +    ++ ++K GDL  +  VF  + + RN VSW  MI A+A+ G    A +LY
Sbjct: 360 LELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLY 419

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH----YACVVD 503
           + M     EP  VTF++++ +C     + +  +        H ++   E       C+V 
Sbjct: 420 KRMD---CEPNAVTFMAVMDSCLRPEDLPRAEQI-----HAHMVASGFESDVVLQVCLVT 471

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL--AQPD 559
           M G+ G +  A S  E +  +  V+ W ++L A + +G  E      E++ L   +PD
Sbjct: 472 MYGKCGSVDSAWSIFENLKER-SVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPD 528



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 130/434 (29%), Positives = 205/434 (47%), Gaps = 33/434 (7%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L  A +  +L  C   + +   K++H  +   G      + N LI  Y KCG      +V
Sbjct: 24  LQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEV 83

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +   NV +WTA+I+   +     E L  F KM L    P++  + + + ACS   AL
Sbjct: 84  FELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGAL 143

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            EG+ IH  +    +++ + + +A++++Y KCG V +A  +FE   E + VS   ++   
Sbjct: 144 NEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAAN 202

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTS 391
           AQNG  ++AMQ+F  M   G  + PN  + V  V      L L  GK  H  II++ F S
Sbjct: 203 AQNGHCKDAMQVFQLMDLDG-SVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDS 261

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV---SWNSMIAAFARHGNGFKALELYE 448
             FV N L+NMY KCG ++ +  VF +M  R+ +   SW  +IAAFA +G+  +A  L+ 
Sbjct: 262 YLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFY 321

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV--- 505
           +M LEGV P  VTF+++L AC+             ++ +  +I  R +H    +D     
Sbjct: 322 KMDLEGVLPNKVTFVTVLRACT-------------TLAQCEKIFARVKHLGLELDTTLGT 368

Query: 506 ------GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
                  + G L  AR   E +    +V+ W  ++ A +  G       AA  L+     
Sbjct: 369 AFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIR----AAFDLYKRMDC 424

Query: 560 SPAPYILMANIYSC 573
            P     MA + SC
Sbjct: 425 EPNAVTFMAVMDSC 438



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 146/312 (46%), Gaps = 21/312 (6%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  +      +N +  N+ NA      +++ Y KC  +  A+  F  MP RD +S
Sbjct: 644 GRQLHARIL-----LENIHEANLSNA------VINMYGKCGSLDEAMDEFVKMPERDVIS 692

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNTM++ + ++G       FFK+ ++L  +  D+A++   + AC       + K IH +V
Sbjct: 693 WNTMIATYAQHGSGRQALEFFKQ-MDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIV 751

Query: 183 YLCG--YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
                  E++  V  AL+T Y +CGS    + VF     RN++TW+ +I+   Q+    E
Sbjct: 752 ATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENE 811

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKL-ALQSDLCIESAL 298
            L LF +M L    P++LT+ + V ACS    + + GR+I   L ++  + +       +
Sbjct: 812 ALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCM 871

Query: 299 MDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           +++  + G +E+A  + +    +  G     +L    + G  E      ++      ++D
Sbjct: 872 VEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERG----IRAANRAQQLD 927

Query: 358 PNMVSAVLGVFG 369
           P   +A + +  
Sbjct: 928 PGSFAASMAMLA 939



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 112/205 (54%), Gaps = 8/205 (3%)

Query: 340 EEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           E ++Q  +  +K   E + P   +++L       S   GK +H  I+ S    N ++ N 
Sbjct: 7   ELSLQTHINQLKKSSESLQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNH 66

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI MY+KCG L+D+++VF  +   N  SW ++I A+A+ G+  + L  + +M+L+G +P 
Sbjct: 67  LIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPD 126

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARS 516
              F ++L ACS  G +N+G    K++ +   ++          +V++ G+ G + EA++
Sbjct: 127 AFVFSTVLTACSSAGALNEG----KAIHDCVVLAGMETQVVGNAIVNLYGKCGRVHEAKA 182

Query: 517 FIERMPVKPDVLVWQALLGACSIHG 541
             ER+P + +++ W AL+ A + +G
Sbjct: 183 VFERLPER-NLVSWNALIAANAQNG 206


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/571 (32%), Positives = 309/571 (54%), Gaps = 12/571 (2%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           A  + N L+  Y KC +M +A   F + P    R+ VSWN M+ G+ RNGE    FG  +
Sbjct: 199 APRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLR 258

Query: 145 R-SLELGFYQLDQASFTIILSACDRSELSLVSKM--IHCLVYLCG-YEEEVTVGNALITS 200
              +E      D+ +   +L  C  S L  ++K+  +H  V   G +     V NALI +
Sbjct: 259 EMQMEERGVPADEITMLSVLPVC--SGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAA 316

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLT 259
           Y +CG      +VF  +  + V +W A+I    QN      ++LF +M       P+  +
Sbjct: 317 YGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFS 376

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             S ++AC  L+ L  G+  HG + +  L+ D  I  +L+ +Y +CG    A  +F+  E
Sbjct: 377 IGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVE 436

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLG 377
           E D VS   ++ G++QNG   E++QLF +M        P++++A   +       ++ LG
Sbjct: 437 EKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLG 496

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K++H   +K+D   + F+++ +I+MYSKCG ++D+   F R+  +++VSW  MI  +A +
Sbjct: 497 KEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVN 556

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G G +A+ LY++M  EG+EP   T+L LL AC H G++  G+ F + M  + +I  + EH
Sbjct: 557 GRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEH 616

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
           YACV+ M+ RAG   +A + +E MP +PD  +  ++L AC +HG+ E+GK  A+KL   +
Sbjct: 617 YACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELE 676

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           P     Y+L +N+Y+ S +W E  K  K +++ GV KE G SWI+I  +V+SFV  +   
Sbjct: 677 PHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSL 736

Query: 618 PQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           P+   +  +   L   +   GY P+   +LH
Sbjct: 737 PEMHKVRKMWYSLEEKIRAAGYAPDTTVMLH 767



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 245/527 (46%), Gaps = 44/527 (8%)

Query: 42  DNYVDISRLLSIS--AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP-------NATVIW 92
           D    + RLL+ S       F L P+L     K+    D + V+ V            + 
Sbjct: 48  DALAILPRLLAASDGVAPDRFTLPPAL-----KSCRGDDGRQVHAVAAKLGLADGDPFVG 102

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE--LG 150
           NSL+S Y +C ++ +A K+F+ M  R+ VSWN +++      +   G   F+  LE   G
Sbjct: 103 NSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAV---ADPRRGLELFRDCLEDLGG 159

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+A+   +L  C         + +H L    G++    V N L+  Y KCG  +  
Sbjct: 160 TAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADA 219

Query: 211 RKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL--INPNSLTYLSSVM 265
              F E      RNV++W  ++ G  +N        L  +M +    +  + +T LS + 
Sbjct: 220 ECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLP 279

Query: 266 ACSGLQALCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
            CSGL  L + R++H  + +  L L  D+ + +AL+  Y +CG +  A ++F+       
Sbjct: 280 VCSGLPELAKLRELHAFVVRRGLHLTGDM-VPNALIAAYGRCGCLLHACRVFDGICSKMV 338

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            S   ++   AQNG    A++LF +M  A G + D   + ++L   G    L  GK  H 
Sbjct: 339 SSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHG 398

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            I+++    + F+   L+++Y +CG    +  +F  +  ++ VSWN+MIA ++++G   +
Sbjct: 399 FILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGE 458

Query: 443 ALELYEEM--KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE---- 496
           +L+L+ EM  K  G  P+ +   S L ACS +  V  G        E+H  + +A+    
Sbjct: 459 SLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLG-------KEMHCFALKADLCED 511

Query: 497 --HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               + ++DM  + G + +AR F +R+  K D + W  ++   +++G
Sbjct: 512 SFLSSSIIDMYSKCGSVDDARVFFDRLKAK-DAVSWTVMITGYAVNG 557



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 171/362 (47%), Gaps = 19/362 (5%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELG-FYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           WN +++   R G          R L        D+ +    L +C   +     + +H +
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD----GRQVHAV 88

Query: 182 VYLCGYEE-EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
               G  + +  VGN+L++ Y +CG      KVF  M  RN+++W A+++ +   +    
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPR---R 145

Query: 241 GLKLF---VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           GL+LF   ++   G   P+  T ++ +  C+ L     GR +HG+  K    +   + + 
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNV 205

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDG---VSMTVILVGFAQNGFEEEAMQLF--VKMVKA 352
           L+DMY+KCG + DA   F  A    G   VS  V+L G+A+NG    A  L   ++M + 
Sbjct: 206 LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEER 265

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDLED 411
           G+  D   + +VL V      L   +++H+ +++     +   V N LI  Y +CG L  
Sbjct: 266 GVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLH 325

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACS 470
           + +VF  +  +   SWN++I A A++G    A+EL+ EM    G +P   +  SLL AC 
Sbjct: 326 ACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACG 385

Query: 471 HV 472
           ++
Sbjct: 386 NL 387



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 146/313 (46%), Gaps = 49/313 (15%)

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN---MVSAVLGVFGVDTSLGLGKQIHSLII 385
           +L   ++ G   +A+ +  +++ A   + P+   +  A+    G D     G+Q+H++  
Sbjct: 36  LLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDD-----GRQVHAVAA 90

Query: 386 KSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           K      +PFV N L++MY +CG ++D+ KVF  MA RN VSWN+++AA A   +  + L
Sbjct: 91  KLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVA---DPRRGL 147

Query: 445 ELYEEM--KLEGV-EPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEH 497
           EL+ +    L G   P + T +++L  C+ +     G       +KS  +    +PR  +
Sbjct: 148 ELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDA---APRVSN 204

Query: 498 YACVVDMVGRAGLLIEAR-SFIERMP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
              +VDM  + G + +A  +F+E  P    +V+ W  +LG  + +G++        ++ +
Sbjct: 205 V--LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQM 262

Query: 556 AQPDSPAPYILMANIYS-CSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
            +   PA  I M ++   CSG   E AK                      +++H+FVV  
Sbjct: 263 EERGVPADEITMLSVLPVCSG-LPELAKL---------------------RELHAFVVRR 300

Query: 615 KMHPQADTIHGVL 627
            +H   D +   L
Sbjct: 301 GLHLTGDMVPNAL 313


>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 611

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/563 (31%), Positives = 306/563 (54%), Gaps = 5/563 (0%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y      ++  +L+  Y +   +  A  LFD+MP RD V+W  M++G+  +      +  
Sbjct: 39  YKPKKHHILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAWEC 98

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F    + G    ++ + + +L +C   ++     ++H +V   G E  + V NAL+  Y 
Sbjct: 99  FHEMFKQG-RSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYA 157

Query: 203 KCGSS-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            C  +  +   +F +++V+N +TWT +I+G         GLK++ +M L   +       
Sbjct: 158 TCSVTMEAAFLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENADVTPYCIT 217

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
            +V A + + ++  G+QIH  + K   QS+L + ++++D Y +CG + +A + F   E+ 
Sbjct: 218 IAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYFHEMEDK 277

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           D ++   ++    ++    EA+ +F +    G   +    ++++       +L  G+Q+H
Sbjct: 278 DLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLH 336

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNG 440
             I +  F  N  + N LI+MY+KCGD+ DS +VF  +  R N VSW SM+  +  HG G
Sbjct: 337 GRIYRRGFNKNVELANALIDMYAKCGDIPDSERVFGEIEERRNLVSWTSMMIGYGSHGYG 396

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +A+EL+++M   G+ P  + F+++L AC H GLV KG+++   M   + I+P  + Y C
Sbjct: 397 AEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNC 456

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM-GKYAAEKLFLAQPD 559
           VVD++GRAG + EA   +ERMP KPD   W A+LGAC  H  + +  + AA+K+   +P 
Sbjct: 457 VVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHTGLISRLAAKKVMELKPR 516

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
               Y++++ IY+  G+W E A+  K M+ MG  KE G+SWIE+E QV SF V DKM P 
Sbjct: 517 MVGTYVMLSYIYAAEGKWVEFARVRKMMRMMGNKKEAGMSWIEVENQVFSFAVSDKMCPN 576

Query: 620 ADTIHGVLAELLRLMIDEGYVPN 642
           A +++ VL  L+    + GYVP+
Sbjct: 577 ASSVYSVLGLLIEETKEAGYVPD 599


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 311/585 (53%), Gaps = 33/585 (5%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  Y+KC ++ +A  LFD M  RD V+W  M+ G+   G+ +     F++  E G   
Sbjct: 198 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 257

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D+ +   ++ AC +      +++I   +    ++ +V +G A+I  Y KCG   S R++
Sbjct: 258 -DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREI 316

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  +NVI+W+A+I+    +    + L LF  M    + P+ +T  S + AC   + L
Sbjct: 317 FDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNL 376

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            + RQ+H       +  +L + + L+  YS   +++DA+ +F+     D VS +V++ GF
Sbjct: 377 TQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 436

Query: 334 AQNG--------FEE--------------------EAMQLFVKMVKAGIEIDPNMVSAVL 365
           A+ G        F E                    E++ LF KM + G+   P+ V+ V 
Sbjct: 437 AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVV--PDKVAMVT 494

Query: 366 GVFGVDT--SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            VF      ++   + I   I +  F  +  +   +I+M++KCG +E + ++F RM  +N
Sbjct: 495 VVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN 554

Query: 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483
            +SW++MIAA+  HG G KAL+L+  M   G+ P  +T +SLL+ACSH GLV +G+ F  
Sbjct: 555 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 614

Query: 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            M E + +    +HY CVVD++GRAG L EA   IE M V+ D  +W A LGAC  H D 
Sbjct: 615 LMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDV 674

Query: 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEI 603
            + + AA  L   QP +P  YIL++NIY+ +GRW++ AK    M +  + K  G +WIE+
Sbjct: 675 VLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEV 734

Query: 604 EKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + + H F V D  HP++  I+ +L  L   +   GYVP+  F+LH
Sbjct: 735 DNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLH 779



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/607 (24%), Positives = 278/607 (45%), Gaps = 61/607 (10%)

Query: 1   MKSKWVFLKLNSNFPFCSSL-VSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           ++ + +    N     C++  V P +  II+     TS  + +   + S+   +      
Sbjct: 23  LRDRSIIALRNGKLGCCTAHSVIPIVESIIETQFRQTSLNLHNREEESSKFHFLQRLNPK 82

Query: 60  FHLGPSLHASFIKTFEPFDNQ-NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F++   ++   +        Q +V+ +    V+ N L+ FY     + +A  LFD M +R
Sbjct: 83  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 142

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-DRSELSLVSKM 177
           D+VSW+ MV GF + G++   FG F+  +  G  + D  +   ++ AC D   L +    
Sbjct: 143 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQM---- 197

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
                             AL+  Y KC      R +F +M+ R+++TWT +I G  +   
Sbjct: 198 ------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 239

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E L LF KM    + P+ +  ++ V AC+ L A+ + R I   + +   Q D+ + +A
Sbjct: 240 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 299

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++DMY+KCG VE A +IF+  EE + +S + ++  +  +G   +A+ LF  M+ +G+  D
Sbjct: 300 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 359

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              ++++L       +L   +Q+H+         N  V N L++ YS    L+D+  +F 
Sbjct: 360 KITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFD 419

Query: 418 RMAPRNSVSWNSMIAAFAR----------------------------HGNGFKALELYEE 449
            M  R+SVSW+ M+  FA+                             GN  ++L L+++
Sbjct: 420 GMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDK 479

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+ EGV P  V  ++++ AC+ +G ++K    +    +  +          ++DM  + G
Sbjct: 480 MREEGVVPDKVAMVTVVFACAKLGAMHKA-RTIDDYIQRKKFQLDVILGTAMIDMHAKCG 538

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILM 567
            +  AR   +RM  K +V+ W A++ A   HG    G+ A +   + L     P    L+
Sbjct: 539 CVESAREIFDRMEEK-NVISWSAMIAAYGYHGQ---GRKALDLFPMMLRSGILPNKITLV 594

Query: 568 ANIYSCS 574
           + +Y+CS
Sbjct: 595 SLLYACS 601



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 183/387 (47%), Gaps = 43/387 (11%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            ++  +++  Y KC  + +A ++FD M  ++ +SW+ M++ +  +G+       F+  L 
Sbjct: 294 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 353

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI--TSYFKCGS 206
            G    D+ +   +L AC         + +H    + G  + + V N L+   SY++   
Sbjct: 354 SGMLP-DKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALD 412

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLY---------------------------- 238
            + G  +F  M VR+ ++W+ ++ G  +   Y                            
Sbjct: 413 DAYG--LFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNA 470

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E L LF KM    + P+ +  ++ V AC+ L A+ + R I   + +   Q D+ + +A+
Sbjct: 471 NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAM 530

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DM++KCG VE A +IF+  EE + +S + ++  +  +G   +A+ LF  M+++GI   P
Sbjct: 531 IDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGIL--P 588

Query: 359 NMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSI 413
           N ++ V  ++    + GL   G +  SL+ + D++    V +   ++++  + G L++++
Sbjct: 589 NKITLVSLLYACSHA-GLVEEGLRFFSLMWE-DYSVRADVKHYTCVVDLLGRAGRLDEAL 646

Query: 414 KVFSRMA-PRNSVSWNSMIAAFARHGN 439
           K+   M   ++   W + + A   H +
Sbjct: 647 KLIESMTVEKDEGLWGAFLGACRTHKD 673



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 161/371 (43%), Gaps = 63/371 (16%)

Query: 81  NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF 140
           +V+ +    ++ N L+ FY     + +A  LFD M +RD+VSW+ MV GF + G++   F
Sbjct: 387 SVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCF 446

Query: 141 GFFKRSLELGF----YQL-----------------------DQASFTIILSACDRSELSL 173
           G F+  +  G     Y L                       D+ +   ++ AC +     
Sbjct: 447 GTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMH 506

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            ++ I   +    ++ +V +G A+I  + KCG   S R++F  M  +NVI+W+A+I+   
Sbjct: 507 KARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 566

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK-LALQSDL 292
            +    + L LF  M    I PN +T +S + ACS    + EG +   ++W+  ++++D+
Sbjct: 567 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 626

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
              + ++D+  + G +++A ++ E        SMTV                        
Sbjct: 627 KHYTCVVDLLGRAGRLDEALKLIE--------SMTV------------------------ 654

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
             E D  +  A LG       + L ++  + +++     NP     L N+Y+  G  ED 
Sbjct: 655 --EKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ-PQNPGHYILLSNIYANAGRWEDV 711

Query: 413 IKVFSRMAPRN 423
            K    M+ R 
Sbjct: 712 AKTRDLMSQRR 722


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/504 (33%), Positives = 286/504 (56%), Gaps = 19/504 (3%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEE------------------EVTVGNALIT 199
           SFTI  S C  S  S + K    L+  C   +                     +G  LI 
Sbjct: 22  SFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIF 81

Query: 200 SYFK-CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258
           +    C   S   ++F +++  N+ TW  +I G  +++     L+L+ +MH+  I P++ 
Sbjct: 82  TLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTH 141

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           TY   + A + L  + EG ++H I  +   +S + +++ L+ MY+ CG  E A ++FE  
Sbjct: 142 TYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELM 201

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            E + V+   ++ G+A NG   EA+ LF +M   G+E D   + ++L       +L LG+
Sbjct: 202 AERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR 261

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           + H  ++K     N    N L+++Y+KCG +  + KVF  M  ++ VSW S+I   A +G
Sbjct: 262 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 321

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
            G +ALEL++E++ +G+ P+++TF+ +L+ACSH G+V++G ++ K M E + I P+ EHY
Sbjct: 322 FGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHY 381

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
            C+VD++GRAGL+ +A  FI+ MP++P+ +VW+ LLGAC+IHG   +G+ A  +L   +P
Sbjct: 382 GCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEP 441

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHP 618
                Y+L++N+Y+   RW +  K  + M   GV K  G S +E+  ++H FV+ D+ HP
Sbjct: 442 KHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHP 501

Query: 619 QADTIHGVLAELLRLMIDEGYVPN 642
           Q + I+  LAE+ +L+  EGYVP+
Sbjct: 502 QTEEIYVKLAEITKLLKLEGYVPH 525



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 213/428 (49%), Gaps = 21/428 (4%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ LLS ++ +  F     +HA  I+   P  N ++        +  +LLSF   C  M 
Sbjct: 43  IALLLSCASSKFKFR---QIHAFSIRHGVPLTNPDM-----GKYLIFTLLSF---CSPMS 91

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++F  +   +  +WNTM+ G+  + E  M      R + +   + D  ++  +L A 
Sbjct: 92  YAHQIFSQIQNPNIFTWNTMIRGYAES-ENPMPALELYRQMHVSCIEPDTHTYPFLLKAI 150

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            +       + +H +    G+E  V V N L+  Y  CG + S  K+F  M  RN++TW 
Sbjct: 151 AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 210

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           +VI+G   N    E L LF +M L  + P+  T +S + AC+ L AL  GR+ H  + K+
Sbjct: 211 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV 270

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L  +L   +AL+D+Y+KCGS+  A ++F+  EE   VS T ++VG A NGF +EA++LF
Sbjct: 271 GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELF 330

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINM 402
            ++ + G+   P+ ++ V GV    +  G+  +       +K ++   P + +   ++++
Sbjct: 331 KELERKGLM--PSEITFV-GVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDL 387

Query: 403 YSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN-GFKALELYEEMKLEGVEPTDV 460
             + G ++ + +    M  + N+V W +++ A   HG+     +   + ++LE     D 
Sbjct: 388 LGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDY 447

Query: 461 TFLSLLHA 468
             LS L+A
Sbjct: 448 VLLSNLYA 455


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 298/558 (53%), Gaps = 48/558 (8%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F LG ++HA  ++     D            + NSL+  Y KC +M  AVK+F+ +P   
Sbjct: 266 FRLGQAIHALVVRKGFGSDQH----------VGNSLIDMYTKCVEMDEAVKVFESLPSVT 315

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            VSWN +++GF + G          +++E+                     LSL+ +   
Sbjct: 316 IVSWNILITGFGQEGSC-------AKAVEV---------------------LSLMQE--- 344

Query: 180 CLVYLCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
                 G+E  EVT  N L+ S  K     S R +F ++   +V TW  ++SG  Q + +
Sbjct: 345 -----AGFEPNEVTYSN-LLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQH 398

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           ++ ++LF +M    + P+  T    + +CS L  L  GRQ+H    +  L +D+ + S L
Sbjct: 399 QDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGL 458

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMYSKCG +  A  IF    E D V    I+ G   +   +EA   F +M + GI    
Sbjct: 459 VDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTE 518

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           +  ++++      +S+  G+QIH+ ++K  +  N +V + LI+MY+KCG+++D+   F  
Sbjct: 519 SSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDT 578

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  +N V+WN MI  +A++G G KA+EL+E M     +P  VTF+++L  CSH GLV+K 
Sbjct: 579 MMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKA 638

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
           M F  SM   + I P AEHY C++D +GRAG  +E  + I +MP K D ++W+ LL AC 
Sbjct: 639 MAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACV 698

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +H ++E+GK AAE LF   P +P+PY+L++NIY+  GR  + +     M   GV K  G 
Sbjct: 699 VHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGY 758

Query: 599 SWIEIEKQVHSFVVDDKM 616
           SWI+ +  V +F+V D +
Sbjct: 759 SWIDQKDGVRAFMVADDL 776



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 169/284 (59%), Gaps = 9/284 (3%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLI 253
           NA +++  + G   + R + G M  RN ++W  VIS L ++     E ++++ +M    +
Sbjct: 78  NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P   T  S + AC GL AL +GR+ HG+  K+ L ++  +E+AL+ MY+KCGSV DA +
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVR 197

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV------ 367
           +F      + VS T ++ G AQ G  ++A++LF +M ++G+ +DP  VS+VLG       
Sbjct: 198 LFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACA 257

Query: 368 --FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
             + V  +  LG+ IH+L+++  F S+  V N LI+MY+KC ++++++KVF  +     V
Sbjct: 258 TDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIV 317

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
           SWN +I  F + G+  KA+E+   M+  G EP +VT+ +LL +C
Sbjct: 318 SWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC 361



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 223/498 (44%), Gaps = 59/498 (11%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+LL  Y KC  + +AV+LF  M   + VS+  M+ G  + G  D     F R    G
Sbjct: 178 VENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSG 237

Query: 151 FYQLDQASFTIILSACDRSELSLVS--------KMIHCLVYLCGYEEEVTVGNALITSYF 202
              +D  S + +L AC ++  +  S        + IH LV   G+  +  VGN+LI  Y 
Sbjct: 238 V-PVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYT 296

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KC       KVF  +    +++W  +I+G  Q     + +++   M      PN +TY +
Sbjct: 297 KCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSN 356

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + +C       + R +H                              A  +F+      
Sbjct: 357 LLASC------IKARDVH-----------------------------SARAMFDKISRPS 381

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
             +   +L G+ Q    ++ ++LF +M    ++ D   ++ +L        L  G+Q+HS
Sbjct: 382 VTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHS 441

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             ++    ++ FV +GL++MYSKCG +  +  +F++M  R+ V WNS+I+    H    +
Sbjct: 442 ASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKE 501

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--AC 500
           A + +++M+  G+ PT+ ++ S++++CS +  +  G +      +V +       Y  + 
Sbjct: 502 AFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI---HAQVMKDGYDQNVYVGSA 558

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE--MGKYAAE--KLFLA 556
           ++DM  + G + +AR F + M +K +++ W  +     IHG ++  +G  A E  +  L 
Sbjct: 559 LIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEM-----IHGYAQNGLGDKAVELFEYMLT 612

Query: 557 QPDSPAPYILMANIYSCS 574
               P     +A +  CS
Sbjct: 613 TEQKPDAVTFIAVLTGCS 630



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 209/468 (44%), Gaps = 67/468 (14%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN-GEFDMGFGFFKRSLELG 150
           +N+ LS   +   +  A  L   MP R+ VSWNT++S   R+ G+       + R    G
Sbjct: 77  YNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEG 136

Query: 151 FYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              L    FT+  +LSAC         +  H +    G +    V NAL+  Y KCGS  
Sbjct: 137 ---LLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVG 193

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC- 267
              ++F  M   N +++TA++ GL Q    ++ L+LF +M    +  + ++  S + AC 
Sbjct: 194 DAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACA 253

Query: 268 -------SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
                  S  +A   G+ IH ++ +    SD  + ++L+DMY+KC  +++A ++FE    
Sbjct: 254 QACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPS 313

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
           +  VS  +++ GF Q G   +A+++   M +AG E +    S +L       S    + +
Sbjct: 314 VTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLL------ASCIKARDV 367

Query: 381 HSLIIKSDFTSNPFVN--NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           HS     D  S P V   N L++ Y +    +D+I++F RM  +N               
Sbjct: 368 HSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQN--------------- 412

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
                           V+P   T   +L +CS +G+++ G        +VH  S R   +
Sbjct: 413 ----------------VQPDRTTLAVILSSCSKLGILDFG-------RQVHSASVRFLLH 449

Query: 499 ------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
                 + +VDM  + G +  ARS   +M  + DV+ W +++   +IH
Sbjct: 450 NDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLTIH 496



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 178/410 (43%), Gaps = 49/410 (11%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  +K G    G  +H++ ++          + + N   + + L+  Y KC Q+  A 
Sbjct: 423 ILSSCSKLGILDFGRQVHSASVR----------FLLHNDMFVASGLVDMYSKCGQIGIAR 472

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +F+ M  RD V WN+++SG   +      F FFK+  E G     ++S+  ++++C R 
Sbjct: 473 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT-ESSYASMINSCSRL 531

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + IH  V   GY++ V VG+ALI  Y KCG+    R  F  M ++N++ W  +I
Sbjct: 532 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 591

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            G  QN L ++ ++LF  M      P+++T+++ +  CS                     
Sbjct: 592 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS--------------------- 630

Query: 290 SDLCIESALMD-MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
                 S L+D   +   S+E+++ I   AE       T ++    + G   E   L  K
Sbjct: 631 -----HSGLVDKAMAFFNSMENSYGIIPLAEHY-----TCLIDALGRAGRFVEVEALIHK 680

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M     + DP +   +L    V  +  LGK     + + D   NP     L N+Y+  G 
Sbjct: 681 MP---CKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRID-PKNPSPYVLLSNIYASLGR 736

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
             D+  V + M+ R  V       ++    +G +A  + +++  +G E T
Sbjct: 737 HGDASAVRALMSNRGVVKGRGY--SWIDQKDGVRAFMVADDLGADGGELT 784



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKALELYE 448
           + N +  N  ++   + GDL+ +  +   M  RN+VSWN++I+A AR  G+G +A+E+Y 
Sbjct: 71  SPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYG 130

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            M+ EG+ PT  T  S+L AC  +  +  G
Sbjct: 131 RMRAEGLLPTHFTLASVLSACGGLAALGDG 160


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/587 (32%), Positives = 320/587 (54%), Gaps = 26/587 (4%)

Query: 68  ASFIKTFEPFDNQNVYN-VPNA-TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT 125
           A +     P + Q +++ +P   T+ WN L+S Y+K   +  A K+FD MP R+ VSW +
Sbjct: 55  AGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTS 114

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ---ASFTIILSACDRSELSLVSKMIHCLV 182
           MV G+++ G  D          EL F+++ +    S+T++L           ++ +  ++
Sbjct: 115 MVRGYVQEGLID--------EAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMI 166

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
            +    ++V     +I      G  S  R++F EM  RNV+ WT++ISG   N   +   
Sbjct: 167 PV----KDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVAR 222

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF  M     + N +T+ + +   +    + E  +    L+K      +   + ++  +
Sbjct: 223 KLFEVMP----DKNEVTWTAMLKGYTRSGRINEAAE----LFKAMPVKPVAACNGMIMGF 274

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
              G V  A  +F+  +E D  + + ++  + + GFE EA+ LF  M + G+  +   + 
Sbjct: 275 GLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSII 334

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           ++L V G   SL  G+Q+HS +++S F  + +V++ LI MY KCGDL    +VF R + +
Sbjct: 335 SILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK 394

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + V WNS+IA +A+HG G KALE++ EM   G  P ++TF+ +L AC + G V +G+E  
Sbjct: 395 DIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIF 454

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
           +SM   +++  + EHYAC+VD++GRAG L EA + IE MPV+ D +VW ALL AC  H +
Sbjct: 455 ESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKN 514

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            ++ + AA+KL   +P S  PYIL++N+Y+   RWK+ A+  K M+   V K  G SWIE
Sbjct: 515 LDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIE 574

Query: 603 IEKQVHSFVVDDKM-HPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++ +VH F       HP+ + I   L +L   + + GY P+  F++H
Sbjct: 575 VDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMH 621



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 195/432 (45%), Gaps = 37/432 (8%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           VT  NA++  YF     +  +K+F +M  RN I+W  ++SG V+N +  E  K+F KM  
Sbjct: 47  VTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMP- 105

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
                N +++ S V      + L +  ++  + W++  + ++   + ++    + G V++
Sbjct: 106 ---ERNVVSWTSMVRGYV-QEGLIDEAEL--LFWRMP-EKNVVSWTVMLGGLIEDGRVDE 158

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+     D V+ T ++ G    G   EA ++F +M +  +    +M+S       V
Sbjct: 159 ARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKV 218

Query: 371 DTSLGL------GKQIHSLIIKSDFTSNPFVN-----------------NGLINMYSKCG 407
           D +  L        ++    +   +T +  +N                 NG+I  +   G
Sbjct: 219 DVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNG 278

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
           ++  +  VF +M  ++  +W+++I  + R G   +AL L+  M+ EGV P   + +S+L 
Sbjct: 279 EVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILS 338

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
            C  +  ++ G +    +   H         + ++ M  + G L+  +   +R   K D+
Sbjct: 339 VCGSLASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSK-DI 396

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC--SGRWKERAKAIK 585
           ++W +++   + HG  E       ++F +   +P     +  + +C  +G+ KE  +  +
Sbjct: 397 VMWNSIIAGYAQHGFGEKALEVFHEMF-SSGAAPDEITFIGVLSACGYTGKVKEGLEIFE 455

Query: 586 RMK-EMGVDKET 596
            MK +  VD++T
Sbjct: 456 SMKSKYQVDQKT 467



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 65/356 (18%)

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
           Y   +     +    I+ + + G     R +F +++ + V +W A+++G   N+   E  
Sbjct: 8   YRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQ 67

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF KM      P   T                      I W           + L+  Y
Sbjct: 68  KLFDKM------PERNT----------------------ISW-----------NGLVSGY 88

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            K G + +A ++F+   E + VS T ++ G+ Q G  +EA  LF +M       + N+VS
Sbjct: 89  VKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMP------EKNVVS 142

Query: 363 --AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
              +LG    D  +   +++  +I   D  ++  +  GL +     G L ++ ++F  M 
Sbjct: 143 WTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSE----GRLSEAREIFDEMP 198

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            RN V+W SMI+ +A +     A +L+E M     +  +VT+ ++L   +  G +N+  E
Sbjct: 199 QRNVVAWTSMISGYAMNNKVDVARKLFEVMP----DKNEVTWTAMLKGYTRSGRINEAAE 254

Query: 481 FLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
             K+M     + P A   AC  ++   G  G + +AR   ++M  K D   W AL+
Sbjct: 255 LFKAMP----VKPVA---ACNGMIMGFGLNGEVGKARWVFDQMKEKDDG-TWSALI 302



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 122/310 (39%), Gaps = 60/310 (19%)

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           I ++    S   I    +  +++ G ++ A  IF+  +     S   I+ G+  N    E
Sbjct: 6   IPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAE 65

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A +LF KM +                                        N    NGL++
Sbjct: 66  AQKLFDKMPE---------------------------------------RNTISWNGLVS 86

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            Y K G + ++ KVF +M  RN VSW SM+  + + G   +A  L+  M  + V    V+
Sbjct: 87  GYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VS 142

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG---RAGLLIEARSFI 518
           +  +L      G V++       M  V  +           +M+G     G L EAR   
Sbjct: 143 WTVMLGGLIEDGRVDEARRLF-DMIPVKDV-------VASTNMIGGLCSEGRLSEAREIF 194

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRW 577
           + MP + +V+ W +++   +++   ++    A KLF   PD +   +  M   Y+ SGR 
Sbjct: 195 DEMPQR-NVVAWTSMISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLKGYTRSGRI 249

Query: 578 KERAKAIKRM 587
            E A+  K M
Sbjct: 250 NEAAELFKAM 259


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/589 (31%), Positives = 310/589 (52%), Gaps = 12/589 (2%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           A+ G   LG  +HA  IK+    DN          ++ N+L++ Y K   + +   LF+ 
Sbjct: 157 AELGDLGLGRQVHAQAIKS----DNGG------HLIVQNALVTMYSKSGSVGDGFALFER 206

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL- 173
           +  +D  SW ++++G  + G        F+  +  G +  ++  F  +  AC     SL 
Sbjct: 207 IRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLE 266

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
             + IH L      +     G +L   Y +C    S  KVF  +   ++++W ++I+   
Sbjct: 267 YGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSWNSLINAFS 326

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
            + L  E + LF +M    + P+ +T ++ + AC G  AL +GR IH  L KL L  D+ 
Sbjct: 327 ADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVKLGLGGDVM 386

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + ++L+ MY++C     A  +F    + D V+   IL    Q+   E+  +LF  +  + 
Sbjct: 387 VCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKLFRLLHSSM 446

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
             +D   ++ VL          + KQ+H+   K    S+  ++N LI+ Y+KCG L+D+ 
Sbjct: 447 PSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAKCGSLDDAN 506

Query: 414 KVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           K+F  M   R+  SW+S+I  +A+ G   +AL+L+  M+  GV+P  VTF+ +L ACS V
Sbjct: 507 KLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFVGVLIACSRV 566

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GLV++G  +   M   + I P  EH +CV+D++ RAG L EA  F+++MP +PD+++W  
Sbjct: 567 GLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPFEPDIIMWNT 626

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL A   H D EMGK AAE +    P   A Y+L+ NIY+ SG W E A+  K M+  GV
Sbjct: 627 LLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARLKKDMRSSGV 686

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            K  G SWI+++ ++  F+V+D+ HP++D ++ +L  +   M+  GY+P
Sbjct: 687 QKSPGKSWIKLKGELKVFIVEDRSHPESDEMYTMLDLIGFEMVKAGYIP 735



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 223/470 (47%), Gaps = 12/470 (2%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T++ N L++ Y +C    +A  +FD M  R+ VSW  +++   +N       G F   L 
Sbjct: 80  TILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 139

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           LG    + A  + + +  +  +L L  + +H           + V NAL+T Y K GS  
Sbjct: 140 LGTAPDEFALGSAVRACAELGDLGL-GRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVG 198

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            G  +F  +R +++ +W ++I+GL Q     + L +F +M   G+ +PN   + S   AC
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 268 S-GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           S  + +L  G QIHG+  K  L  +     +L DMY++C  ++ A ++F   E  D VS 
Sbjct: 259 SVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSW 318

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLII 385
             ++  F+ +G   EAM LF +M  + ++ D   V A+L    G D +L  G+ IHS ++
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCD-ALRQGRSIHSYLV 377

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K     +  V N LI+MY++C D   ++ VF     R+ V+WNS++ A  +H +     +
Sbjct: 378 KLGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFK 437

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  +         ++  ++L A + +G      +      +V  +S      A ++D  
Sbjct: 438 LFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNA-LIDTY 496

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            + G L +A    E M    DV  W +L     I G ++ G YA E L L
Sbjct: 497 AKCGSLDDANKLFEIMGTGRDVFSWSSL-----IVGYAQFG-YAKEALDL 540



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 137/287 (47%), Gaps = 19/287 (6%)

Query: 267 CSGLQALCEGRQIHGILWKLA-----LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           CS L++  +GR +H  L   +     L  +  + + L+ MY +C + + A  +F+   + 
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDR 109

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           + VS   ++   AQN    +AM LF  M++ G   D   + + +        LGLG+Q+H
Sbjct: 110 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVH 169

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           +  IKSD   +  V N L+ MYSK G + D   +F R+  ++  SW S+IA  A+ G   
Sbjct: 170 AQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREM 229

Query: 442 KALELYEEMKLEGV-EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-----PRA 495
            AL ++ EM  EG+  P +  F S+  ACS V      +  L+   ++H +       R 
Sbjct: 230 DALHIFREMIAEGMHHPNEFHFGSVFRACSVV------INSLEYGEQIHGLCVKYKLDRN 283

Query: 496 EHYACVV-DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +  C + DM  R   L  A     R+   PD++ W +L+ A S  G
Sbjct: 284 SYAGCSLGDMYARCNKLDSAMKVFYRIE-SPDLVSWNSLINAFSADG 329



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 12/125 (9%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           + ++ +LS SA+ G+F +   +HA   K            + +  ++ N+L+  Y KC  
Sbjct: 452 ISLNNVLSASAELGYFEMAKQVHAYAFKV----------GLVSDAILSNALIDTYAKCGS 501

Query: 105 MRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163
           + +A KLF+ M   RD  SW++++ G+ + G        F R   LG  + +  +F  +L
Sbjct: 502 LDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGV-KPNHVTFVGVL 560

Query: 164 SACDR 168
            AC R
Sbjct: 561 IACSR 565


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 299/545 (54%), Gaps = 4/545 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  SL++ Y +     +A K+FD M  +D   +N M+  + R G  +     F   L  
Sbjct: 77  VVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINMLNA 136

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  Q +  +FT I+SACD        +    L +  G+  E ++GNA+I  Y K G +  
Sbjct: 137 GL-QPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMARE 195

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             ++F  M  RN+I+WTA+ISG  ++   ++ +  F+++HL  +N +S    + +  CS 
Sbjct: 196 AERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCSE 255

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            + L  G QIHG++ KL     + I +AL+D+Y+KCG++  A  +F+        S   I
Sbjct: 256 CRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASFNAI 315

Query: 330 LVGFAQNGF--EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
           L GF +N    EE+ + LF      GI+ D    S +L +    ++LG G+  H+  IK+
Sbjct: 316 LAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKT 375

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F ++  V N +I MY+KCG +E++ ++F+ M   +S+SWN+MI+A+A HG G K L L+
Sbjct: 376 GFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLF 435

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           EEM  +   P ++T LS+L AC++ GL   G+     M   + I P  EHYAC+VD++GR
Sbjct: 436 EEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIKPLLEHYACMVDLLGR 495

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA   I + P     L+W+ L+  C + GD   GK A++ L    P     YIL+
Sbjct: 496 AGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKYLLELSPVEAGSYILV 555

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+Y+      E AK    M ++ + KE G SWIEI+ +VH FV   K HP+++ I+  L
Sbjct: 556 SNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDDKVHHFVASGKDHPESNEIYAEL 615

Query: 628 AELLR 632
            +LLR
Sbjct: 616 -DLLR 619



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 219/434 (50%), Gaps = 15/434 (3%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M +R+T++W +++ G+L + EF+          + G   L++ + ++IL AC   +  + 
Sbjct: 1   MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSG-EALNEHTCSVILQACSSPDYRIF 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            +  HC V  CG++E V VG +LI  Y +        KVF  M  ++V  +  +I    +
Sbjct: 60  GQQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYAR 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
               E+ +++F+ M    + PN  T+ + + AC G   + EG Q  G+ +K    ++  I
Sbjct: 120 AGNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSI 179

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            +A+++MY K G   +A ++F    + + +S T ++ G+ ++G  ++A+  F+++   G+
Sbjct: 180 GNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGV 239

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D ++++ +L       +L LG QIH L+IK  +     +   L+++Y+KCG+L  +  
Sbjct: 240 NFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARM 299

Query: 415 VFSRMAPRNSVSWNSMIAAF---ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           VF  ++ +   S+N+++A F   +R G     + L+   +L+G++P  VTF  LL   ++
Sbjct: 300 VFDGLSSKRIASFNAILAGFMENSRDGEE-DPIVLFNHFRLDGIKPDMVTFSRLLSLSAN 358

Query: 472 VGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
              + +G  +    +K+  E       A     V+ M  + G + EA      M    D 
Sbjct: 359 HSTLGRGRCYHAYAIKTGFEADLSVANA-----VITMYAKCGSIEEAHRMFNVMN-DHDS 412

Query: 528 LVWQALLGACSIHG 541
           + W A++ A ++HG
Sbjct: 413 ISWNAMISAYALHG 426



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 191/394 (48%), Gaps = 12/394 (3%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           Y   N T I N++++ Y K    R A ++F  M  R+ +SW  ++SG+ R+G+       
Sbjct: 171 YGFLNETSIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDT 230

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F   L L     D +  T IL  C       +   IH LV   GY   V +G AL+  Y 
Sbjct: 231 FME-LHLCGVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYA 289

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL--YEEGLKLFVKMHLGLINPNSLTY 260
           KCG+  S R VF  +  + + ++ A+++G ++N     E+ + LF    L  I P+ +T+
Sbjct: 290 KCGNLMSARMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTF 349

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
              +   +    L  GR  H    K   ++DL + +A++ MY+KCGS+E+A ++F    +
Sbjct: 350 SRLLSLSANHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMND 409

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            D +S   ++  +A +G   + + LF +M+K   E  P+ ++ +L +    T  GL +  
Sbjct: 410 HDSISWNAMISAYALHGQGAKVLLLFEEMIKK--EFAPDEIT-ILSILQACTYSGLFRDG 466

Query: 381 HSL--IIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFA 435
            SL  +++  +   P + +   ++++  + G L +++ + ++    ++++ W +++    
Sbjct: 467 ISLFNVMEPKYGIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCK 526

Query: 436 RHGN-GFKALELYEEMKLEGVEPTDVTFLSLLHA 468
             G+  F  L     ++L  VE      +S ++A
Sbjct: 527 LCGDRNFGKLASKYLLELSPVEAGSYILVSNMYA 560



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 15/146 (10%)

Query: 30  QDPTSSTSKLVLD----NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85
           +DP    +   LD    + V  SRLLS+SA       G   HA  IKT    D       
Sbjct: 328 EDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYAIKTGFEAD------- 380

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
                + N++++ Y KC  +  A ++F+ M   D++SWN M+S +  +G+       F+ 
Sbjct: 381 ---LSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKVLLLFEE 437

Query: 146 SLELGFYQLDQASFTIILSACDRSEL 171
            ++  F   D+ +   IL AC  S L
Sbjct: 438 MIKKEFAP-DEITILSILQACTYSGL 462


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 302/577 (52%), Gaps = 24/577 (4%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           P ++ + +VL      S  L    +   F  G  LH   +K                  +
Sbjct: 117 PAAAQADVVL------SLALKACVRSADFRYGRRLHCDVVKAGGA-----------DGFV 159

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
            NSL+  Y K   + NA K+FD +P R+ VSW +M+SG ++NG  + G   F    E+  
Sbjct: 160 MNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFN---EMRQ 216

Query: 152 YQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             +  + +T++  L+AC         + IH  V   G      +  +L+  Y KC     
Sbjct: 217 DNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVED 276

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+VF E+   +++ WTA+I G  QN+   + L+LF+      I PNS+T  + + A + 
Sbjct: 277 ARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQ 336

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+ L  GR +H I  KL       + +AL+DMY+KC ++ +A  IF      D V+   +
Sbjct: 337 LRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSM 396

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+++NG   E++ LF +M   GI  D   V   L        L +GK  H+  IK  F
Sbjct: 397 MAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAF 456

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            SN +VN  L+N+YSKC DL  + +VF+ M  RNSV+W++MI  +   G+   +++L+ E
Sbjct: 457 MSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNE 516

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  E + P +V F S+L ACSH G+V  G E+  SM     I+P  +HYAC+VD++ RAG
Sbjct: 517 MLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAG 576

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA  FI+ MP+K  + VW + L  C +H   E G+ A +K+    P++P  Y+LM+N
Sbjct: 577 NLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSN 636

Query: 570 IYSCSGRWKERAKAIKR-MKEMGVDKETGISWIEIEK 605
           +Y+  GRW ++++ I+R M+E G+ K  G S +  E 
Sbjct: 637 LYTSYGRW-DKSQTIRRWMQEQGLVKLPGCSSVGHEN 672


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/549 (33%), Positives = 303/549 (55%), Gaps = 7/549 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+S Y+K     +A K+F++MP RD VSWN+M+SG+L  G+       FK  L+ G
Sbjct: 167 VCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG 226

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSS 209
           F + D+ S    L AC       + K IHC       E  +V V  +++  Y K G  S 
Sbjct: 227 F-KPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSY 285

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACS 268
             ++F  M  RN++ W  +I    +N    +    F KM     + P+ +T ++ + A  
Sbjct: 286 AERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPA-- 343

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              A+ EGR IHG   +      + +E+AL+DMY +CG ++ A  IF+   E + +S   
Sbjct: 344 --SAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNS 401

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+  + QNG    A++LF ++  + +  D   ++++L  +    SL  G++IH+ I+KS 
Sbjct: 402 IIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSR 461

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           + SN  + N L++MY+ CGDLED+ K F+ +  ++ VSWNS+I A+A HG G  ++ L+ 
Sbjct: 462 YWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFS 521

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM    V P   TF SLL ACS  G+V++G E+ +SM   + I P  EHY C++D++GR 
Sbjct: 522 EMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRT 581

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G    A+ F+E MP  P   +W +LL A   H D  + ++AAE++F  + D+   Y+L+ 
Sbjct: 582 GNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLL 641

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           N+Y+ +GRW++  +    M+  G+ + +  S +E + + H F   D+ H   + I+ VL 
Sbjct: 642 NMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLD 701

Query: 629 ELLRLMIDE 637
            + R++ +E
Sbjct: 702 VVSRMVGEE 710



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/499 (27%), Positives = 256/499 (51%), Gaps = 23/499 (4%)

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164
           M +A++LFD+M   D   WN M+ GF   G +     F+ R +  G  + D  ++  ++ 
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGV-KADTFTYPFVIK 138

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           +          K IH +V   G+  +V V N+LI+ Y K G +    KVF EM  R++++
Sbjct: 139 SVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVS 198

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W ++ISG +        L LF +M      P+  + +S++ ACS + +   G++IH    
Sbjct: 199 WNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAV 258

Query: 285 KLALQS-DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           +  +++ D+ + ++++DMYSK G V  A +IF    + + V+  V++  +A+NG   +A 
Sbjct: 259 RSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAF 318

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
             F KM +    + P++++++  +    +++  G+ IH   ++  F  +  +   LI+MY
Sbjct: 319 LCFQKMSEQN-GLQPDVITSINLLPA--SAILEGRTIHGYAMRRGFLPHMVLETALIDMY 375

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            +CG L+ +  +F RMA +N +SWNS+IAA+ ++G  + ALEL++E+    + P   T  
Sbjct: 376 GECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA 435

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSF 517
           S+L A +    +++G        E+H    ++ +++       +V M    G L +AR  
Sbjct: 436 SILPAYAESLSLSEG-------REIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKC 488

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCSG 575
              + +K DV+ W +++ A ++HG   +  +   ++  ++  P+      L+A   S SG
Sbjct: 489 FNHILLK-DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAAC-SISG 546

Query: 576 RWKERAKAIKRMK-EMGVD 593
              E  +  + MK E G+D
Sbjct: 547 MVDEGWEYFESMKREYGID 565



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 169/352 (48%), Gaps = 10/352 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++  S+L  Y K  ++  A ++F+ M  R+ V+WN M+  + RNG     F  F++  E 
Sbjct: 268 MVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQ 327

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              Q D  +   +L A       L  + IH      G+   + +  ALI  Y +CG   S
Sbjct: 328 NGLQPDVITSINLLPA----SAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKS 383

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F  M  +NVI+W ++I+  VQN      L+LF ++    + P+S T  S + A + 
Sbjct: 384 AEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAE 443

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             +L EGR+IH  + K    S+  I ++L+ MY+ CG +EDA + F      D VS   I
Sbjct: 444 SLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSI 503

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++ +A +GF   ++ LF +M+ + +  + +  +++L    +   +  G +     +K ++
Sbjct: 504 IMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFE-SMKREY 562

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRM--APRNSVSWNSMIAAFARH 437
             +P + +   ++++  + G+   + +    M   P   + W S++ A   H
Sbjct: 563 GIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARI-WGSLLNASRNH 613



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 50/267 (18%)

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV--------------------------- 347
           ++  ++++  ++T  L GFA +   E+A+QLF                            
Sbjct: 56  YKVTKQVNDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAV 115

Query: 348 ----KMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
               +MV AG++ D    P ++ +V G+    +SL  GK+IH+++IK  F S+ +V N L
Sbjct: 116 QFYSRMVFAGVKADTFTYPFVIKSVAGI----SSLEEGKKIHAMVIKLGFVSDVYVCNSL 171

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           I++Y K G   D+ KVF  M  R+ VSWNSMI+ +   G+GF +L L++EM   G +P  
Sbjct: 172 ISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDR 231

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH-----YACVVDMVGRAGLLIEA 514
            + +S L ACSHV     G E        H +  R E         ++DM  + G +  A
Sbjct: 232 FSTMSALGACSHVYSPKMGKEI-----HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYA 286

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG 541
                 M ++ +++ W  ++G  + +G
Sbjct: 287 ERIFNGM-IQRNIVAWNVMIGCYARNG 312



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 21/135 (15%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           P S+T   +L  Y +     S+S  EG       +HA  +K+             + T+I
Sbjct: 429 PDSTTIASILPAYAE-----SLSLSEGR-----EIHAYIVKS----------RYWSNTII 468

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
            NSL+  Y  C  + +A K F+ + ++D VSWN+++  +  +G   +    F   +    
Sbjct: 469 LNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIA-SR 527

Query: 152 YQLDQASFTIILSAC 166
              ++++F  +L+AC
Sbjct: 528 VNPNKSTFASLLAAC 542


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/605 (30%), Positives = 325/605 (53%), Gaps = 22/605 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L+S+ A   HF  G  +H+  +++          ++ ++  + N+L++ Y    ++ +A 
Sbjct: 252 LMSVCASSDHFSHGSGIHSLCLRS----------SLDSSVTVINALVNMYSAAGKLSDAE 301

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY---QLDQASFTIILSAC 166
            LF +M  RD +SWNTM+S +++N           ++L   F+     +  +F+  L AC
Sbjct: 302 FLFWNMSRRDLISWNTMISSYVQNCNSTDAL----KTLGQLFHTNESPNHLTFSSALGAC 357

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                 +  KM+H +V     +  + VGN+LIT Y KC S     KVF  M   +++++ 
Sbjct: 358 SSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYN 417

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS---SVMACSGLQALCEGRQIHGIL 283
            +I G    +   + +++F  M    I PN +T ++   S  + + L     GR +H  +
Sbjct: 418 VLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNY--GRPLHAYI 475

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            +    SD  + ++L+ MY+KCG++E +  IF      + VS   I+    Q G  EEA+
Sbjct: 476 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEAL 535

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +LF+ M  AG ++D   ++  L       SL  G Q+H L +KS   S+ +V N  ++MY
Sbjct: 536 KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMY 595

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG +++ ++V    A R    WN++I+ +A++G   +A E +++M   G +P  VTF+
Sbjct: 596 GKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFV 655

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           +LL ACSH GLV+KG+++  SM     +SP  +H  C+VD++GR G   EA  FIE MPV
Sbjct: 656 ALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPV 715

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            P+ L+W++LL +   H + E+G+  A+KL    P   + Y+L++N+Y+ + RW +  K 
Sbjct: 716 LPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKL 775

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
              MK + ++K    SW++++ +V +F + D+ H  A+ I+  L E+L  + + GY+ + 
Sbjct: 776 RSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADT 835

Query: 644 RFILH 648
              LH
Sbjct: 836 SSALH 840



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 253/498 (50%), Gaps = 13/498 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V  + N   + NSL++ +    ++ +A KLFD M   DT+SWN M+S +   G     F 
Sbjct: 173 VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 232

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F      G  + D  +   ++S C  S+       IH L      +  VTV NAL+  Y
Sbjct: 233 VFSDMRHHGL-RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 291

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
              G  S    +F  M  R++I+W  +IS  VQN    + LK   ++     +PN LT+ 
Sbjct: 292 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFS 351

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ ACS   AL +G+ +H I+ +L+LQ +L + ++L+ MY KC S+EDA ++F+     
Sbjct: 352 SALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH 411

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA--VLGVFGVDTSL-GLGK 378
           D VS  V++ G+A      +AMQ+F  M  AGI+  PN ++   + G F     L   G+
Sbjct: 412 DIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK--PNYITMINIHGSFASSNDLHNYGR 469

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            +H+ II++ F S+ +V N LI MY+KCG+LE S  +F+ +  +N VSWN++IAA  + G
Sbjct: 470 PLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLG 529

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +G +AL+L+ +M+  G +   V     L +C+ +  + +GM+ L  +     +   +   
Sbjct: 530 HGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQ-LHGLGMKSGLDSDSYVV 588

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE--KLFLA 556
              +DM G+ G + E    +    ++P    W  L+   + +G     K A E  K  +A
Sbjct: 589 NAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYG---YFKEAEETFKQMVA 644

Query: 557 QPDSPAPYILMANIYSCS 574
               P     +A + +CS
Sbjct: 645 TGRKPDYVTFVALLSACS 662



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 217/465 (46%), Gaps = 18/465 (3%)

Query: 115 MPMRDTVSWNTMVSGFLRNGE----FDMGFGFFKRSLELGFYQLDQASFTIILSACDR-- 168
           M  R   +W T VSG +R G     F+M  G  +R + L  + L       +++AC+R  
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALAS-----LVTACERRG 55

Query: 169 -SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             E       IH L +  G    V +G AL+  Y   G  S  +++F EM  RNV++WTA
Sbjct: 56  RDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTA 115

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           ++  L  N   EE L+ + +M    +  N+  + + V  C  L+    G Q+   +    
Sbjct: 116 LMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSG 175

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           LQ+ + + ++L+ M+   G V DA ++F+  EE D +S   ++  ++  G   +   +F 
Sbjct: 176 LQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFS 235

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
            M   G+  D   + +++ V         G  IHSL ++S   S+  V N L+NMYS  G
Sbjct: 236 DMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAG 295

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            L D+  +F  M+ R+ +SWN+MI+++ ++ N   AL+   ++      P  +TF S L 
Sbjct: 296 KLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALG 355

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           ACS  G +  G + + ++     +         ++ M G+   + +A    + MP   D+
Sbjct: 356 ACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DI 413

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANIY 571
           + +  L+G  ++  D   G  A +     +     P YI M NI+
Sbjct: 414 VSYNVLIGGYAVLED---GTKAMQVFSWMRSAGIKPNYITMINIH 455



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 178/375 (47%), Gaps = 1/375 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I  +LL  Y     + +A +LF +MP R+ VSW  ++     NG  +     +++    G
Sbjct: 81  IGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDG 140

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  +F  ++S C   E  +    +   V + G + +V+V N+LIT +   G     
Sbjct: 141 V-PCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDA 199

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M   + I+W A+IS      +  +   +F  M    + P++ T  S +  C+  
Sbjct: 200 EKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASS 259

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                G  IH +  + +L S + + +AL++MYS  G + DA  +F      D +S   ++
Sbjct: 260 DHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMI 319

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + QN    +A++   ++       +    S+ LG      +L  GK +H+++++    
Sbjct: 320 SSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 379

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            N  V N LI MY KC  +ED+ KVF  M   + VS+N +I  +A   +G KA++++  M
Sbjct: 380 RNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWM 439

Query: 451 KLEGVEPTDVTFLSL 465
           +  G++P  +T +++
Sbjct: 440 RSAGIKPNYITMINI 454


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 304/553 (54%), Gaps = 6/553 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD M + D +SWN M++G   NGE + G   F   L   
Sbjct: 226 VLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLH-D 284

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q +  + T +  A         +K +H L    G+  +V   N+LI  Y   G     
Sbjct: 285 EVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQA 344

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  R+ +TWTA+ISG  +N   ++ L+++  M +  ++P+ +T  S++ AC+ L
Sbjct: 345 RTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACL 404

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  G ++H +       S + + +A+++MY+K   ++ A ++F+   E D VS + ++
Sbjct: 405 GSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMI 464

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSD 388
            GF  N    EA+  F  M+    ++ PN V+ +  +     +  L  GK+IH+ +++  
Sbjct: 465 AGFCFNHRNFEALYYFRHMLA---DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCG 521

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                ++ N LI++Y KCG    +   F     ++ VSWN MIA F  HG+G  AL  + 
Sbjct: 522 IEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFN 581

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G  P +VTF++LL ACS  G+V++G E   SMTE + I P  +HYAC+VD++ RA
Sbjct: 582 QMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRA 641

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA +FI  MP+ PD  VW ALL  C IH   E+G+ AA+ +   +P+    ++L+ 
Sbjct: 642 GQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLC 701

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +  W + A+  K M+E G+D ++G SW+E++  VH+F+ DD+ HPQ   I+ VL 
Sbjct: 702 DLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLE 761

Query: 629 ELLRLMIDEGYVP 641
            +   M   GY P
Sbjct: 762 GIYERMKASGYAP 774



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 195/371 (52%), Gaps = 2/371 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++LS  ++  +  +A ++F  MP RD  SWN MV G+ ++G  D     + R +  G  
Sbjct: 127 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGV- 185

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L +C       + + +H  V   G+ EEV V NAL+T Y KCG   + RK
Sbjct: 186 RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARK 245

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M V + I+W A+I+G  +N     GL+LF+ M    + PN +T  S  +A   L  
Sbjct: 246 VFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSD 305

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   +++HG+  K     D+   ++L+ MY+  G +  A  +F   +  D ++ T ++ G
Sbjct: 306 VTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISG 365

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NGF ++A++++  M    +  D   +++ L       SL +G ++H L     F S 
Sbjct: 366 YEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISY 425

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N ++ MY+K   ++ +I+VF  M  ++ VSW+SMIA F  +   F+AL  +  M L
Sbjct: 426 IVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-L 484

Query: 453 EGVEPTDVTFL 463
             V+P  VTF+
Sbjct: 485 ADVKPNSVTFI 495



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 196/373 (52%), Gaps = 7/373 (1%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + +GNA+++   + G +    +VF +M  R+V +W  ++ G  ++ L +E L L+ +M  
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             + P+  T+   + +C G+     GR++H  + +     ++ + +ALM MY+KCG V  
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMA 242

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVF 368
           A ++F+    +D +S   ++ G  +NG     ++LF+ M+    E+ PN+  +++V    
Sbjct: 243 ARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHD--EVQPNLMTITSVTVAS 300

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G+ + +   K++H L +K  F  +    N LI MY+  G +  +  VFSRM  R++++W 
Sbjct: 301 GLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWT 360

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           +MI+ + ++G   KALE+Y  M++  V P D+T  S L AC+ +G ++ G++ L  + E 
Sbjct: 361 AMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAES 419

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GACSIHGDSEMGK 547
                       +++M  ++  + +A    + M  K DV+ W +++ G C  H + E   
Sbjct: 420 KGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEK-DVVSWSSMIAGFCFNHRNFEALY 478

Query: 548 YAAEKLFLAQPDS 560
           Y    L   +P+S
Sbjct: 479 YFRHMLADVKPNS 491



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N++L  Y K  ++  A+++F  M  +D VSW++M++GF  N        +F+    L
Sbjct: 427 VVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM--L 484

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + +  +F   L+AC  +      K IH  V  CG E E  + NALI  Y KCG +  
Sbjct: 485 ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGY 544

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F     ++V++W  +I+G V +   +  L  F +M      P+ +T+++ + ACS 
Sbjct: 545 AWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSR 604

Query: 270 LQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
              + EG ++ H +  K ++  +L   + ++D+ S+ G + +A+ 
Sbjct: 605 GGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYN 649


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 185/605 (30%), Positives = 325/605 (53%), Gaps = 22/605 (3%)

Query: 50   LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            L+S+ A   HF  G  +H+  +++          ++ ++  + N+L++ Y    ++ +A 
Sbjct: 554  LMSVCASSDHFSHGSGIHSLCLRS----------SLDSSVTVINALVNMYSAAGKLSDAE 603

Query: 110  KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY---QLDQASFTIILSAC 166
             LF +M  RD +SWNTM+S +++N           ++L   F+     +  +F+  L AC
Sbjct: 604  FLFWNMSRRDLISWNTMISSYVQNCNSTDAL----KTLGQLFHTNESPNHLTFSSALGAC 659

Query: 167  DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  +  KM+H +V     +  + VGN+LIT Y KC S     KVF  M   +++++ 
Sbjct: 660  SSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYN 719

Query: 227  AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS---SVMACSGLQALCEGRQIHGIL 283
             +I G    +   + +++F  M    I PN +T ++   S  + + L     GR +H  +
Sbjct: 720  VLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNY--GRPLHAYI 777

Query: 284  WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
             +    SD  + ++L+ MY+KCG++E +  IF      + VS   I+    Q G  EEA+
Sbjct: 778  IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEAL 837

Query: 344  QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            +LF+ M  AG ++D   ++  L       SL  G Q+H L +KS   S+ +V N  ++MY
Sbjct: 838  KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMY 897

Query: 404  SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
             KCG +++ ++V    A R    WN++I+ +A++G   +A E +++M   G +P  VTF+
Sbjct: 898  GKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFV 957

Query: 464  SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +LL ACSH GLV+KG+++  SM     +SP  +H  C+VD++GR G   EA  FIE MPV
Sbjct: 958  ALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPV 1017

Query: 524  KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             P+ L+W++LL +   H + E+G+  A+KL    P   + Y+L++N+Y+ + RW +  K 
Sbjct: 1018 LPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKL 1077

Query: 584  IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
               MK + ++K    SW++++ +V +F + D+ H  A+ I+  L E+L  + + GY+ + 
Sbjct: 1078 RSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADT 1137

Query: 644  RFILH 648
               LH
Sbjct: 1138 SSALH 1142



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 240/463 (51%), Gaps = 8/463 (1%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V  + N   + NSL++ +    ++ +A KLFD M   DT+SWN M+S +   G     F 
Sbjct: 475 VSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 534

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F      G  + D  +   ++S C  S+       IH L      +  VTV NAL+  Y
Sbjct: 535 VFSDMRHHGL-RPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 593

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
              G  S    +F  M  R++I+W  +IS  VQN    + LK   ++     +PN LT+ 
Sbjct: 594 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFS 653

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S++ ACS   AL +G+ +H I+ +L+LQ +L + ++L+ MY KC S+EDA ++F+     
Sbjct: 654 SALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH 713

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA--VLGVFGVDTSL-GLGK 378
           D VS  V++ G+A      +AMQ+F  M  AGI+  PN ++   + G F     L   G+
Sbjct: 714 DIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIK--PNYITMINIHGSFASSNDLHNYGR 771

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
            +H+ II++ F S+ +V N LI MY+KCG+LE S  +F+ +  +N VSWN++IAA  + G
Sbjct: 772 PLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLG 831

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +G +AL+L+ +M+  G +   V     L +C+ +  + +GM+ L  +     +   +   
Sbjct: 832 HGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQ-LHGLGMKSGLDSDSYVV 890

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              +DM G+ G + E    +    ++P    W  L+   + +G
Sbjct: 891 NAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYG 932



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 227/486 (46%), Gaps = 13/486 (2%)

Query: 93  NSLLSFYLK---CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           N+LL+FY +         A+ LFD+M  R   +W T VSG +R G     F   +   E 
Sbjct: 278 NTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREP 337

Query: 150 GFYQLDQASFTIILSACDR---SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           G   L   +   +++AC+R    E       IH L +  G    V +G AL+  Y   G 
Sbjct: 338 GV-PLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGI 396

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
            S  +++F EM  RNV++WTA++  L  N   EE L+ + +M    +  N+  + + V  
Sbjct: 397 VSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSL 456

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L+    G Q+   +    LQ+ + + ++L+ M+   G V DA ++F+  EE D +S 
Sbjct: 457 CGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISW 516

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++  ++  G   +   +F  M   G+  D   + +++ V         G  IHSL ++
Sbjct: 517 NAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLR 576

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           S   S+  V N L+NMYS  G L D+  +F  M+ R+ +SWN+MI+++ ++ N   AL+ 
Sbjct: 577 SSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKT 636

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             ++      P  +TF S L ACS  G +  G + + ++     +         ++ M G
Sbjct: 637 LGQLFHTNESPNHLTFSSALGACSSPGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYG 695

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YI 565
           +   + +A    + MP   D++ +  L+G  ++  D   G  A +     +     P YI
Sbjct: 696 KCNSMEDAEKVFQSMPTH-DIVSYNVLIGGYAVLED---GTKAMQVFSWMRSAGIKPNYI 751

Query: 566 LMANIY 571
            M NI+
Sbjct: 752 TMINIH 757



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 178/375 (47%), Gaps = 1/375 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I  +LL  Y     + +A +LF +MP R+ VSW  ++     NG  +     +++    G
Sbjct: 383 IGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDG 442

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  +F  ++S C   E  +    +   V + G + +V+V N+LIT +   G     
Sbjct: 443 V-PCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDA 501

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M   + I+W A+IS      +  +   +F  M    + P++ T  S +  C+  
Sbjct: 502 EKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASS 561

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                G  IH +  + +L S + + +AL++MYS  G + DA  +F      D +S   ++
Sbjct: 562 DHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMI 621

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + QN    +A++   ++       +    S+ LG      +L  GK +H+++++    
Sbjct: 622 SSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQ 681

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            N  V N LI MY KC  +ED+ KVF  M   + VS+N +I  +A   +G KA++++  M
Sbjct: 682 RNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWM 741

Query: 451 KLEGVEPTDVTFLSL 465
           +  G++P  +T +++
Sbjct: 742 RSAGIKPNYITMINI 756



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 15/116 (12%)

Query: 93  NSLLSFYLK---CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE----FDMGFGFFKR 145
           N+LL+FY +         A+ LFD+M  R   +W T VSG +R G     F+M  G  +R
Sbjct: 55  NTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRER 114

Query: 146 SLELGFYQLDQASFTIILSACD---RSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198
            + L  + L       +++AC+   R E       IH L +  G    V +G AL+
Sbjct: 115 GVPLSGFALAS-----LVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGRALL 165


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/590 (31%), Positives = 303/590 (51%), Gaps = 36/590 (6%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           S+L F+++  +  +A  +FD+ P R    W   +SG  R G +  G   F   L  G   
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            +      ++  C         K +H  +   G   +V + NA++  Y KCG     R+V
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 214 FGEMRVRNVITWTAVISGLVQN-------QLYEE------------------------GL 242
           FG M  R+ ++W   I   +Q+       QL++E                         L
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADAL 229

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQSDLCIESALMDM 301
               +M    +  N  TY S+    +G+  L + GRQ+HG +   AL+ D  + S+LMDM
Sbjct: 230 SHLRRMAQAGVVFNHYTY-STAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDM 288

Query: 302 YSKCGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           Y KCG +E A  +F+    L      + + ++ G+ QNG EEEA+ LF +M++ G+  D 
Sbjct: 289 YCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADR 348

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             +++V         +  G+Q+H  + K  +  +  + + +++MY+KCG+LED+  +F R
Sbjct: 349 FTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDR 408

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
              +N   W SM+ ++A HG G  A+EL+E M  E + P ++T + +L ACSHVGLV++G
Sbjct: 409 ACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEG 468

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             + K M E + I P  EHY C+VD+ GR+GLL +A++FIE   +  + +VW+ LL AC 
Sbjct: 469 ELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACR 528

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +H  +E  K A+EKL   +      Y++++NIY+ + +W +  +    M+E  V K+ G 
Sbjct: 529 LHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGR 588

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SWI ++  VH+FV  D  HPQ+  I+  L +L+  + + GY      ++H
Sbjct: 589 SWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVH 638



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 194/390 (49%), Gaps = 15/390 (3%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            V WN  +   ++   +  +++LFD+ P+RDT SWNT++SG +R+G         +R  +
Sbjct: 178 AVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQ 237

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    +  +++          L  + + +H  V +   E +  V ++L+  Y KCG   
Sbjct: 238 AGVV-FNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLE 296

Query: 209 SGRKVFGEMR--VRNV-ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           +   VF       R++   W+ +++G VQN   EE L LF +M    +  +  T  S   
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAA 356

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ +  + +GRQ+HG + KL  + D  + SA++DMY+KCG++EDA  IF+ A   +   
Sbjct: 357 ACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSL 383
            T +L  +A +G    A++LF +M     ++ PN ++ V GV    + +GL    +++  
Sbjct: 417 WTSMLCSYASHGQGRIAIELFERMTAE--KMTPNEITLV-GVLSACSHVGLVSEGELYFK 473

Query: 384 IIKSDFTSNPFVN--NGLINMYSKCGDLEDSIKVFSRMAPRN--SVSWNSMIAAFARHG- 438
            ++ ++   P +   N ++++Y + G L D  K F      N  ++ W ++++A   H  
Sbjct: 474 QMQEEYGIVPSIEHYNCIVDLYGRSG-LLDKAKNFIEENNINHEAIVWKTLLSACRLHQH 532

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           N +  L   + ++LE  +      LS ++A
Sbjct: 533 NEYAKLASEKLVQLEQCDAGSYVMLSNIYA 562


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 302/553 (54%), Gaps = 7/553 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN-GEFDMGFGFFKRSLELGF 151
           N LLS  +    +  A  +F+ +   +  ++N M+ G      ++D     + +   LG 
Sbjct: 65  NFLLSKIIDLKDLAYASLVFNQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGL 124

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            + +  ++  +  AC      +  K+ HCLV+  G + +  V ++LIT Y +CG     R
Sbjct: 125 -KANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFAR 183

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           KVF EM  R++++W ++ISG  +    +E + LF++M      P+ +T +S + AC  L 
Sbjct: 184 KVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLG 243

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            L  GR + G + +  ++ +  + SAL+DMY KCG +  A ++F+     D V+   I+ 
Sbjct: 244 DLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIIT 303

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+AQNG   EA+ LF  M +AG   D   +  VL       +L LGK + +   +     
Sbjct: 304 GYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQH 363

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + +V + LI+MY+KCG L+D+++VF  M  +N VSWN+MI+A A HG   +AL L+  M 
Sbjct: 364 DVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMS 423

Query: 452 LEG--VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
            +   V+P D+TF+ +L AC H GLV++G +  +SM     + P+ EHY+C+VD+  RAG
Sbjct: 424 KDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAG 483

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
           LL EA   I++MP KPD +V  +LLGAC    ++++G+   +     +  +   Y++ + 
Sbjct: 484 LLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSK 543

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+   RW + AK    M++ GV K  G SWI+I   VH F   D +H  +  I+ +L E
Sbjct: 544 IYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQLLNE 603

Query: 630 LLRLMIDEGYVPN 642
            ++    EGY+PN
Sbjct: 604 EMK---REGYIPN 613


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 280/534 (52%), Gaps = 9/534 (1%)

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII----LSACDRSELSLVSK 176
           VS+   +SG  ++         F   L +G    D   FT       +AC     S V  
Sbjct: 77  VSFTAFISGAAQHARPLAALSAFAAMLRVGLRPND---FTFPSAFKAAACAPPRCSTVGP 133

Query: 177 MIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
            IH L    GY   +  V  A +  YFK G     R++F EM  RNVI W AV++  V +
Sbjct: 134 QIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVID 193

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
               E  K +  +      PN ++  +   AC+G   L  G Q HG +       D+ + 
Sbjct: 194 GRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVS 253

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +A++D Y KC     A  +F+     + VS   ++V +AQ+G EE+A+ +++     G E
Sbjct: 254 NAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEE 313

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
               MVS+VL        L  G+ +H++ ++S   +N FV + L++MY KCG +ED+ +V
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGL 474
           F  M  RN V+WN+MI  +A  G+   AL +++ M +  G  P  +T ++++ ACS  GL
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGL 433

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
              G E   +M E   + PR EHYACVVD++GRAG+   A   I+RMP++P + VW ALL
Sbjct: 434 TKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALL 493

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
           GAC +HG +E+G+ A+EKLF   P     ++L++N+ + +GRW E     K MK +G+ K
Sbjct: 494 GACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKK 553

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           E G SWI  +  VH F   D  H +   I  +LA+L + M   GY+P+ ++ L+
Sbjct: 554 EPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLY 607


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 297/559 (53%), Gaps = 4/559 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPM--RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
            +LL  Y KC  +  A  LF+ +    RD V+WN M++ F  +           +  + G
Sbjct: 146 TALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG 205

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               + ++   IL    ++      K IH       + + V +  AL+  Y KC      
Sbjct: 206 VTP-NSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYA 264

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSG 269
           RK+F  +  +N + W+A+I G V +    + L L+  M  +  +NP   T  + + AC+ 
Sbjct: 265 RKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQ 324

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G+++H  + K  +  D  + ++L+ MY+KCG +++A    +     D VS + I
Sbjct: 325 LTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAI 384

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G  QNG+ E+A+ +F +M  +GI      + A+L       +L  G   H   +   F
Sbjct: 385 ISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGF 444

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           T++  + N +I+MYSKCG +  S ++F RM  R+ +SWN+MI  +  HG   +AL L++E
Sbjct: 445 TNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQE 504

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           ++  G++P DVT +++L ACSH GLV +G  +  SM++   I PR  HY C+VD++ RAG
Sbjct: 505 LQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAG 564

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA +FI+RMP  P+V +W ALL AC  H + EMG+  ++K+ L  P+    ++LM+N
Sbjct: 565 NLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSN 624

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IYS  GRW + A      +  G  K  G SW+EI   +H F+   + HPQ+ +I+  L E
Sbjct: 625 IYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQE 684

Query: 630 LLRLMIDEGYVPNKRFILH 648
           LL  M   GY  +  F+LH
Sbjct: 685 LLVQMKKLGYRADSSFVLH 703



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 235/474 (49%), Gaps = 8/474 (1%)

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           I++F P  + + + V ++      L  +++  ++++ A  +FD +P    V WN M+  +
Sbjct: 25  IRSFSP--HPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTY 82

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
             +G F      +   L+LG    +  +F  +L AC   +   + ++IH   ++ G   +
Sbjct: 83  AWSGPFQQSIYLYLHMLQLGVTPTN-FTFPFLLKACSSLQALQLGRLIHTHAHILGLSMD 141

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEM--RVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           + V  AL+  Y KCG     + +F  +  + R+++ W A+I+    + L+ + +    +M
Sbjct: 142 LYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQM 201

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
               + PNS T +S +       AL +G+ IH    +     ++ +++AL+DMY+KC  +
Sbjct: 202 QQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLL 261

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGV 367
             A +IF    + + V  + ++ G+  +    +A+ L+  M+   G+   P  ++ +L  
Sbjct: 262 FYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRA 321

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
               T L  GK++H  +IKS    +  V N LI+MY+KCG +++++     M  +++VS+
Sbjct: 322 CAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSY 381

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           +++I+   ++G   KAL ++ +M+  G+ P   T ++LL ACSH+  +  G       T 
Sbjct: 382 SAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHG-TCCHGYTV 440

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           V   +        ++DM  + G +  +R   +RM  + D++ W  ++    IHG
Sbjct: 441 VRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNR-DIISWNTMIIGYGIHG 493



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 204/422 (48%), Gaps = 14/422 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N   +  +L    +    H G ++HA +I+ F  FDN          V+  +LL  Y
Sbjct: 206 VTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFF-FDN---------VVLQTALLDMY 255

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  +  A K+F+ +  ++ V W+ M+ G++ +         +   L +       A+ 
Sbjct: 256 AKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATL 315

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC +       K +HC +   G + + TVGN+LI+ Y KCG   +      EM  
Sbjct: 316 ATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIA 375

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++ ++++A+ISG VQN   E+ L +F +M    I P   T ++ + ACS L AL  G   
Sbjct: 376 KDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCC 435

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG        +D  I +A++DMYSKCG +  + +IF+  +  D +S   +++G+  +G  
Sbjct: 436 HGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLC 495

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397
            EA+ LF ++   G++ D   + AVL        +  GK   S  +  +F   P + +  
Sbjct: 496 VEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFS-SMSQNFNIKPRMAHYI 554

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            ++++ ++ G+L+++     RM    +V  W +++AA   H N     ++ ++++L G E
Sbjct: 555 CMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPE 614

Query: 457 PT 458
            T
Sbjct: 615 GT 616



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 188/374 (50%), Gaps = 18/374 (4%)

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF ++   +V+ W  +I     +  +++ + L++ M    + P + T+   + ACS 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE--FAEELDGVSMT 327
           LQAL  GR IH     L L  DL + +AL+ MY+KCG +  A  +F     ++ D V+  
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  F+ +    + +    +M +AG+  + + + ++L   G   +L  GK IH+  I++
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F  N  +   L++MY+KC  L  + K+F+ +  +N V W++MI  +  H +   AL LY
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 448 EEMK-LEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVV 502
           ++M  + G+ PT  T  ++L AC+ +  + +G +     +KS  ++      +     ++
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNS-----LI 354

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
            M  + G++  A  F++ M  K D + + A++  C  +G +E       ++   Q    A
Sbjct: 355 SMYAKCGIMDNAVGFLDEMIAK-DTVSYSAIISGCVQNGYAEKALLIFRQM---QSSGIA 410

Query: 563 PYI--LMANIYSCS 574
           PY+  ++A + +CS
Sbjct: 411 PYLETMIALLPACS 424


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/585 (31%), Positives = 302/585 (51%), Gaps = 71/585 (12%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N+L++ Y  C  + +A K+FD   + D VSWN+M++G++  G  +     + R     
Sbjct: 163 IQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM---- 218

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                                                E  V   N++I  + K G+    
Sbjct: 219 ------------------------------------PERNVIASNSMIVLFGKKGNVEEA 242

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F EM+ +++++W+A+IS   QN++YEE L LF +M+   I  + +  LS + ACS L
Sbjct: 243 CKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRL 302

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYS--------------------------- 303
             +  G+ +HG++ K+ +++ + +++AL+ MYS                           
Sbjct: 303 LVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMI 362

Query: 304 ----KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
               KCG +E A  +F+   + D VS + ++ G+AQ     E + LF +M   G + D  
Sbjct: 363 SGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDET 422

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           ++ +V+       +L  GK IH+ I K+    N  +   LINMY K G +ED+++VF  +
Sbjct: 423 ILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGL 482

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             +   +WN++I   A +G   K+L+ + EMK  GV P ++TF+++L AC H+GLV++G 
Sbjct: 483 EEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGH 542

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
               SM + H+I P  +HY C+VD++GRAG+L EA   IE MP+ PDV  W ALLGAC  
Sbjct: 543 RHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKK 602

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           +GD+E G+    KL    PD     +L++NIY+  G W +  +    M++ GV K  G S
Sbjct: 603 YGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCS 662

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
            IE   +VH F+  DK HPQ + I  +L E+ + +  EGY P+ R
Sbjct: 663 MIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTR 707



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 206/430 (47%), Gaps = 49/430 (11%)

Query: 65  SLHASFIKTFEPFDNQNVYN-VPNATVIW-NSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           S+ A ++      + ++VY+ +P   VI  NS++  + K   +  A KLF++M  +D VS
Sbjct: 197 SMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS 256

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W+ ++S + +N  ++     FK     G   +D+     +LSAC R  + +  K++H LV
Sbjct: 257 WSALISCYEQNEMYEEALILFKEMNANGI-MVDEVVVLSVLSACSRLLVVITGKLVHGLV 315

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV--------- 233
              G E  V + NALI  Y  C    + +K+F E    + I+W ++ISG V         
Sbjct: 316 VKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKAR 375

Query: 234 ----------------------QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
                                 Q   + E L LF +M +    P+    +S + AC+ L 
Sbjct: 376 ALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLA 435

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G+ IH  + K  L+ ++ + + L++MY K G VEDA ++F+  EE    +   +++
Sbjct: 436 ALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALIL 495

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH----SLIIKS 387
           G A NG  +++++ F +M + G  + PN ++ V  V G    +GL  + H    S+I + 
Sbjct: 496 GLAMNGLVDKSLKTFSEMKEHG--VTPNEITFV-AVLGACRHMGLVDEGHRHFNSMIQEH 552

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN------- 439
               N      ++++  + G L+++ ++   M     VS W +++ A  ++G+       
Sbjct: 553 KIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERI 612

Query: 440 GFKALELYEE 449
           G K +EL+ +
Sbjct: 613 GRKLVELHPD 622



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 73/387 (18%)

Query: 124 NTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVY 183
           NTM+ G+++          +K  LE      D  ++ I+  +C         K I   V 
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNV-AADNYTYPILFQSCSIRLAEFDGKCIQDHVL 153

Query: 184 LCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243
             G++ +V + N LI  Y  CG+ S  RKVF    V ++++W ++++G V     EE   
Sbjct: 154 KVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKD 213

Query: 244 LFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           ++ +M    +I  NS+  L                                        +
Sbjct: 214 VYDRMPERNVIASNSMIVL----------------------------------------F 233

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            K G+VE+A ++F   ++ D VS + ++  + QN   EEA+ LF +M   GI +D  +V 
Sbjct: 234 GKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVL 293

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS------------------ 404
           +VL        +  GK +H L++K    +   + N LI+MYS                  
Sbjct: 294 SVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCL 353

Query: 405 -------------KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
                        KCG++E +  +F  M  +++VSW++MI+ +A+     + L L++EM+
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +EG +P +   +S++ AC+H+  +++G
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQG 440



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 179/408 (43%), Gaps = 88/408 (21%)

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++F  +   N      ++ G +Q     + + ++  M    +  ++ TY     +CS   
Sbjct: 81  QIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRL 140

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           A  +G+ I   + K+   SD+ I++ L++MY+ CG++ DA ++F+ +  LD VS   +L 
Sbjct: 141 AEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLA 200

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+   G  EEA  ++ +M +                                        
Sbjct: 201 GYVLVGNVEEAKDVYDRMPE---------------------------------------R 221

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N   +N +I ++ K G++E++ K+F+ M  ++ VSW+++I+ + ++    +AL L++EM 
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 452 LEGVEPTDVTFLSLLHACSHV----------GLVNK-GMEFLKSMTE--VHRISPRAE-- 496
             G+   +V  LS+L ACS +          GLV K G+E   ++    +H  S   E  
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 497 ------HYACVVDMVG---------RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                   +C +D +          + G + +AR+  + MP K +V  W A+     I G
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNV-SWSAM-----ISG 395

Query: 542 DSEMGKYAAEKLFLAQP-----DSPAPYILMANIYSCS-------GRW 577
            ++  ++  E L L Q        P   IL++ I +C+       G+W
Sbjct: 396 YAQQDRF-TETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKW 442



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 76/144 (52%)

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
           ++  ++QIF   E  +G     ++ G+ Q     +A+ ++  M+++ +  D      +  
Sbjct: 75  NINQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
              +  +   GK I   ++K  F S+ ++ N LINMY+ CG+L D+ KVF   +  + VS
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 427 WNSMIAAFARHGNGFKALELYEEM 450
           WNSM+A +   GN  +A ++Y+ M
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRM 218


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/568 (32%), Positives = 305/568 (53%), Gaps = 12/568 (2%)

Query: 79  NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM 138
           N   +N  + T +   L+  Y        A  LFD+MP RD ++W +M++G+        
Sbjct: 31  NDTPFNPKDLTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSR 90

Query: 139 GFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGN 195
            +  F   L  G   +   +FT+  +L AC   +  L  K++H L    G +   + V N
Sbjct: 91  AWNVFTNMLRDG---VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDN 147

Query: 196 ALITSYFKCGSS-SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GL 252
           AL+  Y  C  S  + R VF ++  +N ++WT +I+G    +    GL++F +M +  G 
Sbjct: 148 ALMDMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGE 207

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           ++P S +   +V AC+ + +   G+Q+H  +     +S+L + +A++DMY +C    +A 
Sbjct: 208 LSPFSFSI--AVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAK 265

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           Q+F    + D ++   ++ GF +     E++ +F +MV  G   +    ++V+       
Sbjct: 266 QLFGEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLA 324

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L  G+Q+H  II     +N  ++N LI+MY+KCG++ DS K+FS M   N VSW SM+ 
Sbjct: 325 ILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMI 384

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            +  HG+G +A++L+ EM   G++P  + F+++L ACSH GLV++G+ + + MT  + ++
Sbjct: 385 GYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVA 444

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P  + YACVVD++ RAG + EA   IE MP KPD  +W ALLGAC  +    + K AA K
Sbjct: 445 PDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALK 504

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           +   +P+    Y+L++N  +  G W + A   K M+     KE G SWIE++ QV SF+V
Sbjct: 505 VLEMKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFIV 564

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYV 640
            D        +  VL  L+R M D GYV
Sbjct: 565 GDIFDSSNKEVCEVLELLIRHMKDAGYV 592


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 312/558 (55%), Gaps = 13/558 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+  +++  Y KC +M +A+K+ +  P  D   W T++SGF +N +       F R +EL
Sbjct: 254 VLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVF-RDMEL 312

Query: 150 GFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS-S 207
                +  +++ +L+A   S LSL + +  H  V + G E+++ +GNAL+  Y KC   +
Sbjct: 313 SGLLPNNFTYSSLLNA-SSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHIT 371

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           ++  KVF E+   NV+ WT++I+G  + +L E+  +LF +M    + PNS T  + + AC
Sbjct: 372 TNAVKVFREITSPNVMCWTSLIAGFAEKRL-EDSFQLFAEMQAAGVRPNSFTMSAILGAC 430

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S  ++L     +HG + K  +  D+ + +AL+D Y+  G +++AW +       D ++ T
Sbjct: 431 SKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDSITYT 490

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            +     Q G    A+++ + M   GI++D   +++ L       ++  GKQ+H   +KS
Sbjct: 491 CLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKS 550

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
            F     V+N L+++YSKCG + D+ + F  ++  ++ SWN +I+ F+ +G    AL  +
Sbjct: 551 GFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTF 610

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           ++M+L GV+P  +T LSL+ ACSH GL+  G+E+  SM + + I+P+ +HY C+VD++GR
Sbjct: 611 DDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGR 670

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
            G L EA   IE+M  KPD L+ + LL AC++HG+  +G+  A +     P  PA Y+L+
Sbjct: 671 GGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLL 730

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           AN+Y  +G      K  + M+E G+ +  G  W+EI  +VH F   +K++         +
Sbjct: 731 ANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGEKINEDE------I 784

Query: 628 AELLRLMIDEGYVPNKRF 645
            E L  +I E    N+R+
Sbjct: 785 TEKLEFLITE--FRNRRY 800



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 214/448 (47%), Gaps = 26/448 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS Y K   +  A  LFD+MP RD VSW T++S   +          F   +  G Y
Sbjct: 53  NNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEY 112

Query: 153 QLDQASFTIILSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 FT  LS+  RS  +L        IHC     G E    VG +L+  Y KCG  S
Sbjct: 113 P---NEFT--LSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCS 167

Query: 209 -SGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
               K+   ++   +V++WT ++S LV+N  + E  +++VKM    + PN  T++  + A
Sbjct: 168 VEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGA 227

