BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037816
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD + +I+ + + + P N+ +W ++ A+ + G+ KA+E Y++
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD + +I+ + + + P N+ +W A+ + G+ KA+E Y++
Sbjct: 49 LGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 42/158 (26%)
Query: 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTV---ILVGFAQNGFEEEAMQLFVKMVKAGI 354
L + Y K G ++A + ++ A ELD S + + + G +EA++ + K +
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK----AL 62
Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
E+DP A + N G N Y K GD +++I+
Sbjct: 63 ELDPRSAEA------------------------------WYNLG--NAYYKQGDYDEAIE 90
Query: 415 VFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
+ + + PR++ +W ++ A+ + G+ +A+E Y++
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 86 PNATVIWNSLLSFYLKCDQMRNAVKLFD---DMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
P + W +L + Y K A++ + ++ R +W + + + + G++D +
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 91
Query: 143 FKRSLEL 149
++++LEL
Sbjct: 92 YQKALEL 98
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 86 PNATVIWNSLLSFYLKCDQMRNAVKLFD---DMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
P + W +L + Y K A++ + ++ R +W + + + + G++D +
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 125
Query: 143 FKRSLEL 149
++++LEL
Sbjct: 126 YQKALEL 132
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD +++I+ + + + PR++ +W ++ A+ + G+ +A+E Y++
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
L N Y K GD +++I+ + + + P N+ +W ++ A+ + G+ +A+E Y++ LE
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK-ALELY 73
Query: 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489
+ +L +A G ++ +E+ + E++
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 107
Score = 28.9 bits (63), Expect = 8.2, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 86 PNATVIWNSLLSFYLKCDQMRNAVKLFD---DMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
PN W +L + Y K A++ + ++ + +W + + + + G++D +
Sbjct: 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 143 FKRSLEL 149
++++LEL
Sbjct: 100 YQKALEL 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD +++I+ + + + P N+ +W ++ A+ + G+ +A+E Y++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD +++I+ + + + P N+ +W ++ A+ + G+ +A+E Y++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 399 LINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
L N Y K GD +++I+ + + + P N+ +W ++ A+ + G+ +A+E Y++
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 86 PNATVIWNSLLSFYLKCDQMRNAVKLFD---DMPMRDTVSWNTMVSGFLRNGEFDMGFGF 142
PN W +L + Y K A++ + ++ + +W + + + + G++D +
Sbjct: 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99
Query: 143 FKRSLEL 149
++++LEL
Sbjct: 100 YQKALEL 106
>pdb|3FID|A Chain A, Lpxr From Salmonella Typhimurium
pdb|3FID|B Chain B, Lpxr From Salmonella Typhimurium
Length = 296
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD-----SPAPYILMANIYSCSGRWKER 580
D ++Q L A H ++ G Y A LFL S + + +IYS SG K +
Sbjct: 11 DAGIFQPSLNALYGHPAADRGDYTA-GLFLGYSHDLTDASQLSFHIAQDIYSPSGANKRK 69
Query: 581 AKAIKRMKEMGVDKETGISW 600
+A+K + TG+ W
Sbjct: 70 PEAVKGDRAFSAFLHTGLEW 89
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
+V+L + E A ++ + + K GI +D M + + VF + GL H+ +
Sbjct: 263 SVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLAPYYHAAVRM 322
Query: 387 SDFTSNPFVNNGL 399
S +N + NG+
Sbjct: 323 SIAAANNIMANGM 335
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 448 EEMKLEGVE----PTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
EE L VE P D+ FL+L H + V KGMEFL S +HR
Sbjct: 176 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR 224
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 448 EEMKLEGVE----PTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
EE L VE P D+ FL+L H + V KGMEFL S +HR
Sbjct: 174 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR 222
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 448 EEMKLEGVE----PTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
EE L VE P D+ FL+L H + V KGMEFL S +HR
Sbjct: 167 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR 215
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 448 EEMKLEGVE----PTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490
EE L VE P D+ FL+L H + V KGMEFL S +HR
Sbjct: 169 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHR 217
>pdb|2CO6|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (type I)
pdb|2CO7|B Chain B, Salmonella Enterica Safa Pilin In Complex With The Safb
Chaperone (Type Ii)
Length = 221
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIE 604
A SPAP+++M ++ + + + ++ +M D+ET + W+ I+
Sbjct: 51 ADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRET-LQWVCIK 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,713,269
Number of Sequences: 62578
Number of extensions: 754695
Number of successful extensions: 1814
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1795
Number of HSP's gapped (non-prelim): 37
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)