Query 037816
Match_columns 648
No_of_seqs 605 out of 4046
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 04:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.2E-94 1.8E-98 796.3 70.5 631 3-647 140-777 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-78 2.2E-83 659.7 65.1 531 117-648 84-615 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.3E-78 9.4E-83 670.5 62.8 570 11-596 48-625 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.7E-65 5.8E-70 555.9 63.1 530 43-597 369-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.2E-65 4.8E-70 555.4 50.7 469 11-494 84-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.7E-62 3.7E-67 534.0 55.3 532 84-645 365-917 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-34 7.5E-39 326.7 58.8 556 11-588 326-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.3E-33 7.1E-38 318.7 58.2 555 15-592 296-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-24 3E-29 247.9 58.1 560 11-594 59-745 (1157)
10 PRK11447 cellulose synthase su 100.0 6.6E-24 1.4E-28 242.4 55.9 550 19-591 33-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 7.7E-21 1.7E-25 207.3 56.0 540 11-590 75-706 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.8E-19 4E-24 196.6 51.3 256 331-591 384-673 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 8.9E-21 1.9E-25 183.5 36.2 444 123-579 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 8E-21 1.7E-25 183.8 29.3 421 159-591 51-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-18 3.1E-23 186.7 42.5 251 336-590 307-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 2.8E-19 6E-24 182.6 30.0 293 302-598 45-355 (389)
17 PRK15174 Vi polysaccharide exp 99.8 3.6E-17 7.8E-22 175.1 41.1 369 203-590 17-403 (656)
18 TIGR00990 3a0801s09 mitochondr 99.8 2E-16 4.3E-21 170.2 45.3 252 306-561 308-576 (615)
19 PRK10049 pgaA outer membrane p 99.8 2.9E-16 6.3E-21 171.9 46.6 364 193-562 51-462 (765)
20 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.3E-22 171.0 32.8 290 229-555 42-346 (389)
21 PRK15174 Vi polysaccharide exp 99.8 1E-16 2.2E-21 171.7 39.3 352 233-591 16-382 (656)
22 KOG2002 TPR-containing nuclear 99.8 2.7E-16 5.9E-21 160.9 40.0 517 58-592 178-747 (1018)
23 PRK10049 pgaA outer membrane p 99.8 1.5E-16 3.2E-21 174.2 40.1 394 188-590 12-456 (765)
24 KOG2002 TPR-containing nuclear 99.8 9.9E-16 2.1E-20 156.9 41.4 510 60-592 146-711 (1018)
25 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.5E-20 159.7 45.6 438 97-564 42-521 (822)
26 KOG4422 Uncharacterized conser 99.8 1.5E-14 3.2E-19 134.9 39.8 427 120-592 116-592 (625)
27 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.7E-19 154.0 45.9 450 43-535 33-525 (822)
28 KOG2076 RNA polymerase III tra 99.8 6.9E-14 1.5E-18 142.6 44.7 542 35-591 131-850 (895)
29 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.7E-19 135.4 35.2 419 46-521 118-587 (625)
30 KOG4318 Bicoid mRNA stability 99.8 7.8E-15 1.7E-19 148.5 35.5 535 34-600 16-603 (1088)
31 KOG2003 TPR repeat-containing 99.7 1.1E-14 2.5E-19 136.4 31.0 445 127-576 208-709 (840)
32 KOG0495 HAT repeat protein [RN 99.7 2.3E-12 5E-17 126.7 45.3 502 86-606 377-894 (913)
33 KOG2076 RNA polymerase III tra 99.7 8.8E-13 1.9E-17 134.8 41.9 565 8-587 167-892 (895)
34 KOG2003 TPR repeat-containing 99.7 8.1E-14 1.8E-18 130.8 25.3 427 158-590 200-689 (840)
35 KOG0495 HAT repeat protein [RN 99.6 2.2E-10 4.8E-15 113.1 48.5 528 43-600 245-854 (913)
36 PF13429 TPR_15: Tetratricopep 99.6 1.5E-15 3.3E-20 146.6 10.7 255 330-589 15-276 (280)
37 KOG0547 Translocase of outer m 99.6 8.2E-12 1.8E-16 119.0 32.2 214 370-589 338-565 (606)
38 KOG1155 Anaphase-promoting com 99.6 1.6E-10 3.5E-15 109.7 36.6 360 188-589 161-535 (559)
39 KOG1173 Anaphase-promoting com 99.5 6.2E-11 1.3E-15 115.3 33.3 482 45-589 17-517 (611)
40 PRK10747 putative protoheme IX 99.5 3.8E-11 8.2E-16 121.4 33.9 127 423-555 262-389 (398)
41 KOG1155 Anaphase-promoting com 99.5 1.2E-10 2.6E-15 110.5 33.9 255 330-589 234-494 (559)
42 KOG4318 Bicoid mRNA stability 99.5 2.9E-10 6.3E-15 116.1 38.5 572 8-591 19-809 (1088)
43 PRK10747 putative protoheme IX 99.5 1.5E-11 3.2E-16 124.4 29.7 279 235-521 97-387 (398)
44 KOG1915 Cell cycle control pro 99.5 2.9E-09 6.4E-14 101.4 41.2 540 86-636 70-674 (677)
45 KOG1915 Cell cycle control pro 99.5 2.3E-09 5E-14 102.1 39.9 447 130-589 83-584 (677)
46 KOG1126 DNA-binding cell divis 99.5 5.4E-12 1.2E-16 125.2 22.9 279 306-594 333-624 (638)
47 KOG1126 DNA-binding cell divis 99.5 6E-12 1.3E-16 124.9 22.7 279 272-562 334-626 (638)
48 TIGR00540 hemY_coli hemY prote 99.5 1.3E-10 2.8E-15 118.3 33.3 220 330-554 160-397 (409)
49 PF13429 TPR_15: Tetratricopep 99.5 5.2E-13 1.1E-17 128.9 13.2 255 229-487 15-276 (280)
50 TIGR00540 hemY_coli hemY prote 99.4 9.4E-11 2E-15 119.3 28.5 283 234-521 96-396 (409)
51 COG3071 HemY Uncharacterized e 99.4 6.5E-10 1.4E-14 104.1 31.0 286 235-555 97-389 (400)
52 KOG2047 mRNA splicing factor [ 99.4 4.5E-08 9.8E-13 97.0 44.6 549 8-579 75-712 (835)
53 COG2956 Predicted N-acetylgluc 99.4 3.5E-10 7.5E-15 102.6 27.3 216 235-452 48-277 (389)
54 KOG0547 Translocase of outer m 99.4 2.6E-09 5.5E-14 102.3 32.7 217 333-556 336-566 (606)
55 COG2956 Predicted N-acetylgluc 99.4 9.4E-10 2E-14 99.8 27.6 298 270-600 48-357 (389)
56 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.7E-15 109.5 23.3 199 391-590 29-232 (234)
57 COG3071 HemY Uncharacterized e 99.4 2.7E-09 5.8E-14 100.1 28.8 278 305-590 97-390 (400)
58 KOG2047 mRNA splicing factor [ 99.3 1E-07 2.2E-12 94.6 40.6 293 326-628 390-718 (835)
59 KOG4162 Predicted calmodulin-b 99.3 1.8E-08 3.9E-13 102.1 34.8 400 185-591 317-784 (799)
60 KOG2376 Signal recognition par 99.3 4.2E-08 9.1E-13 96.5 35.3 377 203-599 91-524 (652)
61 KOG3785 Uncharacterized conser 99.3 3.2E-09 6.9E-14 97.4 25.2 443 51-530 29-497 (557)
62 KOG3785 Uncharacterized conser 99.3 8.9E-08 1.9E-12 88.1 33.7 180 96-285 29-213 (557)
63 KOG1174 Anaphase-promoting com 99.3 4.3E-08 9.4E-13 92.1 32.0 304 254-563 191-507 (564)
64 KOG1173 Anaphase-promoting com 99.3 2.4E-08 5.1E-13 97.7 31.5 471 35-570 41-532 (611)
65 PRK12370 invasion protein regu 99.3 2.4E-09 5.2E-14 113.3 27.1 244 338-591 276-536 (553)
66 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 105.7 25.3 232 358-589 199-478 (508)
67 PF13041 PPR_2: PPR repeat fam 99.2 2.6E-11 5.7E-16 81.7 5.8 50 220-269 1-50 (50)
68 TIGR02521 type_IV_pilW type IV 99.2 8.5E-09 1.8E-13 96.9 24.4 197 325-556 33-232 (234)
69 KOG1129 TPR repeat-containing 99.2 8.7E-10 1.9E-14 100.0 16.0 224 362-590 227-458 (478)
70 PF13041 PPR_2: PPR repeat fam 99.2 7.4E-11 1.6E-15 79.5 6.8 50 422-471 1-50 (50)
71 PRK12370 invasion protein regu 99.2 5.5E-09 1.2E-13 110.6 23.1 211 373-590 276-502 (553)
72 PF12569 NARP1: NMDA receptor- 99.1 1.3E-06 2.7E-11 89.6 38.4 253 327-586 198-516 (517)
73 KOG1840 Kinesin light chain [C 99.1 6.4E-08 1.4E-12 97.7 28.1 200 328-555 246-478 (508)
74 KOG1156 N-terminal acetyltrans 99.1 1.4E-06 3.1E-11 87.0 36.3 453 45-521 9-508 (700)
75 KOG1156 N-terminal acetyltrans 99.1 1.1E-06 2.3E-11 87.8 35.3 101 492-592 366-470 (700)
76 KOG1129 TPR repeat-containing 99.1 2.3E-09 5.1E-14 97.3 15.4 233 327-564 227-466 (478)
77 KOG2376 Signal recognition par 99.1 1.5E-06 3.3E-11 85.8 35.0 442 47-521 15-517 (652)
78 COG3063 PilF Tfp pilus assembl 99.1 1.7E-08 3.6E-13 87.8 18.0 162 427-592 38-204 (250)
79 KOG3616 Selective LIM binding 99.1 1E-06 2.3E-11 88.7 33.0 74 368-448 742-815 (1636)
80 KOG1174 Anaphase-promoting com 99.1 9.8E-07 2.1E-11 83.2 30.8 387 190-591 96-501 (564)
81 PRK11189 lipoprotein NlpI; Pro 99.1 2.6E-08 5.7E-13 96.4 21.3 150 334-486 37-192 (296)
82 KOG0985 Vesicle coat protein c 99.1 1.1E-05 2.3E-10 84.6 40.2 217 95-317 487-749 (1666)
83 PRK11189 lipoprotein NlpI; Pro 99.0 1.5E-07 3.3E-12 91.0 25.8 92 326-419 67-158 (296)
84 KOG3617 WD40 and TPR repeat-co 99.0 1.9E-05 4.2E-10 81.0 39.9 222 54-319 738-994 (1416)
85 PF12569 NARP1: NMDA receptor- 99.0 1.3E-06 2.9E-11 89.4 30.2 285 198-521 11-331 (517)
86 KOG4162 Predicted calmodulin-b 99.0 2.6E-06 5.6E-11 86.9 31.4 431 86-561 320-788 (799)
87 COG3063 PilF Tfp pilus assembl 99.0 1.6E-07 3.6E-12 81.7 19.7 192 397-589 39-235 (250)
88 KOG0985 Vesicle coat protein c 99.0 6.1E-05 1.3E-09 79.2 40.9 220 323-573 1104-1325(1666)
89 KOG0548 Molecular co-chaperone 98.9 2.2E-06 4.7E-11 84.0 28.9 436 97-573 10-472 (539)
90 KOG0624 dsRNA-activated protei 98.9 3.7E-06 7.9E-11 77.5 28.0 189 367-561 164-375 (504)
91 KOG1125 TPR repeat-containing 98.9 1.1E-07 2.4E-12 93.5 19.1 220 369-591 296-528 (579)
92 PF04733 Coatomer_E: Coatomer 98.9 3.7E-08 8.1E-13 93.8 14.0 249 300-560 9-269 (290)
93 KOG3616 Selective LIM binding 98.9 8.3E-06 1.8E-10 82.5 30.3 429 103-591 545-1025(1636)
94 cd05804 StaR_like StaR_like; a 98.9 7.7E-06 1.7E-10 82.4 31.1 259 331-591 51-337 (355)
95 KOG0548 Molecular co-chaperone 98.9 4.2E-06 9.1E-11 82.0 27.3 436 52-539 10-471 (539)
96 PF04733 Coatomer_E: Coatomer 98.8 2.7E-07 5.8E-12 87.9 17.8 245 331-590 9-265 (290)
97 KOG4340 Uncharacterized conser 98.8 4.3E-06 9.3E-11 75.5 23.9 388 158-590 12-443 (459)
98 KOG1127 TPR repeat-containing 98.8 2.9E-05 6.3E-10 81.6 33.0 126 46-184 494-624 (1238)
99 KOG3617 WD40 and TPR repeat-co 98.8 5.7E-05 1.2E-09 77.7 32.2 347 87-487 724-1108(1416)
100 PRK04841 transcriptional regul 98.7 2.1E-05 4.6E-10 89.9 32.2 324 268-591 385-761 (903)
101 PRK04841 transcriptional regul 98.7 6.9E-05 1.5E-09 85.8 36.3 330 230-560 382-764 (903)
102 PRK10370 formate-dependent nit 98.7 1.5E-06 3.2E-11 78.2 17.8 147 431-591 23-174 (198)
103 TIGR03302 OM_YfiO outer membra 98.7 1.3E-06 2.7E-11 82.2 18.3 180 391-590 31-232 (235)
104 cd05804 StaR_like StaR_like; a 98.7 3.1E-05 6.7E-10 78.0 28.9 196 41-249 3-213 (355)
105 KOG0624 dsRNA-activated protei 98.7 9.1E-05 2E-09 68.6 27.9 308 195-526 42-373 (504)
106 KOG4340 Uncharacterized conser 98.7 5.6E-05 1.2E-09 68.6 26.0 312 92-420 13-337 (459)
107 KOG1127 TPR repeat-containing 98.6 5.3E-05 1.1E-09 79.7 29.0 443 122-588 494-994 (1238)
108 KOG2053 Mitochondrial inherita 98.6 0.0011 2.5E-08 69.5 39.2 505 54-588 19-606 (932)
109 KOG1914 mRNA cleavage and poly 98.6 0.00073 1.6E-08 66.8 37.6 132 86-218 17-164 (656)
110 KOG1070 rRNA processing protei 98.6 4.7E-06 1E-10 90.2 21.3 203 390-596 1455-1669(1710)
111 PF12854 PPR_1: PPR repeat 98.6 5.2E-08 1.1E-12 58.7 3.5 33 84-116 2-34 (34)
112 PRK15359 type III secretion sy 98.5 2.6E-06 5.5E-11 72.4 14.0 108 462-571 27-136 (144)
113 PRK15359 type III secretion sy 98.5 1.5E-06 3.3E-11 73.8 12.1 107 480-591 14-122 (144)
114 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 56.8 3.6 33 186-218 2-34 (34)
115 KOG1128 Uncharacterized conser 98.5 1.6E-05 3.4E-10 81.0 20.1 212 362-591 402-617 (777)
116 PRK15179 Vi polysaccharide bio 98.5 1.1E-05 2.4E-10 86.1 20.3 141 423-567 85-228 (694)
117 KOG1125 TPR repeat-containing 98.5 8.7E-06 1.9E-10 80.6 17.8 247 332-583 294-564 (579)
118 PRK15363 pathogenicity island 98.5 1.2E-05 2.6E-10 67.0 15.9 120 494-636 34-155 (157)
119 PLN02789 farnesyltranstransfer 98.5 7.4E-05 1.6E-09 72.3 23.7 211 373-587 52-299 (320)
120 PRK10370 formate-dependent nit 98.5 1.8E-05 4E-10 71.2 18.3 154 400-564 23-181 (198)
121 COG5010 TadD Flp pilus assembl 98.5 1.4E-05 3E-10 71.5 17.0 154 428-584 70-225 (257)
122 COG5010 TadD Flp pilus assembl 98.4 2.6E-05 5.7E-10 69.8 17.8 127 463-591 70-198 (257)
123 KOG1128 Uncharacterized conser 98.4 1.2E-05 2.6E-10 81.8 16.5 192 387-593 392-585 (777)
124 COG4783 Putative Zn-dependent 98.4 0.00015 3.2E-09 70.9 22.4 139 431-591 313-455 (484)
125 KOG3060 Uncharacterized conser 98.4 0.00013 2.8E-09 64.9 19.9 170 395-567 54-231 (289)
126 KOG3081 Vesicle coat complex C 98.4 0.00029 6.4E-09 63.2 22.2 249 302-561 18-276 (299)
127 TIGR03302 OM_YfiO outer membra 98.3 4.4E-05 9.6E-10 71.7 18.3 182 355-558 30-234 (235)
128 PRK14720 transcript cleavage f 98.3 0.00014 3.1E-09 78.5 23.4 44 529-572 225-268 (906)
129 TIGR02552 LcrH_SycD type III s 98.3 1.1E-05 2.3E-10 68.3 12.0 97 494-590 16-114 (135)
130 PLN02789 farnesyltranstransfer 98.3 0.00066 1.4E-08 65.8 25.2 222 332-559 46-305 (320)
131 PRK15179 Vi polysaccharide bio 98.3 0.00019 4.1E-09 76.9 23.1 142 388-533 81-228 (694)
132 KOG1070 rRNA processing protei 98.3 0.00019 4.2E-09 78.3 22.4 226 355-583 1455-1693(1710)
133 COG4783 Putative Zn-dependent 98.3 0.00012 2.7E-09 71.4 19.0 122 468-591 315-438 (484)
134 KOG3081 Vesicle coat complex C 98.2 0.00026 5.6E-09 63.6 19.3 244 330-589 15-270 (299)
135 PRK14720 transcript cleavage f 98.2 0.0004 8.6E-09 75.2 23.9 240 150-435 25-268 (906)
136 TIGR02552 LcrH_SycD type III s 98.2 4.5E-05 9.8E-10 64.4 13.7 114 446-563 5-121 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.8E-05 8.3E-10 75.8 14.3 122 462-588 172-295 (395)
138 KOG3060 Uncharacterized conser 98.1 0.0003 6.5E-09 62.7 17.0 163 426-592 54-222 (289)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.5E-09 72.5 15.9 129 394-525 170-298 (395)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.3E-09 62.9 13.9 114 472-586 24-143 (145)
141 TIGR00756 PPR pentatricopeptid 98.1 7.7E-06 1.7E-10 50.1 4.4 35 223-257 1-35 (35)
142 KOG1914 mRNA cleavage and poly 98.1 0.017 3.7E-07 57.5 39.2 431 119-579 19-528 (656)
143 PF12895 Apc3: Anaphase-promot 98.0 6.8E-06 1.5E-10 62.5 4.2 78 508-586 2-83 (84)
144 PF09976 TPR_21: Tetratricopep 98.0 0.00046 1E-08 58.9 15.7 125 426-553 14-144 (145)
145 TIGR00756 PPR pentatricopeptid 98.0 1.2E-05 2.7E-10 49.2 4.4 35 121-155 1-35 (35)
146 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.7E-10 48.8 4.2 33 121-153 2-34 (34)
147 cd00189 TPR Tetratricopeptide 98.0 8.3E-05 1.8E-09 58.0 10.2 93 498-590 3-97 (100)
148 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00011 2.3E-09 60.4 11.1 93 498-590 5-105 (119)
149 PF13812 PPR_3: Pentatricopept 98.0 1.4E-05 2.9E-10 48.6 4.1 33 223-255 2-34 (34)
150 PF13414 TPR_11: TPR repeat; P 97.9 2.7E-05 5.9E-10 56.7 6.1 65 526-590 2-67 (69)
151 PF04840 Vps16_C: Vps16, C-ter 97.9 0.026 5.6E-07 54.7 27.6 109 396-521 180-288 (319)
152 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00024 5.2E-09 58.3 12.1 105 461-565 4-114 (119)
153 PLN03088 SGT1, suppressor of 97.8 0.00039 8.4E-09 69.1 14.1 99 467-567 10-110 (356)
154 PF13432 TPR_16: Tetratricopep 97.8 4.7E-05 1E-09 54.5 5.7 58 533-590 3-60 (65)
155 KOG2053 Mitochondrial inherita 97.8 0.071 1.5E-06 56.7 43.9 122 101-226 21-149 (932)
156 KOG0553 TPR repeat-containing 97.8 7.8E-05 1.7E-09 68.2 7.6 101 467-570 89-192 (304)
157 KOG0553 TPR repeat-containing 97.8 0.00021 4.5E-09 65.5 10.2 101 432-537 89-192 (304)
158 KOG0550 Molecular chaperone (D 97.7 0.0013 2.8E-08 62.9 15.2 155 433-591 178-351 (486)
159 PRK02603 photosystem I assembl 97.7 0.0004 8.7E-09 61.3 11.0 95 495-589 35-148 (172)
160 CHL00033 ycf3 photosystem I as 97.7 0.00042 9.1E-09 61.0 10.6 94 494-587 34-139 (168)
161 PLN03088 SGT1, suppressor of 97.6 0.00075 1.6E-08 67.1 12.9 102 430-534 8-110 (356)
162 cd00189 TPR Tetratricopeptide 97.6 0.00069 1.5E-08 52.6 10.3 92 465-558 6-99 (100)
163 PF13371 TPR_9: Tetratricopept 97.6 0.0002 4.3E-09 52.7 6.5 59 534-592 2-60 (73)
164 PF01535 PPR: PPR repeat; Int 97.6 7.6E-05 1.7E-09 44.0 3.4 31 223-253 1-31 (31)
165 PRK10153 DNA-binding transcrip 97.6 0.0031 6.7E-08 65.6 17.2 139 421-561 334-487 (517)
166 PF01535 PPR: PPR repeat; Int 97.6 8.1E-05 1.8E-09 43.9 3.4 31 121-151 1-31 (31)
167 COG4235 Cytochrome c biogenesi 97.6 0.002 4.4E-08 59.6 13.5 101 492-592 153-258 (287)
168 PRK02603 photosystem I assembl 97.6 0.003 6.5E-08 55.7 14.4 130 424-576 35-166 (172)
169 PF07079 DUF1347: Protein of u 97.6 0.098 2.1E-06 51.3 34.9 188 394-587 299-521 (549)
170 PF12895 Apc3: Anaphase-promot 97.5 0.00024 5.3E-09 53.9 6.2 79 437-519 2-82 (84)
171 PF05843 Suf: Suppressor of fo 97.5 0.0024 5.2E-08 61.2 14.3 134 425-561 2-141 (280)
172 PF14559 TPR_19: Tetratricopep 97.5 0.00011 2.5E-09 53.1 4.1 53 538-590 2-54 (68)
173 PF13432 TPR_16: Tetratricopep 97.5 0.00041 8.9E-09 49.6 6.6 61 501-561 3-65 (65)
174 PRK15331 chaperone protein Sic 97.5 0.0095 2.1E-07 50.3 14.9 89 501-589 43-133 (165)
175 COG4700 Uncharacterized protei 97.4 0.021 4.5E-07 48.7 16.4 129 455-587 85-219 (251)
176 PRK10153 DNA-binding transcrip 97.4 0.006 1.3E-07 63.5 16.6 138 454-595 332-487 (517)
177 PF05843 Suf: Suppressor of fo 97.4 0.0021 4.6E-08 61.5 11.7 129 460-590 2-136 (280)
178 PF08579 RPM2: Mitochondrial r 97.4 0.0024 5.2E-08 49.5 9.4 80 226-305 29-117 (120)
179 COG3898 Uncharacterized membra 97.4 0.16 3.4E-06 48.9 27.7 276 305-594 97-396 (531)
180 PF08579 RPM2: Mitochondrial r 97.4 0.0032 7E-08 48.8 10.0 77 329-405 31-116 (120)
181 PF04840 Vps16_C: Vps16, C-ter 97.3 0.18 3.8E-06 49.0 27.4 44 91-139 2-45 (319)
182 PF14938 SNAP: Soluble NSF att 97.3 0.13 2.8E-06 49.6 23.4 160 225-425 97-269 (282)
183 PRK10866 outer membrane biogen 97.3 0.067 1.4E-06 49.9 20.5 173 399-588 38-239 (243)
184 PF12688 TPR_5: Tetratrico pep 97.3 0.0042 9.1E-08 50.2 10.7 87 501-587 7-101 (120)
185 KOG1538 Uncharacterized conser 97.3 0.065 1.4E-06 54.6 20.5 282 85-453 552-846 (1081)
186 PRK15363 pathogenicity island 97.3 0.038 8.2E-07 46.5 16.2 95 423-521 34-129 (157)
187 PF13414 TPR_11: TPR repeat; P 97.2 0.0008 1.7E-08 48.8 5.6 65 494-558 2-69 (69)
188 PF10037 MRP-S27: Mitochondria 97.2 0.0049 1.1E-07 61.4 12.5 116 291-406 65-186 (429)
189 PF10037 MRP-S27: Mitochondria 97.2 0.0042 9.2E-08 61.9 11.8 118 188-305 63-186 (429)
190 PF07079 DUF1347: Protein of u 97.2 0.27 5.8E-06 48.4 33.9 248 98-352 15-327 (549)
191 PF13281 DUF4071: Domain of un 97.2 0.072 1.6E-06 52.1 19.8 161 398-561 146-339 (374)
192 PRK10803 tol-pal system protei 97.2 0.0035 7.6E-08 58.9 10.7 84 506-589 154-245 (263)
193 KOG2041 WD40 repeat protein [G 97.2 0.38 8.2E-06 49.8 26.7 173 153-346 690-875 (1189)
194 KOG1130 Predicted G-alpha GTPa 97.2 0.0022 4.7E-08 61.3 9.0 130 460-589 196-343 (639)
195 CHL00033 ycf3 photosystem I as 97.2 0.0086 1.9E-07 52.6 12.5 97 463-560 39-153 (168)
196 PF14559 TPR_19: Tetratricopep 97.2 0.0005 1.1E-08 49.7 3.8 59 471-531 3-62 (68)
197 PF13431 TPR_17: Tetratricopep 97.1 0.00048 1E-08 41.3 2.4 33 550-582 2-34 (34)
198 KOG2280 Vacuolar assembly/sort 97.0 0.56 1.2E-05 49.2 30.9 111 394-520 685-795 (829)
199 PRK10866 outer membrane biogen 97.0 0.12 2.6E-06 48.2 19.1 54 300-353 40-99 (243)
200 PLN03098 LPA1 LOW PSII ACCUMUL 97.0 0.0031 6.8E-08 62.2 8.8 65 526-590 74-141 (453)
201 COG4700 Uncharacterized protei 97.0 0.18 4E-06 43.2 17.8 133 422-554 87-220 (251)
202 PF14938 SNAP: Soluble NSF att 97.0 0.36 7.8E-06 46.5 28.3 94 428-521 159-263 (282)
203 PF12688 TPR_5: Tetratrico pep 97.0 0.026 5.6E-07 45.6 12.4 92 430-521 7-101 (120)
204 KOG0550 Molecular chaperone (D 96.9 0.059 1.3E-06 52.0 15.9 162 402-567 178-360 (486)
205 KOG0543 FKBP-type peptidyl-pro 96.9 0.015 3.2E-07 56.2 11.9 63 527-589 257-319 (397)
206 KOG2796 Uncharacterized conser 96.8 0.066 1.4E-06 48.4 14.6 131 463-594 181-319 (366)
207 PRK10803 tol-pal system protei 96.8 0.022 4.7E-07 53.6 12.3 101 461-561 145-251 (263)
208 PF13428 TPR_14: Tetratricopep 96.8 0.0023 4.9E-08 41.3 3.9 42 528-569 2-43 (44)
209 PF13424 TPR_12: Tetratricopep 96.8 0.0023 4.9E-08 47.7 4.5 63 527-589 5-74 (78)
210 PF03704 BTAD: Bacterial trans 96.7 0.029 6.3E-07 47.8 11.9 113 470-596 17-136 (146)
211 PF06239 ECSIT: Evolutionarily 96.7 0.017 3.7E-07 51.0 10.1 88 321-408 45-153 (228)
212 PF06239 ECSIT: Evolutionarily 96.7 0.011 2.5E-07 52.0 9.0 97 109-206 34-153 (228)
213 COG4235 Cytochrome c biogenesi 96.7 0.061 1.3E-06 50.1 14.2 104 456-561 153-261 (287)
214 KOG1538 Uncharacterized conser 96.7 0.062 1.3E-06 54.8 14.8 97 16-116 558-659 (1081)
215 PF09205 DUF1955: Domain of un 96.7 0.2 4.2E-06 40.3 14.5 141 434-593 12-152 (161)
216 KOG2041 WD40 repeat protein [G 96.6 1.2 2.5E-05 46.5 25.1 29 188-216 689-717 (1189)
217 PF13371 TPR_9: Tetratricopept 96.6 0.0084 1.8E-07 43.9 6.4 63 503-565 3-67 (73)
218 KOG2796 Uncharacterized conser 96.5 0.29 6.2E-06 44.5 15.9 135 425-560 178-319 (366)
219 PF13525 YfiO: Outer membrane 96.4 0.15 3.2E-06 46.3 14.8 141 430-590 11-170 (203)
220 KOG2280 Vacuolar assembly/sort 96.4 1.6 3.4E-05 46.0 34.2 327 226-586 441-795 (829)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.4 1.2 2.6E-05 43.9 33.1 80 86-165 39-121 (660)
222 KOG0543 FKBP-type peptidyl-pro 96.3 0.067 1.5E-06 51.8 12.0 96 495-590 257-355 (397)
223 KOG1130 Predicted G-alpha GTPa 96.3 0.035 7.6E-07 53.4 9.9 129 427-555 198-343 (639)
224 PF12921 ATP13: Mitochondrial 96.3 0.054 1.2E-06 44.3 9.8 51 454-504 47-97 (126)
225 PF13424 TPR_12: Tetratricopep 96.2 0.0076 1.6E-07 44.9 4.5 59 497-555 7-74 (78)
226 PF13525 YfiO: Outer membrane 96.2 0.28 6.1E-06 44.5 15.2 162 401-581 13-198 (203)
227 PF03704 BTAD: Bacterial trans 96.1 0.14 3E-06 43.6 12.3 71 426-497 64-138 (146)
228 PF13281 DUF4071: Domain of un 95.9 0.7 1.5E-05 45.5 17.3 163 427-590 144-334 (374)
229 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.046 1E-06 54.2 9.1 63 494-556 74-141 (453)
230 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.1 4.6E-05 42.3 31.9 127 461-589 399-530 (660)
231 COG1729 Uncharacterized protei 95.8 0.077 1.7E-06 48.8 9.7 57 533-589 184-243 (262)
232 COG0457 NrfG FOG: TPR repeat [ 95.8 1.5 3.3E-05 40.3 27.0 195 394-590 60-265 (291)
233 COG3118 Thioredoxin domain-con 95.7 0.52 1.1E-05 44.0 14.5 120 468-590 143-265 (304)
234 PRK11906 transcriptional regul 95.5 1.2 2.5E-05 44.8 17.2 144 439-585 273-431 (458)
235 KOG4555 TPR repeat-containing 95.5 0.16 3.5E-06 40.6 8.9 88 504-591 52-145 (175)
236 PRK11906 transcriptional regul 95.4 0.28 6.2E-06 48.9 12.6 117 474-590 273-401 (458)
237 PF13512 TPR_18: Tetratricopep 95.4 0.59 1.3E-05 38.7 12.3 19 543-561 115-133 (142)
238 PF13512 TPR_18: Tetratricopep 95.3 0.46 1E-05 39.3 11.6 88 503-590 18-128 (142)
239 PF12921 ATP13: Mitochondrial 95.3 0.21 4.5E-06 40.9 9.6 77 459-535 2-96 (126)
240 PF04184 ST7: ST7 protein; In 95.3 1.1 2.5E-05 45.0 16.0 101 461-561 261-380 (539)
241 PF10300 DUF3808: Protein of u 94.9 1.1 2.5E-05 46.4 16.1 115 472-589 246-375 (468)
242 COG0457 NrfG FOG: TPR repeat [ 94.9 3.1 6.6E-05 38.2 26.6 199 359-559 60-268 (291)
243 PF04053 Coatomer_WDAD: Coatom 94.9 1.4 3.1E-05 45.0 16.2 155 129-316 270-426 (443)
244 COG3898 Uncharacterized membra 94.8 4.3 9.4E-05 39.5 26.2 58 360-419 331-389 (531)
245 KOG2114 Vacuolar assembly/sort 94.7 3.9 8.5E-05 43.9 18.8 147 91-246 336-487 (933)
246 KOG4555 TPR repeat-containing 94.7 0.097 2.1E-06 41.8 5.7 56 535-590 51-106 (175)
247 PRK11619 lytic murein transgly 94.7 8 0.00017 41.9 32.4 73 298-372 105-177 (644)
248 KOG4234 TPR repeat-containing 94.6 0.12 2.5E-06 44.8 6.5 56 535-590 142-197 (271)
249 PF07719 TPR_2: Tetratricopept 94.6 0.11 2.4E-06 30.9 4.8 32 529-560 3-34 (34)
250 COG3118 Thioredoxin domain-con 94.6 3.2 6.9E-05 39.0 16.0 170 411-582 121-293 (304)
251 KOG2610 Uncharacterized conser 94.6 0.32 7E-06 45.8 9.7 159 436-597 115-283 (491)
252 KOG2114 Vacuolar assembly/sort 94.5 8.2 0.00018 41.6 29.6 176 122-320 336-518 (933)
253 COG1729 Uncharacterized protei 94.5 0.42 9.1E-06 44.1 10.3 61 501-561 184-249 (262)
254 PF00515 TPR_1: Tetratricopept 94.5 0.088 1.9E-06 31.4 4.1 32 528-559 2-33 (34)
255 smart00299 CLH Clathrin heavy 94.5 2.6 5.6E-05 35.4 14.8 125 428-572 11-136 (140)
256 KOG3941 Intermediate in Toll s 94.4 0.38 8.2E-06 44.2 9.6 99 311-409 53-174 (406)
257 PRK15331 chaperone protein Sic 94.4 1.2 2.5E-05 38.0 11.8 84 435-521 48-131 (165)
258 KOG1920 IkappaB kinase complex 94.3 9.1 0.0002 43.0 21.1 54 466-521 972-1025(1265)
259 smart00299 CLH Clathrin heavy 94.2 2.8 6.1E-05 35.2 14.4 28 123-150 10-37 (140)
260 PF02259 FAT: FAT domain; Int 93.8 8 0.00017 38.6 19.5 149 423-574 145-305 (352)
261 PF08631 SPO22: Meiosis protei 93.8 6.7 0.00014 37.6 24.9 17 537-553 256-272 (278)
262 PF04053 Coatomer_WDAD: Coatom 93.7 1.8 3.9E-05 44.3 14.1 154 403-586 271-427 (443)
263 KOG1258 mRNA processing protei 93.6 10 0.00022 39.4 28.9 180 291-472 296-488 (577)
264 COG4105 ComL DNA uptake lipopr 93.4 6.3 0.00014 36.3 20.0 56 533-588 173-231 (254)
265 PF13176 TPR_7: Tetratricopept 93.4 0.15 3.2E-06 31.0 3.7 26 563-588 1-26 (36)
266 COG3629 DnrI DNA-binding trans 93.4 0.4 8.7E-06 45.0 8.1 69 528-596 154-227 (280)
267 KOG3941 Intermediate in Toll s 93.3 0.65 1.4E-05 42.7 9.0 110 108-218 53-186 (406)
268 KOG1941 Acetylcholine receptor 93.2 5.6 0.00012 38.3 15.1 124 398-521 127-272 (518)
269 KOG1585 Protein required for f 93.1 6.8 0.00015 35.6 16.7 142 426-584 93-250 (308)
270 COG4105 ComL DNA uptake lipopr 93.0 7.4 0.00016 35.9 17.6 158 404-561 45-238 (254)
271 COG4785 NlpI Lipoprotein NlpI, 93.0 6.4 0.00014 35.1 15.1 160 423-590 98-266 (297)
272 PF10300 DUF3808: Protein of u 92.9 7.9 0.00017 40.3 17.7 157 327-486 192-374 (468)
273 PF13428 TPR_14: Tetratricopep 92.7 0.29 6.3E-06 31.3 4.5 38 122-161 3-40 (44)
274 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.81 1.8E-05 30.6 6.5 51 563-639 3-53 (53)
275 PF09205 DUF1955: Domain of un 92.5 4.9 0.00011 32.7 12.4 137 232-389 12-151 (161)
276 KOG1941 Acetylcholine receptor 92.4 3.9 8.5E-05 39.3 12.9 48 333-380 16-65 (518)
277 PF04184 ST7: ST7 protein; In 92.3 3.6 7.8E-05 41.6 13.3 151 436-598 180-332 (539)
278 PF13176 TPR_7: Tetratricopept 92.3 0.27 5.9E-06 29.8 3.7 27 529-555 1-27 (36)
279 KOG4648 Uncharacterized conser 92.2 0.26 5.7E-06 46.4 5.2 109 465-581 103-215 (536)
280 KOG1586 Protein required for f 92.1 6.7 0.00015 35.4 13.3 76 501-576 119-203 (288)
281 KOG1258 mRNA processing protei 92.1 17 0.00036 37.8 34.1 181 392-575 296-489 (577)
282 KOG2610 Uncharacterized conser 91.9 4.9 0.00011 38.3 12.8 153 334-487 114-275 (491)
283 PF07035 Mic1: Colon cancer-as 91.9 6.8 0.00015 33.8 12.9 134 140-286 14-149 (167)
284 PF10345 Cohesin_load: Cohesin 91.8 22 0.00048 38.6 33.1 193 86-284 27-252 (608)
285 PF09613 HrpB1_HrpK: Bacterial 91.8 2.2 4.8E-05 36.2 9.7 117 90-212 8-130 (160)
286 KOG1920 IkappaB kinase complex 91.8 27 0.00059 39.5 21.0 258 86-421 788-1054(1265)
287 KOG1585 Protein required for f 91.7 10 0.00023 34.5 16.1 25 225-249 34-58 (308)
288 COG4649 Uncharacterized protei 91.6 4.2 9.2E-05 34.8 11.0 119 434-555 68-195 (221)
289 PF13181 TPR_8: Tetratricopept 91.6 0.4 8.7E-06 28.4 4.0 31 529-559 3-33 (34)
290 PF13762 MNE1: Mitochondrial s 91.3 2.3 5.1E-05 35.4 9.3 115 56-173 6-132 (145)
291 PF02259 FAT: FAT domain; Int 91.3 11 0.00024 37.5 16.6 66 525-590 144-213 (352)
292 KOG4234 TPR repeat-containing 91.1 3.1 6.8E-05 36.4 10.0 101 468-570 104-211 (271)
293 PRK09687 putative lyase; Provi 90.7 16 0.00035 35.0 26.8 136 423-571 141-277 (280)
294 PRK09687 putative lyase; Provi 90.4 17 0.00037 34.8 27.2 75 391-470 204-278 (280)
295 PF13170 DUF4003: Protein of u 90.3 7.6 0.00016 37.4 13.2 62 340-401 160-225 (297)
296 KOG3364 Membrane protein invol 90.0 3.7 8E-05 33.5 8.9 47 543-589 51-99 (149)
297 PF08631 SPO22: Meiosis protei 90.0 19 0.0004 34.6 24.4 21 568-588 253-273 (278)
298 PF04097 Nic96: Nup93/Nic96; 89.9 33 0.00071 37.3 24.3 56 95-150 117-182 (613)
299 PF07719 TPR_2: Tetratricopept 89.7 0.47 1E-05 28.1 3.1 29 562-590 2-30 (34)
300 KOG0276 Vesicle coat complex C 89.5 4.7 0.0001 41.6 11.3 162 119-317 580-746 (794)
301 COG1747 Uncharacterized N-term 89.4 27 0.00059 35.6 23.0 175 391-572 64-250 (711)
302 TIGR02561 HrpB1_HrpK type III 89.2 3 6.6E-05 34.7 8.1 40 537-576 54-93 (153)
303 COG2909 MalT ATP-dependent tra 89.0 40 0.00087 37.1 20.3 52 436-487 470-525 (894)
304 COG2976 Uncharacterized protei 88.9 16 0.00034 32.2 13.0 88 467-559 97-191 (207)
305 PRK15180 Vi polysaccharide bio 88.8 6.8 0.00015 39.2 11.5 121 436-560 301-424 (831)
306 PF10602 RPN7: 26S proteasome 88.7 10 0.00023 33.3 11.9 62 426-487 38-101 (177)
307 KOG0890 Protein kinase of the 88.6 72 0.0016 39.5 32.0 63 527-591 1670-1732(2382)
308 PF00515 TPR_1: Tetratricopept 88.6 0.64 1.4E-05 27.5 3.1 29 562-590 2-30 (34)
309 KOG1464 COP9 signalosome, subu 88.3 21 0.00046 33.0 16.6 255 306-566 41-342 (440)
310 PF07035 Mic1: Colon cancer-as 88.1 16 0.00035 31.5 15.4 55 296-350 93-147 (167)
311 COG3629 DnrI DNA-binding trans 88.1 5.4 0.00012 37.7 10.1 60 427-487 156-215 (280)
312 PF13929 mRNA_stabil: mRNA sta 88.0 17 0.00036 34.4 13.0 55 189-243 200-259 (292)
313 PF09613 HrpB1_HrpK: Bacterial 87.8 3.8 8.2E-05 34.8 8.0 98 496-594 8-110 (160)
314 COG2976 Uncharacterized protei 87.8 16 0.00034 32.2 11.8 91 500-591 94-189 (207)
315 KOG2066 Vacuolar assembly/sort 87.5 46 0.00099 36.0 22.4 31 394-424 506-536 (846)
316 PF14432 DYW_deaminase: DYW fa 87.3 0.65 1.4E-05 37.4 3.2 40 597-648 2-41 (116)
317 PF13174 TPR_6: Tetratricopept 86.9 1.5 3.2E-05 25.6 3.9 26 534-559 7-32 (33)
318 PF06552 TOM20_plant: Plant sp 86.8 8.9 0.00019 33.3 9.8 67 522-595 63-141 (186)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 4.9 0.00011 30.6 7.1 63 439-503 22-84 (103)
320 PF02284 COX5A: Cytochrome c o 86.5 5.1 0.00011 30.9 7.2 49 521-569 39-87 (108)
321 PRK10941 hypothetical protein; 86.4 6.2 0.00013 37.3 9.7 62 530-591 184-245 (269)
322 PRK11619 lytic murein transgly 86.4 55 0.0012 35.7 38.4 248 336-596 254-511 (644)
323 PF07721 TPR_4: Tetratricopept 86.4 0.97 2.1E-05 24.9 2.7 24 562-585 2-25 (26)
324 PF13374 TPR_10: Tetratricopep 86.3 1.3 2.8E-05 27.6 3.7 28 562-589 3-30 (42)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 86.2 4.7 0.0001 30.6 6.9 48 522-569 37-84 (103)
326 PF02284 COX5A: Cytochrome c o 85.7 4.4 9.5E-05 31.2 6.5 60 442-503 28-87 (108)
327 COG4649 Uncharacterized protei 85.5 23 0.0005 30.5 15.7 118 403-521 68-193 (221)
328 PF13174 TPR_6: Tetratricopept 85.2 1.1 2.5E-05 26.0 2.9 28 563-590 2-29 (33)
329 PF10602 RPN7: 26S proteasome 85.0 11 0.00024 33.1 10.1 94 394-487 37-141 (177)
330 KOG4570 Uncharacterized conser 84.9 8.1 0.00018 36.5 9.2 98 387-488 58-164 (418)
331 PF13181 TPR_8: Tetratricopept 84.5 2.1 4.5E-05 25.2 3.8 29 562-590 2-30 (34)
332 KOG4648 Uncharacterized conser 84.3 3.2 6.9E-05 39.5 6.5 86 431-527 104-198 (536)
333 KOG4642 Chaperone-dependent E3 83.4 2.9 6.2E-05 37.8 5.5 82 508-589 23-106 (284)
334 PF13170 DUF4003: Protein of u 83.2 46 0.00099 32.2 17.6 146 440-587 78-243 (297)
335 PF06552 TOM20_plant: Plant sp 83.1 3.5 7.6E-05 35.6 5.7 48 542-589 50-108 (186)
336 KOG0890 Protein kinase of the 82.8 1.4E+02 0.003 37.3 29.2 95 229-329 1456-1552(2382)
337 PRK15180 Vi polysaccharide bio 82.0 12 0.00027 37.5 9.7 133 400-535 296-433 (831)
338 PF14853 Fis1_TPR_C: Fis1 C-te 81.9 4 8.6E-05 27.3 4.5 32 532-563 6-37 (53)
339 COG4455 ImpE Protein of avirul 81.8 6.2 0.00013 35.2 6.8 64 498-561 4-69 (273)
340 PF00637 Clathrin: Region in C 81.6 1.4 2.9E-05 37.3 2.9 84 162-248 13-96 (143)
341 smart00028 TPR Tetratricopepti 81.6 2.9 6.3E-05 23.5 3.7 27 532-558 6-32 (34)
342 PF11207 DUF2989: Protein of u 81.6 8.6 0.00019 34.1 7.7 70 512-581 123-198 (203)
343 PF00637 Clathrin: Region in C 81.5 2.4 5.3E-05 35.7 4.5 88 47-147 10-97 (143)
344 PF13374 TPR_10: Tetratricopep 81.1 4 8.6E-05 25.3 4.4 28 528-555 3-30 (42)
345 TIGR02561 HrpB1_HrpK type III 81.1 18 0.00038 30.4 8.9 99 89-190 7-111 (153)
346 TIGR03504 FimV_Cterm FimV C-te 81.0 3.3 7.2E-05 26.4 3.7 27 565-591 3-29 (44)
347 TIGR02508 type_III_yscG type I 80.6 24 0.00052 27.2 8.8 62 298-362 45-106 (115)
348 PF09986 DUF2225: Uncharacteri 80.5 12 0.00027 34.0 8.8 64 528-591 119-195 (214)
349 COG4455 ImpE Protein of avirul 80.3 9.7 0.00021 34.1 7.5 78 426-504 3-81 (273)
350 PF04910 Tcf25: Transcriptiona 79.6 50 0.0011 33.0 13.5 64 526-589 99-167 (360)
351 PF13431 TPR_17: Tetratricopep 78.9 3.9 8.5E-05 24.3 3.4 24 390-413 10-33 (34)
352 KOG1550 Extracellular protein 78.6 99 0.0022 33.2 16.4 117 474-595 308-431 (552)
353 KOG1308 Hsp70-interacting prot 78.6 1.3 2.7E-05 42.3 1.8 91 507-597 126-218 (377)
354 COG2909 MalT ATP-dependent tra 77.9 1.2E+02 0.0026 33.7 25.8 217 368-587 425-685 (894)
355 KOG0545 Aryl-hydrocarbon recep 77.7 19 0.00042 32.9 8.7 58 533-590 236-293 (329)
356 COG3947 Response regulator con 77.0 8.8 0.00019 35.9 6.6 60 530-589 282-341 (361)
357 COG4785 NlpI Lipoprotein NlpI, 76.8 57 0.0012 29.4 15.1 159 392-558 98-268 (297)
358 PF04097 Nic96: Nup93/Nic96; 76.5 1.2E+02 0.0026 33.0 21.1 43 227-270 116-158 (613)
359 KOG4570 Uncharacterized conser 76.1 22 0.00047 33.8 8.9 101 287-388 59-165 (418)
360 KOG1550 Extracellular protein 76.0 1.2E+02 0.0026 32.6 22.4 147 439-591 379-539 (552)
361 PF07721 TPR_4: Tetratricopept 75.8 5.2 0.00011 22.0 3.1 19 500-518 6-24 (26)
362 PF14561 TPR_20: Tetratricopep 75.5 8.9 0.00019 29.2 5.4 43 548-590 9-51 (90)
363 TIGR02508 type_III_yscG type I 74.9 37 0.00079 26.3 9.8 87 374-464 21-107 (115)
364 KOG0276 Vesicle coat complex C 73.8 30 0.00065 36.1 9.9 75 100-186 648-722 (794)
365 PF11207 DUF2989: Protein of u 73.4 31 0.00068 30.7 8.8 73 441-514 123-197 (203)
366 KOG0376 Serine-threonine phosp 73.2 7.5 0.00016 39.2 5.6 84 506-589 15-100 (476)
367 smart00028 TPR Tetratricopepti 72.5 6.8 0.00015 21.8 3.5 29 562-590 2-30 (34)
368 PF12968 DUF3856: Domain of Un 72.0 41 0.0009 26.9 8.2 62 526-587 54-126 (144)
369 KOG4507 Uncharacterized conser 71.8 11 0.00024 38.9 6.4 100 470-572 618-721 (886)
370 PF10579 Rapsyn_N: Rapsyn N-te 71.6 8 0.00017 28.2 4.0 45 539-583 18-65 (80)
371 KOG4279 Serine/threonine prote 71.2 92 0.002 33.6 12.8 52 502-563 351-402 (1226)
372 KOG1498 26S proteasome regulat 70.6 1.2E+02 0.0025 30.2 14.4 218 371-620 25-271 (439)
373 PF07163 Pex26: Pex26 protein; 70.1 57 0.0012 30.7 10.0 56 330-385 90-145 (309)
374 KOG1586 Protein required for f 69.9 90 0.002 28.6 19.0 18 470-487 165-182 (288)
375 smart00386 HAT HAT (Half-A-TPR 69.5 9.2 0.0002 21.8 3.5 30 541-570 1-30 (33)
376 PRK12798 chemotaxis protein; R 69.3 1.3E+02 0.0028 30.3 22.1 179 406-587 125-321 (421)
377 KOG2066 Vacuolar assembly/sort 69.2 1.8E+02 0.0039 31.8 29.3 71 465-547 640-710 (846)
378 PRK13342 recombination factor 68.2 1.5E+02 0.0032 30.4 15.4 101 254-372 173-279 (413)
379 COG3947 Response regulator con 67.9 1.1E+02 0.0025 29.0 13.9 58 497-554 281-340 (361)
380 PRK10941 hypothetical protein; 67.1 24 0.00052 33.4 7.4 66 499-564 185-252 (269)
381 KOG4077 Cytochrome c oxidase, 66.5 30 0.00066 27.9 6.5 49 520-568 77-125 (149)
382 PF12862 Apc5: Anaphase-promot 66.3 23 0.00049 27.2 6.0 53 537-589 8-69 (94)
383 KOG4077 Cytochrome c oxidase, 65.9 41 0.0009 27.2 7.1 59 442-502 67-125 (149)
384 KOG0551 Hsp90 co-chaperone CNS 65.6 30 0.00066 33.2 7.5 90 498-587 84-179 (390)
385 PF09670 Cas_Cas02710: CRISPR- 64.6 1.2E+02 0.0027 30.5 12.4 54 433-487 140-197 (379)
386 KOG3364 Membrane protein invol 64.4 57 0.0012 26.9 7.8 71 492-562 29-106 (149)
387 KOG3807 Predicted membrane pro 64.3 88 0.0019 30.1 10.2 55 430-486 281-338 (556)
388 PF14669 Asp_Glu_race_2: Putat 62.4 1.1E+02 0.0024 27.0 12.2 53 195-247 136-206 (233)
389 TIGR03504 FimV_Cterm FimV C-te 62.4 19 0.00041 23.0 3.9 25 430-454 5-29 (44)
390 KOG2422 Uncharacterized conser 62.2 1.6E+02 0.0035 30.9 12.3 52 503-554 350-405 (665)
391 PF13934 ELYS: Nuclear pore co 62.1 71 0.0015 29.5 9.4 21 501-521 114-134 (226)
392 KOG0403 Neoplastic transformat 60.2 2E+02 0.0043 29.2 16.7 55 429-486 514-570 (645)
393 PHA02875 ankyrin repeat protei 59.6 2.1E+02 0.0046 29.2 17.0 148 198-358 72-230 (413)
394 PF10579 Rapsyn_N: Rapsyn N-te 58.4 23 0.00051 25.9 4.3 15 473-487 20-34 (80)
395 cd08819 CARD_MDA5_2 Caspase ac 58.3 77 0.0017 23.8 7.1 38 304-342 48-85 (88)
396 PF13762 MNE1: Mitochondrial s 58.3 1.1E+02 0.0024 25.7 10.3 50 322-371 78-128 (145)
397 PF07163 Pex26: Pex26 protein; 58.0 97 0.0021 29.3 9.1 85 229-315 90-181 (309)
398 COG0790 FOG: TPR repeat, SEL1 57.7 1.8E+02 0.0039 27.9 19.5 115 474-592 128-268 (292)
399 PHA02875 ankyrin repeat protei 57.5 1.9E+02 0.0041 29.5 12.9 114 198-319 39-159 (413)
400 cd08819 CARD_MDA5_2 Caspase ac 57.3 63 0.0014 24.3 6.4 65 176-242 22-86 (88)
401 PF09477 Type_III_YscG: Bacter 56.7 96 0.0021 24.4 8.9 79 272-353 21-99 (116)
402 PF04910 Tcf25: Transcriptiona 55.8 2.3E+02 0.0049 28.4 18.1 56 431-486 110-166 (360)
403 COG4976 Predicted methyltransf 55.6 23 0.00049 32.1 4.7 54 537-590 5-58 (287)
404 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 73 0.0016 26.1 7.4 42 545-586 81-124 (126)
405 KOG1464 COP9 signalosome, subu 55.3 1.8E+02 0.004 27.2 17.9 183 335-517 39-253 (440)
406 PF14863 Alkyl_sulf_dimr: Alky 54.2 54 0.0012 27.5 6.5 64 511-577 57-120 (141)
407 PF11846 DUF3366: Domain of un 52.9 58 0.0013 29.1 7.2 37 522-558 139-175 (193)
408 KOG2063 Vacuolar assembly/sort 52.6 3.3E+02 0.0071 30.8 13.7 28 562-589 685-712 (877)
409 PF11846 DUF3366: Domain of un 52.3 51 0.0011 29.4 6.7 31 491-521 140-170 (193)
410 PF10366 Vps39_1: Vacuolar sor 52.2 75 0.0016 25.2 6.7 27 325-351 41-67 (108)
411 PF11838 ERAP1_C: ERAP1-like C 52.0 2.4E+02 0.0052 27.6 17.7 110 475-585 146-261 (324)
412 COG1747 Uncharacterized N-term 50.8 3.1E+02 0.0067 28.5 22.9 159 357-521 65-231 (711)
413 KOG4507 Uncharacterized conser 50.8 86 0.0019 32.8 8.3 133 456-591 568-706 (886)
414 PF04190 DUF410: Protein of un 50.7 2.2E+02 0.0049 26.9 18.8 158 304-488 2-170 (260)
415 COG2912 Uncharacterized conser 50.6 1.3E+02 0.0028 28.3 8.9 58 533-590 187-244 (269)
416 KOG4814 Uncharacterized conser 50.2 1.9E+02 0.0042 30.8 10.7 85 505-589 364-456 (872)
417 COG5191 Uncharacterized conser 48.7 35 0.00076 32.4 4.9 79 491-569 103-184 (435)
418 PF10255 Paf67: RNA polymerase 48.3 3.1E+02 0.0068 27.8 11.9 58 90-147 123-191 (404)
419 COG4976 Predicted methyltransf 47.7 37 0.0008 30.8 4.7 57 505-561 5-63 (287)
420 PF13934 ELYS: Nuclear pore co 47.4 2.3E+02 0.005 26.1 12.8 69 465-538 114-183 (226)
421 PF12862 Apc5: Anaphase-promot 46.8 79 0.0017 24.2 6.1 24 533-556 47-70 (94)
422 COG5159 RPN6 26S proteasome re 45.5 2.8E+02 0.006 26.4 13.6 54 430-483 9-69 (421)
423 PF10255 Paf67: RNA polymerase 45.4 1.2E+02 0.0027 30.6 8.5 27 561-587 164-190 (404)
424 KOG2063 Vacuolar assembly/sort 45.3 5.1E+02 0.011 29.4 18.9 131 223-369 505-637 (877)
425 KOG0687 26S proteasome regulat 44.9 3E+02 0.0066 26.7 12.8 25 462-486 107-131 (393)
426 COG5159 RPN6 26S proteasome re 44.6 2.8E+02 0.0062 26.3 18.1 32 229-260 10-41 (421)
427 PRK10564 maltose regulon perip 44.4 38 0.00083 32.3 4.6 41 122-163 259-299 (303)
428 PF11768 DUF3312: Protein of u 43.9 3.5E+02 0.0076 28.5 11.5 24 397-420 412-435 (545)
429 PF08424 NRDE-2: NRDE-2, neces 43.3 3.3E+02 0.0072 26.7 15.5 115 440-557 47-184 (321)
430 PF08043 Xin: Xin repeat; Int 43.1 7.6 0.00017 18.5 -0.1 12 2-13 5-16 (16)
431 KOG0292 Vesicle coat complex C 43.0 36 0.00079 37.2 4.6 75 465-555 626-700 (1202)
432 PRK10564 maltose regulon perip 42.9 39 0.00084 32.2 4.4 38 224-261 259-296 (303)
433 KOG4567 GTPase-activating prot 42.7 2.8E+02 0.0061 26.7 9.7 44 343-386 263-306 (370)
434 smart00777 Mad3_BUB1_I Mad3/BU 42.3 1.8E+02 0.004 23.8 7.6 40 546-585 82-123 (125)
435 KOG2297 Predicted translation 42.0 3.3E+02 0.0071 26.3 11.7 18 426-443 323-340 (412)
436 KOG0686 COP9 signalosome, subu 41.1 3.9E+02 0.0085 26.9 13.4 58 294-351 152-215 (466)
437 KOG4642 Chaperone-dependent E3 41.1 2.9E+02 0.0064 25.6 9.2 118 402-521 19-143 (284)
438 cd00280 TRFH Telomeric Repeat 40.9 1.6E+02 0.0034 26.0 7.2 73 511-584 85-167 (200)
439 PF11848 DUF3368: Domain of un 40.6 1E+02 0.0022 20.1 5.3 33 435-467 13-45 (48)
440 KOG3824 Huntingtin interacting 40.3 46 0.001 31.6 4.4 55 507-561 128-184 (472)
441 PF04190 DUF410: Protein of un 39.9 3.3E+02 0.0072 25.7 18.2 83 189-286 88-170 (260)
442 PF09454 Vps23_core: Vps23 cor 38.9 87 0.0019 22.1 4.6 49 422-471 6-54 (65)
443 PF07720 TPR_3: Tetratricopept 38.8 90 0.0019 18.9 4.7 16 534-549 8-23 (36)
444 PRK09857 putative transposase; 38.6 1.7E+02 0.0037 28.3 8.2 66 530-595 209-274 (292)
445 KOG2659 LisH motif-containing 38.5 3.2E+02 0.0068 25.1 9.9 97 455-554 22-130 (228)
446 PF14689 SPOB_a: Sensor_kinase 38.3 52 0.0011 22.9 3.5 25 565-589 27-51 (62)
447 PF10345 Cohesin_load: Cohesin 38.2 5.7E+02 0.012 27.9 31.7 50 470-519 372-428 (608)
448 PF11817 Foie-gras_1: Foie gra 37.4 1.8E+02 0.004 27.2 8.2 51 534-584 185-241 (247)
449 KOG2297 Predicted translation 37.4 3.9E+02 0.0084 25.8 12.7 19 325-343 323-341 (412)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 37.3 2.3E+02 0.005 23.2 8.4 43 138-180 81-123 (126)
451 KOG4567 GTPase-activating prot 37.3 3.1E+02 0.0067 26.4 9.1 43 243-285 264-306 (370)
452 PF07575 Nucleopor_Nup85: Nup8 36.9 1.5E+02 0.0033 31.9 8.5 243 108-368 286-540 (566)
453 PF11848 DUF3368: Domain of un 36.6 1.2E+02 0.0026 19.7 5.3 33 334-366 13-45 (48)
454 KOG2471 TPR repeat-containing 36.0 5.2E+02 0.011 26.8 15.1 211 370-587 29-266 (696)
455 PF08424 NRDE-2: NRDE-2, neces 36.0 4.3E+02 0.0094 25.9 16.0 117 475-593 47-186 (321)
456 KOG4521 Nuclear pore complex, 35.6 7.8E+02 0.017 28.8 14.5 120 462-583 986-1124(1480)
457 COG0735 Fur Fe2+/Zn2+ uptake r 35.5 1.8E+02 0.0039 24.6 7.0 62 142-205 8-69 (145)
458 PF10516 SHNi-TPR: SHNi-TPR; 35.2 88 0.0019 19.2 3.7 28 562-589 2-29 (38)
459 PF04762 IKI3: IKI3 family; I 35.1 7.7E+02 0.017 28.6 13.8 26 396-421 815-842 (928)
460 TIGR02270 conserved hypothetic 34.8 5.2E+02 0.011 26.5 24.9 99 127-234 45-143 (410)
461 PF14561 TPR_20: Tetratricopep 34.8 2E+02 0.0044 21.8 7.6 53 526-578 21-75 (90)
462 PF14689 SPOB_a: Sensor_kinase 34.7 42 0.00092 23.3 2.6 28 494-521 22-49 (62)
463 PF12926 MOZART2: Mitotic-spin 34.6 2E+02 0.0043 21.6 7.5 41 379-419 29-69 (88)
464 PF14044 NETI: NETI protein 34.4 27 0.00059 23.5 1.4 19 626-644 9-27 (57)
465 KOG2396 HAT (Half-A-TPR) repea 34.3 5.6E+02 0.012 26.7 36.6 69 86-156 102-174 (568)
466 KOG1114 Tripeptidyl peptidase 34.1 7.5E+02 0.016 28.2 14.4 71 441-511 1213-1283(1304)
467 KOG2422 Uncharacterized conser 33.6 6.1E+02 0.013 27.0 16.5 56 431-486 349-405 (665)
468 PF11817 Foie-gras_1: Foie gra 33.6 1.2E+02 0.0027 28.4 6.3 16 470-485 189-204 (247)
469 PF11768 DUF3312: Protein of u 33.2 2.2E+02 0.0048 29.9 8.2 56 195-250 412-472 (545)
470 PF09477 Type_III_YscG: Bacter 33.0 2.5E+02 0.0054 22.3 10.9 88 371-462 19-106 (116)
471 PF13929 mRNA_stabil: mRNA sta 32.7 4.5E+02 0.0098 25.2 18.6 67 455-521 198-264 (292)
472 KOG0376 Serine-threonine phosp 32.4 99 0.0021 31.6 5.6 104 431-539 11-117 (476)
473 PF14669 Asp_Glu_race_2: Putat 32.3 3.7E+02 0.0079 24.0 12.6 55 531-585 136-205 (233)
474 PRK13800 putative oxidoreducta 32.2 8.5E+02 0.018 28.2 28.9 183 290-487 696-880 (897)
475 PF08967 DUF1884: Domain of un 32.0 55 0.0012 24.0 2.7 22 621-642 8-29 (85)
476 PF11663 Toxin_YhaV: Toxin wit 31.8 72 0.0016 26.3 3.7 33 232-266 105-137 (140)
477 TIGR02328 conserved hypothetic 31.5 54 0.0012 25.8 2.8 24 622-645 49-72 (120)
478 KOG4279 Serine/threonine prote 31.4 1.2E+02 0.0026 32.9 6.1 26 427-452 204-229 (1226)
479 COG5108 RPO41 Mitochondrial DN 30.9 2.1E+02 0.0045 30.7 7.6 69 196-267 33-113 (1117)
480 KOG2300 Uncharacterized conser 30.9 6.3E+02 0.014 26.3 28.6 83 235-317 60-152 (629)
481 PF04090 RNA_pol_I_TF: RNA pol 30.5 4E+02 0.0087 23.9 9.7 61 424-485 41-102 (199)
482 KOG0991 Replication factor C, 29.8 4.6E+02 0.0099 24.3 12.1 138 298-459 136-273 (333)
483 COG0735 Fur Fe2+/Zn2+ uptake r 29.8 2.5E+02 0.0054 23.7 6.9 61 245-306 9-69 (145)
484 PF12796 Ank_2: Ankyrin repeat 29.6 1.6E+02 0.0035 21.8 5.4 13 203-215 6-18 (89)
485 PF09670 Cas_Cas02710: CRISPR- 29.0 6.2E+02 0.013 25.6 12.5 55 332-387 140-198 (379)
486 PF11663 Toxin_YhaV: Toxin wit 28.5 62 0.0013 26.6 2.8 32 436-469 107-138 (140)
487 PF04762 IKI3: IKI3 family; I 27.7 1E+03 0.022 27.7 13.2 25 296-320 816-842 (928)
488 PF06957 COPI_C: Coatomer (COP 27.6 2.9E+02 0.0063 28.2 7.9 43 518-560 289-333 (422)
489 KOG0889 Histone acetyltransfer 27.6 1.7E+03 0.036 30.2 24.1 25 327-351 2636-2660(3550)
490 KOG0508 Ankyrin repeat protein 27.5 7E+02 0.015 25.8 10.3 33 346-378 166-200 (615)
491 PRK13800 putative oxidoreducta 27.1 1E+03 0.022 27.5 27.0 255 313-589 625-880 (897)
492 PF04781 DUF627: Protein of un 27.0 3.3E+02 0.0071 21.8 7.0 40 546-585 63-102 (111)
493 PF09986 DUF2225: Uncharacteri 26.7 4.8E+02 0.01 23.8 8.7 15 462-476 121-135 (214)
494 PF10264 Stork_head: Winged he 26.3 2.7E+02 0.0057 20.7 5.4 55 43-104 12-66 (80)
495 PF04034 DUF367: Domain of unk 26.2 3.7E+02 0.0079 22.1 7.5 56 496-551 67-123 (127)
496 KOG1308 Hsp70-interacting prot 26.2 79 0.0017 30.7 3.5 118 470-590 125-244 (377)
497 KOG0292 Vesicle coat complex C 26.0 8.5E+02 0.018 27.6 11.2 130 402-555 652-781 (1202)
498 KOG2908 26S proteasome regulat 25.7 5.6E+02 0.012 25.2 8.9 87 328-414 80-178 (380)
499 COG4259 Uncharacterized protei 25.6 3.1E+02 0.0067 21.3 5.8 29 533-561 78-106 (121)
500 PF00356 LacI: Bacterial regul 25.3 73 0.0016 20.6 2.3 16 627-642 31-46 (46)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-94 Score=796.34 Aligned_cols=631 Identities=33% Similarity=0.580 Sum_probs=619.2
Q ss_pred chhhhccc-cCCcchhHhhHhHHhhccccCCC------ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcC
Q 037816 3 SKWVFLKL-NSNFPFCSSLVSPFITKIIQDPT------SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE 75 (648)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 75 (648)
++++|+.+ ++|+.+||+|+++|++.|..+++ |...|++| |..+|+.++++|+..+++..+.+++..+.+.