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S    L  G+ +H  L     + +L +++A++DMYSKC  + DA ++     E D    
Sbjct: 228 VSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLW 287

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           T ++ GF QN    EA+ +F  M  +G+  +    S++L       SL LG+Q HS +I 
Sbjct: 288 TTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVII 347

Query: 387 SDFTSNPFVNNGLINMYSKCGDL-EDSIKVFSRMAPRNSVSWNSMIAAFA--RHGNGFKA 443
                + ++ N L++MY KC  +  +++KVF  +   N + W S+IA FA  R  + F  
Sbjct: 348 VGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLEDSF-- 405

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-- 501
            +L+ EM+  GV P   T  ++L ACS    +   M     M   H I  + +    V  
Sbjct: 406 -QLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTM-----MLHGHIIKTKVDIDIAVAN 459

Query: 502 --VDMVGRAGLLIEARSFIERMPVKPDV 527
             VD     G++ EA S I  M ++  +
Sbjct: 460 ALVDTYAGVGMIDEAWSVIGTMNLRDSI 487



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 196/382 (51%), Gaps = 14/382 (3%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +LS C+ + L      IH  +   G + ++ + N L++ Y K       R +F EM  R+
Sbjct: 21  VLSFCNSNSLK-EGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRD 79

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WT ++S   + + + + L+LF  M      PN  T  S++ +C  L     G QIH 
Sbjct: 80  VVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHC 139

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVE-DAWQIFEFAEE-LDGVSMTVILVGFAQNGFE 339
              KL L+ +  + ++L++ Y+KCG    +AW++    ++  D VS T +L    +NG  
Sbjct: 140 SAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKW 199

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTSNPFVNN 397
            EA +++VKM+++G+   PN  + V  +  V + LGL  GK +H+ +I      N  +  
Sbjct: 200 GEAFEIYVKMIESGVY--PNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKT 257

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            +++MYSKC  + D+IKV S + P   V  W ++I+ F ++    +A+ ++ +M+L G+ 
Sbjct: 258 AVVDMYSKCRRMVDAIKV-SNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLL 316

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEA 514
           P + T+ SLL+A S +  ++ G +F    + V  +    + Y    +VDM  +   +   
Sbjct: 317 PNNFTYSSLLNASSSILSLDLGEQF---HSRVIIVGLEDDLYIGNALVDMYMKCSHITTN 373

Query: 515 RSFIERMPVKPDVLVWQALLGA 536
              + R    P+V+ W +L+  
Sbjct: 374 AVKVFREITSPNVMCWTSLIAG 395


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 199/592 (33%), Positives = 302/592 (51%), Gaps = 79/592 (13%)

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-------DQASF 159
           +A KLFD+MP RDTV+WN+M++ + +        GF + +L + FYQ+       D  +F
Sbjct: 23  HARKLFDEMPNRDTVAWNSMITSYSQ-------LGFHQEALSI-FYQMRNTNTKPDHFTF 74

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM-- 217
           T  LSAC  +        IH LV + GY   + V N+LI  Y KC  + S  +VF EM  
Sbjct: 75  TATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGD 134

Query: 218 -----------------------RVRNV------ITWTAVISGLVQNQLYEEGLKLFVKM 248
                                   + N+      I W  +I+GL +    E  L +F +M
Sbjct: 135 INEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREM 194

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL----WKLALQSDLCIES-------- 296
              L+ P+  TY + + AC+       G  +HG++    W  A+++   I S        
Sbjct: 195 RESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSL 254

Query: 297 -------------------ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
                              A++D Y K G V +A+ +F+   E + VS T ++ G+A+NG
Sbjct: 255 NDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMITGYARNG 314

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
           + EEA++ FV M       D     AVL        LG G+ +H   I++ F++  +V N
Sbjct: 315 YGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGN 374

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           GL+NMY+KCGDL+ SI  F  +  ++ VS+N+++ AF  HG   +AL+LYE+M   G +P
Sbjct: 375 GLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKP 434

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             +TF+ LL  CSH GL+ +G  F  SM  VH +S  A+H AC+VDM+GR G L EA+  
Sbjct: 435 DKMTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKEL 494

Query: 518 IERMPVKPDVLV--WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575
           +++     DV     +ALLGACS HG+ EMG Y  + L   +P+    Y+L +N+Y   G
Sbjct: 495 VKKYSKTSDVEASSCEALLGACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQSNLYCVRG 554

Query: 576 RWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +WKE     K M + G+ K  G SWIE+  +V +FV  + ++P  D ++  L
Sbjct: 555 QWKEAEMVRKAMVDEGLKKMPGCSWIEVRNKVTAFVAGNHLYPYTDELYKTL 606



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 201/461 (43%), Gaps = 75/461 (16%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFI-------------------KTFEPFDNQNVY 83
           ++   +  LS  A  G F  G  +HA  I                   K F+ F    V+
Sbjct: 70  DHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVF 129

Query: 84  NVPN--ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
                   V W SLL  Y    +   A ++F+ MP +  ++WNTM++G  R GE ++   
Sbjct: 130 KEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLD 189

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F R +     + DQ +++ ++SAC  S   L   M+H LV   G+   +   N++++ Y
Sbjct: 190 MF-REMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLY 248

Query: 202 FKCGS--------SSSGR--------------KV---------FGEMRVRNVITWTAVIS 230
            K GS         S+GR              KV         F  +  +N+++WT++I+
Sbjct: 249 AKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIVSWTSMIT 308

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G  +N   EE L+ FV M      P+  T+ + + ACS L  L  GR +HG   +    +
Sbjct: 309 GYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFST 368

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
            L + + L++MY+KCG ++ +   F      D VS   +L  F  +G   EA+QL+  M+
Sbjct: 369 YLYVGNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASEALQLYEDMM 428

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGL----------GKQIHSLIIKSDFTSNPFVNNGLI 400
             G + D       +G+    +  GL           K +H L  ++D  +       ++
Sbjct: 429 TCGTKPDK---MTFIGLLMTCSHSGLIEEGRLFFNSMKSVHGLSYEADHVAC------MV 479

Query: 401 NMYSKCGDLEDS---IKVFSRMAPRNSVSWNSMIAAFARHG 438
           +M  + G L ++   +K +S+ +   + S  +++ A + HG
Sbjct: 480 DMLGRGGYLAEAKELVKKYSKTSDVEASSCEALLGACSAHG 520



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 138/338 (40%), Gaps = 79/338 (23%)

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
           G +  A ++F+     D V+   ++  ++Q GF +EA+ +F +M     + D    +A L
Sbjct: 19  GYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRNTNTKPDHFTFTATL 78

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                  S   G +IH+L+I   + S+  VNN LI+MY KC D   + +VF  M   N V
Sbjct: 79  SACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDAFSAGQVFKEMGDINEV 138

Query: 426 S-------------------------------WNSMIAAFARHGNGFKALELYEEMKLEG 454
           S                               WN+MIA   R+G     L+++ EM+   
Sbjct: 139 SWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRYGEIELCLDMFREMRESL 198

Query: 455 VEPTDVTFLSLLHACSH-----------------------------------VGLVNKGM 479
           +EP   T+ +L+ AC+                                     G +N  +
Sbjct: 199 LEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAKNSILSLYAKFGSLNDAL 258

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           + ++S   + ++S  A     ++D   + G + EA    + +P K +++ W +++   + 
Sbjct: 259 KVVESTGRLTQVSWNA-----IIDAYMKVGYVNEAYLMFQSLPEK-NIVSWTSMITGYAR 312

Query: 540 HGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           +G  E     A + F+A   +   P  +   A +++CS
Sbjct: 313 NGYGE----EALRFFVAMASNCFLPDDFTFGAVLHACS 346


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 307/559 (54%), Gaps = 6/559 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD M + D +SWN M++G   N E + G   F   LE  
Sbjct: 232 VLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDE 291

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                    ++ +++   S+L   +K IH L    G+  +V   N+LI  Y   G     
Sbjct: 292 VEPNLMTITSVTVASGLLSDLDF-AKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEA 350

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             VF  M  R+ ++WTA+ISG  +N   ++ L+++  M +  ++P+ +T  S++ AC+ L
Sbjct: 351 CTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASL 410

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H +         + + +AL++MY+K   +E A ++F++  + D +S + ++
Sbjct: 411 GRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMI 470

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSD 388
            GF  N    EA+  F  M+    ++ PN V+ +  +       SL  GK+IH+ +++  
Sbjct: 471 AGFCFNHKNFEALYYFRHMLA---DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQG 527

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S  +V N L+++Y KCG    +   F     ++ VSWN M+A F  HG+G  AL  + 
Sbjct: 528 IASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFN 587

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM   G  P +VTF++LL  CS  G+V++G E   SMTE + I P  +HYAC+VD++ R 
Sbjct: 588 EMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRV 647

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L E  +FI RMP+ PD  VW ALL  C IH + E+G+ AA+ +   +P+    ++L++
Sbjct: 648 GRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLS 707

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +G W E +K  K M+  G++ + G SW+E++  +H+F+ DD+ HPQ   I+ VL 
Sbjct: 708 DLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLD 767

Query: 629 ELLRLMIDEGYVPNKRFIL 647
            +   M   G+ P + + L
Sbjct: 768 GIYERMKASGFAPVESYSL 786



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 225/455 (49%), Gaps = 8/455 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++LS  ++  +  +A K+F  MP RD  SWN MV G+ + G  +     + R L  G  
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG-A 191

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L +C       + + +H  V   G   EV V NAL+T Y KCG   + RK
Sbjct: 192 RPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARK 251

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M + + I+W A+I+G  +N   E GL+LF+ M    + PN +T  S  +A   L  
Sbjct: 252 VFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSD 311

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L   ++IH +  K    +D+   ++L+ MYS  G + +A  +F   E  D +S T ++ G
Sbjct: 312 LDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISG 371

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NGF ++A++++  M    +  D   V++ L        L +G ++H L     F   
Sbjct: 372 YEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRY 431

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L+ MY+K   +E +I+VF  M  ++ +SW+SMIA F  +   F+AL  +  M L
Sbjct: 432 IVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-L 490

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGL 510
             V+P  VTF++ L AC+  G +  G E       V R    +E Y    ++D+  + G 
Sbjct: 491 ADVKPNSVTFIAALAACAATGSLRCGKEI---HAHVLRQGIASEGYVPNALLDLYVKCGQ 547

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
              A +       K DV+ W  +L     HG  ++
Sbjct: 548 TGYAWAQFGAHGTK-DVVSWNIMLAGFVAHGHGDI 581



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 202/371 (54%), Gaps = 7/371 (1%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +GNA+++   + G +    KVF +M  R+V +W  ++ G  +    EE L L+ +M    
Sbjct: 131 LGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG 190

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
             P+  T+   + +C G+  L  GR++H  + +  L  ++ + +AL+ MY+KCG VE A 
Sbjct: 191 ARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAAR 250

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGV 370
           ++F+     D +S   ++ G  +N   E  ++LF+ M++   E++PN+  +++V    G+
Sbjct: 251 KVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLED--EVEPNLMTITSVTVASGL 308

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            + L   K+IH+L +K  F ++    N LI MYS  G + ++  VFSRM  R+++SW +M
Sbjct: 309 LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAM 368

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ + ++G   KALE+Y  M++  V P DVT  S L AC+ +G ++ G++  +  T    
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGF 428

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GACSIHGDSEMGKYA 549
           I       A +V+M  ++ ++ +A    + MP K DV+ W +++ G C  H + E   Y 
Sbjct: 429 IRYIVVANA-LVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHKNFEALYYF 486

Query: 550 AEKLFLAQPDS 560
              L   +P+S
Sbjct: 487 RHMLADVKPNS 497



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 23/299 (7%)

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GL+A       HG          L + +A++ M  + G    AW++F    E D  S  V
Sbjct: 113 GLRACGHADAAHGTF-------GLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNV 165

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+ + GF EEA+ L+ +M+ AG   D      VL   G    L +G+++H+ +++  
Sbjct: 166 MVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFG 225

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                 V N L+ MY+KCGD+E + KVF  M+  + +SWN+MIA    +      LEL+ 
Sbjct: 226 LGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFL 285

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------V 502
            M  + VEP  +T  S+  A    GL++  ++F K   E+H ++ +      V      +
Sbjct: 286 HMLEDEVEPNLMTITSVTVAS---GLLSD-LDFAK---EIHALAVKRGFATDVAFCNSLI 338

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
            M    G + EA +   RM  + D + W A++     +G  D  +  YA  ++    PD
Sbjct: 339 QMYSSLGRMGEACTVFSRMETR-DAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPD 396



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+L+  Y K   +  A+++F  MP +D +SW++M++GF  N +      +F+    L
Sbjct: 433 VVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM--L 490

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + +  +F   L+AC  +      K IH  V   G   E  V NAL+  Y KCG +  
Sbjct: 491 ADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGY 550

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               FG    ++V++W  +++G V +   +  L  F +M     +P+ +T+++ +  CS 
Sbjct: 551 AWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSR 610

Query: 270 LQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
              + +G ++ H +  K ++  +L   + ++D+ S+ G + + + 
Sbjct: 611 AGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYN 655


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 312/575 (54%), Gaps = 35/575 (6%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR--SLELGFYQLDQASFTIILSA 165
           A K+FD++P  ++ +WNT++  +    +       F    S E   Y        +I +A
Sbjct: 84  ARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAA 143

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
            + S LSL  + +H +        +V V N+LI  YF CG   S  KVF  ++ ++V++W
Sbjct: 144 AEVSSLSL-GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSW 202

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            ++I+G VQ    ++ L+LF KM    +  + +T +  + AC+ ++ L  GR++   + +
Sbjct: 203 NSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEE 262

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA----------- 334
             +  +L + +A++DMY+KCGS+EDA ++F+  EE D V+ T +L G+A           
Sbjct: 263 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREV 322

Query: 335 --------------------QNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTS 373
                               QNG   EA+ +F ++ ++  I+++   + + L       +
Sbjct: 323 LNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGA 382

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L LG+ IHS I K+    N +V + LI+MYSKCGDLE + +VF+ +  R+   W++MI  
Sbjct: 383 LELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGG 442

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
            A HG G +A++++ +M+   V+P  VTF ++  ACSH GLV++       M   + I P
Sbjct: 443 LAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVP 502

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HYAC+VD++GR+G L +A  FIE MP+ P   VW ALLGAC IH +  + + A  +L
Sbjct: 503 EDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRL 562

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P +   ++L++NIY+ SG+W   ++  K M+  G+ KE G S IEI+  +H F+  
Sbjct: 563 LELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSG 622

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D  HP ++ ++G L E++  +   GY P    +L 
Sbjct: 623 DNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQ 657



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 209/453 (46%), Gaps = 66/453 (14%)

Query: 31  DPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           D  SS S+   + Y     L+  +A+     LG SLH   IK+           V +   
Sbjct: 121 DMVSSESQCYPNKYT-FPFLIKAAAEVSSLSLGQSLHGMAIKS----------AVGSDVF 169

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y  C  + +A K+F  +  +D VSWN+M++GF++ G  D     FK+ +E  
Sbjct: 170 VANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK-MESE 228

Query: 151 FYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEE------VTVGNALITSYFK 203
             +    +   +LSAC +  +L    +       +C Y EE      +T+ NA++  Y K
Sbjct: 229 DVKASHVTMVGVLSACAKIRDLEFGRR-------VCSYIEENRVNVNLTLANAMLDMYTK 281

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE------------------------ 239
           CGS    +++F  M  ++ +TWT ++ G   ++ YE                        
Sbjct: 282 CGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAY 341

Query: 240 -------EGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
                  E L +F ++ L   I  N +T +S++ AC+ + AL  GR IH  + K  ++ +
Sbjct: 342 EQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMN 401

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
             + SAL+ MYSKCG +E A ++F   E+ D    + ++ G A +G   EA+ +F KM +
Sbjct: 402 FYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQE 461

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG----LINMYSKCG 407
           A ++  PN V+    VF   +  GL  +  SL  K + +      +     ++++  + G
Sbjct: 462 ANVK--PNGVT-FTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSG 518

Query: 408 DLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGN 439
            LE ++K    M  P ++  W +++ A   H N
Sbjct: 519 YLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 551



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGL--INMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
           +SL   KQ H+ +I++   S+P+  + L  I   S    LE + KVF  +   NS +WN+
Sbjct: 42  SSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSFTWNT 101

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVE--PTDVTFLSLLHACSHVGLVNKG 478
           +I A+A   +   ++  + +M     +  P   TF  L+ A + V  ++ G
Sbjct: 102 LIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLG 152


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 292/539 (54%), Gaps = 5/539 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLL+FY +   + +A ++FD MP RD V+WN+MV G++ NG   +    F+   E    
Sbjct: 148 NSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEV 207

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q D       L+AC      +  + +H  V   G E +V VG +++  Y KCG  +S   
Sbjct: 208 QHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEG 267

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  R V+TW  +I G   N+  EE    FV+M         +T ++ + AC+  ++
Sbjct: 268 VFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTES 327

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR +HG + +      + +E+AL++MYSK G V+ + ++F        VS   ++  
Sbjct: 328 SLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAA 387

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +       EA+ LF+ ++   +  D   +SAV+  F +   L   +Q+HS II+  +  N
Sbjct: 388 YMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGEN 447

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             + N +++MY++CGD+  S ++F +MA ++ +SWN+MI  +A HG G  ALE++ EMK 
Sbjct: 448 TLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKC 507

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+ P + TF+S+L ACS  GL ++G     SM   + + P+ EHY C+ D++GRAG L 
Sbjct: 508 NGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLK 567

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP-----DSPAPYILM 567
           E   FIE MP+ P   VW +LL A     D ++ +YAAE++F  +      D+   Y+L+
Sbjct: 568 EVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLI 627

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           +++Y+ +GRWK+  +    M+E G+ +    S +E+     SFV  D  HPQ+  I  V
Sbjct: 628 SSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKMIQEV 686



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 188/395 (47%), Gaps = 16/395 (4%)

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSSGRKV 213
           D+ +F ++L  C R       +  H      G    +V  GN+L+  Y + G      +V
Sbjct: 107 DRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERV 166

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQA 272
           F  M  R+V+TW +++ G V N L    L  F +MH  L +  + +  ++++ AC    A
Sbjct: 167 FDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESA 226

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +GR++H  + +  ++ D+ + ++++DMY KCG +  A  +F        V+   ++ G
Sbjct: 227 LMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGG 286

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A N   EEA   FV+M   G +++      +L       S   G+ +H  I +  F  +
Sbjct: 287 YALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPH 346

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             +   L+ MYSK G ++ S KVF +M  +  VSWN+MIAA+       +A+ L+ ++  
Sbjct: 347 VVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLN 406

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVG 506
           + + P   T  +++ A   +GL       L+   ++H    R  +         ++ M  
Sbjct: 407 QPLYPDYFTMSAVVPAFVLLGL-------LRQCRQMHSYIIRLGYGENTLIMNAIMHMYA 459

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           R G ++ +R   ++M  K DV+ W  ++   +IHG
Sbjct: 460 RCGDVLSSREIFDKMAAK-DVISWNTMIMGYAIHG 493



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 201/417 (48%), Gaps = 17/417 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  S+L  Y KC  + +A  +F  MP R  V+WN M+ G+  N   +  F  F +    G
Sbjct: 248 VGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEG 307

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +Q++  +   +L+AC ++E SL  + +H  +    +   V +  AL+  Y K G   S 
Sbjct: 308 -HQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSS 366

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            KVFG+M  + +++W  +I+  +  ++Y E + LF+ +    + P+  T  + V A   L
Sbjct: 367 EKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLL 426

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L + RQ+H  + +L    +  I +A+M MY++CG V  + +IF+     D +S   ++
Sbjct: 427 GLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMI 486

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-KQIHSLIIKSDF 389
           +G+A +G    A+++F +M   G+  + +   +VL    V      G  Q +S+  + D+
Sbjct: 487 MGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSM--QRDY 544

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALE 445
              P + +   + ++  + GDL++ ++    M   P   V W S++ A +R+ N     E
Sbjct: 545 GMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRV-WGSLLTA-SRNRNDIDIAE 602

Query: 446 LYEE----MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE---VHRISPRA 495
              E    ++ + +E  +     L+ +        K +E +KS+ E   + R  PR+
Sbjct: 603 YAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRS 659



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 6/246 (2%)

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           ++  G ++DA +    A   D     V++ G A  G    A+  +  M+ AG   D    
Sbjct: 52  HAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARPDRFTF 111

Query: 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
             VL       +L  G+  HS  I+    + + +  N L+  Y++ G ++D+ +VF  M 
Sbjct: 112 PVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMP 171

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEM--KLEGVEPTDVTFLSLLHACSHVGLVNKG 478
            R+ V+WNSM+  +  +G G  AL  + EM   LE V+   V  ++ L AC     + +G
Sbjct: 172 ARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALE-VQHDGVGIIAALAACCLESALMQG 230

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E + +    H +    +    ++DM  + G +  A      MP +  V+ W  ++G  +
Sbjct: 231 RE-VHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRT-VVTWNCMIGGYA 288

Query: 539 IHGDSE 544
           ++   E
Sbjct: 289 LNERPE 294



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T+I N+++  Y +C  + ++ ++FD M  +D +SWNTM+ G+  +G+       F   ++
Sbjct: 448 TLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFS-EMK 506

Query: 149 LGFYQLDQASFTIILSACDRSELS 172
               + ++++F  +L+AC  S L+
Sbjct: 507 CNGLRPNESTFVSVLTACSVSGLT 530


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/582 (32%), Positives = 316/582 (54%), Gaps = 40/582 (6%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  A+ +F+ +   + + WNTM  G   + +       +   + LG    +  +F  +
Sbjct: 82  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLP-NSYTFPFL 140

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG------- 215
           L +C +S+     + IH  V   GY+ ++ V  +LI+ Y + G     RKVF        
Sbjct: 141 LKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDV 200

Query: 216 ------------------------EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
                                   E+ V++V++W A+ISG  +   Y+E L+LF +M   
Sbjct: 201 VSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKT 260

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            I P+  T ++ V AC+   ++  GRQ+H  +      S+L I ++LMD+YSKCG +E A
Sbjct: 261 NIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETA 320

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +FE     D +S   ++ G+      +EA+ LF +M+++G    PN V+ +L +    
Sbjct: 321 CGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGER--PNDVT-MLSILPAC 377

Query: 372 TSLG---LGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             LG   +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF+ +  ++  S
Sbjct: 378 AHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS 437

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+MI  FA HG    A +++  M+  G+EP D+TF+ LL ACS  G+++ G    ++MT
Sbjct: 438 WNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMT 497

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + ++I+P+ EHY C++D++G +GL  EA   I  M ++PD ++W +LL AC I G+ E+G
Sbjct: 498 QDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELG 557

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           +  A+ L   +P++P  Y+L++NIY+ +GRW E AK    + + G+ K  G S IEI+  
Sbjct: 558 ESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSV 617

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           VH F++ DK HP+   I+G+L E+  L+   G+VP+   +L 
Sbjct: 618 VHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ 659


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 298/563 (52%), Gaps = 4/563 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T +   L + Y  C  M  A  +FD + ++++  WN+M+ G+  N         + + L 
Sbjct: 58  TYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLH 117

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G  + D  ++  +L AC    L  + + +H LV + G EE+V VGN++++ YFK G   
Sbjct: 118 FG-QKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVE 176

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           + R VF  M VR++ +W  ++SG V+N       ++F  M       +  T L+ + AC 
Sbjct: 177 AARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACG 236

Query: 269 GLQALCEGRQIHGILWKLALQSDLC---IESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            +  L  G++IHG + +      +C   + ++++DMY  C SV  A ++FE     D VS
Sbjct: 237 DVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVS 296

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              ++ G+ + G   +A++LF +MV  G   D   V +VL      ++L LG  + S ++
Sbjct: 297 WNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVV 356

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K  +  N  V   LI MY+ CG L  + +VF  M  +N  +   M+  F  HG G +A+ 
Sbjct: 357 KRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAIS 416

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++ EM  +GV P +  F ++L ACSH GLV++G E    MT  + + PR  HY+C+VD++
Sbjct: 417 IFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLL 476

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRAG L EA + IE M +KP+  VW ALL AC +H + ++   +A+KLF   PD  + Y+
Sbjct: 477 GRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYV 536

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
            ++NIY+   RW++       + +  + K    S++E+ K VH F V D  H Q+D I+ 
Sbjct: 537 CLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYA 596

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L +L   +   GY P+   +L+
Sbjct: 597 KLKDLNEQLKKAGYKPDTSLVLY 619



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 13/194 (6%)

Query: 373 SLGLGKQIHSLIIKS-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           SL    Q+H+ +        N ++   L   Y+ CG +  +  +F ++  +NS  WNSMI
Sbjct: 37  SLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMI 96

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             +A + +  +AL LY +M   G +P + T+  +L AC  + L   G + + ++  V  +
Sbjct: 97  RGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK-VHALVVVGGL 155

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL----------GACSIHG 541
                    ++ M  + G +  AR   +RM V+ D+  W  ++          GA  + G
Sbjct: 156 EEDVYVGNSILSMYFKFGDVEAARVVFDRMLVR-DLTSWNTMMSGFVKNGEARGAFEVFG 214

Query: 542 DSEMGKYAAEKLFL 555
           D     +  ++  L
Sbjct: 215 DMRRDGFVGDRTTL 228


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 304/553 (54%), Gaps = 6/553 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD M + D +SWN M++G   NGE + G   F   L+  
Sbjct: 232 VLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQ-D 290

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             Q +  + T +  A         +K +H L    G+  +V   N+LI  Y   G     
Sbjct: 291 EVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQA 350

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF  M  R+ ++WTA+ISG  +N   ++ L+++  M +  ++P+ +T  S++ AC+ L
Sbjct: 351 RTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACL 410

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            +L  G ++H +       S + + +AL++MY+K   ++ A ++F+   E D VS + ++
Sbjct: 411 GSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMI 470

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSD 388
            GF  N    EA+  F  M+    ++ PN V+ +  +     +  L  GK+IH+ +++  
Sbjct: 471 AGFCFNHRNFEALYYFRHMLA---DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCG 527

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                ++ N LI++Y KCG    +   F     ++ VSWN MIA F  HGNG  AL  + 
Sbjct: 528 IAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFN 587

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G  P +VTF++LL ACS  G+V++G E   SMT+ + I P  +HYAC+VD++ R 
Sbjct: 588 QMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRV 647

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA +FI  MP+ PD  VW ALL  C IH   E+G+ AA+ +   +P+    ++L+ 
Sbjct: 648 GQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLC 707

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +G W + A+  K M+E G+D ++G SW+E++  VH+F+ DD+ HPQ   I+ VL 
Sbjct: 708 DLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLE 767

Query: 629 ELLRLMIDEGYVP 641
            +   M   G  P
Sbjct: 768 GIYERMKASGCAP 780



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/454 (29%), Positives = 227/454 (50%), Gaps = 8/454 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++LS  ++  +  +A ++F  MP RD  SWN MV G+ + G  +     + R +  G  
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGV- 191

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L +C       + + +H  V   G+ EEV V NAL+T Y KCG   + RK
Sbjct: 192 RPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARK 251

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M V + I+W A+I+G  +N     GL+LF+ M    + PN +T  S  +A   L  
Sbjct: 252 VFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSD 311

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   +++HG+  K    +D+   ++L+ MY+  G +  A  +F   +  D +S T ++ G
Sbjct: 312 ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISG 371

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NGF ++A++++  M    +  D   +++ L       SL +G ++H L     F S 
Sbjct: 372 YEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSY 431

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L+ MY+K   ++ +I+VF  M  ++ VSW+SMIA F  +   F+AL  +  M L
Sbjct: 432 VVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-L 490

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGL 510
             V+P  VTF++ L AC+  G +  G E       V R     E Y    ++D+  + G 
Sbjct: 491 ADVKPNSVTFIAALAACAATGALRSGKEI---HAHVLRCGIAYEGYLPNALIDLYVKCGQ 547

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              A +       K DV+ W  ++     HG+ E
Sbjct: 548 TGYAWAQFCAHGAK-DVVSWNIMIAGFVAHGNGE 580



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 197/371 (53%), Gaps = 7/371 (1%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +GNA+++   + G +    +VF +M  R+V +W  ++ G  +  L EE L L+ +M    
Sbjct: 131 LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG 190

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           + P+  T+   + +C G+     GR++H  + +     ++ + +ALM MY+KCG V  A 
Sbjct: 191 VRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAAR 250

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGV 370
           ++F+    +D +S   ++ G  +NG     ++LF+ M++   E+ PN+  +++V    G+
Sbjct: 251 KVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQD--EVQPNLMTITSVTVASGL 308

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            + +   K++H L +K  F ++    N LI MY+  G +  +  VFSRM  R+++SW +M
Sbjct: 309 LSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAM 368

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I+ + ++G   KALE+Y  M++  V P D+T  S L AC+ +G ++ G++ L  + E   
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVK-LHELAESKG 427

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GACSIHGDSEMGKYA 549
                     +++M  ++  + +A    + MP K DV+ W +++ G C  H + E   Y 
Sbjct: 428 FMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEK-DVVSWSSMIAGFCFNHRNFEALYYF 486

Query: 550 AEKLFLAQPDS 560
              L   +P+S
Sbjct: 487 RHMLADVKPNS 497



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 132/272 (48%), Gaps = 8/272 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL  Y K  ++  A+++F  MP +D VSW++M++GF  N        +F+    L
Sbjct: 433 VVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM--L 490

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              + +  +F   L+AC  +      K IH  V  CG   E  + NALI  Y KCG +  
Sbjct: 491 ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGY 550

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F     ++V++W  +I+G V +   E  L  F +M      P+ +T+++ + ACS 
Sbjct: 551 AWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSR 610

Query: 270 LQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
              + EG ++ H +  K ++  +L   + ++D+ S+ G + +A   + F  E+  ++   
Sbjct: 611 GGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEA---YNFINEMP-ITPDA 666

Query: 329 ILVGFAQNGFE-EEAMQLFVKMVKAGIEIDPN 359
            + G   NG      ++L     K  +E++PN
Sbjct: 667 AVWGALLNGCRIHRHVELGELAAKYVLELEPN 698


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 318/566 (56%), Gaps = 28/566 (4%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV WN L+S ++K   +  A ++FD MP R+ VSW +MV G++RNG+            E
Sbjct: 86  TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVA--------EAE 137

Query: 149 LGFYQLDQ---ASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
             F+ +      S+T++L        +    K+   +      E++V     +I  Y + 
Sbjct: 138 RLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP-----EKDVVAVTNMIGGYCEE 192

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R +F EM  RNV+TWTA++SG  +N   +   KLF  M       N +++ + +
Sbjct: 193 GRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMP----ERNEVSWTAML 248

Query: 265 MACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           +   G       R+   +   + ++  +     +M  +   G V+ A ++F+  +E D  
Sbjct: 249 L---GYTHSGRMREASSLFDAMPVKPVVVCNEMIMG-FGLNGEVDKARRVFKGMKERDNG 304

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSL 383
           + + ++  + + G+E EA+ LF +M + G+ ++ P+++S VL V     SL  GKQ+H+ 
Sbjct: 305 TWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLIS-VLSVCVSLASLDHGKQVHAQ 363

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +++S+F  + +V + LI MY KCG+L  + +VF+R   ++ V WNSMI  +++HG G +A
Sbjct: 364 LVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEA 423

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L ++ +M   GV P DVTF+ +L ACS+ G V +G+E  ++M   +++ P  EHYAC+VD
Sbjct: 424 LNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVD 483

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRA  + EA   +E+MP++PD +VW ALLGAC  H   ++ + A EKL   +P +  P
Sbjct: 484 LLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 543

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADT 622
           Y+L++N+Y+  GRW++     +++K   V K  G SWIE+EK+VH F   D K HP+   
Sbjct: 544 YVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPI 603

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I  +L +L  L+ + GY P+  F+LH
Sbjct: 604 IMKMLEKLGGLLREAGYCPDGSFVLH 629



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 177/384 (46%), Gaps = 47/384 (12%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V+  NA++ +YF+         +F +M  RN ++W  +ISG ++N +  E  ++F  M  
Sbjct: 55  VSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMP- 113

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
              + N +++ S V        + E  +   + W +    ++   + ++    + G V+D
Sbjct: 114 ---DRNVVSWTSMVRGYVRNGDVAEAER---LFWHMP-HKNVVSWTVMLGGLLQEGRVDD 166

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A ++F+   E D V++T ++ G+ + G  +EA  LF +M K  +     MVS       V
Sbjct: 167 ARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKV 226

Query: 371 D-----------------TSLGLGKQIHSLIIK---SDFTSNP----FVNNGLINMYSKC 406
           D                 T++ LG   HS  ++   S F + P     V N +I  +   
Sbjct: 227 DVARKLFEVMPERNEVSWTAMLLG-YTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLN 285

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G+++ + +VF  M  R++ +W++MI  + R G   +AL L+  M+ EG+     + +S+L
Sbjct: 286 GEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVL 345

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIER 520
             C  +  ++ G        +VH    R+E        + ++ M  + G L+ A+    R
Sbjct: 346 SVCVSLASLDHG-------KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNR 398

Query: 521 MPVKPDVLVWQALLGACSIHGDSE 544
            P+K DV++W +++   S HG  E
Sbjct: 399 FPLK-DVVMWNSMITGYSQHGLGE 421



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 18/188 (9%)

Query: 400 INMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
           I  Y++ G L+ + KVF    +  R   SWN+M+AA+       +AL L+E+M     + 
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMP----QR 84

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             V++  L+      G++++      +M + + +S     +  +V    R G + EA   
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS-----WTSMVRGYVRNGDVAEAERL 139

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL-MANIYSCSGR 576
              MP K +V+ W  +LG     G  +     A KLF   P+     +  M   Y   GR
Sbjct: 140 FWHMPHK-NVVSWTVMLGGLLQEGRVD----DARKLFDMMPEKDVVAVTNMIGGYCEEGR 194

Query: 577 WKERAKAI 584
             E A+A+
Sbjct: 195 LDE-ARAL 201


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 326/605 (53%), Gaps = 22/605 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L+S+ A   HF  G  +H+  +++          ++ ++  + N+L++ Y    ++ +A 
Sbjct: 252 LMSVCASADHFSHGSGIHSLCLRS----------SLDSSVTVINALVNMYSAAGKLSDAE 301

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ---LDQASFTIILSAC 166
            LF +M  RD +SWNTM+S +++N           ++L   F+     +  +F+  L AC
Sbjct: 302 FLFWNMSRRDLISWNTMISSYVQNCNSTDAL----KTLGQLFHTNEIPNHLTFSSALGAC 357

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                 +  KM+H +V     +  + VGN+LIT Y KC S     KVF  M   +V+++ 
Sbjct: 358 SSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYN 417

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS---SVMACSGLQALCEGRQIHGIL 283
            +I G    +   + +++F  +    I PN +T ++   S  + + L     GR +H  +
Sbjct: 418 VLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNY--GRPLHAYI 475

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            +    SD  + ++L+ MY+KCG++E +  IF      + VS   I+   AQ G  EEA+
Sbjct: 476 IRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEAL 535

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +LF+ M  AG ++D   ++  L       SL  G Q+H L +KS   S+ +V N  ++MY
Sbjct: 536 KLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMY 595

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
            KCG + + +++    A R    WN++I+ +A++G   +A E +++M   G +P  VTF+
Sbjct: 596 GKCGKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFV 655

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
           +LL ACSH GLV+KG+++  SM     +SP  +H  C+VD++GR G   EA  FIE MPV
Sbjct: 656 ALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPV 715

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
            P+ L+W++LL +   H + E+G+ AA+KL    P   + Y+L++N+Y+ + RW +  K 
Sbjct: 716 LPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKL 775

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
              MK + ++K    SW++++ +V +F + D+ H  A+ I+  L E+L  + + GY+ + 
Sbjct: 776 RSHMKTININKRPACSWLKLKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLREVGYIADT 835

Query: 644 RFILH 648
              LH
Sbjct: 836 SSALH 840



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 242/464 (52%), Gaps = 10/464 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V  + N   + NSL++ +    ++++A KLFD M   DT+S N M+S +   G     F 
Sbjct: 173 VSGLQNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFL 232

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
            F      G  + D  +   ++S C  ++       IH L      +  VTV NAL+  Y
Sbjct: 233 VFSDMRHHGL-RPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMY 291

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTY 260
              G  S    +F  M  R++I+W  +IS  VQN    + LK   ++ H   I PN LT+
Sbjct: 292 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEI-PNHLTF 350

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            S++ ACS   AL +G+ +H I+ +L+LQ +L + ++L+ MY KC S+EDA ++F+    
Sbjct: 351 SSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT 410

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA--VLGVFGVDTSL-GLG 377
            D VS  V++ G+A      +AMQ+F  +  AGI+  PN ++   + G F     L   G
Sbjct: 411 HDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIK--PNYITMINIHGSFTSSNDLHNYG 468

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           + +H+ II++ F S+ +V N LI MY+KCG+LE S  +F+ +  +N VSWN++IAA A+ 
Sbjct: 469 RPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQL 528

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G+G +AL+L+ +M+  G +   V     L +C+ +  + +GM+ L  +     +   +  
Sbjct: 529 GHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQ-LHGLGMKSGLDSDSYV 587

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               +DM G+ G + E    +    ++P    W  L+   + +G
Sbjct: 588 VNAAMDMYGKCGKMNEMLQMVPDQAIRPQ-QCWNTLISGYAKYG 630



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 215/461 (46%), Gaps = 10/461 (2%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR---SEL 171
           MP R   +W T VSG +R G     F   +   E G   L   +   +++AC+R    E 
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGV-PLSGFALASLVTACERRGRDEG 59

Query: 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
                 IH L +  G    V +G AL+  Y   G  S  R++F EM  RNV++WTA++  
Sbjct: 60  IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVA 119

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
           L  N   EE L+ + +M    +  N+  + + V  C  L+    G Q+   +    LQ+ 
Sbjct: 120 LSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQ 179

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + + ++L+ M+   G V+DA ++F+  EE D +S   ++  ++  G   +   +F  M  
Sbjct: 180 VSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRH 239

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            G+  D   + +++ V         G  IHSL ++S   S+  V N L+NMYS  G L D
Sbjct: 240 HGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  +F  M+ R+ +SWN+MI+++ ++ N   AL+   ++      P  +TF S L ACS 
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSS 359

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
            G +  G + + ++     +         ++ M G+   + +A    + MP   DV+ + 
Sbjct: 360 PGALIDG-KMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTH-DVVSYN 417

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-YILMANIY 571
            L+G  ++  D   G  A +     +     P YI M NI+
Sbjct: 418 VLIGGYAVLED---GTKAMQVFSWIRSAGIKPNYITMINIH 455



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 218/469 (46%), Gaps = 14/469 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I  +LL  Y     + +A +LF +MP R+ VSW  ++     NG  +     +++    G
Sbjct: 81  IGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMRREG 140

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  +F  ++S C   E  +    +   V + G + +V+V N+LIT +   G     
Sbjct: 141 V-PCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQDA 199

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M   + I+  A+IS      +  +   +F  M    + P++ T  S +  C+  
Sbjct: 200 EKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASA 259

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
                G  IH +  + +L S + + +AL++MYS  G + DA  +F      D +S   ++
Sbjct: 260 DHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMI 319

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSD 388
             + QN    +A++   ++     EI PN +  S+ LG      +L  GK +H+++++  
Sbjct: 320 SSYVQNCNSTDALKTLGQLFHTN-EI-PNHLTFSSALGACSSPGALIDGKMVHAIVLQLS 377

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N  V N LI MY KC  +ED+ KVF  M   + VS+N +I  +A   +G KA++++ 
Sbjct: 378 LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFS 437

Query: 449 EMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVG 506
            ++  G++P  +T +++  +  S   L N G      +     +S   E+ A  ++ M  
Sbjct: 438 WIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSD--EYVANSLITMYA 495

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           + G L E+ + I       +++ W A++ A +  G  E     A KLF+
Sbjct: 496 KCGNL-ESSTNIFNSITNKNIVSWNAIIAANAQLGHGE----EALKLFI 539


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 182/555 (32%), Positives = 303/555 (54%), Gaps = 30/555 (5%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRS 146
           V+  +++  Y K D + +A + F  +P     + N M+ G +R G   E    F F  RS
Sbjct: 281 VVGTAIVDVYAKADSLVDARRAFFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRS 340

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             +GF      S + + SAC   +               G++ +V V NA++  Y KC +
Sbjct: 341 -GIGF---GVVSLSGVFSACAEVK---------------GFDVDVCVRNAILDLYGKCKA 381

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                 VF EM  R+ ++W  +I+ L QN+ YE+ +    +M    +  +  TY S + A
Sbjct: 382 LVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKA 441

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GLQ+L  G  +HG   K  L  D  + S ++DMY KCG + +A ++ +     + VS 
Sbjct: 442 CAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRIGGQELVSW 501

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+ GF+ N   EEA + F +M+  G++ D    + VL       ++ LGKQIH  IIK
Sbjct: 502 NSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELGKQIHGQIIK 561

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +   + F+++ L++MY+KCG++ DS  +F ++   + VSWN+MI  +A HG GF+ALE+
Sbjct: 562 QEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALHGQGFEALEM 621

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E  +   V P   TF+++L ACSHVGL++ G  +   MT  +++ P+ EH+AC+     
Sbjct: 622 FERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEHFACMGPQ-- 679

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
                 EA  FI  MP++ D ++W+ LL  C I  D E+ + AA  +    PD  + YIL
Sbjct: 680 ------EALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYIL 733

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++N+Y+ SG+W + ++  + M++  + KE G SWIE++ ++H F+V +K+HP++  ++ +
Sbjct: 734 LSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKVHPRSREVYEM 793

Query: 627 LAELLRLMIDEGYVP 641
           L  L+  M   GY P
Sbjct: 794 LNNLICEMKLSGYEP 808



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 159/610 (26%), Positives = 256/610 (41%), Gaps = 119/610 (19%)

Query: 48  SRLLSISAKEGHFHL--GPSLHAS-FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104
           S +  + A  GH  L  G + HA   +  F P              + N LL  Y +C  
Sbjct: 33  SHVYQLCASAGHSALATGQAAHARMLVSGFVP-----------TMFVSNCLLQMYARCGG 81

Query: 105 MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGF-------------------GFFKR 145
             +A  +FD MP RDTVSWNTM++ +   G+  M                     G+ +R
Sbjct: 82  AAHAHGVFDTMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQR 141

Query: 146 ---------SLELGFYQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG 194
                    S+E+    +  D+ +  ++L AC   +   +   IH L    G E +V  G
Sbjct: 142 GMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAG 201

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           +AL+  Y KC S       F  M  RN ++W AVI+G VQN+ Y  GL+L  +       
Sbjct: 202 SALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCR------- 254

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
                       C  +  L   RQ+H    K    SD  + +A++D+Y+K  S+ DA + 
Sbjct: 255 ------------CKAITCLSTARQLHAHAIKNKFSSDRVVGTAIVDVYAKADSLVDARRA 302

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F         +   ++VG  + G   EAMQLF  M ++GI      V ++ GVF     +
Sbjct: 303 FFGLPNHTVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFG---VVSLSGVFSACAEV 359

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
                         F  +  V N ++++Y KC  L ++  VF  M  R+SVSWN++IAA 
Sbjct: 360 ------------KGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAAL 407

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV-----GLVNKGMEFLKSMTEVH 489
            ++      +    EM   G+E  D T+ S+L AC+ +     GLV  G      +    
Sbjct: 408 EQNECYEDTIVHLNEMLRSGMEADDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDA 467

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            +S      + VVDM  + G++ EA    +R+  + +++ W +++   S++  SE     
Sbjct: 468 FVS------STVVDMYCKCGMITEALKLHDRIGGQ-ELVSWNSIIAGFSLNKQSE----E 516

Query: 550 AEKLFLAQPD---SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           A+K F    D    P  +     + SC+                       ++ IE+ KQ
Sbjct: 517 AQKFFSEMLDMGVKPDHFTYATVLDSCA----------------------NLATIELGKQ 554

Query: 607 VHSFVVDDKM 616
           +H  ++  +M
Sbjct: 555 IHGQIIKQEM 564



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 31/221 (14%)

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           + +++  + A +G  AL  G+  H  +        + + + L+ MY++CG    A  +F+
Sbjct: 31  TFSHVYQLCASAGHSALATGQAAHARMLVSGFVPTMFVSNCLLQMYARCGGAAHAHGVFD 90

Query: 317 FAEELDGVSMTVILV-------------------------------GFAQNGFEEEAMQL 345
                D VS   +L                                G+ Q G   + + L
Sbjct: 91  TMPHRDTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNALLSGYCQRGMFRDLVGL 150

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
            ++M + G+  D   ++ +L   G    L LG QIH+L +K+    +    + L++MY K
Sbjct: 151 SIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGLEMDVRAGSALVDMYGK 210

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           C  LED++  F  M  RNSVSW ++IA   ++    + LEL
Sbjct: 211 CRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLEL 251


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 288/527 (54%), Gaps = 38/527 (7%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y KC +M  AVK+F+ +P    VSWN +++GF + G          +++E+ 
Sbjct: 10  VGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSC-------AKAVEV- 61

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSS 209
                               LSL+ +         G+E  EVT  N L+ S  K     S
Sbjct: 62  --------------------LSLMQE--------AGFEPNEVTYSN-LLASCIKARDVHS 92

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R +F ++   +V TW  ++SG  Q + +++ ++LF +M    + P+  T    + +CS 
Sbjct: 93  ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSK 152

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  GRQ+H    +  L +D+ + S L+DMYSKCG +  A  IF    E D V    I
Sbjct: 153 LGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSI 212

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G   +   +EA   F +M + GI    +  ++++      +S+  G+QIH+ ++K  +
Sbjct: 213 ISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGY 272

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N +V + LI+MY+KCG+++D+   F  M  +N V+WN MI  +A++G G KA+EL+E 
Sbjct: 273 DQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEY 332

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M     +P  VTF+++L  CSH GLV+K M F  SM   + I P AEHY C++D +GRAG
Sbjct: 333 MLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAG 392

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
             +E  + I +MP K D ++W+ LL AC +H ++E+GK AAE LF   P +P+PY+L++N
Sbjct: 393 RFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSN 452

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
           IY+  GR  + +     M   GV K  G SWI+ +  V +F+V D +
Sbjct: 453 IYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDL 499



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 192/389 (49%), Gaps = 11/389 (2%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  V +++LL+  +K   + +A  +FD +      +WNT++SG+ +  +       F+R
Sbjct: 72  PN-EVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRR 130

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            ++    Q D+ +  +ILS+C +  +    + +H          ++ V + L+  Y KCG
Sbjct: 131 -MQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCG 189

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                R +F +M  R+V+ W ++ISGL  + L +E    F +M    I P   +Y S + 
Sbjct: 190 QIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMIN 249

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +CS L ++  GRQIH  + K     ++ + SAL+DMY+KCG+++DA   F+     + V+
Sbjct: 250 SCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVA 309

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI- 384
              ++ G+AQNG  ++A++LF  M+    E  P+ V+ +  + G   S GL  +  +   
Sbjct: 310 WNEMIHGYAQNGLGDKAVELFEYMLTT--EQKPDAVTFIAVLTGCSHS-GLVDKAMAFFN 366

Query: 385 -IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNG 440
            +++ +   P   +   LI+   + G   +   +  +M  ++  + W  ++AA   H N 
Sbjct: 367 SMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNA 426

Query: 441 FKALELYEEM-KLEGVEPTDVTFLSLLHA 468
                  E + +++   P+    LS ++A
Sbjct: 427 ELGKCAAEHLFRIDPKNPSPYVLLSNIYA 455



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 177/395 (44%), Gaps = 50/395 (12%)

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245
           G+  +  VGN+LI  Y KC       KVF  +    +++W  +I+G  Q     + +++ 
Sbjct: 3   GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVL 62

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
             M      PN +TY + + +C       + R +H                         
Sbjct: 63  SLMQEAGFEPNEVTYSNLLASC------IKARDVHS------------------------ 92

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
                A  +F+        +   +L G+ Q    ++ ++LF +M    ++ D   ++ +L
Sbjct: 93  -----ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 147

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                   L  G+Q+HS  ++    ++ FV +GL++MYSKCG +  +  +F++M  R+ V
Sbjct: 148 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 207

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
            WNS+I+    H    +A + +++M+  G+ PT+ ++ S++++CS +  +  G +     
Sbjct: 208 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQI---H 264

Query: 486 TEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDS 543
            +V +       Y  + ++DM  + G + +AR F + M +K +++ W  +     IHG +
Sbjct: 265 AQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMK-NIVAWNEM-----IHGYA 318

Query: 544 E--MGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
           +  +G  A E  +  L     P     +A +  CS
Sbjct: 319 QNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 353



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 178/410 (43%), Gaps = 49/410 (11%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  +K G    G  +H++ ++          + + N   + + L+  Y KC Q+  A 
Sbjct: 146 ILSSCSKLGILDFGRQVHSASVR----------FLLHNDMFVASGLVDMYSKCGQIGIAR 195

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +F+ M  RD V WN+++SG   +      F FFK+  E G     ++S+  ++++C R 
Sbjct: 196 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT-ESSYASMINSCSRL 254

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + IH  V   GY++ V VG+ALI  Y KCG+    R  F  M ++N++ W  +I
Sbjct: 255 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 314

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            G  QN L ++ ++LF  M      P+++T+++ +  CS                     
Sbjct: 315 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS--------------------- 353

Query: 290 SDLCIESALMD-MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
                 S L+D   +   S+E+++ I   AE       T ++    + G   E   L  K
Sbjct: 354 -----HSGLVDKAMAFFNSMENSYGIIPLAEHY-----TCLIDALGRAGRFVEVEALIHK 403

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M     + DP +   +L    V  +  LGK     + + D   NP     L N+Y+  G 
Sbjct: 404 M---PCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRID-PKNPSPYVLLSNIYASLGR 459

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
             D+  V + M+ R  V       ++    +G +A  + +++  +G E T
Sbjct: 460 HGDASAVRALMSNRGVVKGRGY--SWIDQKDGVRAFMVADDLGADGGELT 507



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +  F S+  V N LI+MY+KC ++++++KVF  +     VSWN +I  F + G+  KA+E
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +   M+  G EP +VT+ +LL +C     V+        ++      P    +  ++   
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGY 115

Query: 506 GRAGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEMGK--YAAEKLFLAQPD 559
            +     +      RM    V+PD      +L +CS  G  + G+  ++A   FL   D
Sbjct: 116 CQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHND 174


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 202/590 (34%), Positives = 316/590 (53%), Gaps = 31/590 (5%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S H   I+T   FD+           + NSL++ Y KC  +  A  +F+ M  R+ VS
Sbjct: 247 GKSTHERIIRT--GFDSY--------LFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVS 296

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  M+  + + G     F  +KR       + +  +F  ++ +C R E    ++ IH  +
Sbjct: 297 WTVMIWAYAQQGFIRAAFDLYKRM----DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHM 352

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR--NVITWTAVISGLVQNQLYEE 240
              G++ +  +   L+T Y KCGS  S   +F  ++ R  N +TW A+ISGL Q+   ++
Sbjct: 353 VASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQ 412

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLALQSDLCIESALM 299
            L+ F KM L  + PNS+TYL+S+ ACS L  L  GRQ+H  IL +   +++L   +A++
Sbjct: 413 ALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIHEANL--SNAVI 470

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           +MY KCGS+++A   F    E D VS   ++  +AQ+G   +A++ F +M   G   D  
Sbjct: 471 NMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRA 530

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                +   G   SL LGK IHS++  +      +P V   L+ MY++CG L D+  VF 
Sbjct: 531 TYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFW 590

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           R   RN V+W+++IAA A+HG   +AL+L+ EM+L+G +P  +TF +L+ ACS  G+V  
Sbjct: 591 RSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKD 650

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G+ +  SM E + I    +H+  +VD++GRAG L EA   + + P     L    LLGAC
Sbjct: 651 GVFYFVSMVEDYSIPASEDHFGGMVDLLGRAGWLEEAEQVMRKNPC---ALAHAVLLGAC 707

Query: 538 SIHGDSEMG-KYAAEKLFLAQPDS---PAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
            +HGD E G + A   L L   +S    A   ++A +Y  +GRW++ A+  K ++     
Sbjct: 708 HVHGDVERGIRIAQSALELDWKNSASFAASMAMLAELYGAAGRWEDAARVRKAVESRNAR 767

Query: 594 KET-GISWIEIEKQVHSFVVDDK--MHPQADTIHGVLAELLRLMIDEGYV 640
           +E  G SWIE++ +VH F  DD     P+ D I G L  L  L ++EG +
Sbjct: 768 REPGGRSWIEVKNRVHEFGEDDDRLQGPRLDKIRGELQRLSSLAVEEGGI 817



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 251/476 (52%), Gaps = 24/476 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N L+  Y KC  + +A+++F+ +P  +  SW  +++ + + G      G F R ++L 
Sbjct: 63  IQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLF-RKMQLD 121

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D   F+ +L+AC  +      K IH    L G E +V VGNA++  Y KCG     
Sbjct: 122 GTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEA 180

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSG 269
           + VF  +  RN+++W A+I+   QN   ++ +++F  M L G + PN  T++S V ACS 
Sbjct: 181 KAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSN 240

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G+  H  + +    S L + ++L++MY KCGSV+ A  +FE     + VS TV+
Sbjct: 241 LLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVM 300

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKS 387
           +  +AQ GF   A  L+ +M     + +PN V+  AV+        L   +QIH+ ++ S
Sbjct: 301 IWAYAQQGFIRAAFDLYKRM-----DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVAS 355

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWNSMIAAFARHGNGFKALE 445
            F S+  +   L+ MY KCG ++ +  +F  +  R  N+V+WN+MI+  A+HG   +ALE
Sbjct: 356 GFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALE 415

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS--MTEVHRISPRAEHYACVVD 503
            + +M+LEGV P  VT+L+ L ACS +  + +G +      +  +H     A     V++
Sbjct: 416 CFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIH----EANLSNAVIN 471

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           M G+ G L EA     +MP + DV+ W  ++   + HG    G+ A E  F  Q D
Sbjct: 472 MYGKCGSLDEAMDEFAKMPER-DVVSWNTMIATYAQHGS---GRQALE--FFKQMD 521



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 151/497 (30%), Positives = 253/497 (50%), Gaps = 23/497 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N++++ Y KC ++  A  +F+ +P R+ VSWN +++   +NG        F      
Sbjct: 162 VVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLD 221

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + + A+F  ++ AC         K  H  +   G++  + VGN+L+  Y KCGS   
Sbjct: 222 GSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDR 281

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF +M  RNV++WT +I    Q         L+ +M      PN++T+++ + +C  
Sbjct: 282 ARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMD---CEPNAVTFMAVMDSCLR 338

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--DGVSMT 327
            + L    QIH  +      SD  ++  L+ MY KCGSV+ AW IFE  +E   + V+  
Sbjct: 339 PEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWN 398

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLII 385
            ++ G AQ+G  ++A++ F KM   G+   PN V+  A L        L  G+Q+H+ I+
Sbjct: 399 AMISGLAQHGESKQALECFWKMELEGVR--PNSVTYLASLEACSSLNDLTRGRQLHARIL 456

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
             +      ++N +INMY KCG L++++  F++M  R+ VSWN+MIA +A+HG+G +ALE
Sbjct: 457 LENI-HEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALE 515

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH----YACV 501
            +++M LEG      T+L  + AC  V  +  G       + V   +P  E        +
Sbjct: 516 FFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTI---HSIVATAAPCLEQDPGVATAL 572

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
           V M  R G L +A+S   R   + +++ W  L+ AC+ HG  +  +  +   +L   +PD
Sbjct: 573 VTMYARCGSLHDAKSVFWRSHSR-NLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPD 631

Query: 560 SPAPYILMANIYSCSGR 576
           +     L+A   +CS R
Sbjct: 632 ALTFSTLVA---ACSRR 645



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 206/424 (48%), Gaps = 10/424 (2%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L  A +  +L  C   + +   K++H  +   G      + N LI  Y KCG      +V
Sbjct: 24  LQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEV 83

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  +   NV +WTA+I+   +     E L LF KM L    P++  + + + ACS   AL
Sbjct: 84  FELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGAL 143

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            EG+ IH       +++ + + +A++++Y KCG V +A  +FE   E + VS   ++   
Sbjct: 144 NEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAAN 202

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQIHSLIIKSDFTS 391
           AQNG  ++AMQ+F  M   G  + PN  + V  V      L L  GK  H  II++ F S
Sbjct: 203 AQNGHCKDAMQVFHLMDLDG-SVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDS 261

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             FV N L+NMY KCG ++ +  VF +M+ RN VSW  MI A+A+ G    A +LY+ M 
Sbjct: 262 YLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMD 321

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
               EP  VTF++++ +C     + +  +    M         A    C+V M G+ G +
Sbjct: 322 ---CEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMV-ASGFDSDAVLQVCLVTMYGKCGSV 377

Query: 512 IEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
             A S  E +  +  + + W A++   + HG+S+       K+ L +   P     +A++
Sbjct: 378 DSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMEL-EGVRPNSVTYLASL 436

Query: 571 YSCS 574
            +CS
Sbjct: 437 EACS 440



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 113/205 (55%), Gaps = 8/205 (3%)

Query: 340 EEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           E ++Q  +  +K   E + P   +++L       S   GK +H  I+ S    N ++ N 
Sbjct: 7   ELSLQTHINQLKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNH 66

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LI MY+KCG LED+++VF  +   N  SW ++I A+A+ G+  + L L+ +M+L+G +P 
Sbjct: 67  LIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPD 126

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEARS 516
              F ++L ACS  G +N+G    K++ +   ++          +V++ G+ G + EA++
Sbjct: 127 AFVFSTVLTACSSAGALNEG----KAIHDCAVLAGMETQVVGNAIVNLYGKCGRVHEAKA 182

Query: 517 FIERMPVKPDVLVWQALLGACSIHG 541
             ER+P + +++ W AL+ A + +G
Sbjct: 183 VFERLPER-NLVSWNALIAANAQNG 206


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 256/447 (57%), Gaps = 1/447 (0%)

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260
           Y KCG+ S  R VF +M  R+V++WT +I+G  QN +  E + L   M      PN  T+
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 61

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
            S + A         G Q+H +  K     D+ + SAL+DMY++C  ++ A  +F+    
Sbjct: 62  TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 121

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
            + VS   ++ GFA+    E  +  F +M + G        S++   F    +L  G+ +
Sbjct: 122 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 181

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ +IKS      FV N ++ MY+K G + D+ KVF RM  R+ V+WN+M+ A A++G G
Sbjct: 182 HAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLG 241

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +A+  +EE++  G++   +TFLS+L ACSH GLV +G  +   M + + + P  +HY  
Sbjct: 242 KEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKD-YNVQPEIDHYVS 300

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
            VD++GRAGLL EA  F+ +MP++P   VW ALLGAC +H +++MG+YAA+ +F   PD 
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDD 360

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
             P +L+ NIY+ +G+W + A+  K MK  GV KE   SW++IE  VH FV DD  HP++
Sbjct: 361 TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKS 420

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFIL 647
             I+ +  E+   +   GYVPN   +L
Sbjct: 421 GDIYRMWEEINMRIKKAGYVPNTAHVL 447



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 135/253 (53%), Gaps = 13/253 (5%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCG+V DA  +F+     D VS T ++ G+AQN    EA+ L   M++A    +   
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
            +++L   G      +G+Q+H+L +K ++  + +V + L++MY++C  ++ +I VF R+ 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            +N VSWN++IA FAR  +G   L  + EM+  G   T  T+ S+  A + +G + +G  
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQG-- 178

Query: 481 FLKSMTEVHRISPRAEHYACV----VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                   H I    +  A V    + M  ++G +++AR   +RM  K D++ W  +L A
Sbjct: 179 ---RWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD-KRDLVTWNTMLTA 234

Query: 537 CSIHGDSEMGKYA 549
            + +G   +GK A
Sbjct: 235 LAQYG---LGKEA 244



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 165/346 (47%), Gaps = 8/346 (2%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC  + +A  +FD MP RD VSW  +++G+ +N       G     L   F + +  +
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARF-RPNGFT 60

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           FT +L A        + + +H L     ++E+V VG+AL+  Y +C        VF  + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +N ++W A+I+G  +    E  L  F +M          TY S   A + + AL +GR 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H  L K   +    + + ++ MY+K GS+ DA ++F+  ++ D V+   +L   AQ G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ-IHSLIIKSDFTSNPFVNN 397
            +EA+  F ++ K GI++  N ++  L V    +  GL K+  H   +  D+   P +++
Sbjct: 241 GKEAVAHFEEIRKCGIQL--NQIT-FLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDH 297

Query: 398 --GLINMYSKCGDLEDS-IKVFSRMAPRNSVSWNSMIAAFARHGNG 440
               +++  + G L+++ I VF       +  W +++ A   H N 
Sbjct: 298 YVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNA 343



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 11/269 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + LL  +   G   +G  +HA  +K          YN      + ++LL  Y +C
Sbjct: 57  NGFTFTSLLKATGACGGCSIGEQMHALAVK----------YNWDEDVYVGSALLDMYARC 106

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           +QM  A+ +FD +  ++ VSWN +++GF R  + +     F      GF      +++ +
Sbjct: 107 EQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGF-GATHFTYSSM 165

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            SA  R       + +H  +   G +    VGN ++  Y K GS    RKVF  M  R++
Sbjct: 166 FSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDL 225

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +TW  +++ L Q  L +E +  F ++    I  N +T+LS + ACS    + EG+    +
Sbjct: 226 VTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDM 285

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDA 311
           +    +Q ++    + +D+  + G +++A
Sbjct: 286 MKDYNVQPEIDHYVSFVDLLGRAGLLKEA 314


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 200/621 (32%), Positives = 327/621 (52%), Gaps = 53/621 (8%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL---KCDQMRNAVKLFDDMPMRDTVS 122
           +HA  IKT           + N     + LL F +     D +  A+ +F+ +   + + 
Sbjct: 21  IHAQMIKT----------GLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLI 70

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNTM  G   + +       +   + LG    +  +F  +L +C + ++S   + IH  V
Sbjct: 71  WNTMFRGHALSSDPVSAIKLYVCMISLGLLP-NSYTFPFLLKSCAKLKVSKEGQQIHGHV 129

Query: 183 YLCGYE-------------------------------EEVTVGNALITSYFKCGSSSSGR 211
              GYE                                +V    ALIT Y   G   S +
Sbjct: 130 LKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQ 189

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           K+F E+ V++V++W A+ISG       +E L LF +M    + P+  T ++ V AC+   
Sbjct: 190 KMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSG 249

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           ++  GRQ+H  +    L S+L I +AL+D+YSKCG VE A  +F+     D +S   ++ 
Sbjct: 250 SIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIG 309

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIK-- 386
           G+      +EA+ LF +M+++G   +PN V+ +L +      LG    G+ IH  I K  
Sbjct: 310 GYTHLNLYKEALLLFQEMLRSGE--NPNDVT-MLSILPACAQLGAIDFGRWIHVYIDKRI 366

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
              T+   +   LI+MY+KCGD+E + +VF+ M  R   + N+MI  FA HG    A ++
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDI 426

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +  M+  G+EP D+TF+ LL ACSH G+++ G    +SMT+ ++I+P+ EHY C++D++G
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLG 486

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
             GL  EA   I  M ++PD ++W +LL AC +HG+ E+G+  A+KL   +P++P  Y+L
Sbjct: 487 HLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVL 546

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           ++NIY+ +GRW E A     + + G+ K  G S IEI+  VH F++ DK HP+   I+G+
Sbjct: 547 LSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 606

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           L E+  L+ + G+VP+   +L
Sbjct: 607 LEEMEVLLEEAGFVPDTSEVL 627



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/439 (27%), Positives = 213/439 (48%), Gaps = 29/439 (6%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           LD YV  S L+S+  K G +      H    K F+   +++V       V + +L++ Y 
Sbjct: 136 LDLYVHTS-LISMYVKNGRW---KDAH----KVFDGSSHRDV-------VSYTALITGYA 180

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
               + +A K+FD++P++D VSWN ++SG+   G        FK  ++    + D+++  
Sbjct: 181 SRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNV-KPDESTMV 239

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            ++SAC +S    + + +H  +   G    + + NALI  Y KCG   +   +F  +  +
Sbjct: 240 TVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK 299

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           +VI+W  +I G     LY+E L LF +M     NPN +T LS + AC+ L A+  GR IH
Sbjct: 300 DVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIH 359

Query: 281 GILWKL--ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
             + K    + +   + ++L+DMY+KCG +E A Q+F         +   ++ GFA +G 
Sbjct: 360 VYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGR 419

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
              A  +F +M K GIE D      +L        L LG++I   + ++   +    + G
Sbjct: 420 ANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYG 479

Query: 399 -LINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEE-----MK 451
            +I++    G  +++ ++ + M    + V W S++ A   HGN    +EL E      +K
Sbjct: 480 CMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGN----VELGESFAQKLIK 535

Query: 452 LEGVEPTDVTFLSLLHACS 470
           +E   P     LS ++A +
Sbjct: 536 IEPENPGSYVLLSNIYATA 554


>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 699

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 194/597 (32%), Positives = 326/597 (54%), Gaps = 34/597 (5%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
            DN+   S L  + A+     LG  LH+  IK      N+NV++        ++LL  Y 
Sbjct: 98  FDNHTFGSTLKGV-ARAQRLELGQQLHSVMIKMRL---NENVFS-------GSALLDMYA 146

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC ++ +A+ +F  MP  + VSWNT+++G+ R G+ DM F +  R  EL    +D  + +
Sbjct: 147 KCGRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAF-WLMRCQELEGVGIDDGTVS 205

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF-GEMRV 219
            +L+  D      +   +HC +   G E    V NA+IT+Y +C S     +VF G + V
Sbjct: 206 PLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVGAVTV 265

Query: 220 --RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
             R+++TW ++++  + ++       +F++M      P+  +Y   +  CS  +    G 
Sbjct: 266 TCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGE 325

Query: 278 QIHGILWKLALQSDLCIESALMDMY----SKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            +HG++ K   +  + + +AL+ MY    ++C  +EDA +IF   +  D  +   +L G+
Sbjct: 326 SLHGLVIKRGAEVSVPVSNALIAMYLGFDNRC--MEDALRIFFSMDVKDCCTWNSVLAGY 383

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            Q G  E+A++LFV++    +EID    SAV+       +L LG+Q+H L +K  F +N 
Sbjct: 384 VQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSLKVGFDTNK 443

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           +V              +D+ K F   +  N++ WNS+I  +A+HG G  ALEL+  M+ +
Sbjct: 444 YVG-------------KDAKKCFETTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMREK 490

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            V+P  +TF+++L ACSH GLV +G + ++SM     I  R EHYAC VD+ GRAG L E
Sbjct: 491 KVKPDHITFVAVLTACSHNGLVEEGRKIIQSMESDFGIPLRMEHYACAVDLYGRAGYLEE 550

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
            ++ +E MP +PD +V + LLGAC   G+ E+  + A+ L + +P+  + Y+L++++Y  
Sbjct: 551 GKALVETMPFEPDAMVLRTLLGACRSCGNIELASHVAKMLLVLEPEDHSTYVLLSDLYGR 610

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
              W E+A   + M+E GV K  G SWIE++ +VH+F  +D  HPQ+  I+ +L +L
Sbjct: 611 LKMWDEKASVTRLMRERGVKKVPGWSWIEVKNKVHAFNAEDHSHPQSKEIYELLLQL 667



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 242/527 (45%), Gaps = 38/527 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y KC Q+  A++LFD MP RDTVSWN ++SG++   + D  +     ++ +  +
Sbjct: 38  NNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLN-AMRVSGH 96

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  +F   L    R++   + + +H ++      E V  G+AL+  Y KCG       
Sbjct: 97  AFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVDDALV 156

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M   N ++W  +I+G  +    +    L     L  +  +  T    +    G++ 
Sbjct: 157 VFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTLLDGVRF 216

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVI 329
                Q+H  + K  L++   + +A++  YS+C S++DA ++F  A  +   D V+   +
Sbjct: 217 YSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVGAVTVTCRDLVTWNSM 276

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L  +  +  E  A  +F++M   G E D    + V+    +      G+ +H L+IK   
Sbjct: 277 LAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGESLHGLVIKRGA 336

Query: 390 TSNPFVNNGLINMY----SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
             +  V+N LI MY    ++C  +ED++++F  M  ++  +WNS++A + + G    AL 
Sbjct: 337 EVSVPVSNALIAMYLGFDNRC--MEDALRIFFSMDVKDCCTWNSVLAGYVQVGRSEDALR 394

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHR---------IS 492
           L+ +++   VE  D TF +++  CS +  +  G +     LK   + ++           
Sbjct: 395 LFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQVHVLSLKVGFDTNKYVGKDAKKCFE 454

Query: 493 PRAEHYACVVDMV-------GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
             +   A + + +       G+  + +E    +    VKPD + + A+L ACS +G  E 
Sbjct: 455 TTSNDNAIIWNSIIFGYAQHGQGNIALELFYLMREKKVKPDHITFVAVLTACSHNGLVEE 514

Query: 546 GKYAAEKLFLAQPDSPAP-----YILMANIYSCSGRWKERAKAIKRM 587
           G+   + +   + D   P     Y    ++Y  +G  +E    ++ M
Sbjct: 515 GRKIIQSM---ESDFGIPLRMEHYACAVDLYGRAGYLEEGKALVETM 558



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 152/295 (51%), Gaps = 3/295 (1%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           HCL    G   ++   N LIT+Y KC       ++F +M  R+ ++W AVISG V     
Sbjct: 22  HCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADL 81

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           +   +L   M +     ++ T+ S++   +  Q L  G+Q+H ++ K+ L  ++   SAL
Sbjct: 82  DSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSAL 141

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KCG V+DA  +F +  E + VS   ++ G+++ G  + A  L       G+ ID 
Sbjct: 142 LDMYAKCGRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDD 201

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF-- 416
             VS +L +        L  Q+H  I+K    +   V N +I  YS+C  L+D+ +VF  
Sbjct: 202 GTVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNIVCNAIITAYSECCSLQDAERVFVG 261

Query: 417 -SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
              +  R+ V+WNSM+AA+  H     A +++ EM+  G EP D ++  ++  CS
Sbjct: 262 AVTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCS 316



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 2/169 (1%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           +  H L IKS   S+ + +N LI  YSKC  L  ++++F +M  R++VSWN++I+ +   
Sbjct: 19  QATHCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNT 78

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
            +     +L   M++ G    + TF S L   +    +  G +    M ++ R++     
Sbjct: 79  ADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKM-RLNENVFS 137

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            + ++DM  + G + +A      MP + + + W  L+   S  GD +M 
Sbjct: 138 GSALLDMYAKCGRVDDALVVFRYMP-ECNYVSWNTLIAGYSRVGDLDMA 185


>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
 gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
          Length = 745

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 192/594 (32%), Positives = 308/594 (51%), Gaps = 22/594 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  + V  +  LS++A  G  HL   LHA   +            +     + N+L++ Y
Sbjct: 144 VRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRA----------GIATDVFVGNALVTAY 193

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQAS 158
            +   M  A K+F++MP RD VSWN +V G  ++GE        F R L+ G  + D+ S
Sbjct: 194 SRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRPDRIS 253

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
              ++ AC       + + IH      G E  V++ N L+  Y+KCG+    R++F  M 
Sbjct: 254 VCSVIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCARRLFEFMG 313

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+VI+WT V+S        E+ + LF  M    + PN +T+++ + +  G     EG+ 
Sbjct: 314 ERDVISWTTVMS-----MDGEDAVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQM 368

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH +  K +L       ++L+ MY+K   ++DA  IF      + ++   ++ G+AQN  
Sbjct: 369 IHAVCLKTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMPHSEIIAWNALISGYAQNEM 428

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNN 397
            ++A++ F+ M+K     +    S +  V  V+T S+  G+  H   +K    ++ +V+ 
Sbjct: 429 CQDALEAFLAMMKIMKPNETTFASILSAVTAVETVSMAYGQMYHCQALKLGLGASEYVSG 488

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MY+K G LE+S K F     R+ ++W ++I+A ++HGN    + L+ +M   GV P
Sbjct: 489 ALIDMYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDAVVSLFNDMVGSGVAP 548

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             V  LS+L AC + G V+ G E   SM   H      EHYACVVDM+GRAG L EA   
Sbjct: 549 DGVVLLSVLTACRYSGFVSLGREIFDSMAAKHGAELWPEHYACVVDMLGRAGRLEEAEEL 608

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           + +MP  P V   Q+LLGAC IHG++++G+  A  L   +P     Y+L++NIY+  G W
Sbjct: 609 MLQMPSGPSVSALQSLLGACRIHGNTDVGERVASVLTETEPTESGAYVLLSNIYAEKGDW 668

Query: 578 KERAKAIKRMKEMGVDKETGISWIEI-----EKQVHSFVVDDKMHPQADTIHGV 626
              A+  ++M+E GV KE G SW++         ++ F  DD  HPQ++ I+ V
Sbjct: 669 GAVARVRRQMRERGVKKEVGFSWVDAGGAGDSLHLYKFSSDDTTHPQSEEIYRV 722



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/460 (31%), Positives = 243/460 (52%), Gaps = 23/460 (5%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL + Y K +    A ++F     RDT S+NT++S      + D    F  R L  G
Sbjct: 86  VTNSLAARYAKGNSFPAAARVFAAARSRDTRSYNTILSA---TPDPDDALAFAARMLRTG 142

Query: 151 FYQLDQASFTIILS-ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             + D  +FT+ LS A  R E  LV + +H L    G   +V VGNAL+T+Y + G   +
Sbjct: 143 DVRPDAVTFTVTLSLAAGRGEAHLV-RQLHALASRAGIATDVFVGNALVTAYSRGGLMDA 201

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            RKVF EM  R++++W A++ GL Q+ +   E +++F++M   G + P+ ++  S + AC
Sbjct: 202 ARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRPDRISVCSVIPAC 261

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                L  GRQIHG   KL ++  + I + L+ MY KCG+   A ++FEF  E D +S T
Sbjct: 262 GAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCARRLFEFMGERDVISWT 321

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLII 385
            ++   + +G  E+A+ LF  M + G+   PN V+  A+L     D     G+ IH++ +
Sbjct: 322 TVM---SMDG--EDAVSLFNGMRRDGVA--PNEVTFVAMLSSMPGDCPAREGQMIHAVCL 374

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+  +      N LI MY+K   ++D+  +FS M     ++WN++I+ +A++     ALE
Sbjct: 375 KTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMPHSEIIAWNALISGYAQNEMCQDALE 434

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVD 503
            +  M ++ ++P + TF S+L A + V  V+     +    +  ++   A  Y    ++D
Sbjct: 435 AFLAM-MKIMKPNETTFASILSAVTAVETVSMAYGQMYH-CQALKLGLGASEYVSGALID 492

Query: 504 MVGRAGLLIEA-RSFIERMPVKPDVLVWQALLGACSIHGD 542
           M  + G L E+ ++F E   V   ++ W A++ A S HG+
Sbjct: 493 MYAKRGSLEESWKAFGET--VHRSLIAWTAIISANSKHGN 530



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 189/382 (49%), Gaps = 19/382 (4%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L    G      V N+L   Y K  S  +  +VF   R R+  ++  ++S        
Sbjct: 72  HALAVASGLAAFAPVTNSLAARYAKGNSFPAAARVFAAARSRDTRSYNTILSATPDP--- 128

Query: 239 EEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
           ++ L    +M   G + P+++T+  ++   +G       RQ+H +  +  + +D+ + +A
Sbjct: 129 DDALAFAARMLRTGDVRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRAGIATDVFVGNA 188

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEEEAMQLFVKMVKAGIEI 356
           L+  YS+ G ++ A ++FE     D VS   ++ G AQ+G    E +++F++M+K G ++
Sbjct: 189 LVTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQG-DV 247

Query: 357 DPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            P+ +S  +V+   G +  L LG+QIH   +K     +  + N L+ MY KCG    + +
Sbjct: 248 RPDRISVCSVIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCARR 307

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  R+ +SW ++++      +G  A+ L+  M+ +GV P +VTF+++L +      
Sbjct: 308 LFEFMGERDVISWTTVMSM-----DGEDAVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCP 362

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
             +G + + ++     +S +A     ++ M  +   + +AR     MP   +++ W AL+
Sbjct: 363 AREG-QMIHAVCLKTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMP-HSEIIAWNALI 420

Query: 535 GACSIHGDSEMGKYAAEKLFLA 556
              S +  +EM + A E  FLA
Sbjct: 421 ---SGYAQNEMCQDALEA-FLA 438



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 24/203 (11%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           +++AG+ + P   SA +   G D         H+L + S   +   V N L   Y+K   
Sbjct: 44  LLQAGLPLSPTAFSAAVARSGPDAL----PAFHALAVASGLAAFAPVTNSLAARYAKGNS 99

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLH 467
              + +VF+    R++ S+N++++A     +   AL     M   G V P  VTF   L 
Sbjct: 100 FPAAARVFAAARSRDTRSYNTILSATPDPDD---ALAFAARMLRTGDVRPDAVTFTVTLS 156

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERM 521
             +      +G   L  + ++H ++ RA           +V    R GL+  AR   E M
Sbjct: 157 LAA-----GRGEAHL--VRQLHALASRAGIATDVFVGNALVTAYSRGGLMDAARKVFEEM 209

Query: 522 PVKPDVLVWQALLGACSIHGDSE 544
           P + D++ W AL+  C +  D E
Sbjct: 210 PAR-DLVSWNALV--CGLAQDGE 229


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 293/566 (51%), Gaps = 13/566 (2%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           ++ ++L+S Y +C  +R+A  LF  +    D V WN M++   +NG        F R L+
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 149 LGFYQLDQASFTIILSACDRSELSLVS--KMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           LG    D  +F  +  AC  S     S  K  H  +   G   +V V  AL+ +Y +CG 
Sbjct: 224 LGIPP-DLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGE 282

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
               R+ F  M  RN ++WT++I+   Q   L    ++ F  M L  + P   T  +++ 
Sbjct: 283 IDCAREFFAAMPERNAVSWTSMIAAFAQIGHLL--AVETFHAMLLEGVVPTRSTLFAALE 340

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--LDG 323
            C  L      R +  I  ++ + +D+ I + L+  Y++C   EDA ++F   EE   D 
Sbjct: 341 GCEDLHT---ARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDA 397

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
             +T ++  +AQ        +L+   ++ GI  D  +    L       +L  G+QIH+ 
Sbjct: 398 ALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHAC 457

Query: 384 IIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
           +        +  + N +++MY +CG L D+   F  M  R+ +SWN+M++A A+HG    
Sbjct: 458 VAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVED 517

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
             +L+  M  EG +   V FL+LL AC+H GLV  G E   +MT  H + P  EHY C+V
Sbjct: 518 CCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMV 577

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++GR G L +A   ++ MPV PD   W AL+GAC I+GD+E G++AAE++   + +  A
Sbjct: 578 DLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTA 637

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ + NIYS +GRW++ A   K M ++G+ K  G+S IEI  +VH FVV D+ HPQ++ 
Sbjct: 638 AYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEA 697

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+  L  ++  +   GY      +LH
Sbjct: 698 IYAELERVMGAIERAGYRAVTGEVLH 723



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 221/460 (48%), Gaps = 17/460 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           +SL+  YL+C  + +A+ +F  +  +  V W  ++S ++  G        F R L+ G  
Sbjct: 66  SSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEGI- 124

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            LD   F  +LSAC   E     ++IH      G   +  V +AL++ Y +CGS      
Sbjct: 125 ALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 213 VFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           +FG + R  +V+ W A+I+   QN    E L++F +M    I P+ +T++S   ACS   
Sbjct: 185 LFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSP 244

Query: 272 AL--CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +L   + +  H  L +  L SD+ + +AL++ Y++CG ++ A + F    E + VS T +
Sbjct: 245 SLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSM 304

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  FAQ G    A++ F  M+  G+   P   +    + G +  L   + + ++  +   
Sbjct: 305 IAAFAQIG-HLLAVETFHAMLLEGVV--PTRSTLFAALEGCE-DLHTARLVEAIAQEIGV 360

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN-----SMIAAFARHGNGFKAL 444
            ++  +   L+  Y++C   ED+I+VFS    R    W+     +MIA +A+  +     
Sbjct: 361 ATDVAIVTDLVMAYARCDGQEDAIRVFS---AREEGEWDAALVTAMIAVYAQCRDRRSTF 417

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
           +L+      G+ P  + +++ L AC+ +  +++G +    +    R+         +V M
Sbjct: 418 KLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSM 477

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            G+ G L +AR   + MP + D + W A+L A + HG  E
Sbjct: 478 YGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 152/282 (53%), Gaps = 8/282 (2%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           + ++L+  Y +CGS  S   VF ++  ++++ WT +IS  V        + LF ++    
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           I  +++ ++S + ACS  + L  GR IH    +  L     + SAL+ MY +CGS+ DA 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 313 QIFEFAEE-LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            +F   E  LD V    ++   +QNG   EA+++F +M++ GI   P++V+ V       
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIP--PDLVTFVSVFKACS 241

Query: 372 TSLGLG----KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
           +S  L     K  H+ + ++   S+  V   L+N Y++CG+++ + + F+ M  RN+VSW
Sbjct: 242 SSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSW 301

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            SMIAAFA+ G+   A+E +  M LEGV PT  T  + L  C
Sbjct: 302 TSMIAAFAQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 3/245 (1%)

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           + S+L+ MY +CGS+E A  +F        V  TV++  +   G    A+ LF ++++ G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           I +D  +  +VL     +  L  G+ IH   +++       V + L++MY +CG L D+ 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 414 KVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            +F  +    + V WN+MI A +++G+  +ALE++  M   G+ P  VTF+S+  ACS  
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 473 -GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
             L    ++   +  +   +         +V+   R G +  AR F   MP + + + W 
Sbjct: 244 PSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPER-NAVSWT 302

Query: 532 ALLGA 536
           +++ A
Sbjct: 303 SMIAA 307


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 179/535 (33%), Positives = 295/535 (55%), Gaps = 35/535 (6%)

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y KC  +  A K+FD +  RD VSW +M+S +  NG  D     +++ ++    Q D  
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQ-MDADGIQPDSI 59

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +FT  L AC +       K IH  +     E +  VG+ALI  Y +CG  SS R+ F ++
Sbjct: 60  TFTSALLACTKLA---DGKAIHARIVSSNMESDF-VGSALINMYARCGDVSSARQAFEKI 115

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           + ++V+ WT++++  VQ   Y E L L+ +M    ++ + +TY++++ AC+ L AL EG+
Sbjct: 116 QNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGK 175

Query: 278 QIH---------------GILWKLA--------------LQSDLCIESALMDMYSKCGSV 308
            IH                +L   A              L S++ +++AL+ MY+KCGS+
Sbjct: 176 AIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSL 235

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
           E A   FE +   D VS   ++  +AQ+G   EA+ L+  M   G+  D   +++ L   
Sbjct: 236 ELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSAC 295

Query: 369 GVDTSLGLGKQIHSLIIKSD-FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
            +  SL LG++IHS ++K+  F S+  V   L+NMY +CG LE +  +F  M  R+ +SW
Sbjct: 296 AISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSW 355

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
            +M + +A+ G+  + L+LY EM L G+ P ++TF S+L  CSH GL+ +G+E    M  
Sbjct: 356 TAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQS 415

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
            H + P  EH+ C+VD++GR+G L +A + +E MP +PD + W  +LG+C  H D++  K
Sbjct: 416 EHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAK 475

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
            AA ++    P++ + Y L+++I++ +G  +E  +    MKEMG+ K  G S IE
Sbjct: 476 RAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 530



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 146/323 (45%), Gaps = 27/323 (8%)

Query: 70  FIKTFEPFDNQNVYN-VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVS 128
           + K  E    + V+N + +   + N+L++ Y KC  +  A   F+    +D VSWN M+ 
Sbjct: 199 YAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIG 258

Query: 129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC-GY 187
            + ++G        ++     G    D+ +    LSAC  S    + + IH  V     +
Sbjct: 259 AYAQHGLGREALDLYQTMTSQGVLP-DEVTIASSLSACAISGSLQLGREIHSRVLKNQSF 317

Query: 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           +  + V  AL+  Y +CG   + R +F +M  R+V++WTA+ S   Q    ++ L L+++
Sbjct: 318 QSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLE 377

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD----------LCIESA 297
           M L  I PN +T+ S ++ CS    L  G +       L +QS+          LC    
Sbjct: 378 MVLHGIRPNEITFTSILVGCSHAGLLARGVECF-----LEMQSEHEVVPIREHFLC---- 428

Query: 298 LMDMYSKCGSVEDAWQIFE-FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           ++D+  + G + DA  + E    + D V+   +L G  +   + +  +   + VK   E+
Sbjct: 429 MVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVL-GSCKTHSDADTAKRAARRVK---EL 484

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQ 379
           DP   S    +  + T+ GL ++
Sbjct: 485 DPENTSLYSLLSSIFTAAGLPQE 507



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           TS+ VL + V I+  LS  A  G   LG  +H+  +K      NQ+     ++ ++  +L
Sbjct: 277 TSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLK------NQSF---QSSLMVQTAL 327

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL- 154
           ++ Y +C ++  A  +F+DM  RD +SW  M S + + G  D     +   LE+  + + 
Sbjct: 328 VNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLY---LEMVLHGIR 384

Query: 155 -DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
            ++ +FT IL  C  S   L+++ + C + +    E V +
Sbjct: 385 PNEITFTSILVGC--SHAGLLARGVECFLEMQSEHEVVPI 422


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 194/619 (31%), Positives = 323/619 (52%), Gaps = 48/619 (7%)

Query: 66  LHASFIKT---FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           +HA  ++T   F+PF    ++          S LS +   D  RN   LFD +P  +  +
Sbjct: 44  VHARMLRTGLFFDPFSASKLFTA--------SALSSFSTLDYARN---LFDQIPQPNLYT 92

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNT++  +  + +    F  F   L+      ++ +F  ++ A    + S V   +H + 
Sbjct: 93  WNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMA 152

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  ++ + N+L+  Y  CG  S   ++F  +  ++V++W ++IS   Q    E+ L
Sbjct: 153 IKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDAL 212

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LF+KM    + PNS+T +  + AC+    L  GR +   + +  ++ DL + +A++DMY
Sbjct: 213 ELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMY 272

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFA---------------------------- 334
           +KCGSV+DA ++F+   E D  S T++L G+A                            
Sbjct: 273 TKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLIS 332

Query: 335 ---QNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDF 389
              QNG  +EA+ +F ++  + I   P+ V+ V  L       ++ LG  IH  I +   
Sbjct: 333 AYEQNGKPKEALAIFNELQLSKIA-KPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N  + + L++MY+KCG LE +++VF  +  R+   W++MIA    HG G  A++L+ E
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+   V+P  VTF ++L ACSH GLV++G  F   M  V+ + P  +HYAC+VD++GRAG
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA   I  M   P   VW ALLGACS+H + E+G+ A+++L   +P +    +L++N
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSN 571

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +GRW++ ++  K M++  + KE G S IE    VH F+V D  HP +  I+  L E
Sbjct: 572 IYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEE 631

Query: 630 LLRLMIDEGYVPNKRFILH 648
           +   +   GY PNK  +L 
Sbjct: 632 IATKLKSVGYEPNKSHLLQ 650


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 307/556 (55%), Gaps = 9/556 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T I NS LS    C  +  A ++F+     D   +N M+  +  +    +    + +   
Sbjct: 42  TKIINSFLSH--AC--LDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRA 97

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
                 D+ ++  +  AC         K +H ++   GYE +  + ++L+  Y  CG   
Sbjct: 98  CQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIG 157

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
           + ++VF E   ++V+ W A+I+G  +  +  +   +F +M  +  + PN  T +  ++AC
Sbjct: 158 NAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVAC 217

Query: 268 SGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
              + L  GR IHG + K + L+  + +E+AL+++Y KCG ++ A ++F+   E + V  
Sbjct: 218 IESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVW 277

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+ Q G   E ++L  +M  + ++ D   VS VL       +  LG  +H    K
Sbjct: 278 NSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEK 337

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                + F+   LI+MY+KCG +  + KVF +M  RN  +WN++++ +A HG    A+EL
Sbjct: 338 KGIW-DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIEL 396

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + EM+  G  P  +TFL++LHAC+H GLV  G ++   M + ++I PR EHY C+VD++G
Sbjct: 397 FSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLG 456

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGLL EAR  I+ M V+P+V+VW ALL ACSIHG+ E+G++AA  +          Y++
Sbjct: 457 RAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVI 516

Query: 567 MANIYSCSGRWKERAKAIKRMK-EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           +AN+Y+ + R+  R KA++ M  E G+ K  G S IEI   VH FVV DKMHP+++ I+ 
Sbjct: 517 LANLYASAQRFN-RVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYS 575

