Query 037816
Match_columns 648
No_of_seqs 605 out of 4046
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 07:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.6E-40 1.6E-44 355.7 40.8 480 99-590 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.7E-39 9.1E-44 349.7 34.7 479 43-572 83-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.6E-26 2.6E-30 230.2 42.9 372 127-576 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-25 1.1E-29 225.5 39.7 354 229-590 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 5.8E-27 2E-31 242.2 23.4 183 325-508 28-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 3.5E-27 1.2E-31 243.9 19.7 211 138-370 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 5.8E-23 2E-27 217.2 33.6 239 325-567 239-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.5E-23 2.2E-27 216.8 32.2 261 326-591 189-479 (514)
9 3fp2_A TPR repeat-containing p 99.9 9.5E-22 3.3E-26 209.2 36.9 427 121-561 26-496 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 8.4E-21 2.9E-25 197.0 35.1 303 224-534 28-370 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 5.9E-21 2E-25 198.2 33.2 325 255-587 24-406 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.7E-20 5.9E-25 199.4 32.9 426 88-526 24-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.2E-18 4.3E-23 174.4 34.5 304 258-590 4-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5.1E-18 1.7E-22 170.0 33.4 324 221-573 2-352 (359)
15 3hym_B Cell division cycle pro 99.8 7.3E-18 2.5E-22 166.7 29.8 287 289-578 19-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 5.3E-15 1.8E-19 161.9 51.6 410 11-479 950-1375(1630)
17 3hym_B Cell division cycle pro 99.8 2.4E-17 8.2E-22 163.0 28.3 265 321-590 20-299 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 4.8E-15 1.6E-19 162.3 46.5 471 48-586 843-1341(1630)
19 1fch_A Peroxisomal targeting s 99.8 1.8E-17 6E-22 166.9 24.9 282 302-587 35-356 (368)
20 2xm6_A Protein corresponding t 99.8 1E-15 3.5E-20 160.3 38.0 365 190-573 38-452 (490)
21 2ooe_A Cleavage stimulation fa 99.8 1.9E-15 6.5E-20 159.9 40.4 421 143-590 2-492 (530)
22 1b89_A Protein (clathrin heavy 99.8 2.5E-17 8.6E-22 162.0 22.6 347 203-586 15-368 (449)
23 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6E-22 163.1 21.3 284 101-417 15-306 (449)
24 4eqf_A PEX5-related protein; a 99.8 3E-17 1E-21 165.0 21.8 261 322-586 64-352 (365)
25 2xm6_A Protein corresponding t 99.8 7.5E-15 2.6E-19 153.6 40.6 353 220-593 37-435 (490)
26 2ooe_A Cleavage stimulation fa 99.8 5.9E-15 2E-19 156.1 38.5 407 119-559 12-495 (530)
27 3mkr_A Coatomer subunit epsilo 99.7 1.5E-15 5E-20 146.6 30.2 270 300-583 7-287 (291)
28 3cv0_A Peroxisome targeting si 99.7 1.2E-16 4.1E-21 157.7 22.5 258 325-587 23-312 (327)