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-- 216 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRF-- 216 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHc--
Confidence 67889999 78999999999999999888777 57789999 9999999999999999999999999999999
Q ss_pred CCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816 76 PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155 (648)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 155 (648)
|+ .||..+||.||.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.|+.
T Consensus 217 g~--------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 217 GF--------ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred CC--------CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHC
Q 037816 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235 (648)
Q Consensus 156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 235 (648)
. ||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+||.+|.+|++.
T Consensus 289 ~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 289 M-TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred h-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315 (648)
Q Consensus 236 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 315 (648)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395 (648)
Q Consensus 316 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 395 (648)
++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..+
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999986 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (648)
+++|+++|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999999667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816 556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635 (648)
Q Consensus 556 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 635 (648)
+.|++...|..++++|...|+|++|.++.+.|++.|+++++|+||+++...++.|..++..||...+||.++.++..+|+
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccCCCCCC
Q 037816 636 DEGYVPNKRFIL 647 (648)
Q Consensus 636 ~~g~~p~~~~~~ 647 (648)
+.||+||+.+++
T Consensus 766 ~~g~~~~~~~~~ 777 (857)
T PLN03077 766 ASGLAGSESSSM 777 (857)
T ss_pred hCCcCCCcchhc
Confidence 999999988765
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-78 Score=659.66 Aligned_cols=531 Identities=36% Similarity=0.616 Sum_probs=521.2
Q ss_pred CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 037816 117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195 (648)
Q Consensus 117 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (648)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ ..|+.. +|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4577799999999999999999999999999865 678888 99999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHH
Q 037816 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE 275 (648)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 275 (648)
.|+.+|++.|+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816 276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355 (648)
Q Consensus 276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 355 (648)
+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.|..+|+++||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 037816 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435 (648)
Q Consensus 356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 435 (648)
||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (648)
+.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595 (648)
Q Consensus 516 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 595 (648)
+++++|++.|+..+|++|+.+|..+|+++.|..+++++.+..|++..+|..++++|++.|++++|.++++.|.+.|+.+.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCCCCC
Q 037816 596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648 (648)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ 648 (648)
+|++|+.+...++.|..++..||...+|+.++.++..+|.+.||+||+.+++|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~ 615 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence 99999999999999999999999999999999999999999999999998764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.3e-78 Score=670.53 Aligned_cols=570 Identities=26% Similarity=0.414 Sum_probs=534.5
Q ss_pred cCCcchhHhhHhHHhhccccCCC------ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCC
Q 037816 11 NSNFPFCSSLVSPFITKIIQDPT------SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN 84 (648)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (648)
+++..++|.++++|++.|...++ |+..|+.| +..+|..++.+|.+.+.+..|.+++..+.+. +.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~------- 117 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HP------- 117 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CC-------
Confidence 56788999999999999988877 58889999 9999999999999999999999999999999 88
Q ss_pred CCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816 85 VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164 (648)
Q Consensus 85 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~ 164 (648)
.++..++|.|+..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.|+.. ||+.+++
T Consensus 118 -~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~-t~~~ll~ 195 (857)
T PLN03077 118 -SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY-TFPCVLR 195 (857)
T ss_pred -CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH
Q 037816 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
+|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+.+|..+||++|.+|++.|++++|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l 275 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 037816 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324 (648)
Q Consensus 245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 324 (648)
|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~ 355 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 484 (648)
+.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999986 5899999999999999999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCCcc
Q 037816 485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ-PDSPAP 563 (648)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 563 (648)
+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|++++.+|++.|+.++|+++|++|.+.+ .+|..+
T Consensus 515 ~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T 591 (857)
T PLN03077 515 VLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591 (857)
T ss_pred HHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence 9886 88888888888888888888888887777777 6777777777777777777777777777776543 445677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCC
Q 037816 564 YILMANIYSCSGRWKERAKAIKRMK-EMGVDKET 596 (648)
Q Consensus 564 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~ 596 (648)
|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 7777777777777777777777777 56666654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-65 Score=555.94 Aligned_cols=530 Identities=15% Similarity=0.176 Sum_probs=382.1
Q ss_pred CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCccc
Q 037816 43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS 122 (648)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 122 (648)
+...|..++..|++.|++++|.++|++|.+. ++ ++++..+++.++..|.+.|.+++|..+|+.|..||..+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~--gv-------v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~T 439 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR--GL-------LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST 439 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhC--CC-------CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence 5566777777888888888888888888777 53 15677777778888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202 (648)
Q Consensus 123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (648)
|+.+|.+|++.|+++.|.++|++|.+.|+.|+.. +|+.++.+|++.|+.+.|..+++.|.+.|+.||..+|+.+|.+|+
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888777777 777777777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHhcccC----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHh--CCCCCChhhHHHHHHHhhccCChHHH
Q 037816 203 KCGSSSSGRKVFGEMR----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEG 276 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a 276 (648)
+.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777774 46777777777777777777777777777754 46677777777777777777777777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037816 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352 (648)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 352 (648)
.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777766666666653 46666666666666666666666666666666
Q ss_pred CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHH
Q 037816 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWN 428 (648)
Q Consensus 353 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 428 (648)
|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666664 35666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|. +.++++..+.+.+.. +. + .......
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-f~--~--------g~~~~~n 825 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-FD--S--------GRPQIEN 825 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-hh--c--------ccccccc
Confidence 666666666666666666666666666666666666665443 234444444333322 00 0 0111112
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816 509 GLLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 509 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
+..++|..+|++| ++.||..||+.++.+++..+..+.+..+++.+. ...+++..+|+.+++++.+. .++|..++
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~ 903 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLL 903 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence 3456799999999 899999999999988888899999888888764 34567788999999988332 36899999
Q ss_pred HHHHhCCCCCCCc
Q 037816 585 KRMKEMGVDKETG 597 (648)
Q Consensus 585 ~~m~~~~~~~~~~ 597 (648)
++|.+.|+.|+..
T Consensus 904 ~em~~~Gi~p~~~ 916 (1060)
T PLN03218 904 EEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHcCCCCCcc
Confidence 9999999999874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-65 Score=555.42 Aligned_cols=469 Identities=20% Similarity=0.323 Sum_probs=450.2
Q ss_pred cCCcchhHhhHhHHhhccccCCC------ccC-CCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcC
Q 037816 11 NSNFPFCSSLVSPFITKIIQDPT------SST-SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY 83 (648)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~------~~~-~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (648)
..+..+|++++++|++.|++.++ |+. .+..| |..+|+.++.+|++.++++.|.+++..+.+. |+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~------ 154 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESS--GF------ 154 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC------
Confidence 34566999999999999888777 344 35788 9999999999999999999999999999999 99
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816 84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163 (648)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll 163 (648)
.||..+||.|+.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+.. +|..++
T Consensus 155 --~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-t~~~ll 231 (697)
T PLN03081 155 --EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVML 231 (697)
T ss_pred --CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh-hHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHH
Q 037816 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK 243 (648)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 243 (648)
.+|...+..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|..+|+.+||.||.+|++.|++++|++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 037816 244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG 323 (648)
Q Consensus 244 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 323 (648)
+|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 037816 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLINM 402 (648)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 402 (648)
.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 6999999999999999
Q ss_pred HHhCCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 037816 403 YSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGME 480 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~ 480 (648)
|++.|++++|.++++++. .|+..+|++|+.+|...|+++.|..+++++.+ +.| +..+|..+++.|++.|++++|.+
T Consensus 472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 999999999999999996 68999999999999999999999999999976 446 46799999999999999999999
Q ss_pred HHHHhHHhcCCCCC
Q 037816 481 FLKSMTEVHRISPR 494 (648)
Q Consensus 481 ~~~~~~~~~~~~~~ 494 (648)
+++.|.+. |+...
T Consensus 550 v~~~m~~~-g~~k~ 562 (697)
T PLN03081 550 VVETLKRK-GLSMH 562 (697)
T ss_pred HHHHHHHc-CCccC
Confidence 99999986 87643
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-62 Score=534.01 Aligned_cols=532 Identities=17% Similarity=0.194 Sum_probs=472.7
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC-----cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhH
Q 037816 84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD-----TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158 (648)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 158 (648)
...++...|..++..|++.|++++|+++|++|..++ ..+++.++.+|.+.|..++|+.+|+.|.. |+.. +
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~-T 439 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS-T 439 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH-H
Confidence 345677889999999999999999999999998554 45667788889999999999999999974 8888 9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC----CCCcccHHHHHHHHHH
Q 037816 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR----VRNVITWTAVISGLVQ 234 (648)
Q Consensus 159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~ 234 (648)
|+.++.+|++.|+++.|..+++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5899999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCHHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVEDAW 312 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~ 312 (648)
.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 678999999999999999999999999
Q ss_pred HHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816 313 QIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388 (648)
Q Consensus 313 ~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 388 (648)
++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999986 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464 (648)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 464 (648)
+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCh
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDS 543 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~ 543 (648)
++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|. +++++|.++.+.+ .+.+ .......+..
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--------g~~~~~n~w~ 828 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--------GRPQIENKWT 828 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc--------cccccccchH
Confidence 999999999999999999999996 99999999999997654 2466666554433 1110 0111122334
Q ss_pred HHHHHHHHHHHhcC-CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHH
Q 037816 544 EMGKYAAEKLFLAQ-PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT 622 (648)
Q Consensus 544 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (648)
+.|..+|++|.+.+ .++..+|..++.++.+.+..+.+..+++.|...+..|+...+..+++.. +..
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--------~~~----- 895 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--------GEY----- 895 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--------ccC-----
Confidence 67999999998755 5677899999998889999999999999998887777665554444321 111
Q ss_pred HHHHHHHHHHHHHhcCcccCCCC
Q 037816 623 IHGVLAELLRLMIDEGYVPNKRF 645 (648)
Q Consensus 623 ~~~~~~~~~~~m~~~g~~p~~~~ 645 (648)
.+.+-.++++|.+.|+.|+-+|
T Consensus 896 -~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 896 -DPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred -hHHHHHHHHHHHHcCCCCCccc
Confidence 1335599999999999999764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-34 Score=326.71 Aligned_cols=556 Identities=12% Similarity=0.024 Sum_probs=362.0
Q ss_pred cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCC
Q 037816 11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86 (648)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 86 (648)
|.+..++..+...+...|+...+. +.....|+++..+..+...+.+.|++++|...++.+.+. . +
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~ 394 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--D---------P 394 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C---------C
Confidence 555555666666666665555543 222333445555666666666666666666666666554 1 3
Q ss_pred ChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816 87 NATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163 (648)
Q Consensus 87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll 163 (648)
.+...+..+...+...|++++|.+.|+.+.. .+......++..+.+.|++++|+.+++++.... |+...++..+.
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 472 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLG 472 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 3455556666666666666666666665542 123344555666666677777777776666543 43333666666
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchH
Q 037816 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEE 240 (648)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 240 (648)
..+...|+.+.|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. .+..++..+...+.+.|++++
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 66777777777777777666544 34455566666667777777777777766642 244566666677777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037816 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320 (648)
Q Consensus 241 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 320 (648)
|..+++++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+...|..+..+|...|++++|...|+.+.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777765532 2344455666667777777777777777766543 44556677777777777777777777776643
Q ss_pred ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH
Q 037816 321 ---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397 (648)
Q Consensus 321 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 397 (648)
.+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.+ +.+...+.
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 244456666677777777777777777776643 3446666777777777777777777777776654 45556666
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816 398 GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475 (648)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (648)
.+...+...|++++|...|..+. .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 67777777777777777777664 2444556666777777777777777777777653 34566666777777777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKL 553 (648)
Q Consensus 476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 553 (648)
++|.+.|+++.+. .++++.++..+...+...|+ .+|++.++++ ...| ++.++..+...+...|++++|..+++++
T Consensus 787 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777663 34566677777777777777 6677777766 3333 3455666667777777777777777777
Q ss_pred HhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 554 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.3e-33 Score=318.71 Aligned_cols=555 Identities=12% Similarity=0.036 Sum_probs=417.9
Q ss_pred chhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHH
Q 037816 15 PFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV 90 (648)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (648)
..+..+...|...|+.+.+. +.-...|++...+..+...+.+.|++++|...++.+.+. . +.+..
T Consensus 296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~ 364 (899)
T TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--D---------PDDPA 364 (899)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C---------CCCHH
Confidence 33333444444444444442 112233444555566666666677777777776666555 1 34566
Q ss_pred HHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816 91 IWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167 (648)
Q Consensus 91 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~ 167 (648)
++..+...+.+.|++++|.+.|+.+.+ .+...+..+...+...|++++|.+.|+.+.+.. |+.......++..+.
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYL 442 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHH
Confidence 666677777777777777777776542 244556666666777777777777777776654 333335555666677
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHH
Q 037816 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
..|+.+.|..+++.+.+.. +++..++..+...+...|++++|.+.|+++.. .+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777777776643 55667778888888888888888888877642 2445566777778888888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 037816 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---L 321 (648)
Q Consensus 245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 321 (648)
|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 88886643 2355667777777888888888888888887664 44556677788888888888888888888764 3
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 401 (648)
+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 55678888888888889999998888887764 4456677788888888889999998888888754 556778888888
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 037816 402 MYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 478 (648)
.+...|++++|.++++.+.. .+...+..+...+...|++++|...++++...+ |+..++..+..++...|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 88889999999888888763 356677888888899999999999999988854 6667777888889999999999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
.+.++++.+. .+.+...+..+...|...|++++|.+.|+++ ..++++..+..+...+...|+ ++|+..++++++.
T Consensus 756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 9999999873 4567888999999999999999999999988 334467888999999999999 8899999999999
Q ss_pred CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 557 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
.|+++..+..++.++...|++++|.++++++.+.+.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999988664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.4e-24 Score=247.94 Aligned_cols=560 Identities=11% Similarity=0.036 Sum_probs=399.7
Q ss_pred cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchH----------------HHHHHHHhccCCCcchhHHHHHH
Q 037816 11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDI----------------SRLLSISAKEGHFHLGPSLHASF 70 (648)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~~ 70 (648)
|.|+..+..+...+.+.|+.+.+. +...+.|+++... ......+.+.|++++|...++.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 889999999999999999988885 5557777444432 33344688899999999999999
Q ss_pred hhhcCCCCCcCcCCCCChHHHH-HHHHHHHhcCCChhHHHHhhccCCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHH
Q 037816 71 IKTFEPFDNQNVYNVPNATVIW-NSLLSFYLKCDQMRNAVKLFDDMPM--R-DTVSWNTMVSGFLRNGEFDMGFGFFKRS 146 (648)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~y~~li~~~~~~g~~~~A~~~~~~m 146 (648)
.+. - +|+...- ..+.......|+.++|++.|+.+.+ | +...+..+...+...|++++|+..|+++
T Consensus 139 l~~---~--------p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 139 FNG---A--------PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred ccC---C--------CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 876 2 4443321 1222223346999999999999883 3 5667888889999999999999999988
Q ss_pred HHcCC------------------CCCcHhHHHH----------------------------------HHHHhhccCChHH
Q 037816 147 LELGF------------------YQLDQASFTI----------------------------------ILSACDRSELSLV 174 (648)
Q Consensus 147 ~~~~~------------------~p~~~~~~~~----------------------------------ll~~~~~~~~~~~ 174 (648)
.+... .+.....+.. ....+...|++++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 65321 0000000110 1122445677777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCc---ccHH------------HHHHHHHHCCC
Q 037816 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNV---ITWT------------AVISGLVQNQL 237 (648)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~g~ 237 (648)
|...++..++.. +.+...+..+..+|.+.|++++|+..|++..+ |+. ..|. .....+.+.|+
T Consensus 288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 777777777654 44566777777777777777777777776653 221 1111 11334566777
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816 238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317 (648)
Q Consensus 238 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 317 (648)
+++|+..|++..+.. +.+...+..+...+...|++++|++.++.+.+.. +.+...+..+...|. .++.++|..+++.
T Consensus 367 ~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~ 443 (1157)
T PRK11447 367 LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIAS 443 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence 777777777776632 1234455566667777777777777777777653 333445555555553 3466777777766
Q ss_pred ccCCC------------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816 318 AEELD------------GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385 (648)
Q Consensus 318 ~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 385 (648)
+.... ...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54321 1223445566778899999999999988764 3356667778888999999999999999988
Q ss_pred HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR----NS---------VSWNSMIAAFARHGNGFKALELYEEMKL 452 (648)
Q Consensus 386 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 452 (648)
+.. +.++..+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|..+++.
T Consensus 523 ~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 523 QQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 654 445555555666677889999999999887632 11 1123456678889999999998872
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 037816 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVW 530 (648)
Q Consensus 453 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 530 (648)
.+++...+..+...+.+.|++++|+..|+++.+. -+.+...+..++..|...|++++|++.++.. ...|+ ...+
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~ 674 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ 674 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence 3456667778889999999999999999999873 3447889999999999999999999999988 44554 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------cHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC
Q 037816 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPA------PYILMANIYSCSGRWKERAKAIKRMKE-MGVDK 594 (648)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 594 (648)
..+..++...|++++|.++++++++..|+++. ++..++.++...|++++|++.|++... .|+.|
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 77888899999999999999999988766543 666779999999999999999999854 34443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.6e-24 Score=242.40 Aligned_cols=550 Identities=10% Similarity=0.008 Sum_probs=356.9
Q ss_pred hhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH-HHH-
Q 037816 19 SLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT-VIW- 92 (648)
Q Consensus 19 ~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 92 (648)
...+.+...++++-+. +...+.|+|+..+......+.+.|+.++|...++.+.+. .|+. ...
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~------------~P~~~~~~~ 100 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL------------APDSNAYRS 100 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCChHHHH
Confidence 3344566666666654 667889999999999999999999999999999999988 3433 222
Q ss_pred ---------------HHHHHHHhcCCChhHHHHhhccCCCCCcccHH----HHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 037816 93 ---------------NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN----TMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153 (648)
Q Consensus 93 ---------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p 153 (648)
..+...+.+.|++++|+..|+.+.+.+..... .........|+.++|+..|+++.+.. |
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P 178 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--P 178 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--C
Confidence 33445688999999999999998743222211 11112234599999999999999875 7
Q ss_pred CcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCC----------------CCh---hHHH-------------------
Q 037816 154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE----------------EEV---TVGN------------------- 195 (648)
Q Consensus 154 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~---~~~~------------------- 195 (648)
+....+..+...+...|+.++|...++.+.+.... ++. ..+.
T Consensus 179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L 258 (1157)
T PRK11447 179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL 258 (1157)
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence 77768888899999999999999999887653210 000 0011
Q ss_pred ---------------HHHHHhHhcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC-C
Q 037816 196 ---------------ALITSYFKCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP-N 256 (648)
Q Consensus 196 ---------------~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~ 256 (648)
.....+...|++++|+..|++... | +...+..+...+.+.|++++|+..|++..+..... .
T Consensus 259 ~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 259 AEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 112233445666666666655542 2 34455555666666666666666666655432111 1
Q ss_pred hhhH------------HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 037816 257 SLTY------------LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--- 321 (648)
Q Consensus 257 ~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 321 (648)
...+ ......+...|++++|...++.+.+.. +.+...+..+..++...|++++|++.|+++.+.
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 0111 111223445566666666666665543 233444555566666666666666666655542
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE--------IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 393 (648)
+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|.+.+++..+.. +.++
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 2223333444442 34556666555543221100 001123334455566777777777777777654 4455
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------H
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV---------T 461 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~ 461 (648)
..+..+...|.+.|++++|...++++. +.+...+..+...+...++.++|+..++.+......++.. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 666677777777777777777777653 2244444444455566777777777777654322222211 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI 539 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 539 (648)
+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 22345567778888888887761 2446677788999999999999999999988 4455 47788889999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
.|++++|++.++++.+..|+++.++..++.++...|++++|.++++++....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999999999999999999999999999999999999999999999988754
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=7.7e-21 Score=207.33 Aligned_cols=540 Identities=11% Similarity=0.056 Sum_probs=339.1
Q ss_pred cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCC
Q 037816 11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP 86 (648)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 86 (648)
|.|..++..|.+.|.+.|++.++. +.....|+|.. |..++... ++.++|..+++++.+. . |
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~-~~~~La~i---~~~~kA~~~ye~l~~~---~--------P 139 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR-LERSLAAI---PVEVKSVTTVEELLAQ---Q--------K 139 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH-HHHHHHHh---ccChhHHHHHHHHHHh---C--------C
Confidence 999999999999999999999986 55577774444 44444333 8999999999999999 2 3
Q ss_pred ChHHHHHHHHHH--------HhcCCChhHHHHhhccCCCCC--cccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816 87 NATVIWNSLLSF--------YLKCDQMRNAVKLFDDMPMRD--TVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLD 155 (648)
Q Consensus 87 ~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 155 (648)
-+..++..+... |.+.+....+++ .....|+ ....... ...|.+.|++++|+..+.++.+.+ |..
T Consensus 140 ~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~ 215 (987)
T PRK09782 140 ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLS 215 (987)
T ss_pred CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCC
Confidence 446677666666 787777777777 3333343 4433444 889999999999999999999987 555
Q ss_pred HhHHHHHHHHhhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC-----CCcccH----
Q 037816 156 QASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-----RNVITW---- 225 (648)
Q Consensus 156 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~---- 225 (648)
......+-.++.. .++ +.+..++.. .+..+...+..+...|.+.|+.++|.+++++++. |+..+|
T Consensus 216 ~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 216 AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 5356666667766 355 666666442 3346888999999999999999999999998862 211111
Q ss_pred --------------------------HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHh--hccCChHHHH
Q 037816 226 --------------------------TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC--SGLQALCEGR 277 (648)
Q Consensus 226 --------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~ 277 (648)
-.++..+.+.++++.+.++. ++.|..... .++.. ...+...++.
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKAEAL 362 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchhHHH
Confidence 11245556666666555442 133433321 22222 2234555555
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-C-Ccc----cHHHHHHHHHHcCC---HHHHHHH---
Q 037816 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-L-DGV----SMTVILVGFAQNGF---EEEAMQL--- 345 (648)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~----~~~~li~~~~~~~~---~~~a~~~--- 345 (648)
+.+..|.+.. +-+....--+.-...+.|+.++|.++|+..-. + +.. .-.-++..|.+.+. ..++..+
T Consensus 363 ~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 5565555542 22333333334445566777777777766654 1 111 12234444544443 2222222
Q ss_pred -------------------HHHHHHc-CC-Cc--CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037816 346 -------------------FVKMVKA-GI-EI--DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402 (648)
Q Consensus 346 -------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 402 (648)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 1111111 11 22 44455555555544 66667777666655443 443333334444
Q ss_pred HHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816 403 YSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 480 (648)
+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.+ +++...+..+...+...|++++|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 5577777777777776542 333445555666777777777777777777654 2222233333334445577777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 558 (648)
.+++..+. .|+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++..|
T Consensus 598 ~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777653 456667777777777777777777777776 44554 55566666677777777777777777777777
Q ss_pred CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 559 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++.++..++.++...|++++|+..+++..+.
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.8e-19 Score=196.65 Aligned_cols=256 Identities=11% Similarity=0.065 Sum_probs=191.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-C-CCcCHHHHHHHHHHHhccCC---hhHHHHH----------------------HHH
Q 037816 331 VGFAQNGFEEEAMQLFVKMVKA-G-IEIDPNMVSAVLGVFGVDTS---LGLGKQI----------------------HSL 383 (648)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~ 383 (648)
-...+.|+.++|.++|+..... + ..++.....-++..+.+.+. ..++..+ +..
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 3456789999999999988762 1 23344444466777766655 2222222 111
Q ss_pred HHH-hCC-CC--chhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816 384 IIK-SDF-TS--NPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457 (648)
Q Consensus 384 ~~~-~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 457 (648)
... .+. ++ +...+..+..++.. ++.++|...+.+.. .|+......+...+...|++++|...|+++... +|
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 111 111 34 66778888888876 88888999777665 344333333444556899999999999998663 45
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGA 536 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 536 (648)
+...+..+..++.+.|++++|...+++..+. . +++...+..+...+.+.|++++|...+++. ...|+...+..+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~ 618 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATI 618 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5566667778889999999999999999874 2 334444444445555679999999999998 777888889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
+.+.|++++|+..++++++.+|+++..+..++.++...|++++|++.+++..+..
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999998853
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=8.9e-21 Score=183.46 Aligned_cols=444 Identities=12% Similarity=0.095 Sum_probs=354.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202 (648)
Q Consensus 123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (648)
...|..-..+.|++++|++.....-+.+ |+.......+-..+....+.+.....-....+.. +--..+|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 4556666778899999998877665554 4444244444444556666665554444444322 334578899999999
Q ss_pred hcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHH-HhhccCChHHHHH
Q 037816 203 KCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM-ACSGLQALCEGRQ 278 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~ 278 (648)
..|+++.|+.+++.+.+ | .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .+...|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998864 3 567899999999999999999999998876 5577665544333 3455788999998
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355 (648)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 355 (648)
.+.+..+.. +-=...|+.|...+-.+|++..|+..|++...-|+. .|-.|...|...+.++.|+..|.+..... +
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 888877653 233557888999999999999999999999875543 57778888999999999999998887653 3
Q ss_pred cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 037816 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIA 432 (648)
Q Consensus 356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 432 (648)
.....+..+...|...|.++.|+..+++..... +.-+..|+.|..++-..|++.+|.+.|.+... .-..+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 345677777778889999999999999998764 44467899999999999999999999998763 34567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCC
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGL 510 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 510 (648)
.|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..|++..+ +.| -...|+.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5565 45788899999999999999999999974 677 46789999999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHH
Q 037816 511 LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 579 (648)
.+.|++.+.+. .+.|. ...++.|...|...|+..+|++.|+.++++.|+.+.+|..++.++---.+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999988 77776 56788999999999999999999999999999999999999887665544443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=8e-21 Score=183.77 Aligned_cols=421 Identities=14% Similarity=0.089 Sum_probs=340.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHC
Q 037816 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQN 235 (648)
Q Consensus 159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 235 (648)
...|.....+.|++.+|++.-..+-..+ +.+....-.+-..+....+.++...--....+ .-..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3445555566778888877766654433 22222333333445555565554433222222 2456899999999999
Q ss_pred CCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 037816 236 QLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC-IESALMDMYSKCGSVEDAWQ 313 (648)
Q Consensus 236 g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~ 313 (648)
|++++|+.+++.+.+ ++| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+.+....-..|++++|..
T Consensus 130 g~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999987 345 45679999999999999999999999888754 4433 33445555666799999999
Q ss_pred HHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 037816 314 IFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389 (648)
Q Consensus 314 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 389 (648)
.|.+..+. =.+.|+.|...+-.+|+...|++.|++.... .|+ ...|..|-..+...+.++.|...+.......
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 99887663 3467999999999999999999999999875 344 5678888888999999999999988877654
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN-SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSL 465 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 465 (648)
+....++..+...|-..|.++-|+..|++..+ |+ ...|+.|..++-..|+..+|...|.+.... .|+ ....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 45567788888889999999999999998864 43 578999999999999999999999999984 464 5678899
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS 543 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 543 (648)
...+...|.+++|..+|....+- .+.-...++.|...|-..|++++|+..+++. .++|+ ...++.+...|-..|+.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999999762 3336778899999999999999999999998 88998 66799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 544 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
..|++.+.+++..+|.-..++..|+.+|..+|++.+|++-|+..++..
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999998843
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.4e-18 Score=186.71 Aligned_cols=251 Identities=14% Similarity=0.060 Sum_probs=200.1
Q ss_pred cCCHHHHHHHHHHHHHcC-CCc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAG-IEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (648)
.+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...... +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888888764 223 34556666777778889999999888887764 344667778888888999999999
Q ss_pred HHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816 414 KVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490 (648)
Q Consensus 414 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 490 (648)
..|+... +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 9988765 3467788888999999999999999999998854 235667777888889999999999999999873
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV-L-------VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+.+...++.+...+...|++++|++.|++. .+.|+. . .++..+..+...|++++|+.+++++++.+|++.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4457888999999999999999999999986 444431 1 112222233446999999999999999999998
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++..++.++...|++++|++++++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999999999998764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2.8e-19 Score=182.61 Aligned_cols=293 Identities=12% Similarity=0.059 Sum_probs=203.5
Q ss_pred HHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhccCChh
Q 037816 302 YSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---PNMVSAVLGVFGVDTSLG 375 (648)
Q Consensus 302 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~ 375 (648)
+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34445555555555555442 222344555555566666666666665555322111 134455555666666666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C------hhHHHHHHHHHHHcCChHHHHHHH
Q 037816 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--N------SVSWNSMIAAFARHGNGFKALELY 447 (648)
Q Consensus 376 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~ 447 (648)
.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+...|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665442 344556666666677777777777766665421 1 123456677788889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037816 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD 526 (648)
Q Consensus 448 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 526 (648)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|.+.|++++|.+.++++ ...|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9988754 234567777888899999999999999999864 22223566788999999999999999999988 56788
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCce
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC---SGRWKERAKAIKRMKEMGVDKETGI 598 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 598 (648)
...+..++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.+++..++++|.+.++.|+|..
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 77778888999999999999999999999988875 45555555443 5699999999999999999888853
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.6e-17 Score=175.10 Aligned_cols=369 Identities=11% Similarity=-0.008 Sum_probs=280.1
Q ss_pred hcCChhHHHHHhcccCCC------CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHH
Q 037816 203 KCGSSSSGRKVFGEMRVR------NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 276 (648)
+..+++.-.-.|+..++. +......++..+.+.|++++|..+++........+.. ....++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 455565555555554421 3334556678888999999999999998775433333 344444566678999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353 (648)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 353 (648)
...++.+.+.. +.+...+..+...+...|++++|.+.+++... | +...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998874 45566788888999999999999999998876 3 45577888889999999999999999887664
Q ss_pred CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHH
Q 037816 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSM 430 (648)
Q Consensus 354 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 430 (648)
.. +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..+++... .+...+..+
T Consensus 175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 32 23333333 34778899999999999887765444455556667788899999999999988753 366778888
Q ss_pred HHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816 431 IAAFARHGNGFK----ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506 (648)
Q Consensus 431 ~~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (648)
...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...++++.+. -+.+...+..+..+|.
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~ 329 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALR 329 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 999999999986 899999998853 235678888899999999999999999999873 2336677888899999
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816 507 RAGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
+.|++++|.+.++++ ...|+... +..+..++...|+.++|+..|+++++..|++. ...+++|...+
T Consensus 330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~ 397 (656)
T PRK15174 330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLAL 397 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHH
Confidence 999999999999988 55666544 34456778899999999999999999998864 23444555555
Q ss_pred HHHHhC
Q 037816 585 KRMKEM 590 (648)
Q Consensus 585 ~~m~~~ 590 (648)
.+..+.
T Consensus 398 ~~~~~~ 403 (656)
T PRK15174 398 DGQISA 403 (656)
T ss_pred HHHHHh
Confidence 555543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=2e-16 Score=170.18 Aligned_cols=252 Identities=11% Similarity=0.035 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHhccCC------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHH
Q 037816 306 GSVEDAWQIFEFAEEL------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ 379 (648)
Q Consensus 306 ~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 379 (648)
+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-....|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566666666555431 22345555666666777777777777766542 2234466666666677777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037816 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456 (648)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 456 (648)
.++.+.+.. +.+..++..+...+...|++++|...|++... .+...+..+...+.+.|++++|+..+++..+.. +
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 777766653 44566777777788888888888888877652 345667777778888888888888888887643 2
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HH
Q 037816 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VL 528 (648)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 528 (648)
.+...+..+...+...|++++|...|++..+. .-..+. ..++.....+...|++++|.+++++. .+.|+ ..
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 35667777888888888888888888887763 111111 11222333344568889999888886 55554 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+..+...+...|++++|+..|+++.++.+...
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 677888888899999999999999888776543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.9e-16 Score=171.90 Aligned_cols=364 Identities=9% Similarity=-0.005 Sum_probs=190.2
Q ss_pred HHHHHHHHhHhcCChhHHHHHhcccC--CC-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 037816 193 VGNALITSYFKCGSSSSGRKVFGEMR--VR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269 (648)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 269 (648)
.+..+...+.+.|++++|.++|+... .| +...+..+...+...|++++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34444444444445555544444432 11 2233444444455555555555555555432 1221114444444445
Q ss_pred cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc--------cHHHHHHHHH-----Hc
Q 037816 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV--------SMTVILVGFA-----QN 336 (648)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~ 336 (648)
.|+.++|...++.+.+.. +.+...+..+..++...+..+.|.+.++.... ++. ....++.... ..
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 555555555555554442 22333334455555566666666666665544 111 1111111111 11
Q ss_pred CCH---HHHHHHHHHHHHc-CCCcCHH-HHH----HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816 337 GFE---EEAMQLFVKMVKA-GIEIDPN-MVS----AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 337 ~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (648)
+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.+........+..+|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 223 5677777777643 1122221 111 112334455677777777777766542211112222455677777
Q ss_pred CHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHH
Q 037816 408 DLEDSIKVFSRMAPRN-------SVSWNSMIAAFARHGNGFKALELYEEMKLEG-----------VEPTD---VTFLSLL 466 (648)
Q Consensus 408 ~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~ll 466 (648)
++++|+..|+++...+ ......+..++...|++++|...++++.+.. -.|+. ..+..+.
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 7777777777654221 1234445556667777777777777776542 01221 2334455
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSE 544 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 544 (648)
..+...|++++|++.++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|+++
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence 566667777777777777765 23446666777777777777777777777766 44554 444555555666777777
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 037816 545 MGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~ 562 (648)
+|+..++++++..|+++.
T Consensus 445 ~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 777777777777777653
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.1e-17 Score=170.97 Aligned_cols=290 Identities=15% Similarity=0.148 Sum_probs=195.2
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHh
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSK 304 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 304 (648)
...+...|++++|+..|+++.+.+ |+ ..++..+...+...|++++|..+++.+...+..++ ...+..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L------ 113 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL------ 113 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------
Confidence 344566778888888888887642 33 33555555666666666666666666554321111 1233444
Q ss_pred cCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816 305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384 (648)
Q Consensus 305 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 384 (648)
...|...|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+
T Consensus 114 -------------------------a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 114 -------------------------GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred -------------------------HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 444455555555555555554431 233444555555555555555555555555
Q ss_pred HHhCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816 385 IKSDFTSN----PFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457 (648)
Q Consensus 385 ~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 457 (648)
.+.+..+. ...+..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|.++++++.+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 54332211 12344566677788888888888887653 245577778888999999999999999998754222
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGA 536 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 536 (648)
...++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 2456788889999999999999999999764 566677788999999999999999999887 667999899888877
Q ss_pred HHH---cCChHHHHHHHHHHHh
Q 037816 537 CSI---HGDSEMGKYAAEKLFL 555 (648)
Q Consensus 537 ~~~---~g~~~~A~~~~~~~~~ 555 (648)
+.. .|+.++++..++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 664 4588889988888875
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1e-16 Score=171.72 Aligned_cols=352 Identities=11% Similarity=-0.029 Sum_probs=278.3
Q ss_pred HHCCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 037816 233 VQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED 310 (648)
Q Consensus 233 ~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 310 (648)
.+..+|+.---.|....++ .-..+......++..+.+.|+++.|..+++..+.....+ ......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3455555544444443221 111233445667788889999999999999998876443 4445556677778999999
Q ss_pred HHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 037816 311 AWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387 (648)
Q Consensus 311 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 387 (648)
|...|+.+... +...+..+...+...|++++|...+++..... +.+...+..+...+...|+.++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999998763 45567788889999999999999999998863 445677888889999999999999999988766
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037816 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL 463 (648)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 463 (648)
.. .+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 53 333344333 3478899999999999987542 33344556778899999999999999999864 33567788
Q ss_pred HHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 037816 464 SLLHACSHVGLVNK----GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGAC 537 (648)
Q Consensus 464 ~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 537 (648)
.+...+...|++++ |...++++.+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999986 89999999873 3347789999999999999999999999998 55565 56677788899
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
...|++++|+..++++.+..|.+...+..++.++...|++++|+..+++..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987777778899999999999999999998754
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.7e-16 Score=160.86 Aligned_cols=517 Identities=10% Similarity=0.037 Sum_probs=276.1
Q ss_pred CCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHH---Hhc-
Q 037816 58 GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF---LRN- 133 (648)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~---~~~- 133 (648)
+++..|..+|..++..-+.. +||+.+- +..++.+.|+.+.|+..|....+-|+..-++++... ...
T Consensus 178 kdY~~al~yyk~al~inp~~--------~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPAC--------KADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN 247 (1018)
T ss_pred ccHHHHHHHHHHHHhcCccc--------CCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc
Confidence 35555555555544443333 4444332 123444555555555555555443333322222111 111
Q ss_pred --CCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhHhcCChhH
Q 037816 134 --GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE--EVTVGNALITSYFKCGSSSS 209 (648)
Q Consensus 134 --g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 209 (648)
..+..+...+...-..+ |..+...+.|..-+.-.++...+..+...+....... -...|--+.++|-..|++++
T Consensus 248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 12233333333332222 3333344455555555555555555555555432111 11223445555555555555
Q ss_pred HHHHhcccCC--CC--cccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccC----ChHHHHHHHH
Q 037816 210 GRKVFGEMRV--RN--VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ----ALCEGRQIHG 281 (648)
Q Consensus 210 A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~ 281 (648)
|...|.+..+ ++ +..+--|...+.+.|+.+.+...|+...+. .+-+..|...+...|+..+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 5555544432 11 222334455555555555555555555441 1122233333333333332 2333333333
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 037816 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA- 352 (648)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 352 (648)
...+.- +.|...|..+...+...+-+ .++..|.... ...+...|.+...+...|++.+|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 333322 33444444444444333222 2233332221 123444555555666666666666666655443
Q ss_pred --CCCcCH------HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---C
Q 037816 353 --GIEIDP------NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---P 421 (648)
Q Consensus 353 --~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 421 (648)
...+|. .+--.+....-..++.+.|.+.|..+.+.. |.-+..|-.+.......+...+|...+.... +
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 111222 112223333344556666666666665543 1112222222222222345556666666554 3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHh
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH------------VGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~ 488 (648)
.++..+..+...+.+...+..|.+-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~- 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR- 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-
Confidence 35566666666777777777777766555542 123566666666665432 2356788888888876
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccH
Q 037816 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPY 564 (648)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 564 (648)
.-+-|...-+-+.-.++..|++.+|..+|.+. .......+|..+..+|...|++-.|++.|+...+.. .++..+.
T Consensus 641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 34458888888999999999999999999988 233356678889999999999999999999998654 3467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 565 ILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
..|+.++.+.|++.+|.+.+...+...+
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 8999999999999999999888777543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.5e-16 Score=174.21 Aligned_cols=394 Identities=10% Similarity=0.010 Sum_probs=299.4
Q ss_pred CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C--CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHH
Q 037816 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R--NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSS 263 (648)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~l 263 (648)
+.+.......+.+....|+.++|++++..... . +...+..+...+...|++++|.++|++..+. .|+ ......+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34555566777888899999999999998864 2 3345889999999999999999999998763 344 4556677
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHH
Q 037816 264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEE 340 (648)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 340 (648)
...+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+. +...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 788899999999999999998873 44555 888999999999999999999998763 3445566777888899999
Q ss_pred HHHHHHHHHHHcCCCcCH------HHHHHHHHHHh-----ccCCh---hHHHHHHHHHHHh-CCCCchh-HHH----HHH
Q 037816 341 EAMQLFVKMVKAGIEIDP------NMVSAVLGVFG-----VDTSL---GLGKQIHSLIIKS-DFTSNPF-VNN----GLI 400 (648)
Q Consensus 341 ~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li 400 (648)
+|+..+++... .|+. ......+.... ..+++ +.|.+.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998886653 2321 11122222222 12233 6788888888754 2223221 111 113
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhc
Q 037816 401 NMYSKCGDLEDSIKVFSRMAPRN---S-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-----DVTFLSLLHACSH 471 (648)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~ 471 (648)
..+...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++.+.. |. ......+..++..
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHh
Confidence 34567799999999999987532 1 122235678999999999999999988643 32 3456667778899
Q ss_pred cCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHR----------ISPR---AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA 536 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 536 (648)
.|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999987310 0122 234567788999999999999999998 4444 46778888899
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...|++++|++.++++++..|++...+...+..+...|++++|..+++++.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999874
No 24
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.9e-16 Score=156.86 Aligned_cols=510 Identities=9% Similarity=0.020 Sum_probs=362.4
Q ss_pred CcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHHHHhhccCC--CC----CcccHHHHHHHHH
Q 037816 60 FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNAVKLFDDMP--MR----DTVSWNTMVSGFL 131 (648)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~--~~----~~~~y~~li~~~~ 131 (648)
++.|...|..+.+. .|+... ..|..+ ....|++..|+..|.... .| |+. -.+..++.
T Consensus 146 ~~~A~a~F~~Vl~~------------sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~ 210 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ------------SPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFW 210 (1018)
T ss_pred HHHHHHHHHHHHhh------------CCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHH
Confidence 47788888888777 444322 233444 445689999999999854 22 332 23345667
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChh
Q 037816 132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL---SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208 (648)
Q Consensus 132 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 208 (648)
+.|+.+.|+..|.+..+.+ |+...++..|--.-....+ ...+..++....... ..++.+.+.|...|.-.|+++
T Consensus 211 kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred hccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence 8999999999999999876 6555344444433333333 334444444444333 567788899999999999999
Q ss_pred HHHHHhcccCCCC------cccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHhhccCChHHHHHHH
Q 037816 209 SGRKVFGEMRVRN------VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL--TYLSSVMACSGLQALCEGRQIH 280 (648)
Q Consensus 209 ~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~ 280 (648)
.+..+...+...+ ...|-.+.++|-..|++++|...|.+..+ ..||.. .+..+...+...|+++.+...|
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 9999988876432 23577788999999999999999988765 345553 4456777889999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 037816 281 GILWKLALQSDLCIESALMDMYSKCG----SVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMV--- 350 (648)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~--- 350 (648)
+.+.+.. +.+..+...|...|...+ ..+.|..++.+..++. ...|-.+...+-. ++...++..|....
T Consensus 366 Ekv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 366 EKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH
Confidence 9998874 556667777888887775 5677888887777654 4445445454444 44444477776554
Q ss_pred -HcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCch------hHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 037816 351 -KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS---DFTSNP------FVNNGLINMYSKCGDLEDSIKVFSRMA 420 (648)
Q Consensus 351 -~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (648)
..+-.+.+...+.+...+...|++..|...|...... ...++. .+--.+..++-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4555678888999999999999999999999888755 112222 222335566667789999999999887
Q ss_pred CCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 037816 421 PRN---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH 497 (648)
Q Consensus 421 ~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 497 (648)
+.. +..|-.+.......+...+|...+.+....+ ..++..+..+...+.....+..|..-|....+.....+|+..
T Consensus 524 kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 524 KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 532 3344444433334577889999999888643 344555555666788888888888877777664344456666
Q ss_pred HHHHHHHhhh------------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816 498 YACVVDMVGR------------AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563 (648)
Q Consensus 498 ~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 563 (648)
.-.|.+.|.. .+..++|+++|.++ ...| |...-+-+.-.++..|++..|..+|.++.+...+.+.+
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV 682 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence 6666665432 24577899998887 4444 56777778888899999999999999999887788899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 564 YILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 564 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
|..++.+|..+|+|..|++.|+...+.-.
T Consensus 683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999776544
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=3.9e-15 Score=159.69 Aligned_cols=438 Identities=8% Similarity=0.013 Sum_probs=275.3
Q ss_pred HHHhcCCChhHHHHhhccCCCCCcc---cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHH--HHHHhhccCC
Q 037816 97 SFYLKCDQMRNAVKLFDDMPMRDTV---SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSEL 171 (648)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~~~~~~~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~--ll~~~~~~~~ 171 (648)
-...+.|+++.|+..|++..+.++. .-..++..+...|+.++|+..+++... |.....+.. +...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence 3455667777777777776632221 122666666667777777777777661 222212222 2445666677
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCc--ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--ITWTAVISGLVQNQLYEEGLKLFVKMH 249 (648)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 249 (648)
++.|..+++.+.+.. +.+...+..++..+...++.++|++.++.+...+. ..+..++..+...++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777776654 33455555666666666777777776666654332 223222222222444444666666665
Q ss_pred hCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH
Q 037816 250 LGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328 (648)
Q Consensus 250 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 328 (648)
+. .|+ ...+..+..++.+.|-...|.++...- |+..+-...... +.+.|-+..+....++.
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----- 258 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----- 258 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc-----
Confidence 53 233 334445555555555555555444331 111110000000 01111111111110000
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHc-CCCcC-HH----HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 329 ILVGFAQNG---FEEEAMQLFVKMVKA-GIEID-PN----MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 329 li~~~~~~~---~~~~a~~~~~~m~~~-~~~p~-~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
.... -.+.|+.-++.+... +..|. .. ...-.+-++...++..++...++.+...+.+....+-.++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 0111 234566666665542 11232 22 2234456777889999999999999988877777888999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CC--
Q 037816 400 INMYSKCGDLEDSIKVFSRMAPR---------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-----------EP-- 457 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p-- 457 (648)
.++|...+++++|+.+|..+..+ +......|.-+|...+++++|..+++++.+.-. .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 99999999999999999987432 233356788899999999999999999987321 12
Q ss_pred CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037816 458 TDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALL 534 (648)
Q Consensus 458 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 534 (648)
|-. .+..++..+...|++.+|++.++++.. .-+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 222 234456778899999999999999976 34559999999999999999999999999877 55665 55566777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccH
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 564 (648)
.++...+++.+|..+.+.+.+..|+++.+-
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 888899999999999999999999997443
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.5e-14 Score=134.93 Aligned_cols=427 Identities=14% Similarity=0.113 Sum_probs=292.6
Q ss_pred cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh---ccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 037816 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD---RSELSLVSKMIHCLVYLCGYEEEVTVGNA 196 (648)
Q Consensus 120 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 196 (648)
+.+=|.|+. ...+|....+.-+|+.|...|+..... .-..|++..+ ..+-.-.-.+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 445566665 366889999999999999998755555 5555555422 2222212222333344334 2333333
Q ss_pred HHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHH
Q 037816 197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG 276 (648)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 276 (648)
+.|++.+ ++-+.......+|.+||.++|+--..+.|.++|++-.....+.+..+||.+|.+.+-.. .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 3454433 44455555668999999999999999999999999998889999999999998765433 3
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 037816 277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI 356 (648)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 356 (648)
.++..+|....+.||..|+|+++.+..+.|+++.|. ..|++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCc
Confidence 889999999999999999999999999999988775 35677788888888888
Q ss_pred CHHHHHHHHHHHhccCChhH-HHHHHHHHHH----hCC----CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC------
Q 037816 357 DPNMVSAVLGVFGVDTSLGL-GKQIHSLIIK----SDF----TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP------ 421 (648)
Q Consensus 357 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------ 421 (648)
...+|..+|..+++.++..+ +..+..++.. ..+ +.+...+..-+..|.+..+.+-|.++-.-+..