Query: 626 VLAELLRLMIDEGYVP 641
           VL EL + +   GYVP
Sbjct: 576 VLDELSKKLKMAGYVP 591



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 138/293 (47%), Gaps = 17/293 (5%)

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            P S+  L+ +  C+ +Q L   +QIH      +L     I + +++ +     ++ A Q
Sbjct: 5   TPKSV--LALIETCTNIQQL---KQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQ 59

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM-----VKAGIEIDPNMVSAVLGVF 368
           +F   +E DG     ++  ++ +     A+ ++ KM     +       P +  A    F
Sbjct: 60  VFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQF 119

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
            V+     GK++H +I++  +  + F+ + L+N Y  CG++ ++ +VF     ++ V WN
Sbjct: 120 AVEK----GKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWN 175

Query: 429 SMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           ++I  +AR G    +  +++EM +++ V P + T + L+ AC     +  G      M +
Sbjct: 176 ALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMK 235

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GACSI 539
              +    +  A ++++  + G L  AR   + +P K + +VW +L+ G C I
Sbjct: 236 DMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEK-NTVVWNSLICGYCQI 287


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 189/564 (33%), Positives = 304/564 (53%), Gaps = 11/564 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + ++L   Y    ++ +A K+FD +P  DTV WNT+++G   +   +     F R + 
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES----FARMVC 204

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G  + D  +   +L A        + + +H     CG  E   V   LI+ Y KCG   
Sbjct: 205 DGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMAC 267
           S R +F  M   +++ + A+ISG   N +    + LF + M LGL  PNS T ++ +   
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLW-PNSSTLVALIPVH 323

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           S        + +HG + K    ++  + +A+  ++ +   +E A + F+   E    S  
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G+AQNG  E A+ LF +MVK  +  +P  +S+ L       +L LGK +H +I + 
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           D   N +V   LI+MY+KCG + ++ ++F+ M  +N VSWN+MIA +  HG G +AL+LY
Sbjct: 444 DLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLY 503

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           ++M    + PT  TFLS+L+ACSH GLV +G +  +SMT+ + I+P  EH  C+VD++GR
Sbjct: 504 KDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGR 563

Query: 508 AGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           AG L EA   I   P   V P   VW ALLGAC +H DS++ K A++KLF   P++   Y
Sbjct: 564 AGQLKEAFELISEFPKSAVGPG--VWGALLGACMVHKDSDLAKLASQKLFELDPENSGYY 621

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++N+++   ++ E A   +  K   + K  G + IEI  + H F+  D+ HPQ++ I+
Sbjct: 622 VLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIY 681

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
             L +L   MI+ GY P     L+
Sbjct: 682 SYLEKLTAKMIEAGYRPETEAALY 705


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 201/626 (32%), Positives = 336/626 (53%), Gaps = 57/626 (9%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL---KCDQMRNAVKLFDDMPMRDTVS 122
           +HA  IKT           + N     + LL F +     D    A+ +FD +   + + 
Sbjct: 7   IHAQMIKT----------GLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLI 56

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WNTM  G   + +       +   + LG    D  +F  +L +C +S++    + IH  V
Sbjct: 57  WNTMFRGHALSSDPVSALKLYLVMISLGLLP-DSYTFPFLLKSCAKSKIRKEGQQIHGHV 115

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFG--------------------------- 215
              G++ ++ V  +LI+ Y + G     RKVF                            
Sbjct: 116 LKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQ 175

Query: 216 ----EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGL 270
               E+  ++V++W A+ISG V+   Y+E L+LF +M +   + P+  T ++ V AC+  
Sbjct: 176 KLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQS 235

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            ++  GR +H  +      S+L I +AL+D+YSK G VE A ++F+     D +S   ++
Sbjct: 236 DSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLI 295

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLI--- 384
            G+      +EA+ LF +M+++G    PN V+ +L +      LG   +G+ IH  I   
Sbjct: 296 GGYTHMNLYKEALLLFQEMLRSGET--PNDVT-MLSILPACAHLGAIDIGRWIHVYINKK 352

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF-SRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +K   T+   +   LI+MY+KCGD++ + +VF S M+ R+  +WN+MI+ FA HG    A
Sbjct: 353 LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
            +++  M++ G+EP D+TF+ LL ACSH G+++ G    +SMT  + I+P+ EHY C++D
Sbjct: 413 FDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMID 472

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++G +GL  EA   I  MP++PD ++W +LL AC IHG+ E+G+  A+KL   +P +   
Sbjct: 473 LLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGS 532

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKET-GISWIEIEKQVHSFVVDDKMHPQADT 622
           Y+L++NIY+ +GRW E AK    + + G+ K+  G S IEI+  VH F++ DK+HPQ   
Sbjct: 533 YVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNRE 592

Query: 623 IHGVLAELLRLMIDEGYVPNKRFILH 648
           I+G+L E+  L+ + G+VP+   +L 
Sbjct: 593 IYGMLEEMEVLLEEAGFVPDTSEVLQ 618


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 306/572 (53%), Gaps = 34/572 (5%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A+ +F+ +P  +T   N  +    R+ E +     ++R    G   +D+ SF  +L A  
Sbjct: 75  ALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGL-AVDRFSFPPLLKALS 133

Query: 168 RSELSLVSKM-IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           R + SLV  + IH L    G++ +  V   L+  Y  CG  +  R +F +M  R+V+TW+
Sbjct: 134 RVK-SLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWS 192

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I G  Q+ L+ + L LF +M    + P+ +   + + AC     L  G+ IH  + + 
Sbjct: 193 IMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMEN 252

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            +  D  ++SAL+ MY+ CGS++ A  +FE     + V+ T ++ G+++ G  E A  +F
Sbjct: 253 NIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVF 312

Query: 347 VKMVKAGIEIDPNMVSA---------VLGVFGVDTSLGL--------------------- 376
            +MVK  +     M+S           L +F    SLG+                     
Sbjct: 313 NQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALD 372

Query: 377 -GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
             K IH  + K+ F     +NN LI MY+KCG LE + ++F +M  +N +SW  MI+AFA
Sbjct: 373 QAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFA 432

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
            HG+   AL  + +M+ E +EP  +TF+ +L+ACSH GLV +G +   SM   H I+P+ 
Sbjct: 433 MHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKH 492

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
            HY C+VD+ GRA LL EA   +E MP+ P+V++W +L+ AC +HG+ E+G++AA++L  
Sbjct: 493 VHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLE 552

Query: 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             PD    ++ ++NIY+ + RW++  +  K MK  G+ KE G S  E+  ++H F+V D+
Sbjct: 553 LDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADR 612

Query: 616 MHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            H  AD I+  L E++  +   GY PN   IL
Sbjct: 613 SHKHADEIYEKLYEVVSKLKLVGYSPNTCSIL 644



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 195/387 (50%), Gaps = 46/387 (11%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +   L+  Y  C ++  A  +FD M  RD V+W+ M+ G+ ++G F+     F+   E+ 
Sbjct: 159 VQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFE---EMK 215

Query: 151 FYQL--DQASFTIILSACDRSELSLVSKMIH----------------CLVYL---CGYE- 188
            Y +  D+   + +LSAC R+      KMIH                 LV +   CG   
Sbjct: 216 NYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMD 275

Query: 189 ------EEVTVGN-----ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
                 E++T  N     A++T Y K G   + R VF +M  ++++ W+A+ISG  ++  
Sbjct: 276 LALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDS 335

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            +E L LF +M    I P+ +T LS + AC+ L AL + + IH  + K      L I +A
Sbjct: 336 PQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNA 395

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L++MY+KCGS+E A +IF+     + +S T ++  FA +G    A++ F +M    IE  
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIE-- 453

Query: 358 PNMVSAVLGVFGVDTSLGL---GKQI-HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           PN ++ V GV    +  GL   G++I +S+I + + T        +++++ +   L +++
Sbjct: 454 PNGITFV-GVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREAL 512

Query: 414 KVFSRM--APRNSVSWNSMIAAFARHG 438
           ++   M  AP N + W S++AA   HG
Sbjct: 513 ELVEAMPLAP-NVIIWGSLMAACRVHG 538



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
            P   V   ++++ Y K  Q+ NA  +F+ M  +D V W+ M+SG+  +         F 
Sbjct: 285 TPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFN 344

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
               LG  + DQ +   +++AC        +K IH  V   G+   + + NALI  Y KC
Sbjct: 345 EMQSLGI-KPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKC 403

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           GS    R++F +M  +NVI+WT +IS    +      L+ F +M    I PN +T++  +
Sbjct: 404 GSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVL 463

Query: 265 MACSGLQALCEGRQI 279
            ACS    + EGR+I
Sbjct: 464 YACSHAGLVEEGRKI 478



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           HLG    A +I  F    ++N +    A  I N+L+  Y KC  +  A ++FD MP ++ 
Sbjct: 367 HLGALDQAKWIHLFV---DKNGFG--GALPINNALIEMYAKCGSLERARRIFDKMPRKNV 421

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           +SW  M+S F  +G+      FF + +E    + +  +F  +L AC  + L
Sbjct: 422 ISWTCMISAFAMHGDAGSALRFFHQ-MEDENIEPNGITFVGVLYACSHAGL 471



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 33/220 (15%)

Query: 372 TSLGLGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
           TSL   KQ+H+ I++S    S   +   +I+  +    L+ ++ VF+ +    +   N  
Sbjct: 34  TSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHLCNRF 93

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           +   +R     K L +YE M+ +G+     +F  LL A S V  + +G+       E+H 
Sbjct: 94  LRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL-------EIHG 146

Query: 491 ISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL-GACS--IHG 541
           ++ +            +V M    G + EAR   ++M    DV+ W  ++ G C   +  
Sbjct: 147 LAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKM-FHRDVVTWSIMIDGYCQSGLFN 205

Query: 542 DS-----EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           D+     EM  Y  E      PD     ++++ + S  GR
Sbjct: 206 DALLLFEEMKNYNVE------PDE----MMLSTVLSACGR 235


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 335/605 (55%), Gaps = 54/605 (8%)

Query: 77  FDNQNVYNVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           FDN  +   P  T+  WN+++S Y +  + R+A+ LFD MP R+TVS+N M+SG+++NG 
Sbjct: 42  FDNTPL---PQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGM 98

Query: 136 -------FD------------MGFGFFKRSL----ELGFYQLDQ---ASFTIILSAC-DR 168
                  FD            M  G+ +  +    E  F+++ +    S+T+++      
Sbjct: 99  VADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE 158

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAV 228
           S +    K+   +      E++V V   +I  Y + G     R++F EM+VRNV TWT +
Sbjct: 159 SRIDDAKKLFDMIP-----EKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTM 213

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL---WK 285
           +SG  +N   +   KLF  M       N +++ + +M  +    + E  ++   +   W 
Sbjct: 214 VSGYAKNGRVDVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWI 269

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
           +A     C E  L   +   G +  A  +FE  +E D  +   ++  F + G + EA+ L
Sbjct: 270 VA-----CNEMILQ--FGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGL 322

Query: 346 FVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
           F +M + G+ ++ P+M+S VL V     SL  G+Q+H+ +++S+F  + +V + LI MY 
Sbjct: 323 FARMQREGVALNFPSMIS-VLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYV 381

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           KCGDL  +  +F+R   ++ V WNSMI  +++HG G +AL ++ +M   GV+P +VTF+ 
Sbjct: 382 KCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIG 441

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACS+ G V +G E  ++M   +++ P  EHYAC+VD++GRAG + EA   +E+MP++
Sbjct: 442 VLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPME 501

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
           PD +VW ALLGAC  H   ++ + A EKL   +P +  PY+L++++Y+  GRW++  + +
Sbjct: 502 PDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRD-VEVL 560

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFV-VDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
           ++     V K  G SWIE+EK+VH F   D K HP+   I  +L +L   + + GY P+ 
Sbjct: 561 RKKINRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDG 620

Query: 644 RFILH 648
            F+LH
Sbjct: 621 SFVLH 625



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 117/301 (38%), Gaps = 62/301 (20%)

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA--EELDGVSMTVILVGFAQNGFEEEA 342
           ++     LC  ++ +  Y + G + +A ++F+     +    S   ++  + ++    +A
Sbjct: 12  RMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDA 71

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M +                                        N    NG+I+ 
Sbjct: 72  LLLFDQMPQ---------------------------------------RNTVSFNGMISG 92

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y K G + D+ KVF  M  RN VSW SM+  + + G   +A +L+ EM    V    V  
Sbjct: 93  YVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMI 152

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG---RAGLLIEARSFIE 519
             LL        ++   +    + E        +    V +M+G   + G L EAR   +
Sbjct: 153 GGLLKESR----IDDAKKLFDMIPE--------KDVVVVTNMIGGYCQVGRLDEARELFD 200

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWK 578
            M V+ +V  W  ++   + +G  ++    A KLF   P+ +   +  M   Y+ SGR K
Sbjct: 201 EMKVR-NVFTWTTMVSGYAKNGRVDV----ARKLFEVMPERNEVSWTAMLMGYTQSGRMK 255

Query: 579 E 579
           E
Sbjct: 256 E 256



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 17/196 (8%)

Query: 396 NNGLINMYSKCGDLEDSIKVF--SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           N   I+ Y + GD+ ++ KVF  + +  R   SWN+M++A+        AL L+++M   
Sbjct: 22  NTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMP-- 79

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
             +   V+F  ++      G+V    +    M E + +S     +  +V    + G++ E
Sbjct: 80  --QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WTSMVRGYVQEGMVEE 132

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL-MANIYS 572
           A      MP + +V+ W  ++G   +  +S +    A+KLF   P+     +  M   Y 
Sbjct: 133 AEKLFWEMP-RRNVVSWTVMIGG--LLKESRIDD--AKKLFDMIPEKDVVVVTNMIGGYC 187

Query: 573 CSGRWKERAKAIKRMK 588
             GR  E  +    MK
Sbjct: 188 QVGRLDEARELFDEMK 203


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/576 (32%), Positives = 312/576 (54%), Gaps = 40/576 (6%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A+ +F+ +   + + WNTM  G   + +       +   + LG    +  +F  +L +C 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLP-NSYTFPFLLKSCA 74

Query: 168 RSELSLVSKMIHCLVYLCGYE-------------------------------EEVTVGNA 196
           + + S     IH  V   GYE                                +V    A
Sbjct: 75  KLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTA 134

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           L+T Y   G   S R +F E+ V++V++W A+ISG V+   Y+E L+LF +M    + P+
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPD 194

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T ++ + A +   ++  GRQ+H  +      S+L I +AL+D YSKCG +E A  +F 
Sbjct: 195 ESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG- 375
                D +S  +++ G+      +EA+ LF +M+++G    PN V+ +L +      LG 
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE--SPNDVT-MLSILHACAHLGA 311

Query: 376 --LGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             +G+ IH  I K     T+   +   LI+MYSKCGD+E + +VF+ M  ++  +WN+MI
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMI 371

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             FA HG    A +++  M+   ++P D+TF+ LL ACSH G+++ G    +SMT  ++I
Sbjct: 372 FGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKI 431

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           +P+ EHY C++D++G +GL  EA   I  M ++PD ++W +LL AC +HG+ E+G+  A+
Sbjct: 432 TPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQ 491

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
            LF  +P++P  Y+L++NIY+ +GRW E A+    + + G+ K  G S IEI+  VH F+
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFI 551

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           + DK HP+   I+G+L E+  L+ + G+VP+   +L
Sbjct: 552 IGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVL 587


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/632 (31%), Positives = 318/632 (50%), Gaps = 57/632 (9%)

Query: 16  FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE 75
           F  S  +  ++  +QDP    ++L     V  +R L     +       +L A++ +   
Sbjct: 22  FYDSAAAVDVSGHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGM 81

Query: 76  PFDNQNVYNVPNA---TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
             D + +++ P+A    V W +LLS Y +  ++  A  LF  MP R+ VSWNTM+  +  
Sbjct: 82  LHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTS 141

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEV 191
            G     +  F      G    D  S+ I+L+A  RS  +    K+   +      E  V
Sbjct: 142 AGRVRDAWTLFD-----GMPVRDAGSWNILLAALVRSGNMDKARKLFDRMP-----ERNV 191

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
                ++    + GS    R +F  M  RNV++W A+ISG  +N   +E   LF+KM   
Sbjct: 192 MAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKM--- 248

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
              P                                   D+   + ++  + +   +E A
Sbjct: 249 ---PTR---------------------------------DIASWNIMITGFIQDRDLERA 272

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +F+     + ++ T ++ G+ Q+   E A+Q+F  M+  GI   PN V+ +  V    
Sbjct: 273 QDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIR--PNQVTFLGAVDACS 330

Query: 372 TSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
              GL  G+Q+H +I K+ F  + F+ + L+N+Y+KCG++  + KVF     ++ +SWN 
Sbjct: 331 NLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNG 390

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MIAA+A HG G +A+ LYE+M+ +G +P DVT++ LL ACSH GLV++G+   + M +  
Sbjct: 391 MIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDR 450

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I+ R EHY C++D+  RAG L +A+  I  + V+P   VW ALLG C+ HG+  +G  A
Sbjct: 451 SIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLA 510

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           A  L  A+P++   Y L+ NIY+ +G+WKE AK    M + G+ K+ G SWIE+E +VH 
Sbjct: 511 ARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHV 570

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           FV  DK H ++D I+ +L ++  +M     VP
Sbjct: 571 FVSRDKSHSESDLINSLLQDIHDIMRMACTVP 602


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 311/557 (55%), Gaps = 20/557 (3%)

Query: 107 NAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTIIL 163
           N   LF+    R D  SWN++++   R G+       F   R L++   + ++++F   +
Sbjct: 33  NLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDI---KPNRSTFPCAI 89

Query: 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
            +C         K  H    + G+E ++ V +ALI  Y KCG  S+ R +F E+  RN++
Sbjct: 90  KSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIV 149

Query: 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN---------SLTYLSSVMACSGL--QA 272
           TWT++I+G VQN    E L +F +        N         S+  +S + ACS +  +A
Sbjct: 150 TWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKA 209

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           + EG  +HG+  K+ L   + +E+ L+D Y+KCG V  + ++F+   E D VS   ++  
Sbjct: 210 VSEG--VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAV 267

Query: 333 FAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           +AQNG   +A ++F  M+KAG  + +   +S +L     + +L +G  +H  +IK  + +
Sbjct: 268 YAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN 327

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N  +   +I+MY KCG  E +   F  M  +N  SW +MIA +  HG   +AL+++ +M 
Sbjct: 328 NVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMI 387

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             GV+P  +TF+S+L ACSH G + +G  +  +M+  + + P  EHY C+VD++GRAG +
Sbjct: 388 WAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYI 447

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA + I+ M V+ D ++W +LL AC IH D E+ + +A +LF   P +   Y+L+ANIY
Sbjct: 448 KEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIY 507

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           + +GRWK+  +    +K+ G+ K  G S +E++ +VH F+V DK HPQ + I+  L EL 
Sbjct: 508 ADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELS 567

Query: 632 RLMIDEGYVPNKRFILH 648
             + + GYVPN   +LH
Sbjct: 568 VKLQEAGYVPNMASVLH 584



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 208/402 (51%), Gaps = 25/402 (6%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+   +   + ++L+  Y KC ++ NA  LFD++P R+ V+W ++++G+++N +      
Sbjct: 110 VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALM 169

Query: 142 FFKRSL---------ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
            FK  L         E+G   +D  +   +LSAC R     VS+ +H +    G ++ + 
Sbjct: 170 VFKEFLFEKSEGNGEEVG-TSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMG 228

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLG 251
           V N L+ +Y KCG  S  RKVF +M  ++V++W ++I+   QN L  +  ++F  M   G
Sbjct: 229 VENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAG 288

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
               N +T  + ++AC+   AL  G  +H  + K+   +++ + ++++DMY KCG  E A
Sbjct: 289 GGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMA 348

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
              F+  +E +  S T ++ G+  +GF  EA+ +F +M+ AG++  PN ++  + V    
Sbjct: 349 RNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK--PNYIT-FISVLAAC 405

Query: 372 TSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVS 426
           +  G  ++       +  ++   P V +   ++++  + G ++++  +   M   R+ V 
Sbjct: 406 SHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVL 465

Query: 427 WNSMIAAFARHGNGFKALELYE--EMKLEGVEPTDVTFLSLL 466
           W S++AA   H    K +EL E    +L  ++P++  +  LL
Sbjct: 466 WGSLLAACRIH----KDVELAEISARELFKLDPSNCGYYVLL 503


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 167/472 (35%), Positives = 280/472 (59%), Gaps = 2/472 (0%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +   G+E+ + + +AL+  Y KC +    ++VF  M   + ++WT++ISG  +N  
Sbjct: 123 IHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGR 182

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKLALQSDLCIES 296
            +E +  F +M    I PN +TY+S + AC+GL+ + +   + H  + KL       + S
Sbjct: 183 GKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVS 242

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
            L+D YSKCG ++ A  +F    E D +    ++ G++QN F EEA++LFV+M   G+  
Sbjct: 243 CLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNP 302

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
             + ++++L   G  T L  G+Q+HSL+ K    SN FV + L++MYSKCG ++++  VF
Sbjct: 303 TDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVF 362

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLV 475
            +   +N+V W SMI  +A+ G G + L L+E +   EG  P  + F ++L AC+H G +
Sbjct: 363 DQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGFL 422

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
           +KG+++   M   + + P  + YAC+VD+  R G L +A+  +E +P +P+ ++W + L 
Sbjct: 423 DKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFLS 482

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           +C ++G++E+G+ AA+KLF  +P S APY+ MA+IY+ +G W E  +  K MK+ G+ K 
Sbjct: 483 SCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRKS 542

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            G SW+E++K+VH F+V D  HP++  I   L  L   M + GY P + F L
Sbjct: 543 AGWSWVEVDKRVHVFLVADASHPRSRDICVELERLNLEMKEVGYTPQQIFEL 594



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 224/443 (50%), Gaps = 20/443 (4%)

Query: 51  LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           L+  AK  ++ LG  +HA  I+T   F++    N        ++L+  Y KCD + +A +
Sbjct: 108 LNSCAKLLNWGLGVQIHARIIQT--GFEDNLFLN--------SALVDLYAKCDAIVDAKR 157

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           +FD M   D VSW +++SGF +NG       FFK  L     + +  ++  ++SAC   E
Sbjct: 158 VFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQI-KPNCVTYVSVISACTGLE 216

Query: 171 LSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                  ++H  V   G+  +  V + LI  Y KCG       +FG    R+ I + ++I
Sbjct: 217 TIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMI 276

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
           SG  QN   EE LKLFV+M    +NP   T  S + AC  L  L +GRQ+H ++ K+  +
Sbjct: 277 SGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSE 336

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           S++ + SAL+DMYSKCGS+++A  +F+ A E + V  T ++ G+AQ+G   E + LF ++
Sbjct: 337 SNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERL 396

Query: 350 V-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKC 406
           V + G   D    +AVL        L  G    +  ++ D+   P ++    L+++Y + 
Sbjct: 397 VTEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQ-MRRDYGLVPDLDQYACLVDLYVRN 455

Query: 407 GDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLS 464
           G L  + ++   +    NSV W S +++   +G      E  +  KL  +EP +   +++
Sbjct: 456 GHLRKAKELMEAIPCEPNSVMWGSFLSSCKLYGEAELGREAAD--KLFKMEPCSTAPYVA 513

Query: 465 LLHACSHVGLVNKGMEFLKSMTE 487
           +    +  GL ++ +E  K M +
Sbjct: 514 MASIYAQAGLWSEVVEIRKLMKQ 536



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 182/339 (53%), Gaps = 7/339 (2%)

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E L+ F +M+     P      +++ +C+ L     G QIH  + +   + +L + SAL
Sbjct: 83  REALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSAL 142

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +D+Y+KC ++ DA ++F+  E+ D VS T I+ GF++NG  +EA+  F +M+  G +I P
Sbjct: 143 VDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEML--GSQIKP 200

Query: 359 NM---VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           N    VS +    G++T       +H+ ++K  F    FV + LI+ YSKCG ++ ++ +
Sbjct: 201 NCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLL 260

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F     R+++ +NSMI+ ++++  G +AL+L+ EM+  G+ PTD T  S+L+AC  + ++
Sbjct: 261 FGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLTIL 320

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +G + + S+             + ++DM  + G + EAR   ++  V+ + ++W +++ 
Sbjct: 321 QQGRQ-VHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFDQ-AVEKNTVLWTSMIT 378

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             +  G    G    E+L   +  +P      A + +C+
Sbjct: 379 GYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACN 417



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 98/181 (54%)

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           A++    EA++ F +M  +G +    ++   L       + GLG QIH+ II++ F  N 
Sbjct: 77  AKHANVREALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 136

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+N+ L+++Y+KC  + D+ +VF  M   + VSW S+I+ F+++G G +A+  ++EM   
Sbjct: 137 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 196

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            ++P  VT++S++ AC+ +  +      L +         +    +C++D   + G + +
Sbjct: 197 QIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 256

Query: 514 A 514
           A
Sbjct: 257 A 257


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/555 (33%), Positives = 295/555 (53%), Gaps = 8/555 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK-- 144
           N+  + ++L+  Y+K  +      +F++M  R+ VSW  ++ G +  G    G  +F   
Sbjct: 184 NSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEM 243

Query: 145 -RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFK 203
            RS ++G+   D  +F + L A   S L    K IH      G+ E   V N L T Y K
Sbjct: 244 WRS-KVGY---DSHTFAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSK 299

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           C       ++FG+M   +V++WT +I   VQ    E  L  F +M    ++PN  T+ S 
Sbjct: 300 CRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASV 359

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC+ L     G QIHG   +L L   L + ++++ +YSKCG +++A  +F+     D 
Sbjct: 360 ISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEASLVFDGMTRKDI 419

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           +S + I+  + Q    +EA      M + G + +   +++VL V G    L  GKQ+H+ 
Sbjct: 420 ISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAY 479

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            +         V++ LI+MYS+ G+L+++ K+F  +   + VSW +MI  +A HG   +A
Sbjct: 480 ALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEA 539

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           + L+E +   G+ P  VTF+ +L AC+H GLV+ G  + K MT  ++I+P  EHY C++D
Sbjct: 540 ISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYKLMTNEYQIAPSKEHYGCIID 599

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++ RAG L EA   +  MP   D +VW  LL AC  HGD +   +AAE++    P+S   
Sbjct: 600 LLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDLDRAIWAAEQMLRLHPNSAGA 659

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           +I +ANIYS SGR +E A   K MK  GV KE G SWI    Q+++FV   + HP +  I
Sbjct: 660 HITLANIYSASGRREEAAHVRKLMKSKGVIKEPGWSWINSNDQLNTFVAGVQSHPLSKQI 719

Query: 624 HGVLAELLRLMIDEG 638
             +L ELLR  I + 
Sbjct: 720 TTIL-ELLRTSIGDA 733



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 170/370 (45%), Gaps = 6/370 (1%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-I 253
           N+ +    K G     R +F +M  R+ I+WT +I+G V      E L LF  M +   +
Sbjct: 88  NSQLKQLMKLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGL 147

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
             +      ++ AC+    +  G  +HG   K  L + + + SAL+DMY K G  E    
Sbjct: 148 QKDQFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCS 207

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +FE     + VS T ++VG    G   + +  F +M ++ +  D +  +  L        
Sbjct: 208 VFENMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGL 267

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  GK IH+  IK  F    +V N L  MYSKC   +  +++F +M+  + VSW ++I  
Sbjct: 268 LHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMT 327

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           + + G+  +AL+ ++ M+   V P + TF S++ AC+++ +   G +       +  +  
Sbjct: 328 YVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDA 387

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
            +   + ++ +  + GLL EA    + M  + D++ W  ++   S++      K A   L
Sbjct: 388 LSVSNS-IITLYSKCGLLQEASLVFDGM-TRKDIISWSTII---SVYCQGSHAKEAFNYL 442

Query: 554 FLAQPDSPAP 563
                + P P
Sbjct: 443 SWMSREGPKP 452



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 121/285 (42%), Gaps = 14/285 (4%)

Query: 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM-VKAGIEIDPNMVS 362
           K G + +A  +F      D +S T ++ G+       EA+ LF  M V +G++ D  +VS
Sbjct: 96  KLGKICEARDMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVS 155

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
             L    +  ++  G+ +H   +KS   ++ FV++ L++MY K G  E    VF  M  R
Sbjct: 156 VALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTR 215

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           N VSW ++I      G     L  + EM    V     TF   L A +  GL++ G    
Sbjct: 216 NVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAI- 274

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK---PDVLVWQALLGACSI 539
                   I       A VV+ +G          ++ R+  K   PDV+ W  L+     
Sbjct: 275 ----HAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQ 330

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG----RWKER 580
            GD E    A +++  +   SP  Y   + I +C+     +W E+
Sbjct: 331 MGDEERALDAFKRMRKSDV-SPNEYTFASVISACANLAITKWGEQ 374


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/514 (33%), Positives = 288/514 (56%), Gaps = 4/514 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L++ Y +C  + +A + F+ +  +  V W ++++ +++   +      + R    G
Sbjct: 280 VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEG 339

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
            +  D  ++   L AC         K IH  V+ CG++  + V  AL+T Y KCG   + 
Sbjct: 340 VHA-DGVTYVTALGACASLGALKEGKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAA 397

Query: 211 RKVFGEMRV-RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           R VF  +R  RNV  WTA+IS   Q    +E L+L+ +M      PN  T+ + + ACS 
Sbjct: 398 RAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSS 457

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  G +IHG +    L S++ +++AL+ MY+KCGS+E A   FE +   D VS   +
Sbjct: 458 SGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAM 517

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD- 388
           +  +AQ+G   EA+ L+  M   G+  D   +++ L    +  SL LG++IHS ++K+  
Sbjct: 518 IGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQS 577

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F S+  V   L+NMY +CG LE +  +F  M  R+ +SW +M +A+A+ G+  + L+LY 
Sbjct: 578 FRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYL 637

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM L G+ P ++TF S+L  CSH GL+ +G+E    M   H + P  EH+ C+VD++GR+
Sbjct: 638 EMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRS 697

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A + +E MP +PD + W  +LG+C  H D++  K AA ++    P++ + Y L++
Sbjct: 698 GRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLS 757

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           +I++ +G  +E  +    MKEMG+ K  G S IE
Sbjct: 758 SIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 246/456 (53%), Gaps = 10/456 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD +  RD VSW +M+S +  NG  D     +++ ++  
Sbjct: 183 LQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQ-MDAD 241

Query: 151 FYQLDQASFTIILSACDRSELSLV-SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
             Q D  +FT  L AC +    LV  K IH  +     E +  VG+ALI  Y +CG  SS
Sbjct: 242 GIQPDSITFTSALLACTK----LVDGKAIHARIVSSNMESDF-VGSALINMYARCGDVSS 296

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+ F +++ ++V+ WT++++  VQ   Y E L L+ +M    ++ + +TY++++ AC+ 
Sbjct: 297 ARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACAS 356

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV-SMTV 328
           L AL EG+ IH  +++   QS L + +AL+ MY+KCG ++ A  +F    +   V   T 
Sbjct: 357 LGALKEGKAIHSRVFECGFQS-LVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTA 415

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++  +AQ G  +EA++L+ +MV  G   +    S VL        L  G +IH  +  S+
Sbjct: 416 MISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSE 475

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN  V N L+ MY+KCG LE +   F     ++ VSWN+MI A+A+HG G +AL+LY+
Sbjct: 476 LASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQ 535

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M  +GV P +VT  S L AC+  G +  G E    + +             +V+M GR 
Sbjct: 536 TMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRC 595

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           G L  ARS  E M  + DVL W A+  A +  G ++
Sbjct: 596 GRLETARSMFEDMGQR-DVLSWTAMTSAYAQQGHAD 630



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 221/432 (51%), Gaps = 18/432 (4%)

Query: 153 QLDQAS------FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           QLDQ        +  +L  C R       K++H  +   G+     +GN LI  Y  CG 
Sbjct: 33  QLDQRRHGYVELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGE 92

Query: 207 SSSGRKVFGEM-RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
               R  F     ++ V  +  ++S   +N L+   L+L+ +M      P+ +TY   + 
Sbjct: 93  IHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLG 152

Query: 266 ACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           +CS + +L E R+IH  + +    ++ +L +++AL++MY KCGSVE+A ++F+  +  D 
Sbjct: 153 SCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDA 212

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTSLGLGKQIHS 382
           VS T ++  +A NGF +EA+ L+ +M   GI+ D     SA+L      T L  GK IH+
Sbjct: 213 VSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLAC----TKLVDGKAIHA 268

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            I+ S+  S+ FV + LINMY++CGD+  + + F ++  ++ V W S++ A+ +  +  +
Sbjct: 269 RIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYRE 327

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL+LY  M  EGV    VT+++ L AC+ +G + +G      + E    S     +  ++
Sbjct: 328 ALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVV--HTALL 385

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
            M  + G L  AR+   R+  K +V  W A++ A +  G ++      +++ +A+   P 
Sbjct: 386 TMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQM-VAEGTRPN 444

Query: 563 PYILMANIYSCS 574
            Y     + +CS
Sbjct: 445 EYTFSNVLAACS 456



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           TS+ VL + V I+  LS  A  G   LG  +H+  +K      NQ+     ++ ++  +L
Sbjct: 538 TSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLK------NQSF---RSSLMVQTAL 588

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL- 154
           ++ Y +C ++  A  +F+DM  RD +SW  M S + + G  D     +   LE+  + + 
Sbjct: 589 VNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLY---LEMVLHGIR 645

Query: 155 -DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
            ++ +FT IL  C  S   L+++ + C + +    E V +
Sbjct: 646 PNEITFTSILVGC--SHAGLLARGVECFLEMQSEHEVVPI 683


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/590 (31%), Positives = 315/590 (53%), Gaps = 10/590 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
            G ++HA F+   +  ++ ++ ++       NSL+  Y+KC Q+  A  LFD MP+R+ V
Sbjct: 30  FGKAMHAQFLIRNQTSNHSHISHL-------NSLVHLYVKCGQLGLARNLFDAMPLRNVV 82

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SWN +++G+L  G        FK  + L     ++  FT  LSAC            H L
Sbjct: 83  SWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGL 142

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM---RVRNVITWTAVISGLVQNQLY 238
           ++  G      V +AL+  Y +C       +V   +    V ++ ++ +V++ LV++   
Sbjct: 143 LFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRG 202

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           EE +++  +M    +  + +TY+  +  C+ ++ L  G ++H  L +  L  D  + S L
Sbjct: 203 EEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSML 262

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY KCG V +A  +F+  +  + V  T ++  + QNG+ EE++ LF  M + G   + 
Sbjct: 263 IDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNE 322

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
              + +L       +L  G  +H+ + K  F ++  V N LINMYSK G ++ S  VF+ 
Sbjct: 323 YTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTD 382

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  R+ ++WN+MI  ++ HG G +AL+++++M      P  VTF+ +L A SH+GLV +G
Sbjct: 383 MIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEG 442

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
             +L  +    +I P  EHY C+V ++ RAGLL EA +F++   VK DV+ W+ LL AC 
Sbjct: 443 FYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACH 502

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +H + ++G+  AE +    P     Y L++N+Y+ + RW       K M+E  + KE G 
Sbjct: 503 VHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGA 562

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SW++I   +H F+ +   HP++  I+  + +LL L+   GYVPN   +LH
Sbjct: 563 SWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLH 612


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 325/604 (53%), Gaps = 22/604 (3%)

Query: 18  SSLVSPFIT-KIIQDPTSSTSKLVLDNY-VDISRLLSISA-----KEGHFHLGPSLHASF 70
           +SLVS F+  K+  D   +   ++     V+++ L+S+       +EG F LG  +H   
Sbjct: 146 NSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLG--VHGLV 203

Query: 71  IKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF 130
           +KT           + +   + N+L+  Y K   +  ++K+F+ MP R+ VSWN+ +  F
Sbjct: 204 LKT----------GLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCF 253

Query: 131 LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE 190
           L  G +      F+   E GF      + + +L A        + + +H        E +
Sbjct: 254 LNAGLYGDVLALFRGMSERGFMP-GSITLSSLLPALVELGYFDLGREVHGYSIKRAMELD 312

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + V N+L+  Y K GS      VF ++ VRNV++W A+I+ LVQN    E   L +KM  
Sbjct: 313 IFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQK 372

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               PNS+T ++ + ACS + +L  G+QIH    +  L  DL I +AL+DMY+KCG +  
Sbjct: 373 DGECPNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRL 432

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  IF+ +E+ D VS   +++G++Q+ +  E++ LF ++   GIE D       L     
Sbjct: 433 AQSIFDLSEK-DDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTN 491

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            +S   GK+IH ++++   +++PF+ N L+ +Y+K G L+ + K+F+R+  ++  SWN+M
Sbjct: 492 LSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNM 551

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  +  HG    A  L++ MK  GV    V+++++L  CSH GLV +G ++   M     
Sbjct: 552 IMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHML-AQN 610

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           + P+  HYAC+VD++GR+G L E+   I  MP   +  VW ALLGAC IHG+ E+ +YAA
Sbjct: 611 LEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAA 670

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           + LF  +P+    Y ++ N+Y+ +GRW E  K    MK   V K    SW++   ++ +F
Sbjct: 671 DHLFELKPEHSGYYSVLRNMYAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQAF 730

Query: 611 VVDD 614
           +V D
Sbjct: 731 LVGD 734



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 150/475 (31%), Positives = 241/475 (50%), Gaps = 14/475 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++FY  C    +A ++FD+MP RD VSWN++VS FL N  FD         +  G  
Sbjct: 115 NTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGV- 173

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            ++ AS   ++ AC   +       +H LV   G +  V +GNAL+  Y K G   +  K
Sbjct: 174 PVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMK 233

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RN ++W + I   +   LY + L LF  M      P S+T  S + A   L  
Sbjct: 234 VFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGY 293

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              GR++HG   K A++ D+ + ++L+DMY+K GS+E A  +FE  E  + VS   ++  
Sbjct: 294 FDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIAN 353

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFT 390
             QNG E EA  L +KM K G E  PN ++ V  L       SL  GKQIH+  I++   
Sbjct: 354 LVQNGAESEAFGLVIKMQKDG-EC-PNSITLVNLLPACSRMASLKTGKQIHAWSIRTGLM 411

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F++N LI+MY+KCG L  +  +F  ++ ++ VS+N++I  +++    F++L L++++
Sbjct: 412 FDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQL 470

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAG 509
              G+E   ++F+  L AC+++    +G E    +  V R+       A  ++ +  + G
Sbjct: 471 SSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVL--VRRLLSNHPFLANTLLGLYTKGG 528

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           +L  A     R+  K DV  W  ++    +HG  +    AA  LF    D    Y
Sbjct: 529 MLDTASKIFNRIKEK-DVASWNNMIMGYGMHGQID----AAFHLFDLMKDHGVTY 578



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 155/324 (47%), Gaps = 12/324 (3%)

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC-- 274
           +R+R+   W ++   L    L  E L ++  M    ++P+  T+  ++ A +        
Sbjct: 34  LRLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPA 93

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G ++H    +    +D+   + L+  Y+ CG   DA ++F+     D VS   ++  F 
Sbjct: 94  KGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFL 153

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
            N   ++A Q  + M+++G+ ++   + +V+   GV+   G G  +H L++K+   S   
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVN 213

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           + N L++MY K G +E S+KVF  M  RN VSWNS I  F   G     L L+  M   G
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             P  +T  SLL A   +G  + G E     +K   E+      +     +VDM  + G 
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANS-----LVDMYAKFGS 328

Query: 511 LIEARSFIERMPVKPDVLVWQALL 534
           L +A +  E++ V+ +V+ W A++
Sbjct: 329 LEKACAVFEKIEVR-NVVSWNAMI 351


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 268/447 (59%), Gaps = 4/447 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N LI++Y + G   + R++F +MR R++++W A+IS   QN  Y +G  +F +M   +  
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN +T  + +  C+ L  L  G +I  +     L S++ + +A+++MY KCG+V+D   +
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDT 372
           F+     D V+ + ++ G+AQNG   EA++LF  M  A  +I PN V+  +VL       
Sbjct: 286 FDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSA--QIKPNDVTLVSVLSACAQLG 343

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           S+  G++I S +      SN +V + L+ MYSKCG++  + ++F ++  R++V+WNSMI 
Sbjct: 344 SVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIM 403

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
             A +G    A+ LY  MK   V+P ++TF+ L+ AC+H G V  G+EF +SM   H IS
Sbjct: 404 GLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNIS 463

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P  EH+AC+VD+  R+G LI+A  FI RM V+P+V++W  LL A  IH + E+ + A +K
Sbjct: 464 PNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKK 523

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           L   +PD+   Y++++NIY+ +GRW+E  K  K MK+  V K    SW+E+E +VH F+V
Sbjct: 524 LLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLV 583

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGY 639
            D  HP++D ++  +  L  L    GY
Sbjct: 584 GDTSHPRSDEVYSTIDGLALLSTWVGY 610



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/374 (31%), Positives = 201/374 (53%), Gaps = 24/374 (6%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T+ +N L+S Y +  ++  A +LFD M  R  VSWN M+S + +NG++  G+  F+R ++
Sbjct: 162 TIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQR-MQ 220

Query: 149 LGFYQLDQASFTIILSACDRS---ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
               + ++ +   +LS C +    E+ L  K ++    L      + V  A++  Y KCG
Sbjct: 221 DEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNL---GSNMIVSTAMLEMYVKCG 277

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           +   GR VF  M  R+V+TW+A+I+G  QN    E L+LF  M    I PN +T +S + 
Sbjct: 278 AVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLS 337

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           AC+ L ++  G +I   +    L S++ + SAL+ MYSKCG++  A QIF+   + D V+
Sbjct: 338 ACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVT 397

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHS 382
              +++G A NGF E+A+ L+ +M +  IE+ PN ++ V G+    T  G   LG +   
Sbjct: 398 WNSMIMGLAINGFAEDAIALYNRMKE--IEVKPNNITFV-GLMTACTHAGHVELGLEFFR 454

Query: 383 LIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSVSWNSMIAAFARHGN 439
             ++SD   +P + +   +++++ + G L D+ +   RM    N V W ++++A   H N
Sbjct: 455 -SMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLN 513

Query: 440 -------GFKALEL 446
                  G K LEL
Sbjct: 514 VELAELAGKKLLEL 527



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 174/366 (47%), Gaps = 33/366 (9%)

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R+VF ++   +     + I+   +  L  E L+ FV MH   +     T      +C+ 
Sbjct: 49  ARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCAS 108

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMY--------------------------- 302
           L A+  G+Q+H ++ +    S +  ++AL++ Y                           
Sbjct: 109 LLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCL 168

Query: 303 ----SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
               S+ G V  A ++F+   +   VS   ++  +AQNG   +   +F +M     E + 
Sbjct: 169 ISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNE 228

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
             ++ VL +      L +G +I  L    +  SN  V+  ++ MY KCG ++D   VF  
Sbjct: 229 ITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDH 288

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           MA R+ V+W++MIA +A++G   +ALEL+E MK   ++P DVT +S+L AC+ +G V  G
Sbjct: 289 MARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETG 348

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E + S  E   +       + ++ M  + G +I+AR   +++P + +V  W +++   +
Sbjct: 349 -ERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNV-TWNSMIMGLA 406

Query: 539 IHGDSE 544
           I+G +E
Sbjct: 407 INGFAE 412



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 138/278 (49%), Gaps = 24/278 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N + ++ +LSI AK G   +G       ++  +  DN+N+    +  ++  ++L  Y+KC
Sbjct: 227 NEITLATVLSICAKLGDLEMG-------LRIKKLNDNKNL---GSNMIVSTAMLEMYVKC 276

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             + +   +FD M  RD V+W+ M++G+ +NG  +     F+ +++    + +  +   +
Sbjct: 277 GAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFE-NMKSAQIKPNDVTLVSV 335

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LSAC +       + I   V   G    V V +AL+  Y KCG+    R++F ++  R+ 
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS-------GLQALCE 275
           +TW ++I GL  N   E+ + L+ +M    + PN++T++  + AC+       GL+    
Sbjct: 396 VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRS 455

Query: 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            R  H I     ++   CI    +D++ + G + DA++
Sbjct: 456 MRSDHNI--SPNIEHFACI----VDLFCRSGRLIDAYE 487



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 137/298 (45%), Gaps = 34/298 (11%)

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
           ++ A Q+F+     D       +  +++     EA++ FV M +  + I    +  +   
Sbjct: 46  IQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKS 105

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL------------EDSI-- 413
                ++ +GKQ+HSL+I+  F S+ F  N LIN Y+K  DL            +D+I  
Sbjct: 106 CASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAY 165

Query: 414 -----------------KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
                            ++F +M  R+ VSWN+MI+ +A++G+  K   +++ M+ E  E
Sbjct: 166 NCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCE 225

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           P ++T  ++L  C+ +G +  G+  +K + +   +         +++M  + G + + R 
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLR-IKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRL 284

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
             + M  + DV+ W A++   + +G S       E +  AQ   P    L++ + +C+
Sbjct: 285 VFDHMA-RRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQI-KPNDVTLVSVLSACA 340


>gi|356545955|ref|XP_003541398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Glycine max]
          Length = 667

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 201/616 (32%), Positives = 321/616 (52%), Gaps = 51/616 (8%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  I          + +V     + + L+ FY K +    A K+FD  P R+T +
Sbjct: 53  GKQLHARLI----------LLSVTPDNFLASKLILFYSKSNHAHFARKVFDTTPHRNTFT 102

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS---FTI--ILSACDRSELSL-VSK 176
           WN M+ G+  N  F      F       F     AS   FTI  +L A   S  S  ++K
Sbjct: 103 WNAMLLGYSFNSMFRHALNLFG---SFTFSTTPNASPDNFTISCVLKALASSFCSPELAK 159

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +HCL+   G   ++ V NALIT Y +C      R VF  M  R+++TW A+I G  Q +
Sbjct: 160 EVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWNAMIGGYSQRR 219

Query: 237 LYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
           LY+E  +L+++M ++  + PN +T +S + AC     L  G ++H  + +  ++ D+ + 
Sbjct: 220 LYDECKRLYLEMLNVSAVAPNVVTAVSVMQACGQSMDLAFGMELHRFVKESGIEIDVSLS 279

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           +A++ MY+KCG ++ A ++FE   E D V+   I+ G+   G  ++AM +F  +   G+ 
Sbjct: 280 NAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMGVFRGVENPGLN 339

Query: 356 -----------------------------IDPNMVS--AVLGVFGVDTSLGLGKQIHSLI 384
                                        + PN V+  ++L  F   ++L  GK++H   
Sbjct: 340 MWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSYFSNLRGGKEVHGYA 399

Query: 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
           I+  +  N +V+  +I+ Y K G +  +  VF     R+ + W S+I+A+A HG+   AL
Sbjct: 400 IRRGYEQNVYVSTSIIDAYGKLGCICGARWVFDLSQSRSLIIWTSIISAYAAHGDAGLAL 459

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            LY +M  +G+ P  VT  S+L AC+H GLV++      SM   + I P  EHYAC+V +
Sbjct: 460 GLYAQMLDKGIRPDPVTLTSVLTACAHSGLVDEAWNIFNSMPSKYGIQPLVEHYACMVGV 519

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + RAG L EA  FI  MP++P   VW  LL   S+ GD E+GK+A + LF  +P++   Y
Sbjct: 520 LSRAGKLSEAVQFISEMPIEPSAKVWGPLLHGASVFGDVEIGKFACDHLFEIEPENTGNY 579

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           I+MAN+Y+ +G+W++  +  +RMK +G+ K  G SWIE    + SF+  D  + ++D I+
Sbjct: 580 IIMANLYAHAGKWEQAGEVRERMKVIGLQKIRGSSWIETSGGLLSFIAKDVSNGRSDEIY 639

Query: 625 GVLAELLRLMIDEGYV 640
            +L  LL LM +EG V
Sbjct: 640 ALLEGLLGLMREEGCV 655



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 207/468 (44%), Gaps = 61/468 (13%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D A++   L  C    L    K +H  + L     +  + + LI  Y K   +   RKV
Sbjct: 32  VDFAAYGSALQHCSDHRLLRQGKQLHARLILLSVTPDNFLASKLILFYSKSNHAHFARKV 91

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI---NPNSLTYLSSVMACSGL 270
           F     RN  TW A++ G   N ++   L LF           +P++ T    + A +  
Sbjct: 92  FDTTPHRNTFTWNAMLLGYSFNSMFRHALNLFGSFTFSTTPNASPDNFTISCVLKALA-- 149

Query: 271 QALCE---GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
            + C     +++H ++ +  L SD+ + +AL+  Y +C  V  A  +F+   E D V+  
Sbjct: 150 SSFCSPELAKEVHCLILRRGLYSDIFVLNALITCYCRCDEVWLARHVFDGMSERDIVTWN 209

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA--VLGVFGVDTSLGLGKQIHSLII 385
            ++ G++Q    +E  +L+++M+     + PN+V+A  V+   G    L  G ++H  + 
Sbjct: 210 AMIGGYSQRRLYDECKRLYLEMLNVS-AVAPNVVTAVSVMQACGQSMDLAFGMELHRFVK 268

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG------N 439
           +S    +  ++N ++ MY+KCG L+ + ++F  M  ++ V++ ++I+ +  +G       
Sbjct: 269 ESGIEIDVSLSNAVVAMYAKCGRLDYAREMFEGMREKDEVTYGAIISGYMDYGLVDDAMG 328

Query: 440 GFKALE-------------------------LYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
            F+ +E                         L  +M+  G+ P  VT  S+L + S+   
Sbjct: 329 VFRGVENPGLNMWNAVISGMVQNKQFEGVFDLVRQMQGSGLSPNAVTLASILPSFSY--- 385

Query: 475 VNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                  L+   EVH  + R  +         ++D  G+ G +  AR ++  +     ++
Sbjct: 386 ----FSNLRGGKEVHGYAIRRGYEQNVYVSTSIIDAYGKLGCICGAR-WVFDLSQSRSLI 440

Query: 529 VWQALLGACSIHGDS--EMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           +W +++ A + HGD+   +G YA     L +   P P  L + + +C+
Sbjct: 441 IWTSIISAYAAHGDAGLALGLYAQ---MLDKGIRPDPVTLTSVLTACA 485


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/530 (34%), Positives = 286/530 (53%), Gaps = 16/530 (3%)

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           +T SWN  + GFL +         +KR L+    + D  ++ ++  AC R  L  +   I
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
              V   G++ ++ V NA+I     CG     RK+F +  VR++++W ++I+G V+    
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 161

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            E L  + +M +  I P+ +T +  V +C+ L+ L  GR+ H  + +  L+  + + +AL
Sbjct: 162 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 221

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV----------------GFAQNGFEEEA 342
           MDMY KCG++E A ++F+       VS T +L                 G+      +EA
Sbjct: 222 MDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEA 281

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M    I  D   + + L       +L +G  IH  I K + + N  +   LI+M
Sbjct: 282 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM 341

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG +  +I+VF  +  RNS++W ++I+  A HGN   A+  + EM    V P +VTF
Sbjct: 342 YAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTF 401

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           L LL AC H GLV +G ++   M+    +SP+ +HY+C+VD++GRAGLL EA   I+ MP
Sbjct: 402 LGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 461

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++ D +VW AL  AC IHG+  MG+ AA KL    P     Y+L+AN+Y  +  WKE  K
Sbjct: 462 IEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGK 521

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLR 632
             K M++ GV+K  G S IE+   V+ F+V DK HPQ++ I+  L +L R
Sbjct: 522 XRKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTR 571



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 188/369 (50%), Gaps = 27/369 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+++   + C  +  A K+FD   +RD VSWN+M++G++R G       F+ R +++   
Sbjct: 118 NAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFY-REMKVEGI 176

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D+ +   ++S+C + E   + +  HC +   G +  V + NAL+  Y KCG+  S RK
Sbjct: 177 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 236

Query: 213 ----------------VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
                           +F EM  ++V+ W A+I G V     +E L LF +M    INP+
Sbjct: 237 LFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPD 296

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
            +T +S + ACS L AL  G  IH  + K  L  ++ + +AL+DMY+KCG +  A Q+F+
Sbjct: 297 EVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQ 356

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
                + ++ T I+ G A +G    A+  F +M+   +   P+ V+  LG+       GL
Sbjct: 357 ELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM--PDEVT-FLGLLSACCHGGL 413

Query: 377 ---GKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSM 430
              G++  S  + S F  +P + +   ++++  + G LE++ ++   M    ++V W ++
Sbjct: 414 VEEGRKYFSQ-MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472

Query: 431 IAAFARHGN 439
             A   HGN
Sbjct: 473 FFACRIHGN 481



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 34/174 (19%)

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE-MKLEGVEPTDVTFLSLL 466
           DL+    +       N+ SWN  I  F    N  +A+ LY+  ++ +G +P + T+  L 
Sbjct: 27  DLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLF 86

Query: 467 HACSHVGLVNKGMEFLK-------------SMTEVHRI--------SPRAEHYACVVDMV 505
            AC+ + L+  G E L              S   +H +        + +    +CV D+V
Sbjct: 87  KACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLV 146

Query: 506 G---------RAGLLIEARSFIERMPV---KPDVLVWQALLGACSIHGDSEMGK 547
                     R G   EA +F   M V   KPD +    ++ +C+   D ++G+
Sbjct: 147 SWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGR 200


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/613 (32%), Positives = 320/613 (52%), Gaps = 34/613 (5%)

Query: 56  KEGHFHLGPSLHASFIKTFEPFDNQNV---YNVPNATVIWNS-------LLSFYLKCDQM 105
           +EGH  L P +  SF+K F   D   +    + P   + ++S       L++ Y  C  +
Sbjct: 139 REGH-ELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSV 197

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF----YQLDQA-SFT 160
            +A  +F+ +  +D V W  +VS ++ NG F+            GF    Y  D A   +
Sbjct: 198 DSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKAS 257

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
           I L A D       +K +H  +    Y  +  VG  L+  Y + G  S   KVF EM   
Sbjct: 258 IGLGAFD------FAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKN 311

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM------ACSGLQALC 274
           +V+ W+ +I+   QN    E + LF++M    + PN  T LSS++       CSGL    
Sbjct: 312 DVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFT-LSSILNGCAIGKCSGL---- 366

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
            G Q+HG++ K+    D+ + +AL+D+Y+KC  ++ A ++F      + VS   ++VG+ 
Sbjct: 367 -GEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYE 425

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394
             G   +A  +F + ++  + +     S+ LG      S+ LG Q+H L IK++      
Sbjct: 426 NLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVA 485

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           V+N LI+MY+KCGD++ +  VF+ M   +  SWN++I+ ++ HG G +AL + + MK   
Sbjct: 486 VSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRD 545

Query: 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514
            +P  +TFL +L  CS+ GL+++G E  +SM   H I P  EHY C+V ++GR+G L +A
Sbjct: 546 CKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKA 605

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
              IE +P +P V++W+A+L A     + E  + +AE++    P   A Y+L++N+Y+ +
Sbjct: 606 MKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGA 665

Query: 575 GRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            +W   A   K MKEMGV KE G+SWIE +  VH F V    HP    I+G+L  L    
Sbjct: 666 KQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKA 725

Query: 635 IDEGYVPNKRFIL 647
              GYVP++  +L
Sbjct: 726 TRAGYVPDRNAVL 738



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 246/477 (51%), Gaps = 22/477 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y+K    ++A+ LFD+MP R+ VS+ T+  G+       +     +   EL  +
Sbjct: 88  NILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPH 147

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                SF  +  + D++E   +   +H  +   GY+    VG ALI +Y  CGS  S R 
Sbjct: 148 VF--TSFLKLFVSLDKAE---ICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSART 202

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  ++++ W  ++S  V+N  +E+ LKL   M +    PN+ T+ +++ A  GL A
Sbjct: 203 VFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGA 262

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
               + +HG + K     D  +   L+ +Y++ G + DA+++F    + D V  + ++  
Sbjct: 263 FDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F QNGF  EA+ LF++M +A +  +   +S++L    +    GLG+Q+H L++K  F  +
Sbjct: 323 FCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLD 382

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V+N LI++Y+KC  ++ ++K+F+ ++ +N VSWN++I  +   G G KA  ++ E   
Sbjct: 383 IYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALR 442

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVG 506
             V  T+VTF S L AC+ +  ++ G+       +VH ++ +  +   V      +DM  
Sbjct: 443 NQVSVTEVTFSSALGACASLASMDLGV-------QVHGLAIKTNNAKKVAVSNSLIDMYA 495

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           + G +  A+S    M    DV  W AL+   S HG   +G+ A   L + +     P
Sbjct: 496 KCGDIKFAQSVFNEMET-IDVASWNALISGYSTHG---LGRQALRILDIMKDRDCKP 548



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 18/324 (5%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           LD  ++  +L  C +    + +K IHC +   G   ++   N L+ +Y K G       +
Sbjct: 47  LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQ 271
           F EM  RN +++      L Q    ++ + L+ ++H     +NP+  T    +       
Sbjct: 107 FDEMPERNNVSFVT----LAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +C    +H  + KL   S+  + +AL++ YS CGSV+ A  +FE     D V    I+ 
Sbjct: 163 EICP--WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVS 220

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-----KQIHSLIIK 386
            + +NG+ E++++L   M  AG   +       L       S+GLG     K +H  I+K
Sbjct: 221 CYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTAL-----KASIGLGAFDFAKGVHGQILK 275

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           + +  +P V  GL+ +Y++ GD+ D+ KVF+ M   + V W+ MIA F ++G   +A++L
Sbjct: 276 TCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDL 335

Query: 447 YEEMKLEGVEPTDVTFLSLLHACS 470
           +  M+   V P + T  S+L+ C+
Sbjct: 336 FIRMREAFVVPNEFTLSSILNGCA 359


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 304/553 (54%), Gaps = 6/553 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD M + D +SWN M++G   N E + G   F   LE  
Sbjct: 234 VLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE 293

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                    ++ +++   SE+    +M H      G+  +V   N+LI  Y   G     
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEM-HGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDA 352

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  ++ ++WTA+ISG  +N   ++ L+++  M L  ++P+ +T  S++ AC+ L
Sbjct: 353 GKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACL 412

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H +         + + +AL++MY+K   ++ A ++F+F  E D VS + ++
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            GF  N    EA+  F  M+     + PN V+  A L       +L  GK+IH+ +++  
Sbjct: 473 AGFCFNHRSFEALYYFRYMLG---HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCG 529

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S  +V N L+++Y KCG    +   FS  + ++ VSWN M++ F  HG G  AL L+ 
Sbjct: 530 IGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFN 589

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G  P +VTF++LL ACS  G+V +G E    MTE   I P  +HYAC+VD++ R 
Sbjct: 590 QMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRV 649

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA + I RMP+KPD  VW ALL  C IH   E+G+ AA+ +   +P+  A ++L+ 
Sbjct: 650 GKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLC 709

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +G+W + A+  K M+E G++++ G SW+E++   H+F+ DD+ HPQ   I+ VL 
Sbjct: 710 DLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLH 769

Query: 629 ELLRLMIDEGYVP 641
            +   M   G+ P
Sbjct: 770 GIYERMKACGFAP 782



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 235/477 (49%), Gaps = 19/477 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++LS  ++  ++ +A ++F  MP RD  SWN MV G+ + G  +     + R L  G  
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGM- 193

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L  C       + + +H  V   G+ +EV V NAL+T Y KCG   + RK
Sbjct: 194 RPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARK 253

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M V + I+W A+I+G  +N   E GL+LF+ M    + PN +T  S  +A   L  
Sbjct: 254 VFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSE 313

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   +++HG   K     D+   ++L+ MY+  G + DA +IF   E  D +S T ++ G
Sbjct: 314 VGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISG 373

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NGF ++A++++  M    +  D   +++ L        L +G ++H L     F   
Sbjct: 374 YEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRY 433

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L+ MY+K   ++ +I+VF  MA ++ VSW+SMIA F  +   F+AL  +  M L
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-L 492

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGL 510
             V+P  VTF++ L AC+  G +  G E       V R    +E Y    ++D+  + G 
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEI---HAYVLRCGIGSEGYVPNALLDLYVKCGQ 549

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDS-----------EMGKYAAEKLFLA 556
              A +       K DV+ W  +L     HG             EMG++  E  F+A
Sbjct: 550 TSYAWAQFSVHSEK-DVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVA 605



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 161/293 (54%), Gaps = 4/293 (1%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + +GNA+++   + G      +VF +M  R+V +W  ++ G  +    EE L L+ +M  
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLW 190

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
             + P+  T+   +  C G+     GR++H  + +     ++ + +AL+ MY+KCG +  
Sbjct: 191 AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVA 250

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVF 368
           A ++F+     D +S   ++ G  +N   E  ++LF+ M++   E+ PN+  +++V    
Sbjct: 251 ARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN--EVQPNLMTITSVTVAS 308

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G+ + +G  K++H   +K  F  +    N LI MY+  G + D+ K+FSRM  ++++SW 
Sbjct: 309 GMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWT 368

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +MI+ + ++G   KALE+Y  M+L  V P DVT  S L AC+ +G ++ G++ 
Sbjct: 369 AMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKL 421



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
            V+ N+LL  Y K   +  A+++F  M  +D VSW++M++GF  N        +F+    
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR--YM 491

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           LG  + +  +F   LSAC  +      K IH  V  CG   E  V NAL+  Y KCG +S
Sbjct: 492 LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTS 551

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
                F     ++V++W  ++SG V + L +  L LF +M     +P+ +T+++ + ACS
Sbjct: 552 YAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACS 611

Query: 269 GLQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
               + +G ++ H +  K ++  +L   + ++D+ S+ G + +A+ +
Sbjct: 612 RAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNL 658



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 11/296 (3%)

Query: 273 LCEGRQIHGILWKLALQSD-------LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           LCE R+      +   ++D       L + +A++ M  + G +  AW++F    E D  S
Sbjct: 105 LCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFS 164

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             V++ G+ + GF EEA+ L+ +M+ AG+  D      VL   G      +G+++H+ ++
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +  F     V N L+ MY+KCGD+  + KVF  MA  + +SWN+MIA    +      LE
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLE 284

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M    V+P  +T  S+  A   +  V    E +         +        ++ M 
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKE-MHGFAVKRGFAIDVAFCNSLIQMY 343

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
              G + +A     RM  K D + W A++     +G  D  +  YA  +L    PD
Sbjct: 344 TSLGRMGDAGKIFSRMETK-DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/593 (31%), Positives = 324/593 (54%), Gaps = 27/593 (4%)

Query: 31  DPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           DP   ++K VL      + LL    K   F+ G  +HA  IK+   FD            
Sbjct: 51  DPGEISAKPVL-----YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDR----------F 95

Query: 91  IWNSLLSFYLKC-DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + NSLL+ Y K         K+FD + ++D +SW +M+SG++R G+       F + L  
Sbjct: 96  VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA- 154

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             Y ++  +FT+  ++ AC       + ++ H +V   G++    + +ALI  + +  + 
Sbjct: 155 --YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCAL 212

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMA 266
              R++F E+   + I WT++IS L +N  ++E L+ F  M     + P+  T+ + + A
Sbjct: 213 DDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTA 272

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L  L +G+++H  +       ++ +ES+L+DMY KCGSV ++ +IF+     + VS 
Sbjct: 273 CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSW 332

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + +L G+ QNG  +  +Q+F KM K  +     ++    G+  V      GK++H   I+
Sbjct: 333 SALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQ----GKEVHCQYIR 388

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                +  V + L+++Y+KCG +E +  +F +M  RN ++WNSMI  FA++G G +AL +
Sbjct: 389 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 448

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M  EG++P  ++F+ +L ACSH GLV++G E+  SMT+ + I    EHY+C+VD++G
Sbjct: 449 FNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLG 508

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGLL EA   IE    + D  +W ALLGAC+   + E+ +  A+++   +PD    Y+L
Sbjct: 509 RAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVL 568

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV-HSFVVDDKMHP 618
           +AN+Y   GRW +  +  + MK+ GV+K  G SWIE +  +  SF  ++ + P
Sbjct: 569 LANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFDFENSLVP 621



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 3/196 (1%)

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+QL   +    I   P + +++L       +   G QIH+ +IKS    + FV N L+ 
Sbjct: 43  ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 102

Query: 402 MYSKCG-DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +Y K G D  ++ KVF  +  ++ +SW SMI+ + R G    +LEL+ +M   GVEP   
Sbjct: 103 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 162

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T  +++ ACS +G +  G  F   +             + ++DM GR   L +AR   + 
Sbjct: 163 TLSAVIKACSELGDLKLGRIF-HGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDE 221

Query: 521 MPVKPDVLVWQALLGA 536
           + ++PD + W +++ A
Sbjct: 222 L-LEPDAICWTSIISA 236


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 309/567 (54%), Gaps = 34/567 (5%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQASFTIILSAC 166
           A K+FD++P  ++ +WNT++  +    +  +  + F     E   Y        +I +A 
Sbjct: 83  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
           + S LSL  + +H +        +V V N+LI  YF CG   S  KVF  ++ ++V++W 
Sbjct: 143 EVSSLSL-GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN 201

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++I+G VQ    ++ L+LF KM    +  + +T +  + AC+ ++ L  GRQ+   + + 
Sbjct: 202 SMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEEN 261

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA------------ 334
            +  +L + +A++DMY+KCGS+EDA ++F+  EE D V+ T +L G+A            
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 321

Query: 335 -------------------QNGFEEEAMQLFVKM-VKAGIEIDPNMVSAVLGVFGVDTSL 374
                              QNG   EA+ +F ++ ++  ++++   + + L       +L
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LG+ IHS I K     N  V + LI+MYSKCGDLE S +VF+ +  R+   W++MI   
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           A HG G +A++++ +M+   V+P  VTF ++  ACSH GLV++       M   + I P 
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            +HYAC+VD++GR+G L +A  FIE MP+ P   VW ALLGAC IH +  + + A  +L 
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLL 561

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
             +P +   ++L++NIY+  G+W+  ++  K M+  G+ KE G S IEI+  +H F+  D
Sbjct: 562 ELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD 621

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVP 641
             HP ++ ++G L E++  +   GY P
Sbjct: 622 NAHPMSEKVYGKLHEVMEKLKSNGYEP 648



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 203/433 (46%), Gaps = 63/433 (14%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           L+  +A+     LG SLH   +K+           V +   + NSL+  Y  C  + +A 
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKS----------AVGSDVFVANSLIHCYFSCGDLDSAC 186

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           K+F  +  +D VSWN+M++GF++ G  D     FK+ +E    +    +   +LSAC + 
Sbjct: 187 KVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK-MESEDVKASHVTMVGVLSACAKI 245

Query: 170 ELSLVSKMIHCLVYLCGYEEE------VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223
                 + +      C Y EE      +T+ NA++  Y KCGS    +++F  M  ++ +
Sbjct: 246 RNLEFGRQV------CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNV 299

Query: 224 TWTAVISGLVQNQLYE-------------------------------EGLKLFVKMHLGL 252
           TWT ++ G   ++ YE                               E L +F ++ L  
Sbjct: 300 TWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359

Query: 253 -INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            +  N +T +S++ AC+ + AL  GR IH  + K  ++ +  + SAL+ MYSKCG +E +
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS 419

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F   E+ D    + ++ G A +G   EA+ +F KM +A ++  PN V+    VF   
Sbjct: 420 REVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK--PNGVT-FTNVFCAC 476

Query: 372 TSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVS 426
           +  GL  +  SL   ++S++   P   +   ++++  + G LE ++K    M  P ++  
Sbjct: 477 SHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSV 536

Query: 427 WNSMIAAFARHGN 439
           W +++ A   H N
Sbjct: 537 WGALLGACKIHAN 549



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINM--YSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
           SL   KQ H  +I++   S+P+  + L  M   S    LE + KVF  +   NS +WN++
Sbjct: 42  SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101

Query: 431 IAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKG 478
           I A+A   +   ++  + +M  E    P   TF  L+ A + V  ++ G
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 288/520 (55%), Gaps = 35/520 (6%)

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L AC R +   + K +HC +   G ++  ++ N LI  Y KCG       +F ++  R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           I+W ++++   Q  L    L +F  M    GL  P+   +   V AC+ L A+ +G+Q+H
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGL-QPDHYVFACLVKACAILGAMKQGKQVH 128

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
                  +  D  ++S+L+DMY+KCG  +    +F+     + +S T ++ G+AQ+G + 
Sbjct: 129 ATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKL 188

Query: 341 EAMQLFVKM-VK------------------------------AGIEI-DPNMVSAVLGVF 368
           +A+QLF KM VK                               GI+I DP ++S+++G  
Sbjct: 189 DAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGAS 248

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
                LGLGKQIH L+I   + S+ FV+N L++MY+KC D+  + K+F RM  R+ VSW 
Sbjct: 249 ANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWT 308

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           S+I   A+HG   +AL LY  M   G++P +VTF+ L++ACSHVGLV+KG  F  SM + 
Sbjct: 309 SIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKD 368

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           + I+P  +HY C++D++ R+G L EA + I+ MP KPD   W ALL AC+ H ++ +G  
Sbjct: 369 YGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIR 428

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVH 608
            A+ L   +P+ P+ YIL++NIY+ +  W+  +K  + M  M V KE G S I + K+  
Sbjct: 429 VADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQ 488

Query: 609 SFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            F+  +  HP  + I G+L EL   M   GY+P+   +LH
Sbjct: 489 VFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLH 528



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 233/485 (48%), Gaps = 67/485 (13%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           +G  LH   IKT           +     + N+L++ Y KC  +++A+ LF+ +P RD +
Sbjct: 21  IGKKLHCHIIKT----------GIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPI 70

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW ++++   +     +    F    +    Q D   F  ++ AC         K +H  
Sbjct: 71  SWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHAT 130

Query: 182 VYLCGYEEEVTVGNALITSYFKCG--------------------------SSSSGRKV-- 213
             +    ++  V ++L+  Y KCG                           + SGRK+  
Sbjct: 131 FIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDA 190

Query: 214 ---FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG- 269
              F +M V+N+++WTA+ISGLVQ+  + +   LF++M    I+      LSS++  S  
Sbjct: 191 IQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASAN 250

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G+QIH ++  L  +S L + +AL+DMY+KC  V  A +IF    + D VS T I
Sbjct: 251 LAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSI 310

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIK 386
           +VG AQ+G  EEA+ L+ +M+  G++  PN V+ V G+    + +GL   G+   + +IK
Sbjct: 311 IVGTAQHGLAEEALSLYNRMLSTGLK--PNEVTFV-GLIYACSHVGLVSKGRYFFNSMIK 367

Query: 387 SDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKA 443
            D+  NP + +   L+++ S+ G LE++  +   M  + +  +W ++++A   H N    
Sbjct: 368 -DYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIG 426

Query: 444 LELYEE-MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE-----H 497
           + + +  + L+  +P+    LS ++A +            +S+++V R+    E      
Sbjct: 427 IRVADHLLSLKPEDPSTYILLSNIYASA---------AMWESVSKVRRLMAAMEVKKEPG 477

Query: 498 YACVV 502
           Y+C+V
Sbjct: 478 YSCIV 482


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 312/568 (54%), Gaps = 9/568 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+  +L++ Y K  ++ +A ++F+ +  RD VSWN M++    NG  D  F  F+  L 
Sbjct: 275 TVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLL 334

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL--CGYEE-EVTVGNALITSYFKCG 205
           +G     + ++  IL+AC  +        +  L     CG E  +V +G A++  Y +C 
Sbjct: 335 VGELP-SRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCK 393

Query: 206 SS----SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
           S     SS   +  +    +++ W  V+S  V+N+ +EE   +F  M LG +  ++++ +
Sbjct: 394 SPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLM 453

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           +   AC    +L +G+ IH +L +  L     +++AL+ MY++ GS+EDA +IF+     
Sbjct: 454 TVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTR 513

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
           + +S T ++   +Q G   EA+++F  ++  G+  +    +AVL   G   S+   K + 
Sbjct: 514 NVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQ 573

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGF 441
           + + ++ F  N  V NGL+    KCG LE+    F  MA +N VSWN+ IAA A+HGNG 
Sbjct: 574 ACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVKNQVSWNTAIAANAQHGNGV 633

Query: 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501
           + +EL++ M+LEG++   VT + +L +CSH GLV +G  +  +M   +     AEHY+CV
Sbjct: 634 RGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVAQGYSYFLNMHVDYGFPAEAEHYSCV 693

Query: 502 VDMVGRAGLLIEARSFIERMPV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560
           +D++ RAG L  A  F++R+P     V  W  LL  C +HGD E G  A +++    P S
Sbjct: 694 IDLLSRAGWLEHAEEFVKRLPFGDQSVFPWITLLCGCKLHGDLERGGRATQRILGLNPGS 753

Query: 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620
             PY++M N+Y+ +G+W E A   K M E+G  KE G+SWIE++ ++H F V D  HP++
Sbjct: 754 TGPYLVMHNLYAGAGKWPEAAAVRKSMVELGPKKEPGLSWIEVKGRIHEFRVGDTSHPRS 813

Query: 621 DTIHGVLAELLRLMIDEGYVPNKRFILH 648
             IH  L  L   M   G+V + + +++
Sbjct: 814 SEIHRELERLNEEMKRAGFVCDIKAVVY 841



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 237/497 (47%), Gaps = 21/497 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++  ++++ Y KC  + +A  +FD + +RD   WN M+S  + + + D     F R + L
Sbjct: 175 IVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAHEQGDEALELF-RQMRL 233

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G    ++ +    L+AC  S     +  IH        + +  V  AL+  Y K G    
Sbjct: 234 GGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTALVNMYGKFGKVDD 293

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             ++F  ++ R+V++W A+++    N  +++  K F +M L    P+ +TY++ + AC  
Sbjct: 294 AEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNAC-- 351

Query: 270 LQALCEGRQIHGILWK-LALQSDLCIES-------ALMDMYSKCGSVEDAWQ---IFEFA 318
                     HG   K LA++    IES       A+M+MYS+C S + A+    + E  
Sbjct: 352 ---FLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQD 408

Query: 319 EELDGVSM-TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
            +   + M   +L  + +N   EEA  +F  M+  G+ ID   +  V    G   SL  G
Sbjct: 409 RDQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKG 468

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           K IHSL+ +S+ T    V N L+ MY++ G LED+ ++F  M  RN +SW +M+   ++ 
Sbjct: 469 KWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHSQL 528

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
           G   +AL ++  + LEGV P +VTF ++L+AC ++  +         ++E        E 
Sbjct: 529 GLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGFFG-NVEV 587

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
              ++  +G+ G L E  +F + M VK  V  W   + A + HG+   G    + + L  
Sbjct: 588 ANGLLCTLGKCGSLEEVANFFQVMAVKNQV-SWNTAIAANAQHGNGVRGVELFQTMQLEG 646

Query: 558 PDSPAPYILMANIYSCS 574
            D+     L+  + SCS
Sbjct: 647 IDT-GSVTLIGVLSSCS 662



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 217/451 (48%), Gaps = 18/451 (3%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           LL+ Y KC     A  +F  +  +  V+W +++    R+G     F  F R ++L     
Sbjct: 81  LLAMYCKCGSPEEARAVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLF-REMQLQGVMP 139

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGRKV 213
           +  ++  +L AC           I   V  CG  E +V V  A++ +Y KCG   S   V
Sbjct: 140 NDVTYVAVLGACGHP---WEVDTIRARVEACGSLELDVIVATAVMNAYGKCGDLDSAWGV 196

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  + VR+   W A+IS LV ++  +E L+LF +M LG + PN  T ++++ AC   +  
Sbjct: 197 FDGILVRDAAVWNAMISLLVAHEQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDF 256

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            E  +IH    +LA  +D  +++AL++MY K G V+DA +IFE  +E D VS   +L   
Sbjct: 257 SEALRIHAFARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTAN 316

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF---T 390
           A NGF ++A + F +M+  G         A+L    +   L  G  + +L ++      +
Sbjct: 317 ACNGFHDKAFKCFREMLLVGELPSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIES 376

Query: 391 SNPFVNNGLINMYSKCGD----LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
            +  +   ++NMYS+C         S+ +       + + WN++++ +  +    +A  +
Sbjct: 377 VDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEAFTI 436

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEVHRISPRAEHYACVVDM 504
           +  M L GV    V+ +++ +AC     + KG  +  L + +E+ R +P       +V M
Sbjct: 437 FRLMLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQN---ALVTM 493

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             R G L +AR   + M  + +V+ W A++G
Sbjct: 494 YARLGSLEDAREIFDAMTTR-NVISWTAMVG 523



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 177/352 (50%), Gaps = 20/352 (5%)

Query: 145 RSLELGFYQ---LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
           R+ EL ++     D ++F  ++  C R       + IH L+   G E    +G  L+  Y
Sbjct: 26  RTDELKYFDDGSADASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMY 85

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            KCGS    R VF  ++ ++V+ WT++I    ++   +E   LF +M L  + PN +TY+
Sbjct: 86  CKCGSPEEARAVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYV 145

Query: 262 SSVMACSGLQALCEGRQIHGILWKL----ALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           + + AC          ++  I  ++    +L+ D+ + +A+M+ Y KCG ++ AW +F+ 
Sbjct: 146 AVLGACG------HPWEVDTIRARVEACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDG 199

Query: 318 AEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
               D     +M  +LV   Q    +EA++LF +M   G+  +     A L         
Sbjct: 200 ILVRDAAVWNAMISLLVAHEQG---DEALELFRQMRLGGVTPNKGTCVAALNACCHSRDF 256

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
               +IH+   +    ++  V   L+NMY K G ++D+ ++F R+  R+ VSWN+M+ A 
Sbjct: 257 SEALRIHAFARELAGDADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTAN 316

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           A +G   KA + + EM L G  P+ +T++++L+AC     +  G +F+K++ 
Sbjct: 317 ACNGFHDKAFKCFREMLLVGELPSRITYVAILNACFLAAHLKHG-DFVKTLA 367



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 12/191 (6%)

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G++IH LI+++      F+   L+ MY KCG  E++  VF  +  ++ V+W S+I  
Sbjct: 56  LAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEARAVFQGIQDKSVVAWTSLIGV 115

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH---VGLVNKGMEFLKSMTEVHR 490
            AR G+  +A  L+ EM+L+GV P DVT++++L AC H   V  +   +E   S+ E+  
Sbjct: 116 NARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGHPWEVDTIRARVEACGSL-ELDV 174

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKY 548
           I   A     V++  G+ G L  A    + + V+ D  VW A++     H  GD  +  +
Sbjct: 175 IVATA-----VMNAYGKCGDLDSAWGVFDGILVR-DAAVWNAMISLLVAHEQGDEALELF 228

Query: 549 AAEKLFLAQPD 559
              +L    P+
Sbjct: 229 RQMRLGGVTPN 239


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/588 (30%), Positives = 306/588 (52%), Gaps = 11/588 (1%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           A+ G   +G  +HA  +K+    D           ++ N+L++ Y K   + +   LF  
Sbjct: 153 AELGDIGVGRQVHAQAMKSENGSD----------LIVQNALVTMYSKSGLVADGFLLFGR 202

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  +D +SW ++++GF + G        F+  +  G +  ++  F  + SAC        
Sbjct: 203 MREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEY 262

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            + IH L      +     G +L   Y +C    S ++VF  +   ++++W ++I+    
Sbjct: 263 GEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWNSIINACSV 322

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
             L  E + L  +M    + P+ +T    + AC G  A+  GR +H  L KL L  D+ +
Sbjct: 323 EGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSV 382

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            ++L+ MY++C     A  +F    + D V+   IL    Q+   E   +LF  + ++  
Sbjct: 383 CNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLP 442

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            +D   ++ VL          + KQ+H+   K    ++  ++NGLI+ Y+KCG L+D++K
Sbjct: 443 SLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVK 502

Query: 415 VFSRMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           +F  M   + V SW+S+I  +A+ G   KAL+L+  M+  GV P  VTF+ +L ACS VG
Sbjct: 503 LFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACSRVG 562

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           LV++G  +   M   H + P  EH +CV+D++ RAG L EA  F+++MP +PD+++W+ L
Sbjct: 563 LVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFEPDIVMWKTL 622

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           L     H D EMG+ AAE +    P   A Y+L+ NIYS SG W E A+  K M+  GV 
Sbjct: 623 LAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLKKAMRSSGVK 682

Query: 594 KETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K  G SW++++ ++  F+V+D+ HP+++ I+ +L  +   MI  GYVP
Sbjct: 683 KSPGKSWVKLKGELKVFIVEDRSHPESEEIYTMLELVGMEMIKAGYVP 730



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/360 (33%), Positives = 176/360 (48%), Gaps = 17/360 (4%)

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM 248
               + N LIT Y +C +  S R VF EM  +N ++W +VI+   QN+   + L LF  M
Sbjct: 74  RNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSM 133

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308
                 P+     S+V AC+ L  +  GRQ+H    K    SDL +++AL+ MYSK G V
Sbjct: 134 LRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLV 193

Query: 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLG 366
            D + +F    E D +S   I+ GFAQ G E EA+Q+F +MV  G+   PN     +V  
Sbjct: 194 ADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMH-HPNEFHFGSVFS 252

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             GV  SL  G+QIHSL +K     N +    L +MY++C  LE + +VF  +   + VS
Sbjct: 253 ACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVS 312

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC------SHVGLVNKGME 480
           WNS+I A +  G   +A+ L  EM+  G+ P  +T   LL AC       H  L++  + 
Sbjct: 313 WNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLV 372

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            L    +V   +     YA  +D      +  E R          DV+ W ++L AC  H
Sbjct: 373 KLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHETR--------DRDVVTWNSILTACVQH 424



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 223/481 (46%), Gaps = 24/481 (4%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG  +H   + + +P       N+   TV+ N L++ Y +C    +A  +FD+MP ++ V
Sbjct: 56  LGCLVHRHLLASPDP-------NLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPV 108

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW ++++   +N       G F   L  G    DQ +    + AC       V + +H  
Sbjct: 109 SWASVIAAHAQNRRSTDALGLFSSMLRSGTAP-DQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                   ++ V NAL+T Y K G  + G  +FG MR ++ I+W ++I+G  Q     E 
Sbjct: 168 AMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEA 227

Query: 242 LKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           L++F +M   G+ +PN   + S   AC  L +L  G QIH +  K  L  +     +L D
Sbjct: 228 LQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSD 287

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY++C  +E A ++F   +  D VS   I+   +  G   EAM L  +M  +G+  D   
Sbjct: 288 MYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGIT 347

Query: 361 VSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           V  +L    G D ++  G+ +HS ++K     +  V N L++MY++C D   ++ VF   
Sbjct: 348 VRGLLCACVGCD-AIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHET 406

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             R+ V+WNS++ A  +H +     +L+  ++        ++  ++L A + +G      
Sbjct: 407 RDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELG------ 460

Query: 480 EFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            + + + +VH  + +            ++D   + G L +A    E M    DV  W +L
Sbjct: 461 -YFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSL 519

Query: 534 L 534
           +
Sbjct: 520 I 520


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/544 (32%), Positives = 289/544 (53%), Gaps = 2/544 (0%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147
           + ++ N +L  Y +C  + +A KLFD+M   + VS  TM+S +   G  D   G F   L
Sbjct: 117 SVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGML 176

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             G         T++ S  +   L    + IH  V   G     ++   ++  Y KCG  
Sbjct: 177 ASGDKPPSSMYTTLLKSLVNPRALDF-GRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWL 235

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              ++VF +M V+  +  T ++ G  Q     + LKLFV +    +  +S  +   + AC
Sbjct: 236 VGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKAC 295

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L+ L  G+QIH  + KL L+S++ + + L+D Y KC S E A + F+   E + VS +
Sbjct: 296 ASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWS 355

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
            I+ G+ Q    EEA++ F  +      I +    +++     V     +G Q+H+  IK
Sbjct: 356 AIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIK 415

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                + +  + LI MYSKCG L+D+ +VF  M   + V+W + I+  A +GN  +AL L
Sbjct: 416 RSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRL 475

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           +E+M   G++P  VTF+++L ACSH GLV +G   L +M   + ++P  +HY C++D+  
Sbjct: 476 FEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYA 535

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           R+GLL EA  F++ MP +PD + W+  L  C  H + E+G+ A E+L    P+  A Y+L
Sbjct: 536 RSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVL 595

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
             N+Y+ +G+W+E A+ +K M E  + KE   SWI+ + ++H F+V DK HPQ   I+  
Sbjct: 596 PFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEK 655

Query: 627 LAEL 630
           L E 
Sbjct: 656 LKEF 659



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 212/481 (44%), Gaps = 44/481 (9%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           S+  +  AC         +++H  + +      V + N ++  Y +C S     K+F EM
Sbjct: 85  SYQCLFEACRELRSLSHGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEM 144

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              N ++ T +IS   +  + ++ + LF  M      P S  Y + + +    +AL  GR
Sbjct: 145 SELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGR 204

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QIH  + +  L S+  IE+ +++MY KCG +  A ++F+       V+ T ++VG+ Q G
Sbjct: 205 QIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAG 264

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
              +A++LFV +V  G+E D  + S VL        L LGKQIH+ + K    S   V  
Sbjct: 265 RARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGT 324

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            L++ Y KC   E + + F  +   N VSW+++I+ + +     +A++ ++ ++ +    
Sbjct: 325 PLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASI 384

Query: 458 TD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
            +  T+ S+  ACS +   N G +      +   I  +    A ++ M  + G L +A  
Sbjct: 385 LNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESA-LITMYSKCGCLDDANE 443

Query: 517 FIERMPVKPDVLVWQ-----------------------------------ALLGACSIHG 541
             E M   PD++ W                                    A+L ACS  G
Sbjct: 444 VFESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAG 502

Query: 542 DSEMGKYAAEKLFLAQPDSPA--PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
             E GK+  + +      +P    Y  M +IY+ SG   E   A+K MK M  + +  +S
Sbjct: 503 LVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDE---ALKFMKNMPFEPD-AMS 558

Query: 600 W 600
           W
Sbjct: 559 W 559



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 134/249 (53%)

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
           L +++   E  +   +M    ++ +S +Y     AC  L++L  GR +H  +        
Sbjct: 58  LSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRMGIENPS 117

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           + +++ ++ MY +C S+EDA ++F+   EL+ VS T ++  +A+ G  ++A+ LF  M+ 
Sbjct: 118 VLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLA 177

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
           +G +   +M + +L       +L  G+QIH+ +I++   SN  +  G++NMY KCG L  
Sbjct: 178 SGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVG 237

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           + +VF +MA +  V+   ++  + + G    AL+L+ ++  EGVE     F  +L AC+ 
Sbjct: 238 AKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACAS 297

Query: 472 VGLVNKGME 480
           +  +N G +
Sbjct: 298 LEELNLGKQ 306


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/451 (37%), Positives = 264/451 (58%), Gaps = 2/451 (0%)

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  +   G++ ++ V N+LI+ Y  CG    G +VF     ++V++WTA+I G V+N   
Sbjct: 126 HAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSS 185

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSDLCIESA 297
            E +  FV+M    +  N +T +S + A    + +  GR IHG   +   ++ D+ I S+
Sbjct: 186 LEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSS 245

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMY KCG  +DA ++F+     + V+ T ++ G+ Q    E+ M +F +M+K+ +  +
Sbjct: 246 LVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPN 305

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
              +S+VL       +L  G+++H  +IK+    N  V   LI+ Y+KCG LE++I VF 
Sbjct: 306 EKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFE 365

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
           R+  +N  +W +MI  FA HG    A++L+  M    V P +VTF+ +L AC+H GLV +
Sbjct: 366 RLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEE 425

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G     SM E   + P+A+HYAC+VD+ GR GLL EA++ IERMP++P   VW AL G+C
Sbjct: 426 GRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSC 485

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            IH D E+GKYAA ++   QP     Y L+AN+YS S  W + A+  K+MK+  V K  G
Sbjct: 486 LIHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPG 545

Query: 598 ISWIEIEKQVHSFVV-DDKMHPQADTIHGVL 627
            SWIE++ ++H F+  DDK   ++D ++  L
Sbjct: 546 CSWIEVKGKLHEFIAFDDKKPLESDDLYKTL 576



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 184/356 (51%), Gaps = 12/356 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+S Y  C       ++FD    +D VSW  M+ GF+RN        +F      G
Sbjct: 140 VRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSG 199

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE-EVTVGNALITSYFKCGSSSS 209
               ++ +   +L A  ++E     + IH      G    +V +G++L+  Y KCG    
Sbjct: 200 V-AANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDD 258

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            +KVF EM  RNV+TWTA+I+G VQ + +E+G+ +F +M    + PN  T  S + AC+ 
Sbjct: 259 AQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAH 318

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           + AL  GR++H  + K +++ +  + + L+D Y+KCG +E+A  +FE   E +  + T +
Sbjct: 319 VGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAM 378

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII--KS 387
           + GFA +G+   A+ LF  M+ +   + PN V+ ++ V       GL ++   L +  K 
Sbjct: 379 INGFAAHGYAIGAVDLFHTMLSS--HVSPNEVTFIV-VLSACAHGGLVEEGRRLFLSMKE 435