29 4g1t_A Interferon-induced prot 99.7 7.8E-16 2.7E-20 160.6 29.5 281 307-600 153-469 (472)
30 1fch_A Peroxisomal targeting s 99.7 3E-16 1E-20 157.8 22.8 146 405-553 193-356 (368)
31 3mkr_A Coatomer subunit epsilo 99.7 5.1E-16 1.8E-20 149.8 21.6 247 330-591 6-265 (291)
32 4eqf_A PEX5-related protein; a 99.7 6.8E-16 2.3E-20 155.1 21.0 232 357-591 64-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.8E-20 150.7 18.5 272 259-557 23-316 (327)
34 4g1t_A Interferon-induced prot 99.7 1.6E-14 5.4E-19 150.6 26.7 379 158-568 53-471 (472)
35 2pl2_A Hypothetical conserved 99.6 8.3E-15 2.8E-19 134.9 19.6 196 390-588 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.6 2.5E-14 8.6E-19 135.6 22.7 217 361-590 8-236 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 7.5E-16 2.6E-20 163.5 9.1 149 290-438 125-286 (1134)
38 3uq3_A Heat shock protein STI1 99.6 2.7E-14 9.1E-19 135.5 18.6 233 325-569 7-255 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.2E-14 2.1E-18 134.4 21.3 241 335-584 17-269 (275)
40 3spa_A Mtrpol, DNA-directed RN 99.6 1E-15 3.4E-20 162.5 9.2 116 392-508 126-249 (1134)
41 3u4t_A TPR repeat-containing p 99.6 9E-14 3.1E-18 133.1 19.7 246 295-575 6-269 (272)
42 3e4b_A ALGK; tetratricopeptide 99.6 5.6E-13 1.9E-17 137.2 25.2 374 167-590 14-421 (452)
43 2vq2_A PILW, putative fimbrial 99.5 1.1E-12 3.7E-17 121.3 21.8 197 392-590 7-211 (225)
44 2ho1_A Type 4 fimbrial biogene 99.5 9.1E-13 3.1E-17 124.4 21.4 195 394-590 38-238 (252)
45 2q7f_A YRRB protein; TPR, prot 99.5 2.4E-13 8.2E-18 127.6 17.0 162 425-589 58-221 (243)
46 2q7f_A YRRB protein; TPR, prot 99.5 2.7E-13 9.2E-18 127.2 17.0 216 355-574 20-240 (243)
47 1ouv_A Conserved hypothetical 99.5 5.5E-12 1.9E-16 120.7 26.3 188 395-591 40-252 (273)
48 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.5E-17 134.4 23.3 344 227-592 8-389 (452)
49 2ho1_A Type 4 fimbrial biogene 99.5 2.9E-12 9.8E-17 121.0 23.5 197 366-565 45-247 (252)
50 2h6f_A Protein farnesyltransfe 99.5 1.5E-12 5.2E-17 129.7 21.7 244 325-573 99-365 (382)
51 3u4t_A TPR repeat-containing p 99.5 1.3E-12 4.6E-17 124.8 20.7 224 364-591 9-251 (272)
52 3vtx_A MAMA; tetratricopeptide 99.5 2.2E-12 7.4E-17 115.3 20.2 165 423-590 4-170 (184)
53 2pl2_A Hypothetical conserved 99.5 2.1E-12 7.2E-17 118.7 20.5 186 329-520 11-210 (217)
54 2h6f_A Protein farnesyltransfe 99.5 2.1E-12 7.1E-17 128.7 21.4 227 358-589 97-347 (382)
55 2vq2_A PILW, putative fimbrial 99.5 6E-12 2E-16 116.3 23.2 205 360-567 10-222 (225)
56 4a1s_A PINS, partner of inscut 99.5 3.3E-13 1.1E-17 137.7 15.4 261 329-590 54-372 (411)
57 1ouv_A Conserved hypothetical 99.5 1.6E-11 5.4E-16 117.5 25.9 223 324-560 7-255 (273)
58 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.2E-17 132.5 19.3 95 291-385 8-114 (406)