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 88888888888888877654 3333333332 222 23445566667777788888877777655442
Q ss_pred --C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816 422 --R---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496 (648)
Q Consensus 422 --~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 496 (648)
+ ...-|..+....|.....+.-+..|+.|.-+-.-|+..+...++++....|.++-.-+++..++. +|...+..
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~ 469 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSD 469 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHH
Confidence 1 22345666777777888888888888888776778888888888888888888888888888777 36555555
Q ss_pred HHHHHHHHhhhcC-CH--------HH-----HHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 497 HYACVVDMVGRAG-LL--------IE-----ARSFIE-------RM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 497 ~~~~l~~~~~~~g-~~--------~~-----A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
...-+...+++.+ +. .. |..+++ ++ ..+-.....+.++-.+.+.|..++|.+++.-..
T Consensus 470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 5544555555443 11 11 111111 11 223345566777777889999999999988886
Q ss_pred hcC---CCCC--ccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 555 LAQ---PDSP--APYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 555 ~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
+.. |..+ .+..-+.+.-...+....|+..++-|...+.
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 533 3332 2233455566677888899999998876553
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=2.2e-14 Score=154.04 Aligned_cols=450 Identities=10% Similarity=0.009 Sum_probs=316.4
Q ss_pred CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH--HHHHHHHHHHhcCCChhHHHHhhccCCCCCc
Q 037816 43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120 (648)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 120 (648)
.+.+...-+-...+.|++..|...+++..+. .|+. .++ .++..+...|+.++|+..+++...|+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~------------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n 99 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA------------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN 99 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC
Confidence 3344444445567899999999999999988 5653 355 888889999999999999999987644
Q ss_pred c-cHHHH--HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 037816 121 V-SWNTM--VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL 197 (648)
Q Consensus 121 ~-~y~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (648)
. .+..+ ...+...|++++|+++|+++.+.. |++...+..++..+...++.++|...++.+.+. .|+...+..+
T Consensus 100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 4 44444 447788899999999999999876 777667888888899999999999999998875 4555555555
Q ss_pred HHHhHhcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChH
Q 037816 198 ITSYFKCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 274 (648)
+..+...++..+|++.++++.. | +...+..+..++.+.|-...|+++.++- |+..+-...... ..+
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~ 244 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERD 244 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHH
Confidence 5555556667669999999873 4 4566788889999999999999887764 333222111110 000
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcc-c----HHHHHHHHHHcCCHHHHHH
Q 037816 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-----LDGV-S----MTVILVGFAQNGFEEEAMQ 344 (648)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~----~~~li~~~~~~~~~~~a~~ 344 (648)
.+ .+.++.+..++..- . . +..-.+.|+.-++.+.. |... . .--.+-++...++..++++
T Consensus 245 ~~----a~~vr~a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~ 313 (822)
T PRK14574 245 AA----AEQVRMAVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIK 313 (822)
T ss_pred HH----HHHHhhcccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 01 11111111111000 0 0 00012233333333222 1111 1 1124556778888899999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 037816 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-----FTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419 (648)
Q Consensus 345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (648)
.|+.+...+.+....+-..+..+|...+++++|..+++.+.... .+++......|..+|...+++++|..+++.+
T Consensus 314 ~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 314 EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999888866566688888888999999999999998886543 2334444678888999999999999999887
Q ss_pred CC--C-------------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816 420 AP--R-------------N---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481 (648)
Q Consensus 420 ~~--~-------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 481 (648)
.+ | | ...+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.
T Consensus 394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~ 472 (822)
T PRK14574 394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQE 472 (822)
T ss_pred HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 63 1 1 1234456778889999999999999998854 44788888899999999999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037816 482 LKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG 535 (648)
Q Consensus 482 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 535 (648)
++.... ..| +..+....+..+...|++.+|..+.+.. ...|+......|-+
T Consensus 473 ~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 473 LKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred HHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 977754 355 6777888899999999999999998777 44565554444433
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=6.9e-14 Score=142.64 Aligned_cols=542 Identities=11% Similarity=0.068 Sum_probs=379.1
Q ss_pred cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhcc
Q 037816 35 STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114 (648)
Q Consensus 35 ~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 114 (648)
....++| .........+.+...|++++|..++.++++. - |.....|..|...|-..|+.+++...+-.
T Consensus 131 ~~~~l~~-~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---d--------p~~~~ay~tL~~IyEqrGd~eK~l~~~ll 198 (895)
T KOG2076|consen 131 GKSKLAP-ELRQLLGEANNLFARGDLEEAEEILMEVIKQ---D--------PRNPIAYYTLGEIYEQRGDIEKALNFWLL 198 (895)
T ss_pred cccccCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---C--------ccchhhHHHHHHHHHHcccHHHHHHHHHH
Confidence 3334555 4555566666666669999999999999998 2 66788999999999999999999887644
Q ss_pred C---CCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCCh
Q 037816 115 M---PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191 (648)
Q Consensus 115 ~---~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (648)
. .+.|...|-.+..-..+.|++.+|.-.|.+.++.. |+....+-.-...|.+.|+...|..-+..+.....+.|.
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 3 35577889999999999999999999999999876 666657777788899999999999999999886543333
Q ss_pred hHHH----HHHHHhHhcCChhHHHHHhcccCC-----CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC-------
Q 037816 192 TVGN----ALITSYFKCGSSSSGRKVFGEMRV-----RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP------- 255 (648)
Q Consensus 192 ~~~~----~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------- 255 (648)
.-.. ..++.+...++-+.|.+.++.... -+...++.++..+.+...++.|......+......+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 3333 335556667777889888887753 245578999999999999999999988886621111
Q ss_pred ---------------ChhhHH----HHHHHhhccCChHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816 256 ---------------NSLTYL----SSVMACSGLQALCEGRQIHGILWKLAL--QSDLCIESALMDMYSKCGSVEDAWQI 314 (648)
Q Consensus 256 ---------------~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 314 (648)
+...|. -+.-++......+....+...+..... .-+...|.-+..+|...|++.+|+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111221 223344556666667777777777764 44566888999999999999999999
Q ss_pred HHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH-----
Q 037816 315 FEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII----- 385 (648)
Q Consensus 315 ~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----- 385 (648)
|..+.. .+...|-.+..+|...|.+++|.+.|++..... +-+...-..|-..+.+.|+.++|.+.+..+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 999876 356688899999999999999999999998753 3344555666677788999999999988843
Q ss_pred ---HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--------------C--------------------------C
Q 037816 386 ---KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--------------P--------------------------R 422 (648)
Q Consensus 386 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~--------------------------~ 422 (648)
..+..|.....-.....+...|+.++-..+-..|. + +
T Consensus 516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k 595 (895)
T KOG2076|consen 516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK 595 (895)
T ss_pred chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence 34456666666666667777777765443322211 0 0
Q ss_pred ------------C-------------h----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHH
Q 037816 423 ------------N-------------S----VSWNSMIAAFARHGNGFKALELYEEMKLEGV--EPTD---VTFLSLLHA 468 (648)
Q Consensus 423 ------------~-------------~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~---~~~~~ll~~ 468 (648)
+ . ..+.-++.++++.+++++|+.+...+..... .++. ..-...+.+
T Consensus 596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 0 0 1134467788899999999999988876432 1222 122345566
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC---ChhHHHHHHHH-----------------------------------hhhcCC
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISP---RAEHYACVVDM-----------------------------------VGRAGL 510 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~-----------------------------------~~~~g~ 510 (648)
++..+++..|...++.+...++... -...|+..... +..++.
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s 755 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS 755 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence 7888999999999998877533322 22333322222 223355
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHH-HHH----------HcCChHHHHHHHHHHHhcCCC--CCccHHHHHHHHHhcCC
Q 037816 511 LIEARSFIERM-PVKPDVLVWQALLG-ACS----------IHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCSGR 576 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 576 (648)
+.-|+..+-+. ...||....+.++. ++. ++-..-+++.++++..++... ...+++.++++|-..|-
T Consensus 756 ~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl 835 (895)
T KOG2076|consen 756 FKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL 835 (895)
T ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence 56666655544 34455333333332 111 122345566666666655433 56789999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 037816 577 WKERAKAIKRMKEMG 591 (648)
Q Consensus 577 ~~~A~~~~~~m~~~~ 591 (648)
..-|+.+|++.+.-.
T Consensus 836 ~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 836 VHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999998754
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.2e-14 Score=135.38 Aligned_cols=419 Identities=12% Similarity=0.072 Sum_probs=238.7
Q ss_pred hHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHH-HHhhccCC------
Q 037816 46 DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNA-VKLFDDMP------ 116 (648)
Q Consensus 46 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A-~~~~~~~~------ 116 (648)
+=+.+++. ..+|.+.++.-+|+.|... |. +.+..+-..|.+. |..+.++--| ++.|-.|.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e--~~--------~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S 186 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSE--NV--------DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS 186 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhc--CC--------CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc
Confidence 34444443 4466777888888888777 66 5555555555442 2222222211 22222222
Q ss_pred -----------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHH
Q 037816 117 -----------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179 (648)
Q Consensus 117 -----------------~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~ 179 (648)
.+...+|..+|.++|+--..+.|.++|++..+...+.+.. +|+.+|.+-.-.. .+.+.
T Consensus 187 ~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~-aFN~lI~~~S~~~----~K~Lv 261 (625)
T KOG4422|consen 187 TSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYRE-AFNGLIGASSYSV----GKKLV 261 (625)
T ss_pred ccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHH-hhhhhhhHHHhhc----cHHHH
Confidence 2344566666666666666666666666666655555555 6666666533221 15566
Q ss_pred HHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhh
Q 037816 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT 259 (648)
Q Consensus 180 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 259 (648)
.+|......||..|+|+++++..+.|+++.|. ..|++++.+|++.|+.|...+
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSS 314 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhh
Confidence 66666666666666666666666666555443 234566777777778887777
Q ss_pred HHHHHHHhhccCChHH-HHHHHHHHHHh--c--C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------
Q 037816 260 YLSSVMACSGLQALCE-GRQIHGILWKL--A--L----QSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--------- 321 (648)
Q Consensus 260 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------- 321 (648)
|..+|..+.+.++..+ +..++.++... | + +.|...+..-+..|.+..+.+-|.++-.-+...
T Consensus 315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~ 394 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD 394 (625)
T ss_pred HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence 7777777776666543 33444444321 2 2 223445566666777777777777665544331
Q ss_pred --CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 322 --DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 322 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
...-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++-..++|..++..|...+.....-+
T Consensus 395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei 474 (625)
T KOG4422|consen 395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 122355677777888888999999999988888899999999999999999999999999999988855544444444
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 037816 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKA-LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK 477 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 477 (648)
+..+++..- .|+...-..+-...++. -++.++ ...-.+|.+.. ......+.+.-.+.+.|..++
T Consensus 475 l~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 475 LMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred HHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHH
Confidence 444443320 11111000111111110 011111 12223344333 333344455555666666666
Q ss_pred HHHHHHHhHHhcCCCCChhHHH---HHHHHhhhcCCHHHHHHHHHhC
Q 037816 478 GMEFLKSMTEVHRISPRAEHYA---CVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 478 A~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
|.+++..+.++..--|-....+ -+++.-.+......|..+++-|
T Consensus 541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666666644333333333333 3444455556666666666655
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.76 E-value=7.8e-15 Score=148.50 Aligned_cols=535 Identities=10% Similarity=0.038 Sum_probs=319.3
Q ss_pred ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhc
Q 037816 34 SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFD 113 (648)
Q Consensus 34 ~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 113 (648)
++..|+.| ++.||.+++..|+..|+.+.|- +|..|.-. .+ +.+..+++.++....+.++.+.+.
T Consensus 16 ~e~~gi~P-nRvtyqsLiarYc~~gdieaat-if~fm~~k--sL--------pv~e~vf~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 16 HEISGILP-NRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SL--------PVREGVFRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred HHHhcCCC-chhhHHHHHHHHcccCCCcccc-chhhhhcc--cc--------cccchhHHHHHhcccccccccCCC----
Confidence 48899999 9999999999999999999999 98888777 66 888999999999999999988776
Q ss_pred cCCCCCcccHHHHHHHHHhcCCchH---HHHHHHHHH----HcCCCCCcHhHHHHHHHHhhccCChHH--------HHHH
Q 037816 114 DMPMRDTVSWNTMVSGFLRNGEFDM---GFGFFKRSL----ELGFYQLDQASFTIILSACDRSELSLV--------SKMI 178 (648)
Q Consensus 114 ~~~~~~~~~y~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~~~~~~ll~~~~~~~~~~~--------a~~~ 178 (648)
.|...+|..|..+|.+.|+... ..+.++... ..|+.-... -|...+.+|-+ -..+. -+.+
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~-~fl~k~~c~p~-~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPER-WFLMKIHCCPH-SLPDAENAILLLVLEGL 154 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHH-HHHhhcccCcc-cchhHHHHHHHHHHHHH
Confidence 7889999999999999999754 222222222 234322222 22222233222 11111 1233
Q ss_pred HHHHHHhCC-CCChhHHHHHHHHhHhc-----CChhHHHHHhcccC-CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC
Q 037816 179 HCLVYLCGY-EEEVTVGNALITSYFKC-----GSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251 (648)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 251 (648)
++..++.+. .|...-++... .+.++ ..+++-........ .++..+|.++++.-..+|+.+.|..++.+|++.
T Consensus 155 waqllkll~~~Pvsa~~~p~~-vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQ-VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHHHhhCCcccccchHH-HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 333333331 12111111111 11222 22333333333333 378899999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHH
Q 037816 252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331 (648)
Q Consensus 252 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 331 (648)
|++.+.+-|..++-+ .++...++.+++-|...|+.|+..|+...+..+.+.|....+.+....-.--....+..+..
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACR 310 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhc
Confidence 999999988888876 88899999999999999999999999988877777555322221111000001112222222
Q ss_pred HHHH-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC---CCchhHHHHHHHHH
Q 037816 332 GFAQ-----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF---TSNPFVNNGLINMY 403 (648)
Q Consensus 332 ~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~ 403 (648)
+... .+...-....+.+..-.|+......|...... ...|.-+...++...+..... ..++..|..++.-|
T Consensus 311 g~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy 389 (1088)
T KOG4318|consen 311 GLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY 389 (1088)
T ss_pred ccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence 2111 11112222233333333444344444333332 235666666666665543221 12333444444444
Q ss_pred HhCCCHHHHHHHHh--hcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-------CHHHHHHHHHH
Q 037816 404 SKCGDLEDSIKVFS--RMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-------TDVTFLSLLHA 468 (648)
Q Consensus 404 ~~~g~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-------~~~~~~~ll~~ 468 (648)
.+.-+..-...++. ...+. +...-..+..... .-+...+.+-+..+... -+.| -...-+.++..
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 33221111111111 00000 0000000111111 11222222222221110 0111 11223455666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCh
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVLVWQALLGACSIHGDS 543 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~ 543 (648)
|+..-+..+++..-++.... -+ ...|..||+.+....+.+.|..+.++. .+..|..-+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 66666666776655555442 22 278999999999999999999999988 2334566778888889999999
Q ss_pred HHHHHHHHHHHhc---CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037816 544 EMGKYAAEKLFLA---QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600 (648)
Q Consensus 544 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 600 (648)
..+..+++.+.+. .|.-..++..+.+.....|+.+...++.+-+...|+.. +|--|
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9999999888753 23334566677777888899999999999999999876 34434
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=1.1e-14 Score=136.44 Aligned_cols=445 Identities=11% Similarity=0.051 Sum_probs=305.8
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHhH
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE----VTVGNALITSYF 202 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 202 (648)
.+-|..+....+|+..|+-+.++...|+....-..+-..+.+.+.+..|..+++..+..-...+ +.+.+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3455556778899999999988888888773334455667888889999999888876532222 234555556678
Q ss_pred hcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH--------HHHHHHhhccC-
Q 037816 203 KCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY--------LSSVMACSGLQ- 271 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--------~~ll~~~~~~~- 271 (648)
+.|.++.|...|+... .|+..+--.|+-++..-|+.++..+.|.+|..--..||..-| ..|+.-..+..
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 8999999999999886 466555444455555678999999999999764333333221 12222111111
Q ss_pred ----------ChHHHHHHHHHHHHhcCCCchh-------------HH--------HHHHHHHHhcCCHHHHHHHHHhccC
Q 037816 272 ----------ALCEGRQIHGILWKLALQSDLC-------------IE--------SALMDMYSKCGSVEDAWQIFEFAEE 320 (648)
Q Consensus 272 ----------~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~A~~~~~~~~~ 320 (648)
+.+++.-.-..+..--+.|+-. .+ ..-...|.+.|+++.|.++++-+.+
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~ 447 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK 447 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence 1112211111111111112110 00 1112346778888888888887777
Q ss_pred CCcccHHHHHHH-----HHH-cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchh
Q 037816 321 LDGVSMTVILVG-----FAQ-NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394 (648)
Q Consensus 321 ~~~~~~~~li~~-----~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 394 (648)
.|..+-.+.... |.+ -.++..|.++-+...... +-+....+.--+.....|++++|.+.+++.......-...
T Consensus 448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 655544332221 222 234555555544443321 2222222222233456789999999999998776544444
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 395 VNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
.|+ +.-.+-..|++++|++.|-++. ..+......+...|-...+...|++++-+.... ++.|+..+..|...|-+
T Consensus 527 lfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 527 LFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence 554 3335677899999999997765 457777778888999999999999999877663 44578889999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCChHHHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGAC-SIHGDSEMGKYA 549 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~ 549 (648)
.|+-.+|.+.+-+--+ -++-+..+..-|...|....-+++|+.+|++. -+.|+..-|..++..| .+.|++.+|..+
T Consensus 605 egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998776644 35559999999999999999999999999998 6789999999998776 567999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 550 AEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
|+...+..|.+..+...+.+.+...|.
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999888775
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=2.3e-12 Score=126.70 Aligned_cols=502 Identities=11% Similarity=0.040 Sum_probs=391.1
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~ 165 (648)
|.++..|-..+. ..+.++|..++....+--+. -.-|.-+|++...++.|..++++.++. -|.+...|.+....
T Consensus 377 P~sv~LWKaAVe----lE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~L 449 (913)
T KOG0495|consen 377 PRSVRLWKAAVE----LEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKL 449 (913)
T ss_pred CchHHHHHHHHh----ccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHH
Confidence 555555554332 34455566666655432111 223455677788899999999998876 36666588888888
Q ss_pred hhccCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC------CCcccHHHHHHHHHHC
Q 037816 166 CDRSELSLVSKMIHCLV----YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV------RNVITWTAVISGLVQN 235 (648)
Q Consensus 166 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~ 235 (648)
=-..|+.+....+.+.- ...|+..+...|-.=...|-..|..--+..+...... .-..+|+.-...|.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 88888888888887654 3467777777777777777777777666666655531 2245788888999999
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816 236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315 (648)
Q Consensus 236 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 315 (648)
+.++-|..+|....+- .+-+...|.-....--..|..+....+++.....- +.....|.....-+...|++..|..++
T Consensus 530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999988762 22344556666666677899999999999988764 455667777788888899999999999
Q ss_pred HhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 037816 316 EFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392 (648)
Q Consensus 316 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (648)
...-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. ++.-
T Consensus 608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f 684 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDF 684 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCch
Confidence 887653 4456777778888999999999999998774 577777777666667788999999999888775 3555
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037816 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469 (648)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 469 (648)
...|-.+.+.+-+.++.+.|...|..-.+ | .+..|-.|...=-+.|+.-.|..++++..-++ +-+...|...|+.=
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E 763 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME 763 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence 67788888999999999999999987664 3 55678777777788899999999999998876 44778899999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA 549 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 549 (648)
.+.|+.+.|..++.++.+ .++.+...|..-|.+..+.++-......+++. .-|+....++...+....++++|.+.
T Consensus 764 lR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 764 LRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 56778888888999988888888888888877 34566677777888889999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCE
Q 037816 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606 (648)
Q Consensus 550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 606 (648)
|+++++.+|++..+|..+...+...|.-++-.+++++... ..|.-|-.|+.+...
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 9999999999999999999999999999999999998876 567777788665433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=8.8e-13 Score=134.75 Aligned_cols=565 Identities=13% Similarity=0.045 Sum_probs=367.0
Q ss_pred ccccCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcC
Q 037816 8 LKLNSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY 83 (648)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (648)
++=|-+...|.+|..+|.++|+-..+. ..+-+.|.|...+-.+.....++|++++|.-+|..+++. -
T Consensus 167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~---~------ 237 (895)
T KOG2076|consen 167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA---N------ 237 (895)
T ss_pred HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc---C------
Confidence 344999999999999999999777763 666788878888999999999999999999999999988 2
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCc----c----cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816 84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT----V----SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155 (648)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 155 (648)
|++...+-.-...|-+.|+...|.+.|..+-+-++ . .--.++..+...++-+.|++.++.....+..-..
T Consensus 238 --p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~ 315 (895)
T KOG2076|consen 238 --PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS 315 (895)
T ss_pred --CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence 55555555567789999999999999988764322 1 2233455677777789999999888774333333
Q ss_pred HhHHHHHHHHhhccCChHHHHHHHHHHHHh---------------------------CCCCChhH-HHHHHHHhHhcCCh
Q 037816 156 QASFTIILSACDRSELSLVSKMIHCLVYLC---------------------------GYEEEVTV-GNALITSYFKCGSS 207 (648)
Q Consensus 156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~~~~~~g~~ 207 (648)
...++.++..+......+.+.......... ++.++..+ +..+--...+.+..
T Consensus 316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~ 395 (895)
T KOG2076|consen 316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKEREL 395 (895)
T ss_pred ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccch
Confidence 337777777777777777776655555441 12233333 22222222233444
Q ss_pred hHHHHHhcccC----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHH
Q 037816 208 SSGRKVFGEMR----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283 (648)
Q Consensus 208 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 283 (648)
.+++.-|-... ..++..|..+..+|...|++.+|+.+|..+......-+...|-.+..++...|..+.|.+.+..+
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44443332221 22456788899999999999999999999987666666778889999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS------------MTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
+... +.+..+-..|...+-+.|+.++|.+.+..+..+|... .-.....+.+.|+.++=+.+-..|+.
T Consensus 476 l~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 476 LILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8764 4455666788889999999999999999987766321 11123456677777665555554433
Q ss_pred cC----------------------CCcCHHHHHHHHHHHhccCChhHHHHHHH------HHHHhCCCCch--hHHHHHHH
Q 037816 352 AG----------------------IEIDPNMVSAVLGVFGVDTSLGLGKQIHS------LIIKSDFTSNP--FVNNGLIN 401 (648)
Q Consensus 352 ~~----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~--~~~~~li~ 401 (648)
.+ .+-...+...++.+-.+.++......-.. .-...|+..+. ..+.-++.
T Consensus 555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~ 634 (895)
T KOG2076|consen 555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL 634 (895)
T ss_pred HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence 21 11122233333344434433222222211 11123333333 24556677
Q ss_pred HHHhCCCHHHHHHHHhhcCCC-----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCH-HHHHHHHH-
Q 037816 402 MYSKCGDLEDSIKVFSRMAPR-----NS----VSWNSMIAAFARHGNGFKALELYEEMKLE-GV--EPTD-VTFLSLLH- 467 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~--~p~~-~~~~~ll~- 467 (648)
.+++.+++++|+.+...+... +. ..-...+.+.+..+++..|...++.|... +. .|.. ..|+..++
T Consensus 635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 788888888888877766532 11 12334455666777888888777777654 11 1111 12221111
Q ss_pred ----------------------------------HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHhh------
Q 037816 468 ----------------------------------ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV-DMVG------ 506 (648)
Q Consensus 468 ----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------ 506 (648)
-+...+.+..|++.+-.+... .|+....+.++ -++.
T Consensus 715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr 791 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQR 791 (895)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHH
Confidence 112345677888877777553 45533333322 2221
Q ss_pred ----hcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------------ccHHH
Q 037816 507 ----RAGLLIEARSFIERM-PV-KP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP------------APYIL 566 (648)
Q Consensus 507 ----~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------~~~~~ 566 (648)
|.-..-++..++.+. .. .+ ....+-.+.++|-..|-+.-|+.+|+++++..|.+. .+-..
T Consensus 792 ~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N 871 (895)
T KOG2076|consen 792 RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN 871 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence 111244566666555 11 12 466677899999999999999999999999876533 23345
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 037816 567 MANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 567 l~~~~~~~g~~~~A~~~~~~m 587 (648)
+.-+|..+|+..-|.+++++-
T Consensus 872 L~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 872 LHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred hhhhhccCCcHHHHHHHHHhh
Confidence 666899999999999998763
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=8.1e-14 Score=130.83 Aligned_cols=427 Identities=12% Similarity=0.085 Sum_probs=296.2
Q ss_pred HHHHHH---HHhhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhHhcCChhHHHHHhcccCC--CC------cccH
Q 037816 158 SFTIIL---SACDRSELSLVSKMIHCLVYLCGYEEEVTVG-NALITSYFKCGSSSSGRKVFGEMRV--RN------VITW 225 (648)
Q Consensus 158 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~ 225 (648)
||..|. .-|.......+|...++.+.+...-|+.... ..+...+.+.+.+.+|+++++.... |+ +...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 555444 4466667788888889988887766665443 3456778899999999999876642 22 2245
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhH--------HHH
Q 037816 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI--------ESA 297 (648)
Q Consensus 226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~ 297 (648)
+.+.-.+.+.|.++.|+..|+...+. .|+-.+-..|+-++...|+-++..+.|..|......+|..- -..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55556688999999999999998763 58887766677777778999999999999986543332221 122
Q ss_pred HHHHHHhcCC-----------HHHHHHHHHhccC----CCccc---HH----------H--------HHHHHHHcCCHHH
Q 037816 298 LMDMYSKCGS-----------VEDAWQIFEFAEE----LDGVS---MT----------V--------ILVGFAQNGFEEE 341 (648)
Q Consensus 298 l~~~~~~~~~-----------~~~A~~~~~~~~~----~~~~~---~~----------~--------li~~~~~~~~~~~ 341 (648)
|+.--.+... .++++-.--++.. ++... |. . -...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 3322222221 1222211112222 22110 11 0 1224788999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHH--HHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 037816 342 AMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419 (648)
Q Consensus 342 a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (648)
|+++++-+....-+.-...-+.| +..+....++..|.++-+...... .-++.....-...-...|++++|.+.|.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999888765433333332222 222233456777777776665433 223333322233344579999999999999
Q ss_pred CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816 420 APRNSVSWNSMIA---AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496 (648)
Q Consensus 420 ~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 496 (648)
...|...-.+|.. .+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.++.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 8877655444443 456789999999999888753 345777888888999999999999999998865 4566999
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816 497 HYACVVDMVGRAGLLIEARSFIER-MP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 574 (648)
+...|.+.|-+.|+-.+|.+.+-+ .. +..+..+..-|...|....-.++|+.+|+++.-..|.....-..++.++.+.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 999999999999999999987544 33 3446777777888888999999999999999888898766666777788899
Q ss_pred CChHHHHHHHHHHHhC
Q 037816 575 GRWKERAKAIKRMKEM 590 (648)
Q Consensus 575 g~~~~A~~~~~~m~~~ 590 (648)
|+|+.|.++|+...+.
T Consensus 674 gnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998774
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=2.2e-10 Score=113.05 Aligned_cols=528 Identities=13% Similarity=0.104 Sum_probs=383.6
Q ss_pred CcchHHHHHHHHhcc-----CCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC
Q 037816 43 NYVDISRLLSISAKE-----GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM 117 (648)
Q Consensus 43 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 117 (648)
|+-.|..=|++-... +|...|+-++..+.+. . |.++..|-+-.+.=-..|.+..|..+..+=-+
T Consensus 245 DpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvret--n---------P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe 313 (913)
T KOG0495|consen 245 DPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRET--N---------PKHPPGWIASARLEEVAGKLSVARNLIMKGCE 313 (913)
T ss_pred CchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhc--C---------CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777777777764433 4677888898888877 2 33344444444444445666666655533210
Q ss_pred ---CCc------------ccHHHHHHH-----------HHhcC----CchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816 118 ---RDT------------VSWNTMVSG-----------FLRNG----EFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167 (648)
Q Consensus 118 ---~~~------------~~y~~li~~-----------~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~ 167 (648)
.+. .+.-+++.- +++.- +...=..++++..+.- |++.. |=++..
T Consensus 314 ~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~i--P~sv~----LWKaAV 387 (913)
T KOG0495|consen 314 ECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHI--PRSVR----LWKAAV 387 (913)
T ss_pred hCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhC--CchHH----HHHHHH
Confidence 111 111122211 12221 2222334455555442 55542 334444
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHH
Q 037816 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
...+.+.|..++....+.- +.+.. |.-+|++..-++.|.++++...+ .+...|-+-...=-.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 5556666777777776642 33333 34456677788888888877653 3566676666666678898888888
Q ss_pred HHHH----HhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816 245 FVKM----HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD--LCIESALMDMYSKCGSVEDAWQIFEFA 318 (648)
Q Consensus 245 ~~~m----~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 318 (648)
+.+- ...|+..+...|..=..+|-..|..-.+..+....+..|+... ..+|+.-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 7654 5678889999998888899999999999999999988887543 458888888999999999999999888
Q ss_pred cCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816 319 EEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395 (648)
Q Consensus 319 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 395 (648)
.+- +...|...+..--..|..+....+|++.... ++-....+.......-..|+...|..++..+.+.. +.+..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 763 4455666666666778899999999999886 34455556666666777899999999999998876 457788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHV 472 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~ 472 (648)
+-+-+.......+++.|..+|.+.. .++...|.--+...--.+..++|.+++++.++. -|+- ..|..+.+.+-+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 8888999999999999999998876 456777776666666788999999999998884 5664 4677777888999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037816 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAA 550 (648)
Q Consensus 473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (648)
++.+.|...|..-.+ .++..+..|-.|.+.=-+.|.+-+|..++++. +...+...|...++.-.+.|+.+.|..++
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887765 45557778888888888999999999999998 44456888999999999999999999998
Q ss_pred HHHHhcCCC------------------------------CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037816 551 EKLFLAQPD------------------------------SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW 600 (648)
Q Consensus 551 ~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 600 (648)
.++++..|. |+.+...++..+....+++.|.++|.+.++.+ |+.|-.|
T Consensus 777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 888765554 44567778888889999999999999998855 5555555
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.5e-15 Score=146.57 Aligned_cols=255 Identities=20% Similarity=0.179 Sum_probs=113.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV-SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 408 (648)
...+.+.|++++|++++++......+|+...| ..+...+-..++.+.|...++.+...+. .++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 44556667777777777544433223333333 3333444556777777777777776552 355666677766 68888
Q ss_pred HHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816 409 LEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 409 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
+++|.+++...- .++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988887653 3466677778888899999999999999987533 3456777888888899999999999999999
Q ss_pred HHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 486 TEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 486 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.+. .| +......++..+...|+.+++.++++.. ....|+..+..+..++...|+.++|+..++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 874 45 6888999999999999999988888777 22445667888999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 563 PYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+...++.++...|+.++|.+++++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887644
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8.2e-12 Score=118.95 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=170.0
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHH
Q 037816 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALEL 446 (648)
Q Consensus 370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 446 (648)
-.|+.-.+..-++..++....++ ..|-.+..+|....+.++....|.... +.|+.+|..-...+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45667777777777776653332 236666667888888888888887765 34677787777777778899999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 037816 447 YEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVK 524 (648)
Q Consensus 447 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 524 (648)
|++.++. .| +...|..+.-+..+.+.+++++..|++.++ .++..+++|+.....+...+++++|.+.|+.. .+.
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999884 45 566777777777889999999999999998 57778999999999999999999999999887 334
Q ss_pred CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 525 PD---------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 525 p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
|+ +.+..+++..- -.+++..|+.+++++++++|....+|..|+..-..+|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 43 33333333222 349999999999999999999999999999999999999999999998754
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-10 Score=109.68 Aligned_cols=360 Identities=15% Similarity=0.060 Sum_probs=195.8
Q ss_pred CCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH--HHHH
Q 037816 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL--SSVM 265 (648)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~ 265 (648)
..|...+-.....+-+.|....|.+.|......-+..|.+.+....-..+.+.+..+.. |...|...+. -+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence 44544444444455667788888888877765545555555544333333332222211 1111211111 1223
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHH
Q 037816 266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345 (648)
Q Consensus 266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 345 (648)
++-.....+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+.|+.-.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------------------- 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence 4444455666666666666666666555555555555556666666666666665433211
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---C
Q 037816 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---R 422 (648)
Q Consensus 346 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 422 (648)
-|..+|+.++-.-..... ..++..-...--+-.+.|...+.+-|.-.++.++|...|++..+ .
T Consensus 297 ----------~dmdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~ 362 (559)
T KOG1155|consen 297 ----------DDMDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK 362 (559)
T ss_pred ----------hhHHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc
Confidence 122233222211110000 00111111000122233444455555556666666666665543 2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACV 501 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l 501 (648)
....|+.+..-|...++...|++.++..++-. +-|...|-.|.++|.-.+-..-|+-+|+++.+ +.| |+..|.+|
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aL 438 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVAL 438 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHH
Confidence 34456666666777777777777777776633 23666777777777777777777777777754 334 67777777
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCCccHHHHHHHHH
Q 037816 502 VDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-------AQPDSPAPYILMANIYS 572 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~ 572 (648)
.++|.+.++.++|++.|++. ....+...+..|...|-+.++.++|...+++-++ ..|.-..+...|+.-+.
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 77777777777777777766 2233456667777777777777777777776654 22323334445666677
Q ss_pred hcCChHHHHHHHHHHHh
Q 037816 573 CSGRWKERAKAIKRMKE 589 (648)
Q Consensus 573 ~~g~~~~A~~~~~~m~~ 589 (648)
+.+++++|..+......
T Consensus 519 k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLK 535 (559)
T ss_pred hhcchHHHHHHHHHHhc
Confidence 77777777766555433
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.2e-11 Score=115.33 Aligned_cols=482 Identities=11% Similarity=0.002 Sum_probs=278.2
Q ss_pred chHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccC--CCCCccc
Q 037816 45 VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDM--PMRDTVS 122 (648)
Q Consensus 45 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~ 122 (648)
.-+..+++-+..+..+..|.-+-+.+... .-|+.----+..++.-.|+++.|..+...- .+.|..+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l------------~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~c 84 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGL------------TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIAC 84 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhc------------cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHH
Confidence 34667777777777888888877777665 334444445677888889999988887654 4678889
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816 123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF 202 (648)
Q Consensus 123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 202 (648)
......++.+..++++|..++.+-... .+.. .|-.- ..+..-..+.+... .+.......+-.-...|.
T Consensus 85 ryL~~~~l~~lk~~~~al~vl~~~~~~---~~~f-~yy~~--~~~~~l~~n~~~~~------~~~~~essic~lRgk~y~ 152 (611)
T KOG1173|consen 85 RYLAAKCLVKLKEWDQALLVLGRGHVE---TNPF-SYYEK--DAANTLELNSAGED------LMINLESSICYLRGKVYV 152 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchh---hcch-hhcch--hhhceeccCccccc------ccccchhceeeeeeehhh
Confidence 999999999999999999998743110 0000 00000 00000000000000 000011111111123344
Q ss_pred hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCC----CCCChhhHHHHHHHhhccCChHHHHH
Q 037816 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL----INPNSLTYLSSVMACSGLQALCEGRQ 278 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~~~~~~a~~ 278 (648)
...+.++|...+.+....|+..+.++...-.. ..-.+.+.++.+.... .+-+......+.........-+....
T Consensus 153 al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 153 ALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred hhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence 55667777777777666666665554332211 1111212222221100 01111111111111100000000000
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 037816 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358 (648)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 358 (648)
.-.+..-.+...+..+.....+- +...+++.+..++++...+.. ++..
T Consensus 231 r~~~~sl~~l~~~~dll~~~ad~-------------------------------~y~~c~f~~c~kit~~lle~d-pfh~ 278 (611)
T KOG1173|consen 231 RNEDESLIGLAENLDLLAEKADR-------------------------------LYYGCRFKECLKITEELLEKD-PFHL 278 (611)
T ss_pred cCchhhhhhhhhcHHHHHHHHHH-------------------------------HHHcChHHHHHHHhHHHHhhC-CCCc
Confidence 00000001122223333333333 344455555555555554432 3444
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHH
Q 037816 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFA 435 (648)
Q Consensus 359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 435 (648)
..+..-|.++...|+..+-..+-..+++. .|..+.+|-++.--|.-.|+..+|++.|.+...- -...|-....+|+
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa 357 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA 357 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence 44444444444555544444444444443 2555666777777777778888888888765532 2457888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 514 (648)
-.|..++|+..+...-+.= +-....+--+.--|.+.++.+.|.++|.++.. +-| |+...+-+.-.....+.+.+|
T Consensus 358 ~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 358 GEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred hcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHH
Confidence 8888888888888776631 11222233344457788889999999988864 444 777888888777788888888
Q ss_pred HHHHHhC-----CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816 515 RSFIERM-----PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 515 ~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
...|+.. .+ ++ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|+++.|++.|.
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 8888765 11 11 245678888999999999999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 037816 586 RMKE 589 (648)
Q Consensus 586 ~m~~ 589 (648)
+.+-
T Consensus 514 KaL~ 517 (611)
T KOG1173|consen 514 KALA 517 (611)
T ss_pred HHHh
Confidence 8755
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=3.8e-11 Score=121.44 Aligned_cols=127 Identities=10% Similarity=0.005 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 502 (648)
++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .+-|+..+..+.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 4444445555555555555555555555442 2333211 122222335555555555555442 223444444555
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
..+.+.|++++|.+.|+.. ...|+...+..+..++.+.|+.++|.+++++.+.
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555544 4445555544555555555555555555554443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.2e-10 Score=110.51 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=202.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCC
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 407 (648)
..++....+.++++.-.+.....|++.+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345666667788888888888888777766666666667788889999999999887741 124566666553322222
Q ss_pred CHH-HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816 408 DLE-DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 408 ~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
++. -|..++ .+.+-.+.|..++.+-|+-.++.++|...|++..+.+ |. ...|+.+.+-|....+...|.+-++.+
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 221 122222 2223345677777888888999999999999999865 54 556777888899999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816 486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563 (648)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 563 (648)
.+ -.+-|-..|-.|.++|.-.+.+.=|+-.|++. ..+| |+..|.+|..+|.+.++.++|+..|+++...+..+..+
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 86 23448999999999999999999999999998 6666 68999999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 564 YILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 564 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+..++++|.+.++.++|.+.+++-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998766
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=2.9e-10 Score=116.07 Aligned_cols=572 Identities=12% Similarity=0.040 Sum_probs=307.4
Q ss_pred ccccCCcchhHhhHhHHhhccccCCCc-----------------------------cCCCCcCCCcchHHHHHHHHhccC
Q 037816 8 LKLNSNFPFCSSLVSPFITKIIQDPTS-----------------------------STSKLVLDNYVDISRLLSISAKEG 58 (648)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------------------~~~~~~p~~~~~~~~ll~~~~~~~ 58 (648)
.++-||-.||-.|+..|++.|+.+.+. -++.=.| .+++|..++.+|++.|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep-~aDtyt~Ll~ayr~hG 97 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEP-LADTYTNLLKAYRIHG 97 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCCCC-chhHHHHHHHHHHhcc
Confidence 356788899999999999886665552 1222256 8999999999999999
Q ss_pred CCcchhHHHHHHh---hhcC--CCC------CcC---cCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--------
Q 037816 59 HFHLGPSLHASFI---KTFE--PFD------NQN---VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-------- 116 (648)
Q Consensus 59 ~~~~a~~~~~~~~---~~~~--~~~------~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 116 (648)
|+..-..+-+.+. ..+. |.- -|. ..+.-||.. ..+.-..-.|-++.+++++..++
T Consensus 98 Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~ 174 (1088)
T KOG4318|consen 98 DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPF 174 (1088)
T ss_pred chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence 9866333322222 1110 110 000 000122221 12222222344555555554332
Q ss_pred --------------------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC
Q 037816 117 --------------------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE 170 (648)
Q Consensus 117 --------------------------~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~ 170 (648)
.+++.+|..++.+-.-.|+.+.|..++..|++.|+..+.. -|..|+-+ .+
T Consensus 175 ~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H-yFwpLl~g---~~ 250 (1088)
T KOG4318|consen 175 QVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH-YFWPLLLG---IN 250 (1088)
T ss_pred HHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc-cchhhhhc---Cc
Confidence 2467778888888888888888888888888888766666 55555544 77
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCc-----hHHHHHH
Q 037816 171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY-----EEGLKLF 245 (648)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~ 245 (648)
+...+..+...|...|+.|+.+|+..-+-.+.+.|....+....+.-.--....+..+.++...+.+. .-....+
T Consensus 251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~ 330 (1088)
T KOG4318|consen 251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGST 330 (1088)
T ss_pred cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888887777776655533322221110000011122222221111111 1111111
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc--C-CCchhHHHHHHHHHHh------------------
Q 037816 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA--L-QSDLCIESALMDMYSK------------------ 304 (648)
Q Consensus 246 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~------------------ 304 (648)
.+..-.|+.-....|.-... ....|.-+.++++-..+..-- . ..++..+..++.-|.+
T Consensus 331 k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls 409 (1088)
T KOG4318|consen 331 KKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLS 409 (1088)
T ss_pred hHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111122222222211111 111233333333333332110 0 1111222222222221
Q ss_pred ----cCCHHHHHHHHHhccC----------------CCccc-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816 305 ----CGSVEDAWQIFEFAEE----------------LDGVS-----------MTVILVGFAQNGFEEEAMQLFVKMVKAG 353 (648)
Q Consensus 305 ----~~~~~~A~~~~~~~~~----------------~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~m~~~~ 353 (648)
..+.....++...... +...+ -+.++..++..-+..+++..-++....-
T Consensus 410 ~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l 489 (1088)
T KOG4318|consen 410 LNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL 489 (1088)
T ss_pred hhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222211 11111 2334555555555555554444443322
Q ss_pred CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C-hh
Q 037816 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----N-SV 425 (648)
Q Consensus 354 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 425 (648)
++ ..|..+|+-++.....+.|..+.++.... .+..+..-+..+.+.+.+.+...++..++.++.+. + ..
T Consensus 490 f~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~ 566 (1088)
T KOG4318|consen 490 FA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI 566 (1088)
T ss_pred hh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH
Confidence 22 67888999999999999999998887643 34566777888999999999999999999888742 1 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHh--ccC
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGV------------------------------EPTDVTFLSLLHACS--HVG 473 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------------------~p~~~~~~~ll~~~~--~~g 473 (648)
+.-.++......|+.+...++.+-+...|+ +|.+.....+.+.+. ...
T Consensus 567 ~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td 646 (1088)
T KOG4318|consen 567 ILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTD 646 (1088)
T ss_pred HHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccc
Confidence 334455555666666666666655554442 222222222322222 112
Q ss_pred cHHHHHHHHHHhH---H------------hcCCC---------------C---------ChhHHHHHHHHhhhcCCHHHH
Q 037816 474 LVNKGMEFLKSMT---E------------VHRIS---------------P---------RAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 474 ~~~~A~~~~~~~~---~------------~~~~~---------------~---------~~~~~~~l~~~~~~~g~~~~A 514 (648)
+++.+..+-.... + ..|+. | .......|+..|.+.|+++.|
T Consensus 647 ~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA 726 (1088)
T KOG4318|consen 647 SPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERA 726 (1088)
T ss_pred cHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHH
Confidence 2333222211111 0 00100 0 011233477789999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 515 RSFIERMPVKPDVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 515 ~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
..+|.++.+.|...+...|...+.+. -++.++....+++.+..|..+. .|.-.+....+....+.|.+.+.+..
T Consensus 727 ~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~e 806 (1088)
T KOG4318|consen 727 SGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLE 806 (1088)
T ss_pred HhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHH
Confidence 99999998888888877777776554 3677777777887776665443 33344444445555558889999988
Q ss_pred hCC
Q 037816 589 EMG 591 (648)
Q Consensus 589 ~~~ 591 (648)
++.
T Consensus 807 eq~ 809 (1088)
T KOG4318|consen 807 EQL 809 (1088)
T ss_pred Hcc
Confidence 873
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.5e-11 Score=124.44 Aligned_cols=279 Identities=11% Similarity=0.038 Sum_probs=187.6
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHhcCCHHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE--SALMDMYSKCGSVEDAW 312 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~ 312 (648)
.|+++.|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555543321111 122333333445566666666666666543 3333222 23356777788888888
Q ss_pred HHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHhccCChhHHHHHHH
Q 037816 313 QIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-------NMVSAVLGVFGVDTSLGLGKQIHS 382 (648)
Q Consensus 313 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 382 (648)
+.++.+.+. ++.....+...|.+.|+|++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888777653 4455667778888888888888888888877654322 123333333334445555666666
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037816 383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462 (648)
Q Consensus 383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 462 (648)
.+.+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+....++.+++++..++..+.. +-|...+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 55432 356777888889999999999999999987764333333334455556689999999999988764 3355667
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
..+...|.+.+++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7888889999999999999999976 4788888889999999999999999998875
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.9e-09 Score=101.41 Aligned_cols=540 Identities=10% Similarity=0.048 Sum_probs=366.2
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
..+...|-.....=...+++..|.++|+.... .+...|--.+..=.++.....|..++++.... -|.....+..-
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 34556666666666667888999999998873 46667777777778888999999999998765 35554456666
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchH
Q 037816 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEE 240 (648)
Q Consensus 163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 240 (648)
+..=-..|++..|.++++.-.+ ..|+...|++.|+.-.+.+.++.|..++++.. .|++.+|--....=.+.|+...
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence 6666677999999999998875 58999999999999999999999999999875 7899999888888889999999
Q ss_pred HHHHHHHHHhCCCCCChh----hHHHHHHHhhccCChHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHH-
Q 037816 241 GLKLFVKMHLGLINPNSL----TYLSSVMACSGLQALCEGRQIHGILWKLALQS-DLCIESALMDMYSKCGSVEDAWQI- 314 (648)
Q Consensus 241 a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~- 314 (648)
|..+|+...+. -.|.. .|.+....=.+...++.|.-+++..++.-... ....|..+...=-+-|+.....+.
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 99999988652 12222 33333333345677888888888887763211 134444444444445655444433
Q ss_pred -------HHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHH---hccCCh
Q 037816 315 -------FEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-------NMVSAVLGVF---GVDTSL 374 (648)
Q Consensus 315 -------~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~ 374 (648)
++.+...|+. +|-..+..--..|+.+...++|++.+.. ++|-. ..|.-+=-+| ....+.
T Consensus 304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2333344444 4444566666779999999999999875 45532 1222222222 356789
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMY----SKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYE 448 (648)
Q Consensus 375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 448 (648)
+.+.++++...+ -+|....++..+--+| .++.++..|.+++.... -|-..+|...|..=.+.++++.+..+++
T Consensus 383 ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888 3455566666554444 46789999999998876 4666778888888888999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 037816 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV 527 (648)
Q Consensus 449 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 527 (648)
+.++-+ +-|..+|......=...|+.+.|..+|.-+.....+......|.+.|+-=...|.+++|..+++++ ...+..
T Consensus 462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999965 336778888887778899999999999999875444445667778888888999999999999998 444555
Q ss_pred HHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc----CCCCC--ccHHHHHHHHHhcCChHHHHHHHH
Q 037816 528 LVWQALLGACS-----IHG-----------DSEMGKYAAEKLFLA----QPDSP--APYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 528 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
.+|-+....-. +.+ ....|..+|+++... .|... .......+.-...|...+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 57766654332 233 567888889888642 33221 122222233334455555554444
Q ss_pred HHHh-----CCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816 586 RMKE-----MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636 (648)
Q Consensus 586 ~m~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 636 (648)
+|.+ ..+..+.|.+ ...+.+.-+...+...+....+-+....+-.++.+
T Consensus 621 ~mPk~vKKrr~~~~edG~~--~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~q~~~ 674 (677)
T KOG1915|consen 621 KMPKKVKKRRKIQREDGDT--EYEEYFDYIFPEDASATKNLKILEAAKKWKKQKAK 674 (677)
T ss_pred hccHHHHhhhhhhcccCch--hHHHHHHhcCccccccCcchHHHHHHHHHHHHHHh
Confidence 4422 1233334421 11111222233333555666666666666555443
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.3e-09 Score=102.08 Aligned_cols=447 Identities=13% Similarity=0.100 Sum_probs=329.0
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhH
Q 037816 130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209 (648)
Q Consensus 130 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 209 (648)
=..++++..|..+|++.+... ..+.. .+..-+..=.+.+.+..|..+++.....-...| ..|-..+..--..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 344678889999999998765 23444 677777777888999999999999887532222 344455555567899999
Q ss_pred HHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh-
Q 037816 210 GRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL- 286 (648)
Q Consensus 210 A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~- 286 (648)
|.++|++-. +|+...|++.|+.=.+-..++.|..+|+..+- +.|+..+|.--.+.=-+.|.+..+..++....+.
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999998775 79999999999999999999999999999976 6699999998888889999999999999988764
Q ss_pred cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CcccHHHHHHHHHHcCCH---HHHHHH-----HHHHHHc
Q 037816 287 AL-QSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-----DGVSMTVILVGFAQNGFE---EEAMQL-----FVKMVKA 352 (648)
Q Consensus 287 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~---~~a~~~-----~~~m~~~ 352 (648)
|- ..+...+.+....=.++..++.|.-+|+-..+. ....|..+...=-+-|+. +.++-- ++.++..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 21 223445555555556677888888888765542 122333333333334443 333322 3344444
Q ss_pred CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHH-----H---HhCCCHHHHHHHHhhcC--
Q 037816 353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINM-----Y---SKCGDLEDSIKVFSRMA-- 420 (648)
Q Consensus 353 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~~~A~~~~~~~~-- 420 (648)
+ +-|-.++-..+..-...|+.+...++|+.++..- ||-. ..|...|.. + ....+++.+.++|+...
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3 5677888888888888999999999999998753 4422 122222221 1 24678888999987654
Q ss_pred -CCChhHHHHH----HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-C
Q 037816 421 -PRNSVSWNSM----IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-R 494 (648)
Q Consensus 421 -~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 494 (648)
+....||.-+ ...-.+..+...|.+++.... |.-|-..+|...|..=.+.++++....++++..+ ..| +
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHh
Confidence 3444555443 344456789999999998876 5679999999999999999999999999999986 345 8
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
..+|......=...|+.+.|..+|+-.-..|. ...|.+.|..-...|.+++|..+|+++++..+... ++.+.+..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 88999999888999999999999998833442 44566667666788999999999999999887754 66666654
Q ss_pred HH-----hcC-----------ChHHHHHHHHHHHh
Q 037816 571 YS-----CSG-----------RWKERAKAIKRMKE 589 (648)
Q Consensus 571 ~~-----~~g-----------~~~~A~~~~~~m~~ 589 (648)
-. ..| ....|..+|++...
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 33 334 56778888887644
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=5.4e-12 Score=125.16 Aligned_cols=279 Identities=13% Similarity=0.061 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHhccC--CCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHH
Q 037816 306 GSVEDAWQIFEFAEE--LDG-VSMTVILVGFAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQI 380 (648)
Q Consensus 306 ~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 380 (648)
-+..+|...|..+.+ .|+ .+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+ +.+...
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 356788888888665 233 344567889999999999999999998753 12356788888876533 222233
Q ss_pred H-HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037816 381 H-SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE 456 (648)
Q Consensus 381 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 456 (648)
+ +.+.+. -+..+.+|.++..+|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 3 333333 3677899999999999999999999999998754 456788888888889999999999999875 33
Q ss_pred CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037816 457 PT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQA 532 (648)
Q Consensus 457 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 532 (648)
|. ...|..+...|.++++++.|.-.|+++.+ +.| +......+...+-+.|+.++|+++++++ ...| |+.+--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 43 34666678889999999999999999975 456 7888888999999999999999999998 4443 4555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 594 (648)
-+..+...+++++|+..++++.+..|++..+|..++..|.+.|+.+.|+.-|--+.+...++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66678889999999999999999999999999999999999999999999988887755433
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=6e-12 Score=124.86 Aligned_cols=279 Identities=12% Similarity=0.102 Sum_probs=216.6
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------CCcccHHHHHHHHHHcCCHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE------LDGVSMTVILVGFAQNGFEEEAMQL 345 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~ 345 (648)
+..+|...|..+... +..+..+...+..+|...+++++|.++|+.+.+ .+...|.+.+..+.+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 455666666663322 233335667788888888899999999888876 255667776655443 222333
Q ss_pred HH-HHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816 346 FV-KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424 (648)
Q Consensus 346 ~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 424 (648)
+. .+.+. -+-.+.+|..+.++|.-.++.+.|.+.|++.++.+ +-..++|+.+.+-+.....+|.|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22 23332 35667899999999999999999999999988765 44788999999999999999999999999887766
Q ss_pred hHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 037816 425 VSWNS---MIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYA 499 (648)
Q Consensus 425 ~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 499 (648)
..||+ |...|.+.++++.|+-.|++..+-+ | +.+....+...+.+.|+.++|+++++++.. +.| |+..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHH
Confidence 65554 6678999999999999999999854 6 566777788888999999999999999976 344 666666
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 500 CVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.-+..+...+++++|+..++++ .+.|+ ...+..+...|.+.|+.+.|+..|--+.+++|.-..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 6777888899999999999999 56676 555777888999999999999999999999997543
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=1.3e-10 Score=118.33 Aligned_cols=220 Identities=10% Similarity=0.002 Sum_probs=108.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH-------HHHHH
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-------GLINM 402 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~ 402 (648)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+..+...... .++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554443 2233344444444555555555555555555444322221111 11111
Q ss_pred HHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHH
Q 037816 403 YSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF---LSLLHACSHVGLVN 476 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~ 476 (648)
-......+...+.+....+ .+...+..+...+...|+.++|.+++++..+.. ||.... ....-.....++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 1112223334444444432 356666666777777777777777777777643 433211 11111123345556
Q ss_pred HHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816 477 KGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSFIER--M-PVKPDVLVWQALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (648)
.+.+.+++..+. .+-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.++++
T Consensus 317 ~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 317 KLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665542 22233 4455566666666666666666662 2 445666555566666666666666666666
Q ss_pred HHH
Q 037816 552 KLF 554 (648)
Q Consensus 552 ~~~ 554 (648)
+.+
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=5.2e-13 Score=128.95 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=81.9
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHH-HHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS-SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 307 (648)
...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 3344444555555555533322221222222222 222233344455555555544443321 33334444444 45666
Q ss_pred HHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816 308 VEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384 (648)
Q Consensus 308 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 384 (648)
+++|.+++...-+ +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666554422 344555566666677777777777777765432 2345555666666666677777777777766
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461 (648)
Q Consensus 385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 461 (648)
.+.. |.+..+...++..+...|+.+++.+++.... +.|...+..+..+|...|+.++|+..+++..+.. +.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 6654 3445666666666666676666555554443 3455566666777777777777777777766643 335666
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
...+..++...|+.++|.++.+++.+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 66666777777777777776666543
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=9.4e-11 Score=119.29 Aligned_cols=283 Identities=13% Similarity=0.035 Sum_probs=193.1
Q ss_pred HCCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 037816 234 QNQLYEEGLKLFVKMHLGLINPNSL-TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312 (648)
Q Consensus 234 ~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 312 (648)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467788888777766543 34432 334445566667888888888877765432222233444577788888899888
Q ss_pred HHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH---hccCChhHHHHHHHHHHH
Q 037816 313 QIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF---GVDTSLGLGKQIHSLIIK 386 (648)
Q Consensus 313 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~ 386 (648)
+.++.+.+. ++.....+...+...|++++|.+.+..+.+.++.+.......-..+. ...+..+.+.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888762 55567778888999999999999999998887543332211111111 222222222334444433
Q ss_pred hC---CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 037816 387 SD---FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458 (648)
Q Consensus 387 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 458 (648)
.. .+.++..+..+...+...|+.++|.+.+++..+ ||... ...........++.+.+.+.+++..+. .|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence 32 124788888999999999999999999998864 33321 122222233457788899999888875 354
Q ss_pred -H--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 459 -D--VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 459 -~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
. ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 45667888999999999999999964442 56799988999999999999999999999875
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=6.5e-10 Score=104.10 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=201.7
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 314 (648)
.|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.+.-+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888877766655433 3345556666677777777777777777664456666666777777777777777766
Q ss_pred HHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 037816 315 FEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391 (648)
Q Consensus 315 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (648)
.+.+.+ .++........+|.+.|+|.....++.+|.+.|.-.++..-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 665544 455666677777778888888888887777776544332100 0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+...|+.++|.++..+..+++..|+ -...-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 12344555555555555555555666665 34667777788888889999999999998888876666 122234
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
+.+.++...-++..++-.+. .+.++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|+-+..++.+.|+.+.|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 56777887777777777764 3345578888889999999999999998877 77888999999999999999999998
Q ss_pred HHHHHHHh
Q 037816 548 YAAEKLFL 555 (648)
Q Consensus 548 ~~~~~~~~ 555 (648)
+..++.+.