Query: 388 DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN 439
            F   P  ++   +++++ + G LE++  +  RM   P N+V W ++  +   H +
Sbjct: 436 RFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAV-WGALFGSCLIHKD 490



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 138/269 (51%), Gaps = 11/269 (4%)

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q H  + K    SDL + ++L+  YS CG  E   ++F+  E+ D VS T ++ GF +N 
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVN 396
              EAM  FV+M ++G+  +   V +VL        +  G+ IH   +++     + F+ 
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + L++MY KCG  +D+ KVF  M  RN V+W ++IA + +     K + ++EEM    V 
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVA 303

Query: 457 PTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           P + T  S+L AC+HVG +++G       +K+  E++           ++D   + G L 
Sbjct: 304 PNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVG-----TTLIDFYAKCGCLE 358

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
           EA    ER+  K +V  W A++   + HG
Sbjct: 359 EAILVFERLREK-NVYTWTAMINGFAAHG 386



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 132/278 (47%), Gaps = 11/278 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N + +  +L  + K      G S+H  +++            V     I +SL+  Y
Sbjct: 200 VAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEA---------GRVRCDVFIGSSLVDMY 250

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC    +A K+FD+MP R+ V+W  +++G+++   F+ G   F+  L+      ++ + 
Sbjct: 251 GKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAP-NEKTL 309

Query: 160 TIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           + +LSAC         + +HC V     E   TVG  LI  Y KCG       VF  +R 
Sbjct: 310 SSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLRE 369

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           +NV TWTA+I+G   +      + LF  M    ++PN +T++  + AC+    + EGR++
Sbjct: 370 KNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRL 429

Query: 280 H-GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
              +  +  L+      + ++D++ + G +E+A  + E
Sbjct: 430 FLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIE 467



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 2/196 (1%)

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q H+ I+K  F S+ FV N LI+ YS CG  E   +VF     ++ VSW +MI  F R+ 
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY 498
           +  +A+  + EMK  GV   ++T +S+L A      V  G        E  R+       
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 499 ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
           + +VDM G+ G   +A+   + MP + +V+ W AL+         E G +  E++ L   
Sbjct: 244 SSLVDMYGKCGCYDDAQKVFDEMPSR-NVVTWTALIAGYVQGRCFEKGMFVFEEM-LKSD 301

Query: 559 DSPAPYILMANIYSCS 574
            +P    L + + +C+
Sbjct: 302 VAPNEKTLSSVLSACA 317


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 304/553 (54%), Gaps = 6/553 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y KC  +  A K+FD M + D +SWN M++G   N E + G   F   LE  
Sbjct: 234 VLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENE 293

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                    ++ +++   SE+    +M H      G+  +V   N+LI  Y   G     
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEM-HGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDA 352

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            K+F  M  ++ ++WTA+ISG  +N   ++ L+++  M L  ++P+ +T  S++ AC+ L
Sbjct: 353 GKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACL 412

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G ++H +         + + +AL++MY+K   ++ A ++F+F  E D VS + ++
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            GF  N    EA+  F  M+     + PN V+  A L       +L  GK+IH+ +++  
Sbjct: 473 AGFCFNHRSFEALYYFRYMLG---HVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCG 529

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S  +V N L+++Y KCG    +   FS  + ++ VSWN M++ F  HG G  AL L+ 
Sbjct: 530 IGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFN 589

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M   G  P +VTF++LL ACS  G+V +G E    MTE   I P  +HYAC+VD++ R 
Sbjct: 590 QMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRV 649

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA + I RMP+KPD  VW ALL  C IH   E+G+ AA+ +   +P+  A ++L+ 
Sbjct: 650 GKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLC 709

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+ +G+W + A+  K M+E G++++ G SW+E++   H+F+ DD+ HPQ   I+ VL 
Sbjct: 710 DLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLH 769

Query: 629 ELLRLMIDEGYVP 641
            +   M   G+ P
Sbjct: 770 GIYERMKACGFAP 782



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 235/477 (49%), Gaps = 19/477 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N++LS  ++  ++ +A ++F  MP RD  SWN MV G+ + G  +     + R L  G  
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGM- 193

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D  +F  +L  C       + + +H  V   G+ +EV V NAL+T Y KCG   + RK
Sbjct: 194 RPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARK 253

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M V + I+W A+I+G  +N   E GL+LF+ M    + PN +T  S  +A   L  
Sbjct: 254 VFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSE 313

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +   +++HG   K     D+   ++L+ MY+  G + DA +IF   E  D +S T ++ G
Sbjct: 314 VGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISG 373

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + +NGF ++A++++  M    +  D   +++ L        L +G ++H L     F   
Sbjct: 374 YEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRY 433

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N L+ MY+K   ++ +I+VF  MA ++ VSW+SMIA F  +   F+AL  +  M L
Sbjct: 434 VVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-L 492

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGL 510
             V+P  VTF++ L AC+  G +  G E       V R    +E Y    ++D+  + G 
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEI---HAYVLRCGIGSEGYVPNALLDLYVKCGQ 549

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDS-----------EMGKYAAEKLFLA 556
              A +       K DV+ W  +L     HG             EMG++  E  F+A
Sbjct: 550 TSYAWAQFSVHSEK-DVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVA 605



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 160/291 (54%), Gaps = 4/291 (1%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +GNA+++   + G      +VF +M  R+V +W  ++ G  +    EE L L+ +M    
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           + P+  T+   +  C G+     GR++H  + +     ++ + +AL+ MY+KCG +  A 
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM--VSAVLGVFGV 370
           ++F+     D +S   ++ G  +N   E  ++LF+ M++   E+ PN+  +++V    G+
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN--EVQPNLMTITSVTVASGM 310

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            + +G  K++H   +K  F  +    N LI MY+  G + D+ K+FSRM  ++++SW +M
Sbjct: 311 LSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAM 370

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           I+ + ++G   KALE+Y  M+L  V P DVT  S L AC+ +G ++ G++ 
Sbjct: 371 ISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKL 421



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 134/296 (45%), Gaps = 11/296 (3%)

Query: 273 LCEGRQIHGILWKLALQSD-------LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           LCE R+      +   ++D       L + +A++ M  + G +  AW++F    E D  S
Sbjct: 105 LCEWRRAVDAGMRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFS 164

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             V++ G+ + GF EEA+ L+ +M+ AG+  D      VL   G      +G+++H+ ++
Sbjct: 165 WNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVL 224

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +  F     V N L+ MY+KCGD+  + KVF  MA  + +SWN+MIA    +      LE
Sbjct: 225 RFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLE 284

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           L+  M    V+P  +T  S+  A   +  V    E +         +        ++ M 
Sbjct: 285 LFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKE-MHGFAVKRGFAIDVAFCNSLIQMY 343

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
              G + +A     RM  K D + W A++     +G  D  +  YA  +L    PD
Sbjct: 344 TSLGRMGDAGKIFSRMETK-DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPD 398



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N+LL  Y K   +  A+++F  M  +D VSW++M++GF  N        +F+    L
Sbjct: 435 VVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR--YML 492

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + +  +F   LSAC  +      K IH  V  CG   E  V NAL+  Y KCG +S 
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSY 552

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F     ++V++W  ++SG V + L +  L LF +M     +P+ +T+++ + ACS 
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSR 612

Query: 270 LQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
              + +G ++ H +  K ++  +L   + ++D+ S+ G + +A+ +
Sbjct: 613 AGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNL 658


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/559 (33%), Positives = 297/559 (53%), Gaps = 1/559 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N +L F         + ++ D     +   +NTM+ G + N  F      +    +
Sbjct: 42  TYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRK 101

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G    D  +F  +L AC R   S +   +H LV   G E +  V  +LI  Y KCG   
Sbjct: 102 EGLSP-DSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFID 160

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           +  KVF ++  +N  +WTA ISG V      E + +F ++    + P+S + +  + AC 
Sbjct: 161 NAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACK 220

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               L  G  I   + +  +  ++ + +AL+D Y KCG++E A  +F+   E + VS + 
Sbjct: 221 RTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSS 280

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+A NG  +EA+ LF KM+  G++ D   +  VL       +L LG    +LI  ++
Sbjct: 281 MIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNE 340

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  N  +   LI+MY+KCG ++ + +VF  M  ++ V WN+ I+  A  G+   AL L+ 
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M+  G++P   TF+ LL AC+H GLV +G  +  SM  V  ++P  EHY C+VD++GRA
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRA 460

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA   I+ MP++ + +VW ALLG C +H D+++ +   +KL   +P     Y+L++
Sbjct: 461 GCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLS 520

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ S +W+E AK    M E GV K  G SWIE++  VH F+V D  HP ++ I+  L 
Sbjct: 521 NIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLG 580

Query: 629 ELLRLMIDEGYVPNKRFIL 647
           EL + +   GYVP    +L
Sbjct: 581 ELAKDLKAAGYVPTTDHVL 599



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 189/366 (51%), Gaps = 2/366 (0%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           K IH  +   G +E+  + N ++   F  G+++   ++  + +  N+  +  +I GLV N
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             ++E ++++  M    ++P+S T+   + AC+ +     G ++H ++ K   ++D  ++
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
            +L+++Y+KCG +++A+++F+   + +  S T  + G+   G   EA+ +F ++++ G+ 
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  VL        L  G+ I   I ++    N FV   L++ Y KCG++E +  V
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F  M  +N VSW+SMI  +A +G   +AL+L+ +M  EG++P     + +L +C+ +G +
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             G ++  ++   +     +     ++DM  + G +  A      M  K D +VW A + 
Sbjct: 327 ELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAIS 384

Query: 536 ACSIHG 541
             ++ G
Sbjct: 385 GLAMSG 390


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/593 (31%), Positives = 324/593 (54%), Gaps = 27/593 (4%)

Query: 31  DPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90
           DP   ++K VL      + LL    K   F+ G  +HA  IK+   FD            
Sbjct: 110 DPGEISAKPVL-----YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDR----------F 154

Query: 91  IWNSLLSFYLKC-DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + NSLL+ Y K         K+FD + ++D +SW +M+SG++R G+       F + L  
Sbjct: 155 VGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA- 213

Query: 150 GFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
             Y ++  +FT+  ++ AC       + ++ H +V   G++    + +ALI  + +  + 
Sbjct: 214 --YGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCAL 271

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMA 266
              R++F E+   + I WT++IS L +N  ++E L+ F  M     + P+  T+ + + A
Sbjct: 272 DDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTA 331

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C  L  L +G+++H  +       ++ +ES+L+DMY KCGSV ++ +IF+     + VS 
Sbjct: 332 CGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSW 391

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           + +L G+ QNG  +  +Q+F KM K  +     ++    G+  V      GK++H   I+
Sbjct: 392 SALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQ----GKEVHCQYIR 447

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                +  V + L+++Y+KCG +E +  +F +M  RN ++WNSMI  FA++G G +AL +
Sbjct: 448 KGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRI 507

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + +M  EG++P  ++F+ +L ACSH GLV++G E+  SMT+ + I    EHY+C+VD++G
Sbjct: 508 FNQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLG 567

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAGLL EA   IE    + D  +W ALLGAC+   + E+ +  A+++   +PD    Y+L
Sbjct: 568 RAGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVL 627

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV-HSFVVDDKMHP 618
           +AN+Y   GRW +  +  + MK+ GV+K  G SWIE +  +  SF  ++ + P
Sbjct: 628 LANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKNNLGSSFDFENSLVP 680



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 3/196 (1%)

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+QL   +    I   P + +++L       +   G QIH+ +IKS    + FV N L+ 
Sbjct: 102 ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 161

Query: 402 MYSKCG-DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           +Y K G D  ++ KVF  +  ++ +SW SMI+ + R G    +LEL+ +M   GVEP   
Sbjct: 162 LYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAF 221

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           T  +++ ACS +G +  G  F   +             + ++DM GR   L +AR   + 
Sbjct: 222 TLSAVIKACSELGDLKLGRIF-HGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDE 280

Query: 521 MPVKPDVLVWQALLGA 536
           + ++PD + W +++ A
Sbjct: 281 L-LEPDAICWTSIISA 295


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 316/562 (56%), Gaps = 10/562 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   + +S +  Y +   +  A K+FD+   R+T  WNTM+S F++N     G   F ++
Sbjct: 245 NDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQA 304

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           +E     +D+ +    +SA    +   +++ +H  V       +V V NALI  Y +C S
Sbjct: 305 VESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNS 364

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
             +  K+F  M  ++V++W  +IS  VQN L +E L LF +M    +  +S+T  + + A
Sbjct: 365 IDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSA 424

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE--FAEELDGV 324
            S L+    G+Q HG L +  +Q +  ++S L+DMY+K G +E A  +FE  F+ E D  
Sbjct: 425 ASDLRNPDIGKQTHGYLLRNGIQFE-GMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQA 483

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHS 382
           +   ++ G+ QNG  ++A  +  +M+    ++ PN+V+  ++L        +  GKQ+H 
Sbjct: 484 TWNSMMSGYTQNGLVDQAFLILRQMLDQ--KVMPNVVTLASILPACNPSGYIDWGKQLHG 541

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
             I++D   N FV   LI+MYSK G +  +  VFS+   ++ V++++MI  + +HG G  
Sbjct: 542 FSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGES 601

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL ++  M+  G++P  VT +++L ACS+ GLV++G++  +SM  V+ I P  EH+ CV 
Sbjct: 602 ALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVA 661

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVL-VWQALLGACSIHGDSEMGKYAAEKLF-LAQPDS 560
           DM+GRAG + +A  F+  +  K +V+ +W +LL AC IH   E+GK  A+KL  + + + 
Sbjct: 662 DMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKING 721

Query: 561 PAPY-ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
              Y +L++NIY+    W+      K+M+E G+ KETG SWIEI   ++ F   D+ HPQ
Sbjct: 722 KTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEIAGYMNHFASKDRKHPQ 781

Query: 620 ADTIHGVLAELLRLMIDEGYVP 641
           +D I+ +L ELL  M   GY P
Sbjct: 782 SDQIYSMLEELLMEMKHAGYRP 803



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 228/468 (48%), Gaps = 44/468 (9%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL--DQASFTI 161
           Q+  A +LFD +P   TV WNT++ G + N   D    F+  +++    Q+  D  +++ 
Sbjct: 43  QLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYS-NMKSSSPQVKCDSYTYSS 101

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS------SG----- 210
           +L AC  +   +V K +H     C       V N+L+  Y  C S++      SG     
Sbjct: 102 VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 161

Query: 211 --RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             RKVF  MR R V+ W  +I+  V+ + Y E +K F  M    I P+ +++++   A S
Sbjct: 162 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 221

Query: 269 GLQALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            L        +HG+L KL  +  +DL + S+ + MY++ G +E A ++F+   E +    
Sbjct: 222 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 281

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             ++  F QN F  E +QLF + V++    ID   + + +          L +Q+H+ +I
Sbjct: 282 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 341

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+   +   V N LI MYS+C  ++ S K+F  M  ++ VSWN+MI+AF ++G   +AL 
Sbjct: 342 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 401

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRISPR 494
           L+ EMK + +    VT  +LL A S           H  L+  G++F + M         
Sbjct: 402 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQF-EGMD-------- 452

Query: 495 AEHYACVVDMVGRAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHG 541
               + ++DM  ++GL+  A++  E+    + D   W +++   + +G
Sbjct: 453 ----SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG 496



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 249/552 (45%), Gaps = 66/552 (11%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S++V ++ +++  + S +  +G    G S      K F+    + V       V WN+L+
Sbjct: 130 SRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTV-------VAWNTLI 182

Query: 97  SFYLKCDQMRNAVKLFDDMPMR-----DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           ++Y++ ++   AVK F  M M+       VS+  +   F   G+F               
Sbjct: 183 AWYVRTERYAEAVKQF-SMMMKIGIKPSPVSFVNVFPAFSSLGDFKN------------- 228

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYFKCGSSSS 209
                                  + ++H ++   G  Y  ++ V ++ I  Y + G    
Sbjct: 229 -----------------------ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF 265

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF---VKMHLGLINPNSLTYLSSVMA 266
            +KVF     RN   W  +IS  VQN    EG++LF   V+     I  + +T LS++ A
Sbjct: 266 AKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAI--DEVTLLSAISA 323

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S LQ      Q+H  + K    + +C+ +AL+ MYS+C S++ +++IF+   E D VS 
Sbjct: 324 ASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSW 383

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++  F QNG  +EA+ LF +M K  + +D   V+A+L       +  +GKQ H  +++
Sbjct: 384 NTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLR 443

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKAL 444
           +       +++ LI+MY+K G +E +  VF +     R+  +WNSM++ + ++G   +A 
Sbjct: 444 NGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAF 502

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            +  +M  + V P  VT  S+L AC+  G ++ G + L   +  + +         ++DM
Sbjct: 503 LILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQ-LHGFSIRNDLDQNVFVATALIDM 561

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPA 562
             ++G +  A +   +   K  V     +LG    +G   MG+ A       Q     P 
Sbjct: 562 YSKSGSIAHAENVFSKANEKSIVTYSTMILG----YGQHGMGESALFMFHRMQKSGIQPD 617

Query: 563 PYILMANIYSCS 574
              L+A + +CS
Sbjct: 618 AVTLVAVLSACS 629


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 304/556 (54%), Gaps = 5/556 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   +  A K+F DMP++D  SWN M+SGF +NG      G   R    G  +
Sbjct: 161 SLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV-K 219

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   IL  C +S+  +   +IH  V   G + +V V NALI  Y K G     + V
Sbjct: 220 MDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMV 279

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F +M VR++++W ++I+   QN      L+ F  M LG I P+ LT +S     S L   
Sbjct: 280 FDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQ 339

Query: 274 CEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              R I G ++ +  L  D+ I +AL++MY+K G +  A  +F+     D +S   ++ G
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTG 399

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + QNG   EA+  +  M++   +  PN  +  +++  +    +L  G +IH+ +IK+   
Sbjct: 400 YTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   LI++Y KCG LED++ +F  +    SV WN++IA+   HG G +AL+L+++M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V+   +TF+SLL ACSH GLV++G +    M + + I P  +HY C+VD++GRAG 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   +  MP++PD  +W ALL AC I+G++E+G  A+++L     ++   Y+L++NI
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ + +W+   K     ++ G+ K  G S + +  +   F   ++ HP+   I+  L  L
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 631 LRLMIDEGYVPNKRFI 646
              M   GYVP+  F+
Sbjct: 699 SAKMKSLGYVPDYSFV 714



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 235/469 (50%), Gaps = 12/469 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+      V+   L++ Y+    +  +   FD +  ++  SWN+++S ++R G++     
Sbjct: 47  VFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMN 106

Query: 142 FFKRSLEL---GFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNAL 197
              +   +   G  + D  +F  IL AC    +SLV  K +HC V+  G+E++V V  +L
Sbjct: 107 CVNQLFSMCGGGHLRPDFYTFPPILKAC----VSLVDGKKVHCCVFKMGFEDDVFVAASL 162

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           +  Y + G      KVF +M V++V +W A+ISG  QN      L +  +M    +  ++
Sbjct: 163 VHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDT 222

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           +T  S +  C+    +  G  IH  + K  L SD+ + +AL++MYSK G ++DA  +F+ 
Sbjct: 223 ITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ 282

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
            E  D VS   I+  + QN     A++ F  M   GI  D   V ++  +F   +   + 
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342

Query: 378 KQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           + I   +I+ ++     V  N L+NMY+K G +  +  VF ++  ++++SWN+++  + +
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 437 HGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           +G   +A++ Y  M +     P   T++S++ A SHVG + +GM+    + + + +    
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDV 461

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               C++D+ G+ G L +A S    +P    V  W A++ +  IHG  E
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTSV-PWNAIIASLGIHGRGE 509



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 193/389 (49%), Gaps = 11/389 (2%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           A F  + ++C        +K +H L+ + G  + + +   LI  Y   G  S  R  F  
Sbjct: 23  ADFNALFNSCVNVN---ATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGL----KLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +  +N+ +W ++IS  V+   Y E +    +LF     G + P+  T+   + AC    +
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---S 136

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+++H  ++K+  + D+ + ++L+ +YS+ G ++ A ++F      D  S   ++ G
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F QNG    A+ +  +M   G+++D   V+++L V      +  G  IH  ++K    S+
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV+N LINMYSK G L+D+  VF +M  R+ VSWNS+IAA+ ++ +   AL  ++ M+L
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+ P  +T +SL    S +         L  +     +         +V+M  + G + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            A +  +++P K D + W  L+   + +G
Sbjct: 377 CAHTVFDQLPRK-DTISWNTLVTGYTQNG 404



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 179/355 (50%), Gaps = 7/355 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y K  ++++A  +FD M +RD VSWN++++ + +N +      FFK  ++LG
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK-GMQLG 317

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSS 209
             + D  +   + S   +     +S+ I   V    + +++V +GNAL+  Y K G  + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN-PNSLTYLSSVMACS 268
              VF ++  ++ I+W  +++G  QN L  E +  +  M       PN  T++S + A S
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            + AL +G +IH  L K +L  D+ + + L+D+Y KCG +EDA  +F        V    
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+     +G  EEA+QLF  M+   ++ D     ++L        +  G++    I++ +
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKE 556

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
           +   P + +   ++++  + G LE + ++   M  +   S W ++++A   +GN 
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNA 611



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           VI N+L++ Y K   M  A  +FD +P +DT+SWNT+V+G+ +NG        +    E 
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 150 GFYQLDQASFTIILSACD-----RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                +Q ++  I+ A       +  + + +K+I   +YL     +V V   LI  Y KC
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL-----DVFVATCLIDLYGKC 474

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G       +F E+     + W A+I+ L  +   EE L+LF  M    +  + +T++S +
Sbjct: 475 GRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 265 MACSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQI 314
            ACS    + EG++   I+ K   ++  L     ++D+  + G +E A+++
Sbjct: 535 SACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL 585


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 196/632 (31%), Positives = 319/632 (50%), Gaps = 57/632 (9%)

Query: 16  FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE 75
           F  S  +  ++  +QDP    ++L     V  +R L     +       +L A++     
Sbjct: 22  FYDSAAAVDVSNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGM 81

Query: 76  PFDNQNVYNVPNA---TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
             D + +++ P+A    V W +LLS Y +  ++  A  LF  MP R+ VSWNTM+  +  
Sbjct: 82  LHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTS 141

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEV 191
           +G        F      G    D  S+ I+L+A  RS  +    K+   +      E  V
Sbjct: 142 SGRVGDACTLFN-----GMPVRDAGSWNILLAALVRSGNIDKARKLFDRMP-----ERNV 191

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
                ++    + GS +  R +F  M  RNV++W A+ISG  +N + +E   LF+KM   
Sbjct: 192 MAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMP-- 249

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
                                                  D+   + ++  + +  ++E A
Sbjct: 250 -------------------------------------TRDIASWNIMITGFIQNKNLERA 272

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     + V+ T ++ G+ Q+   E A+QLF  M+  GI   PN V+ +  V    
Sbjct: 273 QELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIR--PNQVTFLGAVDACS 330

Query: 372 TSLGL--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
              GL  G+Q+H +I K+ F  + F+ + L+N+Y+KCG++  + KVF+    ++ +SWN 
Sbjct: 331 NLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNG 390

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MIAA+A HG G +A+ LYE+M+  G +P DVT++ LL ACSH GLV++G+   + M +  
Sbjct: 391 MIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDR 450

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
            I+ R EHY C++D+  RAG L +A+  I  + V+P   VW ALLG C+ HG+  +G  A
Sbjct: 451 SIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLA 510

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           A  L  A+P++   Y L+ NIY+ +G+WKE AK    M + G+ K+ G SWIE+  +VH 
Sbjct: 511 ARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVHV 570

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           FV  DK H ++D I+ +L ++  +M     VP
Sbjct: 571 FVSRDKSHSESDLINSLLQDIHDIMRMADTVP 602


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 304/556 (54%), Gaps = 5/556 (0%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   +  A K+F DMP++D  SWN M+SGF +NG      G   R    G  +
Sbjct: 161 SLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV-K 219

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   IL  C +S+  +   +IH  V   G + +V V NALI  Y K G     + V
Sbjct: 220 MDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMV 279

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F +M VR++++W ++I+   QN      L+ F  M LG I P+ LT +S     S L   
Sbjct: 280 FDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQ 339

Query: 274 CEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              R I G ++ +  L  D+ I +AL++MY+K G +  A  +F+     D +S   ++ G
Sbjct: 340 RISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTG 399

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           + QNG   EA+  +  M++   +  PN  +  +++  +    +L  G +IH+ +IK+   
Sbjct: 400 YTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLY 458

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + FV   LI++Y KCG LED++ +F  +    SV WN++IA+   HG G +AL+L+++M
Sbjct: 459 LDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDM 518

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V+   +TF+SLL ACSH GLV++G +    M + + I P  +HY C+VD++GRAG 
Sbjct: 519 LAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGY 578

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   +  MP++PD  +W ALL AC I+G++E+G  A+++L     ++   Y+L++NI
Sbjct: 579 LEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNI 638

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ + +W+   K     ++ G+ K  G S + +  +   F   ++ HP+   I+  L  L
Sbjct: 639 YANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVL 698

Query: 631 LRLMIDEGYVPNKRFI 646
              M   GYVP+  F+
Sbjct: 699 SAKMKSLGYVPDYSFV 714



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 235/469 (50%), Gaps = 12/469 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
           V+      V+   L++ Y+    +  +   FD +  ++  SWN+++S ++R G++     
Sbjct: 47  VFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMN 106

Query: 142 FFKRSLEL---GFYQLDQASFTIILSACDRSELSLVS-KMIHCLVYLCGYEEEVTVGNAL 197
              +   +   G  + D  +F  IL AC    +SLV  K +HC V+  G+E++V V  +L
Sbjct: 107 CVNQLFSMCGGGHLRPDFYTFPPILKAC----VSLVDGKKVHCCVFKMGFEDDVFVAASL 162

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           +  Y + G      KVF +M V++V +W A+ISG  QN      L +  +M    +  ++
Sbjct: 163 VHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDT 222

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           +T  S +  C+    +  G  IH  + K  L SD+ + +AL++MYSK G ++DA  +F+ 
Sbjct: 223 ITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQ 282

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377
            E  D VS   I+  + QN     A++ F  M   GI  D   V ++  +F   +   + 
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRIS 342

Query: 378 KQIHSLIIKSDFTSNPFV-NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           + I   +I+ ++     V  N L+NMY+K G +  +  VF ++  ++++SWN+++  + +
Sbjct: 343 RSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQ 402

Query: 437 HGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           +G   +A++ Y  M +     P   T++S++ A SHVG + +GM+    + + + +    
Sbjct: 403 NGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK-NSLYLDV 461

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
               C++D+ G+ G L +A S    +P    V  W A++ +  IHG  E
Sbjct: 462 FVATCLIDLYGKCGRLEDAMSLFYEIPRDTSV-PWNAIIASLGIHGRGE 509



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 193/389 (49%), Gaps = 11/389 (2%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           A F  + ++C        +K +H L+ + G  + + +   LI  Y   G  S  R  F  
Sbjct: 23  ADFNALFNSCVNVN---ATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGL----KLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +  +N+ +W ++IS  V+   Y E +    +LF     G + P+  T+   + AC    +
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACV---S 136

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L +G+++H  ++K+  + D+ + ++L+ +YS+ G ++ A ++F      D  S   ++ G
Sbjct: 137 LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISG 196

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F QNG    A+ +  +M   G+++D   V+++L V      +  G  IH  ++K    S+
Sbjct: 197 FCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSD 256

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV+N LINMYSK G L+D+  VF +M  R+ VSWNS+IAA+ ++ +   AL  ++ M+L
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQL 316

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
            G+ P  +T +SL    S +         L  +     +         +V+M  + G + 
Sbjct: 317 GGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMN 376

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            A +  +++P K D + W  L+   + +G
Sbjct: 377 CAHTVFDQLPRK-DTISWNTLVTGYTQNG 404



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 179/355 (50%), Gaps = 7/355 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + N+L++ Y K  ++++A  +FD M +RD VSWN++++ + +N +      FFK  ++LG
Sbjct: 259 VSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK-GMQLG 317

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGY-EEEVTVGNALITSYFKCGSSSS 209
             + D  +   + S   +     +S+ I   V    + +++V +GNAL+  Y K G  + 
Sbjct: 318 GIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNC 377

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN-PNSLTYLSSVMACS 268
              VF ++  ++ I+W  +++G  QN L  E +  +  M       PN  T++S + A S
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            + AL +G +IH  L K +L  D+ + + L+D+Y KCG +EDA  +F        V    
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           I+     +G  EEA+QLF  M+   ++ D     ++L        +  G++    I++ +
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFD-IMQKE 556

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNG 440
           +   P + +   ++++  + G LE + ++   M  +   S W ++++A   +GN 
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNA 611



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           VI N+L++ Y K   M  A  +FD +P +DT+SWNT+V+G+ +NG        +    E 
Sbjct: 360 VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEEC 419

Query: 150 GFYQLDQASFTIILSACD-----RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
                +Q ++  I+ A       +  + + +K+I   +YL     +V V   LI  Y KC
Sbjct: 420 RDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL-----DVFVATCLIDLYGKC 474

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G       +F E+     + W A+I+ L  +   EE L+LF  M    +  + +T++S +
Sbjct: 475 GRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 265 MACSGLQALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQI 314
            ACS    + EG++   I+ K   ++  L     ++D+  + G +E A+++
Sbjct: 535 SACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL 585


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 193/608 (31%), Positives = 321/608 (52%), Gaps = 24/608 (3%)

Query: 56  KEGHFHLGPSLHASFIKTFEPFDNQNV---YNVPNATVIWNS-------LLSFYLKCDQM 105
           +EGH  L P +  SF+K F   D   +    + P   + ++S       L++ Y  C  +
Sbjct: 139 REGH-ELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSV 197

Query: 106 RNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
            +A  +F+ +  +D V W  +VS ++ NG F+       R    GF   +  +F   L A
Sbjct: 198 DSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMP-NNYTFDTALKA 256

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
                    +K +H  +    YE +  VG  L+  Y + G  S   KVF EM   +V+ W
Sbjct: 257 SIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM------ACSGLQALCEGRQI 279
           + +I+   QN    + + +F++M  G + PN  T LSS++       CSGL     G Q+
Sbjct: 317 SFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFT-LSSILNGCAIGKCSGL-----GEQL 370

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HG++ K+    D+ + +AL+D+Y+KC  ++ A ++F      + VS   ++VG+   G  
Sbjct: 371 HGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEG 430

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            +A+ +F + ++  + +     S+ LG      S+ LG Q+H L IK++      V+N L
Sbjct: 431 GKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSL 490

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           I+MY+KCGD++ +  VF+ M   +  SWN++I+ ++ HG G +AL +++ MK    +P  
Sbjct: 491 IDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNG 550

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +TFL +L  CS+ GL+++G +  +SM   H I P  EHY C+V + GR+G L +A + IE
Sbjct: 551 LTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIE 610

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            +P +P V++W+A+L A     + E  + +AE++    P   A Y+L++N+Y+ + +W  
Sbjct: 611 GIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWAN 670

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
            A   K MKE GV KE G+SWIE +  VH F V    HP    I+G+L  L       GY
Sbjct: 671 VASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGY 730

Query: 640 VPNKRFIL 647
           VP++  +L
Sbjct: 731 VPDRNAVL 738



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/449 (28%), Positives = 237/449 (52%), Gaps = 7/449 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y+K    ++A+ LFD+MP R+ VS+ T+  G+       +     +   EL  +
Sbjct: 88  NILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQDPVGLYSRLHREGHELNPH 147

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
                SF  +  + D++E+      +H  +   GY+    VG ALI +Y  CGS  S R 
Sbjct: 148 VF--TSFLKLFVSLDKAEICW---WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARS 202

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  +  ++++ W  ++S  V+N  +E+ L+L  +M +    PN+ T+ +++ A  GL A
Sbjct: 203 VFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGA 262

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
               + +HG + K   + D  +   L+ +Y++ G + DA+++F    + D V  + ++  
Sbjct: 263 FHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F QNGF  +A+ +F++M +  +  +   +S++L    +    GLG+Q+H L++K  F  +
Sbjct: 323 FCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLD 382

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            +V+N LI++Y+KC  ++ ++K+F+ ++ +N VSWN++I  +   G G KAL ++ E   
Sbjct: 383 VYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALR 442

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
             V  T+VTF S L AC+ +  +  G++      + +  + R      ++DM  + G + 
Sbjct: 443 NQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNN-AKRVAVSNSLIDMYAKCGDIK 501

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHG 541
            A++    M    DV  W AL+   S HG
Sbjct: 502 VAQTVFNEMET-IDVASWNALISGYSTHG 529



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 220/464 (47%), Gaps = 29/464 (6%)

Query: 18  SSLVSPFITK-IIQDPTSSTSKLVLDNYV----DISRLLSISAKEGHFHLGPSLHASFIK 72
           + +VS ++     +D     S++ +D ++         L  S   G FH   S+H   +K
Sbjct: 216 AGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILK 275

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
           T    D       P   V    LL  Y +   M +A K+F++MP  D V W+ M++ F +
Sbjct: 276 TCYELD-------PRVGV---GLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
           NG  +     F R  E GF   ++ + + IL+ C   + S + + +H LV   G++ +V 
Sbjct: 326 NGFCNKAVDIFIRMRE-GFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVY 384

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           V NALI  Y KC    +  K+F E+  +NV++W  VI G        + L +F +     
Sbjct: 385 VSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQ 444

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
           ++   +T+ S++ AC+ L ++  G Q+HG+  K      + + ++L+DMY+KCG ++ A 
Sbjct: 445 VSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQ 504

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F   E +D  S   ++ G++ +G   +A+++F  M   G +  PN ++  LGV    +
Sbjct: 505 TVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIM--KGSDCKPNGLT-FLGVLSGCS 561

Query: 373 SLGLGKQ----IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           + GL  Q      S+I   D    P + +   ++ ++ + G L+ ++ +   +    SV 
Sbjct: 562 NAGLIDQGQDCFESMI--CDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVM 619

Query: 427 -WNSMI-AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
            W +M+ A+  ++   F      E +K+   +      LS ++A
Sbjct: 620 IWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYA 663



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 18/324 (5%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           LD  ++  +L  C R   S+ +K IHC +   G   ++   N L+ +Y K G       +
Sbjct: 47  LDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQ 271
           F EM  RN +++      L Q    ++ + L+ ++H     +NP+  T    +       
Sbjct: 107 FDEMPERNNVSYVT----LTQGYACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKA 162

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            +C    +H  + KL   S+  + +AL++ YS CGSV+ A  +FE     D V    I+ 
Sbjct: 163 EIC--WWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVS 220

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-----KQIHSLIIK 386
            + +NG  E+++QL  +M   G   +       L       S+GLG     K +H  I+K
Sbjct: 221 CYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTAL-----KASIGLGAFHFAKSVHGQILK 275

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           + +  +P V  GL+ +Y++ GD+ D+ KVF+ M   + V W+ MIA F ++G   KA+++
Sbjct: 276 TCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDI 335

Query: 447 YEEMKLEGVEPTDVTFLSLLHACS 470
           +  M+   V P + T  S+L+ C+
Sbjct: 336 FIRMREGFVVPNEFTLSSILNGCA 359


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/540 (34%), Positives = 297/540 (55%), Gaps = 8/540 (1%)

Query: 108 AVKLFD--DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           A++LF     P R   S+N ++  FLR G  +     F   L+      DQ +    + +
Sbjct: 121 AIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKS 180

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C R     V + +    +  G+  +  V N+LI  Y  CG   +   +F  ++V+ VI W
Sbjct: 181 CSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAW 240

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILW 284
            A+I+G V+N  ++E +++F  M L +  P + +T LS   AC  L     G+ I     
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGM-LEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAE 299

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           +  +     + +AL+DMY+KCG ++ A ++F+     D V+ + ++ G+ Q+    EA+ 
Sbjct: 300 EKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALA 359

Query: 345 LFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +F +M   G E++PN V+  +VL    V  +L  GK +HS I + D      +   L++ 
Sbjct: 360 IFNEM--QGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDF 417

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG ++D++K F  M  RN+ +W ++I   A +G   +ALEL+  M    +EPTDVTF
Sbjct: 418 YAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTF 477

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           + +L ACSH  LV +G     SMT+ + I PR EHY C+VD++GRAGL+ EA  FI  MP
Sbjct: 478 IGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP 537

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           ++P+ +VW+ALL AC++H + E+G+ A +++    P     YIL++N Y+  G+WK  A 
Sbjct: 538 IEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAM 597

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
             K MKE GV+K  G S IE+E  +  F  +D  HPQ   I+  + E++  +   GY+PN
Sbjct: 598 VRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPN 657



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 187/372 (50%), Gaps = 10/372 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSL+  Y  C  +  A  LF  + ++  ++WN M++G+++NG++      FK  LE+ 
Sbjct: 208 VLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR 267

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D+ +   + +AC R   + + + I       G      +  AL+  Y KCG     
Sbjct: 268 -APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKA 326

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R++F  M  R+V+ W+A+ISG  Q+    E L +F +M    +NPN +T +S + AC+ L
Sbjct: 327 RRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVL 386

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  G+ +H  + +  L   + + +AL+D Y+KCG ++DA + FE     +  + T ++
Sbjct: 387 GALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALI 446

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G A NG   EA++LF  M++A IE        VL        +  G++ H   +  D+ 
Sbjct: 447 KGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRR-HFTSMTQDYG 505

Query: 391 SNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELY 447
             P + +   ++++  + G ++++ +    M    N+V W ++++A   H N    +E+ 
Sbjct: 506 ICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN----VEIG 561

Query: 448 EEMKLEGVEPTD 459
           EE  L+ + P D
Sbjct: 562 EE-ALKQIVPLD 572



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 11/124 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +LS  A  G    G  +H S+I+           ++P   ++  +L+ FY KC
Sbjct: 372 NDVTMVSVLSACAVLGALETGKWVH-SYIRR---------KDLPLTVILGTALVDFYAKC 421

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +++AVK F+ MP+R+T +W  ++ G   NG        F   LE      D  +F  +
Sbjct: 422 GCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD-VTFIGV 480

Query: 163 LSAC 166
           L AC
Sbjct: 481 LLAC 484


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 320/588 (54%), Gaps = 25/588 (4%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           ++ GH   G ++HA  I          +  + +   + NSL+S Y KC +M  A ++FD 
Sbjct: 120 SRAGHLRAGRAVHALAI----------LDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDV 169

Query: 115 MPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSLELGFYQLDQASFTIILSACD-RSE 170
              RD VSWN++VSG++R G   E    F   +R    G   L+  +   ++  C  R +
Sbjct: 170 AEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRR----GGMGLNSFALGSVIKCCSGRGD 225

Query: 171 LSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            ++ +++ +H  V   G + +V + +A+I  Y K G+      +F  ++  NV+ +  +I
Sbjct: 226 GTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMI 285

Query: 230 SG------LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +G      ++  ++  E L L+ ++    + P   T+ S + AC+    L  G+QIHG +
Sbjct: 286 AGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQV 345

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K   Q D  I SAL+D+Y   G +ED ++ F  + + D V+ T ++ G  QN   E+A+
Sbjct: 346 IKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKAL 405

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF + + AG++ D   +S+V+           G+QI     KS F     + N  ++MY
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMY 465

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           ++ GD++ + + F  M   + VSW+++I+  A+HG    AL  ++EM    V P ++TFL
Sbjct: 466 ARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFL 525

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L ACSH GLV++G+ + ++MT+ + +SP  +H  CVVD++GRAG L +A +FI     
Sbjct: 526 GVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIF 585

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             D ++W++LL +C IH D E G+  A ++   +P S A Y+++ N+Y  +G     +K 
Sbjct: 586 HADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKT 645

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
              MK+ GV KE G+SWIE++  VHSFV  DK HP++  I+  L E+L
Sbjct: 646 RDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEML 693



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 230/467 (49%), Gaps = 16/467 (3%)

Query: 86  PNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           P A++ + N+LL+ Y +      A +L D+MP R+ VS+N ++  + R G   +      
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           R+   G   +D+ S+   L+AC R+      + +H L  L G    V V N+L++ Y KC
Sbjct: 99  RARRAGV-DVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKC 157

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R+VF     R+ ++W +++SG V+    EE +++F  M  G +  NS    S +
Sbjct: 158 GEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVI 217

Query: 265 MACSGL--QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
             CSG     +     +HG + K  L SD+ + SA++DMY+K G++ +A  +F   +E +
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 323 GVSMTVILVGFAQN----GFE--EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
            V    ++ GF +     G E   EA+ L+ ++   G++      S+VL    +   L  
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GKQIH  +IK  F  + F+ + LI++Y   G +ED  + F      + V+W +M++   +
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEVHRISPR 494
           +    KAL L+ E    G++P   T  S+++AC+ + +   G  ++   + +   R +  
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               +C V M  R+G +  A    + M    DV+ W A++   + HG
Sbjct: 458 GN--SC-VHMYARSGDVDAATRRFQEME-SHDVVSWSAVISCHAQHG 500



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 134/274 (48%), Gaps = 16/274 (5%)

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           + L + + L+  Y + G    A ++ +     + VS  +++  +++ G    +++   + 
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            +AG+++D    +A L        L  G+ +H+L I    +S  FV+N L++MYSKCG++
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            ++ +VF     R+ VSWNS+++ + R G   + + ++  M+  G+        S++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAE------HYACVVDMVGRAGLLIEARSFIERMPV 523
           S      +G   +     VH    +A         + ++DM  + G L+EA +   R   
Sbjct: 221 S-----GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALF-RSVQ 274

Query: 524 KPDVLVWQALL-GACSIHGDSEMGK-YAAEKLFL 555
           +P+V+++  ++ G C    ++ +GK  A+E L L
Sbjct: 275 EPNVVMFNTMIAGFCRT--ETVIGKEVASEALTL 306


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 188/589 (31%), Positives = 300/589 (50%), Gaps = 11/589 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG + HA  ++   P           +  I   L++ Y K D    A       P    V
Sbjct: 33  LGRAAHARALRLIAP---------ALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVV 83

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           S+   +SG  ++G        F   L LG    D    +   +A      S +   IH L
Sbjct: 84  SYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSL 143

Query: 182 VYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
               GY   +  V  A +  YFK G     R +FGEM  RNV+ W AV++  V +    E
Sbjct: 144 AIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLE 203

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            ++ +  +      PN ++  +   AC+G   L  G Q HG + K   + D+ + ++++D
Sbjct: 204 TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVD 263

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
            Y KC     A  +F+     + VS   ++  +AQNG EEEA   ++   ++G E    M
Sbjct: 264 FYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFM 323

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           VS+ L        L LG+ +H++ ++S   +N FV + L++MY KCG +ED+ ++F    
Sbjct: 324 VSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGM 479
            RN V+WN+MI  +A  G+   AL ++++M   G   P  +T ++++ +CS  GL   G 
Sbjct: 384 QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY 443

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           E  ++M E   I PR EHYACVVD++GRAG+  +A   I+ MP++P + VW ALLGAC +
Sbjct: 444 ELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 503

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG +E+G+ AAEKLF   P     ++L++N+++ +GRW E     K MK +G+ K+ G S
Sbjct: 504 HGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCS 563

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           W+  +  VH F   D  H   + I  +L++L + M   GY+P+ ++ L+
Sbjct: 564 WVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLY 612



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 16/321 (4%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N V      +  A   +  LG   H   +K     D            + NS++ FY 
Sbjct: 217 LPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMD----------VSVLNSMVDFYG 266

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC     A  +FD M +R++VSW +MV+ + +NG  +  F  +  +   G    D    +
Sbjct: 267 KCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSS 326

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            + +      L L  + +H +      +  + V +AL+  Y KCG      ++F E   R
Sbjct: 327 ALTTCAGLLGLHL-GRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR 385

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           N++TW A+I G       +  L +F  M   G   PN +T ++ + +CS      +G ++
Sbjct: 386 NLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYEL 445

Query: 280 HGILW-KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
              +  +  ++      + ++D+  + G  E A+++ +       +S+   L+G  +   
Sbjct: 446 FETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 505

Query: 339 EEEAMQLFVKMVKAGIEIDPN 359
           + E  ++  + +    E+DP 
Sbjct: 506 KTELGRIAAEKL---FELDPQ 523



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKV 415
           DP +++A         S  LG+  H+  ++    + +PF+   L+N+YSK  DL  +   
Sbjct: 14  DPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKL-DLPAAAAA 72

Query: 416 FSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
                P  + VS+ + I+  A+HG    AL  +  M   G+ P D TF S   A +    
Sbjct: 73  ALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPP 132

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +     + S+       P     +C  +DM  + G L  AR     MP + +V+ W A+
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAV 191

Query: 534 L 534
           +
Sbjct: 192 M 192


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 312/578 (53%), Gaps = 22/578 (3%)

Query: 75  EPFDNQNVYNVPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           E FD      VP+  V ++  ++S Y + +++ +A+ LFD+MP+RD VSWN+M+SG +  
Sbjct: 56  EVFDQ-----VPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVEC 110

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G+ D     F    E         S+T +++ C R  +   ++ + C + +    +++  
Sbjct: 111 GDIDTAVKMFDEMPERSV-----VSWTAMVNGCFRFGMVDQAERLFCQMPV----KDIAA 161

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
            NA++  Y + G      K+F +M  +NVI+WT +I GL QN+   E L LF  M    I
Sbjct: 162 WNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCI 221

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
              S T+   + AC+   A   G Q+HG + K     +  + ++L+ +Y+ C   ED+ +
Sbjct: 222 KSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRK 281

Query: 314 IF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
           +F E   E   V  T +L G++ N   E+A+ +F +M++  I  + +  ++ L       
Sbjct: 282 VFGEMVHEKVAV-WTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALG 340

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +L  GK+IH + +K    +  FV N L+ MYS  G++ D++ VF  +  ++ VSWNS+I 
Sbjct: 341 TLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIV 400

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRI 491
             A+HG G  A  ++ +M     EP ++TF  LL ACSH G + KG +    ++  ++ I
Sbjct: 401 GCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHI 460

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
             + +HY C+VD++GR G L EA   IE M VKP+ +VW ALL AC +H D + G+ AA 
Sbjct: 461 DRKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAA 520

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
            +F     S A Y+L++NIY+ +GRW   +K   +MK+ G+ K+ G SW+ I  + H F 
Sbjct: 521 AIFNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFF 580

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
             D+  P    I   L E LR  + E GYVP+ R  LH
Sbjct: 581 SGDR--PHCLRIFEKL-EFLREKLKELGYVPDYRSALH 615



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 22/184 (11%)

Query: 377 GKQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           GK   S  +  +F +    + N L+N       L+++ +VF ++   +   +  MI+ + 
Sbjct: 23  GKSFRSYSVTVEFQNREVLICNHLLNR-----RLDEAREVFDQVPSPHVSLYTKMISGYT 77

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           R      AL L++EM L  V    V++ S++  C   G ++  ++    M E   +S   
Sbjct: 78  RSNRLVDALNLFDEMPLRDV----VSWNSMISGCVECGDIDTAVKMFDEMPERSVVS--- 130

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY-AAEKLF 554
             +  +V+   R G++ +A     +MPVK D+  W A+     +HG  + GK   A KLF
Sbjct: 131 --WTAMVNGCFRFGMVDQAERLFCQMPVK-DIAAWNAM-----VHGYLQFGKVDDALKLF 182

Query: 555 LAQP 558
              P
Sbjct: 183 KQMP 186


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/540 (34%), Positives = 297/540 (55%), Gaps = 40/540 (7%)

Query: 112 FDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171
           FD +P +D  +WN+M+S ++ NG F    G F + L +   + D  +F  +L AC     
Sbjct: 74  FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG---- 129

Query: 172 SLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           +LV  + IHC  +  G++  V V  +LI  Y + G +   R +F +M  R++ +W A+IS
Sbjct: 130 TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS 189

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           GL+QN    + L +  +M L  I  N +T +S                            
Sbjct: 190 GLIQNGNAAQALDVLDEMRLEGIKMNFVTVVS---------------------------- 221

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
              I    +DMY+K G ++ A ++FE     D +S   ++ G+AQNG   EA++++ KM+
Sbjct: 222 ---ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMM 277

Query: 351 KAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           +   EI PN  +  ++L  +    +L  G +IH  +IK++   + FV   LI++Y KCG 
Sbjct: 278 EECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGR 337

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L D++ +F ++   +SV+WN++I+    HG+  K L+L+ EM  EGV+P  VTF+SLL A
Sbjct: 338 LVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 397

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           CSH G V +G    + M E + I P  +HY C+VD++GRAG L  A  FI+ MP++PD  
Sbjct: 398 CSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDAS 456

Query: 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           +W ALLGAC IHG+ E+GK+A+++LF     +   Y+L++NIY+  G+W+   K     +
Sbjct: 457 IWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLAR 516

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           E G+ K  G S IE+ ++V  F   ++ HP+   I+  L  L   M   GY+P+  F+L 
Sbjct: 517 ERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQ 576



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 157/355 (44%), Gaps = 39/355 (10%)

Query: 92  WN-----SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           WN     SL+  Y +      A  LFDDMP RD  SWN M+SG ++NG            
Sbjct: 148 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG------------ 195

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
                    QA     L   D   L  + KM    V        V++    +  Y K G 
Sbjct: 196 ------NAAQA-----LDVLDEMRLEGI-KMNFVTV--------VSILPVFVDMYAKLGL 235

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVM 265
             S  KVF  + V++VI+W  +I+G  QN L  E ++++  M     I PN  T++S + 
Sbjct: 236 LDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILP 295

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A + + AL +G +IHG + K  L  D+ + + L+D+Y KCG + DA  +F    +   V+
Sbjct: 296 AYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT 355

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              I+     +G  E+ ++LF +M+  G++ D     ++L        +  GK    L+ 
Sbjct: 356 WNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ 415

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           +     +      ++++  + G LE +      M  +   S W +++ A   HGN
Sbjct: 416 EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 470



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           EID N +      F   T     K +H+L++ +    + F++  L+N+Y+  GD+  S  
Sbjct: 19  EIDFNFL------FDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRC 72

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALE-LYEEMKLEGVEPTDVTFLSLLHACSHVG 473
            F ++  ++  +WNSMI+A+  +G+  +A+   Y+ + +  + P   TF  +L AC  + 
Sbjct: 73  TFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL- 131

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531
                ++  K      ++  +   +  A ++ M  R G    ARS  + MP + D+  W 
Sbjct: 132 -----VDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWN 185

Query: 532 ALLGACSIHGDS 543
           A++     +G++
Sbjct: 186 AMISGLIQNGNA 197


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 311/565 (55%), Gaps = 35/565 (6%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N L++ Y KC  + +A ++F  M  +D+VSWN+M++G  +N  F       +R   + 
Sbjct: 351 IGNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCF---IEAVERYQSMR 407

Query: 151 FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            +++   SFT+I  +S+C   + + + + IH      G +  V+V NAL+T Y + G  +
Sbjct: 408 RHEILPGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLN 467

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             RK+F  M   + ++W ++I  L  ++    E +  F+         N +T+ S + A 
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAV 527

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSM 326
           S L     G+QIHG+  K  +  +   E+AL+  Y KCG ++   +IF   +E  D V+ 
Sbjct: 528 SSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTW 587

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+  N    +A+ L   M++ G  +D  M + VL  F    +L  G ++H+  ++
Sbjct: 588 NSMISGYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+  V + L++MYSKCG L+ +++ F+ M                          L
Sbjct: 648 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMP-------------------------L 682

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +  MKL+G  P D VTF+ +L ACSH GL+ +G +  +SM++ + ++PR EH++C+ D++
Sbjct: 683 FANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLL 742

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAP 563
           GRAG L +   FIE+MP+KP+VL+W+ +LGAC       +E+GK AAE LF  +P++   
Sbjct: 743 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 802

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L+ N+Y+  GRW++  KA K+MK+  V KE G SW+ ++  VH FV  DK HP AD I
Sbjct: 803 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVI 862

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L EL R M D GYVP   F L+
Sbjct: 863 YKKLKELNRKMRDAGYVPQTGFALY 887



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 135/459 (29%), Positives = 228/459 (49%), Gaps = 23/459 (5%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ YL+     +A K+FD+MP+R+ VSW  +VSG+ RNGE      F +  ++ G +
Sbjct: 40  NNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYSRNGEHKEALVFLRDMVKEGVF 99

Query: 153 QLDQASFTIILSACDR--SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SS 209
             +  +F   L AC    S   L  + IH L++   Y  +  V N LI+ Y+KCG S   
Sbjct: 100 S-NHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAVDAVVSNVLISMYWKCGGSLGY 158

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV-MACS 268
             + F +++V+N ++W ++IS   Q        K+F  M      P   T+ S V  ACS
Sbjct: 159 ALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACS 218

Query: 269 GLQA---LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
             +    L E  QI   + K    +DL + S L+  ++K GS+  A +IF   E  + V+
Sbjct: 219 LTEPDVRLLE--QIMCTIQKSGFLTDLFVGSGLVSAFAKSGSLIHARKIFNQMETRNAVT 276

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF-----GVDTSLGLGKQI 380
           +  ++VG  +  + EEA +LF+ M  + I++ P     +L  F       +  L  G+++
Sbjct: 277 LNGLMVGLVRQKWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREV 335

Query: 381 HSLIIKS---DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH 437
           H  +I +   DF     + NGL+NMY+KCG + D+ +VF  M  ++SVSWNSMI    ++
Sbjct: 336 HGHVITTGLVDFMVG--IGNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQN 393

Query: 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               +A+E Y+ M+   + P   T +S + +C+ +     G +      ++  I      
Sbjct: 394 SCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQQIHGESLKLG-IDLNVSV 452

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
              ++ +    G L E R     MP + D + W +++GA
Sbjct: 453 SNALMTLYAETGCLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 155/527 (29%), Positives = 252/527 (47%), Gaps = 46/527 (8%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + + L+S + K   + +A K+F+ M  R+ V+ N ++ G +R    +     F     + 
Sbjct: 245 VGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM- 303

Query: 151 FYQLDQASFTIILSACDRSELSLVSKM-------IHCLVYLCGYEE-EVTVGNALITSYF 202
              +   S+ I+LS+    E SL  ++       +H  V   G  +  V +GN L+  Y 
Sbjct: 304 -IDVSPESYVILLSSF--PEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYA 360

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           KCGS +  R+VF  M  ++ ++W ++I+GL QN  + E ++ +  M    I P S T +S
Sbjct: 361 KCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLIS 420

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           S+ +C+ L+    G+QIHG   KL +  ++ + +ALM +Y++ G + +  +IF    E D
Sbjct: 421 SISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHD 480

Query: 323 GVSMTVILVGFAQNGFE-EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381
            VS   I+   A +     EA+  F+  ++AG +++    S+VL      +   LGKQIH
Sbjct: 481 QVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIH 540

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNG 440
            L +K +        N LI  Y KCG+++   K+FSRM+  R+ V+WNSMI+ +  +   
Sbjct: 541 GLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELL 600

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHY 498
            KAL+L   M   G       + ++L A + V  + +GM       EVH  S RA  E  
Sbjct: 601 AKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGM-------EVHACSVRACLESD 653

Query: 499 ACV----VDMVGRAGLLIEARSFIERMPV----------KPDVLVWQALLGACSIHGDSE 544
             V    VDM  + G L  A  F   MP+           PD + +  +L ACS  G  E
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAGLLE 713

Query: 545 MGKYAAEKLFLAQPDSP--APYILMANIYSCSGRWKERAKAIKRMKE 589
            G     K F +  DS   AP I     +SC      RA  + ++++
Sbjct: 714 EGF----KHFESMSDSYGLAPRI---EHFSCMADLLGRAGELDKLED 753



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 214/444 (48%), Gaps = 27/444 (6%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            +K+ H  +Y  G E++V + N LI +Y + G S S RKVF EM +RN ++W  V+SG  
Sbjct: 19  AAKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYS 78

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA--LCEGRQIHGILWKLALQSD 291
           +N  ++E L     M    +  N   ++S++ AC  L +  +  GRQIHG+L+KL+   D
Sbjct: 79  RNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAVD 138

Query: 292 LCIESALMDMYSKC-GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
             + + L+ MY KC GS+  A + F+  +  + VS   I+  ++Q G +  A ++F  M 
Sbjct: 139 AVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQ 198

Query: 351 KAGIEIDPNMVSAVLGVFG--VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
             G         +++       +  + L +QI   I KS F ++ FV +GL++ ++K G 
Sbjct: 199 CDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVSAFAKSGS 258

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           L  + K+F++M  RN+V+ N ++    R   G +A +L+ +M    ++ +  +++ LL +
Sbjct: 259 LIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSS 317

Query: 469 ------CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
                    VGL  KG E    +     +         +V+M  + G + +AR     M 
Sbjct: 318 FPEYSLAEEVGL-KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMT 376

Query: 523 VKPDVLVWQALL-----GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG-R 576
            K D + W +++      +C I            ++       P  + L+++I SC+  +
Sbjct: 377 EK-DSVSWNSMITGLDQNSCFIEAVERYQSMRRHEIL------PGSFTLISSISSCASLK 429

Query: 577 WKERAKAIK-RMKEMGVDKETGIS 599
           W +  + I     ++G+D    +S
Sbjct: 430 WAKLGQQIHGESLKLGIDLNVSVS 453



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 83  YNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MRDTVSWNTMVSGFLRNGEFDMGFG 141
           YN+ +     N+L++ Y KC +M    K+F  M   RD V+WN+M+SG++ N        
Sbjct: 546 YNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALD 605

Query: 142 FFKRSLELGFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
                ++ G  +LD   +  +LSA    + L    ++  C V  C  E +V VG+AL+  
Sbjct: 606 LVWFMMQTG-QRLDSFMYATVLSAFASVATLERGMEVHACSVRAC-LESDVVVGSALVDM 663

Query: 201 YFKCGSSSSGRKVFGEMRV-----------RNVITWTAVISGLVQNQLYEEGLKLFVKM 248
           Y KCG      + F  M +            + +T+  V+S      L EEG K F  M
Sbjct: 664 YSKCGRLDYALRFFNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESM 722



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%)

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
           G  K  HS + K+    + ++ N LIN Y + GD   + KVF  M  RN VSW  +++ +
Sbjct: 18  GAAKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGY 77

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           +R+G   +AL    +M  EGV      F+S L AC  +  V
Sbjct: 78  SRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSV 118


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 303/552 (54%), Gaps = 7/552 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   + NSL S Y  C +M  A ++FD     D VSWN+++SG++R G  +     F   
Sbjct: 136 NGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLM 195

Query: 147 LELGFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
              G      A  +II      S++   +++ +H  V   G + ++ + +A+I  Y K G
Sbjct: 196 CHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRG 255

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQ------LYEEGLKLFVKMHLGLINPNSLT 259
           + ++   +F  +   NVI + A+I+G  +++      +  E L L+ +M    + P+  T
Sbjct: 256 ALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFT 315

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
           + S + AC+       G+QIHG + K +   D  I SAL+D+YS  G +ED ++ F    
Sbjct: 316 FSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLP 375

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           + D V+ T ++ G  QN   E+A++LF + +  G++ D   +S+V+           G+Q
Sbjct: 376 KQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQ 435

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I  L IK  F     + N  I+M ++ GD++   + F  M  R+ VSW+++I++ A+HG 
Sbjct: 436 IQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGC 495

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
              AL ++ EM    V P +VTFL++L ACSH GLV+ G+ + + M   + +SP  +H  
Sbjct: 496 ARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVT 555

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           CVVD++GRAG L +A +FI       D +VW++LL +C IHGD E G+  A+++   +P 
Sbjct: 556 CVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPT 615

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           S A Y+++ N+Y  +G     +K    MKE GV KE G+SWIE+   VHSFV  DK HP+
Sbjct: 616 SSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPE 675

Query: 620 ADTIHGVLAELL 631
           ++ I+  LAE+L
Sbjct: 676 SNAIYKKLAEML 687



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 236/472 (50%), Gaps = 23/472 (4%)

Query: 86  PNATV-IWNSLLSFY--LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           P A++ + NSLL+ Y  L      +A +L D+MP R+ VS+N ++S + R G        
Sbjct: 30  PTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALET 89

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F R+      ++D+ ++   L+AC R+      K +H +  L G    V + N+L + Y 
Sbjct: 90  FARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYA 149

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYL 261
            CG     R+VF      + ++W +++SG V+    EE LK+F  M H GL   NS    
Sbjct: 150 SCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGL-GWNSFALG 208

Query: 262 SSVMACSGLQALCEGRQI----HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
           S +  C+    +  GR I    HG + K  L +DL + SA++DMY+K G++ +A  +F+ 
Sbjct: 209 SIIKCCASGSDV--GRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKS 266

Query: 318 AEELDGVSMTVILVGFAQN----GFE--EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             + + +    ++ GF ++    G E   EA+ L+ +M   G++      S++L    + 
Sbjct: 267 VPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLA 326

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
              G GKQIH  ++K  F  + ++ + LI++YS  G +ED  + F  +  ++ V+W SMI
Sbjct: 327 GEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMI 386

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEVH 489
           +   ++    KAL L++E    G++P   T  S+++AC+ + +   G  ++ L      +
Sbjct: 387 SGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFN 446

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           R +     +   + M  R+G +       + M  + DV+ W A++ + + HG
Sbjct: 447 RFTAMGNSF---IHMCARSGDVDAVTRRFQEMESR-DVVSWSAVISSHAQHG 494


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/589 (31%), Positives = 300/589 (50%), Gaps = 11/589 (1%)

Query: 62  LGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           LG + HA  ++   P           +  I   L++ Y K D    A       P    V
Sbjct: 33  LGRAAHARALRLIAP---------ALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVV 83

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           S+   +SG  ++G        F   L LG    D    +   +A      S +   IH L
Sbjct: 84  SYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSL 143

Query: 182 VYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
               GY   +  V  A +  YFK G     R +FGEM  RNV+ W AV++  V +    E
Sbjct: 144 AIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLE 203

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            ++ +  +      PN ++  +   AC+G   L  G Q HG + K   + D+ + ++++D
Sbjct: 204 TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVD 263

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
            Y KC     A  +F+     + VS   ++  +AQNG EEEA   ++   ++G E    M
Sbjct: 264 FYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFM 323

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           VS+ L        L LG+ +H++ ++S   +N FV + L++MY KCG +ED+ ++F    
Sbjct: 324 VSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETP 383

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGM 479
            RN V+WN+MI  +A  G+   AL ++++M   G   P  +T ++++ +CS  GL   G 
Sbjct: 384 QRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGY 443

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
           E  ++M E   I PR EHYACVVD++GRAG+  +A   I+ MP++P + VW ALLGAC +
Sbjct: 444 ELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKM 503

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG +E+G+ AAEKLF   P     ++L++N+++ +GRW E     K MK +G+ K+ G S
Sbjct: 504 HGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCS 563

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           W+  +  VH F   D  H   + I  +L++L + M   GY+P+ ++ L+
Sbjct: 564 WVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLY 612



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 16/321 (4%)

Query: 41  LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYL 100
           L N V      +  A   +  LG   H   +K     D            + NS++ FY 
Sbjct: 217 LPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMD----------VSVLNSMVDFYG 266

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           KC     A  +FD M +R++VSW +MV+ + +NG  +  F  +  +   G    D    +
Sbjct: 267 KCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSS 326

Query: 161 IILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR 220
            + +      L L  + +H +      +  + V +AL+  Y KCG      ++F E   R
Sbjct: 327 ALTTCAGLLGLHL-GRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQR 385

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           N++TW A+I G       +  L +F  M   G   PN +T ++ + +CS      +G ++
Sbjct: 386 NLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYEL 445

Query: 280 HGILW-KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
              +  +  ++      + ++D+  + G  E A+++ +       +S+   L+G  +   
Sbjct: 446 FETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHG 505

Query: 339 EEEAMQLFVKMVKAGIEIDPN 359
           + E  ++  + +    E+DP 
Sbjct: 506 KTELGRIAAEKL---FELDPQ 523



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 5/181 (2%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKV 415
           DP +++A         S  LG+  H+  ++    + +PF+   L+N+YSK  DL  +   
Sbjct: 14  DPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKL-DLPAAAAA 72

Query: 416 FSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
                P  + VS+ + I+  A+HG    AL  +  M   G+ P D TF S   A +    
Sbjct: 73  ALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPP 132

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYAC-VVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
            +     + S+       P     +C  +DM  + G L  AR     MP + +V+ W A+
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAV 191

Query: 534 L 534
           +
Sbjct: 192 M 192


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 198/593 (33%), Positives = 327/593 (55%), Gaps = 22/593 (3%)

Query: 58  GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL--LSFYLKCDQMRNAVKLFDDM 115
           G F     +H   +K    + N ++Y V +A  ++  L  L F         A K+FD+ 
Sbjct: 200 GDFKNANVVHGMLVKLGSEYVN-DLYVVSSAIFMYAELGCLEF---------AKKVFDNC 249

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
             R+T  WNTM+S F++N     G   F +++E     +D+ +    +SA    +   ++
Sbjct: 250 LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELA 309

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + +H  V       +V V NALI  Y +C S  +  K+F  M  ++V++W  +IS  VQN
Sbjct: 310 EQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 369

Query: 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
            L +E L LF +M    +  +S+T  + + A S L+    G+Q HG L +  +Q +  ++
Sbjct: 370 GLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFE-GMD 428

Query: 296 SALMDMYSKCGSVEDAWQIFE--FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           S L+DMY+K G +E A  +FE  F+ E D  +   ++ G+ QNG  ++A  +  +M+   
Sbjct: 429 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQ- 487

Query: 354 IEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411
            ++ PN+V+  ++L        +  GKQ+H   I++D   N FV   LI+MYSK G +  
Sbjct: 488 -KVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAH 546

Query: 412 SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           +  VFS+   ++ V++++MI  + +HG G  AL ++  M+  G++P  VT +++L ACS+
Sbjct: 547 AENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSY 606

Query: 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL-VW 530
            GLV++G++  +SM  V+ I P  EH+ CV DM+GRAG + +A  F+  +  K +V+ +W
Sbjct: 607 AGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIW 666

Query: 531 QALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPY-ILMANIYSCSGRWKERAKAIKRMK 588
            +LL AC IH   E+GK  A+KL  + + +    Y +L++NIY+    W+      K+M+
Sbjct: 667 GSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMR 726

Query: 589 EMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           E G+ KETG SWIEI   ++ F   D+ HPQ+D I+ +L ELL  M   GY P
Sbjct: 727 ERGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKHAGYRP 779



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/468 (27%), Positives = 228/468 (48%), Gaps = 44/468 (9%)

Query: 104 QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL--DQASFTI 161
           Q+  A +LFD +P   TV WNT++ G + N   D    F+  +++    Q+  D  +++ 
Sbjct: 19  QLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYS-NMKSSSPQVKCDSYTYSS 77

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS------SG----- 210
           +L AC  +   +V K +H     C       V N+L+  Y  C S++      SG     
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 211 --RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             RKVF  MR R V+ W  +I+  V+ + Y E +K F  M    I P+ +++++   A S
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 197

Query: 269 GLQALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            L        +HG+L KL  +  +DL + S+ + MY++ G +E A ++F+   E +    
Sbjct: 198 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 257

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             ++  F QN F  E +QLF + V++    ID   + + +          L +Q+H+ +I
Sbjct: 258 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 317

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           K+   +   V N LI MYS+C  ++ S K+F  M  ++ VSWN+MI+AF ++G   +AL 
Sbjct: 318 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 377

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVNKGMEFLKSMTEVHRISPR 494
           L+ EMK + +    VT  +LL A S           H  L+  G++F + M         
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQF-EGMD-------- 428

Query: 495 AEHYACVVDMVGRAGLLIEARSFIER-MPVKPDVLVWQALLGACSIHG 541
               + ++DM  ++GL+  A++  E+    + D   W +++   + +G
Sbjct: 429 ----SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG 472



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 137/552 (24%), Positives = 249/552 (45%), Gaps = 66/552 (11%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S++V ++ +++  + S +  +G    G S      K F+    + V       V WN+L+
Sbjct: 106 SRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTV-------VAWNTLI 158

Query: 97  SFYLKCDQMRNAVKLFDDMPMR-----DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           ++Y++ ++   AVK F  M M+       VS+  +   F   G+F               
Sbjct: 159 AWYVRTERYAEAVKQF-SMMMKIGIKPSPVSFVNVFPAFSSLGDFKN------------- 204

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG--YEEEVTVGNALITSYFKCGSSSS 209
                                  + ++H ++   G  Y  ++ V ++ I  Y + G    
Sbjct: 205 -----------------------ANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF 241

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF---VKMHLGLINPNSLTYLSSVMA 266
            +KVF     RN   W  +IS  VQN    EG++LF   V+     I  + +T LS++ A
Sbjct: 242 AKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAI--DEVTLLSAISA 299

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
            S LQ      Q+H  + K    + +C+ +AL+ MYS+C S++ +++IF+   E D VS 
Sbjct: 300 ASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSW 359

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++  F QNG  +EA+ LF +M K  + +D   V+A+L       +  +GKQ H  +++
Sbjct: 360 NTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLR 419

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKAL 444
           +       +++ LI+MY+K G +E +  VF +     R+  +WNSM++ + ++G   +A 
Sbjct: 420 NGIQFEG-MDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAF 478

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            +  +M  + V P  VT  S+L AC+  G ++ G + L   +  + +         ++DM
Sbjct: 479 LILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQ-LHGFSIRNDLDQNVFVATALIDM 537

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPA 562
             ++G +  A +   +   K  V     +LG    +G   MG+ A       Q     P 
Sbjct: 538 YSKSGSIAHAENVFSKANEKSIVTYSTMILG----YGQHGMGESALFMFHRMQKSGIQPD 593

Query: 563 PYILMANIYSCS 574
              L+A + +CS
Sbjct: 594 AVTLVAVLSACS 605


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 303/553 (54%), Gaps = 3/553 (0%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N   +  SLL+ Y KC  + +A  +FD + ++ T  WN M+S ++ NG    G   +K+ 
Sbjct: 289 NDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQM 348

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             L     D  + T +LS+C         ++IH  +     +  V + +AL+T Y KCG+
Sbjct: 349 KVLQI-PPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGN 407

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
           S     +F  ++ R+V+ W ++ISG  QN+ Y E L+ +  M +    P+S    S V A
Sbjct: 408 SDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSA 467

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+GL+ +  G  IHG+  K  L+ D+ + S+L+DMYSK    + +  +F      + V+ 
Sbjct: 468 CTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAW 527

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             I+  + +NG  + ++ LF +M + G+  D   +++VL        L  GK +H  +I+
Sbjct: 528 NSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIR 587

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
               S+  + N LI+MY KCG L+ +  +F  M   N V+WN MIA    HG+  KA+ L
Sbjct: 588 QRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSL 647

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           ++EM+  G+ P D+TF+SLL +C+H G + +G++  + MT  H I PR EHY  +VD++G
Sbjct: 648 FDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLG 707

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG L +A +F++ +P++PD  +W +LL +C +H + E+GK AA KL   +P   + Y+ 
Sbjct: 708 RAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQ 767

Query: 567 MANIYSCSGRWKERAKAIK-RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           + N+Y      ++RA  ++  MKE G+ K  G SWIE+   +  F   D   P+   I+ 
Sbjct: 768 LLNLYG-ENELQDRAANLRASMKEKGLKKTPGCSWIEVGNSIDVFFSGDSSSPRTIEIYD 826

Query: 626 VLAELLRLMIDEG 638
           +L  L R M  +G
Sbjct: 827 LLNSLRRNMRKKG 839



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 162/554 (29%), Positives = 271/554 (48%), Gaps = 36/554 (6%)

Query: 53  ISAKEGHFHLGPSLHA-SFIKTF--EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           + A +GH      +H  S  K F  +PF             + + L+  Y  C +  +A 
Sbjct: 163 LGASDGHLGYAKQIHGYSVRKVFYGDPF-------------LESGLIYMYFSCGRPLDAW 209

Query: 110 KLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY------QLDQASFTII 162
           +LF ++  + + V+WN M+ GF  NG        ++ SLE+         +L  ASFT  
Sbjct: 210 RLFKELEDKGNVVAWNVMIGGFGENG-------LWENSLEVYLLAKNENVKLVSASFTST 262

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LSAC + E       +HC +   G+E +  V  +L+T Y KC        VF ++ V+  
Sbjct: 263 LSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKT 322

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
             W A+IS  V N    +GLK++ +M +  I P+SLT  + + +C  + +   GR IH  
Sbjct: 323 ELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAE 382

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           L K  +QS++ ++SAL+ MYSKCG+ +DA  IF   +  D V+   ++ GF QN    EA
Sbjct: 383 LVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEA 442

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           ++ +  M   G + D +++++V+       ++ LG  IH L IKS    + FV + L++M
Sbjct: 443 LEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDM 502

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           YSK    + S  VFS M  +N V+WNS+I+ + R+G    ++ L+ +M   G+ P  V+ 
Sbjct: 503 YSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSI 562

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
            S+L + S V ++ KG      +    RI    +    ++DM  + G L  A+   + M 
Sbjct: 563 TSVLVSVSSVAVLRKGKAVHGYLIR-QRIPSDLQLENALIDMYIKCGFLKYAQHIFQNM- 620

Query: 523 VKPDVLVWQALLGACSIHGD--SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           ++ +++ W  ++  C  HGD    M  +   + F   PD      L+ +   C G  +E 
Sbjct: 621 LQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHC-GFIEEG 679

Query: 581 AKAIKRMK-EMGVD 593
            K  + M  E G++
Sbjct: 680 LKLFQLMTVEHGIE 693



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 254/541 (46%), Gaps = 36/541 (6%)

Query: 18  SSLVSPFITKIIQDPTSSTS-KLVLDNYVDISR-----LLSISAKEGHFHLGPSLHASFI 71
           S L+ P I  ++Q      + +    N ++ +R     LL       +   G ++H++ I
Sbjct: 17  SDLIDPKIVTLVQQGQYVDALQFYSRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTII 76

Query: 72  -KTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM-----RDTVSWNT 125
            K F        Y+ P  T    SL++FY KC    NAVK+FD +P      +D   WN+
Sbjct: 77  TKGF-------FYSDPYITT---SLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNS 126

Query: 126 MVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185
           +V+G+ R G    G   F R ++L   + D  S  I+L A D   L   +K IH      
Sbjct: 127 IVNGYFRFGHKKEGIAQFCR-MQLFGVRPDAYSLCILLGASD-GHLG-YAKQIHGYSVRK 183

Query: 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQLYEEGLKL 244
            +  +  + + LI  YF CG      ++F E+  + NV+ W  +I G  +N L+E  L++
Sbjct: 184 VFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEV 243

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           ++      +   S ++ S++ AC   + +  G Q+H  L KL  ++D  + ++L+ MYSK
Sbjct: 244 YLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSK 303

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           C  VEDA  +F+            ++  +  NG   + ++++ +M    I  D    + V
Sbjct: 304 CKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNV 363

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           L    +  S   G+ IH+ ++K    SN  + + L+ MYSKCG+ +D+  +F+ +  R+ 
Sbjct: 364 LSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDV 423

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF--- 481
           V+W SMI+ F ++    +ALE Y  M + G +P      S++ AC+ +  VN G      
Sbjct: 424 VAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGL 483

Query: 482 -LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
            +KS  E       +     +VDM  +      + +    MP+K +++ W +++     +
Sbjct: 484 AIKSGLEQDVFVASS-----LVDMYSKFNFPKMSGNVFSDMPLK-NLVAWNSIISCYCRN 537

Query: 541 G 541
           G
Sbjct: 538 G 538



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 167/343 (48%), Gaps = 20/343 (5%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG-ILWKLA 287
           I  LVQ   Y + L+ + +  L   N    TY S + AC  L  L  G+ IH  I+ K  
Sbjct: 24  IVTLVQQGQYVDALQFYSRNPL---NATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGF 80

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEF--AEELDGVSMTV---ILVGFAQNGFEEEA 342
             SD  I ++L++ Y KCGS  +A ++F+     E+ G  +T    I+ G+ + G ++E 
Sbjct: 81  FYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEG 140

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           +  F +M   G+  D   +  +LG    D  LG  KQIH   ++  F  +PF+ +GLI M
Sbjct: 141 IAQFCRMQLFGVRPDAYSLCILLG--ASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYM 198

Query: 403 YSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           Y  CG   D+ ++F  +  + N V+WN MI  F  +G    +LE+Y   K E V+    +
Sbjct: 199 YFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSAS 258

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIE 519
           F S L AC     V+ GM+      ++ ++    + Y C  ++ M  +  L+ +A +  +
Sbjct: 259 FTSTLSACCQGEFVSFGMQV---HCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFD 315

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGK--YAAEKLFLAQPDS 560
           ++ VK   L W A++ A   +G S  G   Y   K+    PDS
Sbjct: 316 QVSVKKTEL-WNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDS 357


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 317/574 (55%), Gaps = 13/574 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  LL ISA      +   +H   +K     D+Q            N+L+  Y KC
Sbjct: 260 NLVSVISLLPISAALEDEEMTRRIHCYSVKV--GLDSQ--------VTTCNALVDAYGKC 309

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++   ++F++   ++ VSWN++++G    G        F+  ++ G  Q +  + + I
Sbjct: 310 GSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAG-AQPNSVTISSI 368

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L      E     K IH      G E ++ + N+LI  Y K G S+    +F  +  RN+
Sbjct: 369 LPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 428

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W A+I+    N+L  E ++  ++M      PN++T+ + + AC+ L  L  G++IH +
Sbjct: 429 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 488

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             ++ L SDL + ++L+DMY+KCG +  A  +F  + + D VS  ++++G+++     ++
Sbjct: 489 GVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRK-DEVSYNILIIGYSETDDCLQS 547

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G + D      V+       +L  GK++H + +++   S+ FV+N L++ 
Sbjct: 548 LNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDF 607

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG ++ + ++F+++  ++  SWN+MI  +   G    A+ ++E M+ + V+   V++
Sbjct: 608 YTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSY 667

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSH GLV +G ++   M    R+ P   HY C+VD++GRAG + EA   I+++P
Sbjct: 668 IAVLSACSHGGLVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLP 726

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           + PD  +W ALLGAC I+G+ E+G+ AAE LF  +P     YIL++NIY+ +GRW E  K
Sbjct: 727 IAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANK 786

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
             + MK  G  K  G SW++I  QVH+FV ++++
Sbjct: 787 IRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERV 820



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 12/439 (2%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDD--MPMRDTVSWNTMVSG--FLRNGEFDMGF 140
           +P +  +  SL+  Y K     +   LF+      R    WNT++       NG FD GF
Sbjct: 86  LPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTLIRAHSIAWNGTFD-GF 144

Query: 141 GFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200
             + R +  G  QLD  +F  +L  C  S        +H +V+  G++ +V VGN L+  
Sbjct: 145 ETYNRMVRRGV-QLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLML 203

Query: 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLT 259
           Y  CG  +  R++F EM  R+V++W  +I  L  N  Y E    +  M L  +I PN ++
Sbjct: 204 YGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVS 263

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
            +S +   + L+     R+IH    K+ L S +   +AL+D Y KCGSV+  WQ+F    
Sbjct: 264 VISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETV 323

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + VS   I+ G A  G   +A+  F  M+ AG + +   +S++L V         GK+
Sbjct: 324 EKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKE 383

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IH   ++    ++ F+ N LI+MY+K G   ++  +F  +  RN VSWN+MIA +A +  
Sbjct: 384 IHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRL 443

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+    +M+  G  P  VTF ++L AC+ +G +  G E + +M    RI   ++ + 
Sbjct: 444 PLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKE-IHAMGV--RIGLTSDLFV 500

Query: 500 --CVVDMVGRAGLLIEARS 516
              ++DM  + G L  AR+
Sbjct: 501 SNSLIDMYAKCGCLHSARN 519



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 11/208 (5%)

Query: 267 CSGLQALCEGRQIH--GILWKLALQS-DLCIESALMDMYSKC---GSVEDAW-QIFEFAE 319
           CS +Q+L + +Q+H  GIL     +S  LC  ++L+  Y+K    GS    + Q F+   
Sbjct: 64  CSKVQSLLQTKQVHALGILNGFLPRSVSLC--ASLILNYAKFQHPGSFCSLFNQTFQNCR 121

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
                +  +     A NG   +  + + +MV+ G+++D +    VL +      +  G +
Sbjct: 122 TAFLWNTLIRAHSIAWNG-TFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGME 180

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H ++ K  F ++ +V N L+ +Y  CG L D+ ++F  M  R+ VSWN++I   + +G+
Sbjct: 181 VHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGD 240

Query: 440 GFKALELYEEMKLEGV-EPTDVTFLSLL 466
             +A   Y  M L  V +P  V+ +SLL
Sbjct: 241 YTEARNYYFWMILRSVIKPNLVSVISLL 268



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 10/176 (5%)

Query: 373 SLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNS 429
           SL   KQ+H+L I + F      +   LI  Y+K         +F++     R +  WN+
Sbjct: 69  SLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNT 128

Query: 430 MIAAFARHGNG-FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488
           +I A +   NG F   E Y  M   GV+  D TF  +L  CS    + KGME       V
Sbjct: 129 LIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEV---HGVV 185

Query: 489 HRISPRAEHYA--CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            ++    + Y    ++ + G  G L +AR   + MP + DV+ W  ++G  S++GD
Sbjct: 186 FKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPER-DVVSWNTIIGLLSVNGD 240


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 199/617 (32%), Positives = 323/617 (52%), Gaps = 44/617 (7%)

Query: 66  LHASFIKTFEPFDNQNVYNVPNATVIWNSL-LSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           LHA  ++T   FD       P+AT ++ +  LS     D    A K+FD +P  +  +WN
Sbjct: 49  LHAHMLRTGLFFDP------PSATKLFTACALSSPSSLDY---ACKVFDQIPRPNLYTWN 99

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           T++  F  + +   G   F + L       +  +F  ++ A       L  + IH +V  
Sbjct: 100 TLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMK 159

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
             +  ++ + N+LI  Y   G   S   VF ++  +++++W ++ISG VQ    EE L+L
Sbjct: 160 ASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQL 219

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F +M +    PN +T +  + AC+    L  GR     + +  +  +L + +A++DMY K
Sbjct: 220 FKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVK 279

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFA------------------------------ 334
           CGS+EDA ++F+  EE D VS T ++ G+A                              
Sbjct: 280 CGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSY 339

Query: 335 -QNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            QNG  +EA+ +F + ++      PN V+  + L       ++ LG  IH  I K     
Sbjct: 340 QQNGKPKEALAIF-RELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKL 398

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           N  +   LI+MYSKCG LE +++VF  +  R+   W++MIA  A HG+G  A++L+ +M+
Sbjct: 399 NFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQ 458

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
              V+P  VTF +LL ACSH GLV++G  F   M  V+ + P ++HYAC+VD++GRAG L
Sbjct: 459 ETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCL 518

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   IE+MP+ P   VW ALLGAC I+G+ E+ + A  +L     ++   Y+L++NIY
Sbjct: 519 EEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLLSNIY 578

Query: 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
           + +G+W   ++  + MK  G++KE G S IE+   +H F+V D  HP +  I+  L E++
Sbjct: 579 AKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIV 638

Query: 632 RLMIDEGYVPNKRFILH 648
             +   GYV ++  +L 
Sbjct: 639 ARIKSTGYVSDESHLLQ 655


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 174/537 (32%), Positives = 288/537 (53%), Gaps = 4/537 (0%)

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           +F+ +P   T + N+++ G+           F++  +  G    D+ +F  +  +C    
Sbjct: 96  VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGL-DPDRFTFPSLFKSCG--- 151

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           +    K +HC     G+  +  + N L+  Y  CG   S RKVF +M  ++V++W  +I 
Sbjct: 152 VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIG 211

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
              Q  L  E +KLF +M +  + PN +T ++ + AC+  + L   +Q+H  + +  +  
Sbjct: 212 AYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGF 271

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350
              + SALMD+Y KCG    A  +F    E +     +++ G  ++   EEA+ LF +M 
Sbjct: 272 HTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQ 331

Query: 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
            +G++ D   ++++L       +L LGK +H  I K     +  +   L++MY+KCG +E
Sbjct: 332 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 391

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
            +++VF  M  ++ ++W ++I   A  G G KALEL+ EM++  V+P  +TF+ +L ACS
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLVN+G+ +  SM   + I P  EHY C+VDM+GRAG + EA   I+ MP+ PD  V 
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVL 511

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
             LL AC IHG+  + + AA++L    P +   Y+L++NIYS    W+   K  + M E 
Sbjct: 512 VGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVER 571

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            + K  G S IE+   VH FV  D  HPQ+  I+  L +++R +   GYVP+K  +L
Sbjct: 572 NIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVL 628



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 159/288 (55%), Gaps = 8/288 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           I N+L++ Y  C  + +A K+FD M  +  VSW TM+  +    ++D+     K  R +E
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY---AQWDLPHEAIKLFRRME 230

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +   + ++ +   +L+AC RS     +K +H  +   G      + +AL+  Y KCG   
Sbjct: 231 IASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYP 290

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             R +F +M  +N+  W  +I+G V++  YEE L LF +M L  +  + +T  S ++AC+
Sbjct: 291 LARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACT 350

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L AL  G+ +H  + K  ++ D+ + +AL+DMY+KCGS+E A ++F+   E D ++ T 
Sbjct: 351 HLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTA 410

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
           ++VG A  G   +A++LF +M  +  E+ P+ ++ V GV    +  GL
Sbjct: 411 LIVGLAMCGQGLKALELFHEMQMS--EVKPDAITFV-GVLAACSHAGL 455



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 2/229 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           TV+ ++L+  Y KC     A  LF+ MP ++   WN M++G + + +++     F   ++
Sbjct: 273 TVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNE-MQ 331

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           L   + D+ +   +L AC       + K +H  +     E +V +G AL+  Y KCGS  
Sbjct: 332 LSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIE 391

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S  +VF EM  ++V+TWTA+I GL       + L+LF +M +  + P+++T++  + ACS
Sbjct: 392 SAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS 451

Query: 269 GLQALCEG-RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
               + EG    + +  K  +Q  +     ++DM  + G + +A  + +
Sbjct: 452 HAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 500



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 7/167 (4%)

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS--KCGDLEDSIKVFSRMAPRNSVSWNS 429
           T++   KQIH+ ++++    +PF  + ++   +    G L  +  VF+++    + + NS
Sbjct: 51  TTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNS 110

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           +I  +       +A+  Y+ M L+G++P   TF SL  +C   G++ +G +     T++ 
Sbjct: 111 IIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLG 167

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
             S  A     +++M    G L+ AR   ++M V   V+ W  ++GA
Sbjct: 168 FAS-DAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKSVVSWATMIGA 212


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 304/569 (53%), Gaps = 58/569 (10%)

Query: 77  FD-NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           FD N  + NV    V W +L+S Y++ +++  A +LFD MP+++ +SWNTM+ G+ R G 
Sbjct: 120 FDRNDAIKNV----VTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            D     F++  E      +    T+I +   R  +    ++ + +      E +V    
Sbjct: 176 IDQALDLFEKMPERNVVSWN----TVITAFMQRRRVDEAQELFNRMP-----ERDVISWT 226

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
            ++    K G     R +F +M VRNV++W  +I G  QN   +E  KLF +M      P
Sbjct: 227 TMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQM------P 280

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
                                            + +L   + ++  + + G +E A   F
Sbjct: 281 ---------------------------------ERELSSWNTMITGFIQNGKLERAVDFF 307

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTS 373
                 + V+ T ++ G  Q+G  EEA+++F +M +A   + PN  +  +VLG      +
Sbjct: 308 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEM-QAANNVKPNEGTFVSVLGACSKLAA 366

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSWNSMI 431
           L  G+QIH +I K+ +     V + LINMYSKCG+LE + K+F    +  R+ VSWN MI
Sbjct: 367 LCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMI 426

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           AA+A HG+G KA+ L++EM+  G  P +VT+++LL ACSH GLV++G++  +++     I
Sbjct: 427 AAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSI 486

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
             R +H+ C+VD+ GRAG L EA  FI+ + VKP   VW ALL  C++HG  ++GK  AE
Sbjct: 487 KLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAE 546

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
           KL   +P++   Y++++NIY+ +G+W+E A    +MK+ G+ K+ G SWIE+   VH FV
Sbjct: 547 KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFV 606

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           V D  H + + I+ +L +L   M   G+ 
Sbjct: 607 VGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 233/527 (44%), Gaps = 126/527 (23%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           L+S F  C   V P I+  ++D  S+ S +   N+     L++   KEG   +G +    
Sbjct: 40  LSSQFSTCQ--VVPKISSPVRD-FSANSNVARSNW-----LITQLGKEGK--IGEAR--- 86

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC-------------DQMRNAV------- 109
             + FE   +++V       V W ++++ Y+KC             D ++N V       
Sbjct: 87  --QVFEEMPDRDV-------VSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVS 137