59 3ro2_A PINS homolog, G-protein 99.5 1.5E-12 5.3E-17 128.4 18.1 260 330-590 12-332 (338)
60 4abn_A Tetratricopeptide repea 99.4 1.2E-12 4.1E-17 135.7 16.5 192 391-586 100-317 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-12 8.6E-17 123.1 17.0 218 369-591 16-245 (275)
62 4e6h_A MRNA 3'-END-processing 99.4 8.6E-10 2.9E-14 117.4 37.7 217 340-561 326-575 (679)
63 3sf4_A G-protein-signaling mod 99.4 1.6E-12 5.5E-17 132.2 14.7 297 254-578 6-364 (406)
64 4a1s_A PINS, partner of inscut 99.4 6.3E-12 2.2E-16 128.2 16.1 270 262-559 53-375 (411)
65 3vtx_A MAMA; tetratricopeptide 99.4 2.5E-11 8.5E-16 108.3 17.3 167 391-560 3-174 (184)
66 3ulq_A Response regulator aspa 99.4 1.1E-11 3.6E-16 125.2 16.6 195 394-589 144-367 (383)
67 2ond_A Cleavage stimulation fa 99.3 3.9E-10 1.3E-14 109.8 26.0 219 340-562 33-276 (308)
68 3nf1_A KLC 1, kinesin light ch 99.3 2.2E-12 7.6E-17 125.9 10.0 235 324-589 28-306 (311)
69 3as5_A MAMA; tetratricopeptide 99.3 4.1E-11 1.4E-15 106.7 17.1 161 427-590 11-173 (186)
70 3ro2_A PINS homolog, G-protein 99.3 2.2E-11 7.6E-16 120.0 16.8 267 262-559 10-335 (338)
71 4e6h_A MRNA 3'-END-processing 99.3 2.7E-09 9.2E-14 113.6 33.6 435 41-508 63-587 (679)
72 3ulq_A Response regulator aspa 99.3 1E-10 3.4E-15 118.0 21.7 229 329-557 109-369 (383)
73 4gyw_A UDP-N-acetylglucosamine 99.3 2.6E-11 8.8E-16 130.7 17.7 162 423-589 8-173 (723)
74 1hz4_A MALT regulatory protein 99.3 2E-09 6.9E-14 107.9 28.6 257 333-589 24-321 (373)
75 2ond_A Cleavage stimulation fa 99.3 4.9E-10 1.7E-14 109.1 22.1 212 375-591 33-271 (308)
76 3nf1_A KLC 1, kinesin light ch 99.3 1.7E-11 5.8E-16 119.5 11.5 239 290-559 25-310 (311)
77 4i17_A Hypothetical protein; T 99.3 3.3E-10 1.1E-14 104.9 19.1 205 356-571 5-224 (228)
78 3q15_A PSP28, response regulat 99.3 1.3E-10 4.5E-15 116.9 17.8 194 395-589 143-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 4.5E-10 1.5E-14 99.9 19.3 167 394-563 9-180 (186)
80 4i17_A Hypothetical protein; T 99.2 2.3E-10 7.8E-15 106.0 17.2 189 391-590 5-209 (228)
81 3q15_A PSP28, response regulat 99.2 6.5E-09 2.2E-13 104.4 26.4 227 329-556 107-365 (378)
82 4abn_A Tetratricopeptide repea 99.2 6.4E-10 2.2E-14 115.1 19.3 209 339-552 84-317 (474)
83 3edt_B KLC 2, kinesin light ch 99.1 9.8E-10 3.4E-14 105.1 14.7 222 369-590 12-281 (283)
84 1hz4_A MALT regulatory protein 99.1 5.7E-08 1.9E-12 97.3 27.6 258 230-487 22-321 (373)
85 3qky_A Outer membrane assembly 99.1 8.1E-09 2.8E-13 97.7 19.8 205 392-636 14-247 (261)
86 4gyw_A UDP-N-acetylglucosamine 99.1 1.4E-09 4.8E-14 117.2 15.7 165 390-558 6-176 (723)
87 3mv2_B Coatomer subunit epsilo 99.1 1.9E-08 6.4E-13 94.9 21.1 138 300-452 21-164 (310)
88 2fo7_A Synthetic consensus TPR 99.0 4.3E-09 1.5E-13 87.7 14.4 126 463-590 5-132 (136)