T Consensus 382 ~~r~e~L~ 389 (400)
T COG3071 382 QVRREALL 389 (400)
T ss_pred HHHHHHHH
Confidence 88888764
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=4.5e-08 Score=97.01 Aligned_cols=549 Identities=14% Similarity=0.090 Sum_probs=345.5
Q ss_pred ccccCCcchhHhhHhHHhhccccCCCccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCC
Q 037816 8 LKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPN 87 (648)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 87 (648)
+.++++..+|-.+-+.+-++-..-- - =+.-+..-+.....+|++..-+.+|...+..++. ..
T Consensus 75 k~~~~T~~~~~~vn~c~er~lv~mH--------k-mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---------tq 136 (835)
T KOG2047|consen 75 KHLCPTDPAYESVNNCFERCLVFMH--------K-MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV---------TQ 136 (835)
T ss_pred hccCCCChHHHHHHHHHHHHHHHHh--------c-CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---------Hh
Confidence 3446666666665554443311000 0 1234556667778899999999999999998422 22
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-----CCCCcHhHHHHH
Q 037816 88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-----FYQLDQASFTII 162 (648)
Q Consensus 88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~~l 162 (648)
-..+|.-.+......|-++.+.++++...+-++..-+..|..++..++.++|-+.+....... ..+++...|..+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 346888999999999999999999999887777778899999999999999999998876432 124444467666
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHhHhcCChhHHHHHhcccCCC--CcccHHHHHHHHHHC-
Q 037816 163 LSACDRSELSLVSKMIHCLVYLCGY--EEE--VTVGNALITSYFKCGSSSSGRKVFGEMRVR--NVITWTAVISGLVQN- 235 (648)
Q Consensus 163 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~- 235 (648)
-.......+.-....+- .+.+.|+ -+| ...|..|.+-|.+.|.+++|.+++++.... .+.-+..+.++|+.-
T Consensus 217 cdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence 66666554443333332 2223332 234 357899999999999999999999887632 222344444443321
Q ss_pred ---------------CC------chHHHHHHHHHHhCCC--------CCChhhHHHHHH-HhhccCChHHHHHHHHHHHH
Q 037816 236 ---------------QL------YEEGLKLFVKMHLGLI--------NPNSLTYLSSVM-ACSGLQALCEGRQIHGILWK 285 (648)
Q Consensus 236 ---------------g~------~~~a~~~~~~m~~~~~--------~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~ 285 (648)
|+ ++-...-|+.+...+. ..|.......++ .-...|+..+....+.+..+
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH
Confidence 11 1222333444333210 011111111111 11234566677777777765
Q ss_pred hc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHH-------HHHHHHcCCHHHHHHHHHHHHHcC
Q 037816 286 LA-----LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI-------LVGFAQNGFEEEAMQLFVKMVKAG 353 (648)
Q Consensus 286 ~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~ 353 (648)
.- ...-...|..+.+.|-..|+++.|..+|++..+-+-.+-+-| ...=.+..+++.|+.+.++.....
T Consensus 376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 42 111235688899999999999999999999887544443333 344456678888998887765321
Q ss_pred CC-----------c------CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 037816 354 IE-----------I------DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF 416 (648)
Q Consensus 354 ~~-----------p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (648)
-. + +...|...+..--..|-++....+++.+.+..+.. +.+.....-.+-...-++++.++|
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11 1 22344445555556778888999999999877533 333333333445666789999999
Q ss_pred hhcCC----CCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhH
Q 037816 417 SRMAP----RNS-VSWNSMIAAFAR---HGNGFKALELYEEMKLEGVEPTDVTFLSLLHA--CSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 417 ~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~ 486 (648)
++-.+ |++ ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-+ =-+.|....|+.+++++.
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88653 343 467776665554 2468999999999998 677755433333322 245688889999999987
Q ss_pred HhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHhcCCC-
Q 037816 487 EVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG---ACSIHGDSEMGKYAAEKLFLAQPD- 559 (648)
Q Consensus 487 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~- 559 (648)
. ++++ -...|+..|.--...=-+..-..+|++. ..-||...-...++ .-.+.|..++|..++.-..+..++
T Consensus 614 ~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 614 S--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred h--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 6 5666 3456777776544333333444455544 33455544433333 235679999999999888877654
Q ss_pred -CCccHHHHHHHHHhcCChHH
Q 037816 560 -SPAPYILMANIYSCSGRWKE 579 (648)
Q Consensus 560 -~~~~~~~l~~~~~~~g~~~~ 579 (648)
++..|...-..-.+.|+-+.
T Consensus 692 ~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHH
Confidence 34566666666667788433
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=3.5e-10 Score=102.58 Aligned_cols=216 Identities=14% Similarity=0.124 Sum_probs=122.1
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc-CCCc--hhHHHHHHHHHHhcCCHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSD--LCIESALMDMYSKCGSVEDA 311 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A 311 (648)
.+++++|.++|-+|.+. -+.+..+-.++-+.+.+.|..|.|+++.+.+.++. ++.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46778888888888662 12233344566667777777777777777776542 2222 22335567778888888888
Q ss_pred HHHHHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHH
Q 037816 312 WQIFEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLI 384 (648)
Q Consensus 312 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~ 384 (648)
+++|..+.+.+.. ....|+..|....+|++|++.-+++...+-.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888888774333 4455788888888888888888888876654443 23333444444445555555555555
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS----VSWNSMIAAFARHGNGFKALELYEEMKL 452 (648)
Q Consensus 385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 452 (648)
.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++....+.++.+
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4433 22222223334444444444444444444443322 1233334444444444444444444443
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.6e-09 Score=102.32 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=171.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 037816 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412 (648)
Q Consensus 333 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (648)
+.-.|+.-.|...|+..+.....++. .|--+..+|....+.++....|+...+.+ +-++.+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44568888889999988887544333 26667777888899999999999988877 66777888888888888999999
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816 413 IKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489 (648)
Q Consensus 413 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 489 (648)
..=|++..+ .++..|-.+..+.-+.+++++++..|++..++ ++.-+..|+.....+...++++.|.+.|+...+.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 999998764 35567777777777889999999999999876 4556788999999999999999999999999763
Q ss_pred CCCCC---------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 490 RISPR---------AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 490 ~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
.|. +.+...++..- -.+++..|.+++++. .+.|- ...|..|...-.+.|+.++|+++|++...+
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 332 22223333333 348999999999998 66664 556888999999999999999999998755
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=9.4e-10 Score=99.82 Aligned_cols=298 Identities=12% Similarity=0.112 Sum_probs=172.5
Q ss_pred cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHH-------HHHHHHHHcCCHHHH
Q 037816 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT-------VILVGFAQNGFEEEA 342 (648)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a 342 (648)
+.+.++|.+.|-+|.+.. +.+..+--+|.+.|-+.|.+|.|+++-..+.+....|++ .|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345566666666665522 233334455666666666666666666655543333322 233445555556666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 037816 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422 (648)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (648)
..+|..+.+.+ ..-....-.|+..|-...+|++|.+.-.++.+.+-.+...- +
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---I----------------------- 179 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---I----------------------- 179 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---H-----------------------
Confidence 66665555433 22223334444444444444444444444443332211100 0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
...|.-|...+....+.+.|..++.+..+.+ |+. ..-..+.+.....|+++.|.+.++.+.+. +..--+.+...|
T Consensus 180 -AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L 255 (389)
T COG2956 180 -AQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEML 255 (389)
T ss_pred -HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence 1234445555556677888888888877754 432 23334556677888888888888888775 555567778888
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH-HH--hcCCh
Q 037816 502 VDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI-YS--CSGRW 577 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~ 577 (648)
..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.-. .+..++.. .. .-|++
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccch
Confidence 88888888888888888777 4444444444455544555566777777777777777653 44444443 33 33568
Q ss_pred HHHHHHHHHHHhCCCCCCCceeE
Q 037816 578 KERAKAIKRMKEMGVDKETGISW 600 (648)
Q Consensus 578 ~~A~~~~~~m~~~~~~~~~~~~~ 600 (648)
.+....+++|....++..+....
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCcee
Confidence 88888888888877766664333
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.2e-10 Score=109.52 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=165.8
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 467 (648)
.....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 335667778888999999999999998765 2356678888889999999999999999998864 345667778888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 545 (648)
.+...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999874222335567778889999999999999999988 4444 46678888899999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888888888889999999999999999998887653
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=2.7e-09 Score=100.06 Aligned_cols=278 Identities=10% Similarity=0.080 Sum_probs=196.9
Q ss_pred cCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816 305 CGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381 (648)
Q Consensus 305 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 381 (648)
.|++.+|+++..+-.+. ....|..-..+-.+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46666666666654432 222333444455666777777777777766533445555555566666777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----------NSVSWNSMIAAFARHGNGFKALELYEEM 450 (648)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m 450 (648)
..+.+.+ +-++.+.....++|.+.|++.....++..+.+. -..+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777665 556667777778888888888888888777643 1246777777766666666666677766
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHH
Q 037816 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVL 528 (648)
Q Consensus 451 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 528 (648)
-.. .+.++..-..++.-+.+.|+.++|.++..+..++ +..|+. ..+ -...+-++.+.-++..+.. ....++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 543 4566777778888899999999999999999886 777762 222 2344556665555555444 1222347
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+.+|...|.+.+.+.+|..+++.+++..|. ...|..++.++...|+..+|.+..++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7889999999999999999999999998887 489999999999999999999999987743
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.35 E-value=1e-07 Score=94.64 Aligned_cols=293 Identities=14% Similarity=0.100 Sum_probs=164.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----------CCC
Q 037816 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-----------FTS 391 (648)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~ 391 (648)
|..+...|-.+|+.+.|..+|++..+-..+.- ..+|......-.+..+++.|..+++.+.... .++
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 55566666667777777777766655332211 2233333333345555666666655543211 111
Q ss_pred ------chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHH-H
Q 037816 392 ------NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI---AAFARHGNGFKALELYEEMKLEGVEPTDV-T 461 (648)
Q Consensus 392 ------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~ 461 (648)
+..+|..+++.--..|-++....+|+++..--+.|=..++ ..+-.+.-++++.+++++-...=-.|+.. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di 549 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI 549 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence 1223333344444455666666666665432211111111 12233444666766666655443345543 4
Q ss_pred HHHHHHHHh---ccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHH
Q 037816 462 FLSLLHACS---HVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSFIERM--PVKPD--VLVWQA 532 (648)
Q Consensus 462 ~~~ll~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ 532 (648)
|+..+.-+. ....++.|..+|++..+ +.+|.. ..|-.....=-+.|-...|++++++. ++++. ...|+.
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555554442 23478999999999988 777632 22333333334568888999999998 44443 455777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCc--cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CceeEEEEcCEEEE
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPA--PYILMANIYSCSGRWKERAKAIKRMKEMGVDKE-TGISWIEIEKQVHS 609 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~ 609 (648)
.|.-....=-+..-..+|+++++.-|++.. .....++.-.+.|..+.|..++..-.+- ..|. .+-.| .+
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW-------~t 699 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFW-------DT 699 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHH-------HH
Confidence 776555544455667899999998887532 2334566677889999999998775543 2232 23334 22
Q ss_pred EEeCCCCCCChHHHHHHHH
Q 037816 610 FVVDDKMHPQADTIHGVLA 628 (648)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~ 628 (648)
|-.=+..|.+...+.++|+
T Consensus 700 wk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 700 WKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 2222457777777777775
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.8e-08 Score=102.15 Aligned_cols=400 Identities=13% Similarity=0.073 Sum_probs=267.7
Q ss_pred hCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhH
Q 037816 185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTY 260 (648)
Q Consensus 185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~ 260 (648)
..+..|..+|..|.-+..+.|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++.-....-.|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 44677889999999999999999999999998763 2445788888999999999999999988755433343 3344
Q ss_pred HHHHHHhh-ccCChHHHHHHHHHHHHh--cC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhccCC---
Q 037816 261 LSSVMACS-GLQALCEGRQIHGILWKL--AL--QSDLCIESALMDMYSKC-----------GSVEDAWQIFEFAEEL--- 321 (648)
Q Consensus 261 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~--- 321 (648)
...-..|. +.+..+++..+...+... +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444453 346777777776666652 21 22333444444444432 1234556666666543
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCchhHHHHHH
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLI 400 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li 400 (648)
|+.+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.... .|. |-.....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 33333333445778899999999999999987678888898888889999999999999877653 321 100000111
Q ss_pred HHHHhCCCHHHHHHHHhhc--------------------------C----CC--ChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816 401 NMYSKCGDLEDSIKVFSRM--------------------------A----PR--NSVSWNSMIAAFARHGNGFKALELYE 448 (648)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~--------------------------~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 448 (648)
+.-...++.+++......+ . ++ .+.++..+..-.... ...+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccccc
Confidence 1111233444433322111 1 00 122232222211111 111100000
Q ss_pred HHHHcCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816 449 EMKLEGVEP--TD------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520 (648)
Q Consensus 449 ~m~~~~~~p--~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (648)
|...-+.| +. ..|......+...+..++|...+.++.+ ..+.....|......+...|.+++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 22111222 21 2244455667888999999999999976 3455788888888999999999999999988
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 521 M-PVKPD-VLVWQALLGACSIHGDSEMGKY--AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 521 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
. .+.|+ +.+..++...+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+..
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 7 67775 7788999999999999888888 9999999999999999999999999999999999999987653
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4.2e-08 Score=96.49 Aligned_cols=377 Identities=12% Similarity=0.110 Sum_probs=211.0
Q ss_pred hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHH
Q 037816 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHG 281 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 281 (648)
+.+..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-... . -.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQ 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HH
Confidence 566777777777744444444555555667777777777777777765443211 11111111111000 0 00
Q ss_pred HHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCcc----------cHHHHHHHHHHcCCHHH
Q 037816 282 ILWKLALQSD--LCIESALMDMYSKCGSVEDAWQIFEFAE--------ELDGV----------SMTVILVGFAQNGFEEE 341 (648)
Q Consensus 282 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~~~ 341 (648)
.+......|+ -..+-.....++..|++.+|+++++... +.|.. .-..|.-.+...|+..+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1222222221 1111223445566778888887777661 11111 11234456778899999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHH---HHHhccCChhH--HHHHHHH-----------HHHhCCCCchhHHHHHHHHHHh
Q 037816 342 AMQLFVKMVKAGIEIDPNMVSAVL---GVFGVDTSLGL--GKQIHSL-----------IIKSDFTSNPFVNNGLINMYSK 405 (648)
Q Consensus 342 a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~ 405 (648)
|..++...+... ++|........ .++....++-. +...++. +....-......-+.++..|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-- 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999998875 44443322222 22222222111 1111111 11111011111222333333
Q ss_pred CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816 406 CGDLEDSIKVFSRMAPR-NSVSWNSMIAAFAR--HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482 (648)
Q Consensus 406 ~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 482 (648)
.+..+.+.++....... ....+.+++....+ ...+..|.+++...-+....-........+......|+++.|.+++
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 35566777777666643 24445555544332 3357788888888776541122345555667778999999999999
Q ss_pred H--------HhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHHcCChHH
Q 037816 483 K--------SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVL----VWQALLGACSIHGDSEM 545 (648)
Q Consensus 483 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~ 545 (648)
. .+.+ +...+.+...+...|.+.++-+-|..++.+. ...+... ++.-+...-.+.|+.++
T Consensus 400 ~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9 4432 3446677788888899988877777777655 1122222 33333444567899999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 599 (648)
|..+++++++.+|++..+...++.+|++. +.+.|..+-++ +.|..+..
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~-----L~p~~~l~ 524 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK-----LPPLKGLK 524 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc-----CCCcccch
Confidence 99999999999999999999999999774 56677665444 44554444
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=3.2e-09 Score=97.43 Aligned_cols=443 Identities=10% Similarity=0.062 Sum_probs=219.6
Q ss_pred HHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHH
Q 037816 51 LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMV 127 (648)
Q Consensus 51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li 127 (648)
+.-+...+|+..|..+++.-... +- .....+---+..++.+.|++++|...+..+.+ ++...+-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~--~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA 98 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNL--DR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA 98 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhcc--ch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH
Confidence 55666778889999888877654 32 22223333455677888999999999887763 4555666676
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 037816 128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207 (648)
Q Consensus 128 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 207 (648)
-++.-.|.+.+|..+-... |+.+..-..++...-+.++.+....++..+... .+---+|.+..--.-.+
T Consensus 99 cc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 99 CCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHY 167 (557)
T ss_pred HHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHH
Confidence 6777778888888776654 444423344455555667777666666655431 22223344444444567
Q ss_pred hHHHHHhcccCC--CCcccHHHH-HHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh--ccCChHHHHHHHHH
Q 037816 208 SSGRKVFGEMRV--RNVITWTAV-ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGI 282 (648)
Q Consensus 208 ~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~ 282 (648)
++|.+++.++.. |+-...|.- .-.|.+..-++-+.++++-..+. .||. |+..-+.+|. +.=+-..|+.-.+.
T Consensus 168 QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ 244 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKE 244 (557)
T ss_pred HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHH
Confidence 888888888764 333344433 34556667777777777776542 2443 2222233332 22111222222222
Q ss_pred HHHhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 037816 283 LWKLALQSDLCIESALMDMYSKC-----GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID 357 (648)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 357 (648)
+.+.+-.. -..+.-.++. .+-+.|++++-.+.+.=+..--.|+--|.++++..+|..+.+++.. ..|-
T Consensus 245 ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~ 317 (557)
T KOG3785|consen 245 LADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPY 317 (557)
T ss_pred HHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChH
Confidence 22222110 0111222222 1224455554444333333333445556777777777777665521 1222
Q ss_pred HHHHHHHHHHHh-----ccCChhHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhHH
Q 037816 358 PNMVSAVLGVFG-----VDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAP----RNSVSW 427 (648)
Q Consensus 358 ~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 427 (648)
......+..+.. ....+..|.+.|+..-.++..-|+. --.++...+.-..++++++-.+..+.. .|...+
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222222111 1112344444444443333322221 122333444444455555555555442 233333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHh
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS-LLHACSHVGLVNKGMEFLKSMTEVHRISPRAE-HYACVVDMV 505 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 505 (648)
| +..+++..|.+.+|+++|-+...-.++ |..+|.+ |.++|.+.+.++.|+.++-++ +-+.+.. ....+..-|
T Consensus 398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~----~t~~e~fsLLqlIAn~C 471 (557)
T KOG3785|consen 398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT----NTPSERFSLLQLIANDC 471 (557)
T ss_pred H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc----CCchhHHHHHHHHHHHH
Confidence 3 455555666666666665554432222 2333333 334555666666665555443 1122222 222333445
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037816 506 GRAGLLIEARSFIERM-PVKPDVLVW 530 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~~~~~ 530 (648)
.+++.+--|.+.|+.+ ...|++..|
T Consensus 472 Yk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 472 YKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHHHHHHHHHhhhHHHccCCCcccc
Confidence 5555555555555555 344555544
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=8.9e-08 Score=88.14 Aligned_cols=180 Identities=8% Similarity=0.014 Sum_probs=88.0
Q ss_pred HHHHhcCCChhHHHHhhccCCCC---Cc-ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCC
Q 037816 96 LSFYLKCDQMRNAVKLFDDMPMR---DT-VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL 171 (648)
Q Consensus 96 i~~~~~~g~~~~A~~~~~~~~~~---~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~ 171 (648)
+.-+....++..|+.+++.-..- .. .+---+..++.+.|++++|+..|.-+.+.. .|+.. ....|.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~e-l~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAE-LGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcc-cchhHHHHHHHHHH
Confidence 34444567777777776654411 11 112223445666777777777777766543 34444 55555555555566
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC
Q 037816 172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG 251 (648)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 251 (648)
+.+|+.+-+.. +.++..-..|++.-.+.++-++-..+-+.+.... .---+|.......-.+++|+++|++....
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666554332 2233333344444555566555555544443221 11122233333334566777777666542
Q ss_pred CCCCChhhHHHHH-HHhhccCChHHHHHHHHHHHH
Q 037816 252 LINPNSLTYLSSV-MACSGLQALCEGRQIHGILWK 285 (648)
Q Consensus 252 ~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~ 285 (648)
+ |+-...+.-+ -++.+..-++-+.++++..++
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 2 3333333222 233445555555555554443
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.3e-08 Score=92.06 Aligned_cols=304 Identities=11% Similarity=0.009 Sum_probs=204.8
Q ss_pred CCChhhHHHHHHHhhcc--CChHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH--
Q 037816 254 NPNSLTYLSSVMACSGL--QALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV-- 328 (648)
Q Consensus 254 ~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 328 (648)
.|...+....+.+++.. ++-..+...+-.+.. .-++.|......+..++...|+.++|+..|+...--|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 34444444555554433 333333333333333 2356778888888999999999999999998877655544333
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816 329 -ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 329 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (648)
..-.+...|+.+....+...+.... .-+...|-.-.......+++..|..+-.+.++.+ +.+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 2334567788887777777765532 1222223223333445667788888777777654 344555555566777888
Q ss_pred CHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHH
Q 037816 408 DLEDSIKVFSRMA--P-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL-HACS-HVGLVNKGMEFL 482 (648)
Q Consensus 408 ~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~A~~~~ 482 (648)
+.++|.--|+... . -+...|..|+.+|...|++.+|.-.-....+. ++.+..+...+. ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 8888888887654 3 47788999999999999998888877765553 345666665552 3332 223346788888
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 483 KSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 483 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
++..+ +.| -....+.+...+...|..++++.++++. ...||....+.|...+...+.+.+|...|..+++.+|.+
T Consensus 428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 87754 355 3556677788888889999999988887 777888888888888888889999999999999998887
Q ss_pred Ccc
Q 037816 561 PAP 563 (648)
Q Consensus 561 ~~~ 563 (648)
..+
T Consensus 505 ~~s 507 (564)
T KOG1174|consen 505 KRT 507 (564)
T ss_pred hHH
Confidence 543
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.4e-08 Score=97.74 Aligned_cols=471 Identities=10% Similarity=-0.012 Sum_probs=217.5
Q ss_pred cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhcc
Q 037816 35 STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD 114 (648)
Q Consensus 35 ~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 114 (648)
+-.|+.- ||...--+.+++.-.|+...|..+.+.-.-. ..|.....-...++.+..++++|..++..
T Consensus 41 kV~~l~~-dp~d~~~~aq~l~~~~~y~ra~~lit~~~le------------~~d~~cryL~~~~l~~lk~~~~al~vl~~ 107 (611)
T KOG1173|consen 41 KVAGLTN-DPADIYWLAQVLYLGRQYERAAHLITTYKLE------------KRDIACRYLAAKCLVKLKEWDQALLVLGR 107 (611)
T ss_pred HHHhccC-ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556665 7777778888888889999988888777544 56778888888899999999999999984
Q ss_pred CCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhH
Q 037816 115 MPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193 (648)
Q Consensus 115 ~~~-~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (648)
-+. .++..|..-=. ...-..+.+.+....-.+.+ .+..--+.+...++.+.|+..+...+.. |...
T Consensus 108 ~~~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~ess-------ic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c 174 (611)
T KOG1173|consen 108 GHVETNPFSYYEKDA--ANTLELNSAGEDLMINLESS-------ICYLRGKVYVALDNREEARDKYKEALLA----DAKC 174 (611)
T ss_pred cchhhcchhhcchhh--hceeccCcccccccccchhc-------eeeeeeehhhhhccHHHHHHHHHHHHhc----chhh
Confidence 421 01111100000 00000011110000000001 0111111223333444444444443322 1222
Q ss_pred HHHHHHHhHhc-CChhHHHHHhcccC-----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 037816 194 GNALITSYFKC-GSSSSGRKVFGEMR-----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267 (648)
Q Consensus 194 ~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 267 (648)
+.++...-... =-.++-..+|+... ..++.....+.........-+.....-.+-.-.+..-+......-..-|
T Consensus 175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~ 254 (611)
T KOG1173|consen 175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL 254 (611)
T ss_pred HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence 22111111000 00011122222211 0011111111110000000000000000000011222333333334444
Q ss_pred hccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHH
Q 037816 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQ 344 (648)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 344 (648)
-..+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+ ..+.+|-++.--|...|+..+|.+
T Consensus 255 y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 45556666666665555543 33333333334444444444433333333332 133445555555555555555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---
Q 037816 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--- 421 (648)
Q Consensus 345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 421 (648)
.|.+.... + +.-...|-...+.|.-.|.-++|+..+....+
T Consensus 334 y~SKat~l-----------------------------------D-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 334 YFSKATTL-----------------------------------D-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHHHhhc-----------------------------------C-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 55544332 1 11122344444444555555555444433221
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC----CCh
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RIS----PRA 495 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~ 495 (648)
.....+--+..-|.+.++.+-|.++|.+... +-| |+..++-+.-.....+.+.+|..+|+.....- .+. -..
T Consensus 378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred CCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 1111122233345556666666666666655 334 44555555545555666677777666665210 011 123
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
.+++.|..+|.+.+++++|+..+++. -...|..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|..+
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 34666777777777777777777766 2233566677777777777777777777777777777775555444433
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=2.4e-09 Score=113.29 Aligned_cols=244 Identities=11% Similarity=0.001 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHh---------ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816 338 FEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFG---------VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 338 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (648)
..++|...|++..+.. |+ ...+..+..++. ..+++++|...++++.+.+ +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 4568888888887753 43 344444433332 2345788999999888876 567788888888899999
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 037816 408 DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLK 483 (648)
Q Consensus 408 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 483 (648)
++++|...|++..+ .+...+..+...+...|++++|+..+++..+.. |+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998753 356678888899999999999999999999854 543 333344555667899999999999
Q ss_pred HhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 484 SMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 484 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
++.+. .+| ++..+..+..+|...|++++|...++++ ...|+... .+.+...|...| +.|...++++.+..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98763 334 5666788889999999999999999988 55565444 455555667777 47888788776543322
Q ss_pred CccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 561 PAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 561 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
+.-......+|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22233366677888898888877 8887765
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=4.8e-09 Score=105.65 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C-
Q 037816 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-----D-FTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAP-------R- 422 (648)
Q Consensus 358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 422 (648)
..+...+...|...|+++.|..+++...+. | ..|.. .+.+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355666777788888888888887766643 2 12222 2233466788888898888888887642 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 037816 423 ---NSVSWNSMIAAFARHGNGFKALELYEEMKL---E--GV-EPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-- 490 (648)
Q Consensus 423 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-- 490 (648)
-..+++.|..+|.+.|++++|...+++..+ + |. .|.. ..++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234677788889999999988888877653 1 21 1222 2356667778999999999999998776433
Q ss_pred CCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Q 037816 491 ISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL- 555 (648)
Q Consensus 491 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 555 (648)
+.+ -..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+.+++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 3467899999999999999999999887 11222 55678888899999999999998888764
Q ss_pred ---cCC---CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 556 ---AQP---DSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 556 ---~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..| +-..+|..|+.+|.++|++++|.++.++...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 233 4456889999999999999999999998763
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.6e-11 Score=81.70 Aligned_cols=50 Identities=34% Similarity=0.502 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 037816 220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269 (648)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 269 (648)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999888864
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=8.5e-09 Score=96.92 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~-------------- 96 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P-------------- 96 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C--------------
Confidence 45555566666666666666666665442 2223344444444444444444444444444332 1
Q ss_pred hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 037816 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLK 483 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~ 483 (648)
.+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|...++
T Consensus 97 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 97 -----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233344445555555666666666666655432112 23344555566666677777777777
Q ss_pred HhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
+..+. .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 160 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 160 RALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66652 2234556666666777777777777776665 22 223455555566666677777777766666544
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.7e-10 Score=99.98 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=177.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 037816 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHG 438 (648)
Q Consensus 362 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 438 (648)
..+..+|.+.|.+.+|.+.++...+. .|.+.+|-.|-..|.+..+++.|+.+|.+..+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45666677777777777776665554 35566677777888888888888888887663 3 4444455667777888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 518 (648)
+.++|.++++...+.. ..+......+...|...++++.|+++|+++.+. |+ -++..|+.+.-+|.-.++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8999999999888764 446667777777888889999999999999885 54 47778888888888889999998888
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 519 ERM---PVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 519 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++. ...|+ ...|-.+.......||+..|.+.|+-++..+|++..+++.++-.-.+.|++++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 877 22343 5668888888889999999999999999999999999999999999999999999999988764
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=7.4e-11 Score=79.49 Aligned_cols=50 Identities=28% Similarity=0.572 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999988874
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=5.5e-09 Score=110.60 Aligned_cols=211 Identities=10% Similarity=0.041 Sum_probs=165.1
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh
Q 037816 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS---------KCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNG 440 (648)
Q Consensus 373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 440 (648)
+.++|...+++..+.. |.+...+..+..+|. ..+++++|...+++..+ .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4678889999888765 444556666655544 23458899999988763 3677888888889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEARSFIE 519 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (648)
++|...+++..+.+ +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999865 335667888888999999999999999999874 453 3334445556777899999999998
Q ss_pred hC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 520 RM--PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 520 ~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+. ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 87 22354 5557777888899999999999999998888888888888888888888 4888888887664
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.15 E-value=1.3e-06 Score=89.62 Aligned_cols=253 Identities=13% Similarity=0.123 Sum_probs=137.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406 (648)
Q Consensus 327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (648)
..+...|...|++++|++++++.+++. +.....|..-...+-+.|++.+|.+.++.....+ ..|..+-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 334555666677777777777666653 2235556666666667777777777777766655 45556666666677777
Q ss_pred CCHHHHHHHHhhcCCCChh----------HH--HHHHHHHHHcCChHHHHHHHHHHHHc--CC---C----------CCH
Q 037816 407 GDLEDSIKVFSRMAPRNSV----------SW--NSMIAAFARHGNGFKALELYEEMKLE--GV---E----------PTD 459 (648)
Q Consensus 407 g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~A~~~~~~m~~~--~~---~----------p~~ 459 (648)
|+.++|.+++....+++.. .| .....+|.+.|++..|++.|....+. .+ + .+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~ 355 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTL 355 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccH
Confidence 7777777777666543311 11 22355677777777777666655432 01 1 222
Q ss_pred HHHHHHHHHHhccC-------cHHHHHHHHHHhHHhcCCCCC-----------hhHHHHHHHHh---hhcCCHHHHHHHH
Q 037816 460 VTFLSLLHACSHVG-------LVNKGMEFLKSMTEVHRISPR-----------AEHYACVVDMV---GRAGLLIEARSFI 518 (648)
Q Consensus 460 ~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~---~~~g~~~~A~~~~ 518 (648)
.+|..+++..-+.. -...|.++|-.+......... ..--..+..-. .+...-+++...-
T Consensus 356 r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~ 435 (517)
T PF12569_consen 356 RAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAA 435 (517)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23333333221111 112344555444332100000 00001111100 1111111121111
Q ss_pred H-----------hC------CCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816 519 E-----------RM------PVKPDVLVWQALLGACSIH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580 (648)
Q Consensus 519 ~-----------~~------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 580 (648)
. .. +..||+. ..-+.+. .=.++|.++++-+.+..|++..+|.....+|.+.|++--|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLa 510 (517)
T PF12569_consen 436 KKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLA 510 (517)
T ss_pred hhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHH
Confidence 0 00 1223332 2223333 4578899999999999999999999999999999999999
Q ss_pred HHHHHH
Q 037816 581 AKAIKR 586 (648)
Q Consensus 581 ~~~~~~ 586 (648)
++.+.+
T Consensus 511 LqaL~k 516 (517)
T PF12569_consen 511 LQALKK 516 (517)
T ss_pred HHHHHh
Confidence 887764
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=6.4e-08 Score=97.66 Aligned_cols=200 Identities=12% Similarity=0.149 Sum_probs=128.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 037816 328 VILVGFAQNGFEEEAMQLFVKMVKA-----GI-EI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400 (648)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 400 (648)
.+...|...+++++|..+|+++... |- .| -..++..|..+|.+.|++++|...++.+.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------- 311 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------- 311 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence 3556778888888888888887642 10 11 112333333344444444444444433221
Q ss_pred HHHHhCCCHHHHHHHHhhcC---CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Q 037816 401 NMYSKCGDLEDSIKVFSRMA---PRNS-VSWNSMIAAFARHGNGFKALELYEEMKLE---GVEPT----DVTFLSLLHAC 469 (648)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~ 469 (648)
+++... .+.+ ..++.+...++..+++++|..+++...+. -+.++ ..+++.|...|
T Consensus 312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 111100 1111 23445566677777888888777765532 12232 35788888999
Q ss_pred hccCcHHHHHHHHHHhHHhc----C-CCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVH----R-ISP-RAEHYACVVDMVGRAGLLIEARSFIERM--------PVKPD-VLVWQALL 534 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~ 534 (648)
...|++++|.++++++.+.. + ..+ ....++.|...|.+.++..+|.++|.+. +..|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999999999887642 1 122 3456778888899999988888888775 23455 56799999
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 037816 535 GACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~ 555 (648)
..|...|+++.|+++.+.+..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999998873
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.4e-06 Score=87.01 Aligned_cols=453 Identities=10% Similarity=0.026 Sum_probs=283.3
Q ss_pred chHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCC---Ccc
Q 037816 45 VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTV 121 (648)
Q Consensus 45 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 121 (648)
..|-.++.+| ..+.+..+....+.+.+. + +--..+.....-.+...|+-++|......-.+. +.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k---~--------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v 76 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK---F--------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV 76 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh---C--------CccchhHHhccchhhcccchHHHHHHHHHHhccCcccch
Confidence 3455566555 466888888888888887 2 333445555555667789999999988876643 566
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 201 (648)
+|..+.-.+-...++++|+..|......+ ||+...+..+.-.-++.|+++..........+.. +.....|..+..++
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQ 153 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 78888877778889999999999988865 8887678777777778888888777777776643 44456788888888
Q ss_pred HhcCChhHHHHHhcccCC-----CCcccHHHH------HHHHHHCCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHhhc
Q 037816 202 FKCGSSSSGRKVFGEMRV-----RNVITWTAV------ISGLVQNQLYEEGLKLFVKMHLGLINPNSLT-YLSSVMACSG 269 (648)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~ 269 (648)
.-.|+...|..++++..+ ++...|.-. .....++|.+++|++.+..-... + .|... -.+-...+.+
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHH
Confidence 888999999988877652 333333322 24556778888888877665321 1 22222 2233445667
Q ss_pred cCChHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcC-CHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHH
Q 037816 270 LQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCG-SVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQ 344 (648)
Q Consensus 270 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 344 (648)
.+++++|..++..++..+ ||..-| -.+..++.+.. ..+....+|....+. ....-..=++......-.+..-.
T Consensus 232 l~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdk 309 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDK 309 (700)
T ss_pred HhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHH
Confidence 889999999999888774 444444 44444444333 333333556555431 00000000111111222344455
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH----HhC----------CCCchhHHH--HHHHHHHhCCC
Q 037816 345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII----KSD----------FTSNPFVNN--GLINMYSKCGD 408 (648)
Q Consensus 345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~ 408 (648)
++..+.+.|+++-...+..+ +-.....+-.+++...+. ..| -+|++..|+ .++..+-+.|+
T Consensus 310 yL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 66777777776543333332 222111111111111111 111 145554444 56777888999
Q ss_pred HHHHHHHHhhcCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816 409 LEDSIKVFSRMAPRNSVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 409 ~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
++.|...++.....++.. |-.=.+.+...|++++|..++++..+.+ .||...-..-.....+.+..++|.++....
T Consensus 387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999999887654443 3334577888999999999999988865 456555445666677888999999998888
Q ss_pred HHhcCCCC-----ChhH-HHH--HHHHhhhcCCHHHHHHHHHhC
Q 037816 486 TEVHRISP-----RAEH-YAC--VVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 486 ~~~~~~~~-----~~~~-~~~--l~~~~~~~g~~~~A~~~~~~~ 521 (648)
.+. |... +... |-. =..+|.+.|++..|++=|..+
T Consensus 466 Tr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 466 TRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 774 5411 1111 111 134678888888887766655
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.1e-06 Score=87.81 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=81.6
Q ss_pred CCChhHH--HHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 492 SPRAEHY--ACVVDMVGRAGLLIEARSFIERM-PVKPDV-LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 492 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
+|+...| -.++..|-+.|+++.|...++.. +-.|+. ..|..-.+.+...|+.+.|-..++++.+++-.|..+-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4444444 45778889999999999999988 666763 3455556778888999999999999999998886666678
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 568 ANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 568 ~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
+.-..++++.++|.++..+.-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 8888899999999999999988775
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=2.3e-09 Score=97.26 Aligned_cols=233 Identities=11% Similarity=0.049 Sum_probs=194.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406 (648)
Q Consensus 327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (648)
+.+..+|.+.|.+.+|.+.|+.-... .|-+.||..+-..|.+..++..|..++.+-.+. +|-++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999888775 577788999999999999999999998887764 355555555677788888
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 037816 407 GDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK 483 (648)
Q Consensus 407 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 483 (648)
++.++|.++|+...+ .++....++...|.-.++++-|+.+++++.+.|+ -++..|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998764 3666777777888899999999999999999994 577788888889999999999999999
Q ss_pred HhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 484 SMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 484 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
+.... .-.| -..+|-.+....+..|++.-|.+.|+-. ...| ....++.|.-.-.+.|+++.|..+++.+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99875 4445 4567888999999999999999999987 3333 4778999988889999999999999999999887
Q ss_pred CCccH
Q 037816 560 SPAPY 564 (648)
Q Consensus 560 ~~~~~ 564 (648)
-....
T Consensus 462 m~E~~ 466 (478)
T KOG1129|consen 462 MAEVT 466 (478)
T ss_pred ccccc
Confidence 54433
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.5e-06 Score=85.79 Aligned_cols=442 Identities=11% Similarity=0.062 Sum_probs=261.4
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHH-
Q 037816 47 ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT- 125 (648)
Q Consensus 47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~- 125 (648)
+.+=++-....|++++|......++.. + |.+...+.+=+-++.+.+++++|+.+.+.-.... +++.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~ 81 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSI--V---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF 81 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhc--C---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh
Confidence 334455566677888888888888877 2 6677888888889999999999997776654221 2222
Q ss_pred -HHHHH--HhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHH
Q 037816 126 -MVSGF--LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT--VGNALITS 200 (648)
Q Consensus 126 -li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~ 200 (648)
+=.+| .+.++.++|+..++ |..+++..+...-...|.+.++++++..+|+.+.+++. ++.. .-..++.+
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAV 155 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 23444 46899999999988 44444443666667779999999999999999988763 3322 22222221
Q ss_pred hHhcCChhHHHHHhcccCCCCcccHHHHH---HHHHHCCCchHHHHHHHHHHhCC--------C-----CCChh-hHHHH
Q 037816 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVI---SGLVQNQLYEEGLKLFVKMHLGL--------I-----NPNSL-TYLSS 263 (648)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~--------~-----~p~~~-t~~~l 263 (648)
- -...+. +.+..+.....+|..+. ..+...|++.+|+++++.....+ . .-+.. .-..+
T Consensus 156 ~----a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 156 A----AALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred H----HhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 1 111121 34444433344555444 45567899999999998883211 1 11111 12234
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhcCCHH-HHHHHHHhccCC---------------Cc
Q 037816 264 VMACSGLQALCEGRQIHGILWKLALQSDL----CIESALMDMYSKCGSVE-DAWQIFEFAEEL---------------DG 323 (648)
Q Consensus 264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~---------------~~ 323 (648)
.-++-..|+-++|..++...++... +|. ..-|.|+.+-....-++ .++..++..... .+
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i 309 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI 309 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455678999999999999888763 332 22233333222221111 122222222211 11
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG--VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401 (648)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 401 (648)
..-+.++..|. +..+.+.++..... +..|. ..+.+++..+. +......+.+++....+..-.-...+.-.++.
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 11122232222 22233333322211 11222 33444444433 22246667777766665543334556667777
Q ss_pred HHHhCCCHHHHHHHHh--------hcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHH---
Q 037816 402 MYSKCGDLEDSIKVFS--------RMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTDVTFLSLL--- 466 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll--- 466 (648)
.....|+++.|.+++. .+.+ ..+.+..+++..+.+.++.+.|..++++.... .-.+.......++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8888899999988888 3332 24556666777777777777777777766531 1123323333333
Q ss_pred -HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 467 -HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 467 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
.--.+.|+-++|..+++++.+ -.+++..+...++.+|++. +.+.|..+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 333567899999999999987 3567888888999888876 578888887777
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.7e-08 Score=87.77 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=112.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHh
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMV 505 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 505 (648)
...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+ +.| +..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence 3445566777777777777777777754 22445666677777777777777777777765 234 666677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHH
Q 037816 506 GRAGLLIEARSFIERMPVKP----DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 581 (648)
|..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777762222 25567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 037816 582 KAIKRMKEMGV 592 (648)
Q Consensus 582 ~~~~~m~~~~~ 592 (648)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777766554
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=1e-06 Score=88.72 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=33.3
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 037816 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447 (648)
Q Consensus 368 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 447 (648)
......+.+|..+++.++.... ...-|..+.+.|...|+++.|+++|.+.. .++-.|..|.+.|+|+.|.++-
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 3344445555555544443321 11233444445555555555555554332 2333444455555555554443
Q ss_pred H
Q 037816 448 E 448 (648)
Q Consensus 448 ~ 448 (648)
.
T Consensus 815 ~ 815 (1636)
T KOG3616|consen 815 E 815 (1636)
T ss_pred H
Confidence 3
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.8e-07 Score=83.21 Aligned_cols=387 Identities=10% Similarity=0.044 Sum_probs=245.8
Q ss_pred ChhHHHHHHHHhHhcCChhHHHHHhcccCCC-CcccHHHHHHHHHHCCC-chHHHHHHHHH-HhCCCCCChhhHHHHHHH
Q 037816 190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQL-YEEGLKLFVKM-HLGLINPNSLTYLSSVMA 266 (648)
Q Consensus 190 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m-~~~~~~p~~~t~~~ll~~ 266 (648)
+...-...+.+|...++.+.|...+.+.+.. .....|.|+.-+.+.|- ..++.--+.+. ++. |= -...|.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p~---aL~~i~~ 169 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---PM---ALQVIEA 169 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---ch---HHHHHHH
Confidence 4455566788888889999999888888754 33444545444444432 22222222222 221 00 0001111
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--cCCHHHHHHHHHhccC-----CCcccHHHHHHHHHHcCCH
Q 037816 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK--CGSVEDAWQIFEFAEE-----LDGVSMTVILVGFAQNGFE 339 (648)
Q Consensus 267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~ 339 (648)
..+.+ +..++..-..|-...++|.......-+.+++. .++...|...+-.+.. .|+.....+..++...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 11100 11111111122222334444433333444333 3343344433332222 3666677888999999999
Q ss_pred HHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 037816 340 EEAMQLFVKMVKAGIEIDPNM-VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418 (648)
Q Consensus 340 ~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (648)
++|...|++.... .|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.-.......++++.|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999998764 343321 1112223456778888777777666433 11222222223344567789999988887
Q ss_pred cCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 037816 419 MAPRN---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494 (648)
Q Consensus 419 ~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 494 (648)
..+.+ +..|-.-...+...|+.++|.-.|+.... +.| +...|..|+.+|...|++.+|.-.-....+ -++.+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcc
Confidence 76544 44444344577889999999999999887 455 778999999999999999999988888776 34556
Q ss_pred hhHHHHHH-HHhh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 495 AEHYACVV-DMVG-RAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 495 ~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
..+...+. ..+. .-.--++|.+++++. .+.|+ ....+.+...|...|..+.++.++++.+...|++ .....+++.
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~ 480 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDI 480 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHH
Confidence 66666553 3333 223458899999887 88888 4456677777899999999999999999999886 799999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037816 571 YSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 571 ~~~~g~~~~A~~~~~~m~~~~ 591 (648)
+...+.+++|.+.|....+.+
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcC
Confidence 999999999999999987643
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=2.6e-08 Score=96.36 Aligned_cols=150 Identities=11% Similarity=-0.014 Sum_probs=75.3
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCcC--HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816 334 AQNGFEEEAMQLFVKMVKAG-IEID--PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410 (648)
Q Consensus 334 ~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (648)
...+..+.++..+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.++..|+.+...+...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 34455566666666666432 1111 2334444455555666666666666555543 334555555555666666666
Q ss_pred HHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 411 DSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 411 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
+|...|+...+ | +..+|..+..++...|++++|++.+++..+.. |+..........+...++.++|...+.+..
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66665555432 2 33455555555555566666666665555532 332211111112233445555555554443
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-05 Score=84.58 Aligned_cols=217 Identities=9% Similarity=0.009 Sum_probs=125.3
Q ss_pred HHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHH
Q 037816 95 LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174 (648)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~ 174 (648)
.+.+|+..|+++++.-...+.. -+.-|-.+++.+.+ -+++.+.++...|.+.. |... .+..+...+...+....
T Consensus 487 Vi~cfAE~Gqf~KiilY~kKvG--yTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~-die~I~DlFme~N~iQq 560 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYAKKVG--YTPDYMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLA-DIEQIVDLFMELNLIQQ 560 (1666)
T ss_pred HHHHHHHhcchhHHHHHHHHcC--CCccHHHHHHHHHc-cChhHHHHHHHHhhccC--CCcc-cHHHHHHHHHHHHhhhh
Confidence 3444555555555544444433 11225556666666 56777777777776643 2222 34444444444333333
Q ss_pred HHHHHHHHHHhC-------------------C----------CCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCcc
Q 037816 175 SKMIHCLVYLCG-------------------Y----------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVI 223 (648)
Q Consensus 175 a~~~~~~~~~~~-------------------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 223 (648)
+..++-..++.. . .-+..-+..+.+.|.+.|-...|++.+..+.. +.++
T Consensus 561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV 640 (1666)
T KOG0985|consen 561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV 640 (1666)
T ss_pred hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH
Confidence 333322222211 0 01112255667777888888888887777652 2221
Q ss_pred cHH----HHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh-----------cC
Q 037816 224 TWT----AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-----------AL 288 (648)
Q Consensus 224 ~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~ 288 (648)
.-+ ..+-.|.-.-.++.+.+.++.|...+++.|..+...+..-|...=-.+...++|+..... ++
T Consensus 641 hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~ 720 (1666)
T KOG0985|consen 641 HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNF 720 (1666)
T ss_pred HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcc
Confidence 111 112334445577888888888888888888877777777776665666677777765431 24
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816 289 QSDLCIESALMDMYSKCGSVEDAWQIFEF 317 (648)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 317 (648)
..|..+.-..|.+.++.|++.+.+++.++
T Consensus 721 seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 721 SEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred ccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 55666667788888999999988887654
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.5e-07 Score=91.05 Aligned_cols=92 Identities=8% Similarity=-0.078 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405 (648)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (648)
|..+...+...|++++|...|++..+.. +.+...|..+...+...|+++.|...++...+.. +.+..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344444444555555555555444432 2234444444444555555555555555444432 2233344444444444
Q ss_pred CCCHHHHHHHHhhc
Q 037816 406 CGDLEDSIKVFSRM 419 (648)
Q Consensus 406 ~g~~~~A~~~~~~~ 419 (648)
.|++++|.+.|+..
T Consensus 145 ~g~~~eA~~~~~~a 158 (296)
T PRK11189 145 GGRYELAQDDLLAF 158 (296)
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555554443
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.9e-05 Score=81.00 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=146.5
Q ss_pred HhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC-----------CCc-c
Q 037816 54 SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM-----------RDT-V 121 (648)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~ 121 (648)
|...|+++.|..-.+.+ .+..+|..+.++|.+..+.+-|.-.+..|.. .|. .
T Consensus 738 yvtiG~MD~AfksI~~I----------------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e 801 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI----------------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE 801 (1416)
T ss_pred EEEeccHHHHHHHHHHH----------------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence 55567777776655444 3456899999999999999999999988862 122 2
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY 201 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 201 (648)
+-.-+.-.-...|..++|..+|.+.++. ..|=+.|-..|.+++|.++-+.--+-.+. .||.....-+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~L 868 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYL 868 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHH
Confidence 2222223336678999999999988754 33445566678888888776554332222 3444455555
Q ss_pred HhcCChhHHHHHhcccCC-----------------------CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh
Q 037816 202 FKCGSSSSGRKVFGEMRV-----------------------RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258 (648)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 258 (648)
...++.+.|++.|+.... +|...|.-....+-..|+.+.|+.+|...++
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------- 940 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-------- 940 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence 667888888888876642 2334444455555567888888888877654
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037816 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE 319 (648)
Q Consensus 259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 319 (648)
|-++++..+-.|+.++|.++-++- -|....-.|.+.|-..|++.+|..+|.+..
T Consensus 941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555666666677777777766542 233344557777778888888888776654
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.97 E-value=1.3e-06 Score=89.40 Aligned_cols=285 Identities=10% Similarity=0.026 Sum_probs=139.6
Q ss_pred HHHhHhcCChhHHHHHhcccCC--CCc-ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh------
Q 037816 198 ITSYFKCGSSSSGRKVFGEMRV--RNV-ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS------ 268 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~------ 268 (648)
...+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+.+.+ |+...|-..+..+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445667777777777765542 232 334455666777777777777777776643 56655544444332
Q ss_pred ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 037816 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348 (648)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 348 (648)
...+.+...++++++...- |.......+.-.+.....+ -..+..++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~ 136 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRP 136 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence 1112344444444443322 1111111110001110011 1233344445
Q ss_pred HHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh----C----------CCCch--hHHHHHHHHHHhCCCHHHH
Q 037816 349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D----------FTSNP--FVNNGLINMYSKCGDLEDS 412 (648)
Q Consensus 349 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A 412 (648)
+...|+++ +|+.+-..|...........++...... + -+|+. .++..+...|-..|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 55555432 3333333333333333333333333211 0 12333 2334445556666666666
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816 413 IKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH 489 (648)
Q Consensus 413 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 489 (648)
++++++... | .+..|..-...|-+.|++.+|.+.++.....+ .-|...-+-....+.+.|++++|.+++....+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~- 291 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE- 291 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-
Confidence 666665543 2 23455555666666677777766666666643 234445555556666667777776666666553
Q ss_pred CCCCChhHH--------HHHHHHhhhcCCHHHHHHHHHhC
Q 037816 490 RISPRAEHY--------ACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 490 ~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
+..|....+ .....+|.+.|++..|++-|..+
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333321111 23345666666666666555443
No 86
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.6e-06 Score=86.93 Aligned_cols=431 Identities=13% Similarity=0.060 Sum_probs=248.2
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
..|..+|..|.-++.+.|+++.+.+.|+.... .....|+.+-..|...|....|..+++.-....-.|++...+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 45555666555556666666666666655442 123345555555555565555665555544333224333233333
Q ss_pred HHHhh-ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC-CCCcccHHHHHHHHHHC-----
Q 037816 163 LSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQN----- 235 (648)
Q Consensus 163 l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~----- 235 (648)
-+.|. +.+..+++..+-..++... .... ......|..+.-+|...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~----------------------------~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLL----------------------------GGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHh----------------------------hhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 33333 2233333333333333210 0000 01112232222222211
Q ss_pred ------CCchHHHHHHHHHHhCC-CCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH
Q 037816 236 ------QLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV 308 (648)
Q Consensus 236 ------g~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 308 (648)
....++++.+++..+.+ -.|+...|.++ -++..++++.|.+..++..+.+-..+...|..|.-.+.-.+++
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence 12356777777776543 33444444333 4566788999999999998887788888888888888888999
Q ss_pred HHHHHHHHhccCCCcccHHH---HHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHHHHH
Q 037816 309 EDAWQIFEFAEELDGVSMTV---ILVGFAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQIHSL 383 (648)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 383 (648)
.+|+++.+...+.-...|+. -+..-..-++.++++.....+...- ..+-..+. +-.........
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-----------~~g~~~~lk~~ 598 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-----------DEGKLLRLKAG 598 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-----------hhhhhhhhhcc
Confidence 99999888766532222221 2233334678888887777665420 00100000 00011111111
Q ss_pred HH--HhCCCCchhHHHHHHHHHH---hCCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816 384 II--KSDFTSNPFVNNGLINMYS---KCGDLEDSIKVFSRMAPRN------SVSWNSMIAAFARHGNGFKALELYEEMKL 452 (648)
Q Consensus 384 ~~--~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 452 (648)
+. .......+.++..+..... +.-..+..+..+.....++ ...|......+.+.+..++|...+.+...
T Consensus 599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 10 0011112223332222221 1111111111122222222 23455667778888999999988888876
Q ss_pred cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHH--HHHhC-CCCC-CH
Q 037816 453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARS--FIERM-PVKP-DV 527 (648)
Q Consensus 453 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~ 527 (648)
.. +-....|......+...|..++|.+.|..... +.| ++....++..++.+.|+..-|.. ++..+ .+.| +.
T Consensus 679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 42 33666777777888899999999999999864 566 77889999999999998777776 88887 6666 47
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
..|-.+...+.+.|+.+.|.+.|..+.++.+.+|
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8899999999999999999999999999887765
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.97 E-value=1.6e-07 Score=81.71 Aligned_cols=192 Identities=12% Similarity=0.054 Sum_probs=131.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816 397 NGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473 (648)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 473 (648)
.-|.-.|...|++..|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34555677777777777777776532 34566777777777777777777777777643 224456666666677777
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (648)
.+++|.+.|++........--..+|..+.-+..+.|+++.|...|++. ...|+ +.+...+.....+.|++-.|..+++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777777765444445667777777777777777777777776 33343 5556667777777777777777777
Q ss_pred HHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 552 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
......+......-..+.+-.+.|+-+.+-++=..+.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77766666666777777777777777777666555544
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.1e-05 Score=79.19 Aligned_cols=220 Identities=14% Similarity=0.014 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037816 323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402 (648)
Q Consensus 323 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 402 (648)
+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++....+..-.|... +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345666666666666666666655332 355566677777777777777766666666555444433 456666
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 482 (648)
|++.+++.+.++++. .||..-...+..-|...|.++.|.-+|.. ...|..|...+...|+++.|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 777766666555442 23333333333333334444433333221 112333333333333333333322
Q ss_pred HHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
+++ .+..+|..+..+|...+.+.-|. -.| +-....-..-++..|...|-+++-+.+++..+.+....