Query: 110 ------------KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE--------- 148
                       +LFD MP+++ +SWNTM+ G+ R G  D     F++  E         
Sbjct: 138 GYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTV 197

Query: 149 -LGFYQ---LDQA-------------SFTIILSACDRS----------ELSLVSKMIHCL 181
              F Q   +D+A             S+T +++   ++          +   V  ++   
Sbjct: 198 ITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWN 257

Query: 182 VYLCGY-----------------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
             + GY                 E E++  N +IT + + G        F +M  +NV+T
Sbjct: 258 TMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVT 317

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           WTAVISG VQ+   EE LK+F +M     + PN  T++S + ACS L ALCEG+QIH I+
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQII 377

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--ELDGVSMTVILVGFAQNGFEEE 341
            K   Q    + SAL++MYSKCG +E A +IF+       D VS   ++  +A +G   +
Sbjct: 378 SKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHK 437

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGKQI---HSLIIKSD-FTSNP 393
           A+ LF +M   G   D     A+L        VD  L L + +    S+ ++ D FT   
Sbjct: 438 AISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTC-- 495

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
                L++++ + G L+++      +  + S S W +++A    HG+
Sbjct: 496 -----LVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 179/384 (46%), Gaps = 49/384 (12%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V   N LIT   K G     R+VF EM  R+V++WTAVI+G ++  + EE   LF +   
Sbjct: 66  VARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND- 124

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
                N +T+ + V        + E R+    L+      ++   + +++ Y++ G ++ 
Sbjct: 125 --AIKNVVTWTALVSGYVRWNRIEEARR----LFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +FE   E + VS   ++  F Q    +EA +LF +M +  +     MV+ +     +
Sbjct: 179 ALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRI 238

Query: 371 DTSLGLGKQI--------HSLIIKSDFTSNPFVN-----------------NGLINMYSK 405
           D +  L  ++        +++II   +  N  ++                 N +I  + +
Sbjct: 239 DDARLLFDKMPVRNVVSWNTMII--GYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQ 296

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTDVTFLS 464
            G LE ++  F +M+ +N V+W ++I+   + G   +AL+++ EM+    V+P + TF+S
Sbjct: 297 NGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVS 356

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPR------AEHYACVVDMVGRAGLLIEARSFI 518
           +L ACS +  + +G        ++H+I  +      A+  + +++M  + G L  AR   
Sbjct: 357 VLGACSKLAALCEGQ-------QIHQIISKTVYQEVADVVSALINMYSKCGELELARKIF 409

Query: 519 ERMPV-KPDVLVWQALLGACSIHG 541
           +   +   DV+ W  ++ A + HG
Sbjct: 410 DDGSIGHRDVVSWNGMIAAYAHHG 433



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 48/246 (19%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            S++   + L+    K G + +A Q+FE   + D VS T ++ G+ + G  EEA  LF  
Sbjct: 63  NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF-- 120

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
                                                ++D   N      L++ Y +   
Sbjct: 121 ------------------------------------DRNDAIKNVVTWTALVSGYVRWNR 144

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +E++ ++F  M  +N +SWN+MI  +AR G   +AL+L+E+M    V    V++ +++ A
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNV----VSWNTVITA 200

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                 V++  E    M E   IS     +  +V  + + G + +AR   ++MPV+ +V+
Sbjct: 201 FMQRRRVDEAQELFNRMPERDVIS-----WTTMVAGLSKNGRIDDARLLFDKMPVR-NVV 254

Query: 529 VWQALL 534
            W  ++
Sbjct: 255 SWNTMI 260


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 300/549 (54%), Gaps = 9/549 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLE 148
           + NSL+S Y +C  M  A ++FD    RD VSWN++VSG+LR G  +     F   R   
Sbjct: 151 VSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCA 210

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +G       S     S  D S +  +++ +H  V   G + ++ + +A++  Y K G+ S
Sbjct: 211 MGLNSFALGSVIKCCSGGDGS-VRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALS 269

Query: 209 SGRKVFGEMRVRNVITWTAVISGL------VQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
               +F  +   NV+ + A+I+GL      V  ++  E L L+ ++    + P   T+ S
Sbjct: 270 EAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSS 329

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC+    +  G+QIHG + K   Q D  I SAL+D+Y     +ED ++ F    + D
Sbjct: 330 VIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQD 389

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
            V+ T ++ G  QN   E A+ LF +++  G++ DP  +S+V+        +  G+Q+  
Sbjct: 390 VVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQC 449

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
              KS F     + N  I+MY++ G++E +I+ F  M   + VSW+++I++ A+HG   +
Sbjct: 450 FATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQ 509

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           AL+ + EM    V P ++TFL +L ACSH GLV++G+ + + M   + + P  +H  CVV
Sbjct: 510 ALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVV 569

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562
           D++GRAG L +A +FI       + +VWQ+LLG+C IH D E G+  A+++   QP S  
Sbjct: 570 DLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSG 629

Query: 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622
            Y+ + N+Y  +G     +K    MKE GV KE G+SWIE+   +HSFV  DK HP+ + 
Sbjct: 630 CYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNA 689

Query: 623 IHGVLAELL 631
           I+  LAE+L
Sbjct: 690 IYTKLAEML 698



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 229/461 (49%), Gaps = 16/461 (3%)

Query: 93  NSLLSFY--LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           N+LL+ Y  L       A +L D+MP R+ VS+N ++  + R G+ +     F  +    
Sbjct: 49  NTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAA 108

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D+ ++   L+AC R+      K++H L  L G  E V V N+L++ Y +CG     
Sbjct: 109 EVKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEA 168

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+VF     R+ ++W +++SG ++   +EE L++F  M    +  NS    S +  CSG 
Sbjct: 169 RRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGG 228

Query: 271 QALCEG--RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
                G    +HG + K  L +DL + SA++DMY+K G++ +A  +F+   + + V    
Sbjct: 229 DGSVRGIAEAVHGCVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNA 288

Query: 329 ILVGFAQNGFE------EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHS 382
           ++ G  ++          EA+ L+ ++   G+E      S+V+    +   +  GKQIH 
Sbjct: 289 MIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHG 348

Query: 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442
            ++K  F  + F+ + LI++Y     +ED  + F  +  ++ V+W +MI+   ++    +
Sbjct: 349 QVLKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFER 408

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEVHRISPRAEHYAC 500
           AL L+ E+   G++P   T  S+++AC+ + +V  G  M+   + +   R +      +C
Sbjct: 409 ALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGN--SC 466

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            + M  R+G +  A    + M    DV+ W A++ + + HG
Sbjct: 467 -IHMYARSGNVEAAIQRFQEME-SHDVVSWSAIISSHAQHG 505


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 174/514 (33%), Positives = 286/514 (55%), Gaps = 23/514 (4%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           ++  IL+ C         + +H  +    Y   V +   LI  Y KC S      VF EM
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLF---VKMHLGLI------------------NPN 256
             RNV++WTA+IS   Q     + L LF   VK+ L  +                   PN
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPN 364

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T+ + + +C+       GRQIH ++ KL  +  + + S+L+DMY+K G + +A  +FE
Sbjct: 365 EFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFE 424

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
              E D VS T I+ G+AQ G +EEA++LF ++   G++ +    + VL       +L L
Sbjct: 425 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDL 484

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GKQ+H+ +++S+  S   + N LI+MYSKCG+L  S ++F  M  R  +SWN+M+  +++
Sbjct: 485 GKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSK 544

Query: 437 HGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPR 494
           HG G + L+L+  M+ E  V+P  VT L++L  CSH GL +KG+     M+     + P+
Sbjct: 545 HGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPK 604

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
            EHY CVVD++GR+G + EA  FI++MP +P   +W +LLGAC +H + ++G++A ++L 
Sbjct: 605 MEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLL 664

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
             +P +   Y++++N+Y+ +GRW++ +     M +  V KE G S IE+++ +H+F   D
Sbjct: 665 EIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASD 724

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + HP+ + I   + EL     + GYVP+   +LH
Sbjct: 725 RSHPRREEICMKVKELSTSFKEVGYVPDLSCVLH 758



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 232/471 (49%), Gaps = 53/471 (11%)

Query: 3   SKWVFLKLNSNFPFCSSLVSPFITKI-IQDPTSSTS----KLVLDNYVDISRLLSISAKE 57
           SK +FL  +  FP  S  +S F T I +Q P    +     +  +NY   + +L+    +
Sbjct: 201 SKSMFLTRHV-FPSNSRTLSTFTTHIHLQQPLLQMALHGFNMKFENY---NAILNECVNK 256

Query: 58  GHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
             F  G  +HA  IKT + P           +  +   L+  Y KCD + +A  +FD+MP
Sbjct: 257 RAFREGQRVHAHMIKTRYLP-----------SVFLRTRLIVLYTKCDSLGDAHNVFDEMP 305

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL---GFYQLDQA---------------- 157
            R+ VSW  M+S + + G        F   +++   G Y +D+                 
Sbjct: 306 ERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNE 365

Query: 158 -SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
            +F  +L++C  S   ++ + IH L+    YE+ V VG++L+  Y K G     R VF  
Sbjct: 366 FTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFEC 425

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  R+V++ TA+ISG  Q  L EE L+LF ++    +  N +TY   + A SGL AL  G
Sbjct: 426 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLG 485

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
           +Q+H  + +  + S + ++++L+DMYSKCG++  + +IF+   E   +S   +LVG++++
Sbjct: 486 KQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKH 545

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS----- 391
           G   E ++LF  M +   ++ P+ V+ +L V    +  GL  +   L I +D +S     
Sbjct: 546 GEGREVLKLFTLM-REETKVKPDSVT-ILAVLSGCSHGGLEDK--GLNIFNDMSSGKIEV 601

Query: 392 NPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
            P + +   ++++  + G +E++ +   +M    + + W S++ A   H N
Sbjct: 602 EPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSN 652


>gi|414888053|tpg|DAA64067.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 754

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/594 (31%), Positives = 305/594 (51%), Gaps = 22/594 (3%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  + +  +  LS++A  G   L   LHA   +            +     + N+L++ Y
Sbjct: 153 VRPDAITFTVTLSLAAGRGEGRLVRQLHALVSRA----------GIAADVFVGNALVTAY 202

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELGFYQLDQAS 158
            +   +  A K+F++MP RD VSWN +V G  ++GE        F R L+ G  + D+ S
Sbjct: 203 ARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRMLKHGGVRPDRIS 262

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
              ++SAC       + + IH      G E  V++ N L+  Y+KCG+    R++F  M 
Sbjct: 263 VCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIANVLVAMYYKCGTPGCARRLFEFMG 322

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            R+V++WT V+S        E+ + LF  M    + PN +T+++ + A  G     EG+ 
Sbjct: 323 ERDVVSWTTVMS-----MDREDAVSLFNGMMRDGVAPNEVTFVAILSAMPGHCPAREGQM 377

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           +H +  K  L       ++ + MY+K   ++DA  IF      + ++   ++ G+AQN  
Sbjct: 378 VHAVCIKTGLSDKPAAANSFITMYAKLRRMDDAKMIFGLMPHPEVIAWNALISGYAQNEM 437

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNN 397
            ++A++ F+ MVK     +    S +  V  V+T S+  G+  H   +K    ++ +V+ 
Sbjct: 438 CQDALEAFLSMVKITKPSETTFASILSAVTAVETVSMAYGQMYHCQTLKLGLGASEYVSG 497

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI++Y+K G LE+S K F     R+ ++W ++I+A ++HGN    + L+ +M   GV P
Sbjct: 498 ALIDLYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDGVVSLFNDMARSGVTP 557

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             V  LS+L AC + G  + G E  +SM   H      EHYACVVDM+GRAG L EA   
Sbjct: 558 DGVVLLSVLTACRYSGFASLGREIFESMATKHGAELWPEHYACVVDMLGRAGRLEEAEEL 617

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           + +MP  P V   Q+LLGAC IHG++++G+  A  L   +P     Y+L++NIY+  G W
Sbjct: 618 MLQMPSGPSVSAMQSLLGACRIHGNTDVGERVAGVLLETEPTESGAYVLLSNIYAEKGDW 677

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEK-----QVHSFVVDDKMHPQADTIHGV 626
              A+  ++M+ MGV KE G SW++         +H F  DD  HPQ + I+ V
Sbjct: 678 GAVARVRRKMRGMGVKKEVGFSWVDAGGANDSLHLHKFSSDDTTHPQREEIYRV 731



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 151/491 (30%), Positives = 252/491 (51%), Gaps = 41/491 (8%)

Query: 64  PSLHA----SFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           P+LHA    S +  F P              + NSL + Y K +    A ++F   P RD
Sbjct: 78  PALHALAVISGLAAFAP--------------VTNSLAARYAKGNSFAAAARVFAAAPSRD 123

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS-ACDRSELSLVSKMI 178
           T S+NT++S      + D    F  R L  G  + D  +FT+ LS A  R E  LV + +
Sbjct: 124 TSSYNTILSA---TPDPDDALAFAARMLRAGDVRPDAITFTVTLSLAAGRGEGRLV-RQL 179

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN-QL 237
           H LV   G   +V VGNAL+T+Y +  S  + RKVF EM  R++++W A++ GL Q+ + 
Sbjct: 180 HALVSRAGIAADVFVGNALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGEC 239

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
             E +++F++M   G + P+ ++  S + AC G   L  GRQIHG   KL ++  + I +
Sbjct: 240 PAEVIRVFLRMLKHGGVRPDRISVCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIAN 299

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
            L+ MY KCG+   A ++FEF  E D VS T ++     +   E+A+ LF  M++ G+  
Sbjct: 300 VLVAMYYKCGTPGCARRLFEFMGERDVVSWTTVM-----SMDREDAVSLFNGMMRDGVA- 353

Query: 357 DPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            PN V+  A+L           G+ +H++ IK+  +  P   N  I MY+K   ++D+  
Sbjct: 354 -PNEVTFVAILSAMPGHCPAREGQMVHAVCIKTGLSDKPAAANSFITMYAKLRRMDDAKM 412

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M     ++WN++I+ +A++     ALE +  M ++  +P++ TF S+L A + V  
Sbjct: 413 IFGLMPHPEVIAWNALISGYAQNEMCQDALEAFLSM-VKITKPSETTFASILSAVTAVET 471

Query: 475 VNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEA-RSFIERMPVKPDVLVWQ 531
           V+     +    +  ++   A  Y    ++D+  + G L E+ ++F E   V   ++ W 
Sbjct: 472 VSMAYGQMYH-CQTLKLGLGASEYVSGALIDLYAKRGSLEESWKAFGET--VHRSLIAWT 528

Query: 532 ALLGACSIHGD 542
           A++ A S HG+
Sbjct: 529 AIISANSKHGN 539



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 183/380 (48%), Gaps = 16/380 (4%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H L  + G      V N+L   Y K  S ++  +VF     R+  ++  ++S       
Sbjct: 80  LHALAVISGLAAFAPVTNSLAARYAKGNSFAAAARVFAAAPSRDTSSYNTILSATPDP-- 137

Query: 238 YEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            ++ L    +M   G + P+++T+  ++   +G       RQ+H ++ +  + +D+ + +
Sbjct: 138 -DDALAFAARMLRAGDVRPDAITFTVTLSLAAGRGEGRLVRQLHALVSRAGIAADVFVGN 196

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG-FEEEAMQLFVKMVK-AGI 354
           AL+  Y++  S++ A ++FE     D VS   ++ G AQ+G    E +++F++M+K  G+
Sbjct: 197 ALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRMLKHGGV 256

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             D   V +V+   G +  L LG+QIH   +K     +  + N L+ MY KCG    + +
Sbjct: 257 RPDRISVCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIANVLVAMYYKCGTPGCARR 316

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  R+ VSW ++++      +   A+ L+  M  +GV P +VTF+++L A      
Sbjct: 317 LFEFMGERDVVSWTTVMSM-----DREDAVSLFNGMMRDGVAPNEVTFVAILSAMPGHCP 371

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
             +G + + ++     +S +       + M  +   + +A+     MP  P+V+ W AL+
Sbjct: 372 AREG-QMVHAVCIKTGLSDKPAAANSFITMYAKLRRMDDAKMIFGLMP-HPEVIAWNALI 429

Query: 535 GACSIHGDSEMGKYAAEKLF 554
              S +  +EM + A E   
Sbjct: 430 ---SGYAQNEMCQDALEAFL 446



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 24/202 (11%)

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
           ++AG+ + P   SA +   G D    L    H+L + S   +   V N L   Y+K    
Sbjct: 54  LQAGLPVSPTAFSAAVARSGPDALPAL----HALAVISGLAAFAPVTNSLAARYAKGNSF 109

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHA 468
             + +VF+    R++ S+N++++A     +   AL     M   G V P  +TF   L  
Sbjct: 110 AAAARVFAAAPSRDTSSYNTILSATPDPDD---ALAFAARMLRAGDVRPDAITFTVTLSL 166

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA------CVVDMVGRAGLLIEARSFIERMP 522
            +  G   +G    + + ++H +  RA   A       +V    R   L  AR   E MP
Sbjct: 167 AAGRG---EG----RLVRQLHALVSRAGIAADVFVGNALVTAYARGASLDAARKVFEEMP 219

Query: 523 VKPDVLVWQALLGACSIHGDSE 544
            + D++ W AL+  C +  D E
Sbjct: 220 AR-DLVSWNALV--CGLAQDGE 238


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 201/619 (32%), Positives = 324/619 (52%), Gaps = 42/619 (6%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           S     LDN++ +  LL   A+     LG  LH         F  +N +   +   + N+
Sbjct: 80  SNDAAALDNFI-LPSLLKACAQASSGDLGRELHG--------FAQKNGF--ASDVFVCNA 128

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L++ Y KC  + +A  +FD MP RD VSW TM+  ++R+  F       +   E+ F  +
Sbjct: 129 LMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVR---EMQFVGV 185

Query: 155 DQASFTII-LSACDRSELSLVS-KMIHC-LVYLCGYEE-EVTVGNALITSYFKCGSSSSG 210
             +   +I L A   + L + S + +H  +V   G E+ EV++  ALI  Y K G  +S 
Sbjct: 186 KLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASA 245

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           +++F  +  R+V++WT +I+G +++   +EG K F +M    + PN +T LS +  C  +
Sbjct: 246 QRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFV 305

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
             L  G+  H  L +      L + +AL+DMY KCG V  A  +F   ++ D    +V++
Sbjct: 306 GTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLI 365

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSD 388
             +A     ++   LFV+M+    ++ PN V+ V  L +     +L LGK  H+ I +  
Sbjct: 366 SAYAHVSCMDQVFNLFVEMLNN--DVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHG 423

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              +  +   LINMY+KCGD+  +  +F+    R+   WN+M+A F+ HG G +ALEL+ 
Sbjct: 424 LEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFS 483

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+  GVEP D+TF+S+ HACSH GL+                    EHY C+VD++GRA
Sbjct: 484 EMESHGVEPNDITFVSIFHACSHSGLM--------------------EHYGCLVDLLGRA 523

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA + IE MP++P+ ++W ALL AC +H +  +G+ AA K+    P +    +L +
Sbjct: 524 GHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKS 583

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ + RW +     + M   G+ KE G+SWIE+   VH F   DK   Q   ++ ++ 
Sbjct: 584 NIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVT 643

Query: 629 ELLRLMIDEGYVPNKRFIL 647
           E+   + + GY PN   +L
Sbjct: 644 EMCIKLRESGYTPNTAAVL 662


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/578 (31%), Positives = 315/578 (54%), Gaps = 16/578 (2%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L   A+ G    G + HA+ IK     D   VY         NSL++ Y K   + +A 
Sbjct: 126 VLKCCARAGALGEGRAAHAAVIKLGLGAD---VYTA-------NSLVALYAKLGLVGDAE 175

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR---SLELGFYQLDQASFTIILSAC 166
           ++FD MP RD VSWNTMV G++ NG   +    F+    +L++G    D       L+AC
Sbjct: 176 RVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGH---DSVGVIAALAAC 232

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
                  + + IH      G E++V VG +L+  Y KCG+      VF +M +R V+TW 
Sbjct: 233 CLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWN 292

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I G   N+   +    F++M +       +T ++ + AC+  ++   GR +H  + + 
Sbjct: 293 CMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRR 352

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
                + +E+AL++MY K G VE + +IF    +   VS   ++  +      +EA+ LF
Sbjct: 353 HFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALF 412

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           ++++   +  D   ++ V+  F +  S+   KQ+HS I+K  +  +  + N +++MY++C
Sbjct: 413 LELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARC 472

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G++  S ++F +M  ++ +SWN++I  +A HG G  ALE+++EMK  G+EP + TF+S+L
Sbjct: 473 GNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVL 532

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACS  GL  +G +   SM + + + P+ EHY C+ D++GRAG L E   FIE MP+ P 
Sbjct: 533 TACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPT 592

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
             +W +LL A     D ++ +YAAE++F  + ++   Y++++++Y+ +GRW++  +    
Sbjct: 593 SRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSL 652

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           MKE G+ +    S +E+  +  SFV  D  HPQ++ IH
Sbjct: 653 MKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIH 690



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 214/459 (46%), Gaps = 7/459 (1%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  ++   +M  A   F  +        N M+ GF            ++  L+ G  +
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAG-AR 117

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D+ +F ++L  C R+      +  H  V   G   +V   N+L+  Y K G      +V
Sbjct: 118 PDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERV 177

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQA 272
           F  M  R++++W  ++ G V N +    L  F +M+  L +  +S+  ++++ AC    A
Sbjct: 178 FDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESA 237

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR+IHG   +  L+ D+ + ++L+DMY KCG+V  A  +F        V+   ++ G
Sbjct: 238 LALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGG 297

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A N    +A   F++M   G +++      +L       S   G+ +H+ +++  F  +
Sbjct: 298 YALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPH 357

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             +   L+ MY K G +E S K+F ++  +  VSWN+MIAA+       +A+ L+ E+  
Sbjct: 358 VVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLN 417

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           + + P   T  +++ A   +G + +  +    + ++          A V+ M  R G ++
Sbjct: 418 QPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNA-VMHMYARCGNIV 476

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            +R   ++MP K DV+ W  ++   +IHG    GK A E
Sbjct: 477 ASREIFDKMPGK-DVISWNTIIIGYAIHGQ---GKIALE 511


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 201/672 (29%), Positives = 336/672 (50%), Gaps = 59/672 (8%)

Query: 8   LKLNSNFPFC---SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGP 64
           LK      FC    + +S  I + ++ PT  T   ++D  + + +L              
Sbjct: 7   LKPAKAVSFCIHTETQISKTILQELKSPTHQTLHYLIDQCISLKQL-------------K 53

Query: 65  SLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
            +HA  I          ++ +    +    L+S  ++   +R A KLFD +P  +   +N
Sbjct: 54  HVHAQII----------LHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFN 103

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
            ++ G+  + +       ++R +  G    +Q +   +L AC       +   +H   + 
Sbjct: 104 HLIKGYSNSSDPIKSLLLYRRMVCDGILP-NQFTIPFVLKACAAKSCYWLGVCVHAQSFK 162

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
            G      V NA++  Y  CG  +S R+VF ++  R +++W ++I+G  +    EE + +
Sbjct: 163 LGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLM 222

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F +M    + P+  T +  +   +       GR +H  +    ++ D  + +ALMDMY+K
Sbjct: 223 FREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAK 282

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFA------------------------------ 334
           CG+++ A  +F+   + D VS T ++  +A                              
Sbjct: 283 CGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCH 342

Query: 335 -QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            Q G   EA+ LF +M  +G+  +   + A+L        L LGKQ HS I  ++ T + 
Sbjct: 343 VQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSA 402

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            + N +I+MY+KCG L+ ++ VF  M  +N+VSWN +I A A HG G +A+E++E+M+  
Sbjct: 403 TLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQAS 462

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           GV P ++TF  LL ACSH GLV+ G  + + M     ISP  EHYAC+VD++GR GLL E
Sbjct: 463 GVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGE 522

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A S I++MPVKPDV+VW ALLGAC  +G+  +GK   ++L      +   Y+L++N+YS 
Sbjct: 523 AISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSE 582

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
           S RW +     K + + G+ K   IS+IEI+   + F+VDDK H  + +I+ +L +L+  
Sbjct: 583 SQRWDDMKNIWKILDQNGIKKCRAISFIEIDGCCYQFMVDDKRHGASTSIYSMLGQLMDH 642

Query: 634 MIDEGYVPNKRF 645
           +   GY P K  
Sbjct: 643 LKSAGY-PCKHL 653


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 304/555 (54%), Gaps = 12/555 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            SL++ Y KC  MR AV +F     RD   +N ++SGF+ NG        ++     G  
Sbjct: 99  TSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSPLDAMDMYREMRAKGIL 157

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +F  +L   D  E+S V K +H L +  G+  +  VG+AL+TSY K  S    +K
Sbjct: 158 P-DKYTFPSLLKGSDAMEVSDVKK-VHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQK 215

Query: 213 VFGEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACSG 269
           VF E+  R+  + W A+++G      +E+ L +F KM      ++ +++T + S    SG
Sbjct: 216 VFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSG 275

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
              L  GR IHG+  K+   S + + +AL+D+Y K   +E+A  IFE  +E D  +   +
Sbjct: 276 --DLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSV 333

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L      G  +  + LF  M+ +GI  D   ++ VL   G   SL  G++IH  +I S  
Sbjct: 334 LCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGL 393

Query: 390 ----TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
               +SN F++N L++MY KCGDL D+  VF  M  ++S SWN MI  +     G  AL+
Sbjct: 394 LNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALD 453

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           ++  M   GV+P ++TF+ LL ACSH G VN+G  FL  M  ++ I P ++HYACV+DM+
Sbjct: 454 MFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDML 513

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           GRA  L EA      MP+  + +VW+++L +C +HG+ ++   A ++L+  +P+    Y+
Sbjct: 514 GRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLAVVAGKRLYELEPEHCGVYV 573

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           LM+N+Y  + +++E       MKE  V K  G SWI ++  VH+F   D+ HP+ ++IHG
Sbjct: 574 LMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCSWIGLQNGVHTFFTGDQTHPEFESIHG 633

Query: 626 VLAELLRLMIDEGYV 640
            L+ L+  M    Y+
Sbjct: 634 WLSLLISHMHGHEYM 648



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 179/377 (47%), Gaps = 16/377 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + ++L++ Y K   + +A K+FD++P R D+V WN +V+G+     F+     F +  E 
Sbjct: 196 VGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREE 255

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G   + + + T +LS+   S      + IH L    G++  + V NALI  Y K      
Sbjct: 256 GV-AMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEE 314

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              +F  M  R++ TW +V+        ++  L LF  M    I P+ +T  + +  C  
Sbjct: 315 ANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGR 374

Query: 270 LQALCEGRQIHGILWKLAL----QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           L +L +GR+IHG +    L     S+  I ++LMDMY KCG + DA  +F+     D  S
Sbjct: 375 LASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSAS 434

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             +++ G+      E A+ +F  M +AG++  P+ ++ V G+    +  G   +  + + 
Sbjct: 435 WNIMINGYGVQSCGELALDMFSCMCRAGVK--PDEITFV-GLLQACSHSGFVNEGRNFLA 491

Query: 386 KSDFTSNPFVNNG----LINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNG 440
           + +   N    +     +I+M  +   LE++  +   M    N V W S++++   HGN 
Sbjct: 492 QMETLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGN- 550

Query: 441 FKALELYEEMKLEGVEP 457
            K L +    +L  +EP
Sbjct: 551 -KDLAVVAGKRLYELEP 566



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 162/344 (47%), Gaps = 26/344 (7%)

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCGSVEDAWQI 314
           N  T ++++  C+  +    G+QIHG + +     D     ++L++MY+KCG +  A  +
Sbjct: 58  NVATSIATLQRCAQRKDSVSGQQIHGFMVRKGFLDDSPRAVTSLVNMYAKCGLMRRAVLV 117

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-S 373
           F  +E  D      ++ GF  NG   +AM ++ +M   GI  D     ++L   G D   
Sbjct: 118 FGGSER-DVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLK--GSDAME 174

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIA 432
           +   K++H+L  K  F S+ +V + L+  YSK   +ED+ KVF  +  R +SV WN+++ 
Sbjct: 175 VSDVKKVHALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 234

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            ++       AL ++ +M+ EGV  +  T  S+L + +  G ++ G         +H ++
Sbjct: 235 GYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNG-------RSIHGLA 287

Query: 493 PRAEHYACVV------DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
            +    + +V      D+ G++  L EA S  E M  + D+  W ++L      GD + G
Sbjct: 288 VKMGFDSGIVVSNALIDLYGKSKWLEEANSIFEAMDER-DLFTWNSVLCVHDYCGDHD-G 345

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
             A  +  L     P    L   + +C      R  ++K+ +E+
Sbjct: 346 TLALFETMLCSGIRPDIVTLTTVLPTCG-----RLASLKQGREI 384



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 118/275 (42%), Gaps = 20/275 (7%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ +LS     G    G S+H   +K    FD+          V+ N+L+  Y K   + 
Sbjct: 264 ITSVLSSFTVSGDLDNGRSIHGLAVKM--GFDS--------GIVVSNALIDLYGKSKWLE 313

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A  +F+ M  RD  +WN+++      G+ D     F+  L  G  + D  + T +L  C
Sbjct: 314 EANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGI-RPDIVTLTTVLPTC 372

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVT----VGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            R       + IH  +   G     +    + N+L+  Y KCG     R VF  MRV++ 
Sbjct: 373 GRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDS 432

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG- 281
            +W  +I+G       E  L +F  M    + P+ +T++  + ACS    + EGR     
Sbjct: 433 ASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQ 492

Query: 282 --ILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
              L+ +   SD    + ++DM  +   +E+A+ +
Sbjct: 493 METLYNILPTSDH--YACVIDMLGRADKLEEAYDL 525


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 171/543 (31%), Positives = 291/543 (53%), Gaps = 14/543 (2%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LH   +K   P            + +   L+  Y KC ++ ++ ++FD++  R+ V 
Sbjct: 157 GRKLHCQIVKVGSP-----------DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVC 205

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W +M+ G+++N     G   F R  E G  + +Q +   +++AC +       K +H  V
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRMRE-GLVEGNQYTLGSLVTACTKLGALHQGKWVHGYV 264

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G++    +   L+  YFKCG       VF E+   ++++WTA+I G  Q     E L
Sbjct: 265 IKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREAL 324

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           KLF       + PN++T  S + AC+   +L  GR +H +  KL    D   E+AL+DMY
Sbjct: 325 KLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFENALVDMY 383

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           +KC  + DA  +FE   + D ++   I+ G+ QNG+  EA++LF +M    +  D   + 
Sbjct: 384 AKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLV 443

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAP 421
           +VL       +  +G  +H   IK+   S   +V   L+N Y+KCGD E +  +F  M  
Sbjct: 444 SVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGE 503

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           +N+++W++MI  +   G+  ++LEL+ +M  E +EP +V F ++L ACSH G++ +G  +
Sbjct: 504 KNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRY 563

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             +M +V+   P  +HYAC+VD++ RAG L EA  FIE++P++PDV +  A L  C +H 
Sbjct: 564 FNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHS 623

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
             ++G+ A  ++    PD    Y+LM+N+Y+  GRW +  + ++ MK+ G+ K  G S +
Sbjct: 624 RFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLV 683

Query: 602 EIE 604
           +IE
Sbjct: 684 DIE 686



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 146/487 (29%), Positives = 239/487 (49%), Gaps = 18/487 (3%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+S Y     +  A  +FD +   D  SW  M+  +  N  +     F+   L     + 
Sbjct: 77  LVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEY 136

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           D   F+I+L AC     +   + +HC +   G  +   +   L+  Y KC      R+VF
Sbjct: 137 DNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVL-TGLVDMYAKCREVEDSRRVF 195

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
            E+  RNV+ WT++I G VQN   +EGL LF +M  GL+  N  T  S V AC+ L AL 
Sbjct: 196 DEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALH 255

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +G+ +HG + K     +  + + L+D+Y KCG + DA+ +F+    +D VS T ++VG+A
Sbjct: 256 QGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYA 315

Query: 335 QNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           Q G+  EA++LF    +   ++ PN V  S+VL       SL +G+ +H L IK      
Sbjct: 316 QRGYPREALKLFTD--ERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDA 373

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            F  N L++MY+KC  + D+  VF  +  ++ ++WNS+I+ + ++G  ++ALEL+++M+ 
Sbjct: 374 TF-ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRS 432

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512
           + V P  +T +S+L AC+ VG    G        +   +S        +++   + G   
Sbjct: 433 DSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAE 492

Query: 513 EARSFIERMPVKPDVLVWQALLGACSIHGDSE-----MGKYAAEKLFLAQPDSPAPYILM 567
            AR   + M  K + + W A++G   I GD        G    EKL       P   I  
Sbjct: 493 SARVIFDEMGEK-NTITWSAMIGGYGIQGDCSRSLELFGDMLKEKL------EPNEVIFT 545

Query: 568 ANIYSCS 574
             + +CS
Sbjct: 546 TILSACS 552



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 200/397 (50%), Gaps = 24/397 (6%)

Query: 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
           + IH L+ + G  E++     L++ Y   G     R +F  +R  ++ +W  +I     N
Sbjct: 56  RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLN 115

Query: 236 QLYEEGLKLF-VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
             Y E ++ +  ++   L   +++ +   + ACS L+   EGR++H  + K+    D  +
Sbjct: 116 DSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVG-SPDSFV 174

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + L+DMY+KC  VED+ ++F+   + + V  T ++VG+ QN   +E + LF +M +  +
Sbjct: 175 LTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLV 234

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           E +   + +++       +L  GK +H  +IKS F  N F+   L+++Y KCGD+ D+  
Sbjct: 235 EGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFS 294

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           VF  ++  + VSW +MI  +A+ G   +AL+L+ + + + + P  VT  S+L AC+  G 
Sbjct: 295 VFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGS 354

Query: 475 VNKGMEFLKSMTEVHRI-----SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           +N G         VH +     S  A     +VDM  +  ++ +AR   E +  K DV+ 
Sbjct: 355 LNMG-------RSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDK-DVIA 406

Query: 530 WQALLGACSIHGDSEMGKYAAEKLFL---AQPDSPAP 563
           W +++   + +G      YA E L L    + DS  P
Sbjct: 407 WNSIISGYTQNG------YAYEALELFDQMRSDSVYP 437



 Score = 42.4 bits (98), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
           I  N   ++LG+    +SL   ++IH+L++    + +      L+++Y   G +E +  +
Sbjct: 37  ISSNPCFSLLGICKTVSSL---RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLM 93

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGL 474
           F R+   +  SW  MI  +  + +  + ++ Y     + +   D V F  +L ACS +  
Sbjct: 94  FDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRE 153

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            ++G +    + +V   SP +     +VDM  +   + ++R   + + +  +V+ W +++
Sbjct: 154 TDEGRKLHCQIVKVG--SPDSFVLTGLVDMYAKCREVEDSRRVFDEI-LDRNVVCWTSMI 210


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 166/473 (35%), Positives = 277/473 (58%), Gaps = 2/473 (0%)

Query: 177  MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
             IH  +   G+E+ + + +AL+  Y KC +    ++VF  M   + ++WT++ISG  +N 
Sbjct: 1337 QIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNG 1396

Query: 237  LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWKLALQSDLCIE 295
              +E +  F +M    I PN +TY+S + AC+GL+ + +    +H  + KL       + 
Sbjct: 1397 RGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVV 1456

Query: 296  SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
            S L+D YSKCG ++ A  +F    E D +    ++ G++QN   EEA++LFV+M   G+ 
Sbjct: 1457 SCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLX 1516

Query: 356  IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
               + ++++L   G  T L  G+Q+HSL+ K    SN FV + L++MYSKCG ++++  V
Sbjct: 1517 PTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCV 1576

Query: 416  FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGL 474
            F +   +N+V W SMI  +A+ G G + L L+E +   EG  P  + F ++L AC+H G 
Sbjct: 1577 FXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHAGF 1636

Query: 475  VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            ++KG+++   M   + + P  + YAC+VD+  R G L +A+  +E  P +P+ ++W + L
Sbjct: 1637 LDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGSFL 1696

Query: 535  GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
             +C ++G++E+G+ AA+KLF  +P S APY+ MA+IY+ +G W E  +  K MK+ G+ K
Sbjct: 1697 SSCKLYGEAELGREAADKLFKMEPCSTAPYVAMASIYAQAGLWSEVVEIRKLMKQKGLRK 1756

Query: 595  ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
              G SW+E++K+VH F V D  HP++  I   L  L   M + GY P + F L
Sbjct: 1757 SAGWSWVEVDKRVHVFXVADASHPRSRDICVELERLNLEMKEVGYTPQQXFEL 1809



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 220/443 (49%), Gaps = 20/443 (4%)

Query: 51   LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
            L+  AK  ++ LG  +HA  I+T   F++    N        ++L+  Y KCD + +A +
Sbjct: 1323 LNSCAKLLNWGLGVQIHARIIQT--GFEDNLFLN--------SALVDLYAKCDAIVDAKR 1372

Query: 111  LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
            +FD M   D VSW +++SGF +NG       FFK  L     + +  ++   +SAC   E
Sbjct: 1373 VFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQI-KPNCVTYVSXISACTGLE 1431

Query: 171  LSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                   ++H  V   G+  +  V + LI  Y KCG       +FG    R+ I + ++I
Sbjct: 1432 TIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMI 1491

Query: 230  SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            SG  QN   EE LKLFV+M    + P   T  S + AC  L  L +GRQ+H ++ K+  +
Sbjct: 1492 SGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSE 1551

Query: 290  SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
            S++ + SAL+DMYSKCGS+++A  +F  A E + V  T ++ G+AQ+G   E + LF ++
Sbjct: 1552 SNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERL 1611

Query: 350  V-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKC 406
            V + G   D    +AVL        L  G    +  ++ D+   P ++    L+++Y + 
Sbjct: 1612 VXEEGFTPDHICFTAVLTACNHAGFLDKGIDYFNQ-MRRDYGLVPDLDQYACLVDLYVRN 1670

Query: 407  GDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLS 464
            G L  + ++        NSV W S +++   +G      E  +  KL  +EP +   +++
Sbjct: 1671 GHLRKAKELMEAXPXEPNSVMWGSFLSSCKLYGEAELGREAAD--KLFKMEPCSTAPYVA 1728

Query: 465  LLHACSHVGLVNKGMEFLKSMTE 487
            +    +  GL ++ +E  K M +
Sbjct: 1729 MASIYAQAGLWSEVVEIRKLMKQ 1751



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 184/340 (54%), Gaps = 11/340 (3%)

Query: 240  EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
            E L+ F +M+     P      +++ +C+ L     G QIH  + +   + +L + SAL+
Sbjct: 1299 EALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 1358

Query: 300  DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
            D+Y+KC ++ DA ++F+  E+ D VS T I+ GF++NG  +EA+  F +M+  G +I PN
Sbjct: 1359 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEML--GSQIKPN 1416

Query: 360  ---MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
                VS +    G++T       +H+ ++K  F    FV + LI+ YSKCG ++ ++ +F
Sbjct: 1417 CVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQAVLLF 1476

Query: 417  SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
                 R+++ +NSMI+ ++++  G +AL+L+ ZM+  G+ PTD T  S+L+AC  + ++ 
Sbjct: 1477 GTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLTILQ 1536

Query: 477  KGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
            +G +     + V ++   +  +  + ++DM  + G + EAR    +  V+ + ++W +++
Sbjct: 1537 QGRQV---HSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQ-AVEKNTVLWTSMI 1592

Query: 535  GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
               +  G    G    E+L   +  +P      A + +C+
Sbjct: 1593 TGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACN 1632



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 97/181 (53%)

Query: 334  AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
            A++    EA++ F +M  +G +    ++   L       + GLG QIH+ II++ F  N 
Sbjct: 1292 AKHANVREALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNL 1351

Query: 394  FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            F+N+ L+++Y+KC  + D+ +VF  M   + VSW S+I+ F+++G G +A+  ++EM   
Sbjct: 1352 FLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGS 1411

Query: 454  GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
             ++P  VT++S + AC+ +  +      L +         +    +C++D   + G + +
Sbjct: 1412 QIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQ 1471

Query: 514  A 514
            A
Sbjct: 1472 A 1472


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 317/574 (55%), Gaps = 13/574 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  LL ISA      +   +H   +K     D+Q            N+L+  Y KC
Sbjct: 111 NLVSVISLLPISAALEDEEMTRRIHCYSVKV--GLDSQ--------VTTCNALVDAYGKC 160

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             ++   ++F++   ++ VSWN++++G    G        F+  ++ G  Q +  + + I
Sbjct: 161 GSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAG-AQPNSVTISSI 219

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L      E     K IH      G E ++ + N+LI  Y K G S+    +F  +  RN+
Sbjct: 220 LPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 279

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++W A+I+    N+L  E ++  ++M      PN++T+ + + AC+ L  L  G++IH +
Sbjct: 280 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 339

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             ++ L SDL + ++L+DMY+KCG +  A  +F  + + D VS  ++++G+++     ++
Sbjct: 340 GVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTSRK-DEVSYNILIIGYSETDDCLQS 398

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + LF +M   G + D      V+       +L  GK++H + +++   S+ FV+N L++ 
Sbjct: 399 LNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDF 458

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462
           Y+KCG ++ + ++F+++  ++  SWN+MI  +   G    A+ ++E M+ + V+   V++
Sbjct: 459 YTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSY 518

Query: 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP 522
           +++L ACSH GLV +G ++   M    R+ P   HY C+VD++GRAG + EA   I+++P
Sbjct: 519 IAVLSACSHGGLVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLP 577

Query: 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582
           + PD  +W ALLGAC I+G+ E+G+ AAE LF  +P     YIL++NIY+ +GRW E  K
Sbjct: 578 IAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANK 637

Query: 583 AIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
             + MK  G  K  G SW++I  QVH+FV ++++
Sbjct: 638 IRELMKSRGAKKNPGCSWVQIYDQVHAFVAEERV 671



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 258/529 (48%), Gaps = 35/529 (6%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y  C  + +A +LFD+MP RD VSWNT++     NG++     ++   +     
Sbjct: 49  NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVI 108

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + +  S   +L      E   +++ IHC     G + +VT  NAL+ +Y KCGS  +  +
Sbjct: 109 KPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQ 168

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E   +N ++W ++I+GL       + L  F  M      PNS+T  S +     L+ 
Sbjct: 169 VFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELEC 228

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
              G++IHG   ++  ++D+ I ++L+DMY+K G   +A  IF   +  + VS   ++  
Sbjct: 229 FKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIAN 288

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A N    EA++  ++M + G   +    + VL        LG GK+IH++ ++   TS+
Sbjct: 289 YALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSD 348

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
            FV+N LI+MY+KCG L  +  VF+  + ++ VS+N +I  ++   +  ++L L+ EM+L
Sbjct: 349 LFVSNSLIDMYAKCGCLHSARNVFN-TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRL 407

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGME-------------------FLKSMTEVHRIS- 492
            G +P  V+F+ ++ AC+++  + +G E                    L   T+  RI  
Sbjct: 408 LGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDI 467

Query: 493 ----------PRAEHYACVVDMVGRAGLLIEARSFIERM---PVKPDVLVWQALLGACSI 539
                          +  ++   G  G L  A S  E M    V+ D++ + A+L ACS 
Sbjct: 468 ACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSH 527

Query: 540 HGDSEMG-KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            G  E G +Y +E L      +   Y  M ++   +G  +E AK I+++
Sbjct: 528 GGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQL 576



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 188/371 (50%), Gaps = 14/371 (3%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           QLD  +F  +L  C  S        +H +V+  G++ +V VGN L+  Y  CG  +  R+
Sbjct: 7   QLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARR 66

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQ 271
           +F EM  R+V++W  +I  L  N  Y E    +  M L  +I PN ++ +S +   + L+
Sbjct: 67  LFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALE 126

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
                R+IH    K+ L S +   +AL+D Y KCGSV+  WQ+F    E + VS   I+ 
Sbjct: 127 DEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIIN 186

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G A  G   +A+  F  M+ AG + +   +S++L V         GK+IH   ++    +
Sbjct: 187 GLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTET 246

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           + F+ N LI+MY+K G   ++  +F  +  RN VSWN+MIA +A +    +A+    +M+
Sbjct: 247 DIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQ 306

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----RISPRAEHYA--CVVDMV 505
             G  P  VTF ++L AC+ +G +  G        E+H    RI   ++ +    ++DM 
Sbjct: 307 ETGECPNAVTFTNVLPACARLGFLGPG-------KEIHAMGVRIGLTSDLFVSNSLIDMY 359

Query: 506 GRAGLLIEARS 516
            + G L  AR+
Sbjct: 360 AKCGCLHSARN 370



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           MV+ G+++D +    VL +      +  G ++H ++ K  F ++ +V N L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTDVTFLSLL 466
           L D+ ++F  M  R+ VSWN++I   + +G+  +A   Y  M L  V +P  V+ +SLL
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGR 507
           M   GV+  D TF  +L  CS    + KGME       V ++    + Y    ++ + G 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEV---HGVVFKLGFDTDVYVGNTLLMLYGN 57

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            G L +AR   + MP + DV+ W  ++G  S++GD
Sbjct: 58  CGFLNDARRLFDEMPER-DVVSWNTIIGLLSVNGD 91


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 167/431 (38%), Positives = 258/431 (59%), Gaps = 1/431 (0%)

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           M  R++ +WT++I+G  QN + +E L L + M  G   PN  T+ S + A     +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
            QIH +  K     D+ + SAL+DMY++CG ++ A  +F+  E  +GVS   ++ GFA+ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           G  E  + +F +M + G E      S+V        +L  GK +H+ +IKS    + FV 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           N +++MY+K G + D+ KVF  +  ++ V+WNSM+ AFA++G G +A+  +EEM+  GV 
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 240

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
              +TFLS+L ACSH GLV +G ++   M E H + P  +HY  VVD++GRAGLL +A  
Sbjct: 241 LNQITFLSILTACSHGGLVKEGKQYFDMMKE-HNLEPEIDHYVTVVDLLGRAGLLNDALV 299

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FI +MP+KP   VW ALLG+C +H ++++G++AA+ +F   PD   P +L+ NIY+ +G+
Sbjct: 300 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 359

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W   A+  K MK  GV KE   SW+EIE  VH FV +D  HP+++ I+    E+   +  
Sbjct: 360 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 419

Query: 637 EGYVPNKRFIL 647
            GYVPN  ++L
Sbjct: 420 AGYVPNTDYVL 430



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 165/341 (48%), Gaps = 10/341 (2%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           M  RD  SW ++++G+ +N   D   G     L   F + +  +F  +L A   S  S +
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRF-KPNGFTFASLLKAAGASASSGI 59

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
            + IH L     + ++V VG+AL+  Y +CG       VF ++  +N ++W A+I+G  +
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFAR 119

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
               E  L +F +M          TY S   A +G+ AL +G+ +H  + K   +    +
Sbjct: 120 KGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
            + ++DMY+K GS+ DA ++F+  ++ D V+   +L  FAQ G   EA+  F +M K G+
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGV 239

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS 412
            ++     ++L        +  GKQ   ++ + +    P +++   ++++  + G L D+
Sbjct: 240 HLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNL--EPEIDHYVTVVDLLGRAGLLNDA 297

Query: 413 IKVFSRMAPRNSVS-WNSMIAAFARHGNG----FKALELYE 448
           +    +M  + + + W +++ +   H N     F A  ++E
Sbjct: 298 LVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFE 338



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 125/269 (46%), Gaps = 11/269 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    + LL  +       +G  +HA  +K          Y+  +   + ++LL  Y +C
Sbjct: 40  NGFTFASLLKAAGASASSGIGEQIHALTVK----------YDWHDDVYVGSALLDMYARC 89

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +M  A+ +FD +  ++ VSWN +++GF R G+ +     F      GF +    +++ +
Sbjct: 90  GRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGF-EATHFTYSSV 148

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
            SA          K +H  +   G      VGN ++  Y K GS    RKVF  +  +++
Sbjct: 149 FSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDL 208

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           +TW ++++   Q  L  E +  F +M    ++ N +T+LS + ACS    + EG+Q   +
Sbjct: 209 VTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDM 268

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDA 311
           + +  L+ ++     ++D+  + G + DA
Sbjct: 269 MKEHNLEPEIDHYVTVVDLLGRAGLLNDA 297


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 296/556 (53%), Gaps = 9/556 (1%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + ++L   Y K  +  +A K+FD +P  DT+ WNT+++G   +   +     F R ++
Sbjct: 149 TFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGSEALEA----FVRMVD 204

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G  + D  +    L A   +    + + +H     CG  E   V   L++ Y KCG   
Sbjct: 205 AGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMD 264

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S + +F  M   +++ + A+ISG   N + E  ++LF ++      PNS T ++ +   S
Sbjct: 265 SAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYS 324

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
                   R +H  + K  L +D  + +AL  +Y +   +E A  IF+   E    S   
Sbjct: 325 PFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNA 384

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++ G+AQNG  E A+ LF  M +  ++ +P  +S+ L       +L LGK +H +I K  
Sbjct: 385 MISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEK 444

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              N +V   LI+MY+KCG + ++  +F RM  +N VSWN+MI+ +  HG G +AL+LY+
Sbjct: 445 LELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYK 504

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           +M    + PT  TFLS+++ACSH GLV++G +  + MT  +RI+P  EH  C+VD++GRA
Sbjct: 505 DMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRA 564

Query: 509 GLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           G L EA   I   P   + P   VW ALLGAC +H +S++ K A++KLF    ++   Y+
Sbjct: 565 GKLNEALELISEFPQSAIGPG--VWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYV 622

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++N+Y+    + E A   +  K   + K  G + IEI  + H F+  D +HPQ++ I+ 
Sbjct: 623 LLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYS 682

Query: 626 VLAELLRLMIDEGYVP 641
            L  L   MI+ GY P
Sbjct: 683 YLERLTAKMIEAGYQP 698



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 207/411 (50%), Gaps = 14/411 (3%)

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
           R   +  ++ +H L    GY  +  V +AL   YFK       RKVF  +   + I W  
Sbjct: 126 RGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNT 185

Query: 228 VISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           +++GL  +    E L+ FV+M   G + P+S T  SS+ A +    +  GR +HG   K 
Sbjct: 186 LLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKC 241

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
            L     + + LM +YSKCG ++ A  +F+  +  D V+   ++ G++ NG  E +++LF
Sbjct: 242 GLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELF 301

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            ++  +G   + + + AV+ V+       L + +H+ ++K+   ++  V+  L  +Y + 
Sbjct: 302 KELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRL 361

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
            D+E +  +F  M  +   SWN+MI+ +A++G    A+ L++ M+   V+P  +T  S L
Sbjct: 362 NDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTL 421

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC+H+G ++ G +++  +    ++         ++DM  + G + EARS  +RM  K +
Sbjct: 422 SACAHLGALSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-N 479

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCS 574
           V+ W A++    +HG        A KL+    D+   P     ++ IY+CS
Sbjct: 480 VVSWNAMISGYGLHGQGA----EALKLYKDMLDARILPTSSTFLSVIYACS 526


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/585 (31%), Positives = 316/585 (54%), Gaps = 55/585 (9%)

Query: 68  ASFIKTFEPFDNQNVYNVPNA---TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN 124
           + +IK     D + +++  +A    V W ++LS Y++  ++  A +LF+ MP+++ VSWN
Sbjct: 14  SGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWN 73

Query: 125 TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184
           TM+ G+ +N E D     F+R                                       
Sbjct: 74  TMIDGYGKNREVDKAIEVFERM-------------------------------------- 95

Query: 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244
             +E  +   NA+I +  +CG     R+ F EM  R+VI+WT ++ GL ++   +E  K+
Sbjct: 96  --HERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKV 153

Query: 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
           F +M       N +++ + V   +    L E       L++   + +L   + ++  + +
Sbjct: 154 FDRMP----ERNVVSWNAMVTGYAKNMRLDEAFD----LFERMPERNLSSWNTMITGFIQ 205

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK-AGIEIDPNMVSA 363
            G +  A ++F    E + VS T ++ G+ Q G  E A+++FV+M+K  G   +      
Sbjct: 206 NGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVN 265

Query: 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR--MAP 421
           VLG       LG G+Q+H LI KS +    FV + L+NMYSKCG+L  + K+F    ++ 
Sbjct: 266 VLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQ 325

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ V WN MIAA+A HG G +A+EL+E+M+  G +P DV+++ LL ACSH GLV++G+ +
Sbjct: 326 RDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNY 385

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              +   + I  R +H+AC+VD+ GRAG L EA  FI+++  K    +W  LL  C+ HG
Sbjct: 386 FDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHG 445

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           D E+G+ AA++L    P++   Y+L++NIY+   +W+E ++   +MKE G+ K+ G SWI
Sbjct: 446 DLEIGQLAAKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWI 505

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI 646
           E+  +VH F+  DK H Q++ I+ ++ ++   M  E +VPN  F+
Sbjct: 506 EVGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMKAE-HVPNNDFV 549



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 195/454 (42%), Gaps = 118/454 (25%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDD--------------------------------MPM 117
           V W +++S Y+KC  + +A +LFD                                 MP+
Sbjct: 7   VTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPV 66

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA---CDRSELSLV 174
           ++ VSWNTM+ G+ +N E D     F+R      ++ +  S+  +++A   C R E +  
Sbjct: 67  KNVVSWNTMIDGYGKNREVDKAIEVFER-----MHERNMVSWNAVIAALVQCGRVEEARR 121

Query: 175 -------------SKMIHCL-----------VYLCGYEEEVTVGNALITSYFK------- 203
                        + M+  L           V+    E  V   NA++T Y K       
Sbjct: 122 RFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEA 181

Query: 204 ------------------------CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
                                    G  +  RKVF EM  +NV++WT +I+G VQ    E
Sbjct: 182 FDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESE 241

Query: 240 EGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
             LK+FV+M   G   PN  T+++ + ACS +  L EG+Q+H ++ K   Q    + SAL
Sbjct: 242 SALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASAL 301

Query: 299 MDMYSKCGSVEDAWQIFE--FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           ++MYSKCG +  A +IF+     + D V    ++  +A +G   EA++LF  M   G+  
Sbjct: 302 LNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDM--QGLGF 359

Query: 357 DPNMVSAVLGVFG------VDTSLG----LGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
            PN VS V  +        VD  L     LG+  +S+ ++ D  +       L+++  + 
Sbjct: 360 KPNDVSYVELLSACSHAGLVDEGLNYFDELGRD-NSIQLREDHHA------CLVDLCGRA 412

Query: 407 GDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           G L+++     ++  + S S W  ++A    HG+
Sbjct: 413 GRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGD 446



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 182/365 (49%), Gaps = 34/365 (9%)

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLF 245
           +E +V    A+I+ Y KCG     R++F  +  +++V+TWTA++SG V+ +  EE  +LF
Sbjct: 2   HERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLF 61

Query: 246 VKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGIL--WKLALQSDLCIESALMDMY 302
             M +  +++ N++           +    + R++   +  ++   + ++   +A++   
Sbjct: 62  EVMPVKNVVSWNTM-----------IDGYGKNREVDKAIEVFERMHERNMVSWNAVIAAL 110

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            +CG VE+A + F+   + D +S T +++G A++G  +EA ++F +M +  +     MV+
Sbjct: 111 VQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVT 170

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN----NGLINMYSKCGDLEDSIKVFSR 418
                  +D +  L            F   P  N    N +I  + + G+L  + KVF+ 
Sbjct: 171 GYAKNMRLDEAFDL------------FERMPERNLSSWNTMITGFIQNGELAWARKVFNE 218

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNK 477
           M  +N VSW +MI  + + G    AL+++ EM K  G  P + TF+++L ACS +  + +
Sbjct: 219 MPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGE 278

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV-KPDVLVWQALLGA 536
           G + +  +        R    + +++M  + G L  AR   + + + + D+++W  ++ A
Sbjct: 279 GQQ-VHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAA 337

Query: 537 CSIHG 541
            + HG
Sbjct: 338 YAHHG 342


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 174/524 (33%), Positives = 287/524 (54%), Gaps = 32/524 (6%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +++  ++  C ++      K +H  +   G+   + + N L+  Y KCGS    RKVF E
Sbjct: 86  STYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDE 145

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-----------LGLIN----------- 254
           M  R++ +W  +++G  +  L EE  KLF +M             G +            
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205

Query: 255 ----------PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304
                     PN  T   +V A + ++ +  G++IHG + +  L SD  + S+LMDMY K
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364
           CG +++A  IF+   E D VS T ++  + ++    E   LF ++V +    +    + V
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325

Query: 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424
           L      T+  LGKQ+H  + +  F    F ++ L++MY+KCG++E +  V       + 
Sbjct: 326 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDL 385

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484
           VSW S+I   A++G   +AL+ ++ +   G +P  VTF+++L AC+H GLV KG+EF  S
Sbjct: 386 VSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYS 445

Query: 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           +TE HR+S  ++HY C+VD++ R+G   + +S I  MP+KP   +W ++LG CS +G+ +
Sbjct: 446 ITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNID 505

Query: 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
           + + AA++LF  +P++P  Y+ MANIY+ +G+W+E  K  KRM+E+GV K  G SW EI+
Sbjct: 506 LAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIK 565

Query: 605 KQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ++ H F+  D  HP  + I   L EL + M +EGYVP    +LH
Sbjct: 566 RKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLH 609



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 207/438 (47%), Gaps = 46/438 (10%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE- 148
           VIWN LL  Y KC  + +A K+FD+MP RD  SWN MV+G+   G  +     F    E 
Sbjct: 121 VIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEK 180

Query: 149 ---------LGFYQLDQASFTIILSAC------DRSELSLVS---------------KMI 178
                     G+ + DQ    ++L +        R  +  VS               K I
Sbjct: 181 DSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEI 240

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H  +   G + +  + ++L+  Y KCG     R +F ++  ++V++WT++I    ++  +
Sbjct: 241 HGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRW 300

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
            EG  LF ++      PN  T+   + AC+ L     G+Q+HG + ++         S+L
Sbjct: 301 REGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSL 360

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           +DMY+KCG++E A  + +   + D VS T ++ G AQNG  +EA++ F  ++K+G +  P
Sbjct: 361 VDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK--P 418

Query: 359 NMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
           + V+ V  V    T  GL ++     +S+  K   +        L+++ ++ G  E    
Sbjct: 419 DHVTFV-NVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKS 477

Query: 415 VFSRMAPRNS-VSWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTD-VTFLSLLHACS 470
           V S M  + S   W S++   + +GN    ++L EE   E   +EP + VT++++ +  +
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGN----IDLAEEAAQELFKIEPENPVTYVTMANIYA 533

Query: 471 HVGLVNKGMEFLKSMTEV 488
             G   +  +  K M E+
Sbjct: 534 AAGKWEEEGKMRKRMQEI 551



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 38/349 (10%)

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
            I  L   +L  E ++L  +       P + TY + +  CS  +AL EG+++H  +    
Sbjct: 60  AIDVLCGQKLLREAVQLLGRAK----KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSG 115

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF- 346
               + I + L+ MY+KCGS+ DA ++F+     D  S  V++ G+A+ G  EEA +LF 
Sbjct: 116 FVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFD 175

Query: 347 ----------VKMVKAGIEID-------------------PNM--VSAVLGVFGVDTSLG 375
                       MV   ++ D                   PN+  VS  +        + 
Sbjct: 176 EMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIR 235

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            GK+IH  I+++   S+  + + L++MY KCG ++++  +F ++  ++ VSW SMI  + 
Sbjct: 236 RGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYF 295

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
           +     +   L+ E+      P + TF  +L+AC+ +     G +    MT V    P +
Sbjct: 296 KSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVG-FDPYS 354

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
              + +VDM  + G +  A+  ++  P KPD++ W +L+G C+ +G  +
Sbjct: 355 FASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLIGGCAQNGQPD 402


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 294/516 (56%), Gaps = 9/516 (1%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           +N +VSG+         F  ++R ++ GF   D  +F  +L +C +       + +H ++
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLP-DMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G+   + V N+L+  Y  C       +VF EM VR+V++WT VISG V+  L++E +
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF++M    + PN+ T++S ++AC     L  G+ IHG+ +K A    L + +ALMDMY
Sbjct: 121 GLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMY 177

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG +  A Q+F+   E D VS T I+ G  Q    +EA++LF  M  +GIE D  +++
Sbjct: 178 VKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILT 237

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           +VL       +L  G+ +H  I +     +  +   +++MY+KCG +E S+++F+ M  +
Sbjct: 238 SVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHK 297

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           N ++WN+++   A HG+ +K LEL+EEM   G+ P +VTFL++L AC H GLVN+G ++ 
Sbjct: 298 NVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYF 357

Query: 483 KSMT-EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             M  + + + PR EHY C+VD++ RA LL EA    + MP+ PDV +  ALL AC  +G
Sbjct: 358 NWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENG 417

Query: 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWI 601
           ++E+ +   ++           Y+L++NI++ + RW +  +  + MKE G+ K  G + I
Sbjct: 418 NTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVI 477

Query: 602 EIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDE 637
           E++ + H F+V D  HPQ   I      LL+++ D+
Sbjct: 478 ELDGKAHEFIVGDTRHPQDKRIR----LLLKILSDQ 509



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/383 (29%), Positives = 203/383 (53%), Gaps = 14/383 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL+ FY  C +  +A ++FD+M +RD VSW  ++SG++R G FD   G F R       
Sbjct: 73  NSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM----DV 128

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + + A+F  +L AC R     V K IH L +   +   + V NAL+  Y KCG     ++
Sbjct: 129 EPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQ 188

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  +++++WT++ISGLVQ    +E L+LF  M    I P+ +   S + AC+ L A
Sbjct: 189 VFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGA 248

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  GR +H  + + A++ D+ I +A++DMY+KCG +E + QIF      + ++   +L G
Sbjct: 249 LDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNG 308

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDF 389
            A +G   + ++LF +MV+ G+   PN V+  L +       GL   G+Q  + +    +
Sbjct: 309 LAMHGHAYKVLELFEEMVRVGMR--PNEVT-FLAILTACCHCGLVNEGRQYFNWMKGQQY 365

Query: 390 TSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALEL 446
              P + +   ++++  +   L++++++   M     V    ++++A   +GN     E+
Sbjct: 366 NLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQEI 425

Query: 447 YEE-MKLEGVEPTDVTFLSLLHA 468
            +  ++L+  +      LS +HA
Sbjct: 426 LDRFVELDSHDSGVYVLLSNIHA 448



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 67/140 (47%), Gaps = 14/140 (10%)

Query: 27  KIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86
           ++ QD  SS    +  + + ++ +LS  A+ G    G  +H    +    +D Q      
Sbjct: 219 ELFQDMQSSG---IEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQ------ 269

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
               I  +++  Y KC  +  ++++F+ MP ++ ++WN +++G   +G        F+  
Sbjct: 270 ----IGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEM 325

Query: 147 LELGFYQLDQASFTIILSAC 166
           + +G  + ++ +F  IL+AC
Sbjct: 326 VRVGM-RPNEVTFLAILTAC 344


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 168/488 (34%), Positives = 278/488 (56%), Gaps = 5/488 (1%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL AC       + + +H          + T  N L+  Y KCG       VF  M VR 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V+TWT++I+   +  L +E ++LF +M    ++P+  T  + + AC+   +L  G+ +H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + +  +QS++ + +ALMDMY+KCGS+EDA  +F      D +S   ++ G+++N    E
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 342 AMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           A+ LF  MV   +E+ P+   ++ +L       SL  GK++H  I+++ F S+  V N L
Sbjct: 184 ALSLFGDMV---LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           ++MY KCG    +  +F  +  ++ ++W  MIA +  HG G  A+  + EM+  G+EP +
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           V+F+S+L+ACSH GL+++G  F   M +   + P+ EHYAC+VD++ R+G L  A  FI+
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
            MP++PD  +W ALL  C IH D ++ +  AE +F  +P++   Y+L+AN Y+ + +W+E
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
             K  +++   G+ K  G SWIE++ +VH F+  +  HPQA  I  +L  L   M +EGY
Sbjct: 421 VKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGY 480

Query: 640 VPNKRFIL 647
            P  R+ L
Sbjct: 481 FPKTRYAL 488



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 169/316 (53%), Gaps = 8/316 (2%)

Query: 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320
           +S + AC+    +  GR +HG   K  +       + L+DMY+KCG ++ A  +F+    
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSV 61

Query: 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI 380
              V+ T ++  +A+ G  +EA++LF +M + G+  D   ++ VL     + SL  GK +
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H+ I ++D  SN FV N L++MY+KCG +ED+  VF  M  ++ +SWN+MI  ++++   
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYAC 500
            +AL L+ +M LE ++P   T   +L AC+ +  +++G E    +      S +    A 
Sbjct: 182 NEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA- 239

Query: 501 VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH--GDSEMGKYAAEKLFLAQP 558
           +VDM  + G+ + AR   + +P K D++ W  ++    +H  G++ +  +   +    +P
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 559 DSPAPYILMANIYSCS 574
           D  +    ++ +Y+CS
Sbjct: 299 DEVS---FISILYACS 311



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 149/308 (48%), Gaps = 12/308 (3%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +L   A  G   LG ++H S +K            V   T   N+LL  Y KC  +  A+
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKAC----------VHWKTTFCNTLLDMYAKCGVLDGAI 53

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +FD M +R  V+W ++++ + R G  D     F      G    D  + T +L AC  +
Sbjct: 54  LVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSP-DIFTITTVLHACACN 112

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 K +H  +     +  + V NAL+  Y KCGS      VF EM V+++I+W  +I
Sbjct: 113 GSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMI 172

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            G  +N L  E L LF  M L +  P+  T    + AC+ L +L  G+++HG + +    
Sbjct: 173 GGYSKNSLPNEALSLFGDMVLEM-KPDGTTLACILPACASLASLDRGKEVHGHILRNGFF 231

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           SD  + +AL+DMY KCG    A  +F+     D ++ TV++ G+  +GF   A+  F +M
Sbjct: 232 SDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEM 291

Query: 350 VKAGIEID 357
            +AGIE D
Sbjct: 292 RQAGIEPD 299



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 130/272 (47%), Gaps = 15/272 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I+ +L   A  G    G  +H ++I+     +N    N+     + N+L+  Y KC  M 
Sbjct: 102 ITTVLHACACNGSLENGKDVH-NYIR-----ENDMQSNI----FVCNALMDMYAKCGSME 151

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF-KRSLELGFYQLDQASFTIILSA 165
           +A  +F +MP++D +SWNTM+ G+ +N   +     F    LE+   + D  +   IL A
Sbjct: 152 DANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEM---KPDGTTLACILPA 208

Query: 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITW 225
           C         K +H  +   G+  +  V NAL+  Y KCG     R +F  +  +++ITW
Sbjct: 209 CASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITW 268

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW- 284
           T +I+G   +      +  F +M    I P+ ++++S + ACS    L EG +   ++  
Sbjct: 269 TVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQD 328

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           +  ++  L   + ++D+ ++ G +  A++  +
Sbjct: 329 ECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 303/569 (53%), Gaps = 58/569 (10%)

Query: 77  FD-NQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           FD N  + NV    V W +L+S Y++ +++  A +LFD MP+++ +SWNTM+ G+ R G 
Sbjct: 120 FDRNDAIKNV----VTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGW 175

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
            D     F+   E      +    T+I +   R  +    ++ + +      E +V    
Sbjct: 176 IDQALDLFEXMPERNVVSWN----TVITAFMQRRRVDEAQELFNRMP-----ERDVISWT 226

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
            ++    K G     R +F +M VRNV++W  +I G  QN   +E  KLF +M      P
Sbjct: 227 TMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQM------P 280

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
                                            + +L   + ++  + + G +E A   F
Sbjct: 281 ---------------------------------ERELSSWNTMITGFIQNGKLERAVDFF 307

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTS 373
                 + V+ T ++ G  Q+G  EEA+++F +M +A   + PN  +  +VLG      +
Sbjct: 308 YKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEM-QAANNVKPNEGTFVSVLGACSKLAA 366

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSWNSMI 431
           L  G+QIH +I K+ +     V + LINMYSKCG+LE + K+F    +  R+ VSWN MI
Sbjct: 367 LCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMI 426

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           AA+A HG+G KA+ L++EM+  G  P +VT+++LL ACSH GLV++G++  +++     I
Sbjct: 427 AAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSI 486

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
             R +H+ C+VD+ GRAG L EA  FI+ + VKP   VW ALL  C++HG  ++GK  AE
Sbjct: 487 KLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAE 546

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
           KL   +P++   Y++++NIY+ +G+W+E A    +MK+ G+ K+ G SWIE+   VH FV
Sbjct: 547 KLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHVFV 606

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           V D  H + + I+ +L +L   M   G+ 
Sbjct: 607 VGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 140/527 (26%), Positives = 232/527 (44%), Gaps = 126/527 (23%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           L+S F  C   V P I+  ++D  S+ S +   N+     L++   KEG   +G +    
Sbjct: 40  LSSQFSTCQ--VVPKISSPVRD-FSANSNVARSNW-----LITQLGKEGK--IGEAR--- 86

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC-------------DQMRNAV------- 109
             + FE   +++V       V W ++++ Y+KC             D ++N V       
Sbjct: 87  --QVFEEMPDRDV-------VSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVS 137

Query: 110 ------------KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE--------- 148
                       +LFD MP+++ +SWNTM+ G+ R G  D     F+   E         
Sbjct: 138 GYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTV 197

Query: 149 -LGFYQ---LDQA-------------SFTIILSACDRS----------ELSLVSKMIHCL 181
              F Q   +D+A             S+T +++   ++          +   V  ++   
Sbjct: 198 ITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWN 257

Query: 182 VYLCGY-----------------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
             + GY                 E E++  N +IT + + G        F +M  +NV+T
Sbjct: 258 TMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVT 317

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           WTAVISG VQ+   EE LK+F +M     + PN  T++S + ACS L ALCEG+QIH I+
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQII 377

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--ELDGVSMTVILVGFAQNGFEEE 341
            K   Q    + SAL++MYSKCG +E A +IF+       D VS   ++  +A +G   +
Sbjct: 378 SKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHK 437

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGLGKQI---HSLIIKSD-FTSNP 393
           A+ LF +M   G   D     A+L        VD  L L + +    S+ ++ D FT   
Sbjct: 438 AISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTC-- 495

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
                L++++ + G L+++      +  + S S W +++A    HG+
Sbjct: 496 -----LVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 179/384 (46%), Gaps = 49/384 (12%)

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           V   N LIT   K G     R+VF EM  R+V++WTAVI+G ++  + EE   LF +   
Sbjct: 66  VARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND- 124

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
                N +T+ + V        + E R+    L+      ++   + +++ Y++ G ++ 
Sbjct: 125 --AIKNVVTWTALVSGYVRWNRIEEARR----LFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  +FE   E + VS   ++  F Q    +EA +LF +M +  +     MV+ +     +
Sbjct: 179 ALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRI 238

Query: 371 DTSLGLGKQI--------HSLIIKSDFTSNPFVN-----------------NGLINMYSK 405
           D +  L  ++        +++II   +  N  ++                 N +I  + +
Sbjct: 239 DDARLLFDKMPVRNVVSWNTMII--GYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQ 296

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK-LEGVEPTDVTFLS 464
            G LE ++  F +M+ +N V+W ++I+   + G   +AL+++ EM+    V+P + TF+S
Sbjct: 297 NGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVS 356

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPR------AEHYACVVDMVGRAGLLIEARSFI 518
           +L ACS +  + +G        ++H+I  +      A+  + +++M  + G L  AR   
Sbjct: 357 VLGACSKLAALCEGQ-------QIHQIISKTVYQEVADVVSALINMYSKCGELELARKIF 409

Query: 519 ERMPV-KPDVLVWQALLGACSIHG 541
           +   +   DV+ W  ++ A + HG
Sbjct: 410 DDGSIGHRDVVSWNGMIAAYAHHG 433



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 48/246 (19%)

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            S++   + L+    K G + +A Q+FE   + D VS T ++ G+ + G  EEA  LF  
Sbjct: 63  NSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLF-- 120

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
                                                ++D   N      L++ Y +   
Sbjct: 121 ------------------------------------DRNDAIKNVVTWTALVSGYVRWNR 144

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           +E++ ++F  M  +N +SWN+MI  +AR G   +AL+L+E M    V    V++ +++ A
Sbjct: 145 IEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNV----VSWNTVITA 200

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                 V++  E    M E   IS     +  +V  + + G + +AR   ++MPV+ +V+
Sbjct: 201 FMQRRRVDEAQELFNRMPERDVIS-----WTTMVAGLSKNGRIDDARLLFDKMPVR-NVV 254

Query: 529 VWQALL 534
            W  ++
Sbjct: 255 SWNTMI 260


>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
 gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 566

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/538 (33%), Positives = 301/538 (55%), Gaps = 12/538 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDD-MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SL++ Y +C+QM  AV +F D    R+  ++N +++GF+ NG    GF F+KR   +G  
Sbjct: 15  SLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+ +F  ++ AC   E   V K+  CL  + G E  V VG+AL+ +Y K   +    K
Sbjct: 75  P-DKFTFPCVVRAC--CEFMEVRKIHGCLFKM-GLELNVFVGSALVNTYLKVDGTEDAEK 130

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  R+V+ W A+I+G  +     + + +F +M    I+ +  T  S +   + +  
Sbjct: 131 VFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILTSMGD 190

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  GR IHGI+ K+   S + + +AL+DMY KC   EDA  IFE   E D  S   I+  
Sbjct: 191 INNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEMINEKDLFSWNSIISA 250

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII-----KS 387
             Q    +  ++LF KM+ + +  D   ++AVL       +L  G++IH  +I     K+
Sbjct: 251 HEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHLAALMHGREIHGYMIVNGLGKN 310

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
           +   +  +NN +++MY+KCG ++++  +F  M  ++  SWN MI  +A HG G +AL+++
Sbjct: 311 ENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVASWNIMIMGYAMHGYGTEALDMF 370

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M    ++P  VTF+ +L ACSH G V++G  FL  M     + P  EHY C++DM+GR
Sbjct: 371 HRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRSFLTRMELEFGVIPTIEHYTCIIDMLGR 430

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYI 565
           AG L EA    +R+P++ ++++W ALLGAC +HG++E+G    EK+   +P       YI
Sbjct: 431 AGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNAELGNVVGEKITQLEPKHCGSGSYI 490

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           LM+++Y   GR++E  +  + MKE  V K  G SWIE++  ++ F + D+ H + + +
Sbjct: 491 LMSSLYGVVGRYEEALEVRRTMKEQNVKKTPGCSWIELKDGLYVFSMGDRTHHELNAL 548



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 208/410 (50%), Gaps = 19/410 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L++ YLK D   +A K+F+++P RD V WN M++G+ + G  +     FKR  E G
Sbjct: 111 VGSALVNTYLKVDGTEDAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEG 170

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              L + + T ILS           + IH +V   GY   V V NALI  Y KC  +   
Sbjct: 171 I-SLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDA 229

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
             +F  +  +++ +W ++IS   Q   ++  L+LF KM    + P+ +T  + + ACS L
Sbjct: 230 LMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKMLGSRVLPDVITITAVLPACSHL 289

Query: 271 QALCEGRQIHGI-----LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
            AL  GR+IHG      L K     D+ + +A+MDMY+KCG +++A  IF+     D  S
Sbjct: 290 AALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKDVAS 349

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
             ++++G+A +G+  EA+ +F +M +A  +I P++V+ V GV    +  G   Q  S + 
Sbjct: 350 WNIMIMGYAMHGYGTEALDMFHRMCEA--QIKPDVVTFV-GVLSACSHAGFVHQGRSFLT 406

Query: 386 KS--DFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNG 440
           +   +F   P + +   +I+M  + G L ++  +  R+    N + W +++ A   HGN 
Sbjct: 407 RMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLHGNA 466

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK---GMEFLKSMTE 487
                + E  K+  +EP      S +   S  G+V +    +E  ++M E
Sbjct: 467 ELGNVVGE--KITQLEPKHCGSGSYILMSSLYGVVGRYEEALEVRRTMKE 514



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 119/252 (47%), Gaps = 26/252 (10%)

Query: 296 SALMDMYSKCGSVEDAWQIF-EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
           ++L++MYS+C  +E+A  +F +   E +  +   I+ GF  NG   +  Q + +M   G+
Sbjct: 14  TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQFYKRMRSVGV 73

Query: 355 EID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             D    P +V A      V       ++IH  + K     N FV + L+N Y K    E
Sbjct: 74  MPDKFTFPCVVRACCEFMEV-------RKIHGCLFKMGLELNVFVGSALVNTYLKVDGTE 126

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           D+ KVF  +  R+ V WN+MI  + + G+  KA+ +++ M  EG+  +  T  S+L   +
Sbjct: 127 DAEKVFEELPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSRFTTTSILSILT 186

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVK 524
            +G +N G         +H I  +  + +CV      +DM G+     +A    E M  +
Sbjct: 187 SMGDINNG-------RAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFE-MINE 238

Query: 525 PDVLVWQALLGA 536
            D+  W +++ A
Sbjct: 239 KDLFSWNSIISA 250



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 36/340 (10%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + +LSI    G  + G ++H    K              +   + N+L+  Y KC    +
Sbjct: 179 TSILSILTSMGDINNGRAIHGIVTKM----------GYSSCVAVSNALIDMYGKCKHTED 228

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL-DQASFTIILSAC 166
           A+ +F+ +  +D  SWN+++S   +  + D     F +   LG   L D  + T +L AC
Sbjct: 229 ALMIFEMINEKDLFSWNSIISAHEQCDDHDGTLRLFGKM--LGSRVLPDVITITAVLPAC 286

Query: 167 DRSELSLVSKMIHCLVYLCGY-----EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
                 +  + IH  + + G       ++V + NA++  Y KCG   +   +F  MR ++
Sbjct: 287 SHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFDLMRNKD 346

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V +W  +I G   +    E L +F +M    I P+ +T++  + ACS    + +GR    
Sbjct: 347 VASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGRS--- 403

Query: 282 ILWKLALQSDL--CIE--SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ-- 335
            L ++ L+  +   IE  + ++DM  + G + +A+ + +     D + + + L+G  +  
Sbjct: 404 FLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLEDNLILWMALLGACRLH 463

Query: 336 ------NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
                 N   E+  QL  K   +G  I   ++S++ GV G
Sbjct: 464 GNAELGNVVGEKITQLEPKHCGSGSYI---LMSSLYGVVG 500



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 44/212 (20%)

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR-MAPRNSVSWNSMIAAFARHGNGFK 442
           ++ S F   P     LINMYS+C  +E+++ VF      RN  ++N++IA F  +G    
Sbjct: 1   MVTSGFIHLPSSITSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAAD 60

Query: 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
             + Y+ M+  GV P   TF  ++ AC          EF+    EV +I      + C+ 
Sbjct: 61  GFQFYKRMRSVGVMPDKFTFPCVVRACC---------EFM----EVRKI------HGCLF 101

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA-CSIHGDSEMGKYAAEKLFLAQPDSP 561
                            +M ++ +V V  AL+     + G  +     AEK+F   P+  
Sbjct: 102 -----------------KMGLELNVFVGSALVNTYLKVDGTED-----AEKVFEELPERD 139

Query: 562 AP-YILMANIYSCSGRWKERAKAIKRMKEMGV 592
              +  M N Y+  G   +     KRM E G+
Sbjct: 140 VVLWNAMINGYTKIGHLNKAVVVFKRMGEEGI 171


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 200/583 (34%), Positives = 304/583 (52%), Gaps = 42/583 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y K  ++  A  LFD    +D VSWNT++S   +N  F+    +    L+ G  
Sbjct: 225 NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGV- 283

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFKCGSSSSGR 211
           + +  +   +L AC   E+    K IH  V +     E   VG AL+  Y  C     GR
Sbjct: 284 RPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGR 343

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSG 269
            VF  M  R +  W A+I+G V+N+   E ++LFV+M   LGL +PNS+T  S + AC  
Sbjct: 344 LVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGL-SPNSVTLSSVLPACVR 402

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            ++  +   IH  + K   + D  +++ALMDMYS+ G +E A  IF      D VS   +
Sbjct: 403 CESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTM 462

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIE----------------IDPNMVS--AVLGVFGVD 371
           + G+   G  ++A+ L   M +   E                + PN V+   VL      
Sbjct: 463 ITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAAL 522

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +LG GK+IH+  +K   + +  V + L++MY+KCG L  S  VF +M+ RN ++WN +I
Sbjct: 523 AALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLI 582

Query: 432 AAFARHGNGFKALELYEEMKLEG-----VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
            A+  HG G +AL+L+  M  EG     + P +VT++++  + SH G+V++G+    +M 
Sbjct: 583 MAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMK 642

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK-PDVLVWQALLGACSIHGDSEM 545
             H I P ++HYAC+VD++GR+G + EA + I+ MP     V  W +LLGAC IH + E+
Sbjct: 643 AKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEI 702

Query: 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK 605
           G+ AA+ LF+  P+     +      S  GR         +MKE GV KE G SWIE   
Sbjct: 703 GEIAAKNLFVLDPN----VLDYGTKQSMLGR---------KMKEKGVRKEPGCSWIEHGD 749

Query: 606 QVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +VH F+  D  HPQ+  +H  L  L   M  EGYVP+   +LH
Sbjct: 750 EVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLH 792



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 156/542 (28%), Positives = 256/542 (47%), Gaps = 44/542 (8%)

Query: 36  TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
           T+ +  DN+     +L  +A     +LG  LHA   K  +             T + NSL
Sbjct: 78  TAGVPPDNFA-FPAVLKATAGIQDLNLGKQLHAHVFKFGQAL----------PTAVPNSL 126

Query: 96  LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
           ++ Y KC  +  A ++FD++  RD VSWN+M++   R  E+++    F+  L      + 
Sbjct: 127 VNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML---LENVG 183

Query: 156 QASFTIILSACDRSELS---LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             SFT++  A   S L    L+ K +H  V   G     T  NAL+T Y K G     + 
Sbjct: 184 PTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFT-NNALVTMYAKLGRVYEAKT 242

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F     +++++W  +IS L QN  +EE L     M    + PN +T  S + ACS L+ 
Sbjct: 243 LFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEM 302

Query: 273 LCEGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           L  G++IH  +L    L  +  +  AL+DMY  C   E    +F+            ++ 
Sbjct: 303 LGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIA 362

Query: 332 GFAQNGFEEEAMQLFVKMV-KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           G+ +N F+ EA++LFV+MV + G+  +   +S+VL       S    + IHS ++K  F 
Sbjct: 363 GYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFE 422

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL---- 446
            + +V N L++MYS+ G +E +  +F  M  ++ VSWN+MI  +   G    AL L    
Sbjct: 423 KDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDM 482

Query: 447 --------------YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
                         YE+ K   ++P  VT +++L  C+ +  + KG E + +      +S
Sbjct: 483 QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKE-IHAYAVKQMLS 541

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
                 + +VDM  + G L  +R+  E+M V+ +V+ W  L+ A  +HG  E     A K
Sbjct: 542 KDVAVGSALVDMYAKCGCLNLSRTVFEQMSVR-NVITWNVLIMAYGMHGKGE----EALK 596

Query: 553 LF 554
           LF
Sbjct: 597 LF 598



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 132/260 (50%), Gaps = 5/260 (1%)

Query: 225 WTAVISGLVQNQ-LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           W + +    Q+   + + +  +  M    + P++  + + + A +G+Q L  G+Q+H  +
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
           +K        + ++L++MY KCG ++ A ++F+     D VS   ++    +    E A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 344 QLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVNNGLIN 401
            LF  M+   +      +VS       +   L LGKQ+H+ ++++ D+ +  F NN L+ 
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRT--FTNNALVT 229

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+K G + ++  +F     ++ VSWN++I++ +++    +AL     M   GV P  VT
Sbjct: 230 MYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVT 289

Query: 462 FLSLLHACSHVGLVNKGMEF 481
             S+L ACSH+ ++  G E 
Sbjct: 290 LASVLPACSHLEMLGCGKEI 309



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           +A+  +  MV AG+  D     AVL        L LGKQ+H+ + K        V N L+
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
           NMY KCGD++ + +VF  +  R+ VSWNSMI A  R      A+ L+  M LE V PT  
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEAR 515
           T +S+ HACS+  L+N G+   K   +VH    R   +       +V M  + G + EA+
Sbjct: 188 TLVSVAHACSN--LIN-GLLLGK---QVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAK 241

Query: 516 SFIERMPVKPDVLVWQALLGACS 538
           +  +    K D++ W  ++ + S
Sbjct: 242 TLFDVFDDK-DLVSWNTIISSLS 263


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/498 (33%), Positives = 281/498 (56%), Gaps = 6/498 (1%)

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           F+  D A     ++AC   +     + +H  +    Y   V +   LI  Y +CG+    
Sbjct: 41  FHDYDAA-----ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDA 95

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R V   M  RNV++WTA+ISG  Q+  + E L+LF++M       N  T  + + +C   
Sbjct: 96  RNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVH 155

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           Q++ +  Q+H ++ K   +S + + S+L+DMY K G++++A ++F+   E D VS T I+
Sbjct: 156 QSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAII 215

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+AQ G ++EA+ LF ++  +G++ +    + +L       SL  GKQ+H LI++ +  
Sbjct: 216 SGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELP 275

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
               + N LI+MYSKCG L  S +VF  M  R+++SWN+M+  + RHG G + ++L+  M
Sbjct: 276 FFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTM 335

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
             E V+P  VT L++L  CSH GLV++G++    + +         HY CV+D++GR+G 
Sbjct: 336 T-EEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQ 394

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L +A   IE MP +P   +W +LLGAC +H +  +G+  A+KL   +P +   Y++++NI
Sbjct: 395 LQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNI 454

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           Y+ +G WK+  +  K M E  V KE   SWI ++K +H+F   ++ HP+   I+  + E+
Sbjct: 455 YAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEV 514

Query: 631 LRLMIDEGYVPNKRFILH 648
              +   G+VP+   +LH
Sbjct: 515 YVDVKAAGFVPDLSCVLH 532



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 198/386 (51%), Gaps = 28/386 (7%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +HA  +K          Y  P    +   L+  Y++C  + +A  + D MP R+ VS
Sbjct: 60  GRQVHAHMVKAR--------YRPP--VYLATRLIILYVRCGALDDARNVLDGMPERNVVS 109

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           W  M+SG+ ++G        F R L  G  + ++ +   +L++C   +     + +H LV
Sbjct: 110 WTAMISGYSQSGRHAEALELFIRMLRAGC-KANEFTLATVLTSCPVHQSIQQVEQVHSLV 168

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +E  + VG++L+  Y K G+    RKVF  +  R+ ++ TA+ISG  Q  L +E L
Sbjct: 169 VKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEAL 228

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF +++   +  N +T+ + + + SGL +L  G+Q+HG++ +  L   + ++++L+DMY
Sbjct: 229 DLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMY 288

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           SKCG +  + ++F+   +   +S   +L+G+ ++G  +E +QLF  M +   E+ P+ V+
Sbjct: 289 SKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE---EVKPDSVT 345

Query: 363 AVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPFVNNG----LINMYSKCGDLEDSIKV 415
            +L V    +  GL   G  I  LI+K     N  ++ G    +I++  + G L+ ++ +
Sbjct: 346 -LLAVLSGCSHGGLVDEGLDIFDLIVKE---QNAVIHIGHYGCVIDLLGRSGQLQKALDL 401

Query: 416 FSRMA--PRNSVSWNSMIAAFARHGN 439
              M   P  ++ W S++ A   H N
Sbjct: 402 IEHMPFEPTPAI-WGSLLGACRVHIN 426



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NYV  + LL+  +     + G  +H   ++   PF            V+ NSL+  Y KC
Sbjct: 242 NYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPF----------FIVLQNSLIDMYSKC 291

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            ++  + ++FD+MP R  +SWN M+ G+ R+G        F+   E    + D  +   +
Sbjct: 292 GKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTE--EVKPDSVTLLAV 349

Query: 163 LSACDRSEL 171
           LS C    L
Sbjct: 350 LSGCSHGGL 358


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/617 (30%), Positives = 326/617 (52%), Gaps = 25/617 (4%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           S+TSK+       I  L+S++    H      +H S I           +++ + T + N
Sbjct: 8   SATSKVQ-----QIKTLISVACTVNHL---KQIHVSLIN----------HHLHHDTFLVN 49

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
            LL   L   Q + +  LF      +   +N++++GF+ N  F      F    + G Y 
Sbjct: 50  LLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLY- 108

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L   +F ++L AC R+    +   +H LV  CG+  +V    +L++ Y   G  +   K+
Sbjct: 109 LHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKL 168

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F E+  R+V+TWTA+ SG   +  + E + LF KM    + P+S   +  + AC  +  L
Sbjct: 169 FDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDL 228

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G  I   + ++ +Q +  + + L+++Y+KCG +E A  +F+   E D V+ + ++ G+
Sbjct: 229 DSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGY 288