89 1qqe_A Vesicular transport pro 99.0 3.8E-09 1.3E-13 101.8 15.6 216 307-560 32-273 (292)
90 3qky_A Outer membrane assembly 99.0 4.6E-09 1.6E-13 99.4 15.9 203 355-579 12-250 (261)
91 1qqe_A Vesicular transport pro 99.0 2.6E-09 9E-14 102.9 13.3 201 373-588 32-267 (292)
92 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.6E-08 5.4E-13 93.2 17.7 180 394-592 5-215 (225)
93 3edt_B KLC 2, kinesin light ch 99.0 8.8E-09 3E-13 98.4 16.4 198 359-556 44-281 (283)
94 3mv2_B Coatomer subunit epsilo 99.0 2.4E-08 8.1E-13 94.2 18.7 240 330-591 20-283 (310)
95 2fo7_A Synthetic consensus TPR 99.0 1.8E-08 6E-13 83.9 16.0 131 426-559 3-135 (136)
96 4ga2_A E3 SUMO-protein ligase 99.0 4.9E-10 1.7E-14 95.8 5.5 139 434-576 7-149 (150)
97 3qou_A Protein YBBN; thioredox 99.0 1.4E-08 4.8E-13 97.4 16.2 177 409-589 102-283 (287)
98 4ga2_A E3 SUMO-protein ligase 98.9 2.4E-09 8.2E-14 91.5 8.7 122 465-589 3-128 (150)
99 2pzi_A Probable serine/threoni 98.9 7.7E-09 2.6E-13 112.1 14.8 169 404-576 402-583 (681)
100 3rjv_A Putative SEL1 repeat pr 98.9 8.5E-08 2.9E-12 87.2 19.6 172 412-592 5-199 (212)
101 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.6E-13 106.5 15.8 160 406-568 2-169 (568)
102 3urz_A Uncharacterized protein 98.9 4.4E-08 1.5E-12 88.9 15.4 128 429-560 59-190 (208)
103 2r5s_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 88.9 11.8 156 430-589 12-172 (176)
104 3gyz_A Chaperone protein IPGC; 98.8 1.7E-08 5.7E-13 85.8 10.7 102 490-591 30-134 (151)
105 2ifu_A Gamma-SNAP; membrane fu 98.8 8.8E-08 3E-12 92.9 16.8 218 336-582 4-253 (307)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 3.6E-08 1.2E-12 95.6 12.5 195 371-588 4-222 (307)
107 3u3w_A Transcriptional activat 98.8 7.5E-07 2.6E-11 85.7 21.6 161 429-589 80-265 (293)
108 2vgx_A Chaperone SYCD; alterna 98.8 2.6E-08 8.7E-13 84.7 9.7 97 494-590 20-118 (148)
109 2vsy_A XCC0866; transferase, g 98.8 1.1E-07 3.7E-12 101.2 16.8 146 372-521 3-154 (568)
110 2qfc_A PLCR protein; TPR, HTH, 98.8 2.2E-07 7.6E-12 89.4 17.2 163 426-589 77-265 (293)
111 2pzi_A Probable serine/threoni 98.8 2.3E-07 7.8E-12 100.5 19.2 190 369-562 402-608 (681)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.1E-07 7.1E-12 84.7 16.0 129 426-560 8-154 (213)
113 4gco_A Protein STI-1; structur 98.7 5.8E-08 2E-12 79.9 10.7 94 496-589 14-109 (126)
114 3dra_A Protein farnesyltransfe 98.7 1.9E-06 6.3E-11 82.2 22.5 217 340-561 50-293 (306)
115 2uy1_A Cleavage stimulation fa 98.7 7.1E-06 2.4E-10 84.7 28.6 82 103-184 28-117 (493)
116 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.9E-07 9.8E-12 84.7 16.3 185 357-562 3-219 (225)
117 3urz_A Uncharacterized protein 98.7 5.7E-07 1.9E-11 81.5 17.4 183 328-535 9-198 (208)