T Consensus 1244 RKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred hhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 222 12333433333333333222111 001 11123334445555555566666666655555555555
Q ss_pred CccHHHHHHHHHh
Q 037816 561 PAPYILMANIYSC 573 (648)
Q Consensus 561 ~~~~~~l~~~~~~ 573 (648)
...|..++-.|++
T Consensus 1313 MgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1313 MGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.2e-06 Score=84.01 Aligned_cols=436 Identities=12% Similarity=0.066 Sum_probs=210.6
Q ss_pred HHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChH
Q 037816 97 SFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL 173 (648)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~ 173 (648)
.+....|+++.|+..|.+.. .+|-..|..=..+|+..|++++|++=-.+-++.. |+=...|...-.++...|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence 45667899999999998765 4477778888889999999999888777766654 776668888888888889999
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHH-HHHhcccCCCCcccHHHH-----HHHHHHCCCchHHHHHHHH
Q 037816 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG-RKVFGEMRVRNVITWTAV-----ISGLVQNQLYEEGLKLFVK 247 (648)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~ 247 (648)
+|...|..-++.. +.+...++.+..++ ..+.+ .+.|. .| ..|..+ .+.+...-.+..-++.++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~---~p--~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT---KP--YFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc---Cc--HHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999888877755 55566777777776 11111 11111 11 111111 1111111111111111111
Q ss_pred HHhCCCCCChh-hH---HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHH---HHHHHHHhcCC-HHHHHHHHHhcc
Q 037816 248 MHLGLINPNSL-TY---LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES---ALMDMYSKCGS-VEDAWQIFEFAE 319 (648)
Q Consensus 248 m~~~~~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~-~~~A~~~~~~~~ 319 (648)
.|+.. .| ..++.+.......+.- .....|..+....-+ --....-..++ .++.. .
T Consensus 158 ------~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~------~ 220 (539)
T KOG0548|consen 158 ------NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR------V 220 (539)
T ss_pred ------CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHH------H
Confidence 01100 00 0000000000000000 000000000000000 00000000000 00000 0
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH--
Q 037816 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-- 397 (648)
Q Consensus 320 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-- 397 (648)
..-......+.++..+..++..|++.+....+.. .+..-++..-.++...|.+..+...-....+.|.. ...-|+
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klI 297 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLI 297 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHH
Confidence 0001112334555555666666666666665543 33333344444555555555555554444443311 111111
Q ss_pred -----HHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhc
Q 037816 398 -----GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSH 471 (648)
Q Consensus 398 -----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~ 471 (648)
.+..+|.+.++++.|...|.+...+-.. -....+....++++.......- +.|... -...-...+.+
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh
Confidence 1333555556666676666654321000 1111223334444444444333 223321 12222445666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYA 549 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 549 (648)
.|++..|+..|.++++. .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..=..++.-..+++.|.+.
T Consensus 371 ~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred ccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777663 2446667777777777777777777665555 33343 22233333444445567777777
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHh
Q 037816 550 AEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 550 ~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
|++.++.+|.+..+...+.++...
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHH
Confidence 777777777766555555555443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=3.7e-06 Score=77.51 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=98.5
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHH
Q 037816 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKA 443 (648)
Q Consensus 367 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 443 (648)
.+...|+...|+.....+.+.. +-+...+..-..+|...|++..|+.=+.... ..+..++--+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445566666666666655543 4555666666667777777777665554433 34555555555666666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH-------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHh
Q 037816 444 LELYEEMKLEGVEPTDVTFLSL-------------LHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMV 505 (648)
Q Consensus 444 ~~~~~~m~~~~~~p~~~~~~~l-------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~ 505 (648)
+...++.++ +.||....... +......+++.++++..+...+. .|. ...+..+..++
T Consensus 243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence 766666666 33654322111 01122334444455544444432 221 22233344444
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 506 GRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
...|++.+|++...+. .+.|| ..++.--..+|.-...++.|++-|+++.+.++++.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 5555555555555554 44443 44444444555555555555555555555555553
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.1e-07 Score=93.54 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=166.2
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037816 369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALE 445 (648)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 445 (648)
.+.|++..|.-.|+..++.. |-+...|..|.......++-..|+..+.+.. +.|....-.|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 35566666666666666654 5566777777777777777777777776654 3356677777778888888888888
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816 446 LYEEMKLEGVE--------PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517 (648)
Q Consensus 446 ~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (648)
.+++-+....+ ++...-.. ..+.....+....++|-++....+..+|+.+...|.-.|--.|.+++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88887653310 00000000 122333345566666666665446668999999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 518 IERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 518 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|+.+ .++|+ ...||-|..+++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|=..+...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9998 77775 67799999999999999999999999999999999999999999999999999999988876653
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=3.7e-08 Score=93.77 Aligned_cols=249 Identities=10% Similarity=0.059 Sum_probs=120.2
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816 300 DMYSKCGSVEDAWQIFEFAEELD----GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 375 (648)
+-+.-.|++..++.-.+ ....+ ......+.+++...|+++.++. ++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34555677777775554 22211 2233445667777777665443 222222 555555554444444333333
Q ss_pred HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816 376 LGKQIHSLIIKSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454 (648)
Q Consensus 376 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 454 (648)
.+..-++.....+.. .++.+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 333333332222222 22233333334455567777777666654 34555555666666777777777777766653
Q ss_pred CCCCHHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHH
Q 037816 455 VEPTDVTFLSLLHACS----HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVL 528 (648)
Q Consensus 455 ~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 528 (648)
..|. +...+..++. ..+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+. ...| ++.
T Consensus 161 -~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 161 -DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp -SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred -CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 2332 2333333321 22346666666666654 34455555566666666666666666655554 2222 344
Q ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCC
Q 037816 529 VWQALLGACSIHGDS-EMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~ 560 (648)
++..++.+....|+. +.+.+++.++....|..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 444444444455544 44555555555555554
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.87 E-value=8.3e-06 Score=82.45 Aligned_cols=429 Identities=13% Similarity=0.120 Sum_probs=236.9
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHH
Q 037816 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV 182 (648)
Q Consensus 103 g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 182 (648)
.++.+|..+|-+-.. -..-|..|....++++|+.+-+- .|. |.-...-.+-++++...|+-+.|-.+-
T Consensus 545 kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~-p~~eklk~sy~q~l~dt~qd~ka~elk--- 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGH-PALEKLKRSYLQALMDTGQDEKAAELK--- 612 (1636)
T ss_pred hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCC-hHHHHHHHHHHHHHHhcCchhhhhhhc---
Confidence 456777777644321 23445666666778887776543 121 221112333344455555555544432
Q ss_pred HHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh--
Q 037816 183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL-- 258 (648)
Q Consensus 183 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-- 258 (648)
..+-.. -+-|..|.+.|.+.+|.+....-. ..|......+..++.+..-+++|-++|+++.. |+..
T Consensus 613 -----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dkale 682 (1636)
T KOG3616|consen 613 -----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDKALE 682 (1636)
T ss_pred -----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHHHHH
Confidence 111122 234677777877777766543221 23333344444444444444444444444432 1100
Q ss_pred ------hHHHH-------------------HHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 037816 259 ------TYLSS-------------------VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ 313 (648)
Q Consensus 259 ------t~~~l-------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 313 (648)
.|... -..+...|+++.|..-|-+.. ....-+.+......+.+|+.
T Consensus 683 ~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ 753 (1636)
T KOG3616|consen 683 CFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAIS 753 (1636)
T ss_pred HHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHh
Confidence 00000 001111122222221111110 11223445556677888888
Q ss_pred HHHhccCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 037816 314 IFEFAEELDGV--SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391 (648)
Q Consensus 314 ~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 391 (648)
+++.+.+.++. -|..+...|...|+++.|.++|.+. ..+.-.|..|.+.|++..|.++-.+. .|...
T Consensus 754 ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~ 822 (1636)
T KOG3616|consen 754 ILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEA 822 (1636)
T ss_pred HHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchh
Confidence 88877775443 3666777888888888888887553 23445577788888888887765443 34345
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
....|-+-..-+-..|++.+|+++|-.+..|+. .|..|-+.|..+..+++..+-.- ..-..|...+..-+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEA 894 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHh
Confidence 556666666667778888888888888777764 35667788888888777665331 1123456667777888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-C---HHHH------HHHHHHHHHcC
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-D---VLVW------QALLGACSIHG 541 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---~~~~------~~l~~~~~~~g 541 (648)
.|++..|..-|-+... |.+-+++|-..+.|++|.++-+.-+-.. . ...| .+.++.+-++|
T Consensus 895 ~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g 964 (1636)
T KOG3616|consen 895 EGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG 964 (1636)
T ss_pred ccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh
Confidence 8888888887766643 5566777878888888877766542110 0 1111 11122233444
Q ss_pred ChHHHHHHH------HHHH-----hcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 542 DSEMGKYAA------EKLF-----LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 542 ~~~~A~~~~------~~~~-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
-.+.|+.+. +-+. .....-+.+...++..+...|++++|-+.|-+..+.+
T Consensus 965 ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 965 LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 444444321 1111 1122334667777788888899999977776665543
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.86 E-value=7.7e-06 Score=82.37 Aligned_cols=259 Identities=10% Similarity=-0.012 Sum_probs=157.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHH---HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA---VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (648)
..+...|++++|.+.+++..+.. +.+...+.. ........+....+.+.+.. .....+........+...+...|
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence 34567788888888888887753 333333332 11111223445555554443 11122233344456667788899
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHHH
Q 037816 408 DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTD--VTFLSLLHACSHVGLVNKGMEF 481 (648)
Q Consensus 408 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~ 481 (648)
++++|...+++.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998875 33566778888889999999999999998876431 1232 2455677788899999999999
Q ss_pred HHHhHHhcCCCCChhHH-H--HHHHHhhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816 482 LKSMTEVHRISPRAEHY-A--CVVDMVGRAGLLIEARSF---IER---M-PVKPDVLVWQALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 482 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (648)
+++........+..... + .++..+...|....+.+. ... . ..............++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99985421111222111 1 223333344432222222 111 1 111112222345666788899999999998
Q ss_pred HHHhcCC---------CCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 552 KLFLAQP---------DSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 552 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
.+....- .........+.++...|++++|.+.+......+
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8864221 123455666777889999999999999887654
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.2e-06 Score=82.04 Aligned_cols=436 Identities=13% Similarity=0.040 Sum_probs=246.8
Q ss_pred HHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--CCC-cccHHHHHH
Q 037816 52 SISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRD-TVSWNTMVS 128 (648)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~y~~li~ 128 (648)
.+....|+++.|...|...+.. . |+|.+.|+.-..+|++.|++++|++--.+-. .|+ ...|+....
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l--~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML--S---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc--C---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence 4567789999999999999877 2 6788899999999999999999987766655 344 346999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH-----HHhHh
Q 037816 129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI-----TSYFK 203 (648)
Q Consensus 129 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~ 203 (648)
++.-.|++++|+.-|.+=++.. |+....+..+..+.. .+.+. +. .--++..|..+. +.+..
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~ 144 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLS 144 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhc
Confidence 9999999999999999977764 777656666666651 11111 10 011222222211 11111
Q ss_pred cCChhHHHHHhcccCCCCccc---HHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH---HHHHHHhhccCChHHHH
Q 037816 204 CGSSSSGRKVFGEMRVRNVIT---WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY---LSSVMACSGLQALCEGR 277 (648)
Q Consensus 204 ~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~~~~~~a~ 277 (648)
.-.+-.-++.+..-+. ++-. ...++.+.......+.- .+...|+.+....- ..........++..+-.
T Consensus 145 ~~~~~~~l~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 145 DPAYVKILEIIQKNPT-SLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred cHHHHHHHHHhhcCcH-hhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 1122222222221110 0000 11111111111000000 11111111000000 00000000000000000
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355 (648)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 355 (648)
+ ...-..-...+.++..+..+++.|.+.+....+. ++.-++....+|...|.+...........+.|..
T Consensus 219 ~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre 289 (539)
T KOG0548|consen 219 R---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE 289 (539)
T ss_pred H---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence 0 0001112244666666777777777777666543 3333555666777777777777766666555522
Q ss_pred cC------HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCCh-hH
Q 037816 356 ID------PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNS-VS 426 (648)
Q Consensus 356 p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~ 426 (648)
.- ...+..+-.++.+.++++.+...|.+.......|+. ..+....+++........ .|.. .-
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e 360 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEE 360 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHH
Confidence 11 112222334566678888999998887655444432 223344555555544332 2222 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (648)
...-...+.+.|++..|+..|.+++++. +-|...|....-+|.+.|.+..|+.-.+...+. -++....|..=..++.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 2222567888999999999999999976 447888999999999999999999988888763 2334555555566666
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 037816 507 RAGLLIEARSFIERM-PVKPDVLVWQALLGACSI 539 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 539 (648)
-..++++|++.|.+. ...|+..-+.--+.-|..
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 777899999999888 556665544444444443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=2.7e-07 Score=87.94 Aligned_cols=245 Identities=12% Similarity=0.010 Sum_probs=155.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816 331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410 (648)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (648)
+.+.-.|++..++.-.+ ........+......+.+++...|+.+.+ ..++.... +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888876555 22222222344555666777777776643 33333333 566666655555444435566
Q ss_pred HHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816 411 DSIKVFSRMA-PR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 411 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
.+..-+++.. .+ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665443 22 2222222234456678888888887642 45566677788888899999999999888
Q ss_pred HHhcCCCCChhHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 486 TEVHRISPRAEHYACVVDMVG----RAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
.+ +..| .+...+..++. -.+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++++++.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 65 2333 33334444433 234688899999988 45577888888888888999999999999998888898
Q ss_pred CCccHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 037816 560 SPAPYILMANIYSCSGRW-KERAKAIKRMKEM 590 (648)
Q Consensus 560 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 590 (648)
++.+...++.+....|+. +.+.+++.++.+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 888888888888888888 6677788887664
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=4.3e-06 Score=75.55 Aligned_cols=388 Identities=11% Similarity=0.035 Sum_probs=189.8
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCcccHHH-HHHHHHH
Q 037816 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITWTA-VISGLVQ 234 (648)
Q Consensus 158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~ 234 (648)
-|..++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|...++.+.. |...-|.. -...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34555555555555555555554444332 22444455555555555566666555555542 22222221 1344455
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 314 (648)
++.+..|+.+...|.+. |+...-..-+.+.. .-..+++..+..+
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rsL 134 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRSL 134 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHHH
Confidence 55555565555555331 22111111111111 1123444444444
Q ss_pred HHhccC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc-
Q 037816 315 FEFAEE-LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN- 392 (648)
Q Consensus 315 ~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 392 (648)
.++... .+..+.+.......+.|+++.|++-|+...+-+--.....|+..+ ++.+.++.+.|.++..++++.|++..
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 444442 233333333333444555555555555544422111223333332 22334455555555555554443211
Q ss_pred ---------------------------hhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCCh
Q 037816 393 ---------------------------PFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----NSVSWNSMIAAFARHGNG 440 (648)
Q Consensus 393 ---------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 440 (648)
+..+|.-...+.+.|+++.|.+.+..|+++ |++|...+.-.- ..+++
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 112232333456789999999999999854 566655443221 23455
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHhh-hcCCHHHHHHHH
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYACVVDMVG-RAGLLIEARSFI 518 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~ 518 (648)
.+..+-++-+...+ +--..||..++-.||+..-++.|-.++.+-... -.. .+...|+. ++++. -.-..++|.+-+
T Consensus 293 ~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKKL 369 (459)
T ss_pred cccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHHH
Confidence 55555566666543 235678999999999999999888887654321 111 14444443 33333 334566666655
Q ss_pred HhCCCCCCHHHHHHHHHH-HHHcCC----hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 519 ERMPVKPDVLVWQALLGA-CSIHGD----SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 519 ~~~~~~p~~~~~~~l~~~-~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+.+........-...+.. -.+..+ ...|++-+++.+++-- .+....++.|.+..++..+.++|..-.+-
T Consensus 370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 544100000001111111 111222 2223334444444332 24556677888999999999999887664
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.81 E-value=2.9e-05 Score=81.60 Aligned_cols=126 Identities=10% Similarity=-0.019 Sum_probs=67.6
Q ss_pred hHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC---ccc
Q 037816 46 DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD---TVS 122 (648)
Q Consensus 46 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~ 122 (648)
.|..+-.-|....|...|...|....+. . +.+...+..+...|++..+++.|..+.-...+.+ ...
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL--D---------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL--D---------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 5666666666666666666666666554 1 3345566666677777777777766632222111 111
Q ss_pred HH--HHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHH
Q 037816 123 WN--TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL 184 (648)
Q Consensus 123 y~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 184 (648)
+| ...-.|.+.+++.+|+.-|+...+.. |.+...+..+..+|.+.|....|..++.....
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 11 12223444555555555555554433 55544555555555555555555555554443
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=5.7e-05 Score=77.69 Aligned_cols=347 Identities=12% Similarity=0.053 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHH--HhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC--------C-CCCc
Q 037816 87 NATVIWNSLLSF--YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG--------F-YQLD 155 (648)
Q Consensus 87 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--------~-~p~~ 155 (648)
-|..|-.++++. |.--|+.+.|.+-.+.++ +-..|..+.+.+.+.++.+-|.-.+-.|.... . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 456677777764 777799999988887776 44668889999998888888777766664321 1 122
Q ss_pred HhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC-CcccHHHHHHHHHH
Q 037816 156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQ 234 (648)
Q Consensus 156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 234 (648)
. +-..+.-.....|.+++|..+++.-.+.+ .|=..|...|.+++|.++-+.-..- =..||......+-.
T Consensus 801 e-~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 E-DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred c-hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 2 33344444567788888888888777643 3445677788888888876543321 12356666666677
Q ss_pred CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 314 (648)
.++.+.|++.|++... |--..+..| ..++...+...+. ..|...|.--....-..|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~~----hafev~rmL------~e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HAFEVFRML------KEYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC----hHHHHHHHH------HhChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence 7888888888876421 111111000 0111111111111 22334444444455566777777777
Q ss_pred HHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchh
Q 037816 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF 394 (648)
Q Consensus 315 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 394 (648)
|....+ |-.+++..|-.|+.++|.++-++ .-|......+.+.|-..|++.+|..+|.++...
T Consensus 935 Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf------- 996 (1416)
T KOG3617|consen 935 YSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF------- 996 (1416)
T ss_pred HHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------
Confidence 766544 55566666677777777766544 235555666677777777777777777655421
Q ss_pred HHHHHHHHHHhCCCHH----------------HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH--------H
Q 037816 395 VNNGLINMYSKCGDLE----------------DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE--------M 450 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~----------------~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------m 450 (648)
..-|+. |+.++++ .|-++|++.. .-....+..|-+.|.+.+|+++--+ +
T Consensus 997 --snAIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 997 --SNAIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred --HHHHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 122221 2222222 3333333322 0112234455666666666654322 2
Q ss_pred HHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 451 KLEGVE--PTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 451 ~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
+..++. .|+...+...+-++...++++|..++-..++
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 222222 3455555555556666667777666655543
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=2.1e-05 Score=89.90 Aligned_cols=324 Identities=11% Similarity=-0.017 Sum_probs=201.4
Q ss_pred hccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CC---c-c----cHHHHHHHHHH
Q 037816 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LD---G-V----SMTVILVGFAQ 335 (648)
Q Consensus 268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~---~-~----~~~~li~~~~~ 335 (648)
...|+++.+...+..+.......+..........+...|++++|..++..... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666655555442111112222334445556678899998888876532 11 1 0 11122344667
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhC
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF---TS--NPFVNNGLINMYSKC 406 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~ 406 (648)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ ....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887763212221 2334455566788999999998887764211 11 123455667778889
Q ss_pred CCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhc
Q 037816 407 GDLEDSIKVFSRMAP-------R----NSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPT--DVTFLSLLHACSH 471 (648)
Q Consensus 407 g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~ 471 (648)
|++++|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988776531 1 12234445566777899999999998876531 1122 2334445566788
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHhhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHc
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMPV-K-PDV----LVWQALLGACSIH 540 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~ 540 (648)
.|+++.|.+.++..............+ ...+..+...|+.+.|.+.+..... . ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988885521111111111 1122445568899999999877611 1 111 1134566778889
Q ss_pred CChHHHHHHHHHHHhcCC------CCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 541 GDSEMGKYAAEKLFLAQP------DSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|+.++|...++++..... ....++..++.++.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999876421 123467778889999999999999999988754
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=6.9e-05 Score=85.76 Aligned_cols=330 Identities=8% Similarity=-0.033 Sum_probs=209.4
Q ss_pred HHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcC------CCc--hhHHHHHHHH
Q 037816 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL------QSD--LCIESALMDM 301 (648)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 301 (648)
..+...|+++.+..+++.+.......+..........+...|+++++...+......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776652211112222233344455677899999998887755311 111 1222334455
Q ss_pred HHhcCCHHHHHHHHHhccC--C--Cc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcC--HHHHHHHHHHH
Q 037816 302 YSKCGSVEDAWQIFEFAEE--L--DG----VSMTVILVGFAQNGFEEEAMQLFVKMVKAGI---EID--PNMVSAVLGVF 368 (648)
Q Consensus 302 ~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~ 368 (648)
+...|++++|...++.... + +. ...+.+...+...|++++|...+++.....- .+. ..++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6788999999999887643 1 11 2334556677889999999999988865311 111 23445556677
Q ss_pred hccCChhHHHHHHHHHHH----hCCCC---chhHHHHHHHHHHhCCCHHHHHHHHhhcCC------C--ChhHHHHHHHH
Q 037816 369 GVDTSLGLGKQIHSLIIK----SDFTS---NPFVNNGLINMYSKCGDLEDSIKVFSRMAP------R--NSVSWNSMIAA 433 (648)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~ 433 (648)
...|+++.|...+++... .+... ....+..+...+...|++++|...+.+... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999999877654 23211 223445566677788999999988877632 1 12344456667
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEP-TDVTF-----LSLLHACSHVGLVNKGMEFLKSMTEVHRISPR---AEHYACVVDM 504 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~ 504 (648)
+...|++++|...+.+........ ....+ ...+..+...|+.+.|..++...... ..... ...+..+..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHH
Confidence 788999999999998886421111 11111 11223445588999999998776541 11111 1113567778
Q ss_pred hhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 505 VGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
+...|++++|...+++. +..++ ..+...+..++...|+.++|...+.++++.....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 89999999999998876 22222 3455666778899999999999999999876543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=1.5e-06 Score=78.24 Aligned_cols=147 Identities=9% Similarity=0.090 Sum_probs=112.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 510 (648)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467778887776444322221 11 012236677788888888776 345588889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816 511 LIEARSFIERM-PVKP-DVLVWQALLGAC-SIHGD--SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+...|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 5556 466677777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 037816 586 RMKEMG 591 (648)
Q Consensus 586 ~m~~~~ 591 (648)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998854
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=1.3e-06 Score=82.18 Aligned_cols=180 Identities=12% Similarity=0.013 Sum_probs=115.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NS---VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV---- 460 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---- 460 (648)
.....+..+...+...|++++|...|+++.. | +. ..+..+..++...|++++|...++++.+.. |+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 3445566666777777888888777776642 2 21 345666677777778888888887777643 3211
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037816 461 TFLSLLHACSHV--------GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ 531 (648)
Q Consensus 461 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 531 (648)
++..+..++... |++++|.+.++.+... .|+ ...+..+..... ..... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence 333444444433 5677777777777653 232 222222211100 00000 00112
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+...+.+.|++++|+..++++++..|+++ ..+..++.++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678899999999999999999877654 68899999999999999999999988764
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=3.1e-05 Score=77.99 Aligned_cols=196 Identities=9% Similarity=-0.042 Sum_probs=99.4
Q ss_pred CCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHH-HHHHHHHHHhcCCChhHHHHhhccCC--C
Q 037816 41 LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMP--M 117 (648)
Q Consensus 41 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--~ 117 (648)
|+.+..|..+...+...|+.+.+...+....+..+. .++.. ........+...|++++|...++... .
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA---------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 444455556666666666666666666665555100 11211 11112223455677777777766654 2
Q ss_pred C-CcccHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChh
Q 037816 118 R-DTVSWNTMVSGFLR----NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192 (648)
Q Consensus 118 ~-~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (648)
| |...+.. ...+.. .+....+.+.+.. ..+..|+.......+...+...|+++.|...++...+.. +.+..
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 2 2222221 112222 2333344444333 112223333233334445666667777777776666654 44455
Q ss_pred HHHHHHHHhHhcCChhHHHHHhcccCCC-----Cc--ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816 193 VGNALITSYFKCGSSSSGRKVFGEMRVR-----NV--ITWTAVISGLVQNQLYEEGLKLFVKMH 249 (648)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~a~~~~~~m~ 249 (648)
.+..+..++...|++++|...+++.... +. ..|..+...+...|++++|+.+|++..
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5666666666777777777776655421 11 123345566666777777777776664
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=9.1e-05 Score=68.59 Aligned_cols=308 Identities=11% Similarity=0.082 Sum_probs=187.5
Q ss_pred HHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHH---HHHHHCCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHhhcc
Q 037816 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI---SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL-SSVMACSGL 270 (648)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~ 270 (648)
--+...+...|++..|+.-|....+-|...|.++. ..|...|+...|+.=|....+ .+||-..-. .-...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 34455566667777777777777766666666654 456667777777777766655 456533211 111233455
Q ss_pred CChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037816 271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350 (648)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 350 (648)
|.++.|..=|+.+++...... ....++.+.--.++-+.+ ...+..+...|+...|+.....+.
T Consensus 120 Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHH
Confidence 666666666666555431110 011111111111111111 122344556777777888777777
Q ss_pred HcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCh----
Q 037816 351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNS---- 424 (648)
Q Consensus 351 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---- 424 (648)
+-. +.|...+..-..+|...|.+..|+.-+...-+.. ..++...--+-..+...|+.+.++...++..+ ||.
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 643 4455566666677777788777777666666554 33344444456667777888877777776653 221
Q ss_pred hHHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 037816 425 VSWNSM---------IAAFARHGNGFKALELYEEMKLEGVEPTDV---TFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492 (648)
Q Consensus 425 ~~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 492 (648)
..|..| +......++|.++++..+...+........ .+..+-.++...+++.+|++...++.. +.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---ID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cC
Confidence 122221 223455678888888888887754221222 344566777888999999999999975 45
Q ss_pred C-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037816 493 P-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD 526 (648)
Q Consensus 493 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 526 (648)
| |..++.--..+|.-...++.|+.-|+.. ...++
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 6 5889988899999999999999999887 44443
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=5.6e-05 Score=68.55 Aligned_cols=312 Identities=11% Similarity=0.066 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHH-HHHHHhh
Q 037816 92 WNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSACD 167 (648)
Q Consensus 92 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-~ll~~~~ 167 (648)
+.+.+..+.+..++++|++++..-.+. +....+.|..+|....++..|-+.|+++-... |... -|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~-qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELE-QYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHH-HHHHHHHHHHH
Confidence 445556667788999999998877643 55667778888999999999999999987764 4443 332 2344556
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--hHhcCChhHHHHHhcccC-CCCcccHHHHHHHHHHCCCchHHHHH
Q 037816 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITS--YFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
..+.+..|.++...|... |+...-..-+.+ .-..+++..+..+++..+ +.+..+.+.......+.|+++.|++-
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 667777888877776532 222222222222 234688999999999988 46667777777777899999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH----HHHHHHHHhcCCHHH-HHHHHHhcc
Q 037816 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE----SALMDMYSKCGSVED-AWQIFEFAE 319 (648)
Q Consensus 245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~-A~~~~~~~~ 319 (648)
|+...+-+--.....|+..+ +..+.|+.+.|.+...++.++|+...+..- ...+++ ...|+.-. +..-
T Consensus 167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHH-----
Confidence 99986644333455676555 445678999999999999998864322110 000000 00000000 0000
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 037816 320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398 (648)
Q Consensus 320 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 398 (648)
-+..+|.-...+.+.++++.|.+.+..|..+. -..|++|...+.-. ...+++....+-++.+...+ |-...|+..
T Consensus 240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 01123333334556677777777666664221 23455555443321 12233333444444444442 344566777
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC
Q 037816 399 LINMYSKCGDLEDSIKVFSRMA 420 (648)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~ 420 (648)
++-.||+..-++-|-+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 7777777777777777776544
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=5.3e-05 Score=79.72 Aligned_cols=443 Identities=13% Similarity=0.079 Sum_probs=227.0
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITS 200 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 200 (648)
.|..|...|...-+...|...|...-+.. ++..+....+...+++..+++.|..+.-..-+.. ...-...|....-.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45555555555555566666666655543 4444455566666666666666665521111100 01111222233334
Q ss_pred hHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHH--hhccCChHH
Q 037816 201 YFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA--CSGLQALCE 275 (648)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~ 275 (648)
|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.+... +.|+. +|...-.+ -+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHH
Confidence 5556666666666665542 2445566666667777777777777666644 33432 22222211 133455666
Q ss_pred HHHHHHHHHHhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CCcccHHHHHHHHHHcCC
Q 037816 276 GRQIHGILWKLA------LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-----------LDGVSMTVILVGFAQNGF 338 (648)
Q Consensus 276 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~ 338 (648)
+...+....... ..--..++-.+...+.-.|-..+|.+.++.-.+ .+...|-.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a--------- 719 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA--------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------
Confidence 655555543221 000111111111122222222233333322111 011111111
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----C--
Q 037816 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL---G---LGKQIHSLIIKSDFTSNPFVNNGLINMYSK----C-- 406 (648)
Q Consensus 339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-- 406 (648)
..|..+|-... .. .|+.....++..-....+.. + .+.+.+-.-. ....++..|..|+..|.+ .
T Consensus 720 -sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 720 -SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred -hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCC
Confidence 12223333322 11 23322222222212222222 1 1111111111 112223444444443333 1
Q ss_pred --CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816 407 --GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481 (648)
Q Consensus 407 --g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 481 (648)
.+...|...+.... ..+..+||.|.-. ...|++.-|.-.|-+-.... +-+..+|..+.-.+....+++.|...
T Consensus 795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHH
Confidence 12335666666544 3466777766554 55677777777776655532 33566777777778889999999999
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHH----
Q 037816 482 LKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPDVLVWQALLGACSIHGDSEMGKYA---- 549 (648)
Q Consensus 482 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~---- 549 (648)
|...+. +.| +...|-.........|+.-++..+|..- +--|+..-|.....-....|+.++-+..
T Consensus 873 f~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 873 FSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 998865 455 6666666666666778888888887652 3345555555555555666666655544
Q ss_pred ------HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 550 ------AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 550 ------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+++.+...|+...+|...+....+.+.+++|.+...+..
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444456789999999999999999999999888877753
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.64 E-value=0.0011 Score=69.47 Aligned_cols=505 Identities=12% Similarity=0.040 Sum_probs=265.9
Q ss_pred HhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHHHHhhccCCC---CCcccHHHHHH
Q 037816 54 SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNAVKLFDDMPM---RDTVSWNTMVS 128 (648)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~ 128 (648)
....+++..|..-.+++.+. .|+.. |...+.+ +.|.|+.++|..+++.... .|..|...+-.
T Consensus 19 ~ld~~qfkkal~~~~kllkk------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN 85 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHH
Confidence 44567889999999999988 55543 3333343 5788999999999988763 37788999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC-C-
Q 037816 129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG-S- 206 (648)
Q Consensus 129 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~- 206 (648)
+|.+.|+.++|..+|++..+.. |+.. ....+..++.|.+.+..-.++--++.+. ++...+.+=++++.+.... .
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--P~ee-ll~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--PSEE-LLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCC
Confidence 9999999999999999988765 7755 8888899999998888777776666663 3455555555555554431 1
Q ss_pred --------hhHHHHHhcccCCCC--ccc---HHHHHHHHHHCCCchHHHHHHH-HHHhCCCCCChhhHHHHHHHhhccCC
Q 037816 207 --------SSSGRKVFGEMRVRN--VIT---WTAVISGLVQNQLYEEGLKLFV-KMHLGLINPNSLTYLSSVMACSGLQA 272 (648)
Q Consensus 207 --------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~ 272 (648)
..-|.+.++.+.+.+ ..+ ...-...+-..|++++|++++. ..-+.-...+...-+--+..+...++
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~ 241 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR 241 (932)
T ss_pred cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence 233455555554332 111 1122344556788999999883 33333333334444455666777888
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHH----------------hcCCHHHHHHHHHhccCC-CcccHHHHHHHHHH
Q 037816 273 LCEGRQIHGILWKLALQSDLCIESALMDMYS----------------KCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQ 335 (648)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 335 (648)
+.+..++..++...|... |...++.+. ..+..+...+...+.... ...+|-+-+.+..+
T Consensus 242 w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr 317 (932)
T KOG2053|consen 242 WQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKR 317 (932)
T ss_pred hHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHH
Confidence 888888888888876332 322222211 122233333332222221 23344444444333
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCchh---HHHHHHHHHHhCC
Q 037816 336 ---NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPF---VNNGLINMYSKCG 407 (648)
Q Consensus 336 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~---~~~~li~~~~~~g 407 (648)
-|+.++++..|-+-. |-.| .|..=+..|...=..++-..++.......- ..+.. .+...+....-.|
T Consensus 318 ~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G 392 (932)
T KOG2053|consen 318 YKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLG 392 (932)
T ss_pred hcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhh
Confidence 366666554432221 1111 111111111111122222222222221110 00000 0111111111112
Q ss_pred C-----HHHHHHHHhhc----CC---------CC---------hhHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC
Q 037816 408 D-----LEDSIKVFSRM----AP---------RN---------SVSWNSMIAAFARHGNGF---KALELYEEMKLEGVEP 457 (648)
Q Consensus 408 ~-----~~~A~~~~~~~----~~---------~~---------~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~~~~p 457 (648)
. -+....++.+. .. |+ .-+-+.|+..+-+.++.. +|+-+++.-.... +-
T Consensus 393 ~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~h 471 (932)
T KOG2053|consen 393 LYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PH 471 (932)
T ss_pred ccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-Cc
Confidence 1 11111111111 10 11 123456667777777654 3444444444432 23
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHH
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP--DVLVWQALL 534 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~ 534 (648)
|..+-..+|+.|+-.|-+..|...|+.+.-+ .+..|..-|. +...+...|++..+...++.. .+-. -..+-..+.
T Consensus 472 nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~ 549 (932)
T KOG2053|consen 472 NFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA 549 (932)
T ss_pred cHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 4455566777787778888888888877654 5555554443 334455566777766666554 1110 011112222
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
. ..+.|.+.+-.++..--.++.-.. ..+=+.....+...++.++-...+..|.
T Consensus 550 ~-AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 550 L-AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred H-HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 2 335666665554433322332221 1233445566667778777777777665
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.63 E-value=0.00073 Score=66.78 Aligned_cols=132 Identities=9% Similarity=0.076 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
|-|+.+|+.||+-+... .++++.+.++.+..+ ....|..-|..-.+..+++....+|.+.+..-+..|--.+|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 67899999999988766 999999999999843 56778899999999999999999999988765443333344443
Q ss_pred HHHhhccCCh--HHHHHHHH-HHHHhCCCCC-hhHHHHHHHHh---------HhcCChhHHHHHhcccC
Q 037816 163 LSACDRSELS--LVSKMIHC-LVYLCGYEEE-VTVGNALITSY---------FKCGSSSSGRKVFGEMR 218 (648)
Q Consensus 163 l~~~~~~~~~--~~a~~~~~-~~~~~~~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~ 218 (648)
++--...+.- +...+.++ .+.+.|..+- ...|+..+..+ ..+.+++...++++++.
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 3332222222 22222333 3344564433 34565555443 34456777888888876
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=4.7e-06 Score=90.21 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=167.8
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 461 (648)
|.+...|-..|......++.++|+++.++..+. -...|-++++.-..-|.-+...++|+++.+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455667778888888899999999998887632 24578888877777788889999999998742 23456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALLGAC 537 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 537 (648)
|..|...|.+.+.+++|.++++.|.++++ -....|...++.+.+..+-+.|.+++.++ ..-|- .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999655 77888999999999999999999999887 33343 34444455556
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 596 (648)
.+.||.+++..+|+..+...|.....|..+++.-.+.|+.+.++.+|++....++.+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 78999999999999999999999999999999999999999999999999998886653
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=5.2e-08 Score=58.69 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=29.5
Q ss_pred CCCChHHHHHHHHHHHhcCCChhHHHHhhccCC
Q 037816 84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP 116 (648)
Q Consensus 84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 116 (648)
|++||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 459999999999999999999999999999885
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=2.6e-06 Score=72.44 Aligned_cols=108 Identities=6% Similarity=-0.138 Sum_probs=68.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI 539 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 539 (648)
+..+...+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445556666777777777777654 22336666666666677777777777777666 3333 45566666666667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
.|++++|+..++++++..|+++..+...+.+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777766665555544
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=1.5e-06 Score=73.79 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=92.1
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 557 (648)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 3444 3556788899999999999999998 5555 57788999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|.++.++..++.++...|++++|+..+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998743
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.4e-07 Score=56.81 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=27.5
Q ss_pred CCCCChhHHHHHHHHhHhcCChhHHHHHhcccC
Q 037816 186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218 (648)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (648)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888774
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=1.6e-05 Score=80.97 Aligned_cols=212 Identities=11% Similarity=-0.012 Sum_probs=140.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCC
Q 037816 362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN 439 (648)
Q Consensus 362 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 439 (648)
..+...+...|-...|..+++++. .+.-++.+|+..|+..+|..+..+.. +|+...|..+.......--
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 334444455555555555554432 33445556666666666655554332 3455555555555444444
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519 (648)
Q Consensus 440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (648)
+++|.++.+..-.+ .-..+.....+.++++++.+.|+.-.+. .+....+|-.+..+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 55555555443221 1111112223356677777777666542 22366777777888888999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 520 RM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 520 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
.. ...|| ...|+.+-.+|.+.++-.+|...++++++-+-.+..++....-...+.|.+++|.+.++++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 87 66776 66799999999999999999999999999888888899888888999999999999999987654
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=1.1e-05 Score=86.11 Aligned_cols=141 Identities=11% Similarity=0.041 Sum_probs=106.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
++..+-.|.....+.|++++|..+|+...+ +.|+. .....+...+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 567777788888888888888888888887 45754 4566677788888888888888888876 233367777778
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 502 VDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
..++...|++++|.++|++. ...|+ ...+..+..++...|+.++|...|+++++...+....|+.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 88888888888888888887 23333 67778888888888888888888888887765554444433
No 117
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=8.7e-06 Score=80.61 Aligned_cols=247 Identities=14% Similarity=0.039 Sum_probs=172.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 037816 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411 (648)
Q Consensus 332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (648)
-+.+.|+..+|.-.|+..+... +-+...|..|-......++-..|+..+.+..+.. +.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3566777777777777776654 3455666666666777777777777777777665 5566677777777877777777
Q ss_pred HHHHHhhcCCC-ChhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816 412 SIKVFSRMAPR-NSVSWNSMI---------AAFARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVGLVNKGME 480 (648)
Q Consensus 412 A~~~~~~~~~~-~~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 480 (648)
|.+.++.-... ....|.... ..+..........++|-++. ..+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 77777654210 000000000 11111222334445554444 45545777778888888899999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816 481 FLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 481 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 557 (648)
.|+.+.. ++| |..+||.|.-.++...+.++|++.|++. .++|. +.....|.-+|...|.+++|..+|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999976 466 8889999999999999999999999998 88887 5566778888999999999999999998765
Q ss_pred CC-----C-----CccHHHHHHHHHhcCChHHHHHH
Q 037816 558 PD-----S-----PAPYILMANIYSCSGRWKERAKA 583 (648)
Q Consensus 558 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 583 (648)
+. + ..+|..|=.++.-+++.+-+.++
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 44 1 13666666667777776655443
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=1.2e-05 Score=67.00 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=100.4
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+....-.+...+...|++++|.++|+-. .+.|. ..-|-.|..++...|++++|+..|.++..++|+++.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555667778899999999999988 55664 666888888899999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816 572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 636 (648)
...|+.+.|.+.|+...... ..+|....+.++.+..++.+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999986642 2457788888888777776654
No 119
>PLN02789 farnesyltranstransferase
Probab=98.48 E-value=7.4e-05 Score=72.35 Aligned_cols=211 Identities=11% Similarity=0.044 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHH
Q 037816 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG-DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNG--FKALEL 446 (648)
Q Consensus 373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~ 446 (648)
..++|..+...+++.. +-+..+|+....++...| ++++++..++++.. .+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 4444444444444432 223334443334444445 45666666666542 3444555444444445542 566777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc---CCH----HHHHHHHH
Q 037816 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA---GLL----IEARSFIE 519 (648)
Q Consensus 447 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 519 (648)
++++.+.. +-|..+|.....++...|+++++++.++++.+. -.-+...|+.....+.+. |.. ++++++..
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 77777644 235667777777777777788888888888763 233555666555554443 222 35556654
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC------------------
Q 037816 520 RM-PVKP-DVLVWQALLGACSIH----GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG------------------ 575 (648)
Q Consensus 520 ~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 575 (648)
++ ...| |...|+.+...+... +...+|...+.++...+|.+..+...++++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 44 4445 456677777777662 44566888888888888888888889999888642
Q ss_pred ChHHHHHHHHHH
Q 037816 576 RWKERAKAIKRM 587 (648)
Q Consensus 576 ~~~~A~~~~~~m 587 (648)
..++|.++++.+
T Consensus 288 ~~~~a~~~~~~l 299 (320)
T PLN02789 288 DSTLAQAVCSEL 299 (320)
T ss_pred cHHHHHHHHHHH
Confidence 346788888877
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.8e-05 Score=71.16 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=118.7
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816 400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 479 (648)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888877765554333221 01223567788888888888765 457888999999999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHh-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDMV-GRAGL--LIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999873 334788888888864 67777 59999999998 5555 57778888889999999999999999999
Q ss_pred hcCCCCCccH
Q 037816 555 LAQPDSPAPY 564 (648)
Q Consensus 555 ~~~p~~~~~~ 564 (648)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998876444
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.4e-05 Score=71.55 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (648)
..+-..+...|+-+....+..+..... .-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 334444555555555555555543211 12333444455555666666666666666654 344566666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816 508 AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
.|++++|..-|.+. .+.| ++..++.+...+.-.|+.+.|..++..+....+.+..+-..++.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666555554 3333 24445555555556666666666666665555555566666666666666666665543
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.6e-05 Score=69.84 Aligned_cols=127 Identities=16% Similarity=0.077 Sum_probs=71.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIH 540 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 540 (648)
..+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++. .-.+|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3344445555555555555555432 22334445555566666666666666666655 3334555566666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|+++.|...|.+++++.|.++.+++.++..|.-.|+++.|..++......+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 666666666666666666666666666666666666666666665555443
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.2e-05 Score=81.77 Aligned_cols=192 Identities=15% Similarity=0.175 Sum_probs=163.5
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466 (648)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 466 (648)
.+.+|-...-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+..+ -+||+..|..+.
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 3567777788888999999999999999999764 677889999999999999999988887 368999999999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 544 (648)
+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9888888899999998877542 2222333344579999999999875 5444 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
.|.+.|-....+.|++...|+.+..+|.+.|+-.+|...+++..+-...
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999987743
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.00015 Score=70.93 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=99.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhc
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRA 508 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 508 (648)
...+...|++++|+..++.+... .|+ +.-.......+...++.++|.+.++++... .|+ ....-.+.++|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33445678888888888887774 354 444445556778888888888888888753 454 55666777888888
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 509 GLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 509 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
|++.+|+.++++. ..+-|+..|..|..+|...|+..++.... +..|...|++++|+..+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 8888888888877 44446777888888888888877665543 3457777888888888887
Q ss_pred HHhCC
Q 037816 587 MKEMG 591 (648)
Q Consensus 587 m~~~~ 591 (648)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 77653
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=0.00013 Score=64.90 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 395 VNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
+|..++-+....|+.+.|...++.+.. | +...-..-...+-..|++++|+++++.+.+.+ +.|..++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 344555566677888888887777653 2 11111111223445789999999999999876 4466677666666666
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMG 546 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A 546 (648)
.|+.-+|++-+.+..+ .+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+.-. .+.+.|
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7777789988888887 47789999999999999999999999999998 4455 455566666665443 478889
Q ss_pred HHHHHHHHhcCCCCCccHHHH
Q 037816 547 KYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 547 ~~~~~~~~~~~p~~~~~~~~l 567 (648)
..+|.++++++|.+...+..+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 999999999999665544433
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00029 Score=63.22 Aligned_cols=249 Identities=15% Similarity=0.085 Sum_probs=147.1
Q ss_pred HHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHH-H
Q 037816 302 YSKCGSVEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-K 378 (648)
Q Consensus 302 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~ 378 (648)
+.-.|++..++..-..... .++..-..+-++|...|.+.....- +.. |-.|....+..+.......++.+.- .
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3344555555544433322 2222233345566666655433221 111 1133334444444434334443332 3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 037816 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 458 (648)
++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|...+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 344444444444443444444556788888888888887733 3333333355666778888888888888862 35
Q ss_pred HHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 037816 459 DVTFLSLLHACS----HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQA 532 (648)
Q Consensus 459 ~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 532 (648)
..|.+.|..++. ..+.+..|.-+|+++.+ ..+|++.+.+....++...|++++|..++++. +...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 566666666653 34567888888888876 47788888888888888888888888888877 44446666666
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHhcCCCCC
Q 037816 533 LLGACSIHGDS-EMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 533 l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 561 (648)
++.+-...|.. +.-.+.+.++....|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66655555544 444457777777777654
No 127
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=4.4e-05 Score=71.65 Aligned_cols=182 Identities=13% Similarity=0.037 Sum_probs=127.2
Q ss_pred CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---
Q 037816 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN---PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSV--- 425 (648)
Q Consensus 355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~--- 425 (648)
......+......+...|+++.|...++.+.... +.+ ...+..+..++...|++++|...++++.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888999999999999999988764 222 24667788999999999999999998863 2 222
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816 426 SWNSMIAAFARH--------GNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496 (648)
Q Consensus 426 ~~~~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 496 (648)
++..+..++... |++++|.+.++++.+.. |+.. ....+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH---------H
Confidence 455555566554 78899999999998854 5432 2222211100 000 000 0
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 558 (648)
....+...|.+.|++++|...+++. .. .| ....+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124566788999999999988887 22 23 356788888999999999999998888876655
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00014 Score=78.50 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
++-.+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33344455556666777777777777777776666666666655
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=1.1e-05 Score=68.31 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+......+...+...|++++|.+.++.. ...| +...|..+..++...|++++|...++++++..|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3344555666666677777777777665 3233 4566666667777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037816 572 SCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~ 590 (648)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777664
No 130
>PLN02789 farnesyltranstransferase
Probab=98.29 E-value=0.00066 Score=65.82 Aligned_cols=222 Identities=11% Similarity=0.061 Sum_probs=140.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409 (648)
Q Consensus 332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (648)
.+...++.++|+.+..++++.. |+.. .|..--.++...| +++++...++.+.+.. +.+..+|+...-.+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 3445667777888877777643 4332 3333333444445 4677777777777665 44445565544445555542
Q ss_pred --HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---Cc----HHH
Q 037816 410 --EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV---GL----VNK 477 (648)
Q Consensus 410 --~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~ 477 (648)
+++..+++.+. +.|..+|+...-++...|+++++++.++++++.+ .-|...|+.....+.+. |. .+.
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 56677776665 4577788888888888899999999999999876 23555665555444443 22 245
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHhhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC----------
Q 037816 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRA----GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG---------- 541 (648)
Q Consensus 478 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---------- 541 (648)
...+..++... .+-|...|+.+...+... ++..+|.+++.+. ...| +......|+..|+...
T Consensus 202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 67777666652 344788888888888773 3456688887776 4344 4666777888877532
Q ss_pred --------ChHHHHHHHHHHHhcCCC
Q 037816 542 --------DSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 542 --------~~~~A~~~~~~~~~~~p~ 559 (648)
..++|..+++.+.+.+|-
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666444443
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.00019 Score=76.86 Aligned_cols=142 Identities=10% Similarity=0.088 Sum_probs=116.4
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037816 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFL 463 (648)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~ 463 (648)
..+.++..+..|.....+.|.+++|+.+++... .| +......+...+.+.+++++|+..+++..... |+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence 456678889999999999999999999999876 34 56677788899999999999999999999864 64 55666
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037816 464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQAL 533 (648)
Q Consensus 464 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 533 (648)
.+..++.+.|++++|..+|+++.. ..+-+..++..+...+.+.|+.++|...|++. ...|-...|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 777888999999999999999987 33446888999999999999999999999988 334444444444
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.26 E-value=0.00019 Score=78.32 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=171.3
Q ss_pred CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHH
Q 037816 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTS---NPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWN 428 (648)
Q Consensus 355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 428 (648)
+-+...|-..|......++.+.|+++.+++... ++.- -..+|.++++.-..-|.-+...++|+++.+- ....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 344566777777788888888888888877643 2211 2346777777777778888889999988753 356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhh
Q 037816 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVG 506 (648)
Q Consensus 429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 506 (648)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+. ++- ........++.-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999975 3456778889999999999999999999999873 333 5666777888888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccHHHHHHHHHhc-CChHHHH
Q 037816 507 RAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCS-GRWKERA 581 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~~A~ 581 (648)
+.|+.+++..+|+.. .-.| -...|+.++..-.++|+.+.+..+|++++.+. |.....+.-.---|.+. |+-+.+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999999887 2223 46679999999999999999999999998765 55655555444445544 5544444
Q ss_pred HH
Q 037816 582 KA 583 (648)
Q Consensus 582 ~~ 583 (648)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00012 Score=71.42 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=109.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 545 (648)
.+...|.++.|+..++.+.. ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 35677899999999999987 45568888888999999999999999999998 66777 6667788899999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|+.+++.....+|+++..|..++.+|...|+..+|....-+.....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988876543
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00026 Score=63.56 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=156.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (648)
++-+.-.|++..++..-...... +.+...-..+-++|...|+..... ..+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 34455667777777665554332 233344444555665555543221 1122111 33333333333333333443
Q ss_pred HHHH-HHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816 410 EDSI-KVFSRMAPR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484 (648)
Q Consensus 410 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 484 (648)
++-. ++.+.+..+ +......-...|++.|++++|++.++... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 223333322 22233333456889999999999887722 222222334456778899999999999
Q ss_pred hHHhcCCCCChhHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816 485 MTEVHRISPRAEHYACVVDMVG----RAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 558 (648)
|.+- .+..+.+.|..++. -.+...+|.-+|+++ +..|++.+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9762 45566666666654 346799999999999 5789999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 037816 559 DSPAPYILMANIYSCSGRWKERA-KAIKRMKE 589 (648)
Q Consensus 559 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 589 (648)
+++.+...++.+-...|+-.++. +.+..++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999888888876654 45555544
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.0004 Score=75.23 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHH
Q 037816 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI 229 (648)
Q Consensus 150 ~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 229 (648)
+..|+....+..|+..+...++++++.++.+...+.. +.....|-.+...+...++.+.+..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 3444444455555555555555555555555333322 11222222222244444544443322 233
Q ss_pred HHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 037816 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE 309 (648)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 309 (648)
..+....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+|+++++.. +.|+.+.|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3333444443333344444332 2333456667777777777777777777777776 66677778888888887 888
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-C
Q 037816 310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-D 388 (648)
Q Consensus 310 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~ 388 (648)
+|.+++.+.. ..+...+++.++.+++.++.... +.+...+..++ +.+... |
T Consensus 167 KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------------~ki~~~~~ 218 (906)
T PRK14720 167 KAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------------RKVLGHRE 218 (906)
T ss_pred HHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcC-cccchHHHHHH----------------HHHHhhhc
Confidence 8888766543 34677778888888888887753 22222222222 222221 2
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 037816 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFA 435 (648)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 435 (648)
..--..++..+-..|...++++++..+++.+.+ .|.....-++.+|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 233344555566667777777777777776653 34445555555554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=4.5e-05 Score=64.41 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037816 446 LYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV 523 (648)
Q Consensus 446 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 523 (648)
.+++.... .| +......+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555553 35 3445666677788889999999999988773 3447888888999999999999999998887 44
Q ss_pred CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816 524 KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563 (648)
Q Consensus 524 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 563 (648)
.| +...+..+..++...|++++|...++++++..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 46777778888999999999999999999999987553
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=3.8e-05 Score=75.76 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=87.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI 539 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 539 (648)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++. ...| |...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555566667777777777777653 233 3445666666677777777777666 3333 45555555566788
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
.++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888888888888888888899998888887764
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.0003 Score=62.66 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
.|..++-+....|+.+.|...++.+..+- |... .-..-.--+-..|.+++|.++++.+.+. -+.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45566677778899999999999998763 4432 2222222356689999999999999984 35577788777777
Q ss_pred hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC---ChHH
Q 037816 505 VGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG---RWKE 579 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 579 (648)
.-..|+--+|++-+... .+..|...|.-+...|...|++++|.-.+++++=.+|-++..+..+++.+...| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888888887777 677899999999999999999999999999999999999999999999988776 4667
Q ss_pred HHHHHHHHHhCCC
Q 037816 580 RAKAIKRMKEMGV 592 (648)
Q Consensus 580 A~~~~~~m~~~~~ 592 (648)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8899998887543
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00011 Score=72.47 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 473 (648)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4445667777778899999999999988777777778888888888999999999988653 336666666667788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 525 (648)
+++.|+.+.+++... .+-+..+|..|..+|...|+++.|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999762 33367799999999999999999999999885443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00011 Score=62.85 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=55.3
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEM 545 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 545 (648)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+ ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555554311111 1222333445555555555555555555 112322 122334445555666666
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
|+..++.. ...+-.+..+...+++|.+.|++++|+..|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665442 22223344555666666666666666666654
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=7.7e-06 Score=50.10 Aligned_cols=35 Identities=34% Similarity=0.533 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCCh
Q 037816 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS 257 (648)
Q Consensus 223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 257 (648)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.017 Score=57.54 Aligned_cols=431 Identities=9% Similarity=0.078 Sum_probs=236.2
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 037816 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198 (648)
Q Consensus 119 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (648)
|+.+|+.||+-+..+ ..+++.+.++++.. ..|.....|..-+..-.+.++++..+.+|...+..-+ +...|..-+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 888999999987666 89999999999875 4677776888888888889999999999988876543 355565555
Q ss_pred HHhHh-cCChhH----HHHHhccc------CCCCcccHHHHHHH---------HHHCCCchHHHHHHHHHHhCCCCC---
Q 037816 199 TSYFK-CGSSSS----GRKVFGEM------RVRNVITWTAVISG---------LVQNQLYEEGLKLFVKMHLGLINP--- 255 (648)
Q Consensus 199 ~~~~~-~g~~~~----A~~~~~~~------~~~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~~~~p--- 255 (648)
+--.+ .|+... ..+.|+-. .-.+-..|+..+.. +..+.+.+...++|+++...-+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43322 233222 12222211 11233345544433 233445566677777775421110
Q ss_pred ---ChhhHHHHHHHh-------hccCChHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCHHH--HHHHHHhccC-
Q 037816 256 ---NSLTYLSSVMAC-------SGLQALCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVED--AWQIFEFAEE- 320 (648)
Q Consensus 256 ---~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~- 320 (648)
|-.+|..-|+-. -+...+-.|.++++++.. .|+..+..+ .-..|-.++ ..+++....+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence 111121111111 112334455555555543 232211111 000011111 1111111100
Q ss_pred --CC--------------cccHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-------hhH
Q 037816 321 --LD--------------GVSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-------LGL 376 (648)
Q Consensus 321 --~~--------------~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~ 376 (648)
.| ..+|+..+..+.-. .-|-++...+...- +.+...|+ .++
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s---------------~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS---------------DLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh---------------HHHHHhcccccchhhHHH
Confidence 00 00111111111000 00111111111110 01112222 344
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---CHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCG---DLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEE 449 (648)
Q Consensus 377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 449 (648)
+..+++..+..-...+..+|..+...--..- +.+.....++++. ..-..+|..+++.-.+..-...|..+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 5555555544333334444443332211111 2344444444443 22345778888888888888999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC---CCCC
Q 037816 450 MKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKP 525 (648)
Q Consensus 450 m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p 525 (648)
..+.+..+ ....+++++..+|. ++..-|.++|+--.++ +..++.--...++-+...++-..|..+|++. .+.|
T Consensus 392 aR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 392 AREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 99888777 66777788876664 6788899999987774 4445556667788888999999999999988 2444
Q ss_pred C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHH
Q 037816 526 D--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKE 579 (648)
Q Consensus 526 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~ 579 (648)
| ...|..++.--...|+.+.+.++-++.....|.+ ...-....+-|.-.+.+..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 4 5789999988889999999999888887666622 1233344455555555443
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.01 E-value=6.8e-06 Score=62.55 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816 508 AGLLIEARSFIERM-PVKP---DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 583 (648)
.|++++|+.+++++ ...| +...+..+..+|.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 2222 344555577778888888888888877 666666666666778888888888888887
Q ss_pred HHH
Q 037816 584 IKR 586 (648)
Q Consensus 584 ~~~ 586 (648)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00046 Score=58.90 Aligned_cols=125 Identities=16% Similarity=0.132 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPT---DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEHYAC 500 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 500 (648)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+... ...|+ ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344445554 4778888888888888754 223 123333456778889999999999988875 32222 234455
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKL 553 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 553 (648)
|...+...|++++|+..++.. +....+..+.....++...|+.++|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888889999999988776 22234556667778888999999999988875
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.2e-05 Score=49.17 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155 (648)
Q Consensus 121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 155 (648)
.+||++|.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999988863
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.2e-05 Score=48.79 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=29.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 037816 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153 (648)
Q Consensus 121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 153 (648)
.+||.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998876
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.97 E-value=8.3e-05 Score=58.02 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=75.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 575 (648)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++....|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888876 44443 4667777788888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 037816 576 RWKERAKAIKRMKEM 590 (648)
Q Consensus 576 ~~~~A~~~~~~m~~~ 590 (648)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887654
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00011 Score=60.44 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=52.1
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHH
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMAN 569 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 569 (648)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++.+....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555556666666555555 22222 2334445555666666666666666666655553 334556666
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 037816 570 IYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 570 ~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++...|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.4e-05 Score=48.60 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC
Q 037816 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255 (648)
Q Consensus 223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 255 (648)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.93 E-value=2.7e-05 Score=56.65 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG-RWKERAKAIKRMKEM 590 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 590 (648)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999998763
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.026 Score=54.71 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (648)
.+..+.-+...|+...|.++-.+..=|+...|...+.+|+..++|++-..+... +-++..|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455556677777777777777777777777777777777777766654321 12346677777777777777
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
.+|..++.++. +..-+..|.++|++.+|.+..-+.