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           A N F +E ++LF++M++  ++ D   +   L       +L LG+   SLI + +F +N 
Sbjct: 289 ASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNL 348

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+ N LI+MY+KCG +    +VF  M  ++ V  N+ I+  A++G+   +  ++ + +  
Sbjct: 349 FMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+ P   TFL LL  C H GL+  G+ F  +++ V+ +    EHY C+VD+ GRAG+L +
Sbjct: 409 GISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDD 468

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   I  MP++P+ +VW ALL  C +  D+++ +   ++L   +P +   Y+ ++NIYS 
Sbjct: 469 AYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSV 528

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL--- 630
            GRW E A+    M + G+ K  G SWIE+E +VH F+ DDK HP +D I+  L +L   
Sbjct: 529 GGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNE 588

Query: 631 LRLMIDEGYVPNKRFIL 647
           +RLM   G+VP   F+ 
Sbjct: 589 MRLM---GFVPTTEFVF 602


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 197/652 (30%), Positives = 330/652 (50%), Gaps = 73/652 (11%)

Query: 7   FLKLNSNFPFCSSLVSPFITKII--QDPTSSTSKL--VLDNYVDISRLLSISAK--EGHF 60
           F  L   FP   +LVS     ++  Q+P      L  VLD Y DI  L ++ +K     F
Sbjct: 4   FHPLTHQFPKLQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSF 63

Query: 61  HLGPSLHASFIKTF----EPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           H  PSL    ++ +    EP   +NV                             FD +P
Sbjct: 64  HENPSLGIKLMRAYAARGEPGLARNV-----------------------------FDVIP 94

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            R+ + +N M+  ++ N  +D     F R +  G +  D  ++  +L AC  S+   +  
Sbjct: 95  ERNVIFYNVMIRSYMNNHLYDDALLVF-RDMVSGGFSPDHYTYPCVLKACSCSDNLRIGL 153

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            +H  V+  G +  + VGN LI  Y KCG     R V  EM+ ++V++W ++++G  QN 
Sbjct: 154 QLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNM 213

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            +++ L +  +M      P++ T  S + A +   +                ++ L +E 
Sbjct: 214 QFDDALDICREMDGVRQKPDACTMASLLPAVTNTSS----------------ENVLYVEE 257

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
             M++                 E+   VS  V++  + +N    +++ L+++M K  +E 
Sbjct: 258 MFMNL-----------------EKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEP 300

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           D    ++VL   G  ++L LG++IH  + +     N  + N LI+MY++CG LED+ +VF
Sbjct: 301 DAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVF 360

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
            RM  R+  SW S+I+A+   G G+ A+ L+ EM+  G  P  + F+++L ACSH GL+N
Sbjct: 361 DRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLN 420

Query: 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
           +G  + K MT+ ++I+P  EH+AC+VD++GR+G + EA + I++MP+KP+  VW ALL +
Sbjct: 421 EGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSS 480

Query: 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596
           C ++ + ++G  AA+KL    P+    Y+L++NIY+ +GRW E       MK   + K  
Sbjct: 481 CRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMP 540

Query: 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           GIS +E+  QVH+F+  D  HPQ+  I+  L+ L+  M + GYVP     LH
Sbjct: 541 GISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALH 592


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/564 (31%), Positives = 315/564 (55%), Gaps = 14/564 (2%)

Query: 82  VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFG 141
            + V    ++  +++  Y KC +M +A+K+    P  D   W +++SGF++N +      
Sbjct: 247 TFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVN 306

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSL-VSKMIHCLVYLCGYEEEVTVGNALITS 200
                +EL     +  ++  +L+A   S LSL + +  H  V + G E ++ VGNAL+  
Sbjct: 307 ALV-DMELSGILPNNFTYASLLNA-SSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDM 364

Query: 201 YFKCG-SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259
           Y KC  ++++G K F  + + NVI+WT++I+G  ++   EE ++LF +M    + PNS T
Sbjct: 365 YMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFT 424

Query: 260 YLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319
             + + ACS ++++ + +++HG + K  +  D+ + +AL+D Y+  G  ++AW +     
Sbjct: 425 LSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMN 484

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLG 375
             D ++ T +     Q G  E A+++   M    +++D     + +SA  G+  ++T   
Sbjct: 485 HRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMET--- 541

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
            GKQ+H    KS F     V+N L++ YSKCG + D+ +VF  +   + VSWN +I+  A
Sbjct: 542 -GKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLA 600

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495
            +G    AL  +++M+L GV+P  VTFLSL+ ACS   L+N+G+++  SM + + I+P+ 
Sbjct: 601 SNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKL 660

Query: 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555
           +HY C+VD++GR G L EA   IE MP KPD ++++ LL AC++HG+  +G+  A +   
Sbjct: 661 DHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLE 720

Query: 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDK 615
             P  PA Y+L+A++Y  +G      K  K M+E G+ +     W+E++ +++ F   +K
Sbjct: 721 LDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFSAREK 780

Query: 616 MHPQADTIHGVLAELLRLMIDEGY 639
           +    D I+  L  L+  + + GY
Sbjct: 781 I--GNDEINEKLESLITEIKNRGY 802



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 140/465 (30%), Positives = 224/465 (48%), Gaps = 23/465 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LL  Y KC  +  A  LFD+MP RD VSW T++S   RN         F   L  G  
Sbjct: 55  NNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSG-- 112

Query: 153 QLDQASFTIILSACDRSELSL----VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              Q      LS+  RS  +L        IH  V   G E    +G  L+  Y KC  + 
Sbjct: 113 ---QCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTV 169

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
              K+   ++  +V++WT +IS LV+   + E L+L+VKM    I PN  T++  ++   
Sbjct: 170 EPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFV-KLLGMP 228

Query: 269 GLQALCE--GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
               L +  G+ +H  L    ++ +L +++A++ MY+KC  +EDA ++ +   + D    
Sbjct: 229 SFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLW 288

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
           T I+ GF QN    EA+   V M  +GI  +    +++L       SL LG+Q HS +I 
Sbjct: 289 TSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIM 348

Query: 387 SDFTSNPFVNNGLINMYSKCG-DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
                + +V N L++MY KC     + +K F  +A  N +SW S+IA FA HG   ++++
Sbjct: 349 VGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQ 408

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRISPRAEHYACV 501
           L+ EM+  GV+P   T  ++L ACS +  + +  +     +K+  ++      A     +
Sbjct: 409 LFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNA-----L 463

Query: 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           VD     G+  EA S I  M  + D++ +  L    +  GD EM 
Sbjct: 464 VDAYAGGGMADEAWSVIGMMNHR-DIITYTTLAARLNQQGDHEMA 507



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 150/585 (25%), Positives = 262/585 (44%), Gaps = 54/585 (9%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S  L   +  G F  G  +HAS +K     ++          V+  +L+  Y KC
Sbjct: 116 NEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNH----------VLGTTLVDLYTKC 165

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D      KL   +   D VSW TM+S  +   ++      + + +E G Y  ++ +F  +
Sbjct: 166 DCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYP-NEFTFVKL 224

Query: 163 LSACDRSELSL---VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
           L     S L L     K++H  +   G E  + +  A+I  Y KC       KV  +   
Sbjct: 225 LGM--PSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPK 282

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            +V  WT++ISG VQN    E +   V M L  I PN+ TY S + A S + +L  G Q 
Sbjct: 283 YDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQF 342

Query: 280 HGILWKLALQSDLCIESALMDMYSKCG-SVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           H  +  + L+ D+ + +AL+DMY KC  +  +  + F      + +S T ++ GFA++GF
Sbjct: 343 HSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGF 402

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           EEE++QLF +M  AG++ +   +S +LG      S+   K++H  IIK+    +  V N 
Sbjct: 403 EEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNA 462

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++ Y+  G  +++  V   M  R+ +++ ++ A   + G+   AL +   M  + V+  
Sbjct: 463 LVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMD 522

Query: 459 DVTFLSLLHACSHVGLVNKGMEF-------------------------LKSMTEVHRI-- 491
           + +  S + A + +G++  G +                            SM + +R+  
Sbjct: 523 EFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFK 582

Query: 492 ---SPRAEHYACVVDMVGRAGLLIEARSFIERMP---VKPDVLVWQALLGACSIHGDSEM 545
               P    +  ++  +   GL+ +A S  + M    VKPD + + +L+ ACS       
Sbjct: 583 DITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQ 642

Query: 546 GK---YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
           G    Y+ EK +   P     Y+ + ++    GR +E    I+ M
Sbjct: 643 GLDYFYSMEKTYHITPKLDH-YVCLVDLLGRGGRLEEAMGVIETM 686



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 125/438 (28%), Positives = 218/438 (49%), Gaps = 25/438 (5%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +LS C+   L      +H  +   G + ++ + N L+  Y KC      R +F EM  R+
Sbjct: 23  VLSLCNSQTLK-EGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRD 81

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WT ++S   +N+ + E L+LF  M      PN  T  S++ +CS L     G +IH 
Sbjct: 82  VVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHA 141

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + KL L+ +  + + L+D+Y+KC    +  ++  F ++ D VS T ++    +     E
Sbjct: 142 SVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSE 201

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ----IHSLIIKSDFTSNPFVNN 397
           A+QL+VKM++AGI   PN  + V  + G+ + LGLGK     +HS +I      N  +  
Sbjct: 202 ALQLYVKMIEAGIY--PNEFTFV-KLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKT 258

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            +I MY+KC  +ED+IKV S+  P+  V  W S+I+ F ++    +A+    +M+L G+ 
Sbjct: 259 AIICMYAKCRRMEDAIKV-SQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGIL 317

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA--CVVDMVGRAGLLIEA 514
           P + T+ SLL+A S V  +  G +F    + V  +    + Y    +VDM  +       
Sbjct: 318 PNNFTYASLLNASSSVLSLELGEQF---HSRVIMVGLEGDIYVGNALVDMYMKCSHTTTN 374

Query: 515 RSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572
                R    P+V+ W +L+   + HG  +  +  +A  +    QP+S   + L   + +
Sbjct: 375 GVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNS---FTLSTILGA 431

Query: 573 CSGRWKERAKAIKRMKEM 590
           CS     + K+I + K++
Sbjct: 432 CS-----KMKSIIQTKKL 444


>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 878

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 304/571 (53%), Gaps = 21/571 (3%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           +LL  S+  G    G ++H+S I          V  +P   V+  SL+ FY     M +A
Sbjct: 229 KLLGASSFLG-LEFGKTIHSSII----------VRGIPLNVVLKTSLVYFYSHFSIMEDA 277

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
           V++ +    +D   W ++VSGF+RN       G F     LG +  +  +++ ILS C  
Sbjct: 278 VRVLNSTGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHP-NNFTYSAILSLCSA 336

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS-SGRKVFGEMRVRNVITWTA 227
                + K IH      G+E+   VGNAL++ Y KC +S     +VFG M   NV++WT 
Sbjct: 337 VRSLDLGKQIHSQTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTT 396

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I GLV +   ++   L ++M    + PN +T    + ACS L+ L    +IHG L +  
Sbjct: 397 LILGLVDHGFEQDCFGLLMEMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRH 456

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           +  ++ + ++L+D Y+  G V+ AW +    +  D ++ T ++  F + G  E A+ +  
Sbjct: 457 VDGEMIVGNSLVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVIN 516

Query: 348 KMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            M   GI +D    P  +SA   +   +T    GK +H   +KS F+    V N L++MY
Sbjct: 517 HMYGDGIRMDQLSLPGFISASANLGAHET----GKHLHCYSVKSGFSGAVSVLNSLVDMY 572

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SKCG LED+ KVF  +A  + VSWN +++  A  G    AL  +EEM+++G EP  VTFL
Sbjct: 573 SKCGSLEDAKKVFEEIAMPDVVSWNGLVSGLASIGRISSALSAFEEMRMKGTEPDSVTFL 632

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            LL ACS   L   G+E+ +SM  +H + P+ EHY  +V ++GRAG L EA   +E M +
Sbjct: 633 ILLSACSKGRLTEMGLEYFQSMKTIHNMEPQIEHYVHLVGILGRAGRLEEATGVVETMHL 692

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           KP+ ++++ LL AC  HG+  +G+  A K     P  PA YIL+A++Y  SG+ +   K 
Sbjct: 693 KPNAMIFKTLLRACRYHGNLSLGEDMANKGLALAPSDPAFYILLADLYDESGKPELAQKT 752

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
              M E G+ K+   S +E++ +VHSFV +D
Sbjct: 753 RNLMSEKGLCKKLSKSTVEVQGKVHSFVGED 783



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 200/398 (50%), Gaps = 10/398 (2%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS YLK D + NA KLFD+MP R   +W  M+S F ++ EF      F+  +  G +
Sbjct: 61  NNLLSLYLKTDGIWNARKLFDEMPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIH 120

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             +    ++I S     +LS   + +H  V   G+E    VG++L   Y KCG     R+
Sbjct: 121 PNEFTFSSVIRSCAGLGDLSYGGR-VHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARE 179

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  ++  + I+WT +IS LV  + + E L+ + +M    + PN  T++  ++  S    
Sbjct: 180 LFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPPNEFTFV-KLLGASSFLG 238

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ IH  +    +  ++ ++++L+  YS    +EDA ++     E D    T ++ G
Sbjct: 239 LEFGKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSG 298

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F +N   +EA+  F++M   G+  +    SA+L +     SL LGKQIHS  IK  F  +
Sbjct: 299 FVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDS 358

Query: 393 PFVNNGLINMYSKCGDLE-DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             V N L++MY KC   E ++ +VF  M   N VSW ++I     HG       L  EM 
Sbjct: 359 TDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLMEMV 418

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
              VEP  VT   +L ACS        +++L+ + E+H
Sbjct: 419 KREVEPNFVTLSGVLRACSK-------LKYLRLVLEIH 449



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 197/402 (49%), Gaps = 10/402 (2%)

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
           F  R+ EL   Q    S   ILS C+ S  S +   IHC V   G  E + + N L++ Y
Sbjct: 12  FLSRTNELSNLQ---QSCIRILSFCESSS-SRIGLHIHCPVIKFGLLENLDLCNNLLSLY 67

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            K     + RK+F EM  R V  WT +IS   ++Q +   L LF +M    I+PN  T+ 
Sbjct: 68  LKTDGIWNARKLFDEMPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFS 127

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + +C+GL  L  G ++HG + K   + +  + S+L D+YSKCG +++A ++F   +  
Sbjct: 128 SVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNA 187

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQ 379
           D +S T+++          EA++ + +M+KAG  + PN  + V  + G  + LGL  GK 
Sbjct: 188 DTISWTMMISSLVGARKWSEALRFYSEMIKAG--VPPNEFTFV-KLLGASSFLGLEFGKT 244

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IHS II      N  +   L+  YS    +ED+++V +    ++   W S+++ F R+  
Sbjct: 245 IHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLR 304

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+  + EM+  G+ P + T+ ++L  CS V  ++ G +      +V          A
Sbjct: 305 AKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFEDSTDVGNA 364

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            V   +  +   +EA      M + P+V+ W  L+     HG
Sbjct: 365 LVSMYMKCSASEVEASRVFGAM-ISPNVVSWTTLILGLVDHG 405



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 151/607 (24%), Positives = 274/607 (45%), Gaps = 50/607 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           N    S ++   A  G    G  +H S +KT FE             +V+ +SL   Y K
Sbjct: 122 NEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFE-----------GNSVVGSSLTDLYSK 170

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
           C +++ A +LF  +   DT+SW  M+S  +   ++     F+   ++ G    ++ +F  
Sbjct: 171 CGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPP-NEFTFVK 229

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L A     L    K IH  + + G    V +  +L+  Y          +V      ++
Sbjct: 230 LLGASSFLGLEF-GKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQD 288

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V  WT+V+SG V+N   +E +  F++M    ++PN+ TY + +  CS +++L  G+QIH 
Sbjct: 289 VFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHS 348

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVE-DAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
              K+  +    + +AL+ MY KC + E +A ++F      + VS T +++G   +GFE+
Sbjct: 349 QTIKVGFEDSTDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQ 408

Query: 341 EAMQLFVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +   L ++MVK   E++PN V  S VL        L L  +IH  +++        V N 
Sbjct: 409 DCFGLLMEMVKR--EVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVDGEMIVGNS 466

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           L++ Y+  G ++ +  V   M  R+++++ S++  F   G    AL +   M  +G+   
Sbjct: 467 LVDAYASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYGDGIRMD 526

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
            ++    + A +++G    G + L   +     S        +VDM  + G L +A+   
Sbjct: 527 QLSLPGFISASANLGAHETG-KHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVF 585

Query: 519 ERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           E + + PDV+ W  L+   +  G   S +  +   ++   +PDS    IL++   +CS  
Sbjct: 586 EEIAM-PDVVSWNGLVSGLASIGRISSALSAFEEMRMKGTEPDSVTFLILLS---ACSK- 640

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQAD-TIH--GVLAELLRL 633
                    R+ EMG++      + +  K +H+      M PQ +  +H  G+L    RL
Sbjct: 641 --------GRLTEMGLE------YFQSMKTIHN------MEPQIEHYVHLVGILGRAGRL 680

Query: 634 MIDEGYV 640
               G V
Sbjct: 681 EEATGVV 687


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 310/555 (55%), Gaps = 26/555 (4%)

Query: 59  HFH-LGPSLHA-SFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           HFH  G  LH  +FI           Y  P   ++ NS++S Y K   + +A ++FD MP
Sbjct: 80  HFHAFGTQLHCLAFIT--------GSYTDP---IVSNSIISMYAKFFDIESARQVFDTMP 128

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL--- 173
            RDT++WN+M++ +L+NG         K    LGF    +   +++ S C R E+ L   
Sbjct: 129 HRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPKPELLASMV-SMCGR-EMDLGWR 186

Query: 174 VSKMIHCLVYLCG---YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
           + + IH LV + G    +  V +  A +  YF+CG S   R VF EM V+N ++WTAVIS
Sbjct: 187 IGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVIS 246

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
           G   NQ Y+  L  + +M +  ++PN +T ++ + AC+    +  G++IHG  ++    S
Sbjct: 247 GCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDS 306

Query: 291 DLCIESALMDMYSKCG-SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
                 AL+ +Y +CG S+  A +IFE +   D V  + I+  +A+ G  ++A++LF KM
Sbjct: 307 CHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKM 366

Query: 350 VKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
                E +PN V+  AV+      +S   G  IH  I+K     + FV N LINMY+KCG
Sbjct: 367 RTE--ETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCG 424

Query: 408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467
            L+DS K+F  M  R+SV+WNSMI+A+  HG G +AL+ + EMK  GV+   VTFL++L 
Sbjct: 425 SLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLS 484

Query: 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV 527
           AC+H GLV +G +  + +     I    EHYAC++D+ GR+G L +A   +  MP+KP  
Sbjct: 485 ACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSA 544

Query: 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
            +W +L+ +C +HG  ++ +  + +L  ++P++ A Y L++ I++  GRW +  +  + M
Sbjct: 545 RIWSSLVSSCKLHGRLDIAESLSSQLIRSEPNNAASYTLLSMIHAEKGRWLDIEQVRETM 604

Query: 588 KEMGVDKETGISWIE 602
           K   + K  G S IE
Sbjct: 605 KLQRLRKCYGFSRIE 619



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 206/427 (48%), Gaps = 23/427 (5%)

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEV 191
           G +     FF + L    +  +   F +  ++ AC  +        +HCL ++ G   + 
Sbjct: 43  GLYHQTLQFFTQ-LHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDP 101

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH-L 250
            V N++I+ Y K     S R+VF  M  R+ ITW ++I+  +QN L  E L++    + L
Sbjct: 102 IVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFL 161

Query: 251 GLINPNSLTYLSSVMACSGLQ---ALCEGRQIHGIL---WKLALQSDLCIESALMDMYSK 304
           G +    L  L+S+++  G +       GRQIHG++    ++ +Q  + + +A +D Y +
Sbjct: 162 GFLPKPEL--LASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFR 219

Query: 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS-- 362
           CG    A  +F+  E  + VS T ++ G A N   + A+  + +M   G  + PN V+  
Sbjct: 220 CGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEG--VSPNRVTLI 277

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD-LEDSIKVFSRMAP 421
           A+L        +  GK+IH    +  F S    +  LI +Y +CG  L  + ++F   + 
Sbjct: 278 ALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSL 337

Query: 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481
           R+ V W+S+I ++AR G   KAL+L+ +M+ E  EP  VT L+++ AC+++     G   
Sbjct: 338 RDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVI 397

Query: 482 LKSMTEVHRISPRAEHYAC--VVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
                 + +       + C  +++M  + G L ++R     MP + D + W +++ A  +
Sbjct: 398 ---HGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSR-DSVTWNSMISAYGL 453

Query: 540 HGDSEMG 546
           HG  E  
Sbjct: 454 HGYGEQA 460



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 178/361 (49%), Gaps = 25/361 (6%)

Query: 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL--SSVMACSGLQALCEGRQIHGILWKL 286
           I  LV   LY + L+ F ++H    + NS+ ++  S + ACS       G Q+H + +  
Sbjct: 36  IKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFIT 95

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              +D  + ++++ MY+K   +E A Q+F+     D ++   ++  + QNG   EA+Q+ 
Sbjct: 96  GSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQML 155

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLG--LGKQIHSLII---KSDFTSNPFVNNGLIN 401
                 G    P ++++++ + G +  LG  +G+QIH L++   +     + F++   ++
Sbjct: 156 KDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVD 215

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
            Y +CGD   +  VF  M  +N VSW ++I+  A + +   AL  Y EM++EGV P  VT
Sbjct: 216 FYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVT 275

Query: 462 FLSLLHACSHVGLVNKGME-----FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
            ++LL AC+  G V  G E     F +     H  SP   +  C     G++  L  A  
Sbjct: 276 LIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYC---ECGQS--LHLAER 330

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF---LAQPDSPAPYILMANIYSC 573
             E   ++ DV++W +++G+ +  G+S+     A KLF     +   P    L+A I +C
Sbjct: 331 IFEGSSLR-DVVLWSSIIGSYARRGESD----KALKLFNKMRTEETEPNYVTLLAVISAC 385

Query: 574 S 574
           +
Sbjct: 386 T 386


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 186/577 (32%), Positives = 306/577 (53%), Gaps = 40/577 (6%)

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A+ +F  +   + +SWNTM+ G   + +       +   + LG    +  +F  +  +C 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGL-SPNSYTFPFLFKSCA 89

Query: 168 RSELSLVSKMIHCLVYLCGY-------------------------------EEEVTVGNA 196
           +S+ +   K IH  +   G                                  +V    A
Sbjct: 90  KSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTA 149

Query: 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN 256
           +IT Y   G+    +K+F E+ +++V++W A+ISG  +   Y+E L+LF +M    + P+
Sbjct: 150 MITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPD 209

Query: 257 SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             T  + +  C+    +  GRQIH  +      S+L + +AL+D+YSKCG +E A  +FE
Sbjct: 210 ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 317 FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG- 375
             +  D +S   ++ G+A     +EA+ +F +M+K G    PN V+ +L +      LG 
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET--PNDVT-MLSILPACAHLGA 326

Query: 376 --LGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             +G+ IH  I K      +N  +   LI+MY+KCG++E + +VF  +  ++  S N+MI
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             FA HG    A +L   MK +G+EP D+TF+ LL ACSH GL + G +  KSMT  +RI
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            P+ EHY C++D++GR+GL  EA   I  M ++PD ++W +LL AC IH + E+G+  A+
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQ 506

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
           KL   +P +P  Y+L++NIY+ S RW + A+    + + G+ K  G S IEI+  VH F+
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           + DK HPQ   I+ +L E+  L+ + G+V +   +L 
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQ 603



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 207/424 (48%), Gaps = 20/424 (4%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNA--TVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
            H+  SL + + +     D   V++  +    V + ++++ Y     M  A K+FD++P+
Sbjct: 113 LHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPI 172

Query: 118 RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
           +D VSWN M+SG+   G +      F   +++   + D+++   +LS C  S    + + 
Sbjct: 173 KDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV-KPDESTMATVLSTCTHSGNVELGRQ 231

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH  +   G+   + + NALI  Y KCG       +F  ++ ++VI+W  +I G      
Sbjct: 232 IHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINH 291

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK--LALQSDLCIE 295
           ++E L +F +M      PN +T LS + AC+ L A+  GR IH  + K    + ++  ++
Sbjct: 292 HKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQ 351

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+DMY+KCG++E A Q+F+        S   ++ GFA +G  + A  L  +M K GIE
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQI-HSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS 412
            D      +L          LG++I  S+ +  D+   P + +   +I++  + G  +++
Sbjct: 412 PDDITFVGLLSACSHAGLSDLGRKIFKSMTL--DYRIEPKLEHYGCMIDLLGRSGLFKEA 469

Query: 413 IKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYE-----EMKLEGVEPTDVTFLSLL 466
            ++ + M    + V W S++ A   H N    LEL E      MK+E   P     LS +
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIHKN----LELGELIAQKLMKIEPKNPGSYVLLSNI 525

Query: 467 HACS 470
           +A S
Sbjct: 526 YATS 529



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 12/230 (5%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  +L   A  G   +G  +H         + ++ +  +   T +  SL+  Y KC
Sbjct: 310 NDVTMLSILPACAHLGAIDIGRWIHV--------YIDKKLKGIITNTSLQTSLIDMYAKC 361

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A ++FD +  +   S N M+ GF  +G  D  F    R  + G  + D  +F  +
Sbjct: 362 GNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGI-EPDDITFVGL 420

Query: 163 LSACDRSELS-LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR- 220
           LSAC  + LS L  K+   +      E ++     +I    + G      ++   M +  
Sbjct: 421 LSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEP 480

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVK-MHLGLINPNSLTYLSSVMACSG 269
           + + W +++     ++  E G  +  K M +   NP S   LS++ A S 
Sbjct: 481 DGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSA 530


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/612 (30%), Positives = 311/612 (50%), Gaps = 12/612 (1%)

Query: 32  PTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVI 91
           P S  +   +D    ++ LL + A   +  +G S+HA  I T +    ++ Y +      
Sbjct: 22  PKSKKTPFPIDR---LNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQI------ 72

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG-FGFFKRSLELG 150
            NSL++ Y+KC +   A KLFD MP R+ VSW  M+ G+ +N  FD      FK     G
Sbjct: 73  -NSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGY-QNSGFDFEVLKLFKSMFFSG 130

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + ++   T++  +C  S      K  H      G      V N L+  Y  C  +   
Sbjct: 131 ESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEA 190

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +V  ++   ++  +++ +SG ++   ++EGL +  K        N+LTYLSS+   S L
Sbjct: 191 IRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNL 250

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
           + L    Q+H  + +    +++    AL++MY KCG V  A ++F+     +    T I+
Sbjct: 251 RDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIM 310

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
             + Q+   EEA+ LF KM    +  +    + +L      + L  G  +H L++KS + 
Sbjct: 311 DAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYR 370

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           ++  V N L+NMY+K G +ED+ K FS M  R+ V+WN+MI+  + HG G +ALE ++ M
Sbjct: 371 NHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRM 430

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              G  P  +TF+ +L ACSH+G V +G+ +   + +   + P  +HY C+V ++ +AG+
Sbjct: 431 IFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGM 490

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
             +A  F+   P++ DV+ W+ LL AC +  +  +GK  AE      P+    Y+L++NI
Sbjct: 491 FKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNI 550

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
           ++ S  W+  AK    M   GV KE G+SWI I  Q H F+ +D  HP+   I+  + E+
Sbjct: 551 HAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEV 610

Query: 631 LRLMIDEGYVPN 642
           +  +   GY P+
Sbjct: 611 MSKIKPLGYSPD 622


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/576 (32%), Positives = 313/576 (54%), Gaps = 18/576 (3%)

Query: 78  DNQNVYN-VPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           + + V+N VP+  V ++  +++ Y + +++ +A+ LFD+MP+RD VSWN+M+SG +  G+
Sbjct: 53  EAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGD 112

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVG 194
            +     F    E         S+T +++ C RS ++    ++ + +       ++    
Sbjct: 113 MNTAVKLFDEMPERSV-----VSWTAMVNGCFRSGKVDQAERLFYQMPV-----KDTAAW 162

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N+++  Y + G      K+F +M  +NVI+WT +I GL QN+   E L LF  M    I 
Sbjct: 163 NSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIK 222

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
             S  +   + AC+   A   G Q+HG++ KL    +  + ++L+  Y+ C  + D+ ++
Sbjct: 223 STSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKV 282

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+          T +L G++ N   E+A+ +F  M++  I  + +  ++ L       +L
Sbjct: 283 FDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTL 342

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
             GK++H + +K    ++ FV N L+ MYS  G++ D++ VF ++  ++ VSWNS+I   
Sbjct: 343 DWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGC 402

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISP 493
           A+HG G  A  ++ +M     EP ++TF  LL ACSH G + KG +    M+  ++ I  
Sbjct: 403 AQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDR 462

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
           + +HY C+VD++GR G L EA   IERM VKP+ +VW ALL AC +H D + G+ AA  +
Sbjct: 463 KIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAI 522

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
           F     S A Y+L++NIY+ +GRW   +K   +MK+ G+ K+ G SW+ I  + H F   
Sbjct: 523 FNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSG 582

Query: 614 DKMHPQADTIHGVLAELLRLMIDE-GYVPNKRFILH 648
           D+  P    I+  L E LR  + E GY P+ R  LH
Sbjct: 583 DQ--PHCSRIYEKL-EFLREKLKELGYAPDYRSALH 615



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468
           ++++ +VF+++   +   +  MI  + R      AL L++EM +  V    V++ S++  
Sbjct: 51  IDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDV----VSWNSMISG 106

Query: 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
           C   G +N  ++    M E   +S     +  +V+   R+G + +A     +MPVK D  
Sbjct: 107 CVECGDMNTAVKLFDEMPERSVVS-----WTAMVNGCFRSGKVDQAERLFYQMPVK-DTA 160

Query: 529 VWQALLGACSIHGDSEMGKY-AAEKLFLAQP 558
            W ++     +HG  + GK   A KLF   P
Sbjct: 161 AWNSM-----VHGYLQFGKVDDALKLFKQMP 186


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 287/498 (57%), Gaps = 2/498 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+FY +  ++  A  LFD MP R  V+WNT++ G  R+    +    F R    G  
Sbjct: 98  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 157

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               +S + +L AC R E +     +H +  + G+   V VG AL+  Y KC    + ++
Sbjct: 158 P-TASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQ 216

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  +NV T+TA+++G V ++   + + L  +M    + PN +TY S + + +  + 
Sbjct: 217 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 276

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  + K  L+ D  + SAL+ MYSKCG +ED  ++       D VS   ++ G
Sbjct: 277 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISG 336

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +  G  +EA Q F++M + G ++D    ++VL   G  +SL  G+Q+H+LI+K  + S 
Sbjct: 337 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 396

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY++ G + +S  VF  M   N VSWNS+++  A+HG+G + +E++E+M+ 
Sbjct: 397 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRR 456

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVGRAGLL 511
             V+P  +TFLS+L ACSHVGLV+KG+E+   M +  + +  R EHYAC+VD++GRAG L
Sbjct: 457 LHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYL 516

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   I  MP+KP   V++ALL AC IHG+ E+    +++L    P   + ++ ++N +
Sbjct: 517 NEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAF 576

Query: 572 SCSGRWKERAKAIKRMKE 589
           +  GRW   A+  + M E
Sbjct: 577 AGDGRWGNAAEIREAMSE 594



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 179/360 (49%), Gaps = 14/360 (3%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL--RNGEFDMGFGFFKR 145
           + V+  +L+  Y KC  +  A ++F +M  ++  ++  +V+GF+  R     M      R
Sbjct: 194 SVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAM---LLVR 250

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +E      +  +++ +LS+    E     K +HC V   G E +  V +AL+T Y KCG
Sbjct: 251 EMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCG 310

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                 KV   +  ++ +++ +VISGL      +E  + F++M     + +  T+ S + 
Sbjct: 311 ILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLK 370

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A     +L EGRQ+H ++ K+   S + ++++L+ MY++ G++ ++  +F   E  + VS
Sbjct: 371 AIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVS 430

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHS 382
              ++ G AQ+G  +E +++F +M +  + + P+ ++  L V    + +GL   G +  +
Sbjct: 431 WNSLMSGCAQHGHGKEVVEMFEQMRR--LHVQPDHIT-FLSVLTACSHVGLVDKGLEYFN 487

Query: 383 LIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           L+    +       +   ++++  + G L ++  + + M  +   S + ++++A   HGN
Sbjct: 488 LMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGN 547



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN F    L+  Y +   L ++  +F +M  R +V+WN++I   AR      A+  + 
Sbjct: 90  LASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFA 149

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M   GV PT  +  S+L AC  +     G   L S+  +H           +VDM  + 
Sbjct: 150 RMARAGVSPTASSVSSVLVACVRLEDAAAGAT-LHSVGLMHGFCASVVVGTALVDMYAKC 208

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLG 535
             L  A+     M  K +V  + AL+ 
Sbjct: 209 HHLGAAQQVFREMEEK-NVATFTALVA 234


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 281/509 (55%), Gaps = 2/509 (0%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL 154
           L+ FY+K  +  NA K+FD MP R+ VSW   +SG+ +NG +      F +    G  + 
Sbjct: 78  LIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGV-RA 136

Query: 155 DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
           +Q ++  +L AC           IH  +    +   + V +AL+  + KCG+    R +F
Sbjct: 137 NQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLF 196

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
             M  R+V++W AVI G       ++  ++F  M    + P+  T  S + A S    L 
Sbjct: 197 ETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLI 256

Query: 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
           +  QIHGI+ +L   S + +  +L+D Y+K   ++ A  +++   + D +S T I+ G+A
Sbjct: 257 KVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYA 316

Query: 335 QN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           +   +  EA+ LF  M    +EID      +L V     SL +G+QIH+L IK   + + 
Sbjct: 317 RKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDV 376

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
              N L++MY+K G++ED+ + F  M  +N +SW S+I  + +HG G +A+ LY++M+ E
Sbjct: 377 ATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYE 436

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G++P D+TFLSLL ACSH GL  +G E   +M   + I PRAEHY+C++D+  R G L E
Sbjct: 437 GLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEE 496

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A + I +M +KP+  +W A+LGACSI+G   +G+ AA  L    P++ A Y+++A IY+ 
Sbjct: 497 AYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAA 556

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIE 602
           SG W +  +    M+   + K  G S I+
Sbjct: 557 SGSWDKACRMRNLMEYRSLKKIPGYSIIQ 585



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/391 (29%), Positives = 213/391 (54%), Gaps = 5/391 (1%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
            L  + +  IL  C  +E      +IH  +   G++  + +   LI  Y K G + + RK
Sbjct: 34  HLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARK 93

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  RNV++WTA ISG  +N  Y++ L +F +M    +  N  TY S + AC+GL+ 
Sbjct: 94  VFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRC 153

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G QIHG + K     +L ++SAL+D++SKCG++EDA  +FE   E D VS   ++ G
Sbjct: 154 LERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGG 213

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           +A   F +++ ++F  M+  G+  D   + +VL       +L    QIH +II+  F S+
Sbjct: 214 YAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSH 273

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN-GFKALELYEEMK 451
             +N  LI+ Y+K   ++ +  ++  M  ++ +S+ +++  +AR  +   +AL+L+++M+
Sbjct: 274 IDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQ 333

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
              +E  DVTF ++L+ C+ +  ++ G + + ++   ++ S        +VDM  ++G +
Sbjct: 334 HIFMEIDDVTFCTMLNVCADIASLSIGRQ-IHALAIKYKPSYDVATGNALVDMYAKSGEI 392

Query: 512 IEA-RSFIERMPVKPDVLVWQALLGACSIHG 541
            +A R+F E    + +V+ W +L+     HG
Sbjct: 393 EDATRAFYEMK--EKNVISWTSLITGYGKHG 421



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 180/354 (50%), Gaps = 8/354 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + ++L+  + KC  M +A  LF+ M  RD VSWN ++ G+      D  F  F   +  G
Sbjct: 175 VQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEG 234

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               D  +   +L A  R+   +    IH ++   G+   + +  +LI +Y K     S 
Sbjct: 235 VTP-DCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSA 293

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLY-EEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             ++  M  ++VI++TA+++G  +   Y  E L LF  M    +  + +T+ + +  C+ 
Sbjct: 294 SALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCAD 353

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           + +L  GRQIH +  K     D+   +AL+DMY+K G +EDA + F   +E + +S T +
Sbjct: 354 IASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSL 413

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLIIK 386
           + G+ ++G+  EA+ L+ KM   G++  PN ++ +  +F    S   G+     +++I K
Sbjct: 414 ITGYGKHGYGHEAIALYKKMEYEGLK--PNDITFLSLLFACSHSGLTGEGWECFNNMITK 471

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
            +        + +I+++++ G LE++  +  +M  + NS  W +++ A + +G+
Sbjct: 472 YNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGH 525



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 116/219 (52%)

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           L + +S  Y+  +  C   + L +G  IH  + +    S+L + + L+  Y K G   +A
Sbjct: 32  LTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINA 91

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+   E + VS T  + G+A+NG  ++A+ +F +M +AG+  +     +VL      
Sbjct: 92  RKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGL 151

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
             L  G QIH  I K+ F  N FV + L++++SKCG++ED+  +F  M+ R+ VSWN++I
Sbjct: 152 RCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVI 211

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
             +A       +  ++  M  EGV P   T  S+L A S
Sbjct: 212 GGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASS 250


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 189/569 (33%), Positives = 308/569 (54%), Gaps = 22/569 (3%)

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMR--------DTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           L+  Y K   + +A  LFD             ++   NTM+  +   G        +   
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 147 LELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
             +G   ++  ++  +L  C     ++  +++H  V   G+  ++ V  AL+  Y KCG 
Sbjct: 124 QRMGV-GVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGE 182

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266
                +VF  M +R+V+ WTA+I+   Q +   + L LF KM       + +T +S    
Sbjct: 183 IGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAIS---V 239

Query: 267 CSGLQALCEGR---QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
            S +  L +GR    +HG         D+ + ++++ MY+KCG+VE A  +F+  EE +G
Sbjct: 240 ASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNG 299

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIH 381
           +S   +L G+ QNG   +A+ LF +M  +  E DPN V+A++ V       S  LG+++H
Sbjct: 300 ISWNSMLSGYTQNGRPTDALSLFNQMQAS--ECDPNPVTALIMVSACSYLGSKHLGRKLH 357

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS--RMAPRNSVSWNSMIAAFARHGN 439
           + +I S    +  + N +++MY KCGDL+ ++++F+   +  R+  SWN +I+ +  HG+
Sbjct: 358 NFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGH 417

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G +ALEL+  M++EGVEP D+TF S+L ACSH GL+++G +    MT++  + P  +HYA
Sbjct: 418 GKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYA 476

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VDM+GRAG L EA   I+++P +P   VW ALL AC IHG++E+G+ AA  LF  +P+
Sbjct: 477 CMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPE 536

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
               Y+LM+NIY+ S +WKE     + MK  G+ K    S IE   +VH F   D+  P 
Sbjct: 537 HTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPY 596

Query: 620 ADTIHGVLAELLRLMIDEGYVPNKRFILH 648
              ++  +  L   M   GYVP+   +LH
Sbjct: 597 YREVYRKVESLAIEMKMVGYVPDLSCVLH 625



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 176/349 (50%), Gaps = 4/349 (1%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           +L+  Y KC ++ +A ++FD M +RD V W  M++ + +          F++  E GF  
Sbjct: 172 ALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLG 231

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
            D+ +   + SA  +     ++  +H    L G+  +V+VGN+++  Y KCG+    R V
Sbjct: 232 -DEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLV 290

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F  M  RN I+W +++SG  QN    + L LF +M     +PN +T L  V ACS L + 
Sbjct: 291 FDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSK 350

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--ELDGVSMTVILV 331
             GR++H  +    +  D  + +A+MDMY KCG ++ A ++F   E  E D  S  V++ 
Sbjct: 351 HLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLIS 410

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
           G+  +G  +EA++LF +M   G+E +    +++L        +  G++  + + K     
Sbjct: 411 GYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRP 470

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
                  +++M  + G L ++ ++  ++  R S   W +++ A   HGN
Sbjct: 471 EMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGN 519



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NS++  Y KC  +  A  +FD M  R+ +SWN+M+SG+ +NG        F + ++  
Sbjct: 270 VGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQ-MQAS 328

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               +  +  I++SAC       + + +H  V     + + T+ NA++  Y KCG   + 
Sbjct: 329 ECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTA 388

Query: 211 RKVFG--EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
            ++F   E+  R+V +W  +ISG   +   +E L+LF +M +  + PN +T+ S + ACS
Sbjct: 389 VEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACS 448

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
               + EGR+    + KL+++ ++   + ++DM  + G + +A+++ +
Sbjct: 449 HAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIK 496


>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera]
 gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 319/613 (52%), Gaps = 42/613 (6%)

Query: 18  SSLVSPFITKIIQDPTSSTS-KLVLDN-------YVDISRLLSISAKEGHFHLGPSLHAS 69
           S+ VS F  K    P  +TS +L+  N       Y  + R  + +    H   G +LHA 
Sbjct: 4   STGVSQFWAKTTSSPLKTTSFRLIFTNSTHDEDLYATLLRRFAETRDSQH---GRALHAK 60

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            IK   P  N    N        N +L+ Y KC  + +A KLFD  P R+ VSW+ +++G
Sbjct: 61  LIKG--PLHNSLFLN--------NHILNMYAKCGHLPHAHKLFDHFPHRNAVSWSVLIAG 110

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC-------DRSE------LSLVSK 176
           F+++         F +    G   +++ +    L AC       D +E            
Sbjct: 111 FVQHNRPSCALVLFSQMHAAGV-NINEFTLVSALHACSLYDNDSDNNEGYYYSYYLSRLY 169

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            ++  V   G+E  V + N  +T+  +    +   +VF   R ++V++W AV++GLVQ  
Sbjct: 170 QVYAFVVRLGFEWNVFLMNVFMTALIRSRKLAEALEVFEACRGKDVVSWNAVMAGLVQF- 228

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR---QIHGILWKLALQSDLC 293
              E    + +M    + P++  + S V+  SGL AL +G    Q+HG L K     ++C
Sbjct: 229 CCGEVPGFWRRMCCEGVKPDNFAF-SGVL--SGLAALGDGGMGVQVHGQLVKCGHGGEVC 285

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
           I ++L+DMY KCGS+E+  + FE   E D  +   +  G    G    A++L  +M ++G
Sbjct: 286 IGNSLVDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSG 345

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
           + ++   ++  L       SL  GK+ H L IK     +  V+N L++MY+KCG + D++
Sbjct: 346 VRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDAL 405

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           KVF  +  R+ VSW +MI  FA++G   KALE++E+M+ EG  P  +TF+ +L+ACS  G
Sbjct: 406 KVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGG 465

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL 533
           L+N+G E+  SM   H ISP  +HYAC+VDM+GRAG + EAR  I RMP +  VLVWQ L
Sbjct: 466 LINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQASVLVWQTL 525

Query: 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593
           LGAC +HGD E G  AA++         + Y++++N+++    WK      + M+   V 
Sbjct: 526 LGACRVHGDVETGLLAAKQALSLDKHDSSTYVVLSNMFADGRNWKGVGSLRELMETRDVK 585

Query: 594 KETGISWIEIEKQ 606
           K  G SWI++ K+
Sbjct: 586 KMPGSSWIQLNKR 598


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/588 (31%), Positives = 319/588 (54%), Gaps = 25/588 (4%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           ++ GH   G ++HA  I          +  + +   + NSL+S Y KC +M  A ++FD 
Sbjct: 120 SRAGHLRAGRAVHALAI----------LDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDV 169

Query: 115 MPMRDTVSWNTMVSGFLRNG---EFDMGFGFFKRSLELGFYQLDQASFTIILSACD-RSE 170
              RD VSWN++VSG++R G   E    F   +R    G   L+  +   ++  C  R +
Sbjct: 170 AEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRR----GGMGLNSFALGSVIKCCSGRGD 225

Query: 171 LSL-VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
            ++ +++ +H  V   G + +V + +A+I  Y K G+      +F  ++  NV+ +  +I
Sbjct: 226 GTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMI 285

Query: 230 SG------LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283
           +G      ++  ++  E L L+ ++    + P   T+ S + AC+    L  G+QIHG +
Sbjct: 286 AGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQV 345

Query: 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343
            K   Q D  I SAL+D+Y   G +ED ++ F  + + D V+ T ++ G  QN   E+A+
Sbjct: 346 IKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKAL 405

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            LF + + AG++ D   +S+V+           G+QI     KS F     + N  ++MY
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMY 465

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           ++ GD++ + + F  M   + VSW+++I+  A+HG    AL  ++EM    V P ++TFL
Sbjct: 466 ARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFL 525

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            +L ACSH GLV++G+ + ++M + + +SP  +H  CVVD++GRAG L +A +FI     
Sbjct: 526 GVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIF 585

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             D ++W++LL +C IH D E G+  A ++   +P S A Y+++ N+Y  +G     +K 
Sbjct: 586 HADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKT 645

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELL 631
              MK+ GV KE G+SWIE++  VHSFV  DK HP++  I+  L E+L
Sbjct: 646 RDLMKQRGVKKEPGLSWIELKCGVHSFVAGDKSHPESSAIYTKLEEML 693



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 230/467 (49%), Gaps = 16/467 (3%)

Query: 86  PNATV-IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           P A++ + N+LL+ Y +      A +L D+MP R+ VS+N ++  + R G   +      
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC 204
           R+   G   +D+ S+   L+AC R+      + +H L  L G    V V N+L++ Y KC
Sbjct: 99  RARRAGV-DVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKC 157

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSV 264
           G     R+VF     R+ ++W +++SG V+    EE +++F  M  G +  NS    S +
Sbjct: 158 GEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVI 217

Query: 265 MACSGL--QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
             CSG     +     +HG + K  L SD+ + SA++DMY+K G++ +A  +F   +E +
Sbjct: 218 KCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 323 GVSMTVILVGFAQN----GFE--EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL 376
            V    ++ GF +     G E   EA+ L+ ++   G++      S+VL    +   L  
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR 436
           GKQIH  +IK  F  + F+ + LI++Y   G +ED  + F      + V+W +M++   +
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEVHRISPR 494
           +    KAL L+ E    G++P   T  S+++AC+ + +   G  ++   + +   R +  
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
               +C V M  R+G +  A    + M    DV+ W A++   + HG
Sbjct: 458 GN--SC-VHMYARSGDVDAATRRFQEME-SHDVVSWSAVISCHAQHG 500



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 134/274 (48%), Gaps = 16/274 (5%)

Query: 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349
           + L + + L+  Y + G    A ++ +     + VS  +++  +++ G    +++   + 
Sbjct: 41  ASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARA 100

Query: 350 VKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409
            +AG+++D    +A L        L  G+ +H+L I    +S  FV+N L++MYSKCG++
Sbjct: 101 RRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEM 160

Query: 410 EDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469
            ++ +VF     R+ VSWNS+++ + R G   + + ++  M+  G+        S++  C
Sbjct: 161 GEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCC 220

Query: 470 SHVGLVNKGMEFLKSMTEVHRISPRAE------HYACVVDMVGRAGLLIEARSFIERMPV 523
           S      +G   +     VH    +A         + ++DM  + G L+EA +   R   
Sbjct: 221 S-----GRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALF-RSVQ 274

Query: 524 KPDVLVWQALL-GACSIHGDSEMGK-YAAEKLFL 555
           +P+V+++  ++ G C    ++ +GK  A+E L L
Sbjct: 275 EPNVVMFNTMIAGFCRT--ETVIGKEVASEALTL 306


>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g56570
 gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
 gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 611

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/596 (30%), Positives = 317/596 (53%), Gaps = 13/596 (2%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNV----YNVPNATVIWNSLLSFYLKCDQMRNAVK 110
           A+   F   P+   S ++      +QN     Y      ++  +L+  Y +   +  A  
Sbjct: 7   ARSNAFKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEKGLVEEARS 66

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LFD+MP RD V+W  M++G+  +      +  F   ++ G    ++ + + +L +C   +
Sbjct: 67  LFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQG-TSPNEFTLSSVLKSCRNMK 125

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SSGRKVFGEMRVRNVITWTAVI 229
           +     ++H +V   G E  + V NA++  Y  C  +  +   +F +++V+N +TWT +I
Sbjct: 126 VLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLI 185

Query: 230 SGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +G         GLK++ +M L    + P  +T   +V A + + ++  G+QIH  + K  
Sbjct: 186 TGFTHLGDGIGGLKMYKQMLLENAEVTPYCITI--AVRASASIDSVTTGKQIHASVIKRG 243

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
            QS+L + ++++D+Y +CG + +A   F   E+ D ++    L+   +     EA+ +F 
Sbjct: 244 FQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNT-LISELERSDSSEALLMFQ 302

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407
           +    G   +    ++++       +L  G+Q+H  I +  F  N  + N LI+MY+KCG
Sbjct: 303 RFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCG 362

Query: 408 DLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           ++ DS +VF  +  R N VSW SM+  +  HG G +A+EL+++M   G+ P  + F+++L
Sbjct: 363 NIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVL 422

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            AC H GLV KG+++   M   + I+P  + Y CVVD++GRAG + EA   +ERMP KPD
Sbjct: 423 SACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPD 482

Query: 527 VLVWQALLGACSIHGDSEM-GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585
              W A+LGAC  H  + +  + AA K+   +P     Y++++ IY+  G+W + A+  K
Sbjct: 483 ESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRK 542

Query: 586 RMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
            M+ MG  KE G+SWI +E QV SF V DKM P A +++ VL  L+    + GYVP
Sbjct: 543 MMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVP 598


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 308/559 (55%), Gaps = 50/559 (8%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           N+++  Y +   + +A K+FD++P   R    WN MVSG+ +                  
Sbjct: 134 NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWK------------------ 175

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
           +    QA +   +                        E  V    A++T Y K     + 
Sbjct: 176 WESEGQAQWLFDVMP----------------------ERNVITWTAMVTGYAKVKDLEAA 213

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R+ F  M  R+V++W A++SG  QN L EE L+LF +M    I P+  T+++ + ACS  
Sbjct: 214 RRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSR 273

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
              C    +   L +  +Q +  + +AL+DMY+K G ++ A ++F      + V+   ++
Sbjct: 274 GDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMI 333

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G+AQNG    A++LF +M+ A  ++ P+ V+  +V+   G   +L LG  +   + ++ 
Sbjct: 334 AGYAQNGQSAMAIELFKEMITAK-KLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQ 392

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
              +   +N +I MYS+CG +ED+ +VF  MA R+ VS+N++I+ FA HG+G +A+ L  
Sbjct: 393 IKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMS 452

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            MK  G+EP  VTF+ +L ACSH GL+ +G +  +S+ +     P  +HYAC+VD++GR 
Sbjct: 453 TMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRV 507

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L +A+  +ERMP++P   V+ +LL A  IH   E+G+ AA KLF  +PD+   +IL++
Sbjct: 508 GELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLS 567

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +GRWK+  +  + MK+ GV K TG SW+E   ++H F+V D+ H ++D I+ +L 
Sbjct: 568 NIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLI 627

Query: 629 ELLRLMIDEGYVPNKRFIL 647
           EL + M + GY+ +K  +L
Sbjct: 628 ELRKKMREAGYIADKSCVL 646



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 178/343 (51%), Gaps = 19/343 (5%)

Query: 85  VPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFF 143
           +P   VI W ++++ Y K   +  A + FD MP R  VSWN M+SG+ +NG  +     F
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248

Query: 144 KRSLELGFYQLDQASFTIILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
              +  G  + D+ ++  ++SAC  R +  L + ++  L +    +    V  AL+  Y 
Sbjct: 249 DEMVNAGI-EPDETTWVTVISACSSRGDPCLAASLVRTL-HQKRIQLNCFVRTALLDMYA 306

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG-LINPNSLTYL 261
           K G   S RK+F  M  RNV+TW ++I+G  QN      ++LF +M     + P+ +T +
Sbjct: 307 KFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV 366

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S + AC  L AL  G  +   L +  ++  +   +A++ MYS+CGS+EDA ++F+     
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GK 378
           D VS   ++ GFA +G   EA+ L   M + GIE  P+ V+  +GV    +  GL   G+
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE--PDRVT-FIGVLTACSHAGLLEEGR 483

Query: 379 QIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM 419
           ++   I       +P +++   ++++  + G+LED+ +   RM
Sbjct: 484 KVFESI------KDPAIDHYACMVDLLGRVGELEDAKRTMERM 520



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 127/259 (49%), Gaps = 22/259 (8%)

Query: 64  PSLHASFIKTFEPFDNQ-NVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           P L AS ++T      Q N +       +  +LL  Y K   + +A KLF+ MP R+ V+
Sbjct: 276 PCLAASLVRTLHQKRIQLNCF-------VRTALLDMYAKFGDLDSARKLFNTMPGRNVVT 328

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR-SELSLVSKMIHCL 181
           WN+M++G+ +NG+  M    FK  +       D+ +   ++SAC     L L + ++  L
Sbjct: 329 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 388

Query: 182 VYLCGYEEEVTVG----NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
                 E ++ +     NA+I  Y +CGS    ++VF EM  R+V+++  +ISG   +  
Sbjct: 389 T-----ENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGH 443

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E + L   M  G I P+ +T++  + ACS    L EGR++   +   A+    C    
Sbjct: 444 GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYAC---- 499

Query: 298 LMDMYSKCGSVEDAWQIFE 316
           ++D+  + G +EDA +  E
Sbjct: 500 MVDLLGRVGELEDAKRTME 518


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/492 (34%), Positives = 275/492 (55%), Gaps = 2/492 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +  IL+ C         + +H  +    Y   V +   LI  Y KC      R +F EM 
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNV++WTA+IS   Q     E L LFV+M      PN  T+ + + +C G      GRQ
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH I  K   +S + + S+L+DMY+K G + DA  +F    E D V+ T I+ G+AQ G 
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA++LF ++   G+  +    ++VL       +L  GKQ+HS +++S   S   + N 
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEP 457
           LI+MYSKCG++  + ++F  M  R  +SWN+M+  +++HG   + LEL++ M+ E  V+P
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 364

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACVVDMVGRAGLLIEARS 516
             +T+L++L  CSH  L + G+E   +M      I P   HY CVVD++GRAG + EA  
Sbjct: 365 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 424

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FI++MP  P   +W +LLG+C +H D E+G    +KL   +P++   Y++++N+Y+ +G+
Sbjct: 425 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 484

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W++       M+E  V KE G SW+E+++ VH+F   D  HP+ + +   + EL     +
Sbjct: 485 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKE 544

Query: 637 EGYVPNKRFILH 648
           +GYVP+   +L+
Sbjct: 545 DGYVPDLSCVLY 556



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 203/405 (50%), Gaps = 36/405 (8%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +H   IKT + P    +VY       +   L+  Y KCD + +A  +FD+MP R+ V
Sbjct: 81  GQRVHTHMIKTCYLP----SVY-------LRTRLIVLYNKCDCLGDARGMFDEMPQRNVV 129

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA----SFTIILSACDRSELSLVSKM 177
           SW  M+S + + G     F F   +L +   + D      +F  IL++C  S      + 
Sbjct: 130 SWTAMISAYSQRG-----FAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH +     YE  + VG++L+  Y K G       VF  +  R+V+  TA+ISG  Q  L
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            EE LKLF ++ +  +N NS+TY S + A SGL AL  G+Q+H  + +    S + + ++
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 304

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMYSKCG+V  A +IF+   E   +S   +LVG++++G   E ++LF K+++   ++ 
Sbjct: 305 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELF-KLMREENKVK 363

Query: 358 PNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSI 413
           P+ ++  AVL          +G +I   ++       P + +   ++++  + G +E++ 
Sbjct: 364 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 423

Query: 414 KVFSRM--APRNSVSWNSMIAAFARHGN-------GFKALELYEE 449
               +M   P  ++ W S++ +   H +       G K LEL  E
Sbjct: 424 DFIKKMPFVPTAAI-WGSLLGSCRVHSDVEIGIIVGQKLLELEPE 467



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 127/273 (46%), Gaps = 17/273 (6%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F  G  +H+  IK           N  +   + +SLL  Y K  ++ +A  +F  +P RD
Sbjct: 179 FETGRQIHSIAIKR----------NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERD 228

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            V+   ++SG+ + G  +     F R L++     +  ++  +L+A          K +H
Sbjct: 229 VVACTAIISGYAQMGLDEEALKLF-RQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVH 287

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             V   G    V + N+LI  Y KCG+    R++F  M  R  I+W A++ G  ++ +  
Sbjct: 288 SHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAR 347

Query: 240 EGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQI--HGILWKLALQSDLCIES 296
           E L+LF  M     + P+S+TYL+ +  CS  Q    G +I  + +  K  ++ D+    
Sbjct: 348 EVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYG 407

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            ++D+  + G VE+A   F+F +++  V    I
Sbjct: 408 CVVDLLGRAGRVEEA---FDFIKKMPFVPTAAI 437



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 109/218 (50%), Gaps = 20/218 (9%)

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +  ++M   G E+      ++L       ++  G+++H+ +IK+ +  + ++   LI +Y
Sbjct: 48  EALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLY 107

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KC  L D+  +F  M  RN VSW +MI+A+++ G  F+AL L+ EM     EP   TF 
Sbjct: 108 NKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFA 167

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSF 517
           ++L +C        G    ++  ++H I+ +  +       + ++DM  ++G + +A   
Sbjct: 168 TILTSCY-------GSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGV 220

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMG-KYAAEKLF 554
              +P + DV+   A+     I G ++MG    A KLF
Sbjct: 221 FHCLPER-DVVACTAI-----ISGYAQMGLDEEALKLF 252


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 170/492 (34%), Positives = 276/492 (56%), Gaps = 2/492 (0%)

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
           +  IL+ C         + +H  +    Y   V +   LI  Y KC      R++F EM 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            +NV++WTA+IS   Q     E L LFV+M      PN  T+ + + +C G      GRQ
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IH I  K   +S + + S+L+DMY+K G + DA  +F    E D V+ T I+ G+AQ G 
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           +EEA++LF ++   G+  +    ++VL       +L  GKQ+HS +++S   S   + N 
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEP 457
           LI+MYSKCG++  + ++F  M  R  +SWN+M+  +++HG   + LEL++ M+ E  V+P
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 392

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACVVDMVGRAGLLIEARS 516
             +T+L++L  CSH  L + G+E   +M      I P   HY CVVD++GRAG + EA  
Sbjct: 393 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 452

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576
           FI++MP  P   +W +LLG+C +H D E+G    +KL   +P++   Y++++N+Y+ +G+
Sbjct: 453 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 512

Query: 577 WKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           W++       M+E  V KE G SW+E+++ VH+F   D  HP+ + +   + EL     +
Sbjct: 513 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKE 572

Query: 637 EGYVPNKRFILH 648
           +GYVP+   +L+
Sbjct: 573 DGYVPDLSCVLY 584



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 204/405 (50%), Gaps = 36/405 (8%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +H   IKT + P    +VY       +   L+  Y KCD + +A ++FD+MP ++ V
Sbjct: 109 GQRVHTHMIKTCYLP----SVY-------LRTRLIVLYNKCDCLGDAREMFDEMPQKNVV 157

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA----SFTIILSACDRSELSLVSKM 177
           SW  M+S + + G     F F   +L +   + D      +F  IL++C  S      + 
Sbjct: 158 SWTAMISAYSQRG-----FAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           IH +     YE  + VG++L+  Y K G       VF  +  R+V+  TA+ISG  Q  L
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
            EE LKLF ++ +  +N NS+TY S + A SGL AL  G+Q+H  + +    S + + ++
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           L+DMYSKCG+V  A +IF+   E   +S   +LVG++++G   E ++LF K+++   ++ 
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELF-KLMREENKVK 391

Query: 358 PNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSI 413
           P+ ++  AVL          +G +I   ++       P + +   ++++  + G +E++ 
Sbjct: 392 PDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAF 451

Query: 414 KVFSRM--APRNSVSWNSMIAAFARHGN-------GFKALELYEE 449
               +M   P  ++ W S++ +   H +       G K LEL  E
Sbjct: 452 DFIKKMPFVPTAAI-WGSLLGSCRVHSDVEIGIIVGQKLLELEPE 495



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 127/273 (46%), Gaps = 17/273 (6%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
           F  G  +H+  IK           N  +   + +SLL  Y K  ++ +A  +F  +P RD
Sbjct: 207 FETGRQIHSIAIKR----------NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERD 256

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
            V+   ++SG+ + G  +     F R L++     +  ++  +L+A          K +H
Sbjct: 257 VVACTAIISGYAQMGLDEEALKLF-RQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVH 315

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             V   G    V + N+LI  Y KCG+    R++F  M  R  I+W A++ G  ++ +  
Sbjct: 316 SHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAR 375

Query: 240 EGLKLFVKMH-LGLINPNSLTYLSSVMACSGLQALCEGRQI--HGILWKLALQSDLCIES 296
           E L+LF  M     + P+S+TYL+ +  CS  Q    G +I  + +  K  ++ D+    
Sbjct: 376 EVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYG 435

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
            ++D+  + G VE+A   F+F +++  V    I
Sbjct: 436 CVVDLLGRAGRVEEA---FDFIKKMPFVPTAAI 465



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 20/218 (9%)

Query: 344 QLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +  ++M   G E+       +L       ++  G+++H+ +IK+ +  + ++   LI +Y
Sbjct: 76  EALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLY 135

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KC  L D+ ++F  M  +N VSW +MI+A+++ G  F+AL L+ EM     EP   TF 
Sbjct: 136 NKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFA 195

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSF 517
           ++L +C        G    ++  ++H I+ +  +       + ++DM  ++G + +A   
Sbjct: 196 TILTSCY-------GSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGV 248

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMG-KYAAEKLF 554
              +P + DV+   A+     I G ++MG    A KLF
Sbjct: 249 FHCLPER-DVVACTAI-----ISGYAQMGLDEEALKLF 280


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 312/599 (52%), Gaps = 44/599 (7%)

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
             LG  LHA  +K+          +     ++  + L  Y KC+ M++A +LFD     +
Sbjct: 298 LRLGTQLHAHALKS----------DFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLN 347

Query: 120 TVSWNTMVSGFLRNGEFDMGFG--FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177
             S+N M++G+    + D GF      R L       D+ S +  L AC   +       
Sbjct: 348 LQSYNAMITGY---SQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ 404

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H L     +   + V NA I  Y KC +     +VF EM  ++ ++W A+I+   QN+ 
Sbjct: 405 LHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEE 464

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             + L + V M    + P+  T+ S + AC+G  +L  G +IH  + KL + S+  I S+
Sbjct: 465 RSKTLNILVSMLRSGMEPDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSS 523

Query: 298 LMDMYSKCGSVEDAWQIF-----------------EFAEELDG----------VSMTVIL 330
           L+DMYSKCG +++A +I                  E  EE  G          VS   I+
Sbjct: 524 LVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAII 583

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
            G+      E+A + F +M++ GI  D    S VL       S+GLGKQIH+ +IK +  
Sbjct: 584 SGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQ 643

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + ++ + L++MYSKCG+L DS  +F +   R+ V+WN+MI  +A HG G +A++L+E M
Sbjct: 644 YDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESM 703

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
            L  + P   TF+SLL AC+H+GLV +G+++   M + + + PR EHY+ +VD++G++G 
Sbjct: 704 VLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGE 763

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA-QPDSPAPYILMAN 569
           + +A   I+ MP + D ++W+ LL AC I+ ++      A    L   P   + YIL++N
Sbjct: 764 VEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLRLDPQDSSTYILLSN 823

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           IY+ +G W + ++    M+   + KE G SW+EI  + H+F+V DK HP+   I+  LA
Sbjct: 824 IYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIRDEFHTFLVGDKAHPRWKEIYNGLA 882



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 230/431 (53%), Gaps = 15/431 (3%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN+++  Y   + M  A   F+ MP RD VSWN+M+SGFL+ GE        K  +E+
Sbjct: 116 VSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGE---NLESVKVFIEM 172

Query: 150 GF--YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           G    + D  SF++IL  C   E   +   IH +    GY+ +V  G+AL+  Y KC   
Sbjct: 173 GRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRL 232

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
                VF  M  +N I+W+A+I+G VQN   + GLK+F +M    +  +   Y S + +C
Sbjct: 233 DESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSC 292

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           + L  L  G Q+H    K     D  + +A +DMY+KC +++DA ++F+ +E L+  S  
Sbjct: 293 ATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYN 352

Query: 328 VILVGFAQ--NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
            ++ G++Q  NGF   A+ LF K+ K+ +  D   +S  L        L  G Q+H L  
Sbjct: 353 AMITGYSQKDNGF--RALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLAT 410

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           KS+F+ N  V N  I+MY KC  L+++ +VF  M  +++VSWN++IAA  ++    K L 
Sbjct: 411 KSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKTLN 470

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVD 503
           +   M   G+EP + TF S+L AC+   L N GME     T + ++   +  Y  + +VD
Sbjct: 471 ILVSMLRSGMEPDEYTFGSVLKACAGDSL-NHGMEI---HTTIVKLGMASNPYIGSSLVD 526

Query: 504 MVGRAGLLIEA 514
           M  + G++ EA
Sbjct: 527 MYSKCGMIDEA 537



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 200/411 (48%), Gaps = 33/411 (8%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           A+F+ +   C +     + K  H  + + G+   V V N L+  Y  CG+     K+F  
Sbjct: 50  ANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDG 109

Query: 217 MRVRNVITWTAVI-------------------------------SGLVQNQLYEEGLKLF 245
           M +R+V++W A+I                               SG +Q     E +K+F
Sbjct: 110 MPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVF 169

Query: 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305
           ++M    +  ++ ++   +  CS L+    G QIHGI  ++   +D+   SAL+DMY+KC
Sbjct: 170 IEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKC 229

Query: 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365
             +++++ +F    + + +S + I+ G  QN F +  +++F +M K G+ +  ++ ++VL
Sbjct: 230 KRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVL 289

Query: 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV 425
                   L LG Q+H+  +KSDF  +  V    ++MY+KC +++D+ ++F      N  
Sbjct: 290 KSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQDAQRLFDMSENLNLQ 349

Query: 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           S+N+MI  +++  NGF+AL L+ ++    +   +++    L AC+ V  +++G++ L  +
Sbjct: 350 SYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQ-LHGL 408

Query: 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGA 536
                 S         +DM G+   L EA    + M  K D + W A++ A
Sbjct: 409 ATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMGRK-DAVSWNAIIAA 458



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 45/199 (22%)

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI---- 431
           LGKQ H+ +I S F    FV+N L+ +Y  CG+L  + K+F  M  R+ VSWN+MI    
Sbjct: 67  LGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYA 126

Query: 432 ---------------------------AAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
                                      + F + G   ++++++ EM   GVE  + +F  
Sbjct: 127 ASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSV 186

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV------DMVGRAGLLIEARSFI 518
           +L  CS        +E  K  T++H I+ R  +   VV      DM  +   L E+ +  
Sbjct: 187 ILKVCSI-------LENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVF 239

Query: 519 ERMPVKPDVLVWQALLGAC 537
             MP K + + W A++  C
Sbjct: 240 YAMPQK-NWISWSAIIAGC 257


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N LI  Y K G   + RK+F EM  RNV TW A+++GL  + L EE L  F  M    + 
Sbjct: 112 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 171

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+     S    C+GL+ +  GRQ+H  + +  L  D+C+ S+L  MY +CG + D    
Sbjct: 172 PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 231

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTS 373
                 L+ VS    + G  QNG  E A++ F  M  AG+E +    VSAV     +  +
Sbjct: 232 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL-AA 290

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G+QIH+L IK+       V   L++MYS+CG L DS +V    +  + V  ++MI+A
Sbjct: 291 LAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISA 350

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG+G KA+ L+++M   G EP +VTFL+LL+ACSH GL ++GM   + MT+ + + P
Sbjct: 351 YGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP 410

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HY C+VD++GR+G L EA   I  MPV+PD ++W+ LL AC      +M +  AE++
Sbjct: 411 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERV 470

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P   A Y+L++NI + S RW++ +K  + M+E  V KE G+SW+E++ Q+H F   
Sbjct: 471 IELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTG 530

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ H +   I   L E++  +   GY P+   + H
Sbjct: 531 DESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFH 565



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 188/390 (48%), Gaps = 14/390 (3%)

Query: 84  NVPNATVI-WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
            +P   V+ WN L+  Y+K   +  A KLFD+MP R+  +WN MV+G   +G  +   GF
Sbjct: 102 RIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGF 161

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F      G  Q D+     +   C      +  + +H  V   G + ++ VG++L   Y 
Sbjct: 162 FFAMRREGM-QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYM 220

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           +CG    G      +   N+++    ISG  QN   E  L+ F  M    +  N++T++S
Sbjct: 221 RCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVS 280

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
           +V +CS L AL +G+QIH +  K  +   + + ++L+ MYS+CG + D+ ++       D
Sbjct: 281 AVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTD 340

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQ 379
            V  + ++  +  +G  ++A+ LF +M+ AG E  PN V+ +  ++    S GL   G  
Sbjct: 341 LVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHS-GLKDEGMN 397

Query: 380 IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFAR 436
              L+ K+ +   P V +   ++++  + G L ++  +   M  + + V W ++++A  +
Sbjct: 398 CFELMTKT-YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA-CK 455

Query: 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
               F   E   E  +E ++P D     LL
Sbjct: 456 TQKKFDMAERIAERVIE-LDPHDSASYVLL 484



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++     G  +EA+    +  + G+  +P + S +   F    +L L +Q+H+    S  
Sbjct: 20  IIRLCSTGRVKEALH---RRFREGLWSEPGLFSHI---FRACQALPLLRQLHAFAATSGA 73

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            ++ F  N L+  Y+  GD   +  +F R+  RN +SWN +I  + ++G+   A +L++E
Sbjct: 74  AADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDE 133

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485
           M    V     T+ +++   ++ GL  + + F  +M
Sbjct: 134 MPARNV----ATWNAMVAGLTNSGLNEESLGFFFAM 165


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 190/623 (30%), Positives = 316/623 (50%), Gaps = 43/623 (6%)

Query: 62  LGPSLHA--SFIKTFEPFDN------QNVYNVPNAT-VIWNSLLSFYLKCD--QMRNAVK 110
             P  H   S ++T E  D       Q +    NA  V+ N +++F    +    + A +
Sbjct: 14  FSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARR 73

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LFD++P  +   WNTM+ G+ R     +G   +   L  G  + D+ +F  +     R  
Sbjct: 74  LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLFKGFTRDI 132

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                + +H  V   G +  V V  AL+  Y  CG   + R VF      +VITW  +IS
Sbjct: 133 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 192

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
              +   +EE  +LF+ M    + P ++T +  + ACS L+ L  G+++H  +    ++S
Sbjct: 193 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 252

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF--------AQNGFEE-- 340
           +L +E+A++DMY+ CG ++ A  IF      D +S T I+ GF        A+N F++  
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 312

Query: 341 ---------------------EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
                                EA++LF  M    ++ D   + +VL       +L LG+ 
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 372

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I + I ++   ++ FV N LI+MY KCGD++ +  +F  M+ R+  +W +MI   A +G+
Sbjct: 373 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 432

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G KAL+++  M    + P ++T++ +L AC+H GLV+KG ++   MT  H I P   HY 
Sbjct: 433 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 492

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++ RAG L EA   IE MP+K + +VW ALL  C ++ +S+M +   +++   +PD
Sbjct: 493 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 552

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           + A Y+L+ NIY+   RW +  +  + M + G+ K  G S IE+  +VH FV  D+ HPQ
Sbjct: 553 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQ 612

Query: 620 ADTIHGVLAELLRLMIDEGYVPN 642
              I   L ++ + +   GY P+
Sbjct: 613 TKNIDAKLDKMTQDLKLAGYSPD 635



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 141/317 (44%), Gaps = 53/317 (16%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
            K VL   V +  +LS  +K      G  +H S++K  +         V +  V+ N+++
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVH-SYVKNCK---------VESNLVLENAMI 261

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK------------ 144
             Y  C +M +A+ +F  M  RD +SW T+VSGF   GE D+   +F             
Sbjct: 262 DMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTA 321

Query: 145 ------------------RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
                             R+++    + D+ +   +L+AC       + + I   +    
Sbjct: 322 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 381

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
            + ++ V NALI  YFKCG       +F EM  R+  TWTA+I GL  N   E+ L +F 
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-------HGILWKLALQSDLCIESALM 299
            M    I P+ +TY+  + AC+    + +GR+        HGI      + ++     L+
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI------EPNIAHYGCLV 495

Query: 300 DMYSKCGSVEDAWQIFE 316
           D+ ++ G +++A+++ E
Sbjct: 496 DLLARAGRLKEAYEVIE 512



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 20/228 (8%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           HLG      +I+T+   D   +    N   + N+L+  Y KC  +  A  +F +M  RD 
Sbjct: 363 HLGALELGEWIRTY--IDRNKI---KNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDK 417

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
            +W  M+ G   NG  +     F   L+      D+ ++  +LSAC  +   LV K    
Sbjct: 418 FTWTAMIVGLAVNGHGEKALDMFSNMLKASILP-DEITYIGVLSAC--THTGLVDKGRKY 474

Query: 181 LVYLC---GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQ 236
            + +    G E  +     L+    + G      +V   M ++ N I W A+++G    +
Sbjct: 475 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGC---R 531

Query: 237 LYEEG--LKLFVKMHLGLINPNSLTYL---SSVMACSGLQALCEGRQI 279
           +Y E    ++ VK  L L   N   Y+   +   AC     L E RQ+
Sbjct: 532 VYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQM 579


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/582 (32%), Positives = 309/582 (53%), Gaps = 13/582 (2%)

Query: 55  AKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114
           AK  H      +H   +K+  PF   ++Y       +  +++  Y+KC ++ +A  LFD 
Sbjct: 63  AKLSHLTNSQIIHTHVVKS--PF-YSDIY-------VQTAMVDMYVKCGKVDDAYNLFDK 112

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MP+R+  SWN M+ GF + G  D  F  F   + L   + D A+   +  A   ++    
Sbjct: 113 MPVRNIASWNAMIIGFSQIGSLDRVFNLF-MGMRLVGTRPDAATVIGLTRAVISAKSLRF 171

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWTAVISGL 232
            K +H +    G + + +V N  I +Y KCG     + VF  ++   R+ ++W ++I+  
Sbjct: 172 LKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACY 231

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
                Y + +K +  +      P++ T +S + +C   +AL  G  IHG  ++L   SD+
Sbjct: 232 AHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDI 291

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + + L+ MYS+CG +  A  +F+       VS T ++ G+++ G  ++A+ LF  M + 
Sbjct: 292 SLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEET 351

Query: 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412
           G + D   V +++   G   +LGLG  I +     +   +  V N LI+MY+KCG L D+
Sbjct: 352 GEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDA 411

Query: 413 IKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
            ++F  +  R  VSW +MIAA A +G   +AL+L+  +   G+EP ++TFL++L AC H 
Sbjct: 412 REIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHG 471

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           G + KG E    MTE + I+P  +HY+C++D++GR G LIEA   I+ MP+KPD  +W A
Sbjct: 472 GYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGA 531

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LLGAC IH + E+G+Y +  LF  QP     ++ MANIY+  GRW E A   K M+   +
Sbjct: 532 LLGACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQM 591

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLM 634
            K  G S +++    H F V+D+ H  +  I+  L  L   M
Sbjct: 592 RKSPGKSVVQVNGMSHVFFVEDRSHHDSLLIYEALGNLAMQM 633



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 200/422 (47%), Gaps = 5/422 (1%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN+ + G +  G        F + L+L   Q +  +F  +  AC +      S++IH  V
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQ-LKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHV 78

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
               +  ++ V  A++  Y KCG       +F +M VRN+ +W A+I G  Q    +   
Sbjct: 79  VKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRVF 138

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
            LF+ M L    P++ T +    A    ++L   + +H I  +  L +D  + +  +  Y
Sbjct: 139 NLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSNTWIAAY 198

Query: 303 SKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           SKCG ++ A  +F   ++     VS   ++  +A  G   +A++ +  ++  G + D + 
Sbjct: 199 SKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDAST 258

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA 420
           + ++L       +L  G  IH    +    S+  + N LI+MYS+CGD+  +  +F  M+
Sbjct: 259 IISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATILFDGMS 318

Query: 421 PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480
            R  VSW +MI+ ++  G    AL L+  M+  G +P  VT LSL+  C   G +  G  
Sbjct: 319 IRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLG-H 377

Query: 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIH 540
           ++ +   +H +         ++DM  + G L +AR     +P +  V+ W A++ AC+++
Sbjct: 378 WIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRT-VVSWTAMIAACALN 436

Query: 541 GD 542
           G+
Sbjct: 437 GE 438



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 184/391 (47%), Gaps = 32/391 (8%)

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
           ++  +  W + I G V      + L LF ++ L  + PN+ T+     AC+ L  L   +
Sbjct: 13  KLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQ 72

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
            IH  + K    SD+ +++A++DMY KCG V+DA+ +F+     +  S   +++GF+Q G
Sbjct: 73  IIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIG 132

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             +    LF+ M   G   D   V  +        SL   K +H++ I++   ++  V+N
Sbjct: 133 SLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVSN 192

Query: 398 GLINMYSKCGDLEDSIKVFS--RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
             I  YSKCG+L+ +  VF   +   R+SVSWNS+IA +A  G    A++ Y+ +  +G 
Sbjct: 193 TWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGF 252

Query: 456 EPTDVTFLSLLHACSH-----VGLVNKGMEF-LKSMTEVHRISPRAEHYACVVDMVGRAG 509
           +P   T +SLL +C        G +  G  F L   +++  I+        ++ M  R G
Sbjct: 253 KPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINT-------LISMYSRCG 305

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY-AAEKLFLAQPDS---PAPYI 565
            +  A    + M ++  V  W A+     I G SE+G+   A  LF A  ++   P    
Sbjct: 306 DISSATILFDGMSIRTCV-SWTAM-----ISGYSEVGRVDDALVLFNAMEETGEKPDIVT 359

Query: 566 LMANIYSCS-------GRWKERAKAIKRMKE 589
           +++ I  C        G W +   ++  +K+
Sbjct: 360 VLSLISGCGKTGALGLGHWIDNYASLHELKK 390


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 187/582 (32%), Positives = 308/582 (52%), Gaps = 40/582 (6%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  A+ +FD +     + WNTM  G   + +       +   + LG    +  +F  +
Sbjct: 51  DGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLP-NSYTFPFL 109

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYE-------------------------------EEV 191
           L +C +S      + +H  V   G++                                +V
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G   S  K+F E+ V++V++W A ISG  +   Y+E L+LF KM   
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+  T ++ + AC+   ++  GRQ+H  +       +L I +AL+D+YSKCG +E A
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETA 289

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +F+     D +S   ++ G+      +EA+ LF  M+++G +  PN V+ +L +    
Sbjct: 290 CGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK--PNDVT-MLSILSAC 346

Query: 372 TSLG---LGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
             LG   +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF  M  R+  S
Sbjct: 347 AHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSS 406

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WN+MI  FA HG    A +++  M+  G+EP D+TF+ LL ACSH G+++ G    +SMT
Sbjct: 407 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 466

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
             +++ P+ EHY C++D+ G +GL  EA   I  M ++PD ++W +LL AC +HG+ E+G
Sbjct: 467 RDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELG 526

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           +  A+ L   +P++P  Y+L++NIY+ + RW E AK    + + G+ K  G S IEI+  
Sbjct: 527 ESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSV 586

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           VH F++ DK HP+   I+G+L E+  L+ + G+VP+   +L 
Sbjct: 587 VHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 628


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 190/623 (30%), Positives = 316/623 (50%), Gaps = 43/623 (6%)

Query: 62  LGPSLHA--SFIKTFEPFDN------QNVYNVPNAT-VIWNSLLSFYLKCD--QMRNAVK 110
             P  H   S ++T E  D       Q +    NA  V+ N +++F    +    + A +
Sbjct: 35  FSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARR 94

Query: 111 LFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170
           LFD++P  +   WNTM+ G+ R     +G   +   L  G  + D+ +F  +     R  
Sbjct: 95  LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV-KPDRYTFPFLFKGFTRDI 153

Query: 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVIS 230
                + +H  V   G +  V V  AL+  Y  CG   + R VF      +VITW  +IS
Sbjct: 154 ALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIIS 213

Query: 231 GLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQS 290
              +   +EE  +LF+ M    + P ++T +  + ACS L+ L  G+++H  +    ++S
Sbjct: 214 AYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVES 273

Query: 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF--------AQNGFEE-- 340
           +L +E+A++DMY+ CG ++ A  IF      D +S T I+ GF        A+N F++  
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 333

Query: 341 ---------------------EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
                                EA++LF  M    ++ D   + +VL       +L LG+ 
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 393

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           I + I ++   ++ FV N LI+MY KCGD++ +  +F  M+ R+  +W +MI   A +G+
Sbjct: 394 IRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGH 453

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
           G KAL+++  M    + P ++T++ +L AC+H GLV+KG ++   MT  H I P   HY 
Sbjct: 454 GEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG 513

Query: 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559
           C+VD++ RAG L EA   IE MP+K + +VW ALL  C ++ +S+M +   +++   +PD
Sbjct: 514 CLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPD 573

Query: 560 SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQ 619
           + A Y+L+ NIY+   RW +  +  + M + G+ K  G S IE+  +VH FV  D+ HPQ
Sbjct: 574 NGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQ 633

Query: 620 ADTIHGVLAELLRLMIDEGYVPN 642
              I   L ++ + +   GY P+
Sbjct: 634 TKNIDAKLDKMTQDLKLAGYSPD 656



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 141/317 (44%), Gaps = 53/317 (16%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
            K VL   V +  +LS  +K      G  +H S++K  +         V +  V+ N+++
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVH-SYVKNCK---------VESNLVLENAMI 282

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK------------ 144
             Y  C +M +A+ +F  M  RD +SW T+VSGF   GE D+   +F             
Sbjct: 283 DMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTA 342

Query: 145 ------------------RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG 186
                             R+++    + D+ +   +L+AC       + + I   +    
Sbjct: 343 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 402

Query: 187 YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFV 246
            + ++ V NALI  YFKCG       +F EM  R+  TWTA+I GL  N   E+ L +F 
Sbjct: 403 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 462

Query: 247 KMHLGLINPNSLTYLSSVMACSGLQALCEGRQI-------HGILWKLALQSDLCIESALM 299
            M    I P+ +TY+  + AC+    + +GR+        HGI      + ++     L+
Sbjct: 463 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI------EPNIAHYGCLV 516

Query: 300 DMYSKCGSVEDAWQIFE 316
           D+ ++ G +++A+++ E
Sbjct: 517 DLLARAGRLKEAYEVIE 533



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 20/228 (8%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           HLG      +I+T+   D   +    N   + N+L+  Y KC  +  A  +F +M  RD 
Sbjct: 384 HLGALELGEWIRTY--IDRNKI---KNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDK 438

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
            +W  M+ G   NG  +     F   L+      D+ ++  +LSAC  +   LV K    
Sbjct: 439 FTWTAMIVGLAVNGHGEKALDMFSNMLKASILP-DEITYIGVLSAC--THTGLVDKGRKY 495

Query: 181 LVYLC---GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQ 236
            + +    G E  +     L+    + G      +V   M ++ N I W A+++G    +
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGC---R 552

Query: 237 LYEEG--LKLFVKMHLGLINPNSLTYL---SSVMACSGLQALCEGRQI 279
           +Y E    ++ VK  L L   N   Y+   +   AC     L E RQ+
Sbjct: 553 VYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQM 600


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 256/455 (56%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N LI  Y K G   + RK+F EM  RNV TW A+++GL  + L EE L  F  M    + 
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           P+     S    C+GL+ +  GRQ+H  + +  L  D+C+ S+L  MY +CG + D    
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-NMVSAVLGVFGVDTS 373
                 L+ VS    + G  QNG  E A++ F  M  AG+E +    VSAV     +  +
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL-AA 182

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  G+QIH+L IK+       V   L++MYS+CG L DS +V    +  + V  ++MI+A
Sbjct: 183 LAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISA 242

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +  HG+G KA+ L+++M   G EP +VTFL+LL+ACSH GL ++GM   + MT+ + + P
Sbjct: 243 YGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP 302

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             +HY C+VD++GR+G L EA   I  MPV+PD ++W+ LL AC      +M +  AE++
Sbjct: 303 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERV 362

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
               P   A Y+L++NI + S RW++ +K  + M+E  V KE G+SW+E++ Q+H F   
Sbjct: 363 IELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTG 422

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           D+ H +   I   L E++  +   GY P+   + H
Sbjct: 423 DESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFH 457



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 184/381 (48%), Gaps = 13/381 (3%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN L+  Y+K   +  A KLFD+MP R+  +WN MV+G   +G  +   GFF      G 
Sbjct: 3   WNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGM 62

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            Q D+     +   C      +  + +H  V   G + ++ VG++L   Y +CG    G 
Sbjct: 63  -QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 121

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
                +   N+++    ISG  QN   E  L+ F  M    +  N++T++S+V +CS L 
Sbjct: 122 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLA 181

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G+QIH +  K  +   + + ++L+ MYS+CG + D+ ++       D V  + ++ 
Sbjct: 182 ALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMIS 241

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSD 388
            +  +G  ++A+ LF +M+ AG E  PN V+ +  ++    S GL   G     L+ K+ 
Sbjct: 242 AYGFHGHGQKAVGLFKQMMAAGAE--PNEVTFLTLLYACSHS-GLKDEGMNCFELMTKT- 297

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALE 445
           +   P V +   ++++  + G L ++  +   M  + + V W ++++A  +    F   E
Sbjct: 298 YGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA-CKTQKKFDMAE 356

Query: 446 LYEEMKLEGVEPTDVTFLSLL 466
              E  +E ++P D     LL
Sbjct: 357 RIAERVIE-LDPHDSASYVLL 376



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 7/271 (2%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL   Y++C  +R+       +P  + VS NT +SG  +NG+ +    FF      G
Sbjct: 103 VGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAG 162

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + +  +F   +++C         + IH L    G ++ V V  +L+  Y +CG     
Sbjct: 163 V-EANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDS 221

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
            +V  E    +++  +A+IS    +   ++ + LF +M      PN +T+L+ + ACS  
Sbjct: 222 ERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHS 281

Query: 271 QALCEGRQIHGILWKL-ALQSDLCIESALMDMYSKCGSVEDAWQ-IFEFAEELDGVSMTV 328
               EG     ++ K   LQ  +   + ++D+  + G + +A   I     + DGV    
Sbjct: 282 GLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKT 341

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           +L         ++   +  ++ +  IE+DP+
Sbjct: 342 LLSACKT----QKKFDMAERIAERVIELDPH 368


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 314/580 (54%), Gaps = 19/580 (3%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           I  LL   AK   F  G SLHA+ +KT           + +  ++ N +++ Y KC  + 
Sbjct: 6   IGSLLHHCAKIKAFLHGLSLHAAALKT----------GMLSDIIVSNHVINLYSKCGNVI 55

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD+M  R+ VSW+ ++SG+ + G+  +    F +   +     ++  F  ++SAC
Sbjct: 56  FARRMFDEMSDRNLVSWSAIISGYDQTGQPLLALNLFSQMRIVP----NEYVFASVISAC 111

Query: 167 DRSELSLVSK--MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
             + L+ +S+   +H      G      V NALI+ Y KCG  +    V   M   N ++
Sbjct: 112 --ASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVS 169

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           + A+I+G V+NQ  E+G++ F  M      P+  T+   +  C+       G Q+H  + 
Sbjct: 170 YNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMI 229

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
           KL L+    I + ++ MYSK   +E+A ++F   +E D +S   ++         E A++
Sbjct: 230 KLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALR 289

Query: 345 LFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
           +F  M+    ++ D    + VL       S+  GKQIH  +I++    +  V+N L+NMY
Sbjct: 290 VFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMY 349

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           +KCG +++S  VF R + RN VSWN++IAAF  HG G +ALE +E+MK  G+ P  VTF+
Sbjct: 350 AKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFV 409

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            LL AC+H GLV +G  +  SM E + I P  EH++C++D++GRAG L EA  ++E++P 
Sbjct: 410 GLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPF 469

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
             D ++  +LL AC +HGD  +G++ A +L   QP + +PY+L++N+Y+    W   A+A
Sbjct: 470 GHDPIILGSLLSACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEA 529

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
            K +K  G+ KE G S I++      F + D  H + + I
Sbjct: 530 WKMLKYSGLKKEPGHSLIDVMGMFEKFTMGDLSHSRIEEI 569


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 283/519 (54%), Gaps = 38/519 (7%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y KC +M  AVK+F+ +P    VSWN +++GF + G          +++E+         
Sbjct: 2   YTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSC-------AKAVEV--------- 45

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEM 217
                       LSL+ +         G+E  EVT  N L+ S  K     S R +F ++
Sbjct: 46  ------------LSLMQE--------AGFEPNEVTYSN-LLASCIKARDVHSARAMFDKI 84