118 4gco_A Protein STI-1; structur 98.7 1.4E-07 4.8E-12 77.5 12.0 109 460-570 14-124 (126)
119 1a17_A Serine/threonine protei 98.7 2.2E-07 7.7E-12 80.5 13.6 127 461-589 15-145 (166)
120 2r5s_A Uncharacterized protein 98.7 1.9E-07 6.4E-12 82.1 13.1 156 396-555 9-172 (176)
121 2uy1_A Cleavage stimulation fa 98.7 1E-05 3.5E-10 83.5 28.0 366 133-555 7-412 (493)
122 2xcb_A PCRH, regulatory protei 98.7 1.9E-07 6.3E-12 78.8 12.4 97 494-590 17-115 (142)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.2E-07 2.8E-11 80.7 17.5 129 396-527 9-154 (213)
124 3qou_A Protein YBBN; thioredox 98.7 9.9E-07 3.4E-11 84.4 18.6 162 357-520 116-280 (287)
125 3dra_A Protein farnesyltransfe 98.7 1.3E-05 4.4E-10 76.4 25.9 213 373-589 48-286 (306)
126 2c2l_A CHIP, carboxy terminus 98.6 6.4E-08 2.2E-12 92.4 8.9 192 392-590 3-199 (281)
127 1na0_A Designed protein CTPR3; 98.6 4.6E-07 1.6E-11 74.0 12.9 115 459-575 9-125 (125)
128 3u3w_A Transcriptional activat 98.6 4.6E-06 1.6E-10 80.0 21.7 201 346-555 34-265 (293)
129 2lni_A Stress-induced-phosphop 98.6 3.8E-07 1.3E-11 75.5 12.3 116 459-576 16-133 (133)
130 2vyi_A SGTA protein; chaperone 98.6 3.4E-07 1.2E-11 75.5 11.8 117 459-577 12-130 (131)
131 2e2e_A Formate-dependent nitri 98.6 1.5E-07 5.2E-12 82.8 9.3 120 470-591 21-145 (177)
132 1p5q_A FKBP52, FK506-binding p 98.6 4.8E-07 1.7E-11 88.7 12.9 94 495-588 196-292 (336)
133 3upv_A Heat shock protein STI1 98.6 4.2E-07 1.4E-11 74.7 10.6 96 495-590 4-101 (126)
134 3rjv_A Putative SEL1 repeat pr 98.5 5.8E-06 2E-10 75.0 18.4 158 322-488 17-197 (212)
135 2kck_A TPR repeat; tetratricop 98.5 5.9E-07 2E-11 71.7 10.5 99 494-592 5-108 (112)
136 2qfc_A PLCR protein; TPR, HTH, 98.5 2.1E-06 7.1E-11 82.5 16.3 161 395-555 77-265 (293)
137 3gyz_A Chaperone protein IPGC; 98.5 6.7E-07 2.3E-11 75.8 11.2 105 455-561 31-138 (151)
138 4gcn_A Protein STI-1; structur 98.5 3E-07 1E-11 75.7 7.9 95 496-590 9-112 (127)
139 3sz7_A HSC70 cochaperone (SGT) 98.5 2.1E-06 7.1E-11 74.3 13.8 107 459-567 11-119 (164)
140 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.4E-11 78.0 13.2 153 436-589 4-175 (203)
141 2vgx_A Chaperone SYCD; alterna 98.5 2.6E-07 8.9E-12 78.4 7.3 106 458-565 20-127 (148)
142 3q49_B STIP1 homology and U bo 98.5 1.3E-06 4.5E-11 72.8 11.6 98 493-590 7-106 (137)
143 1hxi_A PEX5, peroxisome target 98.5 6.3E-07 2.1E-11 73.0 9.1 96 496-591 18-115 (121)
144 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-06 4.2E-11 78.6 11.7 96 496-591 89-187 (198)
145 2e2e_A Formate-dependent nitri 98.4 1.5E-06 5.1E-11 76.3 11.7 127 435-564 21-152 (177)
146 4f3v_A ESX-1 secretion system 98.4 1.6E-06 5.5E-11 80.7 12.0 123 465-590 108-237 (282)
147 1elw_A TPR1-domain of HOP; HOP 98.4 2.9E-06 9.8E-11 68.3 12.3 108 461-570 6-115 (118)