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77777666531 133456677777777776665544
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00024 Score=58.32 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALL 534 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 534 (648)
++..+...+...|++++|...+..+.+.+.-.+ ....+..+..++.+.|++++|.+.++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777777777777777766411111 2345566777777888888888887776 32333 45567777
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 565 (648)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7888888888888888888888888765443
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.82 E-value=0.00039 Score=69.14 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 544 (648)
..+...|+++.|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666552 2235555666666666666666666666665 3334 3445555566666666666
Q ss_pred HHHHHHHHHHhcCCCCCccHHHH
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
+|+..++++++++|.++.+...+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666665544444
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=4.7e-05 Score=54.55 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=50.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...+...|++++|+..++++++..|.++.++..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999988764
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.071 Score=56.66 Aligned_cols=122 Identities=10% Similarity=0.128 Sum_probs=67.6
Q ss_pred cCCChhHHHHhhccCCCCCc-ccHHHHHHHH--HhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHH
Q 037816 101 KCDQMRNAVKLFDDMPMRDT-VSWNTMVSGF--LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM 177 (648)
Q Consensus 101 ~~g~~~~A~~~~~~~~~~~~-~~y~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~ 177 (648)
..+++..|....+.+.++.+ ..|..++.++ .+.|+.++|..+++.....+ +++..|...+-.+|.+.+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35666666666666553221 2244444443 55677777776666655443 3333366666666666777777777
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhHhcCChh----HHHHHhcccCCCCcccHH
Q 037816 178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSS----SGRKVFGEMRVRNVITWT 226 (648)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~ 226 (648)
+++..... -|+......+..+|.|.+++. .|++++...++.--..|+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs 149 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS 149 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence 77666543 344555566666666665543 345555544433333343
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=7.8e-05 Score=68.25 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=85.0
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS 543 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 543 (648)
.-+.+.+++.+|+..|.++++ +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 346678999999999999986 455 8888888999999999999999988877 66665 67799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 544 EMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 544 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
++|++.|+++++++|++......|-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999997444444433
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00021 Score=65.53 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=82.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcC
Q 037816 432 AAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAG 509 (648)
Q Consensus 432 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 509 (648)
.-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+.... +.| ....|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 3466788999999999999984 45 566667778889999999999998888865 455 6788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 037816 510 LLIEARSFIERM-PVKPDVLVWQALLGAC 537 (648)
Q Consensus 510 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 537 (648)
++++|++.|++. .+.|+..+|..=+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999888 8888877776655543
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0013 Score=62.91 Aligned_cols=155 Identities=8% Similarity=0.010 Sum_probs=90.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-------------H
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-------------A 499 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------------~ 499 (648)
++.-.|++++|...-....+.. ..+......-..++...++.+.|...|++... +.|+...- .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHH
Confidence 4555677777777666665532 11222211112233455666777777766643 34432211 1
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 500 CVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
.=.+-..+.|++.+|.+.|.+. ++.|+ ...|.....+..+.|+.++|+.--+++++++|.-..+|..-+.++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1123345667777777777766 44443 34444444555667777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhCC
Q 037816 574 SGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 574 ~g~~~~A~~~~~~m~~~~ 591 (648)
.++|++|++.+++..+..
T Consensus 334 le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 777777777777765543
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0004 Score=61.30 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=64.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
...+..+...+...|++++|...|++. ...|+ ...+..+..++.+.|++++|+..++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344555666666667777777666665 22222 3456677777788888888888888888888887777777777
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHh
Q 037816 570 IYSCSGR--------------WKERAKAIKRMKE 589 (648)
Q Consensus 570 ~~~~~g~--------------~~~A~~~~~~m~~ 589 (648)
++...|+ +++|.+++++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 7777666 4566666666555
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00042 Score=60.97 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=75.2
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 568 (648)
....+..+...+...|++++|+..|++. .+.|+ ..++..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4556677777788888888888888877 33332 357888888999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 037816 569 NIYS-------CSGRWKERAKAIKRM 587 (648)
Q Consensus 569 ~~~~-------~~g~~~~A~~~~~~m 587 (648)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888777666654
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.00075 Score=67.12 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=83.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 509 (648)
....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++.+. -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456678899999999999999865 336678888889999999999999999999873 2347788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037816 510 LLIEARSFIERM-PVKPDVLVWQALL 534 (648)
Q Consensus 510 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 534 (648)
++++|+..|++. .+.|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998 6667655444443
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00069 Score=52.61 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGD 542 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 542 (648)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444455555555555555431 1222344444555555555555555555544 2222 23445555556666666
Q ss_pred hHHHHHHHHHHHhcCC
Q 037816 543 SEMGKYAAEKLFLAQP 558 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p 558 (648)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666655544
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.61 E-value=0.0002 Score=52.72 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=53.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
...|.+.+++++|++.+++++..+|.++..+...+.++...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35688999999999999999999999999999999999999999999999999987553
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=7.6e-05 Score=44.04 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=23.7
Q ss_pred ccHHHHHHHHHHCCCchHHHHHHHHHHhCCC
Q 037816 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLI 253 (648)
Q Consensus 223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 253 (648)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0031 Score=65.59 Aligned_cols=139 Identities=17% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 037816 421 PRNSVSWNSMIAAFARH-----GNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHV--------GLVNKGMEFLKSMT 486 (648)
Q Consensus 421 ~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~~~ 486 (648)
..+...|...+.+.... ++...|..+|++..+. .|+. ..+..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34566666666654332 2266777788887774 3653 3344333322111 11222222222222
Q ss_pred HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.......++..|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11011223344444444444445555555555554 3444444455555555555555555555555555555544
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8.1e-05 Score=43.92 Aligned_cols=31 Identities=29% Similarity=0.691 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 037816 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151 (648)
Q Consensus 121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~ 151 (648)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888763
No 167
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.002 Score=59.62 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCccHHH
Q 037816 492 SPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDSPAPYIL 566 (648)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~ 566 (648)
+-|...|..|...|...|+...|..-|.+. .+.| ++..+..+..++... .+..++..+++++++.+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 448999999999999999999999999887 4444 455666666665433 36778899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 567 MANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 567 l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
++..+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.56 E-value=0.003 Score=55.73 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT--DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 44566666667777777777777777765432221 245666666677777777777777776652 22245555555
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666554444322221 012677888888888888876 4444444444443
No 169
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.56 E-value=0.098 Score=51.28 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHH
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVS-------WNSMIAAFA----RHGNGFKALELYEEMKLEGVEPTDV 460 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~ 460 (648)
.++..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..-+...-+.+|......+ .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345555666666677766666655443 222111 111112222 1112334455666666544 3322
Q ss_pred -HHHHHHH---HHhccCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHHH----Hhhhc---CCHH---HHHHHHHhCCCC
Q 037816 461 -TFLSLLH---ACSHVGL-VNKGMEFLKSMTEVHRISP-RAEHYACVVD----MVGRA---GLLI---EARSFIERMPVK 524 (648)
Q Consensus 461 -~~~~ll~---~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~ 524 (648)
....++. -+-+.|. -++|+++++.+.+ +.| |..+-|.+.. .|..+ ..+. +-..+.++.|+.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 2222332 2445555 7888898888876 333 4433332221 22211 1122 223334455666
Q ss_pred C----CHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 525 P----DVLVWQALLGA--CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 525 p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
| +...-|.|..| +..+|++.++.-.-..+.+..| ++.+|..++-++....+|++|..+++.+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5 34456666666 5678999999998888889999 7899999999999999999999999875
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00024 Score=53.93 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=37.1
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 037816 437 HGNGFKALELYEEMKLEGVE-PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 437 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 514 (648)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35556666666666554311 1223333345555666666666666655 11 112 223333445555555555555
Q ss_pred HHHHH
Q 037816 515 RSFIE 519 (648)
Q Consensus 515 ~~~~~ 519 (648)
+++++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.53 E-value=0.0024 Score=61.16 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 503 (648)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777888888888888999998888543 2234444444333 33356777799999999884 5667888888899
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 504 MVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 333333 4788888888889999999999999988887743
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00011 Score=53.14 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=45.3
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
...|++++|+..+++++...|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999889999999999999999999988887664
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00041 Score=49.60 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=48.8
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|+..++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 466788888889999999999999999999998864
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0095 Score=50.26 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=76.0
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChH
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 578 (648)
...-+...|++++|..+|+-+ -..| +..-|..|..++...+++++|+..|..+..+.++||.++...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999877 2222 45567788888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037816 579 ERAKAIKRMKE 589 (648)
Q Consensus 579 ~A~~~~~~m~~ 589 (648)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998866
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.021 Score=48.69 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC------CCCCCHH
Q 037816 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM------PVKPDVL 528 (648)
Q Consensus 455 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~ 528 (648)
..|+...-..|..++...|+..+|...|++...- -+-.|......+.++....+++..|...+++. .-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 4577777777888888888888888888888762 34447888888888888888888888888877 223443
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
...+.+++...|.++.|+..|+.++.--|. +......+..+.++|+.++|..-+-.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 445677888889999899999888887765 455566667788888877776544443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.43 E-value=0.006 Score=63.52 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhc--------CCHHHHHHHHH
Q 037816 454 GVEPTDVTFLSLLHACSH--V---GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRA--------GLLIEARSFIE 519 (648)
Q Consensus 454 ~~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 519 (648)
+.+.|...|..++++... . ++...|..+|+++.+. .|+ ...+..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345678888888887532 2 3477899999999873 664 45555544444322 22345555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816 520 RM----PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595 (648)
Q Consensus 520 ~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 595 (648)
+. ....++..|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++........+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 53 1334567788787777788999999999999999999 578999999999999999999999999988654433
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0021 Score=61.51 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLIEARSFIERM--PVKPDVLVWQALLGA 536 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 536 (648)
.+|..+++.+-+.+..+.|..+|.++.+. -..+..+|......-.. .++.+.|.++|+.. .+..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999863 33355666666665334 56677799999998 455677889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...|+.+.|..+|++++...|.+. .+|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998876654 58889999888999999999999998763
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.36 E-value=0.0024 Score=49.50 Aligned_cols=80 Identities=13% Similarity=0.034 Sum_probs=67.6
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHhhccC--------ChHHHHHHHHHHHHhcCCCchhHHH
Q 037816 226 TAVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQ--------ALCEGRQIHGILWKLALQSDLCIES 296 (648)
Q Consensus 226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 296 (648)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456777777999999999999999999 999999999999887653 2445778899999999999999999
Q ss_pred HHHHHHHhc
Q 037816 297 ALMDMYSKC 305 (648)
Q Consensus 297 ~l~~~~~~~ 305 (648)
.++..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 998877653
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.36 E-value=0.16 Score=48.88 Aligned_cols=276 Identities=16% Similarity=0.150 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHHhcc---CCCcccHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhccCChhHH
Q 037816 305 CGSVEDAWQIFEFAE---ELDGVSMTVILVG--FAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLG 377 (648)
Q Consensus 305 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 377 (648)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.-..-+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 345555555443322 2344433334332 34468888888888888652 2221 222333334467788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 037816 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-----PRNSV--SWNSMIAAFA---RHGNGFKALELY 447 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~ 447 (648)
.++-...-..- +.-.....+.+...|..|+++.|+++.+.-. +++.. .-..|+.+-. -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 77776665443 3445677888899999999999999987654 33332 1222222211 123456666666
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----C
Q 037816 448 EEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----P 522 (648)
Q Consensus 448 ~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 522 (648)
.+..+ +.||-. .-..-..++.+.|+..++-.+++.+.+. .|.+.++... .+.+.|+. +..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 55555 567644 3334557789999999999999999764 6666655433 34555653 22222222 3
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC
Q 037816 523 VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS-GRWKERAKAIKRMKEMGVDK 594 (648)
Q Consensus 523 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~ 594 (648)
.+|+ ..+...+..+....|++..|..-.+.+....|.. .+|..|+++-... |+-.++.+++-+..+..-.|
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 4554 6667777888899999999999999999998885 7888888887654 99999999999988865554
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0032 Score=48.81 Aligned_cols=77 Identities=14% Similarity=0.062 Sum_probs=65.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 329 ILVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDT--------SLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45566677999999999999999999 999999999999887543 244667789999999999999999999
Q ss_pred HHHHHh
Q 037816 400 INMYSK 405 (648)
Q Consensus 400 i~~~~~ 405 (648)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 988765
No 181
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.18 Score=49.01 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHH
Q 037816 91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG 139 (648)
Q Consensus 91 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 139 (648)
.|..+...-...|+.+-|..+++.=+.+. .=|-.+.+.|+.+.|
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~A 45 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELA 45 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHH
Confidence 35566677777899999998887655431 113444445555544
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.32 E-value=0.13 Score=49.55 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhcc-CChHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816 225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYS 303 (648)
Q Consensus 225 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (648)
|...+..|...|++..|-+++..+-+ .+... |+++.|.+.|+...+ .|.
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~---------------~y~ 146 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAE---------------LYE 146 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHH---------------HHH
Confidence 34445666667777666666555422 23333 556666655554432 222
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHhccCChhHH
Q 037816 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-----IDPN-MVSAVLGVFGVDTSLGLG 377 (648)
Q Consensus 304 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a 377 (648)
..|....+.++ +..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++-.|
T Consensus 147 ~e~~~~~a~~~-----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 147 QEGSPHSAAEC-----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HTT-HHHHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCCChhhHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 23322222222 223445566677777777777766553221 1111 122222344445666666
Q ss_pred HHHHHHHHHh--CCCCc--hhHHHHHHHHHHh--CCCHHHHHHHHhhcCCCChh
Q 037816 378 KQIHSLIIKS--DFTSN--PFVNNGLINMYSK--CGDLEDSIKVFSRMAPRNSV 425 (648)
Q Consensus 378 ~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~ 425 (648)
...++..... ++..+ ..+...|+.++-. ...++.+..-|+.+.+-|.-
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 6666665533 22222 2344455555543 34566667777766655543
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.30 E-value=0.067 Score=49.94 Aligned_cols=173 Identities=10% Similarity=0.050 Sum_probs=100.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--CC-hhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 037816 399 LINMYSKCGDLEDSIKVFSRMAP--RN-SVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH- 471 (648)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~--~~-~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 471 (648)
....+...|++++|.+.|+.+.. |+ ... .-.+..++.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33445567788888877777753 21 111 223456677788888888888888775311112233333333221
Q ss_pred -cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037816 472 -VG---------------L---VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532 (648)
Q Consensus 472 -~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 532 (648)
.+ + ...|...|+.+.+. |=...-..+|..-+..+....-.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 12344444444442 222223344443333331000011 113
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+..-|.+.|.+..|+.-++.+++.-|..+ .+...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45668899999999999999998887754 567788899999999999998877653
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.0042 Score=50.18 Aligned_cols=87 Identities=17% Similarity=0.045 Sum_probs=51.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCccHHHHHHHHH
Q 037816 501 VVDMVGRAGLLIEARSFIERM---PVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYS 572 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 572 (648)
+..++-..|+.++|+.+|++. +.... ...+-.+..++...|++++|+.++++.....|+ +......++-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555566666666666655 22221 233444556666677777777777777666665 4445555566666
Q ss_pred hcCChHHHHHHHHHH
Q 037816 573 CSGRWKERAKAIKRM 587 (648)
Q Consensus 573 ~~g~~~~A~~~~~~m 587 (648)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777665443
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.26 E-value=0.065 Score=54.62 Aligned_cols=282 Identities=12% Similarity=0.140 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816 85 VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164 (648)
Q Consensus 85 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~ 164 (648)
+.|....+..-+..|...|.+++|..+----. ...-|..|...-...=+++-|.+.|.+.+.. -|..++.
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------~~L~li~ 621 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL--------RYLELIS 621 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------HHHHHHH
Confidence 35555555555666777777777655421111 1222444544444444555555555444332 2222222
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH
Q 037816 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
-++.+.+.|-.|+... +...++-.|.+.+|.++|.+ .|.-..|+++
T Consensus 622 -------------EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEm 667 (1081)
T KOG1538|consen 622 -------------ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEM 667 (1081)
T ss_pred -------------HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHH
Confidence 2345566676676655 44556677888888777654 4555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 037816 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV 324 (648)
Q Consensus 245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 324 (648)
|.+|+-. -...-+...|+.++-..+.+.--+.. .++.--.+-..++..+|+.++|..+.
T Consensus 668 yTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~--------- 726 (1081)
T KOG1538|consen 668 YTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC--------- 726 (1081)
T ss_pred HHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh---------
Confidence 5555320 11222233333333333322211110 00000022334445556655555432
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
..+|-.+-+.++-+++- ..+..+...+..-+-+...+..|.++|..|-+. .++++...
T Consensus 727 ---------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv 784 (1081)
T KOG1538|consen 727 ---------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV 784 (1081)
T ss_pred ---------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence 22233333333333321 122233333333344445555555565554322 23555556
Q ss_pred hCCCHHHHHHHHhhcCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037816 405 KCGDLEDSIKVFSRMAP--RNSV-----------SWNSMIAAFARHGNGFKALELYEEMKLE 453 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 453 (648)
..+++++|..+-++.++ +|+. -|...-.+|.+.|+-.+|..+++++...
T Consensus 785 e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 66666666666666553 2211 1222334566778888888888877653
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.26 E-value=0.038 Score=46.51 Aligned_cols=95 Identities=5% Similarity=-0.033 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
+....-.+..-+...|++++|..+|+-+.... | +..-|..|.-+|-..|++++|+..|...... . +.++..+-.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHH
Confidence 33333344444555666666666666665532 3 3334444555555566666666666666542 1 2355556666
Q ss_pred HHHhhhcCCHHHHHHHHHhC
Q 037816 502 VDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~ 521 (648)
..++...|+.+.|.+.|+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666665544
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.24 E-value=0.0008 Score=48.80 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG-DSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 558 (648)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777888888888888888777 4445 4666778888888888 68889999988888877
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.22 E-value=0.0049 Score=61.43 Aligned_cols=116 Identities=9% Similarity=0.043 Sum_probs=72.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccCC------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 037816 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEEL------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV 364 (648)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 364 (648)
+......+++.+....+++.+..++.+.... -..+..++++.|.+.|..+.++.+++.=...|+=||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444555555555555555555555431 1234456777777777777777777777777777777777777
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816 365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406 (648)
Q Consensus 365 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (648)
|..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777666556666655555444443
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0042 Score=61.89 Aligned_cols=118 Identities=8% Similarity=-0.061 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C-----CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH
Q 037816 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R-----NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261 (648)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 261 (648)
+.+......+++.+....+++.+..++-+... | -..|.+++|+.|.+.|..++++++++.=..-|+-||..|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 44555666677777777777778777766642 2 23466799999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 037816 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC 305 (648)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (648)
.+|..+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777777666555555554
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.19 E-value=0.27 Score=48.36 Aligned_cols=248 Identities=13% Similarity=0.043 Sum_probs=138.9
Q ss_pred HHhcCCChhHHHHhhccCCCC---C------cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH--h
Q 037816 98 FYLKCDQMRNAVKLFDDMPMR---D------TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA--C 166 (648)
Q Consensus 98 ~~~~~g~~~~A~~~~~~~~~~---~------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~--~ 166 (648)
.+-+.+++.+|.++|.++-.. + ...-+.++++|... +.+.....+....+.. | .. .|..+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s-~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KS-AYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-Cc-hHHHHHHHHHH
Confidence 355678999999999888622 2 22345667777654 4444444444444432 4 23 56666665 4
Q ss_pred hccCChHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHhHhcCChhHHHHHhcccCC--------CCccc
Q 037816 167 DRSELSLVSKMIHCLVYLC--GYE------------EEVTVGNALITSYFKCGSSSSGRKVFGEMRV--------RNVIT 224 (648)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~ 224 (648)
-+.+....|.+.+...... +.. +|...-+..++.+...|++.+++.+++++.. -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5677788887777666554 222 2333346777888899999999999988862 26777
Q ss_pred HHHHHHHHHHC--------CCc-------hHHHHHHHHHHhC------CCCCChhhHHHHHHHhhcc--CChHHHHHHHH
Q 037816 225 WTAVISGLVQN--------QLY-------EEGLKLFVKMHLG------LINPNSLTYLSSVMACSGL--QALCEGRQIHG 281 (648)
Q Consensus 225 ~~~li~~~~~~--------g~~-------~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~ 281 (648)
||.++-.+.+. ... +-++-..++|... .+.|....+..++....-. ..+.--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88744433322 122 2233333333221 2334444444444433222 22233334444
Q ss_pred HHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhccC--------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037816 282 ILWKLALQSDLC-IESALMDMYSKCGSVEDAWQIFEFAEE--------LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA 352 (648)
Q Consensus 282 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 352 (648)
.-...-+.|+-. +...|...+.+ +.+++..+-+.+.. .=+.++..++....+.++...|-+.+.-+.-.
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 444444555533 33444444444 44444444333322 23456777888888888888888888776553
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.19 E-value=0.072 Score=52.12 Aligned_cols=161 Identities=22% Similarity=0.171 Sum_probs=97.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816 398 GLINMYSKCGDLEDSIKVFSRMAPR-------NSVSWNSMIAAFAR---HGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467 (648)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 467 (648)
.++-+|....+++...++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566666777777777666532 11222233445555 7788888888888665555677777777766
Q ss_pred HHh----c-----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH----HHHHHHH---HhC-------CCC
Q 037816 468 ACS----H-----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL----IEARSFI---ERM-------PVK 524 (648)
Q Consensus 468 ~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~~-------~~~ 524 (648)
.|- . ....++|...|.+.-+ +.|+...--.++..+...|.. .+..++- ... .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 1 2246778888887744 456544433333344444431 1222222 111 123
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.|-..+.+++.++.-.|++++|.+.++++.++.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4566667888889999999999999999999987753
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0035 Score=58.87 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=42.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCCh
Q 037816 506 GRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRW 577 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~ 577 (648)
.+.|++++|...|+.+ ...|+ +..+..+..+|...|+++.|...|+++++..|+++ .++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3344555555544444 22222 12344455555555666666666666655554432 3334445555556666
Q ss_pred HHHHHHHHHHHh
Q 037816 578 KERAKAIKRMKE 589 (648)
Q Consensus 578 ~~A~~~~~~m~~ 589 (648)
++|..+++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.38 Score=49.82 Aligned_cols=173 Identities=9% Similarity=-0.004 Sum_probs=91.8
Q ss_pred CCcHhHHHHHHHHhhccCChHHHHHHHHHHHH-hCCC--------CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcc
Q 037816 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYL-CGYE--------EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI 223 (648)
Q Consensus 153 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 223 (648)
|... .|..|.......-.++.|+..|-.... .|++ .+...-.+=+.+ --|++++|++++-++..+|.
T Consensus 690 PHpr-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 690 PHPR-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CchH-HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 6555 777776666555556666555433221 1111 111111111222 24788888888888776653
Q ss_pred cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHH
Q 037816 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN----SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299 (648)
Q Consensus 224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 299 (648)
.|..+.+.|+|-...++++.- |-..| ...++.+...++....++.|.+.+..-... ...+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 355666777777776666432 11111 235666666666666666666666543221 2345
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 037816 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 346 (648)
.++.+...+++-+.+-..+++ +......+...+...|.-++|.+.|
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 555555555555555555544 3333444555556666666555544
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0022 Score=61.29 Aligned_cols=130 Identities=7% Similarity=-0.030 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhH---HhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCC-CCH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMT---EVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVK-PDV 527 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 527 (648)
..|..|.+.|.-.|+++.|+...+.-. +.+|-.. ....+..+..++.-.|+++.|.+.|+.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356677777778899999987655422 2234333 4567788899999999999999998865 222 234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cC--CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFL----AQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.+.-+|.++|.-..++++|+.++.+-+. ++ -....++.+++.++...|..++|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566788888888899999998887653 22 23457899999999999999999988776554
No 195
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.0086 Score=52.61 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=43.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACS 538 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 538 (648)
..+...+...|++++|...|++.... ...+ ...++..+...|...|++++|+..+++. .+.|+ ..++..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33333344444555555555444432 1111 1224444445555555555555555444 22222 233333333333
Q ss_pred -------HcCChH-------HHHHHHHHHHhcCCCC
Q 037816 539 -------IHGDSE-------MGKYAAEKLFLAQPDS 560 (648)
Q Consensus 539 -------~~g~~~-------~A~~~~~~~~~~~p~~ 560 (648)
..|+++ +|..+++++.+..|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 555655 4445555556666654
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0005 Score=49.69 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=34.8
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 037816 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQ 531 (648)
Q Consensus 471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~ 531 (648)
..|++++|.++|+++.+. .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666777777766653 2335566666666666666666666666666 4445544333
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.06 E-value=0.00048 Score=41.33 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582 (648)
Q Consensus 550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 582 (648)
++++++.+|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.56 Score=49.19 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 473 (648)
.+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. .+.-|..++.+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3444445556677888888888888888888888888888888888877665554432 2455777788888888
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (648)
+.++|..++-+... .. -.+.+|.+.|++.+|.++--+
T Consensus 759 n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cHHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHHH
Confidence 88888887776622 11 456777888888777765433
No 199
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.12 Score=48.24 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=28.7
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCccc---H---HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816 300 DMYSKCGSVEDAWQIFEFAEELDGVS---M---TVILVGFAQNGFEEEAMQLFVKMVKAG 353 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~---~~li~~~~~~~~~~~a~~~~~~m~~~~ 353 (648)
..+...|++++|.+.|+.+....+.+ . -.++.++.+.+++++|...+++..+..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33445566666666666655421111 1 123445566666666666666666543
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.02 E-value=0.0031 Score=62.18 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...|+.+..+|...|++++|+..++++++++|++.. +|+.++.+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4666777777777777777777777777777777764 3777777777777777777777777764
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.01 E-value=0.18 Score=43.18 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=95.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
|++..-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++.+..--.-++.....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444456778888889999999999888764344577778888888888999999999999887641111156667778
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 502 VDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
.+.|...|+.++|+.-|+.. ..-|+...-......+.+.|+..+|..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88899999999998888877 555665554445555677787666665444443
No 202
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.01 E-value=0.36 Score=46.48 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hhHH
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVE-----PTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPR--AEHY 498 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~~ 498 (648)
..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|++..|.+.+++..... ++..+ ..+.
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 34566677788888888888877654221 1221 22233335566788888888888876431 22222 3345
Q ss_pred HHHHHHhhh--cCCHHHHHHHHHhC
Q 037816 499 ACVVDMVGR--AGLLIEARSFIERM 521 (648)
Q Consensus 499 ~~l~~~~~~--~g~~~~A~~~~~~~ 521 (648)
..|+.++-. ...+++|..-|+.+
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 566666654 34577777777777
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.026 Score=45.65 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=61.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhh
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVEPT--DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVG 506 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 506 (648)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566678888888888888888775544 23555666778888888888888888876421111 2233333445667
Q ss_pred hcCCHHHHHHHHHhC
Q 037816 507 RAGLLIEARSFIERM 521 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~ 521 (648)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 778888888766443
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.059 Score=52.03 Aligned_cols=162 Identities=17% Similarity=0.050 Sum_probs=102.1
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCh-hHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 037816 402 MYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAA--FARHGNGFKALELYEEMKLEGVEPTDVTFLSL------------- 465 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l------------- 465 (648)
++.-.|+.++|.+.-..+.+-|. ..+...+++ +-..++.+.|...|++.+..+ |+...-...
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 44556677777666555544332 233333333 334667778888888777644 655432221
Q ss_pred HHHHhccCcHHHHHHHHHHhHHh--cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHc
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEV--HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL---GACSIH 540 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~ 540 (648)
.+-..+.|++..|.+.|.+.+.. .+..|+...|........+.|+..+|+.-.+.. ...|+.....++ .++...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHH
Confidence 12345778999999999998642 123345667777888888999999999988887 233333333332 446677
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
++++.|++.++++.+.... ......+
T Consensus 335 e~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 8999999999999876654 3333333
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.015 Score=56.18 Aligned_cols=63 Identities=6% Similarity=0.047 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..++..|..+|.+.+++..|+...+++++.+|+|..+.+.-+.+|...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666777778888888888888888888888888888888888888888888888888876
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.066 Score=48.44 Aligned_cols=131 Identities=8% Similarity=0.026 Sum_probs=79.0
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--------PVKPDVLVWQALL 534 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 534 (648)
+.++..+.-.|.+.-....+.+.++. ..+.++.....|+..-...|+.+.|...|++. ++.-.........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666666666666653 33445666666666666666666666666643 1111222222222
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 594 (648)
..|.-++++..|...+.++.+.+|.++...+.-+-++.-.|+..+|++.++.|+..-..|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 335556677777777777777777777777776666677777777777777777654333
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.022 Score=53.64 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALL 534 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 534 (648)
.|...+....+.|++++|...|+.+.+.+.-.+ .+..+-.+...|...|++++|...|+.+ ...|+ ...+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776421111 1245666777777777777777777776 22232 44455556
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.++...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788899999999999888888764
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.77 E-value=0.0023 Score=41.30 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
.++..+..+|...|++++|++.++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778899999999999999999999999999988887764
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.76 E-value=0.0023 Score=47.73 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC-C---CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLA---QP-D---SPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+++.+...|...|++++|+..++++++. .+ + -..++..++.++...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778888888999999999999988753 22 2 246788899999999999999999988754
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.75 E-value=0.029 Score=47.85 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=72.1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
...++.+.+...+.++...+.-++ +... ..-.....+.++.. -......++..+...|+++.|+
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence 455677777777777765432111 1111 11122222233332 1334566777788999999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037816 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKET 596 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 596 (648)
..+++++..+|-+...|..++.+|...|+..+|.+.|+++.+ .|+.|++
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999999853 4776664
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.73 E-value=0.017 Score=50.96 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCcccHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC----------------ChhHHHH
Q 037816 321 LDGVSMTVILVGFAQ-----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----------------SLGLGKQ 379 (648)
Q Consensus 321 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 379 (648)
.+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.. +-+.|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555566665554 3666777778888999999999999999998875432 3567888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816 380 IHSLIIKSDFTSNPFVNNGLINMYSKCGD 408 (648)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 408 (648)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999888876654
No 212
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.73 E-value=0.011 Score=52.02 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=74.3
Q ss_pred HHhhccC--CCCCcccHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC-----------
Q 037816 109 VKLFDDM--PMRDTVSWNTMVSGFLR-----NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE----------- 170 (648)
Q Consensus 109 ~~~~~~~--~~~~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~----------- 170 (648)
...|+.. ...+..+|..++..|.+ .|..+=....+..|.+.|+.-|-. +|+.||..+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~-~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLE-VYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHH-HHHHHHHhCCCCCcccccHHHHHh
Confidence 3455555 35677888888888765 467777888889999999988888 9999999875432
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816 171 -----LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206 (648)
Q Consensus 171 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 206 (648)
+.+-+..++++|...|+-||.+++..|++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456678888888888888888888888888866554
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.061 Score=50.11 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCCC-HHHH
Q 037816 456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG---LLIEARSFIERM-PVKPD-VLVW 530 (648)
Q Consensus 456 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~ 530 (648)
+-|...|..|...|...|+++.|...|....+. -.+++..+..+..++.... .-.++.++|+++ ..+|+ +...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 447889999999999999999999999999873 4457777777777765443 467888899988 55664 5566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
..|...+...|++.+|...++.+++..|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677789999999999999999999998874
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.68 E-value=0.062 Score=54.76 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=54.1
Q ss_pred hhHhhHhHHhhccccCCCccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhh-----cCCCCCcCcCCCCChHH
Q 037816 16 FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-----FEPFDNQNVYNVPNATV 90 (648)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 90 (648)
.|.+=+..|..+|.++++.+..++-. ....+..+.......=+++-|+..|-..... +..+++|.+.|-.|+..
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgV-v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGV-TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred cccccchhhhhccchhhhhcccccce-ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34444556777788888877665544 3344555555555555666666655443321 11124455555556654
Q ss_pred HHHHHHHHHhcCCChhHHHHhhccCC
Q 037816 91 IWNSLLSFYLKCDQMRNAVKLFDDMP 116 (648)
Q Consensus 91 ~~~~li~~~~~~g~~~~A~~~~~~~~ 116 (648)
. +...++-.|.+.+|-++|.+-.
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHcC
Confidence 3 2344566677777777776544
No 215
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.67 E-value=0.2 Score=40.31 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=94.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 513 (648)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34468888888888888763 35666777776666677777778888887553322 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 514 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
....+-.++ .+.......+.+...+|.-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++-+++++..+.|+.
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555552 345556777888899999999999999988777778899999999999999999999999999999863
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.60 E-value=1.2 Score=46.47 Aligned_cols=29 Identities=7% Similarity=-0.079 Sum_probs=14.6
Q ss_pred CCChhHHHHHHHHhHhcCChhHHHHHhcc
Q 037816 188 EEEVTVGNALITSYFKCGSSSSGRKVFGE 216 (648)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (648)
.|-+..|..|.......-.++-|+..|-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 34555555555555444455555544433
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.0084 Score=43.92 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.8
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 565 (648)
..|.+.+++++|.++++++ ...| ++..|.....++...|++++|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4677788888888888887 4445 4555677777888888888888888888888887754443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.29 Score=44.49 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA----- 499 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 499 (648)
...+.++.++.-.|.+.-.+..+++.++...+-++.....|.+.-.+.|+.+.|...|+...+. .-..+....+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456677778888899999999999998765567788888999999999999999999977654 3333333333
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 500 CVVDMVGRAGLLIEARSFIERMPV--KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
.....|.-..++..|...+.++.. ..|+...|.-.-+..-.|+...|++.++.+.+..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 333456677889999999988822 2345555555555666789999999999999988874
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.42 E-value=0.15 Score=46.32 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVE-P-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (648)
....+...|++++|...|+++...-.. | -......++.++.+.|+++.|...++...+.+.-.|.. -+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHH
Confidence 334455566666666666666654211 1 12334455566666666666666666666543222211 11111111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-----------------HHHHHHH
Q 037816 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-----------------YILMANI 570 (648)
Q Consensus 508 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~ 570 (648)
........ ....+.+...+|...++.+++..|+++.+ -..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 01122234556677777777777776532 1246778
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 037816 571 YSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 571 ~~~~g~~~~A~~~~~~m~~~ 590 (648)
|.+.|.+..|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=1.6 Score=46.04 Aligned_cols=327 Identities=13% Similarity=0.113 Sum_probs=186.0
Q ss_pred HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCC---hHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 037816 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA---LCEGRQIHGILWKLALQSDLCIESALMDMY 302 (648)
Q Consensus 226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (648)
..+|+-+...+.+..|+++-+.+...-... ...|.....-..+..+ -+.+..+-+.+.. .. .+...|.....-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHH
Confidence 456777888888999998888875422222 4556555555554432 2222222222222 12 3344566677777
Q ss_pred HhcCCHHHHHHHHHhccCC--------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816 303 SKCGSVEDAWQIFEFAEEL--------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374 (648)
Q Consensus 303 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 374 (648)
..+|+++-|..+++.=... +...+...+.-..+.|+.+-...++-.+... .+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 7889999998888654331 2333455566666777777776666666543 1112222221 133
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc------CCCChhHHHHHHHHHHHcCC---------
Q 037816 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM------APRNSVSWNSMIAAFARHGN--------- 439 (648)
Q Consensus 375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~--------- 439 (648)
..|..+|.+..+..-.. .+-+.|-...+...+-.+.-+- ..+-.........++.+...
T Consensus 589 p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRA------TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhhHHHHHHHHhhchh------hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 34455555444321111 1111222222222211111111 01111122223333433322
Q ss_pred -hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816 440 -GFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517 (648)
Q Consensus 440 -~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (648)
..+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -|+...|..=+.+++..++|++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122222223322 2333444456666777888899999998887773 37999999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 518 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
-+..+ .+.-|.-...+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.+.--+
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88873 144566788899999999999988877522 22677889999999999876444
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.35 E-value=1.2 Score=43.92 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC---cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD---TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
|.|+..|-.||.-|...|..++..++++.|..|- ...|..-|++-....++.....+|.+.....+..+--.+|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y 118 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY 118 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence 7789999999999999999999999999999774 4568888888888889999999999998876655544455544
Q ss_pred HHH
Q 037816 163 LSA 165 (648)
Q Consensus 163 l~~ 165 (648)
++-
T Consensus 119 IRr 121 (660)
T COG5107 119 IRR 121 (660)
T ss_pred HHh
Confidence 444
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.067 Score=51.84 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=79.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
..++..|.-+|.+.+++.+|++..++. .. ++|.-..-.-..+|...|+++.|+..|+++++..|.|..+-..++.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345677888899999999999998887 33 4456666667789999999999999999999999999999999988877
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 037816 573 CSGRWKER-AKAIKRMKEM 590 (648)
Q Consensus 573 ~~g~~~~A-~~~~~~m~~~ 590 (648)
+...+.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77666655 7888888654
No 223
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.035 Score=53.39 Aligned_cols=129 Identities=12% Similarity=0.041 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh----cCCCCChhH
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMK----LEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEV----HRISPRAEH 497 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 497 (648)
|..|...|.-.|+++.|+..-+.=. +.|-+. ....+..+.+++.-.|+++.|.+.|+..... ..-......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3334444444556666654433211 122111 1234555666666666666666666654321 011123334
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM--------PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.-+|..+|.-...+++|+.++.+- ...-....+-+|..+|...|..++|..+.+..++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445666666666666666665543 1122355666677777777777777776666543
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.26 E-value=0.054 Score=44.28 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 454 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
...|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|++=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356778888888888888888888888888888877777777777777654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.23 E-value=0.0076 Score=44.87 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-------P-VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
+++.+...|...|++++|+..|++. + ..|+ ..++..+..++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555566655555555544 1 1122 45566777777778888888888777764
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.17 E-value=0.28 Score=44.46 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=90.0
Q ss_pred HHHHhCCCHHHHHHHHhhcCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc-
Q 037816 401 NMYSKCGDLEDSIKVFSRMAP--R----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLLHACSH- 471 (648)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~- 471 (648)
..+...|++.+|...|+.+.. | -....-.++.++.+.|+++.|...++++.+.- |+. ..+...+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHH
Confidence 345566777777777776652 1 12344456677778888888888888877643 332 122222222211
Q ss_pred ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 037816 472 ------------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539 (648)
Q Consensus 472 ------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 539 (648)
.+...+|...|+.+.. .|=......+|...+..+.... ...--.+...|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1223344444554444 3444444455554444431000 0111224566888
Q ss_pred cCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHH
Q 037816 540 HGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERA 581 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 581 (648)
.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999888864 35667888888888888554
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.14 Score=43.62 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE----VHRISPRAEH 497 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~ 497 (648)
....++..+...|++++|..+++.+.... +-|...|..+|.++...|+...|.+.|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445566667777788877777777754 33667777777777777877777777776643 2366665554
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.94 E-value=0.7 Score=45.46 Aligned_cols=163 Identities=11% Similarity=0.079 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEG---VEPTDVTFLSLLHACSH---VGLVNKGMEFLKSMTEVHRISPRAEHYAC 500 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 500 (648)
.-.++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|++++..+... .-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3356667899999999999999998641 11122223344556666 89999999999996654 66788889988
Q ss_pred HHHHhhh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC-hH---HHHHHH---HHHH-hc----CC
Q 037816 501 VVDMVGR---------AGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGD-SE---MGKYAA---EKLF-LA----QP 558 (648)
Q Consensus 501 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~----~p 558 (648)
+...|-. ...+++|...|.+. .+.||..+=-.++..+.-.|. .+ +..++- ..+. +. .-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877632 23478899999888 666764442222222323332 22 222222 1111 11 12
Q ss_pred CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 559 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34566778888999999999999999999875
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.046 Score=54.23 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666666777777777776664 555653 24666777777777777777777777665
No 230
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.86 E-value=2.1 Score=42.32 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=93.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLV-WQALLGAC 537 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~ 537 (648)
.|...+++..+...++.|..+|-+..+. + +.++..++++++..++ .|+...|-++|+-. ..-||... .+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4556677777777888899999999886 5 6778888888887665 57788888888865 33344443 34556667
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC--CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
...++-+.|..+|+..++.-..+ ..+|..++.--..-|+...+..+=++|..
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 78888899999999776543333 56888888877788888877777666654
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.077 Score=48.81 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=32.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
|..++...|+++.|...|..+.+..|.. +..+.-++.+..+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555556666666666666655544433 33455555556666666666666666554
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.80 E-value=1.5 Score=40.31 Aligned_cols=195 Identities=21% Similarity=0.182 Sum_probs=105.3
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMA-----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH- 467 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~- 467 (648)
..+......+...+.+..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 444445555555555555555554432 1233344444555555566666666666666533222 111111222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCC
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRI--SPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD--VLVWQALLGACSIHGD 542 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 542 (648)
.+...|+++.|...+.+.... .. ......+......+...++.+++...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 556666666666666666331 11 112333333333455666677777666665 33333 4556666666666677
Q ss_pred hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++.|...+..+....|.....+......+...|.++++...+++....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777766664455555555555556677777666666553
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.52 Score=43.97 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=81.4
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChH
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA---LLGACSIHGDSE 544 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 544 (648)
.....|++.+|...|+..... .+-+...--.++.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 356778888888888888763 333566777788888888888888888888844433333322 222333333333
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+.. -++.-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 322 234445678888888888888888899999888887777654
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=95.53 E-value=1.2 Score=44.76 Aligned_cols=144 Identities=11% Similarity=0.153 Sum_probs=91.9
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816 439 NGFKALELYEEMKL-EGVEPT-DVTFLSLLHACSH---------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507 (648)
Q Consensus 439 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (648)
..+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.+.-++..+. -+-|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35677788888872 224564 3444444433321 23445666666666652 23377777777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH--HHHHHHhcCChHHHHHH
Q 037816 508 AGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL--MANIYSCSGRWKERAKA 583 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~ 583 (648)
.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++++++|....+-.. .++.|+. ...++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 88888888888888 56666 4456666666777888999999999988888876543332 2233443 456667766
Q ss_pred HH
Q 037816 584 IK 585 (648)
Q Consensus 584 ~~ 585 (648)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 54
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.45 E-value=0.16 Score=40.60 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=61.4
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----ccHHHHHHHHHhcCCh
Q 037816 504 MVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP----APYILMANIYSCSGRW 577 (648)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 577 (648)
+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|+.-+++++++..+.. ..|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777765 3333 456677777777778888888888888777654332 2455666677778888
Q ss_pred HHHHHHHHHHHhCC
Q 037816 578 KERAKAIKRMKEMG 591 (648)
Q Consensus 578 ~~A~~~~~~m~~~~ 591 (648)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88888888777766
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.43 E-value=0.28 Score=48.93 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhh---------cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC
Q 037816 474 LVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGR---------AGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHG 541 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g 541 (648)
..+.|..+|.+........|+ ...|..+..++.. .....+|.++.++. .+. -|+.....+..+..-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456788888888733345563 4455554444322 23355666666666 444 46777777878788888
Q ss_pred ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999997664
No 237
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.36 E-value=0.59 Score=38.74 Aligned_cols=19 Identities=21% Similarity=0.168 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 037816 543 SEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~~~ 561 (648)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4456666666666666653
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.32 E-value=0.46 Score=39.34 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=54.8
Q ss_pred HHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhc
Q 037816 503 DMVGRAGLLIEARSFIERM----PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCS 574 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 574 (648)
....+.|++++|.+.|+.+ +..| ....-..|+.+|.+.++++.|+..+++-++++|.++. ++...+-++...
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3445667777777777776 2222 2344555777888888888888888888888887653 233333333333
Q ss_pred CC---------------hHHHHHHHHHHHhC
Q 037816 575 GR---------------WKERAKAIKRMKEM 590 (648)
Q Consensus 575 g~---------------~~~A~~~~~~m~~~ 590 (648)
.. ..+|...|+++++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 33 56677777776653
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.32 E-value=0.21 Score=40.93 Aligned_cols=77 Identities=17% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC---
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMT--------------EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--- 521 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 521 (648)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3445555555555555555555554431 01123344444445555555455555554444433
Q ss_pred -CCCCCHHHHHHHHH
Q 037816 522 -PVKPDVLVWQALLG 535 (648)
Q Consensus 522 -~~~p~~~~~~~l~~ 535 (648)
+++-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33333444444443
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.26 E-value=1.1 Score=44.95 Aligned_cols=101 Identities=10% Similarity=0.168 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-V-KPD--VLVWQALLGA 536 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~ 536 (648)
+-..+..++-+.|+.++|.+.++++.+.+....+..+...|+..+...+.+.++..++.+.. + -|. ..+|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33456667788999999999999998753322355677889999999999999999998882 2 233 3446555433
Q ss_pred HHHcCC---------------hHHHHHHHHHHHhcCCCCC
Q 037816 537 CSIHGD---------------SEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 537 ~~~~g~---------------~~~A~~~~~~~~~~~p~~~ 561 (648)
+...++ ...|.+.+.++.+.+|.-+
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 333332 2345677888888877643
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.95 E-value=1.1 Score=46.41 Aligned_cols=115 Identities=20% Similarity=0.125 Sum_probs=70.7
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHhhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIERM-PVK-----PDVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~ 544 (648)
..+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++. ... .....+--+...+.-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34567777777777663 34443333 3345566677777777777765 111 12333444556677778888
Q ss_pred HHHHHHHHHHhcCCCCCccHHHH-HHHHHhcCCh-------HHHHHHHHHHHh
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILM-ANIYSCSGRW-------KERAKAIKRMKE 589 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~m~~ 589 (648)
+|...+..+.+.+.-+..+|..+ +-++...|+. ++|.+++.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888877665555555433 3344466777 777777777644
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.89 E-value=3.1 Score=38.24 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHH-H
Q 037816 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN-SVSWNSMIA-A 433 (648)
Q Consensus 359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~-~ 433 (648)
..+......+...+....+...+...... ........+......+...+.+..+...+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444444455555555555555444432 2233444555555566666667777777766553 21 122222333 6
Q ss_pred HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCC
Q 037816 434 FARHGNGFKALELYEEMKLEGV--EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGL 510 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 510 (648)
+...|+++.|...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 7788999999999988865221 112334444444467788999999999999773 334 47778888888999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 511 LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998887 44554 445555555556777899999999999988887
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=1.4 Score=44.99 Aligned_cols=155 Identities=9% Similarity=0.055 Sum_probs=94.7
Q ss_pred HHHhcCCchHHHHHHH--HHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816 129 GFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206 (648)
Q Consensus 129 ~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 206 (648)
...-.|+++++.++.+ ++.. .+ | .. ....+++.+.+.|..+.|..+. .|+. .-.....+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~-~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KD-QGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HH-HHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hh-HHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence 4455677777666554 1111 11 2 22 4667777777777777777663 2322 23455678899
Q ss_pred hhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816 207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286 (648)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (648)
++.|.++.++.. +...|..|.+...+.|+++-|.+.|++..+ |..++-.+...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999999888776 445899999999999999999999988764 566666777778777777777666655
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037816 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFE 316 (648)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 316 (648)
|- ++....++.-.|++++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 52 3444445555666666655544
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.79 E-value=4.3 Score=39.49 Aligned_cols=58 Identities=9% Similarity=-0.053 Sum_probs=25.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hCCCHHHHHHHHhhc
Q 037816 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS-KCGDLEDSIKVFSRM 419 (648)
Q Consensus 360 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~ 419 (648)
....+..+....|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+.+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 333444444444554444433333322 1344444444444332 235555555555443
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=3.9 Score=43.86 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHH----HHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHh
Q 037816 91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV----SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166 (648)
Q Consensus 91 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~ 166 (648)
....-+..+.+..-++-|+.+-+.-..+ ..+-..+. .-+.+.|++++|...|-+-+.. +.| ..+++-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~------s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP------SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh------HHHHHHh
Confidence 3344567777778888888877665532 22222222 3345678888888887665432 111 2244444
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcc-cHHHHHHHHHHCCCchHHHHHH
Q 037816 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI-TWTAVISGLVQNQLYEEGLKLF 245 (648)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 245 (648)
........-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|.-+-
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 5555555666677777777754 3344467888888888888887777766522111 1334445555555555544443
Q ss_pred H
Q 037816 246 V 246 (648)
Q Consensus 246 ~ 246 (648)
.
T Consensus 487 ~ 487 (933)
T KOG2114|consen 487 T 487 (933)
T ss_pred H
Confidence 3
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.70 E-value=0.097 Score=41.83 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=52.8
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
-+.+..|+.+.|++.|.+++.+-|..+++|+.-+.++.-+|+.++|++-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999998875
No 247
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.66 E-value=8 Score=41.94 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC
Q 037816 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372 (648)
Q Consensus 298 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 372 (648)
-+..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+-..| ...+..+..++..+.+.|
T Consensus 105 ~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 334445566666666533222 2233334455566666777666666666554444 223344444444444333
No 248
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.12 Score=44.84 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=33.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++.+.+.++.|+.-..++++++|....+...-+.+|.+..++++|++-|+++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34555566666666666666666655555555566666666666666666666553
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.60 E-value=0.11 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
.|..+..++...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777754
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=3.2 Score=38.96 Aligned_cols=170 Identities=12% Similarity=0.081 Sum_probs=104.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816 411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490 (648)
Q Consensus 411 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 490 (648)
...+++++...+....--.-.......|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444454444322222222334566788889999888888754 223455667788889999999999998887432 1
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccHHHH
Q 037816 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILM 567 (648)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 567 (648)
-.........-+..+.+.....+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+..+-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222233444555554444444445553345 56666677778888999999998887777654 4566777888
Q ss_pred HHHHHhcCChHHHHH
Q 037816 568 ANIYSCSGRWKERAK 582 (648)
Q Consensus 568 ~~~~~~~g~~~~A~~ 582 (648)
+..+.-.|.-+.+.-
T Consensus 279 le~f~~~g~~Dp~~~ 293 (304)
T COG3118 279 LELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHhcCCCCHHHH
Confidence 888887775554433
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.32 Score=45.78 Aligned_cols=159 Identities=12% Similarity=0.040 Sum_probs=114.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHhhhcCCH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA----CVVDMVGRAGLL 511 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 511 (648)
-.|+..+|...|+++.+. .+-|...+..-=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478889999999999875 355777777778899999999999999999876 3456554444 344456689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHHHHHHHH
Q 037816 512 IEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 512 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
++|++.-++. .+.| |.-...++...+.-.|+..++.++..+-...-... ..-|-..+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888 5444 55556666667778899999999887754322211 1234556666778899999999998
Q ss_pred HHHhCCCCCCCc
Q 037816 586 RMKEMGVDKETG 597 (648)
Q Consensus 586 ~m~~~~~~~~~~ 597 (648)
+=.-.....+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 854444444443
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=8.2 Score=41.60 Aligned_cols=176 Identities=9% Similarity=-0.045 Sum_probs=109.8
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH----HhhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS----ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL 197 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (648)
....-+..+++...+..|+.+-+. .+ .+.. +...+.+ -+.+.|++++|...+-+-+.. +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QH--LDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 345667777888888888887654 22 2222 3333433 356789999998887665532 122 224
Q ss_pred HHHhHhcCChhHHHHHhcccCCC---CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChH
Q 037816 198 ITSYFKCGSSSSGRKVFGEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 274 (648)
|.-|....++..-..+++.+.+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+-.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 55556666666666666666543 55567889999999999998888776654 2321 112445566666677777
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037816 275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320 (648)
Q Consensus 275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 320 (648)
+|..+-..... .. ..+--.+-..+++++|.+.+..++-
T Consensus 481 ~a~~LA~k~~~-----he---~vl~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 481 EAELLATKFKK-----HE---WVLDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHhcc-----CH---HHHHHHHHHhcCHHHHHHHHhcCCH
Confidence 76655444332 12 2233345566889999999888764
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.42 Score=44.11 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=28.5
Q ss_pred HHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 501 VVDMVGRAGLLIEARSFIERM----PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
|.+++...|++++|..+|..+ +..| -+..+--|..+..+.|+.++|...|+++.+.-|...
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 444444444444444444443 1111 133344444455555555555555555555555543
No 254
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.47 E-value=0.088 Score=31.41 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
.+|..+..+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.45 E-value=2.6 Score=35.44 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 507 (648)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++. ..+.......++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 445666666667777777777777665 345566677777776543 2333333331 1223333446666677
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 508 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
.+.++++.-++.+++.. ...+..+... ++++.|++++++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77777777777776422 1222333333 677777776665 234456666555443
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.44 E-value=0.38 Score=44.21 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=76.9
Q ss_pred HHHHHHhcc--CCCcccHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC-----------
Q 037816 311 AWQIFEFAE--ELDGVSMTVILVGFAQN-----GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----------- 372 (648)
Q Consensus 311 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 372 (648)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46677777777776554 556667777889999999999999999998876543
Q ss_pred -----ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816 373 -----SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409 (648)
Q Consensus 373 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (648)
+-+-+..++++|..+|+.||..+-..|++++.+.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3456788999999999999999999999999887753
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=94.36 E-value=1.2 Score=37.99 Aligned_cols=84 Identities=10% Similarity=-0.045 Sum_probs=42.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
...|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|...... . .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34556666666665555433 112333334444445555666666666555432 1 12344444455555566666666
Q ss_pred HHHHHhC
Q 037816 515 RSFIERM 521 (648)
Q Consensus 515 ~~~~~~~ 521 (648)
...|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 6655554
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.34 E-value=9.1 Score=43.05 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=24.7
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
+.+|...|++.+|+.+..++.. +-.--..+-..|+..+...+++-+|.++..+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4445555555555555554422 11111112234455555555555555555554
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.23 E-value=2.8 Score=35.22 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 037816 123 WNTMVSGFLRNGEFDMGFGFFKRSLELG 150 (648)
Q Consensus 123 y~~li~~~~~~g~~~~A~~~~~~m~~~~ 150 (648)
...++..+...+.+.....+++.+...+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~ 37 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN 37 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence 3445555555555555555555555443
No 260
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.79 E-value=8 Score=38.61 Aligned_cols=149 Identities=12% Similarity=-0.001 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP---TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEH 497 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 497 (648)
...+|..+...+.+.|.++.|...+.++...+..+ .+.....-.+.+-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777888888888888888888877643211 2333444456666778888888888877762 12211 111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 498 YACVVDMVGRAGLLIEARSF-IERMPVKPDVLVWQALLGACSIH------GDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+.+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000012233333333333 788889999999999999888888888776
Q ss_pred HHhc
Q 037816 571 YSCS 574 (648)
Q Consensus 571 ~~~~ 574 (648)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.76 E-value=6.7 Score=37.62 Aligned_cols=17 Identities=6% Similarity=-0.310 Sum_probs=11.1
Q ss_pred HHHcCChHHHHHHHHHH
Q 037816 537 CSIHGDSEMGKYAAEKL 553 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~ 553 (648)
+.+.++++.|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45667777777766644
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.67 E-value=1.8 Score=44.29 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=78.7
Q ss_pred HHhCCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816 403 YSKCGDLEDSIKVFS--RMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 479 (648)
..-.++++++.++.. ++. .-+....+.++.-+.+.|-.+.|+.+..+-. .-.....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 334566666544443 111 1123345666666666677776666543321 1123344566666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
++.++. ++...|..|.+...+.|+++-|++.|.+.+ -+..|+-.|.-.|+.+.-.++.+.+...+-
T Consensus 339 ~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 339 EIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 654433 355677777777777777777777777763 134455556666776655555555443322
Q ss_pred CCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 560 SPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 560 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
++....++.-.|+.++..+++.+
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444445555777777766654
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.65 E-value=10 Score=39.36 Aligned_cols=180 Identities=15% Similarity=0.035 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037816 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367 (648)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 367 (648)
+..+|..-+..-.+.|+.+.+.-+|+...-| =...|--.+.-....|+.+-|-.++..-.+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777777777888888888777776553 1223333444444457777777666655554333333222222222
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH---HHHhhcCC--CChhHHHHHHHHH-----HHc
Q 037816 368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI---KVFSRMAP--RNSVSWNSMIAAF-----ARH 437 (648)
Q Consensus 368 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~~~~-----~~~ 437 (648)
.-..|+.+.|..+++.+...- +.-..+-..-+....+.|..+.+. .++....+ .+....+.+.--+ .-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 335567788888887777654 222233333445556666666666 33333321 1222222222222 224
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472 (648)
Q Consensus 438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 472 (648)
++.+.|..++.++.+. ++++...|..++.-+...