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              +V TW  ++SG  Q + +++ ++LF +M    + P+  T    + +CS L  L  GR
Sbjct: 85  SRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGR 144

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H    +  L +D+ + S L+DMYSKCG +  A  IF    E D V    I+ G   + 
Sbjct: 145 QVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHS 204

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             +EA   F +M + GI    +  ++++      +S+  G+QIH+ ++K  +  N +V +
Sbjct: 205 LNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGS 264

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            LI+MY+KCG+++D+   F  M  +N V+WN MI  +A++G G KA+EL+E M     +P
Sbjct: 265 ALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKP 324

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
             VTF+++L  CSH GLV+K M F  SM   + I P AEHY C++D +GRAG  +E  + 
Sbjct: 325 DAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEAL 384

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           I +MP K D ++W+ LL AC +H ++E+GK AAE LF   P +P+PY+L++NIY+  GR 
Sbjct: 385 IHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRH 444

Query: 578 KERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKM 616
            + +     M   GV K  G SWI+ +  V +F+V D +
Sbjct: 445 GDASAVRALMSNRGVVKGRGYSWIDQKDGVRAFMVADDL 483



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 192/389 (49%), Gaps = 11/389 (2%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR 145
           PN  V +++LL+  +K   + +A  +FD +      +WNT++SG+ +  +       F+R
Sbjct: 56  PN-EVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRR 114

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            ++    Q D+ +  +ILS+C +  +    + +H          ++ V + L+  Y KCG
Sbjct: 115 -MQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCG 173

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
                R +F +M  R+V+ W ++ISGL  + L +E    F +M    I P   +Y S + 
Sbjct: 174 QIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMIN 233

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +CS L ++  GRQIH  + K     ++ + SAL+DMY+KCG+++DA   F+     + V+
Sbjct: 234 SCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVA 293

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI- 384
              ++ G+AQNG  ++A++LF  M+    E  P+ V+ +  + G   S GL  +  +   
Sbjct: 294 WNEMIHGYAQNGLGDKAVELFEYMLTT--EQKPDAVTFIAVLTGCSHS-GLVDKAMAFFN 350

Query: 385 -IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAAFARHGNG 440
            +++ +   P   +   LI+   + G   +   +  +M  ++  + W  ++AA   H N 
Sbjct: 351 SMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNA 410

Query: 441 FKALELYEEM-KLEGVEPTDVTFLSLLHA 468
                  E + +++   P+    LS ++A
Sbjct: 411 ELGKCAAEHLFRIDPKNPSPYVLLSNIYA 439



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 178/410 (43%), Gaps = 49/410 (11%)

Query: 50  LLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
           +LS  +K G    G  +H++ ++          + + N   + + L+  Y KC Q+  A 
Sbjct: 130 ILSSCSKLGILDFGRQVHSASVR----------FLLHNDMFVASGLVDMYSKCGQIGIAR 179

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
            +F+ M  RD V WN+++SG   +      F FFK+  E G     ++S+  ++++C R 
Sbjct: 180 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPT-ESSYASMINSCSRL 238

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
                 + IH  V   GY++ V VG+ALI  Y KCG+    R  F  M ++N++ W  +I
Sbjct: 239 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 298

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289
            G  QN L ++ ++LF  M      P+++T+++ +  CS                     
Sbjct: 299 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS--------------------- 337

Query: 290 SDLCIESALMD-MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
                 S L+D   +   S+E+++ I   AE       T ++    + G   E   L  K
Sbjct: 338 -----HSGLVDKAMAFFNSMENSYGIIPLAEHY-----TCLIDALGRAGRFVEVEALIHK 387

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408
           M     + DP +   +L    V  +  LGK     + + D   NP     L N+Y+  G 
Sbjct: 388 M---PCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRID-PKNPSPYVLLSNIYASLGR 443

Query: 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
             D+  V + M+ R  V       ++    +G +A  + +++  +G E T
Sbjct: 444 HGDASAVRALMSNRGVVKGRGY--SWIDQKDGVRAFMVADDLGADGGELT 491



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 53/248 (21%)

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY+KC  +++A ++FE    +  VS  +++ GF Q G   +A+++   M +AG E +   
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN--NGLINMYSKCGDLEDSIKVFSR 418
            S +L       S    + +HS     D  S P V   N L++ Y +    +D+I++F R
Sbjct: 61  YSNLLA------SCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRR 114

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  +N                               V+P   T   +L +CS +G+++ G
Sbjct: 115 MQHQN-------------------------------VQPDRTTLAVILSSCSKLGILDFG 143

Query: 479 MEFLKSMTEVHRISPRAEHY------ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
                   +VH  S R   +      + +VDM  + G +  ARS   +M  + DV+ W +
Sbjct: 144 -------RQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM-TERDVVCWNS 195

Query: 533 LLGACSIH 540
           ++   +IH
Sbjct: 196 IISGLTIH 203



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%)

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KC ++++++KVF  +     VSWN +I  F + G+  KA+E+   M+  G EP +VT
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           + +LL +C     V+        ++      P    +  ++    +     +      RM
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGYCQEEQHQDTIELFRRM 115

Query: 522 P---VKPDVLVWQALLGACSIHGDSEMGK--YAAEKLFLAQPD 559
               V+PD      +L +CS  G  + G+  ++A   FL   D
Sbjct: 116 QHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHND 158


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 315/579 (54%), Gaps = 34/579 (5%)

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
           D +  A  +F+ +   + + WNTM+ G   + +       +   + LG    +  +F  +
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLP-NSYTFPFL 70

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYE-------------------------------EEV 191
           L +C +S+     + IH  V   G++                                +V
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 192 TVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251
               ALIT Y   G   S +K+F E+ V++V++W A+ISG  +   Y+E L+LF +M   
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + P+  TY++ + AC+   ++  GRQ+H  +      S+L I +AL+D+YSKCG VE A
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETA 250

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +F+     D +S   ++ G+      +EA+ LF +M+++G   +   + +VL      
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHL 310

Query: 372 TSLGLGKQIHSLIIK--SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
            ++ +G+ IH  I K     T+   +   LI+MY+KCGD+E + +VF+ M  ++  SWN+
Sbjct: 311 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 370

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MI  FA HG    + +L+  M+  G+EP D+TF+ LL ACSH G+++ G    +SMT+ +
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDY 430

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
           +++P+ EHY C++D++G +GL  EA   I  M ++PD ++W +LL AC +HG+ E+ +  
Sbjct: 431 KMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESF 490

Query: 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHS 609
           A+ L   +P++P+ YIL++NIY+ +GRW++ A+    +    + K  G S IE++  V  
Sbjct: 491 AQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFE 550

Query: 610 FVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           FVV DK HPQ   I+G+L E+  L+ + G+VP+   +L 
Sbjct: 551 FVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQ 589



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 213/425 (50%), Gaps = 22/425 (5%)

Query: 60  FHLGPSLHASFIKTF-EPFDNQNVYNVPNAT-----VIWNSLLSFYLKCDQMRNAVKLFD 113
           F L   +H S I  + + +  ++ Y V + +     V + +L++ Y     +R+A KLFD
Sbjct: 95  FDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFD 154

Query: 114 DMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL 173
           ++P++D VSWN M+SG+   G +      F+  +++   + D++++  +LSAC  S    
Sbjct: 155 EIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV-RPDESTYVTVLSACAHSGSIE 213

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
           + + +H  V   G++  + + NALI  Y KCG   +   +F  +  ++VI+W  +I G  
Sbjct: 214 LGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYT 273

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL--ALQSD 291
              LY+E L LF +M      PN +T LS + AC+ L A+  GR IH  + K    + + 
Sbjct: 274 HMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNA 333

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
             + ++L+DMY+KCG +E A Q+F         S   ++ GFA +G  + +  LF +M K
Sbjct: 334 SSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRK 393

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDL 409
            GIE D      +L        L LG+ I   + + D+   P + +   +I++    G  
Sbjct: 394 IGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ-DYKMTPKLEHYGCMIDLLGHSGLF 452

Query: 410 EDSIKVFSRMAPR-NSVSWNSMIAAFARHGNGFKALELYEE-----MKLEGVEPTDVTFL 463
           +++ ++ + M    + V W S++ A   HGN    +EL E      +K+E   P+    L
Sbjct: 453 KEAEEMINTMEMEPDGVIWCSLLKACKMHGN----VELAESFAQNLIKIEPENPSSYILL 508

Query: 464 SLLHA 468
           S ++A
Sbjct: 509 SNIYA 513


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 178/547 (32%), Positives = 296/547 (54%), Gaps = 21/547 (3%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  +H   +K    FDN          V+   LL  Y KC +++++ K+F+D+ +R+ V 
Sbjct: 173 GKKIHCQIVKV-PSFDN----------VVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVC 221

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLE---LGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           W +M++G+++N  ++ G   F R  E   LG    ++ ++  ++ AC +       K  H
Sbjct: 222 WTSMIAGYVKNDLYEEGLVLFNRMRENSVLG----NEYTYGTLVMACTKLRALHQGKWFH 277

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
             +   G E    +  +L+  Y KCG  S+ R+VF E    +++ WTA+I G   N    
Sbjct: 278 GCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVN 337

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E L LF KM    I PN +T  S +  C  +  L  GR IHG+  K+ +  D  + +AL+
Sbjct: 338 EALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIW-DTNVANALV 396

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
            MY+KC    DA  +FE   E D V+   I+ GF+QNG   EA+ LF +M    +  +  
Sbjct: 397 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGV 456

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCGDLEDSIKVFS 417
            V+++        SL +G  +H+  +K  F  +S+  V   L++ Y+KCGD E +  +F 
Sbjct: 457 TVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFD 516

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  +N+++W++MI  + + G+   +LEL+EEM  +  +P + TF S+L ACSH G+VN+
Sbjct: 517 TIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNE 576

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G ++  SM + +  +P  +HY C+VDM+ RAG L +A   IE+MP++PDV  + A L  C
Sbjct: 577 GKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGC 636

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            +H   ++G+   +K+    PD  + Y+L++N+Y+  GRW +  +    MK+ G+ K  G
Sbjct: 637 GMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIAG 696

Query: 598 ISWIEIE 604
            S +E E
Sbjct: 697 HSIMESE 703



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 153/486 (31%), Positives = 249/486 (51%), Gaps = 8/486 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I   L+S Y      ++A  +FD +P  D   W  ++  +  N E      F+   ++ G
Sbjct: 90  IATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHG 149

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHC-LVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           F   D   F+  L AC   +     K IHC +V +  ++  V  G  L+  Y KCG   S
Sbjct: 150 F-GYDDIVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG--LLDMYAKCGEIKS 206

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             KVF ++ +RNV+ WT++I+G V+N LYEEGL LF +M    +  N  TY + VMAC+ 
Sbjct: 207 SYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTK 266

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L+AL +G+  HG L K  ++   C+ ++L+DMY KCG + +A ++F     +D V  T +
Sbjct: 267 LRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 326

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +VG+  NG   EA+ LF KM   GI+ +   +++VL   G+  +L LG+ IH L IK   
Sbjct: 327 IVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI 386

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                V N L++MY+KC    D+  VF   + ++ V+WNS+I+ F+++G+  +AL L+  
Sbjct: 387 WDTN-VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHR 445

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRA 508
           M  E V P  VT  SL  AC+ +G +  G        ++  ++  + H    ++D   + 
Sbjct: 446 MNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKC 505

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G    AR   + +  K + + W A++G     GD++ G     +  L +   P      +
Sbjct: 506 GDAESARLIFDTIEEK-NTITWSAMIGGYGKQGDTK-GSLELFEEMLKKQQKPNESTFTS 563

Query: 569 NIYSCS 574
            + +CS
Sbjct: 564 VLSACS 569



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 51/337 (15%)

Query: 254 NPNSLTYLSS------VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
           + +SL Y +S      +  C+ + +L   RQ HG+L    L  D+ I + L+ +Y   G 
Sbjct: 47  DESSLNYAASRPCFLLLSKCTNIDSL---RQAHGVLTGNGLMGDISIATKLVSLYGSFGY 103

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
            +DA  +F+   E D     VIL  +  N    E ++ +  ++K G   D  + S  L  
Sbjct: 104 TKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKA 163

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                 L  GK+IH  I+K     N  V  GL++MY+KCG+++ S KVF  +  RN V W
Sbjct: 164 CTEVQDLDNGKKIHCQIVKVPSFDN-VVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCW 222

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLVN 476
            SMIA + ++    + L L+  M+   V   + T+ +L+ AC+           H  L+ 
Sbjct: 223 TSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIK 282

Query: 477 KGME------------FLK--SMTEVHRISPRAEHYACVVDMVGRAGLLI---------E 513
            G+E            ++K   ++   R+     H    VD+V    +++         E
Sbjct: 283 SGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSH----VDLVMWTAMIVGYTHNGSVNE 338

Query: 514 ARSFIERMP---VKPDVLVWQALLGACSIHGDSEMGK 547
           A S  ++M    +KP+ +   ++L  C + G+ E+G+
Sbjct: 339 ALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGR 375


>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic; Flags: Precursor
 gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 893

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 192/587 (32%), Positives = 312/587 (53%), Gaps = 23/587 (3%)

Query: 49  RLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNA 108
           +LL  S+  G    G ++H++ I          V  +P   V+  SL+ FY +  +M +A
Sbjct: 230 KLLGASSFLG-LEFGKTIHSNII----------VRGIPLNVVLKTSLVDFYSQFSKMEDA 278

Query: 109 VKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDR 168
           V++ +    +D   W ++VSGF+RN       G F     LG  Q +  +++ ILS C  
Sbjct: 279 VRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGL-QPNNFTYSAILSLCSA 337

Query: 169 SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS-SGRKVFGEMRVRNVITWTA 227
                  K IH      G+E+   VGNAL+  Y KC +S     +VFG M   NV++WT 
Sbjct: 338 VRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTT 397

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I GLV +   ++   L ++M    + PN +T    + ACS L+ +    +IH  L +  
Sbjct: 398 LILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRH 457

Query: 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFV 347
           +  ++ + ++L+D Y+    V+ AW +    +  D ++ T ++  F + G  E A+ +  
Sbjct: 458 VDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVIN 517

Query: 348 KMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403
            M   GI +D    P  +SA   +  ++T    GK +H   +KS F+    V N L++MY
Sbjct: 518 YMYGDGIRMDQLSLPGFISASANLGALET----GKHLHCYSVKSGFSGAASVLNSLVDMY 573

Query: 404 SKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           SKCG LED+ KVF  +A  + VSWN +++  A +G    AL  +EEM+++  EP  VTFL
Sbjct: 574 SKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFL 633

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            LL ACS+  L + G+E+ + M +++ I P+ EHY  +V ++GRAG L EA   +E M +
Sbjct: 634 ILLSACSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHL 693

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           KP+ ++++ LL AC   G+  +G+  A K     P  PA YIL+A++Y  SG+ +   K 
Sbjct: 694 KPNAMIFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKT 753

Query: 584 IKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL 630
              M E  + K+ G S +E++ +VHSFV +D    + D  +G+ AE+
Sbjct: 754 RNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDV--TRVDKTNGIYAEI 798



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 199/398 (50%), Gaps = 3/398 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+LLS YLK D + NA KLFD+M  R   +W  M+S F ++ EF      F+  +  G +
Sbjct: 62  NNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTH 121

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             ++ +F+ ++ +C           +H  V   G+E    VG++L   Y KCG      +
Sbjct: 122 P-NEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACE 180

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  ++  + I+WT +IS LV  + + E L+ + +M    + PN  T++  ++  S    
Sbjct: 181 LFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFV-KLLGASSFLG 239

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G+ IH  +    +  ++ ++++L+D YS+   +EDA ++   + E D    T ++ G
Sbjct: 240 LEFGKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSG 299

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           F +N   +EA+  F++M   G++ +    SA+L +     SL  GKQIHS  IK  F  +
Sbjct: 300 FVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDS 359

Query: 393 PFVNNGLINMYSKCGDLE-DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             V N L++MY KC   E ++ +VF  M   N VSW ++I     HG       L  EM 
Sbjct: 360 TDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMV 419

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
              VEP  VT   +L ACS +  V + +E    +   H
Sbjct: 420 KREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRH 457



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 203/403 (50%), Gaps = 12/403 (2%)

Query: 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201
           F  R+ ELG  Q    S   ILS C+ S  S +   IHC V   G  E + + N L++ Y
Sbjct: 13  FLSRTNELGNLQ---KSCIRILSFCE-SNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLY 68

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261
            K     + RK+F EM  R V  WT +IS   ++Q +   L LF +M     +PN  T+ 
Sbjct: 69  LKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFS 128

Query: 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
           S V +C+GL+ +  G ++HG + K   + +  + S+L D+YSKCG  ++A ++F   +  
Sbjct: 129 SVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNA 188

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL--GKQ 379
           D +S T+++          EA+Q + +MVKAG+   PN  + V  + G  + LGL  GK 
Sbjct: 189 DTISWTMMISSLVGARKWREALQFYSEMVKAGVP--PNEFTFV-KLLGASSFLGLEFGKT 245

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           IHS II      N  +   L++ YS+   +ED+++V +    ++   W S+++ F R+  
Sbjct: 246 IHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLR 305

Query: 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA 499
             +A+  + EM+  G++P + T+ ++L  CS V  ++ G +      +V       +   
Sbjct: 306 AKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVG-FEDSTDVGN 364

Query: 500 CVVDMVGR-AGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            +VDM  + +   +EA      M V P+V+ W  L+     HG
Sbjct: 365 ALVDMYMKCSASEVEASRVFGAM-VSPNVVSWTTLILGLVDHG 406



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 139/557 (24%), Positives = 261/557 (46%), Gaps = 38/557 (6%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +H S IKT FE             +V+ +SL   Y KC Q + A +LF  +   DT+
Sbjct: 143 GGRVHGSVIKTGFE-----------GNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTI 191

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  M+S  +   ++     F+   ++ G    ++ +F  +L A     L    K IH  
Sbjct: 192 SWTMMISSLVGARKWREALQFYSEMVKAGVPP-NEFTFVKLLGASSFLGLEF-GKTIHSN 249

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           + + G    V +  +L+  Y +        +V      ++V  WT+V+SG V+N   +E 
Sbjct: 250 IIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEA 309

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           +  F++M    + PN+ TY + +  CS +++L  G+QIH    K+  +    + +AL+DM
Sbjct: 310 VGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDM 369

Query: 302 YSKCGSVE-DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           Y KC + E +A ++F      + VS T +++G   +GF ++   L ++MVK   E++PN+
Sbjct: 370 YMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKR--EVEPNV 427

Query: 361 VSAVLGVFGVDTSLGLGK---QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           V+ + GV    + L   +   +IH+ +++        V N L++ Y+    ++ +  V  
Sbjct: 428 VT-LSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIR 486

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  R+++++ S++  F   G    AL +   M  +G+    ++    + A +++G +  
Sbjct: 487 SMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALET 546

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G + L   +     S  A     +VDM  + G L +A+   E +   PDV+ W  L+   
Sbjct: 547 G-KHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIAT-PDVVSWNGLVSGL 604

Query: 538 SIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           + +G   S +  +   ++   +PDS    IL++   +CS           R+ ++G++  
Sbjct: 605 ASNGFISSALSAFEEMRMKETEPDSVTFLILLS---ACSN---------GRLTDLGLEYF 652

Query: 596 TGISWI-EIEKQVHSFV 611
             +  I  IE QV  +V
Sbjct: 653 QVMKKIYNIEPQVEHYV 669


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 176/498 (35%), Positives = 287/498 (57%), Gaps = 2/498 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+FY +  ++  A  LFD MP R  V+WNT++ G  R+    +    F R    G  
Sbjct: 98  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 157

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               +S + +L AC R E +     +H +  + G+   V VG AL+  Y KC    + ++
Sbjct: 158 P-TASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQ 216

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  +NV T+TA+++G V ++   + + L  +M    + PN +TY S + + +  + 
Sbjct: 217 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 276

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  + K  L+ D  + SAL+ MYSKCG +E+  ++       D VS   ++ G
Sbjct: 277 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISG 336

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +  G  +EA Q F++M + G ++D    ++VL   G  +SL  G+Q+H+LI+K  + S 
Sbjct: 337 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 396

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY++ G + +S  VF  M   N VSWNS+++  A+HG+G + +E++E+M+ 
Sbjct: 397 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRR 456

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVGRAGLL 511
             V+P  +TFLS+L ACSHVGLV+KG+E+   M +  + +  R EHYAC+VD++GRAG L
Sbjct: 457 LHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYL 516

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   I  MP+KP   V++ALL AC IHG+ E+    +++L    P   + ++ ++N +
Sbjct: 517 NEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAF 576

Query: 572 SCSGRWKERAKAIKRMKE 589
           +  GRW   A+  + M E
Sbjct: 577 AGDGRWGNAAEIREAMSE 594



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 180/360 (50%), Gaps = 14/360 (3%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL--RNGEFDMGFGFFKR 145
           + V+  +L+  Y KC  +  A ++F +M  ++  ++  +V+GF+  R     M      R
Sbjct: 194 SVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAM---LLVR 250

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +E      +  +++ +LS+    E     K +HC V   G E +  V +AL+T Y KCG
Sbjct: 251 EMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCG 310

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
              +  KV   +  ++ +++ +VISGL      +E  + F++M     + +  T+ S + 
Sbjct: 311 ILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLK 370

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A     +L EGRQ+H ++ K+   S + ++++L+ MY++ G++ ++  +F   E  + VS
Sbjct: 371 AIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVS 430

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHS 382
              ++ G AQ+G  +E +++F +M +  + + P+ ++  L V    + +GL   G +  +
Sbjct: 431 WNSLMSGCAQHGHGKEVVEMFEQMRR--LHVQPDHIT-FLSVLTACSHVGLVDKGLEYFN 487

Query: 383 LIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           L+    +       +   ++++  + G L ++  + + M  +   S + ++++A   HGN
Sbjct: 488 LMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGN 547



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 20/324 (6%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N +  S LLS  A       G  +H + +K     D            + ++L++ Y
Sbjct: 257 VAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQ----------FVLSALVTMY 306

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + N VK+   +  +D VS+N+++SG    G     F  F   LE+  +  D   F
Sbjct: 307 SKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHF---LEMRRHGTDMDVF 363

Query: 160 TI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           T   +L A   S   L  + +H L+   GY+  V V N+LI+ Y + G+      VF  M
Sbjct: 364 TFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISM 423

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              N+++W +++SG  Q+   +E +++F +M    + P+ +T+LS + ACS +  + +G 
Sbjct: 424 EAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGL 483

Query: 278 QIHGILWKLALQSDLCIE--SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +   ++           E  + ++D+  + G + +A  +        G S+   L+   Q
Sbjct: 484 EYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQ 543

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPN 359
                  +++ +++ K  IE++P+
Sbjct: 544 I---HGNLEIVIRVSKRLIELNPH 564



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 2/147 (1%)

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN F    L+  Y +   L ++  +F +M  R +V+WN++I   AR      A+  + 
Sbjct: 90  LASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFA 149

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M   GV PT  +  S+L AC  +     G   L S+  +H           +VDM  + 
Sbjct: 150 RMARAGVSPTASSVSSVLVACVRLEDAAAGAT-LHSVGLMHGFCASVVVGTALVDMYAKC 208

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLG 535
             L  A+     M  K +V  + AL+ 
Sbjct: 209 HHLGAAQQVFREMEEK-NVATFTALVA 234


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 180/526 (34%), Positives = 284/526 (53%), Gaps = 3/526 (0%)

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           +  WNT +    +  +F      + + L  G  + +  +F   L +C    L ++    H
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHG-DRPNAFTFPFALKSCAALSLPILGSQFH 72

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE--MRVRNVITWTAVISGLVQNQL 237
             +   G   E  V   LI+ Y K     + RKVF E     +  + + A++SG V N  
Sbjct: 73  GQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSK 132

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297
             E + LF +M+   +  NS+T L  + AC     L  G  +H    K    SD+ + + 
Sbjct: 133 CSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNC 192

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
            + MY KCGSV  A ++F+       +S   ++ G+AQNG     ++L+  M   G+  D
Sbjct: 193 FITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPD 252

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
           P  +  VL       +  +G ++   I  S FTSNPF+NN LINMY++CG+L  +  VF 
Sbjct: 253 PVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFD 312

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            M  R  VSW ++I  +  HG+G  A++L++EM   G+EP    F+ +L ACSH GL ++
Sbjct: 313 GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQ 372

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGAC 537
           G+E+ K M   +++ P  EHY+C+VD++GRAG L EA++ IE MP+KPD  VW ALLGAC
Sbjct: 373 GLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGAC 432

Query: 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETG 597
            IH + E+ + A E++   +P++   Y+L++NIYS +   K   +    MKE  + K+ G
Sbjct: 433 KIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPG 492

Query: 598 ISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNK 643
            S++E++ +VH F+V D+ H Q+D I+ VL EL  +++ E   P K
Sbjct: 493 CSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEK 538



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 128/275 (46%), Gaps = 12/275 (4%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V +  L+       +  LG SLH S +K          Y   +   + N  ++ Y+KC
Sbjct: 151 NSVTLLGLIPACVSPINLELGSSLHCSTLK----------YGFDSDVSVVNCFITMYMKC 200

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A KLFD+MP++  +SWN MVSG+ +NG        + R++++     D  +   +
Sbjct: 201 GSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELY-RNMDMNGVHPDPVTLVGV 259

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           LS+C       V   +   +   G+     + NALI  Y +CG+ +  + VF  M  R +
Sbjct: 260 LSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTL 319

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           ++WTA+I G   +   E  ++LF +M    I P+   ++  + ACS      +G +   +
Sbjct: 320 VSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKM 379

Query: 283 LWK-LALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
           + +   L+      S ++D+  + G +++A  + E
Sbjct: 380 MKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIE 414


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 307/558 (55%), Gaps = 26/558 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N +++   K  ++  A +LFD+M   D ++W T++SG+++ G  +     F R       
Sbjct: 71  NWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDA---- 126

Query: 153 QLDQASFTIILSACDRS-ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
           + +  ++T ++    RS ++S   K+ + +       + V   N +I  Y + G   S  
Sbjct: 127 KKNVVTWTAMVGGYIRSNKISDAEKLFNEMP-----NKNVVSWNTMIDGYAQNGRIDSAM 181

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            +F +M  RNV++W  V+S L Q    EE  +LF +M      P       + M    L 
Sbjct: 182 YLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM------PERDVISWTAMIAGLLD 235

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
              +       L++   + DL   + ++    + G +  A ++F    + + +S T ++ 
Sbjct: 236 EALD-------LFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMIT 288

Query: 332 GFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
           G  Q G  EEA+++F +M+   G + +     +VLG       LG G+Q+H +I K+ + 
Sbjct: 289 GCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQ 348

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSR--MAPRNSVSWNSMIAAFARHGNGFKALELYE 448
            + FV + LINMYSKCG+L  + K+F     + R+ VSWN +IAA+A HG G +A+  ++
Sbjct: 349 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFK 408

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM+  G +P DVT++ LL ACSH GLV +G+++   + +   I  R +HYAC+VD+ GRA
Sbjct: 409 EMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRA 468

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA  FIER+  KP   VW ALL  C++H + ++GK AA+KL   +P++   Y+L++
Sbjct: 469 GRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLS 528

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIY+ +G+W+E A+   +MK+ G+ K+ G SWIE+  +VH FVV DK H Q+  I+ +L 
Sbjct: 529 NIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLR 588

Query: 629 ELLRLMIDEGYVPNKRFI 646
           +L   M   GY PN  FI
Sbjct: 589 DLHSKMKKAGYEPNNDFI 606



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 209/421 (49%), Gaps = 53/421 (12%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W +++  Y++ +++ +A KLF++MP ++ VSWNTM+ G+ +NG  D     F++  E 
Sbjct: 131 VTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER 190

Query: 150 GFYQLDQASFTIILSACDRSELS--LVSKM-----IHCLVYLCGY------------EEE 190
                +  +   +L+ C R E +  L  +M     I     + G             E +
Sbjct: 191 NVVSWN--TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDEALDLFERMPERD 248

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-H 249
           +   N +IT   + G     RK+F EM  +NVI+WT +I+G VQ    EE LK+F +M  
Sbjct: 249 LPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLS 308

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
                PN  T++S + ACS L  L EG+Q+H I+ K   Q    + SAL++MYSKCG + 
Sbjct: 309 TNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELG 368

Query: 310 DAWQIFE--FAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
            A ++F+     + D VS   I+  +A +G+ +EA+  F +M K+G +  P+ V+ V G+
Sbjct: 369 TARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFK--PDDVTYV-GL 425

Query: 368 FGVDTSLGLGKQ----------IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
               +  GL ++            S++++ D  +       L+++  + G L+++     
Sbjct: 426 LSACSHAGLVEEGLKYFDELVKDRSILVREDHYA------CLVDLCGRAGRLKEAFGFIE 479

Query: 418 RMAPRNSVS-WNSMIAAFARHGN---GFKALELYEEMKLEGVEPTDV-TFLSLLHACSHV 472
           R+  + S   W +++A    H N   G +A +     KL  VEP +  T+L L +  +  
Sbjct: 480 RLETKPSARVWGALLAGCNVHANVKIGKQAAK-----KLLEVEPENAGTYLLLSNIYAST 534

Query: 473 G 473
           G
Sbjct: 535 G 535



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 167/373 (44%), Gaps = 26/373 (6%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
           WN++++  ++   +R A KLF++MP ++ +SW TM++G ++ GE +     F R L    
Sbjct: 252 WNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNG 311

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
            + +Q +F  +L AC         + +H ++    Y++   V +ALI  Y KCG   + R
Sbjct: 312 AKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTAR 371

Query: 212 KVF--GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
           K+F  G    R++++W  +I+    +   +E +  F +M      P+ +TY+  + ACS 
Sbjct: 372 KMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSH 431

Query: 270 LQALCEGRQIHGILWKLALQSDLCIE---SALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
              + EG +    L K   +S L  E   + L+D+  + G +++A   F F E L+    
Sbjct: 432 AGLVEEGLKYFDELVK--DRSILVREDHYACLVDLCGRAGRLKEA---FGFIERLETKPS 486

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             +             +++  +  K  +E++P      L +  +  S G  ++   + +K
Sbjct: 487 ARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLK 546

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                   + +  +     C  +E   +V   +    S S + +I +  R        +L
Sbjct: 547 --------MKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLR--------DL 590

Query: 447 YEEMKLEGVEPTD 459
           + +MK  G EP +
Sbjct: 591 HSKMKKAGYEPNN 603



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 20/119 (16%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDD--MPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           ++T + ++L++ Y KC ++  A K+FDD     RD VSWN +++ +  +G       FFK
Sbjct: 349 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFK 408

Query: 145 RSLELGFYQLDQASFTIILSACDRSEL---------------SLVSKMIH--CLVYLCG 186
              + GF + D  ++  +LSAC  + L               S++ +  H  CLV LCG
Sbjct: 409 EMRKSGF-KPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCG 466


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 317/619 (51%), Gaps = 62/619 (10%)

Query: 33  TSSTSKLVLDNYVDISRLLSISAK---EGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT 89
           +    +++LD Y  I  L  + +K     H  + P+L    ++ +      +V       
Sbjct: 37  SKEACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSV------- 89

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
                             A  +FD    ++ V +N M+  ++ N  +      F+  L  
Sbjct: 90  ------------------ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSC 131

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            F   D  +F  +L AC   +   V   +H  +   G +  + +GNAL+  Y KCG    
Sbjct: 132 AF-NPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RKV  +M  R+V++W ++++G  Q+  +++ L++  +M     +  +L + +  MA   
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM-----DSLNLNHDAGTMA--- 242

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                            +L   +C        Y+   +V+    +FE   + + +S  V+
Sbjct: 243 -----------------SLSPVVC--------YTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  +  N    EA+ LF++M + G++ D   ++++L   G  ++L LG+++H  I K + 
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N  + N L++MY+KCG LE++  VF +M  R+ VSW SM++A+ R G G+ A+ L+ +
Sbjct: 338 QPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G  P  + F+S+L ACSH GL+++G  + + MTE + I PR EH+AC+VD+ GRAG
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            + EA SFI++MP++P+  VW ALL AC +H   ++G  AA+ LF   P     Y+L++N
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +G WK+       MK++G+ K  GIS +E+  QVH+F+  D+ HPQA  I+G L  
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L+  M + GY+P     LH
Sbjct: 578 LVGKMKELGYIPQTESALH 596


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 298/561 (53%), Gaps = 6/561 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSL++ Y+KC ++R A  LFD+M +R  VS+N ++ G+L +GE       FK  +    Y
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVS-SLY 117

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           Q ++  FT +LSAC  S         H  ++  G      V ++L+  Y KC       +
Sbjct: 118 QPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 213 VF----GEMRVRN-VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           V     G +   N    + +V++ LV++    E +++  +M    +  +S+TY+S +  C
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLC 237

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             ++ L  G Q+H  L K  L  D+ + S L+DM+ KCG V  A ++F+  +  + V  T
Sbjct: 238 GQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWT 297

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  + QNG  EE + L   M + G   +    + +L  F    +L  G  +H+ + K 
Sbjct: 298 SLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKL 357

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              +   V N LINMYSKCG ++ S  VF  M  R+ ++WN+MI  +++HG G +AL L+
Sbjct: 358 GIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLF 417

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
           ++M   G  P  VTF+ +L AC+H+ LVN+G  +L  + +  ++ P  EHY CVV ++ R
Sbjct: 418 QDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCR 477

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG+L EA +F+    VK DV+ W+ LL AC+IH +  +G   AE +    P     Y L+
Sbjct: 478 AGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLL 537

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +N+Y+ +  W       K M+E  V KE G+SWIEI   VH F  D   HP+   I+  +
Sbjct: 538 SNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKV 597

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             LL ++   GYVPN   +LH
Sbjct: 598 QLLLEMIKQLGYVPNIEAVLH 618


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 283/487 (58%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL  C R+   + +K  H  +     E +VT+ N LI +Y KCG     R+VF  M  R+
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  +I    +N++  E L +F++M       +  T  S + AC       E +++H 
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K  +  +L + +AL+D+Y+KCG ++DA Q+FE  ++   V+ + ++ G+ QN   EE
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ L+ +  +  +E +   +S+V+       +L  GKQ+H++I KS F SN FV +  ++
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 298

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG L +S  +FS +  +N   WN++I+ FA+H    + + L+E+M+ +G+ P +VT
Sbjct: 299 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 358

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F SLL  C H GLV +G  F K M   + +SP   HY+C+VD++GRAGLL EA   I+ +
Sbjct: 359 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 418

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  P   +W +LL +C ++ + E+ + AAEKLF  +P++   ++L++NIY+ + +W+E A
Sbjct: 419 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIA 478

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K+ K +++  V K  G SWI+I+ +VH+F V +  HP+   I   L  L+      GY P
Sbjct: 479 KSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKP 538

Query: 642 NKRFILH 648
           +    LH
Sbjct: 539 SVEHELH 545



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 219/440 (49%), Gaps = 26/440 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  +L + A+ G      + H   I+           ++     + N L++ Y KC  + 
Sbjct: 56  VHEILQLCARNGAVMEAKACHGKIIRI----------DLEGDVTLLNVLINAYSKCGFVE 105

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD M  R  VSWNTM+  + RN         F      GF +  + + + +LSAC
Sbjct: 106 LARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGF-KFSEFTISSVLSAC 164

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             +  +L  K +HCL      +  + VG AL+  Y KCG      +VF  M+ ++ +TW+
Sbjct: 165 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 224

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++++G VQN+ YEE L L+ +     +  N  T  S + ACS L AL EG+Q+H ++ K 
Sbjct: 225 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 284

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              S++ + S+ +DMY+KCGS+ +++ IF   +E +      I+ GFA++   +E M LF
Sbjct: 285 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILF 344

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV--NNGLINMYS 404
            KM + G+  +    S++L V G    +  G++   L +++ +  +P V   + ++++  
Sbjct: 345 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL-MRTTYGLSPNVVHYSCMVDILG 403

Query: 405 KCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYE--EMKLEGVEPTDV 460
           + G L ++ ++   +   P  S+ W S++A+       +K LEL E    KL  +EP + 
Sbjct: 404 RAGLLSEAYELIKSIPFDPTASI-WGSLLAS----CRVYKNLELAEVAAEKLFELEPENA 458

Query: 461 TFLSLLHACSHVGLVNKGME 480
               LL   S++   NK  E
Sbjct: 459 GNHVLL---SNIYAANKQWE 475



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 22/190 (11%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           + N+V  +L +   + ++   K  H  II+ D   +  + N LIN YSKCG +E + +VF
Sbjct: 52  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 111

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  R+ VSWN+MI  + R+    +AL+++ EM+ EG + ++ T  S+L AC   G+  
Sbjct: 112 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNC 168

Query: 477 KGMEFLKSMTEVHRISPRAEHYACV----------VDMVGRAGLLIEARSFIERMPVKPD 526
             +E  K    +H +S +     C+          +D+  + G++ +A    E M  K  
Sbjct: 169 DALECKK----LHCLSVK----TCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSS 220

Query: 527 VLVWQALLGA 536
           V  W +++  
Sbjct: 221 V-TWSSMVAG 229


>gi|297725471|ref|NP_001175099.1| Os07g0203900 [Oryza sativa Japonica Group]
 gi|255677594|dbj|BAH93827.1| Os07g0203900 [Oryza sativa Japonica Group]
          Length = 721

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 176/498 (35%), Positives = 287/498 (57%), Gaps = 2/498 (0%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
            +LL+FY +  ++  A  LFD MP R  V+WNT++ G  R+    +    F R    G  
Sbjct: 53  TALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVS 112

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               +S + +L AC R E +     +H +  + G+   V VG AL+  Y KC    + ++
Sbjct: 113 P-TASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQ 171

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF EM  +NV T+TA+++G V ++   + + L  +M    + PN +TY S + + +  + 
Sbjct: 172 VFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPED 231

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           +  G+Q+H  + K  L+ D  + SAL+ MYSKCG +E+  ++       D VS   ++ G
Sbjct: 232 IDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNSVISG 291

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
            +  G  +EA Q F++M + G ++D    ++VL   G  +SL  G+Q+H+LI+K  + S 
Sbjct: 292 LSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSV 351

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL 452
             V N LI+MY++ G + +S  VF  M   N VSWNS+++  A+HG+G + +E++E+M+ 
Sbjct: 352 VDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRR 411

Query: 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDMVGRAGLL 511
             V+P  +TFLS+L ACSHVGLV+KG+E+   M +  + +  R EHYAC+VD++GRAG L
Sbjct: 412 LHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYL 471

Query: 512 IEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
            EA   I  MP+KP   V++ALL AC IHG+ E+    +++L    P   + ++ ++N +
Sbjct: 472 NEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAF 531

Query: 572 SCSGRWKERAKAIKRMKE 589
           +  GRW   A+  + M E
Sbjct: 532 AGDGRWGNAAEIREAMSE 549



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 180/360 (50%), Gaps = 14/360 (3%)

Query: 88  ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFL--RNGEFDMGFGFFKR 145
           + V+  +L+  Y KC  +  A ++F +M  ++  ++  +V+GF+  R     M      R
Sbjct: 149 SVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAM---LLVR 205

Query: 146 SLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205
            +E      +  +++ +LS+    E     K +HC V   G E +  V +AL+T Y KCG
Sbjct: 206 EMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCG 265

Query: 206 SSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
              +  KV   +  ++ +++ +VISGL      +E  + F++M     + +  T+ S + 
Sbjct: 266 ILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLK 325

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           A     +L EGRQ+H ++ K+   S + ++++L+ MY++ G++ ++  +F   E  + VS
Sbjct: 326 AIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVS 385

Query: 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHS 382
              ++ G AQ+G  +E +++F +M +  + + P+ ++  L V    + +GL   G +  +
Sbjct: 386 WNSLMSGCAQHGHGKEVVEMFEQMRR--LHVQPDHIT-FLSVLTACSHVGLVDKGLEYFN 442

Query: 383 LIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGN 439
           L+    +       +   ++++  + G L ++  + + M  +   S + ++++A   HGN
Sbjct: 443 LMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGN 502



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 148/324 (45%), Gaps = 20/324 (6%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V  N +  S LLS  A       G  +H + +K     D            + ++L++ Y
Sbjct: 212 VAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQ----------FVLSALVTMY 261

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASF 159
            KC  + N VK+   +  +D VS+N+++SG    G     F  F   LE+  +  D   F
Sbjct: 262 SKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHF---LEMRRHGTDMDVF 318

Query: 160 TI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           T   +L A   S   L  + +H L+   GY+  V V N+LI+ Y + G+      VF  M
Sbjct: 319 TFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISM 378

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
              N+++W +++SG  Q+   +E +++F +M    + P+ +T+LS + ACS +  + +G 
Sbjct: 379 EAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGL 438

Query: 278 QIHGILWKLALQSDLCIE--SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335
           +   ++           E  + ++D+  + G + +A  +        G S+   L+   Q
Sbjct: 439 EYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQ 498

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPN 359
                  +++ +++ K  IE++P+
Sbjct: 499 I---HGNLEIVIRVSKRLIELNPH 519



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 2/148 (1%)

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             SN F    L+  Y +   L ++  +F +M  R +V+WN++I   AR      A+  + 
Sbjct: 45  LASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFA 104

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
            M   GV PT  +  S+L AC  +     G   L S+  +H           +VDM  + 
Sbjct: 105 RMARAGVSPTASSVSSVLVACVRLEDAAAGAT-LHSVGLMHGFCASVVVGTALVDMYAKC 163

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGA 536
             L  A+     M  K +V  + AL+  
Sbjct: 164 HHLGAAQQVFREMEEK-NVATFTALVAG 190


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 283/487 (58%)

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           IL  C R+   + +K  H  +     E +VT+ N LI +Y KCG     R+VF  M  R+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           +++W  +I    +N++  E L +F++M       +  T  S + AC       E +++H 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
           +  K  +  +L + +AL+D+Y+KCG ++DA Q+FE  ++   V+ + ++ G+ QN   EE
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401
           A+ L+ +  +  +E +   +S+V+       +L  GKQ+H++I KS F SN FV +  ++
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVD 306

Query: 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461
           MY+KCG L +S  +FS +  +N   WN++I+ FA+H    + + L+E+M+ +G+ P +VT
Sbjct: 307 MYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 366

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           F SLL  C H GLV +G  F K M   + +SP   HY+C+VD++GRAGLL EA   I+ +
Sbjct: 367 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 426

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  P   +W +LL +C ++ + E+ + AAEKLF  +P++   ++L++NIY+ + +W+E A
Sbjct: 427 PFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIA 486

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K+ K +++  V K  G SWI+I+ +VH+F V +  HP+   I   L  L+      GY P
Sbjct: 487 KSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKP 546

Query: 642 NKRFILH 648
           +    LH
Sbjct: 547 SVEHELH 553



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 211/419 (50%), Gaps = 23/419 (5%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +  +L + A+ G      + H   I+           ++     + N L++ Y KC  + 
Sbjct: 64  VHEILQLCARNGAVMEAKACHGKIIRI----------DLEGDVTLLNVLINAYSKCGFVE 113

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A ++FD M  R  VSWNTM+  + RN         F      GF +  + + + +LSAC
Sbjct: 114 LARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGF-KFSEFTISSVLSAC 172

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
             +  +L  K +HCL      +  + VG AL+  Y KCG      +VF  M+ ++ +TW+
Sbjct: 173 GVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWS 232

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
           ++++G VQN+ YEE L L+ +     +  N  T  S + ACS L AL EG+Q+H ++ K 
Sbjct: 233 SMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS 292

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              S++ + S+ +DMY+KCGS+ +++ IF   +E +      I+ GFA++   +E M LF
Sbjct: 293 GFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILF 352

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV--NNGLINMYS 404
            KM + G+  +    S++L V G    +  G++   L +++ +  +P V   + ++++  
Sbjct: 353 EKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKL-MRTTYGLSPNVVHYSCMVDILG 411

Query: 405 KCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYE--EMKLEGVEPTD 459
           + G L ++ ++   +   P  S+ W S++A+       +K LEL E    KL  +EP +
Sbjct: 412 RAGLLSEAYELIKSIPFDPTASI-WGSLLAS----CRVYKNLELAEVAAEKLFELEPEN 465



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 6/182 (3%)

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416
           + N+V  +L +   + ++   K  H  II+ D   +  + N LIN YSKCG +E + +VF
Sbjct: 60  NRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVF 119

Query: 417 SRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476
             M  R+ VSWN+MI  + R+    +AL+++ EM+ EG + ++ T  S+L AC   G+  
Sbjct: 120 DGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC---GVNC 176

Query: 477 KGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
             +E  K      +       Y    ++D+  + G++ +A    E M  K  V  W +++
Sbjct: 177 DALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSMV 235

Query: 535 GA 536
             
Sbjct: 236 AG 237


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/619 (29%), Positives = 317/619 (51%), Gaps = 62/619 (10%)

Query: 33  TSSTSKLVLDNYVDISRLLSISAK---EGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT 89
           +    +++LD Y  I  L  + +K     H  + P+L    ++ +      +V       
Sbjct: 37  SKEACEVILDQYPGIKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSV------- 89

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
                             A  +FD    ++ V +N M+  ++ N  +      F+  L  
Sbjct: 90  ------------------ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSC 131

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
            F   D  +F  +L AC   +   V   +H  +   G +  + +GNAL+  Y KCG    
Sbjct: 132 AF-NPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLRE 190

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            RKV  +M  R+V++W ++++G  Q+  +++ L++  +M     +  +L + +  MA   
Sbjct: 191 ARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEM-----DSLNLNHDAGTMA--- 242

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                            +L   +C        Y+   +V+    +FE   + + +S  V+
Sbjct: 243 -----------------SLSPVVC--------YTSLENVQYIHNMFERMTKKNLISWNVM 277

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  +  N    EA+ LF++M + G++ D   ++++L   G  ++L LG+++H  I K + 
Sbjct: 278 IAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N  + N L++MY+KCG LE++  VF +M  R+ VSW SM++A+ R G G+ A+ L+ +
Sbjct: 338 RPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAK 397

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G  P  + F+S+L ACSH GL+++G  + + MTE + I PR EH+AC+VD+ GRAG
Sbjct: 398 MLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAG 457

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            + EA SFI++MP++P+  VW ALL AC +H   ++G  AA+ LF   P     Y+L++N
Sbjct: 458 EVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSN 517

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+ +G WK+       MK++G+ K  GIS +E+  QVH+F+  D+ HPQA  I+G L  
Sbjct: 518 IYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDV 577

Query: 630 LLRLMIDEGYVPNKRFILH 648
           L+  M + GY+P     LH
Sbjct: 578 LVGKMKELGYIPQTESALH 596


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/566 (32%), Positives = 295/566 (52%), Gaps = 16/566 (2%)

Query: 42  DNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLK 101
           ++ V +S  L  + +   F  G  LH   +K        +++       + N+L+  Y K
Sbjct: 126 EDVVVLSLALKAAVRSADFGYGRRLHCDVVKA----GGGDLF-------VMNNLVDMYAK 174

Query: 102 CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161
              ++NA K+FD +P R+ VSW +M+SG L+NG    G   F    E+    +  + +T+
Sbjct: 175 GGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFN---EMRQESILPSEYTM 231

Query: 162 --ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC         ++IH  V   G      +  A++  Y KCG +   R+VF E+  
Sbjct: 232 ASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSF 291

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
            +++ WT +I G  QN    + L LFV      I PNS+T  + + A + L+ L  GR I
Sbjct: 292 VDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSI 351

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           HGI  KL    +  + +AL+DMY+KC ++ DA  IF      D V+   ++ G+A+N   
Sbjct: 352 HGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMG 411

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            +A+ LF  M   G   D   V   L        L +GK  H+  +K  F SN +VN  L
Sbjct: 412 SDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTAL 471

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +N+Y+KC DL  + +VFS M  RN+V+W +MI  +   G+   +++L+ EM  + ++P +
Sbjct: 472 LNLYNKCADLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNE 531

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
             F S+L  CSH G+V  G +  +SM     I+P  +HYAC+VD++ RAG L EA  FI+
Sbjct: 532 AVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQ 591

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
           +MP++ D  +WQA L  C +H   E  + A  ++ +  PD+P   ++M+N+Y+  GRW +
Sbjct: 592 KMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCVMMSNLYTSYGRWDK 651

Query: 580 RAKAIKRMKEMGVDKETGISWIEIEK 605
                K MKE G+ K  G S + +E 
Sbjct: 652 SLAIRKLMKERGLVKLPGCSSVGLEN 677


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/604 (29%), Positives = 312/604 (51%), Gaps = 50/604 (8%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N LL+ Y K + M +A KLFD++P R+T +W  ++SGF R G  +M F  F R ++    
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLF-REMQAKGA 386

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC-------- 204
             +Q + + +L  C       + K +H  +   G + +V +GN+++  Y KC        
Sbjct: 387 CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 205 -----------------------GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
                                  G       +F  +  ++V++W  ++ GL+Q       
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHA 506

Query: 242 L-KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
           L +L+  +  G    +++T+  +++  S L  +  GRQ+HG++ K    SD  I S+L++
Sbjct: 507 LEQLYCMVECG-TEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVE 565

Query: 301 MYSKCGSVEDAWQIFE---------------FAEELDG-VSMTVILVGFAQNGFEEEAMQ 344
           MY KCG ++ A  I                 + E   G VS   ++ G+  NG  E+ ++
Sbjct: 566 MYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLK 625

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404
            F  MV+  + +D   V+ ++        L  G+ +H+ + K     + +V + LI+MYS
Sbjct: 626 TFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           K G L+D+  VF +    N V W SMI+ +A HG G  A+ L+EEM  +G+ P +VTFL 
Sbjct: 686 KSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLG 745

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L+ACSH GL+ +G  + + M + + I+P  EH   +VD+ GRAG L + ++FI +  + 
Sbjct: 746 VLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGIS 805

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
               VW++ L +C +H + EMGK+ +E L    P  P  Y+L++N+ + + RW E A+  
Sbjct: 806 HLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVR 865

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKR 644
             M + GV K+ G SWI+++ Q+H+FV+ D+ HPQ D I+  L  L+  + + GY  + +
Sbjct: 866 SLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVK 925

Query: 645 FILH 648
            ++ 
Sbjct: 926 LVMQ 929



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 212/468 (45%), Gaps = 66/468 (14%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N   +S +L   + + +  LG  +HA  ++     D           V+ NS+L  YLKC
Sbjct: 389 NQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVD----------VVLGNSILDLYLKC 438

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR---------------SL 147
                A +LF+ M   D VSWN M+  +LR G+ +     F+R                L
Sbjct: 439 KVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLL 498

Query: 148 ELGF--YQLDQ-------------ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
           + G+  + L+Q              +F+I L          + + +H +V   G++ +  
Sbjct: 499 QCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGF 558

Query: 193 VGNALITSYFKCGSSSSGRKVF----------GEMRVR------NVITWTAVISGLVQNQ 236
           + ++L+  Y KCG       +           G  RV        +++W +++SG V N 
Sbjct: 559 IRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNG 618

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES 296
            YE+GLK F  M   L+  +  T  + + AC+    L  GR +H  + K+  + D  + S
Sbjct: 619 KYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGS 678

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356
           +L+DMYSK GS++DAW +F  + E + V  T ++ G+A +G    A+ LF +M+  G  I
Sbjct: 679 SLIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQG--I 736

Query: 357 DPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDS 412
            PN V+  LGV    +  GL ++   +  ++K  +  NP V +   ++++Y + G L  +
Sbjct: 737 IPNEVT-FLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKT 795

Query: 413 IK-VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
              +F       +  W S +++   H N  +  +   EM L+ V P+D
Sbjct: 796 KNFIFKNGISHLTSVWKSFLSSCRLHKN-VEMGKWVSEMLLQ-VAPSD 841



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 207/464 (44%), Gaps = 58/464 (12%)

Query: 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237
           +H L    G  + +   N L+T Y K  + +  +K+F E+  RN  TWT +ISG  +   
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIES 296
            E    LF +M      PN  T LSSV+ C  L   L  G+ +H  + +  +  D+ + +
Sbjct: 371 SEMVFNLFREMQAKGACPNQYT-LSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGN 429

Query: 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV---------------------------- 328
           +++D+Y KC   E A ++FE   E D VS  +                            
Sbjct: 430 SILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVS 489

Query: 329 ---ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385
              I+ G  Q G+E  A++    MV+ G E      S  L +    + + LG+Q+H +++
Sbjct: 490 WNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVL 549

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDS--------IKVFSRMAPRNS--------VSWNS 429
           K  F S+ F+ + L+ MY KCG ++ +        + V  +   R S        VSW S
Sbjct: 550 KFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGS 609

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           M++ +  +G     L+ +  M  E V     T  +++ AC++ G++  G         V 
Sbjct: 610 MVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHV---HAYVQ 666

Query: 490 RISPRAEHY--ACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
           +I  R + Y  + ++DM  ++G L +A   + R   +P++++W +++   ++HG      
Sbjct: 667 KIGHRIDAYVGSSLIDMYSKSGSLDDAW-MVFRQSNEPNIVMWTSMISGYALHGQGMHAI 725

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCS--GRWKERAKAIKRMKE 589
              E++ L Q   P     +  + +CS  G  +E  +  + MK+
Sbjct: 726 GLFEEM-LNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKD 768


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 301/582 (51%), Gaps = 16/582 (2%)

Query: 48  SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRN 107
           + + S  A   +   G  LH   IK      N+   N+     + N+L+  Y K   ++ 
Sbjct: 414 TSIFSACASLHYLDFGGQLHTVMIK------NKFTSNL----FVANALVDMYAKSGALKE 463

Query: 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167
           A K F+ M + D VSWN ++ G+++    D  F  F+R +  G    D+ S   I+SAC 
Sbjct: 464 ARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLP-DEVSLASIVSACA 522

Query: 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTA 227
             +     +  HCL+   G +     G++LI  Y KCG   + R VF  M  RNV++  A
Sbjct: 523 NVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINA 582

Query: 228 VISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287
           +I+G   + L EE + LF ++ +  + P  +T+   +  C G   L  GRQIHG + K  
Sbjct: 583 LIAGYTMSHL-EEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641

Query: 288 -LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG-VSMTVILVGFAQNGFEEEAMQL 345
            L S   +  +L+ MY       D+  +F   +   G V  T ++ G+AQ    E+A+Q 
Sbjct: 642 FLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQF 701

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           +  M    I  D    ++VL      +SL  G+++HSLI  + F  +    + LI+MY+K
Sbjct: 702 YQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAK 761

Query: 406 CGDLEDSIKVFSRMAPRNSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464
           CGD++ S++VF  M  RNSV SWNSMI   A++G   +ALE++++M+ + + P +VTFL 
Sbjct: 762 CGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLG 821

Query: 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVK 524
           +L ACSH G V++G +    M   +++ PR +H  C+VD++GR G L EA  FI ++  K
Sbjct: 822 VLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584
            D ++W  LLGAC  HGD   GK AA KL   +P S + Y+L++ +Y+ S  W       
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLR 941

Query: 585 KRMKEMGVDKETGISWIEIEKQVHSF-VVDDKMHPQADTIHG 625
           + MK  GV K  G SWIE  + V     V     P   +I G
Sbjct: 942 REMKLKGVKKLPGYSWIEPGRDVQGRGAVRSTAGPGCSSIGG 983



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 254/498 (51%), Gaps = 7/498 (1%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           ++LV D  +++  +   +   G+   G  + A  +K F+    Q V +VP+   +  +++
Sbjct: 196 ARLVFDGALNLDTVSWTTLIAGYVRDGFPMEA--VKVFDKM--QRVGHVPDQIALV-TVI 250

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
           + Y+   ++ +A KLF  +P  + V+WN M+SG  + G  +    FF    + G  +  +
Sbjct: 251 NAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL-KATR 309

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGE 216
           +S   +LSA     +     M+H      G ++ V VG+AL+  Y KC    + ++VF  
Sbjct: 310 SSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNS 369

Query: 217 MRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276
           +  RN++ W A++ G  QN L +E ++ F  M      P+  T+ S   AC+ L  L  G
Sbjct: 370 LGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFG 429

Query: 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN 336
            Q+H ++ K    S+L + +AL+DMY+K G++++A + FEF +  D VS   I+VG+ Q 
Sbjct: 430 GQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQE 489

Query: 337 GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
            + +EA  +F +MV  G+  D   +++++           G+Q H L++K    ++    
Sbjct: 490 EYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAG 549

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
           + LI+MY KCG +  +  VF  M  RN VS N++IA +    +  +A+ L++E+++ G++
Sbjct: 550 SSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTM-SHLEEAIHLFQEIQMVGLK 608

Query: 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARS 516
           PT+VTF  LL  C    ++N G +    + +   +S        ++ M   +    ++ +
Sbjct: 609 PTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSET 668

Query: 517 FIERMPVKPDVLVWQALL 534
               +     ++VW AL+
Sbjct: 669 LFSELQYPKGLVVWTALI 686



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 210/445 (47%), Gaps = 38/445 (8%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           ++ N ++  Y+KC  +  A K F  +  +D  +WN+++S +L +G F      F      
Sbjct: 77  LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNH 136

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + ++ +F ++LSAC   +     K +HC V+  G+         LI  Y KC +   
Sbjct: 137 GV-RPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRD 195

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
            R VF      + ++WT +I+G V++    E +K+F KM      P+ +  ++       
Sbjct: 196 ARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVT------- 248

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
                                       +++ Y   G + DA ++F      + V+  V+
Sbjct: 249 ----------------------------VINAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G A+ GF EEA+  F+++ K G++   + + +VL      + L  G  +H+  IK   
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGL 340

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N +V + L+NMY+KC  ++ + +VF+ +  RN V WN+M+  FA++G   + +E +  
Sbjct: 341 DDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSY 400

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           MK  G +P + TF S+  AC+ +  ++ G +    M + ++ +        +VDM  ++G
Sbjct: 401 MKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIK-NKFTSNLFVANALVDMYAKSG 459

Query: 510 LLIEARSFIERMPVKPDVLVWQALL 534
            L EAR   E M +  +V  W A++
Sbjct: 460 ALKEARKQFEFMKIHDNV-SWNAII 483



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 188/392 (47%), Gaps = 47/392 (11%)

Query: 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLV 233
            +K+IH      G   +  +GN ++  Y KCG+    +K F  +  ++V  W +V+S  +
Sbjct: 59  TAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYL 118

Query: 234 QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC 293
            + L+   ++ FV M    + PN  T+   + ACSGLQ +  G+Q+H  ++K+       
Sbjct: 119 DHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSF 178

Query: 294 IESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
            +  L+DMY+KC ++ DA  +F+ A  LD VS T ++ G+ ++GF  EA+++F KM + G
Sbjct: 179 CQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVG 238

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
               P+ ++ V                                  +IN Y   G L D+ 
Sbjct: 239 HV--PDQIALVT---------------------------------VINAYVALGRLADAR 263

Query: 414 KVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473
           K+F+++   N V+WN MI+  A+ G   +A+  + E+K  G++ T  +  S+L A + + 
Sbjct: 264 KLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLS 323

Query: 474 LVNKGMEFLKSMTEVHRISPRAEHY----ACVVDMVGRAGLLIEARSFIERMPVKPDVLV 529
           ++N G     SM     I    +      + +V+M  +   +  A+     +  + ++++
Sbjct: 324 MLNYG-----SMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGER-NIVL 377

Query: 530 WQALLGACSIHGDSE--MGKYAAEKLFLAQPD 559
           W A+LG  + +G ++  M  ++  K    QPD
Sbjct: 378 WNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPD 409



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 124/275 (45%), Gaps = 37/275 (13%)

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           LQAL   + IH    K+ +     + + ++D+Y KCG+V+ A + F   E+ D  +   +
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L  +  +G     +Q FV M   G+  +    + VL        +  GKQ+H  + K  F
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGF 173

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
               F   GLI+MY+KC +L D+  VF      ++VSW ++IA + R G   +A++++++
Sbjct: 174 GFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDK 233

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M+  G  P  +  +++++A  +V L                                  G
Sbjct: 234 MQRVGHVPDQIALVTVINA--YVAL----------------------------------G 257

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
            L +AR    ++P  P+V+ W  ++   +  G +E
Sbjct: 258 RLADARKLFTQIP-NPNVVAWNVMISGHAKRGFAE 291


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/564 (32%), Positives = 301/564 (53%), Gaps = 42/564 (7%)

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC-- 180
           WNT++               F + L  G Y  +  +F  +  +C +S+ +  +K +H   
Sbjct: 95  WNTLIRAHSLTPTPTSSLHLFSQMLHSGLYP-NSHTFPSLFKSCAKSKATHEAKQLHAHA 153

Query: 181 -----------------------------LVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
                                        LV+      +     ALIT Y   G     R
Sbjct: 154 LKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDAR 213

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
           ++F E+  ++V++W A+I+G VQ+  +EE L  F +M    ++PN  T +S + AC  L+
Sbjct: 214 RLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLR 273

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           +L  G+ I   +       +L + +AL+DMYSKCG +  A ++F+  E+ D +    ++ 
Sbjct: 274 SLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIG 333

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           G+      EEA+ LF  M++  +   PN V+  AVL       +L LGK +H+ I K + 
Sbjct: 334 GYCHLSLYEEALVLFEVMLRENVT--PNDVTFLAVLPACASLGALDLGKWVHAYIDK-NL 390

Query: 390 TSNPFVNN-----GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444
                VNN      +I MY+KCG +E + +VF  M  R+  SWN+MI+  A +G+  +AL
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERAL 450

Query: 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504
            L+EEM  EG +P D+TF+ +L AC+  G V  G  +  SM + + ISP+ +HY C++D+
Sbjct: 451 GLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDL 510

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564
           + R+G   EA+  +  M ++PD  +W +LL AC IHG  E G+Y AE+LF  +P++   Y
Sbjct: 511 LARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAY 570

Query: 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIH 624
           +L++NIY+ +GRW + AK   ++ + G+ K  G + IEI+  VH F+V DK HPQ++ I 
Sbjct: 571 VLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIF 630

Query: 625 GVLAELLRLMIDEGYVPNKRFILH 648
            +L E+ RL+ + G+VP+   +L+
Sbjct: 631 RMLDEVDRLLEETGFVPDTSEVLY 654



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 194/398 (48%), Gaps = 25/398 (6%)

Query: 60  FHLGPSLHASFIKTFEP----------FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            HL P +H S I  +            FD   + +     V + +L++ Y+    + +A 
Sbjct: 158 LHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRD----AVSFTALITGYVSEGHVDDAR 213

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD++P +D VSWN M++G++++G F+     F R  E      +Q++   +LSAC   
Sbjct: 214 RLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSP-NQSTMVSVLSACGHL 272

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               + K I   V   G+ + + + NAL+  Y KCG   + RK+F  M  ++VI W  +I
Sbjct: 273 RSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMI 332

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK---- 285
            G     LYEE L LF  M    + PN +T+L+ + AC+ L AL  G+ +H  + K    
Sbjct: 333 GGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKG 392

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
               +++ + ++++ MY+KCG VE A Q+F         S   ++ G A NG  E A+ L
Sbjct: 393 TGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGL 452

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMY 403
           F +M+  G + D      VL        + LG +  S + K D+  +P + +   +I++ 
Sbjct: 453 FEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNK-DYGISPKLQHYGCMIDLL 511

Query: 404 SKCGDLEDSIKVFS--RMAPRNSVSWNSMIAAFARHGN 439
           ++ G  +++  +     M P  ++ W S++ A   HG 
Sbjct: 512 ARSGKFDEAKVLMGNMEMEPDGAI-WGSLLNACRIHGQ 548



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 45/363 (12%)

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           N+  W  +I            L LF +M H GL  PNS T+ S   +C+  +A  E +Q+
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLY-PNSHTFPSLFKSCAKSKATHEAKQL 149

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV-------- 331
           H    KLAL     + ++L+ MYS+ G +  A  +F+ +   D VS T ++         
Sbjct: 150 HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHV 209

Query: 332 -----------------------GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368
                                  G+ Q+G  EEA+  F +M +A +  + + + +VL   
Sbjct: 210 DDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269

Query: 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWN 428
           G   SL LGK I S +    F  N  + N L++MYSKCG++  + K+F  M  ++ + WN
Sbjct: 270 GHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWN 329

Query: 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM-------EF 481
           +MI  +       +AL L+E M  E V P DVTFL++L AC+ +G ++ G        + 
Sbjct: 330 TMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN 389

Query: 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
           LK    V+ +S     +  ++ M  + G +  A      M  +  +  W A++   +++G
Sbjct: 390 LKGTGNVNNVSL----WTSIIVMYAKCGCVEVAEQVFRSMGSR-SLASWNAMISGLAMNG 444

Query: 542 DSE 544
            +E
Sbjct: 445 HAE 447



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 25/227 (11%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINM--YSKCGDLEDSIKVFSRM--APRNSVSWNSMIAA 433
           KQIHSLIIKS   +  F  + LI     S   DL  ++ +F  +   P N   WN++I A
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVH 489
            +       +L L+ +M   G+ P   TF SL  +C+     ++  +     LK    +H
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
              P    +  ++ M  + G L  AR   ++  ++ D + + AL+      G  +     
Sbjct: 162 ---PHV--HTSLIHMYSQVGELRHARLVFDKSTLR-DAVSFTALITGYVSEGHVD----D 211

Query: 550 AEKLFLAQPDSPAPYILMANI----YSCSGRWKERAKAIKRMKEMGV 592
           A +LF    + PA  ++  N     Y  SGR++E      RM+E  V
Sbjct: 212 ARRLF---DEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADV 255


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 183/547 (33%), Positives = 290/547 (53%), Gaps = 18/547 (3%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF-FKRSLEL 149
           + N+L++ Y +   +  A ++FD+MP RD VSWN M+ G  ++G+        F R L+ 
Sbjct: 177 VGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLLKD 236

Query: 150 GFYQL--DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           G   +  D+ S   ++ AC       + + +H      G E +V++GN L+  Y+K G++
Sbjct: 237 GGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKSGAA 296

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              RK+   M  R+VI+WT  IS        E+ ++LF  M    + PN +T+++ +   
Sbjct: 297 GCARKLLKSMDERDVISWTTAIS----MDGEEDAIELFNGMRQDGVPPNEVTFVALM--- 349

Query: 268 SGLQALCE---GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324
           S L A C    G+ IH +  K  +  +    ++L+ MY+K   ++DA  +F+     + +
Sbjct: 350 SALAAGCPARYGQMIHTVCLKTGVSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEII 409

Query: 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSL 383
           +   ++ G+AQN    EA+Q+F  MV+     +    S +  V  V+T S+  G+  H  
Sbjct: 410 AWNALISGYAQNELCNEALQVFSCMVRCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQ 469

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
            +K     + +V+  LI+MY+K G LE+S K F     R+ ++W ++I+A A+HGN    
Sbjct: 470 SLKLGLKVSEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAIISAHAKHGNYDTV 529

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           + L+++M   GV P  V  LS+L AC H G VN G E   SM   H + P  EHYACV+D
Sbjct: 530 MNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPAEHHVEPWPEHYACVID 589

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M+GRAG L EA   + +MP  P V   Q+LLGAC IHG++ + +  A  L   +P     
Sbjct: 590 MLGRAGRLEEAEELMLQMPTGPSVSALQSLLGACRIHGNTSIAERVAGILTETEPTESGA 649

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEK----QVHSFVVDDKMHPQ 619
           Y+L++NIY+  G W   AK  + M+E GV KE G SW++        +H F  DD  HP 
Sbjct: 650 YVLLSNIYAEKGDWGGVAKVRREMREKGVRKEIGFSWVDFGAGESLHLHKFSSDDTTHPC 709

Query: 620 ADTIHGV 626
            + I+ V
Sbjct: 710 TEEIYRV 716



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 232/465 (49%), Gaps = 26/465 (5%)

Query: 91  IWNSLLSFYLK-CDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           + NSL + Y K      +A K+F     RD  S+NT++S     GE      F    L  
Sbjct: 74  VTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSALPDRGE---ALAFAAWMLRS 130

Query: 150 GFYQLDQASFTIILS-ACDRSELSLV--SKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206
           G  + D  + T+ LS A  R E   V   + +H L    G   +V VGNAL+T+Y +   
Sbjct: 131 GDVRPDAVTLTVALSLAASRGEADGVWIVRQLHALASRSGLVADVFVGNALVTAYSRGAL 190

Query: 207 SSSGRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM---HLGLINPNSLTYLS 262
             + R+VF EM  R++++W A+I GL Q+     E + +F+++       + P+ ++  S
Sbjct: 191 LGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLLKDGGAAVRPDRISVCS 250

Query: 263 SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELD 322
            + AC     +  GRQ+H    KL ++  + I + L+ MY K G+   A ++ +  +E D
Sbjct: 251 VIPACGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKSGAAGCARKLLKSMDERD 310

Query: 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQI 380
            +S T  +   + +G EE+A++LF  M + G+   PN V+  A++           G+ I
Sbjct: 311 VISWTTAI---SMDG-EEDAIELFNGMRQDGVP--PNEVTFVALMSALAAGCPARYGQMI 364

Query: 381 HSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNG 440
           H++ +K+  +      N LI MY+K   ++D+  VF RM     ++WN++I+ +A++   
Sbjct: 365 HTVCLKTGVSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEIIAWNALISGYAQNELC 424

Query: 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG---MEFLKSMTEVHRISPRAEH 497
            +AL+++  M +  + P + TF S+L A + V  V+     M   +S+    ++S     
Sbjct: 425 NEALQVFSCM-VRCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQSLKLGLKVSEYVS- 482

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
              ++DM  + G L E+R   + + V   ++ W A++ A + HG+
Sbjct: 483 -GALIDMYAKRGSLEESRKAFD-VTVHRSLIAWTAIISAHAKHGN 525



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 16/171 (9%)

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           +H L I S   +  FV N L   Y+K       + KVF     R+  S+N++++A    G
Sbjct: 59  LHGLAIASGLDAFSFVTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSALPDRG 118

Query: 439 NGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
              +AL     M   G V P  VT    L   +  G  + G+  ++   ++H ++ R+  
Sbjct: 119 ---EALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEAD-GVWIVR---QLHALASRSGL 171

Query: 498 YA------CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            A       +V    R  LL  AR   + MP + D++ W A++   +  GD
Sbjct: 172 VADVFVGNALVTAYSRGALLGAARRVFDEMPAR-DLVSWNAMICGLAQDGD 221


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 322/617 (52%), Gaps = 25/617 (4%)

Query: 34  SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWN 93
           SSTSK+       I  L+S+++   H      +H S I           +++ + T + N
Sbjct: 8   SSTSKVQ-----QIKTLISVASTFNHL---KQVHVSLIH----------HHLHHDTFLVN 49

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
            LL   L   Q   +  LF      +   +NT+++GF+ N  F      F    + G   
Sbjct: 50  LLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGL-N 108

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L   +F ++L AC R+    +   +H LV  CG+  +V    +L++ Y   G  +   KV
Sbjct: 109 LHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKV 168

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273
           F E+  R+V+TWTA+ SG      + E + LF KM    + P+S   +  + AC  +  L
Sbjct: 169 FEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDL 228

Query: 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
             G  I   + ++ +Q +  + + L+++Y+KCG +E A  +F+   E D V+ + ++ G+
Sbjct: 229 DSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGY 288

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
           A N F +E ++ F++M++  ++ D   +   L       +L LG+   SLI + +F +N 
Sbjct: 289 ASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNL 348

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
           F+ N LI+MY+KCG +    +VF  M  ++ V  N+ I+  A++G+   +  ++ + +  
Sbjct: 349 FMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKL 408

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
           G+ P   TFL LL  C H GL+  G+ F  +++ V+ +    EHY C+VD+ GRAG+L +
Sbjct: 409 GISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDD 468

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
           A   I  MP++P+ +VW ALL  C +  D+++ +   ++L   +P +   Y+ ++NIYS 
Sbjct: 469 AYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSV 528

Query: 574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAEL--- 630
           SGRW E A+    M   G+ K  G SWIE+E  VH F+ DDK HP +D I+  L +L   
Sbjct: 529 SGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNE 588

Query: 631 LRLMIDEGYVPNKRFIL 647
           +RLM   G+VP   F+ 
Sbjct: 589 MRLM---GFVPTTEFVF 602


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 303/556 (54%), Gaps = 54/556 (9%)

Query: 90  VIWNSLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           V WN+LL+   +  + +  A +LFDDMP R+ +SWN++V+G L +G+ D    +F R+  
Sbjct: 39  VSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARA-- 96

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVG-NALITSYFKCGSS 207
               + + AS+  +L+   R     + +M           +   V    ++    + G  
Sbjct: 97  ---PRRNVASWNAMLAGLVR-----LGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEV 148

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
           +  R+VF  M  RN+++W A+I+G V+N +++E  KLF  M      P+      +V+AC
Sbjct: 149 ARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAM------PDK-----NVVAC 197

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +                            A++  Y K G VE A ++F+     D +S  
Sbjct: 198 T----------------------------AMITGYCKDGDVESARRLFDGIPVKDVISWN 229

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++ G+  NG  EEAM+L + M + G++ D   + A+L        L  G+  H++  K+
Sbjct: 230 AMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKT 289

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              S+    N L+ MYSKCG++ +S  VF  +  ++ VSWN++IAA+A+HG   KA+ L+
Sbjct: 290 MLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALF 349

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            EM+  G+ P D+T LS+L AC HVG VN  +E    M+  + ISP AEHYACVVD++GR
Sbjct: 350 HEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGR 409

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L +A S+I++MP + +  VW ALLGA   HG+ ++G+ AA+ L  +   S  PY+++
Sbjct: 410 AGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVML 469

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+ +G W E  +   +MKE GV K+ G SW EI  +V+ FV  D  HP+ + I   L
Sbjct: 470 SNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISEL 529

Query: 628 AEL---LRLMIDEGYV 640
            ++   +++M DE ++
Sbjct: 530 RKISFHMQMMTDETHM 545



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GL 252
           N  IT+  + G  ++ R+VF  M  R+V++W A+++      L+  G  L     L   +
Sbjct: 11  NQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTA-----LWRAGRDLPAARRLFDDM 65

Query: 253 INPNSLTYLSSVMACSGLQALCEGR-QIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
            + N +++ S V  C     L  G        +  A + ++   +A++    + G ++DA
Sbjct: 66  PSRNVISWNSVVAGC-----LAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDA 120

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
           W +F    + + VS T ++ G A+ G    A ++F  M +  +     M++  +     D
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            +  L + +           N      +I  Y K GD+E + ++F  +  ++ +SWN+MI
Sbjct: 181 EARKLFEAMPD--------KNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMI 232

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
             +  +G+G +A++L+  M  EGV+P   T +++L ACS + L+ +G       T+   +
Sbjct: 233 TGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTM-L 291

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
                    ++ M  + G + E+      + ++ D++ W  ++ A + HG
Sbjct: 292 ESSTSFCNALMTMYSKCGNVGESELVFMNLKIQ-DIVSWNTIIAAYAQHG 340



 Score = 45.4 bits (106), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G S HA   KT           + ++T   N+L++ Y KC  +  +  +F ++ ++D VS
Sbjct: 279 GRSTHAVATKTM----------LESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVS 328

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           WNT+++ + ++G++      F      G    D    + +LSAC
Sbjct: 329 WNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILS-MLSAC 371


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 297/563 (52%), Gaps = 31/563 (5%)

Query: 116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
           P R T SW   +    R+ +F      +   + +   + D  +F  +L A    +     
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIE-MTVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 176 KMIHCLVYLCGY-EEEVTVGNALITSYFKCGS--------------------SSSGRKVF 214
           + IH      GY    VTV N L+  Y KCG                         + +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
                R++++W  +IS   Q+  + E L  F  M L  +  + +T  S + ACS L+ L 
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231

Query: 275 EGRQIHG-ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
            G++IH  +L    L  +  + SAL+DMY  C  VE   ++F+            ++ G+
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 334 AQNGFEEEAMQLFVKMVK-AGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIKSDFTS 391
           A+NG +E+A+ LF++M+K AG+  +   +++V+        ++  GK+IH+  I++   S
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS 351

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
           +  V + L++MY+KCG L  S +VF+ M  +N ++WN +I A   HG G +ALEL++ M 
Sbjct: 352 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMV 411

Query: 452 LEG-----VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
            E       +P +VTF+++  ACSH GL+++G+     M   H + P ++HYACVVD++G
Sbjct: 412 AEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLG 471

Query: 507 RAGLLIEARSFIERMPVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565
           RAG L EA   +  MP + D V  W +LLGAC IH + E+G+ AA+ L   +P+  + Y+
Sbjct: 472 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 531

Query: 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHG 625
           L++NIYS +G W +  +  K M++MGV KE G SWIE   +VH F+  D  HPQ++ +HG
Sbjct: 532 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHG 591

Query: 626 VLAELLRLMIDEGYVPNKRFILH 648
            L  L   M  EGYVP+   +LH
Sbjct: 592 FLETLSEKMRKEGYVPDTSCVLH 614



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/419 (31%), Positives = 215/419 (51%), Gaps = 21/419 (5%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK 144
           + + T   N+L++ Y K  ++ ++  LF+    RD VSWNTM+S F ++  F     FF 
Sbjct: 144 IGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF- 202

Query: 145 RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITSYFK 203
           R + L   +LD  +   +L AC   E   V K IH  V       E   VG+AL+  Y  
Sbjct: 203 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 262

Query: 204 CGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLS 262
           C    SGR+VF  +  R +  W A+ISG  +N L E+ L LF++M  +  + PN+ T  S
Sbjct: 263 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322

Query: 263 SVMAC-SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL 321
            + AC   L A+ +G++IH    +  L SD+ + SAL+DMY+KCG +  + ++F      
Sbjct: 323 VMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK 382

Query: 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA---GIEIDPNMVSAVLGVFGVDTSLGLGK 378
           + ++  V+++    +G  EEA++LF  MV     G E  PN V+  + VF   +  GL  
Sbjct: 383 NVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVT-FITVFAACSHSGLIS 441

Query: 379 QIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRM-APRNSV-SWNSMIA 432
           +  +L   +K D    P  ++   ++++  + G LE++ ++ + M A  + V +W+S++ 
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501

Query: 433 AFARHGNGFKALELYE--EMKLEGVEPTDVTFLSLL-HACSHVGLVNKGMEFLKSMTEV 488
           A   H N    +EL E     L  +EP   +   LL +  S  GL NK ME  K+M ++
Sbjct: 502 ACRIHQN----VELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQM 556


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 303/554 (54%), Gaps = 18/554 (3%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NS+ S Y +C +M  A ++FD    RD VSWN ++SG++R G  +     F      G  
Sbjct: 141 NSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHG-- 198

Query: 153 QLDQASFTI--ILSACDRSELSL---------VSKMIHCLVYLCGYEEEVTVGNALITSY 201
            L   SF +  I+  C  S             +++ +H  V   G + ++ + +A+I  Y
Sbjct: 199 -LGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMY 257

Query: 202 FKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ---LYEEGLKLFVKMHLGLINPNSL 258
            K G+ ++   +F  +   NVI   A+I+G  + +   +  E L L+ ++    + P+  
Sbjct: 258 AKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEF 317

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           ++ S + AC+       G+QIHG + K + Q D+ I SAL+D+YS  G +ED ++ F   
Sbjct: 318 SFSSILRACNLAGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSL 377

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
            + D V  T ++ G  QN   EEA++LF + V+ G+  D   +S+V+           G+
Sbjct: 378 PKQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGE 437

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           QI  L +KS F     + N  I+M ++ GD++ + + F  M  R+ VSW+++I++ A HG
Sbjct: 438 QIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHG 497

Query: 439 NGFKALELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497
               AL ++ EM   +   P ++TFLS+L ACSH GLV++G+ +   M + + +SP  +H
Sbjct: 498 CARDALCVFNEMLDAKVAPPNEITFLSILTACSHGGLVDEGLRYYGIMNDEYGLSPTIKH 557

Query: 498 YACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557
             CVVD++GRAG L +A +FI       D +VW++LL +C IHGD E G+  A+K+   +
Sbjct: 558 CTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADKIMDLE 617

Query: 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMH 617
           P S A Y+++ N+Y  +G     +K    MKE GV KE G+SWIE+   VHSFV  DK H
Sbjct: 618 PTSSASYVILYNMYLDAGELSSASKTRDLMKERGVKKEPGLSWIELSSGVHSFVAGDKSH 677

Query: 618 PQADTIHGVLAELL 631
           P++  I+  +AE++
Sbjct: 678 PESKAIYRKVAEMV 691



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 246/506 (48%), Gaps = 22/506 (4%)

Query: 86  PNATV-IWNSLLSFY--LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           PNA++ + N LL+ Y  L      +A +L D+MP R+ VS+N ++  + R G   +    
Sbjct: 30  PNASLFLRNCLLASYCRLGVGAPLHAARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLAT 89

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202
           F R+       +D+ ++   L+AC R+      K +H +V L G    + + N++ + Y 
Sbjct: 90  FARARAWARV-VDRFTYAAALAACSRALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYA 148

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS 262
           +CG     R+VF     R+ ++W A++SG V+    EE L++F  M    +  NS    S
Sbjct: 149 RCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGLGWNSFALGS 208

Query: 263 SVMACSGLQA------LCEGR---QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            +  C+   +      +  GR    +HG + K  L +DL + SA++DMY+K G++ +A  
Sbjct: 209 IIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVA 268

Query: 314 IFEFAEELDGVSMTVILVGFAQN---GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           +F+   + + + +  ++ GF +        EA+ L+ ++   G++      S++L    +
Sbjct: 269 LFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNL 328

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
               G GKQIH  ++K  F  + ++ + LI++YS  G +ED  + F  +  ++ V W S+
Sbjct: 329 AGEFGFGKQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSV 388

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG--MEFLKSMTEV 488
           I+   ++    +AL L++E    G+ P      S+++AC+ + +   G  ++ L   +  
Sbjct: 389 ISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGF 448

Query: 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKY 548
           +R +     +   + M  R+G +  A    + M  + DV+ W A++ + + HG +     
Sbjct: 449 NRFTAMGNSF---IHMCARSGDVDAATRRFQEMESR-DVVSWSAVISSHAHHGCARDALC 504

Query: 549 AAEKLFLAQPDSPAPYILMANIYSCS 574
              ++  A+   P     ++ + +CS
Sbjct: 505 VFNEMLDAKVAPPNEITFLSILTACS 530


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/478 (37%), Positives = 282/478 (58%), Gaps = 4/478 (0%)

Query: 173 LVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGL 232
           L  K IHCLV   G+E +V V  +L+  Y + G     RK+F +M  R+  +W A+ISG 
Sbjct: 11  LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGY 70

Query: 233 VQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDL 292
            QN    E L +  +M L  +  +++T  S +  C+ +  +  G+ IH  + K  L+ +L
Sbjct: 71  CQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFEL 130

Query: 293 CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352
            + +AL++MY+K GS+  A ++F    + D VS   ++ G+AQNG   EA+++++ M + 
Sbjct: 131 FVSNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLM-EE 188

Query: 353 GIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410
             EI PN  +  ++L  +    +L  G +IH  +IK+   S+ FV   LI+MY KCG L+
Sbjct: 189 HEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLD 248

Query: 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470
           D+I +F ++  +NSV WN+MI+ +  HG+G KALEL+ EMK E V+P  +TF+SLL ACS
Sbjct: 249 DAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACS 308

Query: 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW 530
           H GLV+        M E + I P  +HY C+VD+ GRAG L  A +FI++MP++PD   W
Sbjct: 309 HSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAW 368

Query: 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
            ALL AC IHG+ E+GK+A+E+LF    ++   Y+L++NIY+  G+W+         ++ 
Sbjct: 369 GALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDR 428

Query: 591 GVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           G+ K  G S I +  +V  F   ++ HP+ + I+  L +L   +   GYVP+  F+L 
Sbjct: 429 GLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQ 486



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 185/351 (52%), Gaps = 9/351 (2%)

Query: 94  SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153
           SL+  Y +   + +A KLFDDMP RD  SWN M+SG+ +NG            + L   +
Sbjct: 34  SLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALD-IADEMRLEGVK 92

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           +D  +   +L  C +    L  K+IH  V   G E E+ V NALI  Y K GS    +KV
Sbjct: 93  MDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKV 152

Query: 214 FGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKM--HLGLINPNSLTYLSSVMACSGLQ 271
           FG + +++V++W  +I+G  QN L  E +++++ M  H  +I PN  T++S + A S + 
Sbjct: 153 FG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEII-PNQGTWVSILPAYSHVG 210

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
           AL +G +IHG + K  L SD+ + + L+DMY KCG ++DA  +F      + V    ++ 
Sbjct: 211 ALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMIS 270

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
            +  +G  E+A++LF +M    ++ D     ++L      + L    Q    +++ ++  
Sbjct: 271 CYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACS-HSGLVSDAQWCFNMMEEEYGI 329

Query: 392 NPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARHGN 439
            P + +   +++++ + G+LE +     +M  + ++ +W +++ A   HGN
Sbjct: 330 KPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGN 380



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 156/282 (55%), Gaps = 7/282 (2%)

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           V AC  L    +G++IH ++ KL  + D+ + ++L+ MYS+ G V DA ++F+     D 
Sbjct: 4   VKACGDL---LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDR 60

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
            S   ++ G+ QNG   EA+ +  +M   G+++D   V++VL V      +  GK IH  
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLY 120

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           +IK       FV+N LINMY+K G L  + KVF  +  ++ VSWN++I  +A++G   +A
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEA 179

Query: 444 LELYEEM-KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502
           +E+Y  M + E + P   T++S+L A SHVG + +GM     + + + +        C++
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIK-NCLYSDVFVGTCLI 238

Query: 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544
           DM G+ G L +A S   ++P K  V  W A++    +HGD E
Sbjct: 239 DMYGKCGKLDDAISLFYQVPRKNSV-PWNAMISCYGVHGDGE 279


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 273/457 (59%), Gaps = 3/457 (0%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           V N LI  Y K       R+ F +   ++  TW+++IS   QN+L    L+   KM  G 
Sbjct: 52  VANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGS 111

Query: 253 INPNSLTYLSSVMACSGLQALCE-GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311
           + P+     S+  +C G+ + C+ G+ +H +  K    +D+ + S+L+DMY+KCG +  A
Sbjct: 112 LRPDDHVLPSATKSC-GILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYA 170

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
            ++F+     + V+ + ++ G+AQ G  EEA+ LF + +   + ++    S V+ V    
Sbjct: 171 RKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANS 230

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
           T L LG+QI  L IKS F S+ FV + L+++YSKCGDLE + +VF  +  RN   WN+M+
Sbjct: 231 TLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAML 290

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
            A A+H +  K +EL++ MKL G++P  +TFL++L+ACSH GLV++G  +   M E  RI
Sbjct: 291 KACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMKE-SRI 349

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
            P  +HYA +VDM+GRAG L EA   +  MP+ P   VW ALL +C+IH ++E+  +AA+
Sbjct: 350 EPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAAD 409

Query: 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFV 611
           K+F   P S   +I ++N Y+  GR+++ AKA K +++ G  KETG+SW+E   +VH+F 
Sbjct: 410 KVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFA 469

Query: 612 VDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             ++ H ++  I+  LAEL   M   GYV +  ++L 
Sbjct: 470 AGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLR 506



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/420 (28%), Positives = 207/420 (49%), Gaps = 34/420 (8%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NY  I  LL  SA+      G  LH   +K+        +  +P   ++ N+L++FY K 
Sbjct: 14  NYNQICDLLLSSARSRSIVKGLQLHGYIVKS-------GLSLIP---LVANNLINFYSKS 63

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKR----SLELGFYQLDQAS 158
               ++ + F+D P +   +W++++S F +N    M   F ++    SL    + L  A+
Sbjct: 64  QLPFDSRRAFEDSPQKSATTWSSIISCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSAT 123

Query: 159 FTI-ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
            +  ILS CD      + K +HCL    GY+ +V VG++L+  Y KCG     RK+F EM
Sbjct: 124 KSCGILSRCD------IGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEM 177

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
            +RNV+TW+ ++ G  Q    EE L LF +     +  N  ++ + +  C+    L  GR
Sbjct: 178 PLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLELGR 237

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           QI G+  K +  S   + S+L+ +YSKCG +E A+Q+F+     +      +L   AQ+ 
Sbjct: 238 QIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHS 297

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPF 394
             ++ ++LF +M  +G++  PN ++  L V    +  GL   GK    L+ +S       
Sbjct: 298 HTQKVIELFKRMKLSGMK--PNFIT-FLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDK 354

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN----GFKALELYE 448
               L++M  + G LE+++++ + M   P  SV W +++ +   H N     F A +++E
Sbjct: 355 HYASLVDMLGRAGKLEEALEIVTNMPIDPTESV-WGALLTSCTIHKNTELAAFAADKVFE 413