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 5666666666666654 244555555555544433
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.45 E-value=6.3 Score=36.33 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=43.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+.+-|.+.|.+..|..-++.+++.-|... ..+..+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45668899999999999999998766654 455667778999999999988765553
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.41 E-value=0.15 Score=30.97 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=20.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 563 PYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+|..++.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.39 E-value=0.4 Score=44.97 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKET 596 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 596 (648)
.++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 34556667777788888888888888888888888888888888888888888888888765 4555543
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.35 E-value=0.65 Score=42.73 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=79.7
Q ss_pred HHHhhccCC--CCCcccHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC----------
Q 037816 108 AVKLFDDMP--MRDTVSWNTMVSGFLRN-----GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE---------- 170 (648)
Q Consensus 108 A~~~~~~~~--~~~~~~y~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~---------- 170 (648)
..+.|.... +.|..+|-..+..+... +..+-....++.|.+.|+.-|-. +|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~-vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLD-VYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHH-HHHHHHHhCcccccccHHHHHHH
Confidence 344565555 55777888888777553 56677777788999999988888 9999999875543
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh-hHHHHHhcccC
Q 037816 171 ------LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SSGRKVFGEMR 218 (648)
Q Consensus 171 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 218 (648)
.-+-+..++++|...|+.||.++-..|++++.+.+-. .+..++.-.|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3345677888888889999988888888888877653 33444444443
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.22 E-value=5.6 Score=38.34 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=64.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHH-
Q 037816 398 GLINMYSKCGDLEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKL----EGVEPTDVTFL- 463 (648)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~- 463 (648)
++..++...+.++++++.|+...+ + ....+..|-..|.+..++++|.-+..+..+ .++.--..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 345555555666666666655431 1 233566666666777777776666555443 12111111222
Q ss_pred ----HHHHHHhccCcHHHHHHHHHHhHHh---cCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 464 ----SLLHACSHVGLVNKGMEFLKSMTEV---HRISP-RAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 464 ----~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
.+.-++...|....|.+..++..+. .|-.+ -......+.+.|-..|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2233455566666666666665442 12222 2334455666777777777766666543
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=6.8 Score=35.65 Aligned_cols=142 Identities=11% Similarity=0.023 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----CCChhHHHHH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI----SPRAEHYACV 501 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l 501 (648)
.|+-....|...|.++.|-..+++.-+ .....+++.|+++|++....... .--...+..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 344455566666666665555554432 11223444444444444321000 1122334445
Q ss_pred HHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCCccHHHHHH
Q 037816 502 VDMVGRAGLLIEARSFIERM-------PVKPDV-LVWQALLGACSIHGDSEMGKYAAEKLFL----AQPDSPAPYILMAN 569 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~ 569 (648)
...|++..++++|-..+.+- .-.|+. ..+.+.|-.+.-..|+..|...++.-.. ..|.+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 56677777777776655443 112222 2344555556666788888888877543 34666677778877
Q ss_pred HHHhcCChHHHHHHH
Q 037816 570 IYSCSGRWKERAKAI 584 (648)
Q Consensus 570 ~~~~~g~~~~A~~~~ 584 (648)
+| ..|+.+++..++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 76 557777766543
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.01 E-value=7.4 Score=35.89 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=89.5
Q ss_pred HhCCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------
Q 037816 404 SKCGDLEDSIKVFSRMAPR------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH------ 471 (648)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------ 471 (648)
.+.|++++|.+.|+.+... ...+.-.++.++-+.++++.|+..+++....-..-....|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4567777777777776532 2233444556666777788888777777764311112233333333321
Q ss_pred -cCcH---HHHHHHHHHhHHhcCC---CCChhH------------HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----H
Q 037816 472 -VGLV---NKGMEFLKSMTEVHRI---SPRAEH------------YACVVDMVGRAGLLIEARSFIERM-PVKPD----V 527 (648)
Q Consensus 472 -~g~~---~~A~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~ 527 (648)
..+. ..|..-|+++.+++-- .||... =..+.+-|.+.|.+..|..-+++| ..-|+ .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 1222 3344445555543211 111111 123456788999999998888888 21222 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
..+-.+..+|...|-.++|...-+-+....|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4455666789999999998887666555556554
No 271
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.97 E-value=6.4 Score=35.09 Aligned_cols=160 Identities=14% Similarity=0.045 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 502 (648)
-+..||-|.--+...|+++.|.+.|+...+.+..-+-...|. .-++.-.|++..|.+-+...-+...-.|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 346777777777788888888888888877541112222222 2234556788888777666655323333333333222
Q ss_pred HHhhhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCC-------CccHHHHHHHHHh
Q 037816 503 DMVGRAGLLIEARS-FIERMPVKPDVLVWQALLGAC-SIHGDSEMGKYAAEKLFLAQPDS-------PAPYILMANIYSC 573 (648)
Q Consensus 503 ~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 573 (648)
. ..-++.+|.. +.++. ...|..-|...+-.+ ..+=..+ .+++++.+...++ ..+|..++.-+..
T Consensus 177 E---~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred H---hhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 2 2334555554 33444 123334444433332 2221222 2333333322222 3578888999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 037816 574 SGRWKERAKAIKRMKEM 590 (648)
Q Consensus 574 ~g~~~~A~~~~~~m~~~ 590 (648)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999999877553
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.94 E-value=7.9 Score=40.28 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=83.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHH
Q 037816 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP------NMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVN 396 (648)
Q Consensus 327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 396 (648)
..+++...-.|+-+.+++.+.+..+.+-.-.+ -+|..++..++. ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 33444555556666666666655442211111 123333333332 34566677777776654 2444333
Q ss_pred H-HHHHHHHhCCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 397 N-GLINMYSKCGDLEDSIKVFSRMAPR-------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 397 ~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
. .-.+.+...|++++|.+.|+..... ....+--+.-.+.-.++|++|...|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3 3345556677788888877764421 12233334455666777788877777777643 3344444444433
Q ss_pred H-hccCcH-------HHHHHHHHHhH
Q 037816 469 C-SHVGLV-------NKGMEFLKSMT 486 (648)
Q Consensus 469 ~-~~~g~~-------~~A~~~~~~~~ 486 (648)
| ...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 445555 66666666553
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.75 E-value=0.29 Score=31.34 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=28.1
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHH
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI 161 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 161 (648)
++..+...|.+.|++++|.++|++..+.. |++...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHH
Confidence 46677788888888888888888888765 766644433
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.55 E-value=0.81 Score=30.61 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 037816 563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 639 (648)
....++-++.+.|++++|.+..+.+++ .+|...+....-..+.++|.+.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 356778889999999999999999987 346777777777778888888774
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.54 E-value=4.9 Score=32.66 Aligned_cols=137 Identities=10% Similarity=0.118 Sum_probs=80.3
Q ss_pred HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHhcCCH
Q 037816 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE---SALMDMYSKCGSV 308 (648)
Q Consensus 232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~ 308 (648)
+.-.|..++..++..+.... .+..-|++++.-....-+-+ .+++.+.+-|--.|.... ..++.+|.+.+..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~---yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCD---YVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HH---HHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchh---HHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Confidence 44567888888888877652 45556666666554443333 344444444544444332 2344555554432
Q ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816 309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388 (648)
Q Consensus 309 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 388 (648)
. ...+..+..+..+|+-+.-.++++.+... -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 86 s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 S--------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred H--------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 2 23344567788888888888888888753 36788888888899999999999998888888877
Q ss_pred C
Q 037816 389 F 389 (648)
Q Consensus 389 ~ 389 (648)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.39 E-value=3.9 Score=39.34 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=26.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHH
Q 037816 333 FAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQI 380 (648)
Q Consensus 333 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 380 (648)
+..+.+.++|+..+.+-...- ...-..+|..+..+.+..|.++++..+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 445667777777776665431 111234555556666666666555443
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.33 E-value=3.6 Score=41.58 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=82.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (648)
+..+...-++.-++..+ +.||..+.-.++ +--......++.+++++..+. +- ..+..-- .....|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s~-~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKSQ-FLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchhh-hhhcccc---hh
Confidence 44555555666666665 446654433332 122344567788888877663 10 0000000 0001111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 516 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
+.+.+-...|-..+-..+..++.+.|+.++|++.++.+.+..|. +..+...++.++...+++.++..++.+--+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112233444455667777888888888888888877665 4567788888888888888888888886544443
Q ss_pred CCCce
Q 037816 594 KETGI 598 (648)
Q Consensus 594 ~~~~~ 598 (648)
.+..+
T Consensus 328 kSAti 332 (539)
T PF04184_consen 328 KSATI 332 (539)
T ss_pred chHHH
Confidence 34333
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.28 E-value=0.27 Score=29.81 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
+|..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888889999999999888553
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.23 E-value=0.26 Score=46.44 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=77.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPD---VLVWQALLGACSIH 540 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~ 540 (648)
-.+-|.++|.+++|+..|..... +.| |+.++..-..+|.+..++..|+.-.... +..| ...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 35678899999999999998865 455 8888988899999999999888777665 1112 22344444444556
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHH
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 581 (648)
|...+|.+-++.++++.|.+...- ..+.+.....|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk----K~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK----KSLARINSLRERK 215 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH----HHHHHhcchHhhh
Confidence 788999999999999999965433 3333434444443
No 280
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=6.7 Score=35.43 Aligned_cols=76 Identities=9% Similarity=-0.029 Sum_probs=40.1
Q ss_pred HHHHhhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 501 VVDMVGRA-GLLIEARSFIERM-----PVKPDVLVWQALLG---ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 501 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...|-.. .++++|+..|+.. +...+...-..++. .-...+++.+|+.+|+++....-+++-.-..+-.-+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444433 4566666666655 22222222233333 235668888888888888776666544444433334
Q ss_pred HhcCC
Q 037816 572 SCSGR 576 (648)
Q Consensus 572 ~~~g~ 576 (648)
.+.|-
T Consensus 199 lkAgL 203 (288)
T KOG1586|consen 199 LKAGL 203 (288)
T ss_pred HHHHH
Confidence 44443
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.09 E-value=17 Score=37.83 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
+..+|...+.--.+.|+.+.+.-.|++..-| -...|--.+.-....|+.+-|..++....+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456666666677778888888877776543 2233444444444458888777777666654332222221111122
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEAR---SFIERM-PVKPDVLVWQALLGA-----CS 538 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~-----~~ 538 (648)
+-..|+++.|..+++.+.+. . |+ ...-..-+....+.|..+.+. +++... ..+-+..+...+.-- +.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 35567899999999999874 3 43 333333455566777777777 444444 222233333333222 34
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 575 (648)
-.++.+.|..++.++.+..|++...|..++....-.+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 4688999999999999999999888888888777665
No 282
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=4.9 Score=38.28 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=87.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCCHH
Q 037816 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS---DFTSNPFVNNGLINMYSKCGDLE 410 (648)
Q Consensus 334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 410 (648)
...|+..+|...++++.+. .+.|...+...=.+|.-.|+...-...++++... ++|-..++...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567777777777777765 4666666666667777777777666666666532 33333344444555556677777
Q ss_pred HHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816 411 DSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLE---GVEPTDVTFLSLLHACSHVGLVNKGMEFLKS 484 (648)
Q Consensus 411 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 484 (648)
+|++.-++..+- |.-.-.+....+-..|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 777777666543 3334445555566667777776665543321 1000111222223334555677777777765
Q ss_pred hHH
Q 037816 485 MTE 487 (648)
Q Consensus 485 ~~~ 487 (648)
-.-
T Consensus 273 ei~ 275 (491)
T KOG2610|consen 273 EIW 275 (491)
T ss_pred HHH
Confidence 443
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.88 E-value=6.8 Score=33.80 Aligned_cols=134 Identities=7% Similarity=-0.016 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC--ChhHHHHHhccc
Q 037816 140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG--SSSSGRKVFGEM 217 (648)
Q Consensus 140 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 217 (648)
.++++.+.+.++.|+.. .+..++..+.+.|....... ++..++-+|.......+-.+.... -..-|++.+.++
T Consensus 14 lEYirSl~~~~i~~~~~-L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHE-LYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 45556666677777776 77777777777776544333 334444455444333332222211 133444444444
Q ss_pred CCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286 (648)
Q Consensus 218 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 286 (648)
. ..+..+++.+...|++-+|+++.+.... .+......++.+....+|...-..+++...+.
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 3466677788888888888888877532 22223345566666666666555555555543
No 284
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.83 E-value=22 Score=38.65 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=96.3
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCC-CC--CcccHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCCc----Hh
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MR--DTVSWNTMVSGFL-RNGEFDMGFGFFKRSLELGFYQLD----QA 157 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--~~~~y~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~----~~ 157 (648)
+.+...|..||..-.++ ...+++... .| ...++-.+...|. ...+++.|...+++.....-.++- ..
T Consensus 27 ~~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred hhhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 44566677776653322 111111111 12 4556666666665 567788888888876543322111 11
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHhC----CCCChhHHHHH-HHHhHhcCChhHHHHHhcccCC-------CCcccH
Q 037816 158 SFTIILSACDRSELSLVSKMIHCLVYLCG----YEEEVTVGNAL-ITSYFKCGSSSSGRKVFGEMRV-------RNVITW 225 (648)
Q Consensus 158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~ 225 (648)
.-..+++.+.+.+... |....+..++.- ..+-...+.-+ +..+...++...|.+.++.+.. +-+..+
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 1223444455555444 666666655422 11222233333 2223333678878877776641 122233
Q ss_pred HHHHHHHH--HCCCchHHHHHHHHHHhCCC---------CCChhhHHHHHHHh--hccCChHHHHHHHHHHH
Q 037816 226 TAVISGLV--QNQLYEEGLKLFVKMHLGLI---------NPNSLTYLSSVMAC--SGLQALCEGRQIHGILW 284 (648)
Q Consensus 226 ~~li~~~~--~~g~~~~a~~~~~~m~~~~~---------~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~ 284 (648)
-.++.+.. ..+.++++++.++.+..... .|-..+|..++..+ ...|+++.+...++.+.
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33443333 34666777777776632211 23344566666654 34566667666666554
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.80 E-value=2.2 Score=36.18 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=72.1
Q ss_pred HHHHHHHH---HHhcCCChhHHHHhhccCC--CCCcccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816 90 VIWNSLLS---FYLKCDQMRNAVKLFDDMP--MRDTVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163 (648)
Q Consensus 90 ~~~~~li~---~~~~~g~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll 163 (648)
.+.+.||. .-.+.++.+++..+++.+. +|.......+ ...+...|++.+|+.+|+++.+.+ |... ....|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFP-YAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCh-HHHHHH
Confidence 34444444 4466789999999999886 5644433322 345688999999999999987765 5555 556666
Q ss_pred HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHH
Q 037816 164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212 (648)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (648)
..|.....-..-+..-+.+.+.+-.|+.. .|+..+....+...|..
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 66665555555555555566655333332 34555554444444433
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.76 E-value=27 Score=39.55 Aligned_cols=258 Identities=15% Similarity=0.122 Sum_probs=131.6
Q ss_pred CChHHHHHHHHHHHhcCC--ChhHHHHhhccCCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCD--QMRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
.|+ .-...+|.+|.+.+ .++.|+....+... +...+-...+..++- +..+..+|+..+..- | .=..+
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~---Lvdvn~lfn~ALgtY---D---l~Lal 857 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLF---LVDVNELFNSALGTY---D---LDLAL 857 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHh---hccHHHHHHhhhccc---c---hHHHH
Confidence 555 44566777888777 66777776666652 211111111111111 112222333222100 0 00112
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHH
Q 037816 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242 (648)
Q Consensus 163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 242 (648)
+-+-..+.|+.+-.-+++.+.+.. ++..-| .|+. ..++++.|+.-+.++. ...|.-.++.--+.|.+.+|+
T Consensus 858 ~VAq~SqkDPkEyLP~L~el~~m~--~~~rkF--~ID~--~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 858 LVAQKSQKDPKEYLPFLNELKKME--TLLRKF--KIDD--YLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HHHHHhccChHHHHHHHHHHhhch--hhhhhe--eHHH--HHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhh
Confidence 222334455555555555554321 111111 1222 2467888887777765 345666677777888899998
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhh----ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816 243 KLFVKMHLGLINPNSLTYLSSVMACS----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318 (648)
Q Consensus 243 ~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 318 (648)
.++ +|+...+..+..+|+ ....+++| .-+|.++|+.++|.+
T Consensus 929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A----------------------al~Ye~~GklekAl~----- 973 (1265)
T KOG1920|consen 929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEA----------------------ALMYERCGKLEKALK----- 973 (1265)
T ss_pred hee--------ccCHHHHHHHHHHHHHHHHHhccccHH----------------------HHHHHHhccHHHHHH-----
Confidence 876 466666655554443 33333333 335667777777764
Q ss_pred cCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHH
Q 037816 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN 396 (648)
Q Consensus 319 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 396 (648)
+|...|+|++|+.+-.++... -|.. +-..|..-+...++.-+|-++..+.... .
T Consensus 974 -------------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~ 1029 (1265)
T KOG1920|consen 974 -------------AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------P 1029 (1265)
T ss_pred -------------HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------H
Confidence 455677888888777766321 1111 1134445555566666665555444321 1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC
Q 037816 397 NGLINMYSKCGDLEDSIKVFSRMAP 421 (648)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~ 421 (648)
.-.+..|++...+++|..+-....+
T Consensus 1030 ~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHHHHhhHhHHHHHHHHHHhccc
Confidence 2234456666777777776655543
No 287
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=10 Score=34.53 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=16.0
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHH
Q 037816 225 WTAVISGLVQNQLYEEGLKLFVKMH 249 (648)
Q Consensus 225 ~~~li~~~~~~g~~~~a~~~~~~m~ 249 (648)
|.....+|..+.++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4445566666777777777666654
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.61 E-value=4.2 Score=34.76 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=68.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH-----HHHhhh
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGR 507 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~ 507 (648)
+++.+..++|+.-|.++.+.|...=+. ..-.......+.|+...|...|+++-.. .|.+....-+ .-.+..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456777888888888888876432221 1112233456778888888888888654 2322222211 223556
Q ss_pred cCCHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 508 AGLLIEARSFIERMP--VKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 508 ~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.|.+++...-.+.+. -.| -...-.+|.-+-.+.|++..|...|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 677777776666661 112 122334555556667777777777766654
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.60 E-value=0.4 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
+|..+...|...|++++|...|+++++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555666677777777777777777776663
No 290
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.31 E-value=2.3 Score=35.43 Aligned_cols=115 Identities=12% Similarity=0.179 Sum_probs=76.6
Q ss_pred ccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH--HHHHHHHHHHhcCCChhHHHHhhccCC---------CCCcccHH
Q 037816 56 KEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMP---------MRDTVSWN 124 (648)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~y~ 124 (648)
..|++....++|.+.+.. ..+-|+..+.+++. ...|.++.-....+++...+.+++.+. ..+-.+|+
T Consensus 6 k~g~~~~nL~~w~~fi~~--~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~ 83 (145)
T PF13762_consen 6 KLGNVLANLEVWKTFINS--HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFH 83 (145)
T ss_pred cCcchhhhHHHHHHHHHH--HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHH
Confidence 456666666777766666 44444444445554 345788887777788888888777775 12556788
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChH
Q 037816 125 TMVSGFLRNGE-FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL 173 (648)
Q Consensus 125 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~ 173 (648)
.++.+...... ---+..+|+.|++.+.+++.. .|..++.+|.+....+
T Consensus 84 ~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~-dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 84 IIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPS-DYSCLIKAALRGYFHD 132 (145)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCCc
Confidence 88888766555 445677778887777767777 7888888777664433
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.30 E-value=11 Score=37.52 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP----DSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
....+|..+...+.+.|.++.|...+.++...++ ..+.+....+..+...|+..+|+..++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3466788888999999999999999999887552 24677778889999999999999999988873
No 292
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.09 E-value=3.1 Score=36.42 Aligned_cols=101 Identities=10% Similarity=-0.008 Sum_probs=67.0
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHc
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV-LVWQALLGACSIH 540 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~ 540 (648)
-+...|++++|..-|..+... +++. ...|..-.-++.+.+.++.|++-..+. .+.|+. .....-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 356678888888888888763 3332 234555556777888888888777666 444431 1122223467788
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
..++.|+.-|+++++.+|....+-...+++
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 899999999999999999876554444443
No 293
>PRK09687 putative lyase; Provisional
Probab=90.69 E-value=16 Score=34.97 Aligned_cols=136 Identities=11% Similarity=-0.054 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-LVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
+..+-...+.++.+.++ .++...+-.+.+ .+|...-...+.++...+ ....+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333344444444444 344444444443 233333333444444332 12234444444432 2445555555
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+.++++.|+..-.-.+.+.+. .++ .....+.++...|+. +|+..+.++.+..| |..+-....+++
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 555666555322222223332 122 123445555666664 46666666665555 334444444433
No 294
>PRK09687 putative lyase; Provisional
Probab=90.38 E-value=17 Score=34.79 Aligned_cols=75 Identities=9% Similarity=0.009 Sum_probs=40.1
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
++..+-...+.++.+.|+......+.+.+..++ .....+.++...|.. +|...+..+.+.. ||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 345555555666666666433333333333333 223456666666664 5777777776533 46655555555543
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.31 E-value=7.6 Score=37.43 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816 340 EEAMQLFVKMVKAGIEIDP--NMVSAVLGVFGVDTS--LGLGKQIHSLIIKSDFTSNPFVNNGLIN 401 (648)
Q Consensus 340 ~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 401 (648)
+.+..+|+.+.+.|+..+. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4666777788877765543 344444444333332 3477788888888898888877765543
No 296
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.02 E-value=3.7 Score=33.47 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHh-cCCCC-CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 543 SEMGKYAAEKLFL-AQPDS-PAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 543 ~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+.+.+++.+.+ ..|.. ....+.++-++.+.|+|+.++++++.+.+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3344445555443 22221 22333444445555555555555555444
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.97 E-value=19 Score=34.57 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=16.9
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 037816 568 ANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 568 ~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+..+.+.++|++|.++|+-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445778999999999998654
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.91 E-value=33 Score=37.27 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCC-------chHHHHHHHHHHHcC
Q 037816 95 LLSFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGE-------FDMGFGFFKRSLELG 150 (648)
Q Consensus 95 li~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~-------~~~A~~~~~~m~~~~ 150 (648)
+|--|.|+|++++|.++..+.. ++....+-..+..|....+ -++...-|++..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4556778888888888883333 3344556666777766432 235555666665554
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.73 E-value=0.47 Score=28.06 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998774
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=4.7 Score=41.57 Aligned_cols=162 Identities=8% Similarity=0.062 Sum_probs=96.6
Q ss_pred CcccHHHHHHH-----HHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhH
Q 037816 119 DTVSWNTMVSG-----FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193 (648)
Q Consensus 119 ~~~~y~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (648)
++.+|..++.. ....|+++.|-.++..+.+ . ....+...+.+.|..++|..+ .+|..-
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~-~rt~va~Fle~~g~~e~AL~~---------s~D~d~ 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------E-IRTKVAHFLESQGMKEQALEL---------STDPDQ 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCch-------h-hhhhHHhHhhhccchHhhhhc---------CCChhh
Confidence 44555544433 3345666666665544332 1 445556666666666665544 333322
Q ss_pred HHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCh
Q 037816 194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL 273 (648)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 273 (648)
-.....+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...+. |..|+-.+...|+-
T Consensus 643 ---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 643 ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred ---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 1233456788888877765443 456688888888888998888888877754 55666677777776
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816 274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF 317 (648)
Q Consensus 274 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 317 (648)
+....+-....+.|.. |.-.-+|...|+++++.+++.+
T Consensus 709 ~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 709 EGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 6665555555555422 2333445566666666666543
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.41 E-value=27 Score=35.64 Aligned_cols=175 Identities=8% Similarity=0.004 Sum_probs=92.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
.|.....+++..+....+..-++.+..+|. ..+...|..++.+|... ..+.-..+|+++.+.. -|......-+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 344444555666666666666666666554 23555666666666666 4466666777666643 233333322222
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISP------RAEHYACVVDMVGRAGLLIEARSFIERM----PVKPDVLVWQALLGACS 538 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 538 (648)
+...++.+.+..+|.++..+ +-| -...|..|...- ..+.+..+.+..++ +..--...+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33336666666666666653 333 122344333322 23444445444444 22222334444445566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
...++.+|++++..+++.+..|..+...++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 6677777777777777766666655555555443
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.20 E-value=3 Score=34.74 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=18.5
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
+...|++.+|+++++.+.+..+..+..-..++.++.-.|+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4445555555555555544444433333344444444444
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.03 E-value=40 Score=37.08 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=29.2
Q ss_pred HcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 436 RHGNGFKALELYEEMKLE----GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
..|+++.|+++.+..... -..+....+..+..+..-.|++++|..+.....+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 356666776666665542 1122334445555556666777777766665554
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.90 E-value=16 Score=32.23 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMPVKPD--VLVWQALLGACSI 539 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~ 539 (648)
..+...+++++|..-++..... |.-..+ -.|.......|.+++|+..++... .++ ......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 4567778888888777766542 222222 234556777788888888887762 221 2223334456788
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 037816 540 HGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~ 559 (648)
.|+-++|+..|+++++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888877643
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.78 E-value=6.8 Score=39.22 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred HcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 436 RHGNGFKALELYEE-MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 436 ~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
..|+...|-+-+.. +....-.|+.......| ....|+++.+.+.+....+ -+.....+..++++...+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 44555555443333 33222233333332222 3455666666666665544 2334555556666666666666666
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 515 RSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 515 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
...-.-| +.. -++.............|-++++...+++++.++|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 6665555 111 122222222223334455666666666666666553
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.73 E-value=10 Score=33.29 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
.+..+...|++.|+.+.|++.|.++.+....|.. ..+-.+|......+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455566666666666666666666665433432 2345556666666666666666666554
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.60 E-value=72 Score=39.46 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
..+|-...+.....|.++.|...+-.+.+..+ +.++...+..+...|+...|+.++++..+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 56788888888899999999998888877774 5688999999999999999999999988654
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.58 E-value=0.64 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+|..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998774
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=21 Score=33.02 Aligned_cols=255 Identities=15% Similarity=0.141 Sum_probs=136.1
Q ss_pred CCHHHHHHHHHhccCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CcCHHHHHHHHHHHhccCC
Q 037816 306 GSVEDAWQIFEFAEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA---GI--EIDPNMVSAVLGVFGVDTS 373 (648)
Q Consensus 306 ~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 373 (648)
..+++|+.-|.++.+- ...+...+|....+.+++++.+..+.+|..- .+ .-+..+.+.++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 4556666666555431 1223345677777788888877777776431 11 2344556666666666666
Q ss_pred hhHHHHHHHHHHH----h-CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---------------ChhHHHHHHHH
Q 037816 374 LGLGKQIHSLIIK----S-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---------------NSVSWNSMIAA 433 (648)
Q Consensus 374 ~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~ 433 (648)
.+...++++.-.+ . +-..--.+-+.|...|...|.+....+++.++... -...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 6655555443221 1 11111223345666777777887777777766421 13467777778
Q ss_pred HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCC--CC---ChhHHHHHH
Q 037816 434 FARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHAC-----SHVGLVNKGMEFLKSMTEVHRI--SP---RAEHYACVV 502 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~~---~~~~~~~l~ 502 (648)
|...++-.....++++...- ..-|-+..... |+-| .+.|.+++|-.-|-++.+.+.- .| +.--|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88877777777778776542 22355444433 3333 5678888876555444442221 12 122355566
Q ss_pred HHhhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH
Q 037816 503 DMVGRAGL----LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566 (648)
Q Consensus 503 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 566 (648)
.++.+.|- -.+| +-.+..|.......++.+|.. ++..+-++++..-...--++|.+...
T Consensus 280 NMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh 342 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREH 342 (440)
T ss_pred HHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHH
Confidence 66666651 1111 011334556667788887754 44444444443333333344444433
No 310
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.15 E-value=16 Score=31.51 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037816 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350 (648)
Q Consensus 296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 350 (648)
..++..+...|++-+|.++.+.....+......++.+-.+.++...-..+|+-..
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666777777766666544444455555555555555544444444433
No 311
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.05 E-value=5.4 Score=37.66 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
+..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444455555555555555555555533 22555555555555555555555555555443
No 312
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.01 E-value=17 Score=34.39 Aligned_cols=55 Identities=11% Similarity=-0.004 Sum_probs=26.0
Q ss_pred CChhHHHHHHHHhHhcCChhHHHHHhcccC-----CCCcccHHHHHHHHHHCCCchHHHH
Q 037816 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMR-----VRNVITWTAVISGLVQNQLYEEGLK 243 (648)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~ 243 (648)
++..+...++..+++.+++.+-.++++... ..|...|..+|+.....|+..-..+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 344444444555555555555555444332 1244455555555555555443333
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.81 E-value=3.8 Score=34.83 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred hHHHHHHHHh---hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 496 EHYACVVDMV---GRAGLLIEARSFIERM-PVKPDVLVWQAL-LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 496 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
.+.+.|++.. .+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444444443 4566777887777777 445543333222 2346777888888888888777777666666666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC
Q 037816 571 YSCSGRWKERAKAIKRMKEMGVDK 594 (648)
Q Consensus 571 ~~~~g~~~~A~~~~~~m~~~~~~~ 594 (648)
+...|+.+ =..+-+++.+.+..|
T Consensus 88 L~~~~D~~-Wr~~A~evle~~~d~ 110 (160)
T PF09613_consen 88 LYALGDPS-WRRYADEVLESGADP 110 (160)
T ss_pred HHHcCChH-HHHHHHHHHhcCCCh
Confidence 66666532 122234445544433
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.77 E-value=16 Score=32.25 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=66.1
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816 500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL-----LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 574 (648)
.+...+..+|++++|+..++..--.|....+..+ .+.....|.+++|...++...+..= .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3456788999999999999976223434444443 3556778999999888876533211 123455778899999
Q ss_pred CChHHHHHHHHHHHhCC
Q 037816 575 GRWKERAKAIKRMKEMG 591 (648)
Q Consensus 575 g~~~~A~~~~~~m~~~~ 591 (648)
|+-++|+..|++.+..+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999998876
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.53 E-value=46 Score=36.00 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 424 (648)
..-..|+..|...++++.|...+-....+++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444588899999999999999888876543
No 316
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=87.32 E-value=0.65 Score=37.40 Aligned_cols=40 Identities=55% Similarity=1.016 Sum_probs=33.4
Q ss_pred ceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCCCCC
Q 037816 597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648 (648)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~ 648 (648)
|++|..+ +.|..++..||.. ++..+|...||.|+.+++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~ 41 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGH 41 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCC
Confidence 5788776 8999999999998 66677888899999887764
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.88 E-value=1.5 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=12.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 534 LGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
..++.+.|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444445555555555555544443
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.82 E-value=8.9 Score=33.25 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=39.6
Q ss_pred CCCCC-HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 522 PVKPD-VLVWQALLGACSIHG-----------DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 522 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.+.|+ ..++..+..+|...+ .+++|...|+++...+|.+ ..|..-.... ++|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence 44565 345555555554332 2667777888888899998 5666555554 357888888887
Q ss_pred CCCCCC
Q 037816 590 MGVDKE 595 (648)
Q Consensus 590 ~~~~~~ 595 (648)
.+..+.
T Consensus 136 ~~~~~q 141 (186)
T PF06552_consen 136 QGLGQQ 141 (186)
T ss_dssp SSS---
T ss_pred HHhhhh
Confidence 765544
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.70 E-value=4.9 Score=30.59 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 503 (648)
+.-++.+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446666777777778899999999999999999999999999998886433 34556666554
No 320
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.51 E-value=5.1 Score=30.86 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 521 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
+..-|++....+.+++|.+.+|+..|+++++.+.....+....|..+++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 3677999999999999999999999999999998766655556766644
No 321
>PRK10941 hypothetical protein; Provisional
Probab=86.44 E-value=6.2 Score=37.30 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
.+.+-.+|.+.++++.|++..+.++...|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566778999999999999999999999999999999999999999999999999987753
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.39 E-value=55 Score=35.72 Aligned_cols=248 Identities=11% Similarity=-0.009 Sum_probs=121.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAG-IEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS 412 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (648)
..+.+.|..++....... ..+... ....+.......+....+...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345577777777664332 222221 22222222222222444444444433221 2333444445555577777777
Q ss_pred HHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHhHHh
Q 037816 413 IKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV-NKGMEFLKSMTEV 488 (648)
Q Consensus 413 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~ 488 (648)
...+..|.+. ...-.-=+..++...|+.++|...|+.+.. .. +|..++.+ .+.|.. .-.......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~- 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS- 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh-
Confidence 7777776521 122222245555557777777777777632 11 23222221 111110 000000000000
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCCccHH
Q 037816 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ---PDSPAPYI 565 (648)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~ 565 (648)
.+..+ .--.-+..+...|+...|...+..+....+......+.....+.|.++.++.........+ -.-|..|.
T Consensus 404 -~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 -ALTQG--PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred -hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00000 1112345566778999998888777223455666666666778898888887776543211 11234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 037816 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKET 596 (648)
Q Consensus 566 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 596 (648)
..+..+.+.-.++.+.-.---..+.++.|..
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 6767676666777766443344567777764
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.36 E-value=0.97 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHH
Q 037816 562 APYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777788877777664
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.28 E-value=1.3 Score=27.59 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577888888888999988888888765
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.23 E-value=4.7 Score=30.65 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
..-|++....+.+++|.+.+|+..|+++++.+......+...|..+..
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 677899999999999999999999999999887555544455655543
No 326
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.69 E-value=4.4 Score=31.18 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503 (648)
Q Consensus 442 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 503 (648)
+..+-+..+....+-|++......+++|.+.+++..|.++++.++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556667777778899999999999999999999999999999988644 33447776664
No 327
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.51 E-value=23 Score=30.55 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred HHhCCCHHHHHHHHhhcCCCChhHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHhccCc
Q 037816 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMI-----AAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLL--HACSHVGL 474 (648)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll--~~~~~~g~ 474 (648)
+.+.+..++|+.-|..+.+.+.-.|..|. ......|+...|...|++.-...-.|-.. -...|= ..+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35667777777777777766555555443 23456677777777777776644333322 111221 22466777
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
++......+.+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 77777666666542 33334444455666666777777777777776
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.23 E-value=1.1 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 563 PYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999874
No 329
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.00 E-value=11 Score=33.09 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRN------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS--- 464 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~--- 464 (648)
..+..+...|++.|+.+.|.+.|.++.+.. ...+-.++......+++..+...+.+....-..+.......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888888899999988888877542 34566677788888899888888877765322222221111
Q ss_pred HHHH--HhccCcHHHHHHHHHHhHH
Q 037816 465 LLHA--CSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 465 ll~~--~~~~g~~~~A~~~~~~~~~ 487 (648)
...+ +...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 2345677777666665543
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=8.1 Score=36.54 Aligned_cols=98 Identities=11% Similarity=0.160 Sum_probs=68.1
Q ss_pred hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-R--------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457 (648)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 457 (648)
.|.+....+...++..-....+++.++..+-+++. + +.++|-.++ -.=++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 34555555666666666666778888777766653 2 222332222 2335678888888888889999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
|..+++.+|+.+.+.+++..|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888887776553
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.45 E-value=2.1 Score=25.19 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998763
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.32 E-value=3.2 Score=39.52 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=62.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc-
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA- 508 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 508 (648)
..-|.+.|.+++|+..|..-.. +.| |.+++..-..+|.+...+..|..-...+... -...+.+|.+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence 4568999999999999998877 457 8899988889999999998887776666542 12344555554
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH
Q 037816 509 ------GLLIEARSFIERM-PVKPDV 527 (648)
Q Consensus 509 ------g~~~~A~~~~~~~-~~~p~~ 527 (648)
|...+|.+-++.. .+.|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5555665555555 566763
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=2.9 Score=37.82 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816 508 AGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
..++..|+..|.+. .+.|++.+ |..=+-++.+..+++.+..--.+++++.|+.......++..+.....+++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34455555555544 55666533 34444456666777777777777777777777777777777777777777777777
Q ss_pred HHHh
Q 037816 586 RMKE 589 (648)
Q Consensus 586 ~m~~ 589 (648)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 6643
No 334
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.21 E-value=46 Score=32.17 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCH
Q 037816 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VG----LVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLL 511 (648)
Q Consensus 440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 511 (648)
+++.+.+++.|.+.|++-+..+|.+....... .. ...+|..+|+.|++++.+-- +-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888999988887776653333322 22 35578899999998754433 33344444322 33433
Q ss_pred ----HHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHhcCChHH
Q 037816 512 ----IEARSFIERM---PVKP-DVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAP-YILMANIYSCSGRWKE 579 (648)
Q Consensus 512 ----~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~ 579 (648)
++++.+|+.+ ++.. |..-+.+-+-++..... ..++.++++.+.+.+-.-... |..++-+..-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3445555554 4443 33333333333332222 446677777777655332233 4444433333333325
Q ss_pred HHHHHHHH
Q 037816 580 RAKAIKRM 587 (648)
Q Consensus 580 A~~~~~~m 587 (648)
..+.+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444444
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.07 E-value=3.5 Score=35.64 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC-----------hHHHHHHHHHHHh
Q 037816 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR-----------WKERAKAIKRMKE 589 (648)
Q Consensus 542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 589 (648)
.+++|+.-|++++.++|+...++..++.+|...|. +++|.+.|++..+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 36677788888899999999999999999887654 4555556665555
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=1.4e+02 Score=37.30 Aligned_cols=95 Identities=7% Similarity=-0.095 Sum_probs=44.7
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcC
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCG 306 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 306 (648)
|-.....|++..|...|+.+.+.+ |+ ..+++.+++.....+.++...-..+.....- .+....+ +.=+.+--+.+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhc
Confidence 334455666777777777665432 33 4456555555555555555444333222211 1111111 22222334555
Q ss_pred CHHHHHHHHHhccCCCcccHHHH
Q 037816 307 SVEDAWQIFEFAEELDGVSMTVI 329 (648)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~~~~~l 329 (648)
+++....... +.+..+|...
T Consensus 1533 qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred chhhhhhhhh---cccccchhHH
Confidence 5555555544 3444455443
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.04 E-value=12 Score=37.50 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=84.6
Q ss_pred HHHHHhCCCHHHHHHH-HhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816 400 INMYSKCGDLEDSIKV-FSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (648)
|.--...|++..|.+- +..+. +.++.........+...|+++.+...+...... +.....+..++++.....|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 4444566777766543 44333 223333333444567789999999888776543 3456678889999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 037816 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLG 535 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~ 535 (648)
.|...-..|... .+ -++++...-...--..|-++++.-.|++. .+. |...-|...+.
T Consensus 375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 999999988763 33 24444433333344567788999888887 333 33333444443
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.93 E-value=4 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563 (648)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 563 (648)
.+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567899999999999999999999998543
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.77 E-value=6.2 Score=35.22 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+.-+..+.+.+.+.+|+...+.- +-+| |..+-..++..++-.|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 444566777788888888877654 4455 455566677888888888888888888888887753
No 340
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.63 E-value=1.4 Score=37.32 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=52.9
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHH
Q 037816 162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG 241 (648)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 241 (648)
++..+...+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555556666666666666555456677788888888888877888888774332 3334556666666666666
Q ss_pred HHHHHHH
Q 037816 242 LKLFVKM 248 (648)
Q Consensus 242 ~~~~~~m 248 (648)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666655
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=81.57 E-value=2.9 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.113 Sum_probs=11.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816 532 ALLGACSIHGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p 558 (648)
.+...+...|+++.|...++++++..|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333444444444444444444444333
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.56 E-value=8.6 Score=34.11 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCccHHHHHHHHHhcCChHHHH
Q 037816 512 IEARSFIERMPVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD----SPAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 512 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 581 (648)
++|.+.|-.+...| +....-..+..|....|.+++++++-+++++.++ |+.++.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45555555551111 2233333344455577888888888888765432 5778888888888888888774
No 343
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.50 E-value=2.4 Score=35.75 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHH
Q 037816 47 ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM 126 (648)
Q Consensus 47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~l 126 (648)
...++..+.+.+.+......++.+... +- ..+....+.++..|++.++.+...++++.... .-...+
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~--~~--------~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~ 76 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKE--NK--------ENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKA 76 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHT--ST--------C-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhc--cc--------ccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHH
Confidence 345677888888899999999999876 44 56788999999999999888999999884432 444566
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 037816 127 VSGFLRNGEFDMGFGFFKRSL 147 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~ 147 (648)
+..+.+.|.+++|.-+|.++.
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHhcchHHHHHHHHHHcc
Confidence 777777777777777777643
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.11 E-value=4 Score=25.26 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 528 LVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.+++.|...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5678888888899999999998888864
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.08 E-value=18 Score=30.37 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=56.8
Q ss_pred HHHHHHHHHH---HhcCCChhHHHHhhccCC--CCCcccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816 89 TVIWNSLLSF---YLKCDQMRNAVKLFDDMP--MRDTVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162 (648)
Q Consensus 89 ~~~~~~li~~---~~~~g~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l 162 (648)
..+.+.||.. -...++.+++..+++.|. +|+..-...+ ...+...|++.+|+.+|++..+.+ +... .-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p-~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPP-YGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCch-HHHHH
Confidence 3444445443 344789999999998886 5543322222 334578999999999999998875 3333 33344
Q ss_pred HHHhhccCChHHHHHHHHHHHHhCCCCC
Q 037816 163 LSACDRSELSLVSKMIHCLVYLCGYEEE 190 (648)
Q Consensus 163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 190 (648)
+..|.....-..-...-..++..|-.|+
T Consensus 84 ~A~CL~al~Dp~Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 84 LALCLNAKGDAEWHVHADEVLARDADAD 111 (153)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCHh
Confidence 4444443333333334444444443333
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.95 E-value=3.3 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 565 ILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
..++.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467889999999999999999987644
No 347
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.59 E-value=24 Score=27.19 Aligned_cols=62 Identities=10% Similarity=-0.005 Sum_probs=38.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362 (648)
Q Consensus 298 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 362 (648)
-+..+...|++++|..+.+...-||..+|-+|-. .+.|..+++...+.+|...| .|....|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445566777777777777777777777765544 35566666666666666655 44444443
No 348
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.46 E-value=12 Score=34.01 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCChHH-------HHHHHHHHHhcC--CC----CCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 528 LVWQALLGACSIHGDSEM-------GKYAAEKLFLAQ--PD----SPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
..+.-+.+.|...|+.+. |.+.|+++.+.. |. +......++.+..+.|++++|.++|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344555566777777444 444555554433 22 23567788999999999999999999997755
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.34 E-value=9.7 Score=34.05 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChhHHHHHHHH
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDM 504 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 504 (648)
+.+.-++.+.+.+...+|+...++-++.. +-|..+-..+++.+|-.|++++|..-++-.-+. ....+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999999888877753 235556667788889999999998777766431 0223345566666653
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.64 E-value=50 Score=32.99 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCC-CCccHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 037816 526 DVLVWQAL---LGACSIHGDSEMGKYAAEKLFLAQPD-SPAPYILMANIYS-CSGRWKERAKAIKRMKE 589 (648)
Q Consensus 526 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 589 (648)
|...|.++ +..+.+.|-+..|.++.+-++.++|. ||-.-...++.|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445444 35577889999999999999999998 8888888888776 77888888888887655
No 351
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.87 E-value=3.9 Score=24.30 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSI 413 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~ 413 (648)
|-+...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555555555555556555553
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.65 E-value=99 Score=33.16 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHH
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLIEARSFIERMPVKPDVLVWQALLGACS----IHGDSEMGKY 548 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~ 548 (648)
+.+.|..++....+. | .|+....-..+..... ..+...|.++|......-....+-.+..+|. ...+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 455666666666552 2 2233222222222222 2345667777766622222222222222221 2236777777
Q ss_pred HHHHHHhcCCCCCccHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCC
Q 037816 549 AAEKLFLAQPDSPAPYILMANI--YSCSGRWKERAKAIKRMKEMGVDKE 595 (648)
Q Consensus 549 ~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~~~ 595 (648)
+++++.+.++. .+...+... +.. ++++.+.-.+..+...|..-.
T Consensus 386 ~~k~aA~~g~~--~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 386 YYKKAAEKGNP--SAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHHHccCh--hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHH
Confidence 77777776632 222222222 223 666666666666666555443
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.56 E-value=1.3 Score=42.28 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=63.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816 507 RAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
..|.+++|++.|... ...|. ...|.--..++.+.+....|++-+..+++++|+....|-.-..+-.-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345677777777665 33333 3334444556777777888888888888888887777777777777778888888888
Q ss_pred HHHHhCCCCCCCc
Q 037816 585 KRMKEMGVDKETG 597 (648)
Q Consensus 585 ~~m~~~~~~~~~~ 597 (648)
....+.++.+..+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8888877766654
No 354
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=77.92 E-value=1.2e+02 Score=33.66 Aligned_cols=217 Identities=13% Similarity=0.018 Sum_probs=117.3
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCch----h---HHHHHH-HHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHH
Q 037816 368 FGVDTSLGLGKQIHSLIIKSDFTSNP----F---VNNGLI-NMYSKCGDLEDSIKVFSRMAP--------RNSVSWNSMI 431 (648)
Q Consensus 368 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~li-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~ 431 (648)
.....++++|..+..++...-..|+. . .++.|- ......|+++.|.++-+.... ..+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44667888888888776643222221 1 222221 122356888888877765432 2566777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHH--HHHHhccCcHH--HHHHHHHHhHHhcCCCC-----ChhHHH
Q 037816 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTF---LSL--LHACSHVGLVN--KGMEFLKSMTEVHRISP-----RAEHYA 499 (648)
Q Consensus 432 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~l--l~~~~~~g~~~--~A~~~~~~~~~~~~~~~-----~~~~~~ 499 (648)
.+..-.|++++|..+.++..+..-+-+...+ ..+ ...+...|... +....+......+.... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988877654222233322 222 23355667333 33333333332211111 123334
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-----CCCCC--HHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCC-C-ccHHHHH
Q 037816 500 CVVDMVGRAGLLIEARSFIERM-----PVKPD--VLVW--QALLGACSIHGDSEMGKYAAEKLFLAQPDS-P-APYILMA 568 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~--~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-~~~~~l~ 568 (648)
.+..++.+ ++.+..-.... ...|. .... ..|+......|+.++|...++++..+.... + ..|...+
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 44333322222 11222 2222 256677788999999999999987644222 2 2222221
Q ss_pred ---H--HHHhcCChHHHHHHHHHH
Q 037816 569 ---N--IYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 569 ---~--~~~~~g~~~~A~~~~~~m 587 (648)
. .....|+.+++.....+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 1 233679999998887764
No 355
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.75 E-value=19 Score=32.87 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.-.++...|++-++++.-..++...|.+..+|..-+.+-+..=+.++|..-+.+.++.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3455677899999999999999999999999999999888888889999988888774
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.96 E-value=8.8 Score=35.92 Aligned_cols=60 Identities=13% Similarity=0.018 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+......|...|.+.+|.++-++++..+|-+...+-.+...+...|+--.|..-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444557788999999999999999999999999999999999999998888888887743
No 357
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=76.81 E-value=57 Score=29.40 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=84.3
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChh-HHHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSV-SWNSMIA--AFARHGNGFKALELYEEMKLEGVEPTDV--TFLSLL 466 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll 466 (648)
-+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=+ ++---|++.-|.+-+.+.-+.+ +.|+. .|.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3567787877788888999998888887654332 2222212 2234578888877777766644 22321 122121
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH-HhhhcCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD-MVGRAGLLIEARSFIERMPVK------PDVLVWQALLGACSI 539 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~------p~~~~~~~l~~~~~~ 539 (648)
...-++.+|..-+.+=-+ + .+..-|...+- .|.-.=..+.+.+-....... --..||-.|..-+..
T Consensus 177 ---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 233355566544433322 2 23333333222 222111122222222211100 013566777778888
Q ss_pred cCChHHHHHHHHHHHhcCC
Q 037816 540 HGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p 558 (648)
.|+.++|..+|+-++..+.
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 8999999999988876654
No 358
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.45 E-value=1.2e+02 Score=32.99 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=25.1
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhcc
Q 037816 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270 (648)
Q Consensus 227 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 270 (648)
++|-.|.++|++++|.++..+... ........+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 346667777777777777755433 3444455666666666554
No 359
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.13 E-value=22 Score=33.83 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=67.0
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCc------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHH
Q 037816 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG------VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360 (648)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 360 (648)
|.+....+...++..-....++++++..+-++.+.-. .+-.+.++ ++-.-++++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 3344444445555555556677777777666654211 11112222 3344567788888888888899999999
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSD 388 (648)
Q Consensus 361 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 388 (648)
++.+|+.+.+.+++..|..+...|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999998888877776544
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.97 E-value=1.2e+02 Score=32.61 Aligned_cols=147 Identities=12% Similarity=0.050 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh---hh----cCCH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV---GR----AGLL 511 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~ 511 (648)
+...|..++++..+.| .|...--...+..+.. +.++.+...+..+.+. +.+.....-..++... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 4566666666666665 2322221222222223 5555555554444442 3322111111111111 11 1245
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc---CChHHHHHHH
Q 037816 512 IEARSFIERMPVKPDVLVWQALLGACSIH----GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS---GRWKERAKAI 584 (648)
Q Consensus 512 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~ 584 (648)
+.+...+.+....-+......|...|..- .+++.|...+.++.... ......++..+... ..+..|.+++
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 55556666553333444444454444322 35777777777776555 45555555555433 1156777777
Q ss_pred HHHHhCC
Q 037816 585 KRMKEMG 591 (648)
Q Consensus 585 ~~m~~~~ 591 (648)
++....+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 7665543
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.76 E-value=5.2 Score=21.96 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=8.9
Q ss_pred HHHHHhhhcCCHHHHHHHH
Q 037816 500 CVVDMVGRAGLLIEARSFI 518 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~ 518 (648)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444455555554444
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.48 E-value=8.9 Score=29.20 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455566667777777777777777777777777776666554
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.93 E-value=37 Score=26.25 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037816 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453 (648)
Q Consensus 374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 453 (648)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|-. -+.|-.+.+..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555555544443321 22222223445678899999999999998889888877644 3667777788888888887
Q ss_pred CCCCCHHHHHH
Q 037816 454 GVEPTDVTFLS 464 (648)
Q Consensus 454 ~~~p~~~~~~~ 464 (648)
| .|....|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 7 565555543
No 364
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.82 E-value=30 Score=36.08 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=41.3
Q ss_pred hcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHH
Q 037816 100 LKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179 (648)
Q Consensus 100 ~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~ 179 (648)
.+.|+++.|.++..+.. +..-|..|..+....|++..|.+.|.+.. .|..|+-.+...|+.+....+-
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHH
Confidence 34566666666544433 44557777777777777777777776644 3334444444455444444444
Q ss_pred HHHHHhC
Q 037816 180 CLVYLCG 186 (648)
Q Consensus 180 ~~~~~~~ 186 (648)
....+.|
T Consensus 716 ~~~~~~g 722 (794)
T KOG0276|consen 716 SLAKKQG 722 (794)
T ss_pred HHHHhhc
Confidence 4444433
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.39 E-value=31 Score=30.71 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHhhhcCCHHHH
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI--SPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
+.|.+.|-++...+.--++.....|...|. ..+.+++.+++-++.+...- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444432223333222222222 33444444444444432111 22444444444444444444433
No 366
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=73.20 E-value=7.5 Score=39.16 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=44.3
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816 506 GRAGLLIEARSFIERM-PVKPDVLVWQALL-GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 583 (648)
.+.+.++.|..++.++ ...|+-..|-+.= .++.+.+++..|+.-+.++++..|.....|..-+.++.+.+.+.+|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3444555555555544 4444433322221 4455556666666666666666666555666666666666666666655
Q ss_pred HHHHHh
Q 037816 584 IKRMKE 589 (648)
Q Consensus 584 ~~~m~~ 589 (648)
|+....
T Consensus 95 l~~~~~ 100 (476)
T KOG0376|consen 95 LEKVKK 100 (476)
T ss_pred HHHhhh
Confidence 555433
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.49 E-value=6.8 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++..++.++...|++++|...+++..+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999988763
No 368
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.00 E-value=41 Score=26.94 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCCCCCcc----HHHHHHHHHhcCChHHHHHHHHHH
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLF-------LAQPDSPAP----YILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
|..++..|-.++...|++++++...+.++ +++.+.... ..+-+.++...|+.++|...|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34556666777778888877766555554 344444333 334556777889999999888764
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.81 E-value=11 Score=38.91 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=70.1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-P-VKPDVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 545 (648)
...|+...|...+..+. ...| .......|.+.+.+.|...+|-.++.+. . ....+.++..+.+++.-..+++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34577778888777774 3344 3334555667777777777777776654 2 23446677778888888888888
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
|++.++.+.++.|+++.+-+.+..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888888877777665544
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.55 E-value=8 Score=28.23 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=31.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCcc---HHHHHHHHHhcCChHHHHHH
Q 037816 539 IHGDSEMGKYAAEKLFLAQPDSPAP---YILMANIYSCSGRWKERAKA 583 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~ 583 (648)
...+.++|+..++++++..++.+.- +-.++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888887766554443 34555677777888777765
No 371
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.21 E-value=92 Score=33.65 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=34.0
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP 563 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 563 (648)
-..+++.|.+++..++|+-. + .+.+-.-.+|+.+|++..+++.+++|+....
T Consensus 351 n~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred HHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 34566777777777666543 1 2233345678888888888888888875433
No 372
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=70.65 E-value=1.2e+02 Score=30.20 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=123.4
Q ss_pred cCChhHHHHHHHHHH-----HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHH
Q 037816 371 DTSLGLGKQIHSLII-----KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALE 445 (648)
Q Consensus 371 ~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 445 (648)
.++.+.|.+-+-... ..+...+..++..++..|...++|+.--+.+. ...-++|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHH
Confidence 455555554433322 22344455566666666666666654333221 11234566665554
Q ss_pred H--HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816 446 L--YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP---RAEHYACVVDMVGRAGLLIEARSFIER 520 (648)
Q Consensus 446 ~--~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (648)
. .+-|.-..-.||..|-..++..+ +...+- .+-. ....-..|.+.+-..|+.++|..++.+
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tL-------------r~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~e 156 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETL-------------RTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCE 156 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHH-------------HHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 2 22232222345555544444433 111110 1100 122233466778889999999999988
Q ss_pred CCCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcC---CC----CCccHHHHHHHHHhcCChHHHH
Q 037816 521 MPVKPDVLVWQAL------------LGACSIHGDSEMGKYAAEKLFLAQ---PD----SPAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 521 ~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~~~~A~ 581 (648)
.++ .||.++ ++.|...+|+-.|.-+.+++.... |+ -...|..++....+.+.|=++-
T Consensus 157 l~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~ 232 (439)
T KOG1498|consen 157 LQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVC 232 (439)
T ss_pred cch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHH
Confidence 842 233222 356778899999988888886432 22 1246888888888999999999
Q ss_pred HHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCCh
Q 037816 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQA 620 (648)
Q Consensus 582 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (648)
+.|+.+.+.|......--|+.+-..+-.|+......+..