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 279/505 (55%), Gaps = 11/505 (2%)

Query: 148 ELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           E+GF+  D      +L+AC         + +H  +    Y     +   L+  Y KC   
Sbjct: 48  EIGFHCYDA-----LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCL 102

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
              RKV  EM  +NV++WTA+IS   Q     E L +F +M      PN  T+ + + +C
Sbjct: 103 EDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSC 162

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
                L  G+QIHG++ K    S + + S+L+DMY+K G +E+A +IFE   E D VS T
Sbjct: 163 IRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCT 222

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLII 385
            I+ G+AQ G +EEA+++F ++   G+   PN V+  ++L        L  GKQ H  ++
Sbjct: 223 AIIAGYAQLGLDEEALEMFQRLQSEGMR--PNYVTYASLLTALSGLALLDHGKQAHCHVL 280

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           + +      + N LI+MYSKCG+L  + ++F  M  R ++SWN+M+  +++HG G + LE
Sbjct: 281 RRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLE 340

Query: 446 LYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE-VHRISPRAEHYACVVD 503
           L+  M+ E  V+P  VT L++L  CSH  + + G+     M    + I P  EHY C+VD
Sbjct: 341 LFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVD 400

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           M+GRAG + EA  FI+RMP KP   V  +LLGAC +H   ++G+Y   +L   +P++   
Sbjct: 401 MLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGN 460

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y++++N+Y+ +GRW++       M +  V KE G SWI+ E+ +H F  +D+ HP+ + +
Sbjct: 461 YVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 520

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
              + E+   M   GYVP+   +L+
Sbjct: 521 LAKMKEISIKMKQAGYVPDISCVLY 545



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 189/365 (51%), Gaps = 18/365 (4%)

Query: 63  GPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTV 121
           G  +HA  IKT + P           AT +   LL FY KCD + +A K+ D+MP ++ V
Sbjct: 70  GQRVHAHMIKTRYLP-----------ATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVV 118

Query: 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCL 181
           SW  M+S + + G        F   +     + ++ +F  +L++C R+    + K IH L
Sbjct: 119 SWTAMISRYSQTGHSSEALSVFAEMMRSDG-KPNEFTFATVLTSCIRASGLALGKQIHGL 177

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           +    Y+  + VG++L+  Y K G     R++F  +  R+V++ TA+I+G  Q  L EE 
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           L++F ++    + PN +TY S + A SGL  L  G+Q H  + +  L     ++++L+DM
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 297

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           YSKCG++  A ++F+   E   +S   +LVG++++G   E ++LF ++++    + P+ V
Sbjct: 298 YSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF-RLMRDEKRVKPDAV 356

Query: 362 S--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFS 417
           +  AVL           G  I+  ++  ++   P   +   +++M  + G ++++ +   
Sbjct: 357 TLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIK 416

Query: 418 RMAPR 422
           RM  +
Sbjct: 417 RMPSK 421



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 11/204 (5%)

Query: 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395
           NG  +EA+   ++MV  G EI  +   A+L       +L  G+++H+ +IK+ +    ++
Sbjct: 32  NGRLQEAL---LEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYL 88

Query: 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
              L+  Y KC  LED+ KV   M  +N VSW +MI+ +++ G+  +AL ++ EM     
Sbjct: 89  RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG 148

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY---ACVVDMVGRAGLLI 512
           +P + TF ++L +C     +  G +    + + +  S    H    + ++DM  +AG + 
Sbjct: 149 KPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDS----HIFVGSSLLDMYAKAGQIE 204

Query: 513 EARSFIERMPVKPDVLVWQALLGA 536
           EAR   E +P + DV+   A++  
Sbjct: 205 EAREIFECLPER-DVVSCTAIIAG 227



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 10/129 (7%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           NYV  + LL+  +       G   H   ++   PF            V+ NSL+  Y KC
Sbjct: 252 NYVTYASLLTALSGLALLDHGKQAHCHVLRRELPF----------YAVLQNSLIDMYSKC 301

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +  A +LFD+MP R  +SWN M+ G+ ++G        F+   +    + D  +   +
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 163 LSACDRSEL 171
           LS C   ++
Sbjct: 362 LSGCSHGKM 370


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 282/501 (56%), Gaps = 7/501 (1%)

Query: 153 QLDQASFTI-----ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           +LDQ S  +     +L AC RS      + +H  +   G+++ + + N ++  Y KCG  
Sbjct: 25  RLDQGSREVTEYLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGM 84

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               + F EM+ RN+++W AVIS   QN    + + +F++M L  I P+ +T+ S + A 
Sbjct: 85  EDLSRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAF 144

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +G +     + +H +  ++   S   + +AL++MYSK GS++ A Q+F+     D VS +
Sbjct: 145 AGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWS 204

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  +AQ G   EA+++F +M   GI+ +     AV+    +   +   + IH  II++
Sbjct: 205 NMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEA 264

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              SN  +   L+NMY KCG L ++ K+F ++  R+ V W++++ A+ARHG+   AL+L+
Sbjct: 265 GLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLF 324

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EGV P DVTF+ +L AC H G V +G     S+   H + P A H  C++DM+GR
Sbjct: 325 TLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGR 384

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA SFI RMPVK + + W   LG+C  +GD E GK AAEK+F   P   A Y+ +
Sbjct: 385 AGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTL 444

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGV-DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           A++Y+ +G   E A+A+ R+ E     KE G S I +  +VH F V  + HPQA  I+  
Sbjct: 445 ASMYTDAG-MPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSY 503

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           L  L    ++ GYVP+ R +L
Sbjct: 504 LDVLHARALELGYVPDTRPLL 524



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 189/382 (49%), Gaps = 19/382 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  + T     +Q+V        + N +L  Y KC  M +  + F +M  R+ VS
Sbjct: 52  GRRLHARIVAT----GHQDV------MFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVS 101

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN ++S + +N         F R L  G  Q    +FT +L+A    EL   +K++H L 
Sbjct: 102 WNAVISAYAQNDRSSDAIVIFLRMLLDGI-QPSYVTFTSVLNAFAGPELHRWAKLVHDLA 160

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G+     V  AL+  Y K GS    R+VF E+ +++V++W+ +I+   Q     E L
Sbjct: 161 LEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEAL 220

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           ++F +M    I  N +T+++ V AC  +  + + R IH  + +  L+S+  + +AL++MY
Sbjct: 221 EMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMY 280

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG + +A +IF+   E D V  + IL  +A++G    A++LF  M + G+   PN V+
Sbjct: 281 GKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVR--PNDVT 338

Query: 363 AVLGVFGVDTSLGL---GK-QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            V GV       G    G+    SL+   +        + +++M  + G LE++    +R
Sbjct: 339 FV-GVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIAR 397

Query: 419 MAPR-NSVSWNSMIAAFARHGN 439
           M  +  +++W+  + +   +G+
Sbjct: 398 MPVKEEAITWSIFLGSCRSYGD 419


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 295/572 (51%), Gaps = 47/572 (8%)

Query: 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT 160
           K  ++ +A +LFD+MP +DTV+WN M++ + + G        F   + +   + D+ +FT
Sbjct: 17  KLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH-MRIANSRPDRFTFT 75

Query: 161 IILSAC-DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             LSAC    EL    K IH  V + G +  + VGN+LI  Y KC S++S R+VF EM +
Sbjct: 76  ATLSACAGLGELRRGMK-IHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSI 134

Query: 220 RNVITWTAV-------------------------------ISGLVQNQLYEEGLKLFVKM 248
            N ++W ++                               ISG  Q    E  L LF KM
Sbjct: 135 MNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKM 194

Query: 249 HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI-ES----------A 297
               + P+  T+ + V A   LQ    G  +HG + K      + + ES          A
Sbjct: 195 REDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNA 254

Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
           ++D + K G   +A+ +F+ A E + VS T ++ G+A+NG  E+A+  FVKM++  I+ D
Sbjct: 255 MIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPD 314

Query: 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417
                AVL       +LG GK IH  II   F +   V NGL+NMY+KCGD++ S   F 
Sbjct: 315 DFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFK 374

Query: 418 RMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477
            +  ++ VSWN+M+     HG+  +ALELYEEM   G++P  VTF+ LL  CSH GL+ K
Sbjct: 375 EILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEK 434

Query: 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV--KPDVLVWQALLG 535
           G    +SM  V+ +S   EH  C+VD++GR G L +AR  ++      + +  + +ALLG
Sbjct: 435 GQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLG 494

Query: 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
           AC  H +  MG    E L + +P     Y+L++N+Y  SG+WKE     K M + GV K 
Sbjct: 495 ACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKM 554

Query: 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
            G SWIE+  +V  FV  +  HP  + +  +L
Sbjct: 555 PGCSWIEVRNKVTVFVAGNHSHPYMEELCKIL 586



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 190/419 (45%), Gaps = 45/419 (10%)

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           I +  K G  +S R++F EM  ++ + W A+++   Q  L+++ L LF  M +    P+ 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE- 316
            T+ +++ AC+GL  L  G +IH  +     QS L + ++L+DMY KC S   A ++FE 
Sbjct: 72  FTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEE 131

Query: 317 -------------FAEELDG-----------------VSMTVILVGFAQNGFEEEAMQLF 346
                        FA    G                 ++  +++ G+ Q G  E  + LF
Sbjct: 132 MSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLF 191

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-------FTSNPFVN--- 396
            KM +  ++ D    SA++           G  +H  IIKS        F S   +    
Sbjct: 192 KKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVS 251

Query: 397 -NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
            N +I+ + K GD  ++  VF     +N VSW SMI  +AR+G+G +AL  + +M    +
Sbjct: 252 WNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHI 311

Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515
           +P D TF ++LHACS +  +  G     S+   +      +    +V+M  + G +  + 
Sbjct: 312 QPDDFTFGAVLHACSSLATLGHGKMIHGSIIH-YGFHAYVDVGNGLVNMYAKCGDIQGSN 370

Query: 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           +  + +  K D++ W A+L    +HG +       E++ +A    P     +  + +CS
Sbjct: 371 TAFKEILGK-DLVSWNAMLFGLGMHGHATQALELYEEM-VASGMKPDKVTFIGLLMTCS 427



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 146/280 (52%), Gaps = 14/280 (5%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V W SLL  Y        A  +FD MP +  ++WN M+SG+ + G+ ++  G FK+  E 
Sbjct: 138 VSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMRED 197

Query: 150 GFYQLDQASFTIILSA-CDRSELSLVSKMIHCLVYLCGYEEEVTV-----------GNAL 197
              Q DQ +F+ +++A C+  E S    M+H  +   G+++ + V            NA+
Sbjct: 198 SL-QPDQWTFSALVNALCELQEPSY-GYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAM 255

Query: 198 ITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
           I ++ K G +     VF     +NV++WT++I+G  +N   E+ L  FVKM    I P+ 
Sbjct: 256 IDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDD 315

Query: 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317
            T+ + + ACS L  L  G+ IHG +      + + + + L++MY+KCG ++ +   F+ 
Sbjct: 316 FTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKE 375

Query: 318 AEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357
               D VS   +L G   +G   +A++L+ +MV +G++ D
Sbjct: 376 ILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPD 415



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 1/179 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN+++  ++K      A  +F   P ++ VSW +M++G+ RNG  +    FF + +E 
Sbjct: 250 VSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMME- 308

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              Q D  +F  +L AC         KMIH  +   G+   V VGN L+  Y KCG    
Sbjct: 309 NHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQG 368

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
               F E+  +++++W A++ GL  +    + L+L+ +M    + P+ +T++  +M CS
Sbjct: 369 SNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCS 427



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 2/151 (1%)

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S+ F     I   +K G +  + ++F  M  +++V+WN+M+A++++ G   +AL L+  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           ++    P   TF + L AC+ +G + +GM+ + +   V            ++DM G+   
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMK-IHAQVVVSGCQSSLPVGNSLIDMYGKCLS 121

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHG 541
              AR   E M +  +V  W +LL A +  G
Sbjct: 122 ATSARRVFEEMSIMNEV-SWCSLLFAYTSSG 151


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/521 (33%), Positives = 296/521 (56%), Gaps = 5/521 (0%)

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           T+ +NT+++ +  +      F  + R +  GF   D  +F ++L AC +       + +H
Sbjct: 70  TLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVP-DMYTFPVVLKACTKFLGVQEGEQVH 128

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            +    G+  ++ V N+L+  Y  CG      +VF EM VR+V++WT +ISG V+  L++
Sbjct: 129 GVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFD 188

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E + LF+KM    + PN  T++S ++AC  +  L  G+ +HG+++K A    L + +AL+
Sbjct: 189 EAINLFLKMD---VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALV 245

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMY KC  + +A ++F+   + D VS T I+ G  Q    +++++LF  M  +G+E D  
Sbjct: 246 DMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRI 305

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           ++++VL       +L  G+ +   I +     +  +   L++MY+KCG +E ++ +F+ +
Sbjct: 306 ILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGI 365

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RN  +WN+++   A HG+G +AL+ +E M   G+ P +VTFL++L AC H GLV +G 
Sbjct: 366 PNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGR 425

Query: 480 EFLKSM-TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            +   M ++    SPR EHY C++D++ RAGLL EA  FI  MP+ PDVL+W ALL AC 
Sbjct: 426 SYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACK 485

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            +G+ E+ +     L   +      Y+L++NIY+ + RW +  +  + MK+ G+ K  G 
Sbjct: 486 ANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGS 545

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
           S IE++ + H F+V D  H + + IH +L  L   +  EG+
Sbjct: 546 SVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEGH 586



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 195/365 (53%), Gaps = 15/365 (4%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + NSLL FY  C +   A ++FD+M +RD VSW  ++SG++R G FD     F +   + 
Sbjct: 142 VQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVVP 201

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
               + A+F  +L AC R     + K +H LVY   +   + VGNAL+  Y KC      
Sbjct: 202 ----NVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEA 257

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           RK+F E+  R++++WT++ISGLVQ +  ++ L+LF  M +  + P+ +   S + AC+ L
Sbjct: 258 RKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASL 317

Query: 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
            AL  GR +   + +  ++ D+ I +AL+DMY+KCG +E A  IF      +  +   +L
Sbjct: 318 GALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALL 377

Query: 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSD 388
            G A +G   EA++ F  M+ AGI   PN V+  A+L        +  G+     +I   
Sbjct: 378 GGLAMHGHGHEALKHFELMIGAGIR--PNEVTFLAILTACCHSGLVAEGRSYFYQMISQP 435

Query: 389 FTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALE 445
           F  +P + +   +I++  + G L+++ K    M  P + + W ++++A   +GN    +E
Sbjct: 436 FNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGN----VE 491

Query: 446 LYEEM 450
           L +E+
Sbjct: 492 LSQEI 496



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 25/245 (10%)

Query: 40  VLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFY 99
           V+ N      +L    + G+  +G  +H    K          + +    V+ N+L+  Y
Sbjct: 199 VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYK--------RAFGI--GLVVGNALVDMY 248

Query: 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQL----- 154
           +KC+ +  A KLFD++P RD VSW +++SG ++  +        K SLEL FY +     
Sbjct: 249 VKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQ-------PKDSLEL-FYDMQISGV 300

Query: 155 --DQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D+   T +LSAC         + +   +   G E ++ +G AL+  Y KCG       
Sbjct: 301 EPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALH 360

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           +F  +  RN+ TW A++ GL  +    E LK F  M    I PN +T+L+ + AC     
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGL 420

Query: 273 LCEGR 277
           + EGR
Sbjct: 421 VAEGR 425


>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
          Length = 591

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 170/493 (34%), Positives = 277/493 (56%), Gaps = 4/493 (0%)

Query: 153 QLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SS 209
           +LD  +FTI  +L AC   +     +++H L    G +  + V NAL+  Y  C  S   
Sbjct: 88  ELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDD 147

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VF  + ++N ++WT +I+G         GL++F +M L  +  N  ++  +V AC+ 
Sbjct: 148 ACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTS 207

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           + +   G Q+H  + K   +S+L + ++++DMY +C    +A + F    + D ++   +
Sbjct: 208 IGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTL 267

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           + G+ ++    E++ +F  M   G   +    ++++        L  G+QIH  II+   
Sbjct: 268 IAGYERSN-PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGL 326

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
             N  ++N LI+MYSKCG++ DS +VF  M+ R+ VSW +M+  +  HG G +A+EL+++
Sbjct: 327 DGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDK 386

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M   G+ P  V F+++L ACSH GLV++G+ + K M   + ISP  E Y CVVD++GRAG
Sbjct: 387 MVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAG 446

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            + EA   IE MP KPD  VW   LGAC  H    +GK AA ++   +P     Y++++N
Sbjct: 447 KVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSN 506

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
           IY+  G+W E A+  K MK MG  KETG SW+E+   V+SFVV D++  + + I+ VL  
Sbjct: 507 IYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLEN 566

Query: 630 LLRLMIDEGYVPN 642
           L+  M + GYVP+
Sbjct: 567 LIGHMKESGYVPD 579



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 183/351 (52%), Gaps = 11/351 (3%)

Query: 93  NSLLSFYLKCD-QMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFK--RSLEL 149
           N+L+  Y  C   M +A  +F  + +++ VSW T+++G+      D G+G  +  R + L
Sbjct: 132 NALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHR---DDGYGGLRVFRQMLL 188

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
              +L+  SF+I + AC         + +H  V   G+E  + V N+++  Y +C   S 
Sbjct: 189 EEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSE 248

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             + F EM  R++ITW  +I+G  ++    E L +F  M     +PN  T+ S + AC+ 
Sbjct: 249 ANRYFYEMNQRDLITWNTLIAGYERSNP-TESLYVFSMMESEGFSPNCFTFTSIMAACAT 307

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G+QIHG + +  L  +L + +AL+DMYSKCG++ D+ Q+F      D VS T +
Sbjct: 308 LAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAM 367

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           ++G+  +G+ EEA++LF KMV++GI  D  +  A+L        +  G +   L++  D+
Sbjct: 368 MIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMV-GDY 426

Query: 390 TSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAPR-NSVSWNSMIAAFARH 437
             +P   +   ++++  + G +E++ ++   M  + +   W   + A   H
Sbjct: 427 NISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAH 477



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 198/426 (46%), Gaps = 35/426 (8%)

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           +   LI SYF       G+ + GE           +I+G      +     +F +M    
Sbjct: 45  LATTLIKSYF-------GKGLIGE---------ALMIAGYTSCNNHTHAWMVFCEMMNEE 88

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG-SVEDA 311
           ++PN+ T  S + AC G++ L  GR +HG+  K  L   + +++ALMDMY+ C  S++DA
Sbjct: 89  LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDA 148

Query: 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371
             +F      + VS T ++ G+         +++F +M+   +E++P   S  +      
Sbjct: 149 CMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSI 208

Query: 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
            S   G+Q+H+ + K  F SN  V N +++MY +C    ++ + F  M  R+ ++WN++I
Sbjct: 209 GSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLI 268

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI 491
           A + R  N  ++L ++  M+ EG  P   TF S++ AC+ +  +N G +    +      
Sbjct: 269 AGYER-SNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLD 327

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
              A   A ++DM  + G + ++      M  + D++ W A++     HG  E      +
Sbjct: 328 GNLALSNA-LIDMYSKCGNIADSHQVFGGMS-RRDLVSWTAMMIGYGTHGYGEEAVELFD 385

Query: 552 KLFLA--QPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
           K+  +  +PD     + MA + +CS  G   E  +  K M         G   I  ++++
Sbjct: 386 KMVRSGIRPDR---VVFMAILSACSHAGLVDEGLRYFKLM--------VGDYNISPDQEI 434

Query: 608 HSFVVD 613
           +  VVD
Sbjct: 435 YGCVVD 440



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 15/261 (5%)

Query: 58  GHFHLGPSLHASFIK-TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116
           G    G  LHA+  K  FE        N+P    + NS+L  Y +C     A + F +M 
Sbjct: 209 GSHTFGEQLHAAVTKHGFES-------NLP----VMNSILDMYCRCSCFSEANRYFYEMN 257

Query: 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            RD ++WNT+++G+ R+   +  + F    +E   +  +  +FT I++AC         +
Sbjct: 258 QRDLITWNTLIAGYERSNPTESLYVF--SMMESEGFSPNCFTFTSIMAACATLAFLNCGQ 315

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
            IH  +   G +  + + NALI  Y KCG+ +   +VFG M  R++++WTA++ G   + 
Sbjct: 316 QIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHG 375

Query: 237 LYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG-RQIHGILWKLALQSDLCIE 295
             EE ++LF KM    I P+ + +++ + ACS    + EG R    ++    +  D  I 
Sbjct: 376 YGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIY 435

Query: 296 SALMDMYSKCGSVEDAWQIFE 316
             ++D+  + G VE+A+++ E
Sbjct: 436 GCVVDLLGRAGKVEEAYELIE 456


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/516 (33%), Positives = 288/516 (55%), Gaps = 4/516 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N+L+S Y+ C  +  A  +F  M  R  VSWN +++G ++NG  +     F     
Sbjct: 143 TYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAA 202

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G   +D+A+   +L AC +++     + +H LV   G  + V V NALI  Y KC S  
Sbjct: 203 DGV-GIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 209 SGRKVFGEMRV-RNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
             R+VF   +  ++V++WTA+I   V N    E + L  +M + G   PN +T +  + A
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ + +    +  H +  +L L+SD+ +E+AL+D Y++CG ++      E        + 
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGS-WRAETW 380

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
              L G+  +G E++A++LF +M+   +  D   ++++L  +     L  GK IH  ++ 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F  +  +  GLI++YSK GDL+ +  +F  +  ++ V+W ++IA ++ HG+   A+ L
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILL 500

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           Y+ M   G +P  VT  +LL+ACSH G++++G++  K M  VH + P  EHY+C+VDM+G
Sbjct: 501 YDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLG 560

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG + EA   I+ MP +P   VW ALLGAC +H + E G+ AA++LF   P++   Y+L
Sbjct: 561 RAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVL 620

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           + NIY+ + RW++     + M E G+ KE G S +E
Sbjct: 621 LGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVE 656



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 241/516 (46%), Gaps = 40/516 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLEL-- 149
           + L   Y  C +  +A  L   MP    VS+ N+++  +        G G  + +L +  
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSY-------TGLGCHREALAVYS 101

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  +F     AC    L    + +HC     G+  +  V NALI+ Y  CG   +
Sbjct: 102 AMRAFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGA 161

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VFG MR R V++W AVI+G V+N   E  L++F +M    +  +  T +S + AC+ 
Sbjct: 162 AEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQ 221

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTV 328
            + L  GR +H ++    L   + +++AL+DMY KC S+EDA ++F+  + + D VS T 
Sbjct: 222 AKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLII 385
           ++  +  N    EA+ L  +M+ +G    PN V+ V  +     S+  GK     H+L I
Sbjct: 282 MIGAYVLNDRAFEAISLGCQMLMSGAAW-PNGVTMVY-LLSACASMPSGKHAKCTHALCI 339

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +    S+  V   LI+ Y++CG ++       R + R + +WN+ ++ +   G   KA+E
Sbjct: 340 RLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIE 398

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG---------MEFLKSMTEVHRISPRAE 496
           L++ M  E V P   T  S+L A +    + +G         + FL+S TE+        
Sbjct: 399 LFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRS-TEI-------- 449

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               ++D+  +AG L  A +  + +P K DV+ W  ++   SIHG +       +++ + 
Sbjct: 450 -ATGLIDVYSKAGDLDAAWALFQWLPEK-DVVAWTTIIAGYSIHGHARTAILLYDRM-VE 506

Query: 557 QPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEM 590
               P    +   +Y+CS  G   E  K  K M+ +
Sbjct: 507 SGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNV 542


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/505 (34%), Positives = 279/505 (55%), Gaps = 14/505 (2%)

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLV--------YLCGYEEEVTVGNALITSYFKC 204
           + D  S T ++  C R   +   ++IH  V        Y  G    + V N+L++ Y K 
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQ-NQLYEEGLKLFVKMHLGLINPNSLTYLSS 263
           G      ++F  M  RNV+TWT V++ L   +   EE L+  V M    + PN+ T+ S 
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323
           + AC     L     +H    K+ L SD+ + S+L+D Y K G ++   ++F+     D 
Sbjct: 189 LGACGTPGVLA---ALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDL 245

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383
           V    I+ GFAQ+G    A++LF++M  AG   +   +++VL        L  G+Q+H+ 
Sbjct: 246 VVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAH 305

Query: 384 IIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKA 443
           ++K  +  +  ++N L++MY KCG LED+  +F RM  R+ +SW++MI+  A++G   +A
Sbjct: 306 VLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEA 363

Query: 444 LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503
           L +++ MK EGV P  +T + +L ACSH GLV  G  + +SM ++  I P  EH+ C+VD
Sbjct: 364 LRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVD 423

Query: 504 MVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563
           ++GRAG L EA  FI  M ++PD ++W+ LLGAC +H    +  YAA ++   +PD    
Sbjct: 424 LLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGA 483

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
            +L++N Y+   +W +  K+ K M++ G+ KE G SWIE+EK VH F+  D  HP +DTI
Sbjct: 484 RVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTI 543

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
              L  L+  +   GYVP   F+L 
Sbjct: 544 VQELNRLIGRISALGYVPQTEFVLQ 568



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 209/423 (49%), Gaps = 23/423 (5%)

Query: 45  VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN--VPNATVIWNSLLSFYLKC 102
           V ++RL+ +  + G    G  +H    +  E     + Y+        + NSL+S Y K 
Sbjct: 73  VSLTRLVKLCVRHGTAGDGRLIH----RHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLR-NGEFDMGFGFFKRSLELGFYQLDQASFTI 161
             + +A++LFD MP R+ V+W T+V+     +G  +    F       G    +  +F+ 
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAP-NAYTFSS 187

Query: 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRN 221
           +L AC       V   +H      G + +V V ++LI +Y K G    GR+VF EM  R+
Sbjct: 188 VLGACGTPG---VLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRD 244

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           ++ W ++I+G  Q+      ++LF++M     + N  T  S + AC+G+  L  GRQ+H 
Sbjct: 245 LVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHA 304

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            +  L  + DL + +AL+DMY KCGS+EDA  +F    + D +S + ++ G AQNG   E
Sbjct: 305 HV--LKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAE 362

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ--IHSLIIKSDFTSNPFV--NN 397
           A+++F  M   G+   PN ++ V GV    +  GL +    +   +K  F   P    +N
Sbjct: 363 ALRVFDLMKSEGVA--PNRITMV-GVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHHN 419

Query: 398 GLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
            ++++  + G L+++++    M    ++V W +++ A   H +G   L  Y   ++  +E
Sbjct: 420 CMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSG--NLAAYAAREILKLE 477

Query: 457 PTD 459
           P D
Sbjct: 478 PDD 480


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/516 (33%), Positives = 287/516 (55%), Gaps = 4/516 (0%)

Query: 89  TVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE 148
           T + N+L+S Y+ C  +  A  +F  M  R  VSWN +++G ++NG  +     F     
Sbjct: 143 TYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAA 202

Query: 149 LGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            G   +D+A+   +L AC +++     + +H LV   G  + V V NALI  Y KC S  
Sbjct: 203 DGV-GIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 209 SGRKVFGEMRV-RNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMA 266
             R+VF   +  ++V++WTA+I   V N    E + L  +M + G   PN +T +  + A
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSM 326
           C+ + +    +  H +  +L L+SD+ +E+AL+D Y++CG ++      E        + 
Sbjct: 322 CASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGS-WRAETW 380

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
              L G+  +G E++A++LF +M+   +  D   ++++L  +     L  GK IH  ++ 
Sbjct: 381 NAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLT 440

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             F  +  +  GLI++YSK GDL+ +  +F  +  ++ V+W ++IA +  HG+   A+ L
Sbjct: 441 LGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILL 500

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           Y+ M   G +P  VT  +LL+ACSH G++++G++  K M  VH + P  EHY+C+VDM+G
Sbjct: 501 YDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLG 560

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           RAG + EA   I+ MP +P   VW ALLGAC +H + E G+ AA++LF   P++   Y+L
Sbjct: 561 RAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVL 620

Query: 567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           + NIY+ + RW++     + M E G+ KE G S +E
Sbjct: 621 LGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVE 656



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 240/516 (46%), Gaps = 40/516 (7%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSW-NTMVSGFLRNGEFDMGFGFFKRSLEL-- 149
           + L   Y  C +  +A  L   MP    VS+ N+++  +        G G  + +L +  
Sbjct: 49  HPLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSY-------TGLGCHREALAVYS 101

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                D  +F     AC    L    + +HC     G+  +  V NALI+ Y  CG   +
Sbjct: 102 AMRAFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGA 161

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
              VFG MR R V++W AVI+G V+N   E  L++F +M    +  +  T +S + AC+ 
Sbjct: 162 AEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQ 221

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE-ELDGVSMTV 328
            + L  GR +H ++    L   + +++AL+DMY KC S+EDA ++F+  + + D VS T 
Sbjct: 222 AKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTA 281

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ---IHSLII 385
           ++  +  N    EA+ L  +M+ +G    PN V+ V  +     S+  GK     H+L I
Sbjct: 282 MIGAYVLNDRAFEAISLGCQMLMSGAAW-PNGVTMVY-LLSACASMPSGKHAKCTHALCI 339

Query: 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445
           +    S+  V   LI+ Y++CG ++       R + R + +WN+ ++ +   G   KA+E
Sbjct: 340 RLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWR-AETWNAALSGYTVSGREKKAIE 398

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG---------MEFLKSMTEVHRISPRAE 496
           L++ M  E V P   T  S+L A +    + +G         + FL+S TE+        
Sbjct: 399 LFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRS-TEI-------- 449

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
               ++D+  +AG L  A +  + +P K DV+ W  ++    IHG +       +++ + 
Sbjct: 450 -ATGLIDVYSKAGDLDAAWALFQWLPEK-DVVAWTTIIAGYGIHGHARTAILLYDRM-VE 506

Query: 557 QPDSPAPYILMANIYSCS--GRWKERAKAIKRMKEM 590
               P    +   +Y+CS  G   E  K  K M+ +
Sbjct: 507 SGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNV 542


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 197/605 (32%), Positives = 327/605 (54%), Gaps = 22/605 (3%)

Query: 18  SSLVSPFITK-IIQDPTSSTSKLVLDNY-VDISRLLSI---SAKEGHFHLGPSLHASFIK 72
           +SLVS  +T  +++D   +   ++     V+++ L+SI      E     G  +H   +K
Sbjct: 189 NSLVSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLK 248

Query: 73  TFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLR 132
               F   +V N+ NA      L+  Y K   + +++ +F+ M  ++ VSWN+ +  F  
Sbjct: 249 ----FGLNSVVNLGNA------LVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAH 298

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSELSLVSKMIHCLVYLCGYEEE 190
            G  +     F+   E   + +   S T+  +L A        + K +H        E +
Sbjct: 299 AGFHEDVLEMFRLMSE---HDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESD 355

Query: 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL 250
           + + N L+  Y K G S     +F  + VRNV++W A+I+ L QN    E  +L ++M  
Sbjct: 356 IFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQK 415

Query: 251 GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
               PNS T ++ + ACS + ++  G+QIH    + +L SDL + +AL+D+Y+KCG +  
Sbjct: 416 NGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNL 475

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A  IF+ +E+ DGVS   ++VG++Q+    E++ LF +M  AGIE D       L     
Sbjct: 476 ARYIFDRSEK-DGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSN 534

Query: 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSM 430
            ++   GK+IH +++K    S+PF+ N L+++Y+K G L+ + K+F+R+  ++  SWN+M
Sbjct: 535 LSAFKQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTM 594

Query: 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           I  +  HG    A EL++ MK +G+E   V+++++L  CSH GLV++G ++   M     
Sbjct: 595 ILGYGMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMI-AQN 653

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           I P+  HYAC+VD++GRAG L E+   I  MP + +  VW ALLG+C IHGD E+ + AA
Sbjct: 654 IKPQQMHYACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAA 713

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           E LF  +P++   Y L+ N+YS SG W E     K MK   V K    SW++   ++ +F
Sbjct: 714 EHLFELKPENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQAF 773

Query: 611 VVDDK 615
           +V D+
Sbjct: 774 LVGDE 778



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 144/457 (31%), Positives = 239/457 (52%), Gaps = 20/457 (4%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++FY  C +  +A ++FD+MP RD VSWN++VS  L NG  +      KR++ +G  
Sbjct: 158 NTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDA----KRAV-VGMM 212

Query: 153 Q----LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
           +    ++ AS   IL AC           +H LV   G    V +GNAL+  Y K G   
Sbjct: 213 RSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLE 272

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
           S   VF  M+ +N ++W + I        +E+ L++F  M    + P S+T  S + A  
Sbjct: 273 SSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALV 332

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
            L     G+++HG   + A++SD+ I + LMDMY+K G  E A  IFE  E  + VS   
Sbjct: 333 DLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNA 392

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ++    QNG E EA +L ++M K G   +   +  +L       S+ +GKQIH+  I+  
Sbjct: 393 MIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIRRS 452

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
             S+ FV+N LI++Y+KCG L  +  +F R + ++ VS+N++I  +++    F++L L++
Sbjct: 453 LMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQ 511

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPRAEHYACVVDM 504
           +M+L G+E   V+F+  L ACS++    +G E     +K + + H     +     ++D+
Sbjct: 512 QMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLLDSHPFLANS-----LLDV 566

Query: 505 VGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
             + G+L  A     R+  K DV  W  ++    +HG
Sbjct: 567 YTKGGMLDTASKIFNRITQK-DVASWNTMILGYGMHG 602



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 170/337 (50%), Gaps = 13/337 (3%)

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           +V  GN L+T Y  CG ++  R+VF EM  R+V++W +++S L+ N + E+  +  V M 
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMM 212

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309
              +  N  + +S + AC   +    G  +HG++ K  L S + + +AL+DMY K G +E
Sbjct: 213 RSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLE 272

Query: 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369
            +  +F   +E + VS    +  FA  GF E+ +++F  M +  +      +S++L    
Sbjct: 273 SSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALV 332

Query: 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNS 429
                 LGK++H   I+    S+ F+ N L++MY+K G  E +  +F  +  RN VSWN+
Sbjct: 333 DLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNA 392

Query: 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
           MIA   ++G   +A  L  EM+  G  P   T ++LL ACS V  V  G        ++H
Sbjct: 393 MIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMG-------KQIH 445

Query: 490 RISPRAEHYA------CVVDMVGRAGLLIEARSFIER 520
             S R    +       ++D+  + G L  AR   +R
Sbjct: 446 AWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR 482



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 158/328 (48%), Gaps = 6/328 (1%)

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY---LSSVMACSGLQALC 274
           R+R+   W ++   L    L  E L+++ +M    + P+  T+   L +  A +  +   
Sbjct: 76  RLRSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPA 135

Query: 275 EGRQIHGI-LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGF 333
           +G ++H   L +  L +D+   + L+  Y+ CG   DA ++F+     D VS   ++   
Sbjct: 136 KGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSAL 195

Query: 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
             NG  E+A +  V M+++G+ ++   + ++L   G +   G G  +H L++K    S  
Sbjct: 196 LTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVV 255

Query: 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
            + N L++MY K GDLE S+ VF+ M  +N VSWNS I  FA  G     LE++  M   
Sbjct: 256 NLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEH 315

Query: 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
            V P  VT  SLL A   +G  + G E L   +    +         ++DM  + G   +
Sbjct: 316 DVTPGSVTLSSLLPALVDLGYFHLGKE-LHGYSIRRAVESDIFIANTLMDMYAKFGCSEK 374

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHG 541
           A +  E + V+ +V+ W A++   + +G
Sbjct: 375 ASAIFENIEVR-NVVSWNAMIANLTQNG 401


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 283/501 (56%), Gaps = 7/501 (1%)

Query: 153 QLDQASFTI-----ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207
           +LDQ S  +     +L AC RS+     + +H  +   G+++ + + N ++  Y KCG  
Sbjct: 25  RLDQGSREVTEYLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGM 84

Query: 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               + F  M+ RN+++W AVIS   QN    + + +F++M L  I P+ +T+ S + A 
Sbjct: 85  EDLSRAFSGMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAF 144

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
           +G +     + +H +  ++   S   + +AL++MYSK GS++ A Q+F+     D VS +
Sbjct: 145 AGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWS 204

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
            ++  +AQ G   EA+++F +M   GI+ +      V+    +   +   + IH  II++
Sbjct: 205 NMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEA 264

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
              SN  +   L+NMY KCG L ++ K+F ++A R+ V W++++ A+ARHG+   AL+L+
Sbjct: 265 GLESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLF 324

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
             M+ EGV P DVTF+ +L AC H G V +G     S+   H + P A H  C++DM+GR
Sbjct: 325 TLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGR 384

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AG L EA SFI RMPVK + + W   LG+C  +GD E GK AAEK+F   P   A Y+ +
Sbjct: 385 AGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTL 444

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGV-DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
           A++Y+ +G   E A+A+ R+ E     KE G S I +  +VH F V  + HPQA  I+  
Sbjct: 445 ASMYTDAG-MPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSY 503

Query: 627 LAELLRLMIDEGYVPNKRFIL 647
           L EL    ++ GYVP+ R +L
Sbjct: 504 LDELHARALELGYVPDTRPLL 524



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 188/382 (49%), Gaps = 19/382 (4%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G  LHA  + T     +Q+V        + N +L  Y KC  M +  + F  M  R+ VS
Sbjct: 52  GRRLHARIVAT----GHQDV------MFLANHILIMYGKCGGMEDLSRAFSGMKRRNIVS 101

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182
           WN ++S + +N         F R L  G  Q    +FT +L+A    EL   +K++H L 
Sbjct: 102 WNAVISAYAQNDRSSDAIVIFLRMLLDGI-QPSYVTFTSVLNAFAGPELHRWAKLVHDLA 160

Query: 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
              G+     V  AL+  Y K GS    R+VF E+ +++V++W+ +I+   Q     E L
Sbjct: 161 LEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEAL 220

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           ++F +M    I  N +T+++ V AC  +  + + R IH  + +  L+S+  + +AL++MY
Sbjct: 221 EMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMY 280

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
            KCG + +A +IF+   E D V  + IL  +A++G    A++LF  M + G+   PN V+
Sbjct: 281 GKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVR--PNDVT 338

Query: 363 AVLGVFGVDTSLGL---GK-QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
            V GV       G    G+    SL+   +        + +++M  + G LE++    +R
Sbjct: 339 FV-GVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIAR 397

Query: 419 MAPR-NSVSWNSMIAAFARHGN 439
           M  +  +++W+  + +   +G+
Sbjct: 398 MPVKEEAITWSIFLGSCRSYGD 419


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/606 (31%), Positives = 323/606 (53%), Gaps = 47/606 (7%)

Query: 86  PNATVIWNSLLSFYL---KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
           PN     + LL F +     D +  A+ +F+ +P  + + WN M  G   + +       
Sbjct: 3   PNTHYAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKL 62

Query: 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE-------------- 188
           +   + LG    +  +F  +L +C +S+     + IH  V   G++              
Sbjct: 63  YVVMISLGLLP-NFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYA 121

Query: 189 -----------------EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISG 231
                             +V    ALIT Y   G   S +K+F E+ +++V++W A+ISG
Sbjct: 122 QNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISG 181

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             +   Y++ L+LF +M    + P+  T  + V AC+   ++  GRQ+H  +      S+
Sbjct: 182 YAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSN 241

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
           L I +AL+D+YSKCG VE A ++ E     D +S   ++ G+      +EA+ LF +M++
Sbjct: 242 LKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 301

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKS----DFTSNPFVNNGLINMYS 404
           +G    PN V+ +L +      LG   +G+ IH  I K       T+   +   LI+MY+
Sbjct: 302 SGET--PNDVT-MLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYA 358

Query: 405 KCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463
           KCGD++ + +V    A   S+S WN+MI  FA HG    A +++  M+  G+EP D+TF+
Sbjct: 359 KCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFV 418

Query: 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523
            LL ACSH G+++ G    +SM + + I+P+ EHY C++D++G +GL  EA   I  MP+
Sbjct: 419 GLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPM 478

Query: 524 KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583
           +PD ++W +LL AC IHG+ E+G+  A+KL   +P++P  Y+L++NIY+ +G+W E  K 
Sbjct: 479 EPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKI 538

Query: 584 IKRMKEMGVDKET-GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
              + + G+ K+  G S IEI+  VH F++ DK+HPQ   I+G+L E+  L+ + G+VP+
Sbjct: 539 RTLLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPD 598

Query: 643 KRFILH 648
              +L 
Sbjct: 599 TSEVLQ 604



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 85  VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS-WNTMVSGFLRNGEFDMGFGFF 143
           V NA+ +  SL+  Y KC  +  A ++ D      ++S WN M+ GF  +G  +  F  F
Sbjct: 343 VTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIF 402

Query: 144 KRSLELGFYQLDQASFTIILSACDRS 169
            R  + G  + D  +F  +LSAC  S
Sbjct: 403 SRMRKNGI-EPDDITFVGLLSACSHS 427


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 301/565 (53%), Gaps = 12/565 (2%)

Query: 38  KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLS 97
           KL++ ++  ++ +L      G   +G  +H   +K    FD+           +  S + 
Sbjct: 141 KLLVSDFT-LATVLKACGGLGCSRIGKCVHGYAVKI--GFDSD--------LFVSGSTVY 189

Query: 98  FYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA 157
            Y KC  +  A   FD +  +D V+WNTM++G+ +N   +     F + +EL  ++ +  
Sbjct: 190 MYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQ-MELEGFKPNDT 248

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F  +L A      S V +  H  V   G   +V V  AL+  Y K        + FGEM
Sbjct: 249 TFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEM 308

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
             RN++++ A+I+G      YEE L+++ ++    + P+S T++    +CS    + EG 
Sbjct: 309 SKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGA 368

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H    K  L SD+ + +++++ YSKCG  + A + FE     + V    I+ GFAQNG
Sbjct: 369 QVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNG 428

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             E+A+  F KM K   + D    S+V+       ++  G+ +H+ ++KS      +V +
Sbjct: 429 EGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGS 488

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            +I+MYSKCG +ED+ KVFS M  +N VSWNSMI  +A++G   +AL L++EM   G+ P
Sbjct: 489 AVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILP 548

Query: 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517
           T VTF+ +L ACSH GLV +G  F   M   + I P  EH  C+VD++GRAG L EA +F
Sbjct: 549 TAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAF 608

Query: 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577
           +       +  +W +LL AC +H +S++G  AA+     +P   + Y  ++NIY+    W
Sbjct: 609 LLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELW 668

Query: 578 KERAKAIKRMKEMGVDKETGISWIE 602
            E ++    MK+MGV+KE G SWIE
Sbjct: 669 SEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 262/543 (48%), Gaps = 32/543 (5%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N +  S  +S  A+     L  SLH   +K  + F NQ          + + L+S Y K 
Sbjct: 40  NAITYSATISACAQSTRPSLATSLHCLILK--KGFSNQ--------LFVSSGLISMYSKH 89

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE-LGFYQLDQASFTI 161
           D+++ A  LFDDMP RD VSWN+M++G+ + G  +   G F   +     ++L  + FT+
Sbjct: 90  DRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTL 149

Query: 162 --ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV 219
             +L AC     S + K +H      G++ ++ V  + +  Y KCG        F ++  
Sbjct: 150 ATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIEN 209

Query: 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQI 279
           ++++ W  +I+G  QN   EE ++LF +M L    PN  T+   + A + +     GR  
Sbjct: 210 KDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCF 269

Query: 280 HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFE 339
           H  + KL    D+ + +AL+DMYSK   +ED  + F    + + VS   ++ G++  G  
Sbjct: 270 HAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKY 329

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
           EEA++++ ++   G+E D      +     V +++  G Q+H   +K    S+  V N +
Sbjct: 330 EEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSI 389

Query: 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           +N YSKCG  + +++ F  +   NSV W  +I+ FA++G G KAL  + +M+ + ++ TD
Sbjct: 390 VNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMR-KFIDKTD 448

Query: 460 -VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY--ACVVDMVGRAGLLIEARS 516
             +  S++ A S    V +G         V +       Y  + V+DM  + G++ +A+ 
Sbjct: 449 EFSSSSVIKAVSSWAAVEQGRHL---HAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQK 505

Query: 517 FIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-----PAPYILMANIY 571
               MP K +V+ W +++   + +G      +  E L L Q  +     P     +  ++
Sbjct: 506 VFSVMPEK-NVVSWNSMITGYAQNG------FCKEALLLFQEMTSSGILPTAVTFVGILF 558

Query: 572 SCS 574
           +CS
Sbjct: 559 ACS 561



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 136/252 (53%), Gaps = 4/252 (1%)

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           NV+ WT+ I+   +  L ++ L  F++M    I PN++TY +++ AC+          +H
Sbjct: 5   NVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLH 64

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
            ++ K    + L + S L+ MYSK   +++A  +F+   E D VS   ++ G++Q G  E
Sbjct: 65  CLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNE 124

Query: 341 EAMQLFVKMVKA----GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396
           EA  LF  M+ +     + +    ++ VL   G      +GK +H   +K  F S+ FV+
Sbjct: 125 EACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVS 184

Query: 397 NGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456
              + MY KCG L+ +   F ++  ++ V+WN+MI  +A++    +A+EL+ +M+LEG +
Sbjct: 185 GSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFK 244

Query: 457 PTDVTFLSLLHA 468
           P D TF  +L A
Sbjct: 245 PNDTTFCCVLKA 256



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379
           E + V  T  +   A+ G  ++A+  F++M++AGIE +    SA +      T   L   
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGN 439
           +H LI+K  F++  FV++GLI+MYSK   ++++  +F  M  R+ VSWNSMIA +++ G 
Sbjct: 63  LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGL 122

Query: 440 GFKALELYEEMKLEGVEP-----TDVTFLSLLHACSHVGLVNKG 478
             +A  L+  M +   E      +D T  ++L AC  +G    G
Sbjct: 123 NEEACGLFCSM-INSCENWKLLVSDFTLATVLKACGGLGCSRIG 165



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 2/126 (1%)

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M   N V W S I   AR G   +AL  + +M   G+EP  +T+ + + AC+     +  
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
              L  +      S +    + ++ M  +   + EAR   + MP + DV  W +++   S
Sbjct: 61  TS-LHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDV-SWNSMIAGYS 118

Query: 539 IHGDSE 544
             G +E
Sbjct: 119 QRGLNE 124


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 263/461 (57%), Gaps = 34/461 (7%)

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
           NV +W +VI+ L ++    E L+ F  M    + PN  T+  ++ +CS L  L  GRQ H
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 99

Query: 281 GILWKLALQSDLCIESALMDMYSKCGSVEDA--------------W-------------- 312
                   + DL + SAL+DMYSKCG + DA              W              
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 159

Query: 313 ---QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV--SAVLGV 367
              ++F+   E D +S   I+  +AQNG   E+M++F +MVK G EI+ N V  SAVL  
Sbjct: 160 RALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG-EINYNAVTLSAVLLA 218

Query: 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                S  LGK IH  +IK    SN FV   +I+MY KCG +E + K F RM  +N  SW
Sbjct: 219 CAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSW 278

Query: 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
           ++M+A +  HG+  +ALE++ EM + GV+P  +TF+S+L ACSH GL+ +G  + K+M+ 
Sbjct: 279 SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH 338

Query: 488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
              + P  EHY C+VD++GRAG L EA   I+ M ++PD +VW ALLGAC +H + ++G+
Sbjct: 339 EFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE 398

Query: 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
            +A KLF   P +   Y+L++NIY+ +GRW++  +    MK  G+ K  G S ++I+ +V
Sbjct: 399 ISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRV 458

Query: 608 HSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           H F+V D+ HPQ + I+  L +L   + + GYVP+   +LH
Sbjct: 459 HVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLH 499



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 128/249 (51%), Gaps = 18/249 (7%)

Query: 74  FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRN 133
           F+   ++N+       V W S+++ Y++ D    A+++FD M  RD +SWN++++ + +N
Sbjct: 134 FDEISHRNI-------VSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQN 186

Query: 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193
           G        F R ++ G    +  + + +L AC  S    + K IH  V   G E  V V
Sbjct: 187 GMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFV 246

Query: 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253
           G ++I  Y KCG     RK F  MR +NV +W+A+++G   +   +E L++F +M++  +
Sbjct: 247 GTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 306

Query: 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA------LMDMYSKCGS 307
            PN +T++S + ACS    L EG       W  A+  +  +E        ++D+  + G 
Sbjct: 307 KPNYITFVSVLAACSHAGLLEEGWH-----WFKAMSHEFDVEPGVEHYGCMVDLLGRAGY 361

Query: 308 VEDAWQIFE 316
           +++A+ + +
Sbjct: 362 LKEAFDLIK 370



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 195/403 (48%), Gaps = 54/403 (13%)

Query: 107 NAVKLFDDMPMRDTV-SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165
           N   LF+    +  V SWN++++   R+G+       F    +L   + ++++F   + +
Sbjct: 27  NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSL-KPNRSTFPCAIKS 85

Query: 166 CDRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
           C  + L L S +  H    + G+E ++ V +AL+  Y KCG     R +F E+  RN+++
Sbjct: 86  CS-ALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVS 144

Query: 225 WTAVISGLVQNQLYEEGLKLFVKM--------------------------------HLGL 252
           WT++I+G VQN      L++F  M                                  G 
Sbjct: 145 WTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 204

Query: 253 INPNSLTYLSSVMAC--SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310
           IN N++T  + ++AC  SG Q L  G+ IH  + K+ L+S++ + ++++DMY KCG VE 
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRL--GKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 262

Query: 311 AWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370
           A + F+   E +  S + ++ G+  +G  +EA+++F +M  AG++  PN ++ V  V   
Sbjct: 263 ARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVK--PNYITFV-SVLAA 319

Query: 371 DTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVFSRMAPR-NSV 425
            +  GL ++       +  +F   P V +   ++++  + G L+++  +   M  R + V
Sbjct: 320 CSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFV 379

Query: 426 SWNSMIAAFARHGNGFKALELYE--EMKLEGVEPTDVTFLSLL 466
            W +++ A   H N    ++L E    KL  ++P +  +  LL
Sbjct: 380 VWGALLGACRMHKN----VDLGEISARKLFELDPKNCGYYVLL 418



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 38/263 (14%)

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           ++ ++ +  S   ++   A++G   EA++ F  M K  + + PN  +    +      L 
Sbjct: 34  KYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRK--LSLKPNRSTFPCAIKSCSALLD 91

Query: 376 L--GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED---------------------- 411
           L  G+Q H   +   F  + FV++ L++MYSKCG+L D                      
Sbjct: 92  LHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITG 151

Query: 412 ---------SIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVT 461
                    +++VF  MA R+ +SWNS+IA +A++G   +++E++  M  +G +    VT
Sbjct: 152 YVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVT 211

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
             ++L AC+H G    G      + ++  +         ++DM  + G +  AR   +RM
Sbjct: 212 LSAVLLACAHSGSQRLGKCIHDQVIKM-GLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 522 PVKPDVLVWQALLGACSIHGDSE 544
             K +V  W A++    +HG ++
Sbjct: 271 REK-NVKSWSAMVAGYGMHGHAK 292


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/570 (33%), Positives = 304/570 (53%), Gaps = 39/570 (6%)

Query: 108 AVKLFDDMPMR-DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           A+ +F  +P   +++ +N  +    R+ E      F++R   +G  +LDQ SF  IL A 
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVG-GRLDQFSFLPILKAV 121

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            +         +H + +      +  V    +  Y  CG  +  R VF EM  R+V+TW 
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I    +  L +E  KLF +M    + P+ +   + V AC     +   R I+  L + 
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241

Query: 287 ALQSDLCIESAL---------MDM----------------------YSKCGSVEDAWQIF 315
            ++ D  + +AL         MDM                      YSKCG ++DA  IF
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +  E+ D V  T ++  + ++ + +EA+++F +M  +GI+  P++VS +  V     +LG
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK--PDVVS-MFSVISACANLG 358

Query: 376 L---GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
           +    K +HS I  +   S   +NN LINMY+KCG L+ +  VF +M  RN VSW+SMI 
Sbjct: 359 ILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMIN 418

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           A + HG    AL L+  MK E VEP +VTF+ +L+ CSH GLV +G +   SMT+ + I+
Sbjct: 419 ALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNIT 478

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P+ EHY C+VD+ GRA LL EA   IE MPV  +V++W +L+ AC IHG+ E+GK+AA++
Sbjct: 479 PKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKR 538

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           +   +PD     +LM+NIY+   RW++     + M+E  V KE G+S I+   + H F++
Sbjct: 539 ILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLI 598

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
            DK H Q++ I+  L E++  +   GYVP+
Sbjct: 599 GDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 116/227 (51%), Gaps = 2/227 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           +  +++S Y KC ++ +A  +FD    +D V W TM+S ++ +         F+     G
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
             + D  S   ++SAC    +   +K +H  +++ G E E+++ NALI  Y KCG   + 
Sbjct: 340 I-KPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDAT 398

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
           R VF +M  RNV++W+++I+ L  +    + L LF +M    + PN +T++  +  CS  
Sbjct: 399 RDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHS 458

Query: 271 QALCEGRQIHGILW-KLALQSDLCIESALMDMYSKCGSVEDAWQIFE 316
             + EG++I   +  +  +   L     ++D++ +   + +A ++ E
Sbjct: 459 GLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIE 505


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/509 (35%), Positives = 282/509 (55%), Gaps = 27/509 (5%)

Query: 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC------------ 204
           AS    L +C    LS +   +H L    G   +    NAL+  Y K             
Sbjct: 51  ASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAI 110

Query: 205 ----GSSS---SGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257
               GSS+   S RKVF EM  R+V++W  ++ G  +   + E L    KM      P+S
Sbjct: 111 VDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDS 170

Query: 258 LTYLSSVMA----CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313
            T LS+V+     C+ ++    G ++HG  ++    SD+ + S+L+DMY+ C   + + +
Sbjct: 171 FT-LSTVLPIFAECADVK---RGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVK 226

Query: 314 IFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373
           +F+     D +    +L G AQNG  EEA+ +F +M++AG+   P   S+++ V G   S
Sbjct: 227 VFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLAS 286

Query: 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA 433
           L  GKQ+H+ +I   F  N F+++ LI+MY KCG++  +  +F +M+  + VSW +MI  
Sbjct: 287 LRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMG 346

Query: 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP 493
           +A HG   +AL L+E M+L   +P  +TFL++L ACSH GLV+KG ++ KSM+  + I P
Sbjct: 347 YALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVP 406

Query: 494 RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553
             EH+A + D +GRAG L EA +FI +M +KP   VW  LL AC +H ++ + +  A+K+
Sbjct: 407 TLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKI 466

Query: 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVD 613
              +P S   +++++N+YS SGRW E A   + M++ G+ K+   SWIE++ ++H FV  
Sbjct: 467 MELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAH 526

Query: 614 DKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           D+ HP  D I   L      M  EG+VPN
Sbjct: 527 DRSHPWYDRIIDALNAFSEQMAREGHVPN 555



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 189/389 (48%), Gaps = 22/389 (5%)

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI-----ILS 164
           K+FD+M  RD VSWNT+V G    G      GF ++    GF      SFT+     I +
Sbjct: 125 KVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFR---PDSFTLSTVLPIFA 181

Query: 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT 224
            C   +  L    +H   +  G++ +V VG++LI  Y  C  +    KVF  + VR+ I 
Sbjct: 182 ECADVKRGL---EVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHIL 238

Query: 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILW 284
           W ++++G  QN   EE L +F +M    + P  +T+ S +  C  L +L  G+Q+H  + 
Sbjct: 239 WNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVI 298

Query: 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQ 344
               + ++ I S+L+DMY KCG +  A  IF+     D VS T +++G+A +G   EA+ 
Sbjct: 299 CGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALV 358

Query: 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI--IKSDFTSNPFVNN--GLI 400
           LF +M     +  PN ++  L V    +  GL  +       + + +   P + +   L 
Sbjct: 359 LFERMELGNAK--PNHIT-FLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALA 415

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVS-WNSMIAAFARHGNGFKALELYEE-MKLEGVEPT 458
           +   + G+L+++    S+M  + + S W++++ A   H N   A E+ ++ M+LE     
Sbjct: 416 DTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIG 475

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
               LS +++ S  G  N+     +SM +
Sbjct: 476 SHVVLSNMYSAS--GRWNEAAHLRESMRK 502



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 1/178 (0%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           + +SL+  Y  C +   +VK+FD++P+RD + WN++++G  +NG  +   G F+R L+ G
Sbjct: 207 VGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG 266

Query: 151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
              +   +F+ ++  C         K +H  V   G+E+ V + ++LI  Y KCG  S  
Sbjct: 267 VRPV-PVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIA 325

Query: 211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268
             +F +M   +V++WTA+I G   +    E L LF +M LG   PN +T+L+ + ACS
Sbjct: 326 HCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 383


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/542 (33%), Positives = 301/542 (55%), Gaps = 7/542 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLLS Y+  D M  A +LFD+M  +D ++W+ M+ G+L+  E  +G   F++ + +   
Sbjct: 188 NSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGI 246

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D      +L AC  S      +++H LV   G++ ++ V N+LI  Y KC  + S  K
Sbjct: 247 EPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFK 306

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  RN ++W +++SG V N+ Y E   L   M    +  + +T ++ +  C     
Sbjct: 307 VFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVH 366

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
               + IH ++ +   +++  + SAL+D Y+KC  +E AW++F      D VS + ++ G
Sbjct: 367 PFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISG 426

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFT 390
           FA  G  +EA+ ++ +M +  ++  PN+++ +  L    V   L   K  H + I+  F 
Sbjct: 427 FAHCGKPDEAIAVYQEMDRDLVK--PNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA 484

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S   V   +++MYSKCG++  S + F ++A +N V+W++MIAA+  +G   +AL L+ EM
Sbjct: 485 SEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEM 544

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           K  G++P  VT LS+L ACSH GLV +G+   KSM +   + P  EHY+C+VDM+GRAG 
Sbjct: 545 KRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGK 604

Query: 511 LIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           L  A   I+ MP  +K    +W +LL AC  +G +E+GK A  ++   +P + A Y++ +
Sbjct: 605 LDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVAS 664

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+  G W + A+     KE GV    G S + I+ +   FV  D  HP++D I  +  
Sbjct: 665 SMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIFSMAQ 724

Query: 629 EL 630
           +L
Sbjct: 725 QL 726



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 265/521 (50%), Gaps = 24/521 (4%)

Query: 59  HFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           H H G SLHA  IK  F+ F           T I NS++ FY++C     AV +F+ M  
Sbjct: 63  HRH-GKSLHACLIKQGFDSF-----------TSIGNSIMGFYIRCGDFDIAVDVFNSMRR 110

Query: 118 -RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            RD+VSWN ++ G L NG    G  +F  +   GF + + ++  +++ AC          
Sbjct: 111 SRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGF-EPNISTMVLVIQACRILGTKHDGL 169

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           ++H  +   G+    +V N+L++ Y         R++F EM  ++VI W+ +I G +Q +
Sbjct: 170 ILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWE 228

Query: 237 LYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             + GL++F KM L   I P+ +  +S + AC+  + +C GR +HG++       DL +E
Sbjct: 229 EPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVE 288

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+DMYSKC     A+++F    + + VS   +L GF  N    EA  L   M K  +E
Sbjct: 289 NSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVE 348

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  +L +          K IH ++I+    +N  V + LI+ Y+KC  +E + +V
Sbjct: 349 TDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEV 408

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F+RM  R+ VSW++MI+ FA  G   +A+ +Y+EM  + V+P  +T ++LL ACS    +
Sbjct: 409 FARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAEL 468

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +  ++   +      +        VVDM  + G ++ +R   +++ +K +++ W A++ 
Sbjct: 469 KRS-KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIA 526

Query: 536 ACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           A  ++G     +  +A  K    +P+   P   ++ + +CS
Sbjct: 527 AYGMNGLAHEALALFAEMKRHGLKPN---PVTTLSVLAACS 564



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 45/456 (9%)

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS----KMIHCLVYLCGYE 188
           NG++      +    + G   +D + F  IL A      S +S    K +H  +   G++
Sbjct: 25  NGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKA-----WSFLSHRHGKSLHACLIKQGFD 79

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVK 247
              ++GN+++  Y +CG       VF  MR  R+ ++W  +I G + N     GL  F  
Sbjct: 80  SFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTN 139

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
             +    PN  T +  + AC  L    +G  +HG L K    +   ++++L+ MY     
Sbjct: 140 ARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-AD 198

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLG 366
           +E A ++F+   E D ++ +V++ G+ Q    +  +Q+F KMV   GIE D  ++ +VL 
Sbjct: 199 MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLK 258

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                  +  G+ +H L+I   F  + FV N LI+MYSKC D   + KVF+ ++ RN+VS
Sbjct: 259 ACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVS 318

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLV 475
           WNSM++ F  + N  +A  L   M+ E VE  +VT +++L  C            H  ++
Sbjct: 319 WNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMI 378

Query: 476 NKGME--------FLKSMTEVHRISPRAEHYACV--VDMV------------GRAGLLIE 513
            +G E         + +  + + I    E +A +   D+V            G+    I 
Sbjct: 379 RRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIA 438

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
               ++R  VKP+V+    LL ACS+  + +  K+A
Sbjct: 439 VYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA 474



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 23/308 (7%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           LN N+    SL+S    + ++     T ++ L N + I +          FH   S+H  
Sbjct: 328 LNENYSEAQSLISSMRKERVE-----TDEVTLVNILQICKYFVHP-----FHC-KSIHCV 376

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            I+     +           ++ ++L+  Y KC  +  A ++F  M  RD VSW+TM+SG
Sbjct: 377 MIRRGSEANE----------LVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISG 426

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           F   G+ D     ++  ++    + +  +   +L AC  +     SK  H +    G+  
Sbjct: 427 FAHCGKPDEAIAVYQE-MDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFAS 485

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           EVTVG A++  Y KCG   + R+ F ++ ++N++TW+A+I+    N L  E L LF +M 
Sbjct: 486 EVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMK 545

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSV 308
              + PN +T LS + ACS    + EG  +   ++ +L L+      S ++DM  + G +
Sbjct: 546 RHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKL 605

Query: 309 EDAWQIFE 316
           + A ++ +
Sbjct: 606 DTAIEVIK 613



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 16/248 (6%)

Query: 334 AQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + NG  +E +  + ++ KAGI+ +D ++   +L  +    S   GK +H+ +IK  F S 
Sbjct: 23  SANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSF-LSHRHGKSLHACLIKQGFDSF 81

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             + N ++  Y +CGD + ++ VF+ M   R+SVSWN +I     +G     L  +   +
Sbjct: 82  TSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNAR 141

Query: 452 LEGVEPTDVTFLSLLHAC-----SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + G EP   T + ++ AC      H GL+  G         +  +           DM  
Sbjct: 142 VAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMEC 201

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
                  AR   + M  K DV+ W  ++G      + ++G     K+ L     P   ++
Sbjct: 202 -------ARELFDEMHEK-DVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVM 253

Query: 567 MANIYSCS 574
           ++ + +C+
Sbjct: 254 VSVLKACA 261


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/458 (36%), Positives = 278/458 (60%), Gaps = 8/458 (1%)

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           ALIT Y   G     R++F E+ V++V++W A+ISG VQ+  +EE +  F +M    + P
Sbjct: 202 ALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLP 261

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           N  T +  + AC   ++   G+ I   +      S+L + +AL+DMY KCG  + A ++F
Sbjct: 262 NKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF 321

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
           +  EE D +S   ++ G++     EEA+ LF  M+++ ++  PN V+  LG+      LG
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK--PNDVT-FLGILHACACLG 378

Query: 376 ---LGKQIHSLIIKS-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI 431
              LGK +H+ I K+   +SN  +   LI+MY+KCG +E + +VF  M  RN  SWN+M+
Sbjct: 379 ALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAML 438

Query: 432 AAFARHGNGFKALELYEEMKLEGV-EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
           + FA HG+  +AL L+ EM  +G+  P D+TF+ +L AC+  GLV+ G ++ +SM + + 
Sbjct: 439 SGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYG 498

Query: 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAA 550
           ISP+ +HY C++D++ RA    EA   ++ M ++PD  +W +LL AC  HG  E G+Y A
Sbjct: 499 ISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVA 558

Query: 551 EKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSF 610
           E+LF  +P++   ++L++NIY+ +GRW + A+   R+ + G+ K  G + IEI+  VH F
Sbjct: 559 ERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEF 618

Query: 611 VVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           +V DK HP+ + I+ +L E+ +L+ + G+VPN   +L+
Sbjct: 619 LVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLY 656



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 203/397 (51%), Gaps = 27/397 (6%)

Query: 60  FHLGPSLHASFIKTFEP----------FDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAV 109
            H  P +H S I  +            FD  ++ +     V + +L++ Y+    + +A 
Sbjct: 162 LHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRD----AVSFTALITGYVSQGCLDDAR 217

Query: 110 KLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRS 169
           +LFD++P++D VSWN M+SG++++G F+     F    E      ++++  ++LSAC  +
Sbjct: 218 RLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLP-NKSTMVVVLSACGHT 276

Query: 170 ELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229
               + K I   V   G+   + + NALI  Y KCG +   R++F  +  ++VI+W  +I
Sbjct: 277 RSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMI 336

Query: 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK-LAL 288
            G     LYEE L LF  M    + PN +T+L  + AC+ L AL  G+ +H  + K L  
Sbjct: 337 GGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRN 396

Query: 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348
            S+  + ++L+DMY+KCG +E A ++F      +  S   +L GFA +G  E A+ LF +
Sbjct: 397 SSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSE 456

Query: 349 MVKAGIEIDPNMVSAVLGVFGVDTSLG---LGKQIHSLIIKSDFTSNPFVNN--GLINMY 403
           MV  G+   P+ ++ V GV    T  G   LG Q    +I+ D+  +P + +   +I++ 
Sbjct: 457 MVNKGL-FRPDDITFV-GVLSACTQAGLVDLGHQYFRSMIQ-DYGISPKLQHYGCMIDLL 513

Query: 404 SKCGDLEDSIKVFS--RMAPRNSVSWNSMIAAFARHG 438
           ++    E++  +     M P  ++ W S+++A   HG
Sbjct: 514 ARAEKFEEAEILMKNMEMEPDGAI-WGSLLSACKAHG 549



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 198/430 (46%), Gaps = 46/430 (10%)

Query: 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKV 213
           L+Q  +  +L  C         K IH L+   G    V V + LI  +F C  S SG   
Sbjct: 26  LEQHPYLNLLEKCKNIN---TFKQIHSLIIKTGLNNTVFVQSKLI--HF-CAVSPSGDLS 79

Query: 214 FG--------EMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM 265
           +         +    NV  W ++I G   +      L LF +M    + PNS T+     
Sbjct: 80  YALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFK 139

Query: 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325
           +C+  +A  EG+Q+H    KLAL  +  + ++++ MY+  G ++ A  +F+ +   D VS
Sbjct: 140 SCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVS 199

Query: 326 MTVILVGFA-------------------------------QNGFEEEAMQLFVKMVKAGI 354
            T ++ G+                                Q+G  EEA+  F +M +A +
Sbjct: 200 FTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANV 259

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
             + + +  VL   G   S  LGK I S +  + F SN  + N LI+MY KCG+ + + +
Sbjct: 260 LPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARE 319

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  +  ++ +SWN+MI  ++      +AL L+E M    V+P DVTFL +LHAC+ +G 
Sbjct: 320 LFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGA 379

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++ G      + +  R S  A  +  ++DM  + G  IEA   + R     ++  W A+L
Sbjct: 380 LDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCG-CIEAAERVFRSMHSRNLASWNAML 438

Query: 535 GACSIHGDSE 544
              ++HG +E
Sbjct: 439 SGFAMHGHAE 448



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 14/222 (6%)

Query: 378 KQIHSLIIKSDFTSNPFVNNGLINM--YSKCGDLEDSIKVF---SRMAPRNSVSWNSMIA 432
           KQIHSLIIK+   +  FV + LI+    S  GDL  ++ +F    +    N   WNS+I 
Sbjct: 45  KQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIR 104

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF-LKSMTEVHRI 491
            ++   +   +L L+  M   GV+P   TF  L  +C+     ++G +    ++      
Sbjct: 105 GYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHF 164

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551
           +P    +  V+ M    G +  AR   ++  ++ D + + AL+      G  +     A 
Sbjct: 165 NPHV--HTSVIHMYASVGEMDFARLVFDKSSLR-DAVSFTALITGYVSQGCLD----DAR 217

Query: 552 KLFLAQP-DSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           +LF   P      +  M + Y  SGR++E       M+E  V
Sbjct: 218 RLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANV 259


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 180/542 (33%), Positives = 301/542 (55%), Gaps = 7/542 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           NSLLS Y+  D M  A +LFD+M  +D ++W+ M+ G+L+  E  +G   F++ + +   
Sbjct: 188 NSLLSMYVDAD-MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGI 246

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
           + D      +L AC  S      +++H LV   G++ ++ V N+LI  Y KC  + S  K
Sbjct: 247 EPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFK 306

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF E+  RN ++W +++SG V N+ Y E   L   M    +  + +T ++ +  C     
Sbjct: 307 VFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVH 366

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
               + IH ++ +   +++  + SAL+D Y+KC  +E AW++F      D VS + ++ G
Sbjct: 367 PFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISG 426

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFT 390
           FA  G  +EA+ ++ +M +  ++  PN+++ +  L    V   L   K  H + I+  F 
Sbjct: 427 FAHCGKPDEAIAVYQEMDRDLVK--PNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA 484

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
           S   V   +++MYSKCG++  S + F ++A +N V+W++MIAA+  +G   +AL L+ EM
Sbjct: 485 SEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEM 544

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
           K  G++P  VT LS+L ACSH GLV +G+   KSM +   + P  EHY+C+VDM+GRAG 
Sbjct: 545 KRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGK 604

Query: 511 LIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           L  A   I+ MP  +K    +W +LL AC  +G +E+GK A  ++   +P + A Y++ +
Sbjct: 605 LDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVAS 664

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           ++Y+  G W + A+     KE GV    G S + I+ +   FV  D  HP++D I  +  
Sbjct: 665 SMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDGSHPRSDEIFSMAQ 724

Query: 629 EL 630
           +L
Sbjct: 725 QL 726



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 150/521 (28%), Positives = 265/521 (50%), Gaps = 24/521 (4%)

Query: 59  HFHLGPSLHASFIKT-FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117
           H H G SLHA  IK  F+ F           T I NS++ FY++C     AV +F+ M  
Sbjct: 63  HRH-GKSLHACLIKQGFDSF-----------TSIGNSIMGFYIRCGDFDIAVDVFNSMRR 110

Query: 118 -RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSK 176
            RD+VSWN ++ G L NG    G  +F  +   GF + + ++  +++ AC          
Sbjct: 111 SRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGF-EPNISTMVLVIQACRILGTKHDGL 169

Query: 177 MIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ 236
           ++H  +   G+    +V N+L++ Y         R++F EM  ++VI W+ +I G +Q +
Sbjct: 170 ILHGYLIKSGFWAISSVQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWE 228

Query: 237 LYEEGLKLFVKMHL-GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             + GL++F KM L   I P+ +  +S + AC+  + +C GR +HG++       DL +E
Sbjct: 229 EPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVE 288

Query: 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
           ++L+DMYSKC     A+++F    + + VS   +L GF  N    EA  L   M K  +E
Sbjct: 289 NSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVE 348

Query: 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
            D   +  +L +          K IH ++I+    +N  V + LI+ Y+KC  +E + +V
Sbjct: 349 TDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEV 408

Query: 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
           F+RM  R+ VSW++MI+ FA  G   +A+ +Y+EM  + V+P  +T ++LL ACS    +
Sbjct: 409 FARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAEL 468

Query: 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
            +  ++   +      +        VVDM  + G ++ +R   +++ +K +++ W A++ 
Sbjct: 469 KRS-KWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALK-NIVTWSAMIA 526

Query: 536 ACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574
           A  ++G     +  +A  K    +P+   P   ++ + +CS
Sbjct: 527 AYGMNGLAHEALALFAEMKRHGLKPN---PVTTLSVLAACS 564



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 212/456 (46%), Gaps = 45/456 (9%)

Query: 133 NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS----KMIHCLVYLCGYE 188
           NG++      +    + G   +D + F  IL A      S +S    K +H  +   G++
Sbjct: 25  NGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKA-----WSFLSHRHGKSLHACLIKQGFD 79

Query: 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVK 247
              ++GN+++  Y +CG       VF  MR  R+ ++W  +I G + N     GL  F  
Sbjct: 80  SFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTN 139

Query: 248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
             +    PN  T +  + AC  L    +G  +HG L K    +   ++++L+ MY     
Sbjct: 140 ARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD-AD 198

Query: 308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-GIEIDPNMVSAVLG 366
           +E A ++F+   E D ++ +V++ G+ Q    +  +Q+F KMV   GIE D  ++ +VL 
Sbjct: 199 MECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLK 258

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
                  +  G+ +H L+I   F  + FV N LI+MYSKC D   + KVF+ ++ RN+VS
Sbjct: 259 ACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVS 318

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS-----------HVGLV 475
           WNSM++ F  + N  +A  L   M+ E VE  +VT +++L  C            H  ++
Sbjct: 319 WNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMI 378

Query: 476 NKGME--------FLKSMTEVHRISPRAEHYACV--VDMV------------GRAGLLIE 513
            +G E         + +  + + I    E +A +   D+V            G+    I 
Sbjct: 379 RRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIA 438

Query: 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549
               ++R  VKP+V+    LL ACS+  + +  K+A
Sbjct: 439 VYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA 474



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 147/308 (47%), Gaps = 23/308 (7%)

Query: 10  LNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHAS 69
           LN N+    SL+S    + ++     T ++ L N + I +          FH   S+H  
Sbjct: 328 LNENYSEAQSLISSMRKERVE-----TDEVTLVNILQICKYFVHP-----FHC-KSIHCV 376

Query: 70  FIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSG 129
            I+     +           ++ ++L+  Y KC  +  A ++F  M  RD VSW+TM+SG
Sbjct: 377 MIRRGSEANE----------LVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISG 426

Query: 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189
           F   G+ D     ++  ++    + +  +   +L AC  +     SK  H +    G+  
Sbjct: 427 FAHCGKPDEAIAVYQE-MDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFAS 485

Query: 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMH 249
           EVTVG A++  Y KCG   + R+ F ++ ++N++TW+A+I+    N L  E L LF +M 
Sbjct: 486 EVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMK 545

Query: 250 LGLINPNSLTYLSSVMACSGLQALCEGRQI-HGILWKLALQSDLCIESALMDMYSKCGSV 308
              + PN +T LS + ACS    + EG  +   ++ +L L+      S ++DM  + G +
Sbjct: 546 RHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKL 605

Query: 309 EDAWQIFE 316
           + A ++ +
Sbjct: 606 DTAIEVIK 613



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 16/248 (6%)

Query: 334 AQNGFEEEAMQLFVKMVKAGIE-IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392
           + NG  +E +  + ++ KAGI+ +D ++   +L  +    S   GK +H+ +IK  F S 
Sbjct: 23  SANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSF-LSHRHGKSLHACLIKQGFDSF 81

Query: 393 PFVNNGLINMYSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMK 451
             + N ++  Y +CGD + ++ VF+ M   R+SVSWN +I     +G     L  +   +
Sbjct: 82  TSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNAR 141

Query: 452 LEGVEPTDVTFLSLLHAC-----SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           + G EP   T + ++ AC      H GL+  G         +  +           DM  
Sbjct: 142 VAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMEC 201

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
                  AR   + M  K DV+ W  ++G      + ++G     K+ L     P   ++
Sbjct: 202 -------ARELFDEMHEK-DVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVM 253

Query: 567 MANIYSCS 574
           ++ + +C+
Sbjct: 254 VSVLKACA 261


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 301/590 (51%), Gaps = 11/590 (1%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
            LG + HA  ++   P        +P    +   L++ Y K D    A       P    
Sbjct: 34  RLGRAAHARALRLLSP-------ALP--PFLCAHLVNLYSKLDLPGAAAASLAADPSPTV 84

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           VS+   +SG  ++         F   L LG    D    +   +A      S     +H 
Sbjct: 85  VSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHA 144

Query: 181 LVYLCGY-EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
           L    GY  ++  V  A +  YFK G  +  R++F EM  RNV+ W AV++  V +    
Sbjct: 145 LALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPL 204

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E ++ +  +      PN ++  +   AC+G+  L  G Q +G + K     D+ + ++++
Sbjct: 205 ETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVV 264

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           D Y KC  V  A  +F+     + VS   ++V +AQNG EEEA  +++   +AG E    
Sbjct: 265 DFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDF 324

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           MVS+VL        L LG+ +H++ ++S   SN FV + L++MY KCG +ED+ +VF  M
Sbjct: 325 MVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEM 384

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNKG 478
             RN V+WN+MI  +A  G+   AL ++++M + +   P  +T +++L ACS  GL  +G
Sbjct: 385 PQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEG 444

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E  ++M     I PR EHYACVVD++ RAG+   A   I+ MP++P + VW ALLG C 
Sbjct: 445 YELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCK 504

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
           +HG +E+G+ AAEKLF   P     ++L++N+ + +GRW E     K MK +G+ K+ G 
Sbjct: 505 MHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGR 564

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           SWI  +  VH F   D  H     I  +LA+L   M   GY+P+ ++ L+
Sbjct: 565 SWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALY 614



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 84/187 (44%), Gaps = 12/187 (6%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           +S +L+  A      LG +LHA  +++     + N++       + ++L+  Y KC  + 
Sbjct: 326 VSSVLTTCAGLLGLDLGRALHAVAVRSC---IDSNIF-------VASALVDMYGKCGGIE 375

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           +A ++F +MP R+ V+WN M+ G+   G+       F + +       +  +   +L+AC
Sbjct: 376 DAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTAC 435

Query: 167 DRSELSLVS-KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVIT- 224
            R  L+    ++   + +  G E  +     ++    + G      K+   M +R  I+ 
Sbjct: 436 SRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISV 495

Query: 225 WTAVISG 231
           W A++ G
Sbjct: 496 WGALLGG 502


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/455 (37%), Positives = 254/455 (55%), Gaps = 2/455 (0%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N L+  Y K    +S + +      R+V+TWTA+I+G VQN  +   L  F  M    I 
Sbjct: 46  NHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQ 105

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN  T+  +  A   L++   G+Q+H +  K    SD+ +  +  DMYSK G  E+A ++
Sbjct: 106 PNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKM 165

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           F+   E +  +    L      G  ++A+  F++  K GIE    MVS+VL      + L
Sbjct: 166 FDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVL 225

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            +GK +H+L +K+    N FV + L++MY KCG +ED+ + F  M  RN V+WN+MI  +
Sbjct: 226 EVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGY 285

Query: 435 ARHGNGFKALELYEEMKL--EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
           A  G    A+ L++EM      V P  VTF+ +L ACS  G VN GME  +SM   + I 
Sbjct: 286 AHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIE 345

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           P AEHYACVVD++GRAG++ +A  FI++MP++P V VW ALLGA  + G SE+GK AA+ 
Sbjct: 346 PGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADN 405

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           LF   P     ++L++N+++ +GRW+E     K MK++G+ K  G SWI     VH F  
Sbjct: 406 LFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQA 465

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            D  H +   I  +LA+L   M   GY+P+  F L
Sbjct: 466 KDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFAL 500



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 179/378 (47%), Gaps = 16/378 (4%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
            LG + HA  IKT    DN      P  + I+N L++ Y K D+  +A  L    P R  
Sbjct: 23  RLGRAAHAQIIKTL---DN------PLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSV 73

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           V+W  +++G ++NG F      F  ++     Q +  +F     A       LV K +H 
Sbjct: 74  VTWTALIAGSVQNGRFTSALFHFS-NMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHA 132

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           L    G   +V VG +    Y K G +   RK+F EM  RN+ TW A +S  V    Y++
Sbjct: 133 LAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDD 192

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            L  F++     I P      S + AC+GL  L  G+ +H +  K  +  ++ + SAL+D
Sbjct: 193 ALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVD 252

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360
           MY KCGS+EDA + F+   E + V+   ++ G+A  G  + A+ LF +M      + PN 
Sbjct: 253 MYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNY 312

Query: 361 VS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--GLINMYSKCGDLEDSIKVF 416
           V+   VL       S+ +G +I    ++  +   P   +   ++++  + G +E + +  
Sbjct: 313 VTFVCVLSACSRAGSVNVGMEIFE-SMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFI 371

Query: 417 SRMAPRNSVS-WNSMIAA 433
            +M  R +VS W +++ A
Sbjct: 372 KKMPIRPTVSVWGALLGA 389



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 25/178 (14%)

Query: 376 LGKQIHSLIIKSDFTSNP---FVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMI 431
           LG+  H+ IIK+    NP   F+ N L+NMYSK  D  +S ++   + P R+ V+W ++I
Sbjct: 24  LGRAAHAQIIKT--LDNPLPSFIYNHLVNMYSKL-DRPNSAQLLLSLTPNRSVVTWTALI 80

Query: 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV--GLVNKGMEFLKSMTEVH 489
           A   ++G    AL  +  M+ + ++P D TF     A   +   LV K         +VH
Sbjct: 81  AGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK---------QVH 131

Query: 490 RISPRAEHYACV------VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG 541
            ++ +A   + V       DM  +AGL  EAR   + MP + ++  W A L    + G
Sbjct: 132 ALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPER-NIATWNAYLSNSVLEG 188


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/525 (33%), Positives = 290/525 (55%), Gaps = 2/525 (0%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V+ N L+  Y KC    +A ++F  +   D V  + M+S F R+      F  F +  ++
Sbjct: 298 VLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDM 357

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G  + +Q +F  +     R+    + + IH  +   G+     V +A++  Y K G+   
Sbjct: 358 GV-KPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQD 416

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
               F  M+  ++ +W  ++SG       E GL++F ++    +  N  TY+  +  C+ 
Sbjct: 417 AILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTS 476

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           L  L  G Q+H  + K   Q D  +   L+DMY + G   +A  +F+  +E D  S TV+
Sbjct: 477 LMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVV 536

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           +  +A+    E+A++ F  M++     +   ++  L V      LG G Q+HS  IKS +
Sbjct: 537 MSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGW 596

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
            S+  V++ L++MY KCG+L D+  +F      + V WN++I  +A+HG+G+KALE ++E
Sbjct: 597 NSS-VVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQE 655

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
           M  EG  P ++TF+ +L ACSH GL+++G  + K ++ V+ I+P  EHYAC+VD++ +AG
Sbjct: 656 MIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAG 715

Query: 510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
            L EA S I  MP+ PD  +W+ +LGAC +HG+ E+ + AAEKLF +QPD  +  IL++N
Sbjct: 716 KLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSN 775

Query: 570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           IY+   RW + AK    + + GV KE G SWIEI  ++H F+  D
Sbjct: 776 IYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLSQD 820



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 245/528 (46%), Gaps = 46/528 (8%)

Query: 63  GPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122
           G +LHA  +++    D            + +SLL+ Y KC ++ +A  +FD MP RD V+
Sbjct: 79  GKALHARLLRSGPRPD----------AFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVA 128

Query: 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD-RSELSLVSKMIHCL 181
           W  MVS     G+       F    E G    +  +    L AC   S+L    ++    
Sbjct: 129 WTAMVSAITAAGDAGAALRLFAEMSEEGVVP-NGFALAAALKACTVGSDLGFTPQVHAQA 187

Query: 182 VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241
           V L G  +   V ++L+ +Y  CG      +   +  VR+ ++W A+++   ++  Y + 
Sbjct: 188 VKLEGLFDPY-VSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKV 246

Query: 242 LKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDM 301
           + +F K+       +  T  + +  C  L     G+ +HG++ K  L++D  + + L++M
Sbjct: 247 MLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEM 306

Query: 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV 361
           YSKC S EDA+++F   +E D V  ++++  F ++    EA  +F++M   G++  PN  
Sbjct: 307 YSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVK--PNQY 364

Query: 362 SAV-LGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           + V L +    T  + L + IH+ I+KS F+    V + ++ MY K G ++D+I  F  M
Sbjct: 365 TFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLM 424

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS--------- 470
              +  SWN++++ F    N    L +++E+  EGV     T++ +L  C+         
Sbjct: 425 QGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGC 484

Query: 471 --HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
             H  ++  G +    ++++            ++DM  +AG    AR   +R+  + DV 
Sbjct: 485 QVHACVLKSGFQGDYDVSKM------------LLDMYVQAGCFTNARLVFDRLKER-DVF 531

Query: 529 VWQALLGACSIHGDSEMGKYAAE--KLFLAQPDSPAPYILMANIYSCS 574
            W  ++   S +  ++ G+ A E  +  L +   P    L  ++  CS
Sbjct: 532 SWTVVM---STYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCS 576



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 225/487 (46%), Gaps = 32/487 (6%)

Query: 64  PSLHASFIKT---FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           P +HA  +K    F+P+             + +SL+  Y+ C ++  A +   D P+R  
Sbjct: 181 PQVHAQAVKLEGLFDPY-------------VSSSLVEAYVSCGEVDVAERALLDSPVRSD 227

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           VSWN +++ + R+G++      F + +E G  ++ + +   +L  C    L+   + +H 
Sbjct: 228 VSWNALLNEYARDGDYAKVMLVFDKLVESG-DEISKYTLPTVLKCCMELGLAKSGQAVHG 286

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           LV   G E +  + N LI  Y KC S+    +VF  +   +V+  + +IS   ++ +  E
Sbjct: 287 LVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPE 346

Query: 241 GLKLFVKMHLGLINPNSLTY--LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
              +F++M    + PN  T+  L+ V + +G   LC  R IH  + K        +  A+
Sbjct: 347 AFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLC--RSIHAHIVKSGFSRTKGVCDAI 404

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           + MY K G+V+DA   F+  +  D  S   +L GF      E  +++F +++  G+  + 
Sbjct: 405 VGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANK 464

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
                +L        L  G Q+H+ ++KS F  +  V+  L++MY + G   ++  VF R
Sbjct: 465 YTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDR 524

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           +  R+  SW  +++ +A+   G KA+E +  M  E   P D T  + L  CS +  +  G
Sbjct: 525 LKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSG 584

Query: 479 MEF----LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           ++     +KS      +S      + +VDM  + G L +A    +      D++ W  ++
Sbjct: 585 LQLHSYTIKSGWNSSVVS------SALVDMYVKCGNLADAEMLFDESDTH-DLVEWNTII 637

Query: 535 GACSIHG 541
              + HG
Sbjct: 638 CGYAQHG 644



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 156/322 (48%), Gaps = 6/322 (1%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           S+   L  C  S      K +H  +   G   +  + ++L+  Y KCG  +  R VF  M
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
             R+V+ WTA++S +         L+LF +M    + PN     +++ AC+    L    
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337
           Q+H    KL    D  + S+L++ Y  CG V+ A +    +     VS   +L  +A++G
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGL---GKQIHSLIIKSDFTSNPF 394
              + M +F K+V++G EI    +  VL        LGL   G+ +H L+IK    ++  
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCC---MELGLAKSGQAVHGLVIKRGLETDRV 298

Query: 395 VNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454
           +NN LI MYSKC   ED+ +VF+R+   + V  + MI+ F RH    +A +++ +M   G
Sbjct: 299 LNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMG 358

Query: 455 VEPTDVTFLSLLHACSHVGLVN 476
           V+P   TF+ L    S  G VN
Sbjct: 359 VKPNQYTFVGLAIVASRTGDVN 380



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 136/274 (49%), Gaps = 10/274 (3%)

Query: 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
           +Y +++  C+  +AL  G+ +H  L +   + D  +  +L++MY KCG + DA  +F+  
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378
              D V+ T ++      G    A++LF +M + G+  +   ++A L    V + LG   
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHG 438
           Q+H+  +K +   +P+V++ L+  Y  CG+++ + +       R+ VSWN+++  +AR G
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME----FLKSMTEVHRISPR 494
           +  K + +++++   G E +  T  ++L  C  +GL   G       +K   E  R+   
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNN 301

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVL 528
                C+++M  +     +A     R+  +PDV+
Sbjct: 302 -----CLIEMYSKCLSAEDAYEVFARID-EPDVV 329



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 87  NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRS 146
           N++V+ ++L+  Y+KC  + +A  LFD+    D V WNT++ G+ ++G        F+  
Sbjct: 597 NSSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEM 656

Query: 147 LELGFYQLDQASFTIILSACDRSEL 171
           ++ G    D+ +F  +LSAC  + L
Sbjct: 657 IDEGNVP-DEITFVGVLSACSHAGL 680


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,894,199,947
Number of Sequences: 23463169
Number of extensions: 401357502
Number of successful extensions: 1042066
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8177
Number of HSP's successfully gapped in prelim test: 3215
Number of HSP's that attempted gapping in prelim test: 870919
Number of HSP's gapped (non-prelim): 58829
length of query: 648
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 499
effective length of database: 8,863,183,186
effective search space: 4422728409814
effective search space used: 4422728409814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)