T Consensus 233 ~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQ 271 (439)
T KOG1498|consen 233 RSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQ 271 (439)
T ss_pred HHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHH
Confidence 999999888866664445655544444555544333333
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.08 E-value=57 Score=30.69 Aligned_cols=56 Identities=7% Similarity=0.110 Sum_probs=29.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 385 (648)
|.+++..++|.+++...-+--+.--+.-+...-..|-.|.+.+.+..+.++-..-.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 67778888888877765444332111122233333334555555555555544433
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.89 E-value=90 Score=28.60 Aligned_cols=18 Identities=6% Similarity=0.287 Sum_probs=8.8
Q ss_pred hccCcHHHHHHHHHHhHH
Q 037816 470 SHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~ 487 (648)
...+++.+|+.+|+++..
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555555544
No 375
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.54 E-value=9.2 Score=21.82 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
|+.+.|..+|++++...|.++..+...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888888999888888877777766553
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=69.34 E-value=1.3e+02 Score=30.28 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=115.6
Q ss_pred CCCHHHHHHHHhhcCC----CChhHHHHHHHHHH-HcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCcHH
Q 037816 406 CGDLEDSIKVFSRMAP----RNSVSWNSMIAAFA-RHGNGFKALELYEEMKLEGVEPTD----VTFLSLLHACSHVGLVN 476 (648)
Q Consensus 406 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~ 476 (648)
.|+.+++.+.+..+.. +....|-.|+.+-. ...+...|+++|+...- ..|.. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888999999988864 34566777776644 45679999999998765 33543 23444555678899999
Q ss_pred HHHHHHHHhHHhcCCCCChhH-HHHHHHHhhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 477 KGMEFLKSMTEVHRISPRAEH-YACVVDMVGRAG---LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (648)
++..+-......|...|=..- +..+...+.+.+ ..+.-..++..|.-.-....|..+.+.-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888877776665663332 233333444333 4555566666663222356788888888999999999999999
Q ss_pred HHhcCCCCCccHHHHHHHHH-----hcCChHHHHHHHHHH
Q 037816 553 LFLAQPDSPAPYILMANIYS-----CSGRWKERAKAIKRM 587 (648)
Q Consensus 553 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m 587 (648)
+..+...+ ..-...+..|. -..+++++.+.++.+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 98776332 22222223222 334566666655554
No 377
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=1.8e+02 Score=31.80 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 544 (648)
.+..|.+.|-+++-.-++-+| | .+..+|.-.--+.++.++|.++.++- .|...|..||..+...-.+-
T Consensus 640 A~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~ 707 (846)
T KOG2066|consen 640 ALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFI 707 (846)
T ss_pred HHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHH
Confidence 344444555555555444444 2 11222222233445666777766654 47788888887766554444
Q ss_pred HHH
Q 037816 545 MGK 547 (648)
Q Consensus 545 ~A~ 547 (648)
.++
T Consensus 708 ~~l 710 (846)
T KOG2066|consen 708 KAL 710 (846)
T ss_pred HHH
Confidence 443
No 378
>PRK13342 recombination factor protein RarA; Reviewed
Probab=68.20 E-value=1.5e+02 Score=30.45 Aligned_cols=101 Identities=8% Similarity=-0.094 Sum_probs=55.6
Q ss_pred CCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---cCCCcccHHHHH
Q 037816 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA---EELDGVSMTVIL 330 (648)
Q Consensus 254 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li 330 (648)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 34444444444433 6788887777776654321111 11222222211 112223344555
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC
Q 037816 331 VGFAQ---NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372 (648)
Q Consensus 331 ~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 372 (648)
+++.+ .++.+.|+.++..|.+.|..|....-..++.++-..|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 66555 4789999999999999998887666555555544333
No 379
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.86 E-value=1.1e+02 Score=28.99 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
+++.....|..+|.+.+|.++.++. ...| +...+..|++.+...||--.+...++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445667889999999999999998 5555 56678888889999999888888777764
No 380
>PRK10941 hypothetical protein; Provisional
Probab=67.08 E-value=24 Score=33.44 Aligned_cols=66 Identities=8% Similarity=-0.053 Sum_probs=50.0
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccH
Q 037816 499 ACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564 (648)
Q Consensus 499 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 564 (648)
+.+-.+|.+.++++.|+++.+.+ .+.|+ +.-+.--.-.|.+.|.+..|..-++.-++..|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34556778888888888888887 55554 55566666778888999999988888888888876543
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.49 E-value=30 Score=27.92 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=39.2
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568 (648)
Q Consensus 520 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 568 (648)
.+.+-|++.....-+++|.+.+|+..|+++++.+....++....|..++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3467899999999999999999999999999998776665544555443
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.27 E-value=23 Score=27.22 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC---------CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDS---------PAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+.|++..|.+.+.+........ ..+...++......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457788888887777776432211 12344567778888999999999988765
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.90 E-value=41 Score=27.21 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502 (648)
Q Consensus 442 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 502 (648)
+..+-+..+...++-|++......+++|.+.+++..|.++|+-++.+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44455666667778999999999999999999999999999999874 444444565554
No 384
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.61 E-value=30 Score=33.25 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM----PVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
|.-=.+-|.+..++..|...|.+. .-.|| .+.|+.-..+-...|++..|+.-..+++..+|....+|..-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 334456688889999999999887 12233 455666666667789999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHH
Q 037816 572 SCSGRWKERAKAIKRM 587 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m 587 (648)
....++++|..+.+..
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999888887765
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.62 E-value=1.2e+02 Score=30.53 Aligned_cols=54 Identities=11% Similarity=0.077 Sum_probs=33.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--hccCcHHHHHHHHHHhHH
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPTDV--TFLSLLHAC--SHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~--~~~g~~~~A~~~~~~~~~ 487 (648)
.+.+.+++..|.++++.+... ++++.. .+..+..+| -..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777765 444443 344444444 344566777777777655
No 386
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.41 E-value=57 Score=26.92 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHhhhcCC---HHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 492 SPRAEHYACVVDMVGRAGL---LIEARSFIERM-P-VKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.++..+--.+..++.+..+ ..+.+.++++. + -.|+ ....-.|.-++.+.+++++++++.+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4555666666677776654 44555666666 2 2332 334445666799999999999999999999998853
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.31 E-value=88 Score=30.10 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=29.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDV---TFLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
|..+-.+.|+..+|.+.++++.+. .|-.. ....++.+|....-+.....++-+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444567777777777766553 23222 22345666666555555555554443
No 388
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=62.42 E-value=1.1e+02 Score=27.00 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHhHhcCChhHHHHHhcccCC------------------CCcccHHHHHHHHHHCCCchHHHHHHHH
Q 037816 195 NALITSYFKCGSSSSGRKVFGEMRV------------------RNVITWTAVISGLVQNQLYEEGLKLFVK 247 (648)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 247 (648)
-+++-.|-+..++.+..++++.+.+ +.-..-|.....|.+.|..+.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3456666677777777777665531 1123456667777777888888777763
No 389
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.37 E-value=19 Score=23.00 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=14.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEG 454 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~ 454 (648)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455666666666666666666433
No 390
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.18 E-value=1.6e+02 Score=30.91 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=27.3
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HHcCChHHHHHHHHHHH
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKP--DVLVWQALLGAC-SIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 554 (648)
..+.+.|.+..|.++.+-+ .+.| |+.....+|..| .+..+++--+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445556666666665554 3333 344555555554 34455655555555553
No 391
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.08 E-value=71 Score=29.46 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=10.3
Q ss_pred HHHHhhhcCCHHHHHHHHHhC
Q 037816 501 VVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~ 521 (648)
++.++...|+...|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444445555555555554
No 392
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.17 E-value=2e+02 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=26.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 429 SMIAAFARHGNGFKALELYEEMKLEGVEP--TDVTFLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
.|+.-|...|+..+|...++++- ++- -...+..++.+..+.|+-...+.+++...
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLg---mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELG---MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhC---CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34555555555555555554432 221 12345555555555555554444444443
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.61 E-value=2.1e+02 Score=29.24 Aligned_cols=148 Identities=7% Similarity=-0.008 Sum_probs=66.2
Q ss_pred HHHhHhcCChhHHHHHhcccCCC----CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhh--HHHHHHHhhccC
Q 037816 198 ITSYFKCGSSSSGRKVFGEMRVR----NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT--YLSSVMACSGLQ 271 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~ 271 (648)
+...++.|+.+.+..+++.-... +..-. ..+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44455667777666666543311 11111 223333445554 34444455565554322 123344444556
Q ss_pred ChHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhccCCCccc---HHHHHHHHHHcCCHHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLC--IESALMDMYSKCGSVEDAWQIFEFAEELDGVS---MTVILVGFAQNGFEEEAMQLF 346 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~ 346 (648)
+.+.+.. +.+.|..++.. ...+.+...+..|+.+-+.-+++.-..++... ..+.+...+..|+.+ +.
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 6554333 33444433221 11223344455677666666665544432221 123333334445543 34
Q ss_pred HHHHHcCCCcCH
Q 037816 347 VKMVKAGIEIDP 358 (648)
Q Consensus 347 ~~m~~~~~~p~~ 358 (648)
+.+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 445556655553
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=58.42 E-value=23 Score=25.91 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=6.4
Q ss_pred CcHHHHHHHHHHhHH
Q 037816 473 GLVNKGMEFLKSMTE 487 (648)
Q Consensus 473 g~~~~A~~~~~~~~~ 487 (648)
.+.++|+..+....+
T Consensus 20 ~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 20 NETQQALQKWRKALE 34 (80)
T ss_pred chHHHHHHHHHHHHh
Confidence 334444444444443
No 395
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.34 E-value=77 Score=23.84 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHH
Q 037816 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342 (648)
Q Consensus 304 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 342 (648)
..|+.+.|.++++.++ +.+..|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 7777777777777776665444
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.25 E-value=1.1e+02 Score=25.70 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=31.3
Q ss_pred CcccHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhcc
Q 037816 322 DGVSMTVILVGFAQNGF-EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD 371 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 371 (648)
+...|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44456666666655444 334556666676666677777777777766654
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.96 E-value=97 Score=29.26 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHCCCchHHHHHHHHHHh--CCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK-- 304 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 304 (648)
|.+++..++|.+++...-+--+ ..++|...-. -|-.|++.+.+..+.++-..-++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5666677777776665444422 1233332222 223344555555555554444433222223334444444433
Q ss_pred ---cCCHHHHHHHH
Q 037816 305 ---CGSVEDAWQIF 315 (648)
Q Consensus 305 ---~~~~~~A~~~~ 315 (648)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666554
No 398
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.73 E-value=1.8e+02 Score=27.91 Aligned_cols=115 Identities=10% Similarity=-0.096 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG-------LLIEARSFIERMPVKPDVLVWQALLGACSI----HGD 542 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 542 (648)
+..+|..+|+++.+. |..+.......+...|...+ +...|...+.++-..-+......+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666553 44333222333333333321 223566666665212244444444444432 237
Q ss_pred hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCC
Q 037816 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG---------------RWKERAKAIKRMKEMGV 592 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 592 (648)
.++|...|+++.+.+. ......+. .+...| +...|...+......|.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 7788888888777666 34444554 444444 77778888887777664
No 399
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.49 E-value=1.9e+02 Score=29.54 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=51.9
Q ss_pred HHHhHhcCChhHHHHHhcccCCCCcc--cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh---hHHHHHHHhhccCC
Q 037816 198 ITSYFKCGSSSSGRKVFGEMRVRNVI--TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL---TYLSSVMACSGLQA 272 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~ 272 (648)
+...+..|+.+-+.-+++.-..++.. .....+...+..|+.+.+..+++. |...+.. .-.+.+...+..|+
T Consensus 39 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~ 114 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKK 114 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCC
Confidence 33444555555444444432222211 112234555677777665555543 2211110 01123333444555
Q ss_pred hHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhcc
Q 037816 273 LCEGRQIHGILWKLALQSDLCI--ESALMDMYSKCGSVEDAWQIFEFAE 319 (648)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~ 319 (648)
. ++.+.+.+.|..++... ..+.+...+..|+.+-+.-+++.-.
T Consensus 115 ~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~ 159 (413)
T PHA02875 115 L----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159 (413)
T ss_pred H----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence 4 34455556666554321 1234455556777766666665433
No 400
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.32 E-value=63 Score=24.28 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHH
Q 037816 176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242 (648)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 242 (648)
..+++...+.|+ -+......+-.+-...|+.+.|.+++..++ +....|..++.++...|.-+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 344555555552 222233333322235577788888888877 77777777787777777655443
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.66 E-value=96 Score=24.41 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
..++|..|.+.+...+. -...+--+-+..+...|++++|...=.....||..+|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 44555555555555543 22333334444566677777773333333345555555443 3466666666666666655
Q ss_pred cC
Q 037816 352 AG 353 (648)
Q Consensus 352 ~~ 353 (648)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 402
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=55.79 E-value=2.3e+02 Score=28.43 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=31.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhH
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~ 486 (648)
+..+.+.|-+..|+++.+-+...+..-|+.....+|+.| .+.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 345566666666666666666654322444445555554 45556665555555543
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.64 E-value=23 Score=32.09 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=39.1
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..+.+|.+.|-+++.+++++-|.....|..++..-.+.|+++.|.+.+++..+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345677777777777777777777777777777777777777777777777664
No 404
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.39 E-value=73 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 545 MGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 545 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
.+.++|+.+... +..-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677788877653 355567788888888888888888888875
No 405
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.35 E-value=1.8e+02 Score=27.21 Aligned_cols=183 Identities=10% Similarity=0.051 Sum_probs=121.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHhccCChhHHHHHHHHHHH---hCCC--CchhHHHHHHHHHHhC
Q 037816 335 QNGFEEEAMQLFVKMVKAGIEI---DPNMVSAVLGVFGVDTSLGLGKQIHSLIIK---SDFT--SNPFVNNGLINMYSKC 406 (648)
Q Consensus 335 ~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~li~~~~~~ 406 (648)
+..++++|+.-|++..+..-.- .-.....++....+.+++++..+.+.++.. ..+. -+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4568999999999998753222 234556788889999999999998887753 2222 2345677777777777
Q ss_pred CCHHHHHHHHhhcC-----CCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC----CCH-------HHHHHHH
Q 037816 407 GDLEDSIKVFSRMA-----PRNSV----SWNSMIAAFARHGNGFKALELYEEMKLEGVE----PTD-------VTFLSLL 466 (648)
Q Consensus 407 g~~~~A~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~----p~~-------~~~~~ll 466 (648)
.+.+--.++|+.-. ..|.. |-.-|...|...+.+.+..++++++...--. -|. ..|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77666665554322 12222 3345677788888899999999888764211 111 2466667
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH----HHhhhcCCHHHHHHH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV----DMVGRAGLLIEARSF 517 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~ 517 (648)
..|..+.+-..-..+|++......--|.+.....+- .+..+.|++++|..-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 778788887788888887765445566666555443 235577888887643
No 406
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.19 E-value=54 Score=27.46 Aligned_cols=64 Identities=20% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCCh
Q 037816 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577 (648)
Q Consensus 511 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 577 (648)
-+.|.++.+-|| ...............|++..|.++.+.++..+|++..+-...+++|...|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456677777774 2334444556677899999999999999999999998888888888766543
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.87 E-value=58 Score=29.06 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 558 (648)
...|++..|..++.++...|+.++|.+..+++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4456666676666677777777777777777666666
No 408
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.59 E-value=3.3e+02 Score=30.84 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..|...+-.+.+.|+.++|+.++-...+
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 4566666667788888888887766554
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.35 E-value=51 Score=29.43 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
..|++.+|..++..+...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555555555555555554
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.24 E-value=75 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888889999999999888876
No 411
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.02 E-value=2.4e+02 Score=27.56 Aligned_cols=110 Identities=18% Similarity=-0.000 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhHHhcCC---CCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816 475 VNKGMEFLKSMTEVHRI---SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (648)
.+.|.+.|+.......- ..++.....+....++.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887763111 346667777778888888877666666666555677778888888888888888888888
Q ss_pred HHHhcC-CCCCccHHHHHHHHHhcCCh--HHHHHHHH
Q 037816 552 KLFLAQ-PDSPAPYILMANIYSCSGRW--KERAKAIK 585 (648)
Q Consensus 552 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 585 (648)
.++... -.....+..+. .+...+.. +.+.+++.
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHH
Confidence 888743 22233444443 33323332 55555543
No 412
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.82 E-value=3.1e+02 Score=28.54 Aligned_cols=159 Identities=11% Similarity=0.099 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHH
Q 037816 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAA 433 (648)
Q Consensus 357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 433 (648)
|.....+++..+.......-++.+..++...| -+...|..++.+|... ..+.-..+|+++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444444444444444444444444444433 2333444444444444 33334444443322 222333333333
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 434 FARHGNGFKALELYEEMKLEGVEP--T---DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p--~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
|-+ ++.+.+..+|.+...+=++- + ...|..+... -..+.+...++..++....|...-...+.-+-..|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 333 44455555555544331110 0 0122222211 12345555555555555444444444555555556666
Q ss_pred CCHHHHHHHHHhC
Q 037816 509 GLLIEARSFIERM 521 (648)
Q Consensus 509 g~~~~A~~~~~~~ 521 (648)
.++.+|++++..+
T Consensus 219 eN~~eai~Ilk~i 231 (711)
T COG1747 219 ENWTEAIRILKHI 231 (711)
T ss_pred cCHHHHHHHHHHH
Confidence 6666666666644
No 413
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.81 E-value=86 Score=32.83 Aligned_cols=133 Identities=12% Similarity=0.050 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh-hcCCHHHHHHHHHhC-CCCCC--HHH
Q 037816 456 EPTDVTFLSLLHACSHV--GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG-RAGLLIEARSFIERM-PVKPD--VLV 529 (648)
Q Consensus 456 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p~--~~~ 529 (648)
-|+..+..+++.-.... ...+-+-.++..|.. -..|-=...| +...|. -.|+...|...+... ...|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 36666666555443322 123334445554433 2333211222 233444 468999999988877 44442 334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
...|.+...+.|-...|-.++.+.+.+....|-++..++++|....+++.|++.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55667777888889999999999999998889999999999999999999999999987753
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.66 E-value=2.2e+02 Score=26.87 Aligned_cols=158 Identities=12% Similarity=0.128 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHH----HHHcCCCcCHHHHHHHHHHHhccCChh-HHH
Q 037816 304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK----MVKAGIEIDPNMVSAVLGVFGVDTSLG-LGK 378 (648)
Q Consensus 304 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 378 (648)
+++++++|.+++..- ...+.+.|+..-|.++-.- ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345566666654332 2234555555544443333 333466666666566655554433211 122
Q ss_pred HHHHHHHH---hC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037816 379 QIHSLIIK---SD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453 (648)
Q Consensus 379 ~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 453 (648)
.+.+.+++ .| -.-++.....+...|.+.|++.+|+..|-.-..++...+..++..... .
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~----------------~ 134 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST----------------K 134 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH----------------h
Confidence 33333332 22 224677888899999999999999887754433333222222222222 2
Q ss_pred CCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 454 GVEPTDVTF-LSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 454 ~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
|.+.+...| ...+--|...++...|...++...+.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222222222 12223355667788888877777653
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.61 E-value=1.3e+02 Score=28.35 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+=.++.+.++++.|....++.+..+|.++.-..--+-+|...|.+.-|++-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3356788899999999999999999999988888899999999999999988887664
No 416
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.15 E-value=1.9e+02 Score=30.79 Aligned_cols=85 Identities=12% Similarity=0.049 Sum_probs=59.6
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 505 VGRAGLLIEARSFIERM-PVKP-D------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~-~~~p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
..+..++..+.+.|..- ..-| | ....+.+.-+|....+.+.|.++++++.+.+|.++-.-..+..+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34556677777766532 2111 1 22345666677788888888888888888888887777777778888888
Q ss_pred hHHHHHHHHHHHh
Q 037816 577 WKERAKAIKRMKE 589 (648)
Q Consensus 577 ~~~A~~~~~~m~~ 589 (648)
-++|+..+.+...
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888888777654
No 417
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.69 E-value=35 Score=32.43 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=55.3
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQA-LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
+..|+..|...+....+.|.+.+.-.++.+. ...| |+..|-. .-.-+...++++.+..++.+.++.+|++|.+|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4446666766666666677777777777776 3333 4555533 22336678999999999999999999999887654
Q ss_pred HH
Q 037816 568 AN 569 (648)
Q Consensus 568 ~~ 569 (648)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 418
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.33 E-value=3.1e+02 Score=27.85 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCChhHHHHhhccCC--C---------CCcccHHHHHHHHHhcCCchHHHHHHHHHH
Q 037816 90 VIWNSLLSFYLKCDQMRNAVKLFDDMP--M---------RDTVSWNTMVSGFLRNGEFDMGFGFFKRSL 147 (648)
Q Consensus 90 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~---------~~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 147 (648)
.+...|++..+-.||+..|+++++.+. + -.+.+|..+.-+|...+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888999999999998885 1 156678888889999999999999998765
No 419
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=47.73 E-value=37 Score=30.83 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=35.5
Q ss_pred hhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 505 VGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
..+.|+.+.|.+++.+. ..-|+ ...|-.+...-.+.|+++.|.+.|++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666666666666 33343 45566666666667777777777777777666543
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.41 E-value=2.3e+02 Score=26.10 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 538 (648)
++.++...|+.+.|..+++... .++ +......++.. ..+|.+.+|..+-+.....-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~----p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG----PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC----CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 4444444556666666555542 111 22222222222 444566666665555521111234444444444
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.82 E-value=79 Score=24.17 Aligned_cols=24 Identities=21% Similarity=0.039 Sum_probs=17.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
+...+...|+.++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344566778888888888888754
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.51 E-value=2.8e+02 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHhccCcHHHHHHHHH
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVT-------FLSLLHACSHVGLVNKGMEFLK 483 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~g~~~~A~~~~~ 483 (648)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|++..-.+...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34445677889999999999988887766554 4456666777776655444433
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.41 E-value=1.2e+02 Score=30.63 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=15.6
Q ss_pred CccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 561 PAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 561 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
..+|..++-+|.=.+||.+|++.|...
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666555554
No 424
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.30 E-value=5.1e+02 Score=29.44 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 037816 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302 (648)
Q Consensus 223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (648)
..|..|+..|...|..++|++++.+.....-.-|.. ..+.-+.+.+.+.+.+ .++..+.-.... +
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~-~~~~~Li~~y~~-w 569 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLG-AENLDLILEYAD-W 569 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhc-ccchhHHHHHhh-h
Confidence 368899999999999999999999986521101110 1111122333333333 222111111111 1
Q ss_pred HhcCCHHHHHHHHHhccCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 037816 303 SKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369 (648)
Q Consensus 303 ~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 369 (648)
.-..+.+...++|..-... ....-. -+-.|+.....+-+..+++.+....-.++....+.++..|+
T Consensus 570 vl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 570 VLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2234555566666541110 111111 23456777788888888888887766667777777776664
No 425
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=44.93 E-value=3e+02 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=13.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
.......||+.|+.+.|.+.+.+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344455566666666665555443
No 426
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.56 E-value=2.8e+02 Score=26.31 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=21.3
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCChhhH
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 260 (648)
.+-..+.+++++|+..+.+....|+.-|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 44455667777777777777777766655443
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.43 E-value=38 Score=32.26 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=32.2
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL 163 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll 163 (648)
-||.-|..-.+.||.++|+.++++..+.|+.--.. +|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~-tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARS-TFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHH-HHHHHh
Confidence 47789999999999999999999999999754444 554433
No 428
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.93 E-value=3.5e+02 Score=28.48 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcC
Q 037816 397 NGLINMYSKCGDLEDSIKVFSRMA 420 (648)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~ 420 (648)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346677888888888888888876
No 429
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.27 E-value=3.3e+02 Score=26.72 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh---cCCHHHHHH
Q 037816 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR---AGLLIEARS 516 (648)
Q Consensus 440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 516 (648)
.+.-+.++++.++.+ +-+......++..+.+..+.+...+.++++... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 345566777777663 235556666777777777777777777777763 33366666666655433 123444444
Q ss_pred HHHhC---------CC------CCC--HH---HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816 517 FIERM---------PV------KPD--VL---VWQALLGACSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 517 ~~~~~---------~~------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 557 (648)
+|.+. +. .++ .. .+..+...+...|..+.|+.+++.+++.+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44433 11 011 11 22222333467899999999999999876
No 430
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=43.09 E-value=7.6 Score=18.55 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=9.3
Q ss_pred cchhhhccccCC
Q 037816 2 KSKWVFLKLNSN 13 (648)
Q Consensus 2 ~~~~~~~~~~~~ 13 (648)
..||+|+..|.+
T Consensus 5 ~~~wlFEtqplD 16 (16)
T PF08043_consen 5 TTRWLFETQPLD 16 (16)
T ss_pred eeEEEeecccCC
Confidence 468999988764
No 431
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.01 E-value=36 Score=37.23 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=49.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 544 (648)
+|..+.+.|..+-|+.+.+.-..++ .....+|+++.|++..++.+ |..+|..|+.....+|+..
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchH
Confidence 4445566677766666665554432 23456777777777777663 5677777877777777777
Q ss_pred HHHHHHHHHHh
Q 037816 545 MGKYAAEKLFL 555 (648)
Q Consensus 545 ~A~~~~~~~~~ 555 (648)
-|+..|++...
T Consensus 690 IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 690 IAEMCYQRTKN 700 (1202)
T ss_pred HHHHHHHHhhh
Confidence 77777776543
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.93 E-value=39 Score=32.21 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH
Q 037816 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261 (648)
Q Consensus 224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 261 (648)
-||..|....+.||+++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46788888888888888888888888888766555553
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.71 E-value=2.8e+02 Score=26.71 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 037816 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386 (648)
Q Consensus 343 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 386 (648)
.++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666666677666666666666666666666666666654
No 434
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=42.33 E-value=1.8e+02 Score=23.76 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816 546 GKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 546 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
..++|+.+... +..-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45567766543 34455677788888888899999888876
No 435
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.99 E-value=3.3e+02 Score=26.25 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCChHHH
Q 037816 426 SWNSMIAAFARHGNGFKA 443 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A 443 (648)
.|..|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 566677777777665544
No 436
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.15 E-value=3.9e+02 Score=26.93 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 294 IESALMDMYSKCGSVEDAWQIFEFAEE------LDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 294 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
.+.-+...|..+|+++.|.+.|.+..+ ..+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345677788888999998888888654 1233455566666677788777777666654
No 437
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.14 E-value=2.9e+02 Score=25.59 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=71.9
Q ss_pred HHHhCCCHHHHHHHHhhcC--CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhccCcHHH
Q 037816 402 MYSKCGDLEDSIKVFSRMA--PRNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF-LSLLHACSHVGLVNK 477 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~ 477 (648)
-|....+++.|...|.+.. .|++ .-|..-+.++.+.++++.+..--.+.++ +.||..-- ..+..+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3556677888888887664 4555 4456667778888888888877777666 55765543 334455677788889
Q ss_pred HHHHHHHhHHh---cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 478 GMEFLKSMTEV---HRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 478 A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
|+..+++.... ..+++.......|..+--..=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 98888887442 123334444444444333333334444444443
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.93 E-value=1.6e+02 Score=25.96 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC-CCCCCHHHH---------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816 511 LIEARSFIERM-PVKPDVLVW---------QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 580 (648)
++.|+.+|+.+ ...|-+.+. ...+..|.+.|.+++|.+++++... +|++...-.-|..+-.....+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~ 163 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPV 163 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHH
Q ss_pred HHHH
Q 037816 581 AKAI 584 (648)
Q Consensus 581 ~~~~ 584 (648)
++.|
T Consensus 164 lqnF 167 (200)
T cd00280 164 LQNF 167 (200)
T ss_pred HHhc
No 439
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.56 E-value=1e+02 Score=20.06 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467 (648)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 467 (648)
.+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777777766666554
No 440
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.34 E-value=46 Score=31.57 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=25.6
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 507 RAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
+.|+.++|..+|+.. ...|+ +....-+.......++.-+|-++|-+++...|.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 455555555555544 33333 22222222223333455555555555555555554
No 441
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.94 E-value=3.3e+02 Score=25.75 Aligned_cols=83 Identities=10% Similarity=0.103 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 037816 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268 (648)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 268 (648)
.++.....+...|.+.|++.+|+..|-.-..++...+-.++......|...++--++-+ . +--+.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R--------------a-VL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR--------------A-VLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH--------------H-HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH--------------H-HHHHH
Confidence 46677888888888999988888777655555444443344444444444443222111 1 12234
Q ss_pred ccCChHHHHHHHHHHHHh
Q 037816 269 GLQALCEGRQIHGILWKL 286 (648)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~ 286 (648)
..+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 456777777776666544
No 442
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.91 E-value=87 Score=22.10 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
+....++.++..+++..-.++++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445566666666666666777777777777663 455555555554444
No 443
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.77 E-value=90 Score=18.87 Aligned_cols=16 Identities=6% Similarity=-0.199 Sum_probs=7.2
Q ss_pred HHHHHHcCChHHHHHH
Q 037816 534 LGACSIHGDSEMGKYA 549 (648)
Q Consensus 534 ~~~~~~~g~~~~A~~~ 549 (648)
.-.+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334445555555555
No 444
>PRK09857 putative transposase; Provisional
Probab=38.56 E-value=1.7e+02 Score=28.28 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 595 (648)
+..++......++.++-.++++.+.+..|........++.-+...|.-++++++.++|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555545667776667777777666666666666778888888888889999999999987654
No 445
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.52 E-value=3.2e+02 Score=25.09 Aligned_cols=97 Identities=12% Similarity=0.036 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChhHH--HHHHHHhhhcCCHHHHHHHHHhC---CCCCC
Q 037816 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP---RAEHY--ACVVDMVGRAGLLIEARSFIERM---PVKPD 526 (648)
Q Consensus 455 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~---~~~p~ 526 (648)
+.+...-++.|+--|.-...+.+|-..|..-. ++.| +...+ ..-|......|+.++|++...+. -+..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 44555555555544444444444444444332 4444 22222 23455566777777777777766 12223
Q ss_pred HHHHHHHH--HH--HHHcCChHHHHHHHHHHH
Q 037816 527 VLVWQALL--GA--CSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 527 ~~~~~~l~--~~--~~~~g~~~~A~~~~~~~~ 554 (648)
...+-.|. +. ..+.|..++|+++.+.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222221 21 345666666666666533
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.28 E-value=52 Score=22.89 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 565 ILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 565 ~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..++.+|...|++++|.++++.+.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556666677777777777666543
No 447
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.22 E-value=5.7e+02 Score=27.93 Aligned_cols=50 Identities=18% Similarity=-0.030 Sum_probs=32.1
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCC-------hhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISPR-------AEHYACVVDMVGRAGLLIEARSFIE 519 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (648)
+-.+++..|...++.+.+...-.|+ +.++....-.+-..|+++.|+..|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4567898999999988764322222 2222222233446699999999997
No 448
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.43 E-value=1.8e+02 Score=27.18 Aligned_cols=51 Identities=8% Similarity=-0.119 Sum_probs=23.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC------CCccHHHHHHHHHhcCChHHHHHHH
Q 037816 534 LGACSIHGDSEMGKYAAEKLFLAQPD------SPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
...|...|++++|.++++.+...-.. ...+...+..++.+.|+.++.+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34455555555555555555322111 1223344445555555555555443
No 449
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=37.41 E-value=3.9e+02 Score=25.78 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=12.5
Q ss_pred cHHHHHHHHHHcCCHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAM 343 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~ 343 (648)
.|..|+.+++..|+.+-.+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4667777777777665443
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.32 E-value=2.3e+02 Score=23.18 Aligned_cols=43 Identities=9% Similarity=-0.166 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHH
Q 037816 138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180 (648)
Q Consensus 138 ~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~ 180 (648)
.+.++|..|...|+.......|..-...+...|+++.|..++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6667777777766655555445555555555555555555544
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.27 E-value=3.1e+02 Score=26.45 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHH
Q 037816 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285 (648)
Q Consensus 243 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 285 (648)
++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4556666666666666666666666666666666666666543
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.89 E-value=1.5e+02 Score=31.89 Aligned_cols=243 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChH----------HHHH
Q 037816 108 AVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL----------VSKM 177 (648)
Q Consensus 108 A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~----------~a~~ 177 (648)
|....+..+......+..++.+.. .|+...++.....+..... +-..+...+...|-++ ..++
T Consensus 286 a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~~~~~w------~aahladLl~~~g~L~~~~~~~~~~~~lre 358 (566)
T PF07575_consen 286 AQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSLFDDWW------FAAHLADLLEHKGLLEDSEQEDFGGSSLRE 358 (566)
T ss_dssp HHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH--HHH------HHHHHHHHHHHTTSS--SS-----TS-HHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHHccchh------HHHHHHHHHHhcCccccccccccccccHHH
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhHhcCC--hhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC
Q 037816 178 IHCLVYLCGYEEEVTVGNALITSYFKCGS--SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255 (648)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 255 (648)
.+-.-....+-.+...|..-+..+..+++ ......++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-+.
T Consensus 359 ~~ll~YA~~L~s~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~- 437 (566)
T PF07575_consen 359 YLLLEYASSLMSHHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK- 437 (566)
T ss_dssp HHHHHHHHHHHT-TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-
Q ss_pred ChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHH
Q 037816 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQ 335 (648)
Q Consensus 256 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 335 (648)
..-|...+..+.+.|+...+..+...+.+.....+......+++......-...-+..+-...+ ..-..+
T Consensus 438 -~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~~~~~~L~fla~yre---------F~~~~~ 507 (566)
T PF07575_consen 438 -EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPMLLSQRLSFLAKYRE---------FYELYD 507 (566)
T ss_dssp -HHHHHHHHHHHH-------------------------------------------------------------------
T ss_pred -CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchhhhhhhhHHHHHHHH---------HHHHHh
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF 368 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 368 (648)
.+++.+|.+.+-.+......|.......+..+.
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ---------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
No 453
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.62 E-value=1.2e+02 Score=19.72 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=19.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037816 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366 (648)
Q Consensus 334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 366 (648)
.+.|-..++...+++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666655555555443
No 454
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.97 E-value=5.2e+02 Score=26.84 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=96.3
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH--HHHHhhcC----CC-----------ChhHHHHHHH
Q 037816 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS--IKVFSRMA----PR-----------NSVSWNSMIA 432 (648)
Q Consensus 370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~~~----~~-----------~~~~~~~l~~ 432 (648)
..+.++...++++.+...|....+..++.-+..|.+.|....- ++.+..+. .+ +...+....-
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 3445666666666666666666666666666666666554321 11111111 11 1122222223
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHH-----HHHHHHHhccCcHHHHHHHHHH---hHHhcCCCCC--hhHHHHHH
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPTDVTF-----LSLLHACSHVGLVNKGMEFLKS---MTEVHRISPR--AEHYACVV 502 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~---~~~~~~~~~~--~~~~~~l~ 502 (648)
.|.....+..|+++...+..+ +.|-...+ ......+......++|+.++.- +.......|+ ...-+
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~n--- 184 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPAN--- 184 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchh---
Confidence 334445566666666555443 12211111 1112233444455566554443 3322122221 11111
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816 503 DMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 582 (648)
...+.+....|.+-+-.. .|-......-++++....+...+..-.+-+.....+.+.....-...+.-.|++..|.+
T Consensus 185 -n~~kt~s~~aAe~s~~~a--~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~K 261 (696)
T KOG2471|consen 185 -NLLKTLSPSAAERSFSTA--DLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMK 261 (696)
T ss_pred -hhcccCCcchhcccchhh--ccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHH
Confidence 122333333333322222 11122222233445555555555555555544444555666667778888899999988
Q ss_pred HHHHH
Q 037816 583 AIKRM 587 (648)
Q Consensus 583 ~~~~m 587 (648)
++...
T Consensus 262 lL~~s 266 (696)
T KOG2471|consen 262 LLLVS 266 (696)
T ss_pred HHHhc
Confidence 76553
No 455
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=35.97 E-value=4.3e+02 Score=25.93 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHH
Q 037816 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMGKYA 549 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~ 549 (648)
.+.-+.+++++.+. .+.+......+++.+.+..+.++..+-++++ ...| +...|...+...... -.++.....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 45667888888874 3457788888899999999999988888888 3334 577888888776542 356677777
Q ss_pred HHHHHhcC-----------CCCC-------ccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 550 AEKLFLAQ-----------PDSP-------APYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 550 ~~~~~~~~-----------p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
|.+.++.- ++.+ .++..+...+..+|-.+.|+.+++.+.+.++.
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 77665311 0111 24555666677899999999999999998863
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.56 E-value=7.8e+02 Score=28.81 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=59.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERMP-VKPDVLVWQALLGA 536 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~ 536 (648)
|...++.+-+.+-.+.+.++-..+.+ .++++ ..+++.+.+.....|.+-+|...+-+-+ ..-...+.+.++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44555666666666666666666655 23332 3345566666666677766666554431 11113344555555
Q ss_pred HHHcCChH------------HHHH-HHHHHHhcCCCCCccHH-HHHHHHHhcCChHHHHHH
Q 037816 537 CSIHGDSE------------MGKY-AAEKLFLAQPDSPAPYI-LMANIYSCSGRWKERAKA 583 (648)
Q Consensus 537 ~~~~g~~~------------~A~~-~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~ 583 (648)
++..|.++ +... +++.+-+..|-...-|+ .|--.+...++|.+|-.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 55555433 2222 33333344444333333 333334455666665543
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.54 E-value=1.8e+02 Score=24.55 Aligned_cols=62 Identities=13% Similarity=-0.013 Sum_probs=38.8
Q ss_pred HHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 037816 142 FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205 (648)
Q Consensus 142 ~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 205 (648)
+.+.+++.|++++.. -..++..+...++.-.|..+++.+.+.+...+..|--.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q--R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ--RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 445556667655553 55677777777666888888888888776555444333345555554
No 458
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.18 E-value=88 Score=19.24 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.+|..++.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888888877654
No 459
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.08 E-value=7.7e+02 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHhhcCC
Q 037816 396 NNGLINMYSKCG--DLEDSIKVFSRMAP 421 (648)
Q Consensus 396 ~~~li~~~~~~g--~~~~A~~~~~~~~~ 421 (648)
...++.+|.+.+ ++++|+....++.+
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 344555666655 56666666655553
No 460
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.81 E-value=5.2e+02 Score=26.49 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=46.5
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 206 (648)
|.++...| ..++..+-...... ++.. .+.....++....+......+.+.+. .++..+......++.+.+.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~e-v~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPG-RVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChh-HHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 55666666 45566555555332 2222 33333333332322222333333332 3444456666666666666
Q ss_pred hhHHHHHhcccCCCCcccHHHHHHHHHH
Q 037816 207 SSSGRKVFGEMRVRNVITWTAVISGLVQ 234 (648)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~li~~~~~ 234 (648)
.+....+...+..++.......+.++..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 5555555555554554444444444444
No 461
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=34.79 E-value=2e+02 Score=21.80 Aligned_cols=53 Identities=23% Similarity=0.125 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCccHHHHHHHHHhcCChH
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCSGRWK 578 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 578 (648)
|....-.+...+...|+++.|++.+-.+++.++. +...-..++.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4555666677778888888888888888776654 3566667777777777644
No 462
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.72 E-value=42 Score=23.33 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
|....-.+|.+|...|++++|.++++++
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333344455555555555555555443
No 463
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.62 E-value=2e+02 Score=21.65 Aligned_cols=41 Identities=10% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 037816 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 419 (648)
++|+.....|+..|+.+|..+++.+.-.=-++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 56666666666677777766666655555555555555554
No 464
>PF14044 NETI: NETI protein
Probab=34.36 E-value=27 Score=23.47 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCcccCCC
Q 037816 626 VLAELLRLMIDEGYVPNKR 644 (648)
Q Consensus 626 ~~~~~~~~m~~~g~~p~~~ 644 (648)
.+.+.+.+|.+.||.|=.+
T Consensus 9 TI~~CL~RM~~eGY~PvrR 27 (57)
T PF14044_consen 9 TISDCLARMKKEGYMPVRR 27 (57)
T ss_pred cHHHHHHHHHHcCCCceee
Confidence 3568999999999999655
No 465
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=34.26 E-value=5.6e+02 Score=26.72 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCC--CC-CcccHHHHHHH-HHhcCCchHHHHHHHHHHHcCCCCCcH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MR-DTVSWNTMVSG-FLRNGEFDMGFGFFKRSLELGFYQLDQ 156 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~y~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~ 156 (648)
+.|+..|...+..+-+.+.+.+...+|..|. .| ++..|-.-..- |-.+-+++.|..+|.+-.+-+ |+.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n--pdsp 174 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN--PDSP 174 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC--CCCh
Confidence 5677777777777777776777777777765 22 33333322222 222333667777776655543 5555
No 466
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.13 E-value=7.5e+02 Score=28.19 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 511 (648)
++-.+.|.++.+---..|..++..-...+...|.+..+.+++.++.+..+-.++...|..+++.+...|.-
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 33444444444321123444444445555667777788888877777656667777777777766666643
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.65 E-value=6.1e+02 Score=26.98 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=33.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHhH
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~ 486 (648)
|..+.+.|-+..|+++.+-+.+....-|+.....+|+.| .+..+++-.+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556677777777777666654333555556666665 45556666666666553
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.56 E-value=1.2e+02 Score=28.35 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=6.0
Q ss_pred hccCcHHHHHHHHHHh
Q 037816 470 SHVGLVNKGMEFLKSM 485 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~ 485 (648)
...|++++|.++|+.+
T Consensus 189 ~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 189 FRLGDYDKALKLLEPA 204 (247)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 3333333333333333
No 469
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=33.16 E-value=2.2e+02 Score=29.89 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHHHhHhcCChhHHHHHhcccCCC--Cccc---HHHHHHHHHHCCCchHHHHHHHHHHh
Q 037816 195 NALITSYFKCGSSSSGRKVFGEMRVR--NVIT---WTAVISGLVQNQLYEEGLKLFVKMHL 250 (648)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 250 (648)
..++.-|.+.+++++|..++..|.-. .... .+.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45777899999999999999888632 2223 33445555555444555555555544
No 470
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.03 E-value=2.5e+02 Score=22.26 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=49.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450 (648)
Q Consensus 371 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 450 (648)
....++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3346677777777766553 222222333445677888888854444455677777765533 4677777777777777
Q ss_pred HHcCCCCCHHHH
Q 037816 451 KLEGVEPTDVTF 462 (648)
Q Consensus 451 ~~~~~~p~~~~~ 462 (648)
..+| .|....|
T Consensus 96 a~~g-~~~~q~F 106 (116)
T PF09477_consen 96 ASSG-SPELQAF 106 (116)
T ss_dssp CT-S-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 3433333
No 471
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.68 E-value=4.5e+02 Score=25.18 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 455 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
-.++..+...++..++..+++..-.++++......+...|...|..+++.....|+..-...+.++-
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 4566666667777777777777777777766552223346677777777777777777666666654
No 472
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=32.44 E-value=99 Score=31.58 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=61.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhc
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL-LHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRA 508 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 508 (648)
+..+...+.++.|..++.+.++. .||...|-.. ..++.+.+++..|+.=+.++.+. .| ....|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 34455667788888888888773 4655544332 36677777887777777766653 23 222333333344445
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 037816 509 GLLIEARSFIERM-PVKPDVLVWQALLGACSI 539 (648)
Q Consensus 509 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 539 (648)
+++.+|...|+.. .+.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5666677666666 566766665555555533
No 473
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.28 E-value=3.7e+02 Score=23.99 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-----------CCC----CccHHHHHHHHHhcCChHHHHHHHH
Q 037816 531 QALLGACSIHGDSEMGKYAAEKLFLAQ-----------PDS----PAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------p~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
-+++-.|.+.-++.++..+++.+.++. |.+ -.+.+..+..+.++|..+-|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 345666777788888888888876532 222 2356677888999999999998887
No 474
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.24 E-value=8.5e+02 Score=28.20 Aligned_cols=183 Identities=11% Similarity=0.011 Sum_probs=97.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Q 037816 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG 369 (648)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 369 (648)
+|..+-...+..+...+.. ....+...+.++|...-...+.++.+.+..+. +.... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 3444444444444433211 11233444555666555555666655544322 11121 2355555566666666
Q ss_pred ccCChhH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH-HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 037816 370 VDTSLGL-GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK-VFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447 (648)
Q Consensus 370 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 447 (648)
..+..+. +...+..+.+ .+++.+-.+.+.++...|..+.+.. +...+..++...-...+.++...+. .++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6554332 2233333332 3456777777788888777655433 3344445565555666777777665 4555666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 448 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
-.+.+ .|+...-...+.++.+.+....+...+..+.+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55553 46666666677777665434456666666654
No 475
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=32.01 E-value=55 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.447 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhcCcccC
Q 037816 621 DTIHGVLAELLRLMIDEGYVPN 642 (648)
Q Consensus 621 ~~~~~~~~~~~~~m~~~g~~p~ 642 (648)
-++.+.+++..++++..|+.||
T Consensus 8 i~il~~ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHhcCCCCC
Confidence 4567788899999999999998
No 476
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.76 E-value=72 Score=26.29 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 037816 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA 266 (648)
Q Consensus 232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 266 (648)
....|.-..|..+|+.|.+.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34557778899999999999988875 4455544
No 477
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=31.55 E-value=54 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhcCcccCCCC
Q 037816 622 TIHGVLAELLRLMIDEGYVPNKRF 645 (648)
Q Consensus 622 ~~~~~~~~~~~~m~~~g~~p~~~~ 645 (648)
.++..=+.+..+|..+||+||+..
T Consensus 49 ~L~~yH~lv~~EM~~RGY~~~~~W 72 (120)
T TIGR02328 49 KLFAYHLLVMEEMATRGYHVSKQW 72 (120)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhh
Confidence 344445689999999999999854
No 478
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.38 E-value=1.2e+02 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKL 452 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~ 452 (648)
...++-.|....+++..+++.+.+..
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHh
Confidence 33444455555555555555555554
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.91 E-value=2.1e+02 Score=30.70 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=33.5
Q ss_pred HHHHHhHhcCChhHHHHHhcccCCC------CcccHHHHHHHHHHCCCch------HHHHHHHHHHhCCCCCChhhHHHH
Q 037816 196 ALITSYFKCGSSSSGRKVFGEMRVR------NVITWTAVISGLVQNQLYE------EGLKLFVKMHLGLINPNSLTYLSS 263 (648)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~t~~~l 263 (648)
+|+.+|...|++-.+.++++..... =...||..|+.+.+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 4555555555555555555544311 1234566666666666543 2233333322 44555566555
Q ss_pred HHHh
Q 037816 264 VMAC 267 (648)
Q Consensus 264 l~~~ 267 (648)
+.+.
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5443
No 480
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.89 E-value=6.3e+02 Score=26.27 Aligned_cols=83 Identities=10% Similarity=-0.036 Sum_probs=42.1
Q ss_pred CCCchHHHHHHHHHHh-CCCCCCh-----hhHHHHHHHhhccC-ChHHHHHHHHHHHHh--cCC-CchhHHHHHHHHHHh
Q 037816 235 NQLYEEGLKLFVKMHL-GLINPNS-----LTYLSSVMACSGLQ-ALCEGRQIHGILWKL--ALQ-SDLCIESALMDMYSK 304 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~-~~~~p~~-----~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~ 304 (648)
..+++.|..-++..-. ...-|+- .++..+...+.... .+..++.+++...+. +.+ ..-.....|+....-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 5667777776666521 1122332 23444444444444 666666666666553 222 111122344555555
Q ss_pred cCCHHHHHHHHHh
Q 037816 305 CGSVEDAWQIFEF 317 (648)
Q Consensus 305 ~~~~~~A~~~~~~ 317 (648)
..++..|.+++.-
T Consensus 140 dkD~~sA~elLav 152 (629)
T KOG2300|consen 140 DKDFPSALELLAV 152 (629)
T ss_pred hccchhHHHHHhc
Confidence 6667777766543
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=30.51 E-value=4e+02 Score=23.93 Aligned_cols=61 Identities=13% Similarity=0.020 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHh
Q 037816 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT-FLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
....+.++..+...|+++.|-+.|.-+.... ..|... |..=+..+.+.+.-....+.++.+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3466778888899999999999999988753 345432 333334444444433333444444
No 482
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.81 E-value=4.6e+02 Score=24.32 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=68.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHH
Q 037816 298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG 377 (648)
Q Consensus 298 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 377 (648)
.+..|.+.-++.-|....+++.+|= .+- ..+--|.+..+..--.++.+-....+++-+......++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-Hhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 4455666666665555555554430 001 11112333333332233333333444444444444333 3445555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816 378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457 (648)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 457 (648)
...++.-... -.+-.+..+|+-.-+|.+.....++..|. .+++++|.++++++-+.|..|
T Consensus 212 lNnLQst~~g-------------------~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG-------------------FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc-------------------ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 5444432211 01112334444445566666666666554 467888888888888888777
Q ss_pred CH
Q 037816 458 TD 459 (648)
Q Consensus 458 ~~ 459 (648)
..
T Consensus 272 ~D 273 (333)
T KOG0991|consen 272 ED 273 (333)
T ss_pred HH
Confidence 54
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.77 E-value=2.5e+02 Score=23.69 Aligned_cols=61 Identities=5% Similarity=-0.003 Sum_probs=30.6
Q ss_pred HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 037816 245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306 (648)
Q Consensus 245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (648)
.+.+++.|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 9 ~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555655554332 445555555555666666666666655444433222334444443
No 484
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.63 E-value=1.6e+02 Score=21.77 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.5
Q ss_pred hcCChhHHHHHhc
Q 037816 203 KCGSSSSGRKVFG 215 (648)
Q Consensus 203 ~~g~~~~A~~~~~ 215 (648)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444444
No 485
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.97 E-value=6.2e+02 Score=25.60 Aligned_cols=55 Identities=4% Similarity=-0.048 Sum_probs=32.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHh--ccCChhHHHHHHHHHHHh
Q 037816 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFG--VDTSLGLGKQIHSLIIKS 387 (648)
Q Consensus 332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 387 (648)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888888888888776 555444 3344444444 233455666666655443
No 486
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.49 E-value=62 Score=26.64 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=24.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC 469 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 469 (648)
..|.-.+|-.+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999988885 45565543
No 487
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.71 E-value=1e+03 Score=27.72 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=14.8
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHhccC
Q 037816 296 SALMDMYSKCG--SVEDAWQIFEFAEE 320 (648)
Q Consensus 296 ~~l~~~~~~~~--~~~~A~~~~~~~~~ 320 (648)
..++.+|.+.+ ++++|+.+..++.+
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 44556666665 56666666665554
No 488
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.64 E-value=2.9e+02 Score=28.22 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=28.3
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 518 IERMPVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 518 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
|...++.|. ..+++.-+..+.+.+++..|-.+.++++++.|+.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333345543 3445666677788999999999999999998864
No 489
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.58 E-value=1.7e+03 Score=30.18 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 327 TVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 327 ~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
..++.++..--...+|..++..+.+
T Consensus 2636 ~~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2636 VPLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455555555555555555555433
No 490
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=27.48 E-value=7e+02 Score=25.76 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=17.3
Q ss_pred HHHHHHcCCCcCHHHH--HHHHHHHhccCChhHHH
Q 037816 346 FVKMVKAGIEIDPNMV--SAVLGVFGVDTSLGLGK 378 (648)
Q Consensus 346 ~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~ 378 (648)
.+.+.+.|..++..++ ++.+.-|+..|.++-..
T Consensus 166 ~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq 200 (615)
T KOG0508|consen 166 AQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQ 200 (615)
T ss_pred HHHHHHhCCCcchhcccCchHHHhhhhcccHHHHH
Confidence 3344455555555544 45555666666655433
No 491
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.06 E-value=1e+03 Score=27.53 Aligned_cols=255 Identities=7% Similarity=-0.051 Sum_probs=123.0
Q ss_pred HHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 037816 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN 392 (648)
Q Consensus 313 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 392 (648)
.+...+.++|+..-...+..+.+.+.. .+...+.+... .++...-...+.++...+........+..+.+. ++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 444445556666666666666665543 34444444432 233333334444443332211111222222221 45
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472 (648)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 472 (648)
+.+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555543311 12233444556666555556666665544322 12222 235555555566666555
Q ss_pred CcHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816 473 GLVNK-GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 473 g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 551 (648)
+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+-..+|...-...+.++...+.. ++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-chHHHHH
Confidence 54332 3344444433 3566667777777777776555433333332345555555566666666553 3444444
Q ss_pred HHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 552 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.+++ -++..+-...+.++.+.+.-.++...+....+
T Consensus 845 ~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 4432 22345555666666654333455555555544
No 492
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=27.04 E-value=3.3e+02 Score=21.75 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK 585 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 585 (648)
+++.+.+...+.|..+..+..++.-+...--|+++..--+
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak 102 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAK 102 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666667777776555566555544445555554433
No 493
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.66 E-value=4.8e+02 Score=23.79 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=7.6
Q ss_pred HHHHHHHHhccCcHH
Q 037816 462 FLSLLHACSHVGLVN 476 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~ 476 (648)
+..+...|...|+.+
T Consensus 121 ~LrlAWlyR~~~~~~ 135 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEE 135 (214)
T ss_pred HHHHHHHhhccCCHH
Confidence 334445555666543
No 494
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=26.29 E-value=2.7e+02 Score=20.69 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=40.1
Q ss_pred CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCC
Q 037816 43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ 104 (648)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 104 (648)
=+.....++....++|..-....+.+.+.+.++|+. .|+..+...-+..+.+.|+
T Consensus 12 L~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~-------~Ps~e~l~~~L~~Li~erk 66 (80)
T PF10264_consen 12 LPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIA-------IPSQEVLYNTLGTLIKERK 66 (80)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCC-------CCCHHHHHHHHHHHHHcCc
Confidence 456677888888899999999999999999988763 5665554444555555443
No 495
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=26.22 E-value=3.7e+02 Score=22.06 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHH
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVW-QALLGACSIHGDSEMGKYAAE 551 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~ 551 (648)
.+..++.-++.=.|..++|.++++..+..++-... .-++..|....+.++-.++-+
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34445555555566666666666665444433332 234555555555544444433
No 496
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.19 E-value=79 Score=30.75 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=74.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChHHHH
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVL-VWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~ 547 (648)
...|.++.|++.+...++ --++....|..-..++.+.+++..|++-+... .+.||.. -|-.-..+..-.|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 455778888888888876 34556666666777788888888888777766 5556532 2433444556678888888
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..+..+.+++-+. .+-..+-.+.-+.+..++-...+++.++.
T Consensus 203 ~dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 8888887776442 22333334444555555555555554443
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.02 E-value=8.5e+02 Score=27.56 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=84.9
Q ss_pred HHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816 402 MYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 481 (648)
....+|+++.|++.-..+- +..+|..|...-...|+.+-|+..|++... |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4456788888877766554 456788888888888998888888887764 23344446677888777666
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.+.+..+ .|.... +. .-.-.|+.++-.++++..+..|-. | .....+|.-++|.++.++...
T Consensus 721 ~~iae~r----~D~~~~--~q-nalYl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATGQ--FQ-NALYLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHHH--HH-HHHHhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhcc
Confidence 6655432 222111 11 112258888888888888655422 1 123457888889888888765
No 498
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=25.67 E-value=5.6e+02 Score=25.18 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-----HHHHHHHHHHhccCChhHHHHHHHHHHH-----hCCCCchhH--
Q 037816 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-----NMVSAVLGVFGVDTSLGLGKQIHSLIIK-----SDFTSNPFV-- 395 (648)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-- 395 (648)
.++...-+.++.++|++.++++.+.-..-+. ...+....++...|+...+.+++++..+ .+++|++++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q 037816 396 NNGLINMYSKCGDLEDSIK 414 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~ 414 (648)
|..--..|-..|++.....
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
No 499
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.64 E-value=3.1e+02 Score=21.30 Aligned_cols=29 Identities=24% Similarity=0.015 Sum_probs=16.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
|.-.|++.|+.+.|.+-|+.-..+.|.+.
T Consensus 78 LGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 78 LGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 34445566666666666666555556553
No 500
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.34 E-value=73 Score=20.58 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCcccC
Q 037816 627 LAELLRLMIDEGYVPN 642 (648)
Q Consensus 627 ~~~~~~~m~~~g~~p~ 642 (648)
.+++...+.+.||+||
T Consensus 31 r~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 31 RERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHCCCCC
Confidence 4477777789999997
Done!