148 1elw_A TPR1-domain of HOP; HOP 98.4 2E-06 6.9E-11 69.2 11.3 98 494-591 3-102 (118)
149 2hr2_A Hypothetical protein; a 98.4 6.3E-07 2.1E-11 75.1 8.1 91 500-590 16-131 (159)
150 2dba_A Smooth muscle cell asso 98.4 2.6E-06 8.8E-11 72.0 12.1 96 494-589 27-127 (148)
151 2lni_A Stress-induced-phosphop 98.4 1.8E-06 6.2E-11 71.3 10.8 98 493-590 14-113 (133)
152 1na0_A Designed protein CTPR3; 98.4 2E-06 6.9E-11 70.0 10.9 96 495-590 9-106 (125)
153 4f3v_A ESX-1 secretion system 98.4 3E-06 1E-10 78.8 12.8 135 428-567 106-247 (282)
154 3gw4_A Uncharacterized protein 98.4 2.7E-06 9.1E-11 76.5 12.3 152 405-556 4-176 (203)
155 1a17_A Serine/threonine protei 98.4 5.7E-06 2E-10 71.4 13.9 128 425-555 14-145 (166)
156 3upv_A Heat shock protein STI1 98.4 3.2E-06 1.1E-10 69.3 11.0 110 460-571 5-122 (126)
157 2xcb_A PCRH, regulatory protei 98.3 2.4E-06 8.2E-11 71.8 10.3 108 460-569 19-128 (142)
158 3sz7_A HSC70 cochaperone (SGT) 98.3 5.4E-06 1.9E-10 71.6 12.4 94 425-521 12-105 (164)
159 2vyi_A SGTA protein; chaperone 98.3 4.1E-06 1.4E-10 68.8 10.9 97 494-590 11-109 (131)
160 3q7a_A Farnesyltransferase alp 98.3 7.3E-05 2.5E-09 72.0 20.9 32 558-589 299-330 (349)
161 3q7a_A Farnesyltransferase alp 98.3 0.00029 9.8E-09 67.9 24.9 231 334-569 65-345 (349)
162 3rkv_A Putative peptidylprolyl 98.3 4.2E-06 1.4E-10 72.2 11.2 64 527-590 63-126 (162)
163 2c2l_A CHIP, carboxy terminus 98.3 7.6E-06 2.6E-10 77.9 13.7 189 358-556 4-199 (281)
164 2dba_A Smooth muscle cell asso 98.3 1.1E-05 3.8E-10 67.9 13.1 113 458-573 27-145 (148)
165 2xev_A YBGF; tetratricopeptide 98.3 2.4E-06 8.1E-11 70.3 8.6 90 501-590 8-105 (129)
166 3q49_B STIP1 homology and U bo 98.3 5.7E-06 1.9E-10 68.8 10.9 101 457-559 7-109 (137)
167 2fbn_A 70 kDa peptidylprolyl i 98.2 1.9E-06 6.4E-11 77.3 7.7 96 495-590 38-151 (198)
168 3dss_A Geranylgeranyl transfer 98.2 0.00024 8.2E-09 68.1 22.2 177 410-589 91-303 (331)
169 1elr_A TPR2A-domain of HOP; HO 98.2 4.9E-06 1.7E-10 68.3 8.9 96 495-590 4-108 (131)
170 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4.1E-11 70.8 5.0 82 508-589 3-89 (117)
171 2kck_A TPR repeat; tetratricop 98.2 6.9E-06 2.4E-10 65.2 9.2 100 460-561 7-111 (112)
172 2xev_A YBGF; tetratricopeptide 98.2 1.7E-05 5.6E-10 65.1 11.7 103 465-569 8-118 (129)
173 1wao_1 Serine/threonine protei 98.2 3.9E-06 1.3E-10 86.5 9.5 117 467-585 14-134 (477)
174 3ro3_A PINS homolog, G-protein 98.2 1.1E-05 3.8E-10 69.0 10.9 128 462-589 12-157 (164)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.9E-05 6.3E-10 81.0 14.2 95 495-589 317-414 (457)
176 1elr_A TPR2A-domain of HOP; HO 98.2 1.4E-05 4.9E-10 65.5 11.0 107 462-571 7-122 (131)
177 4b4t_Q 26S proteasome regulato 98.2 1.9E-05 6.6E-10 80.5 14.2 164 426-589 57-244 (434)
178 1hxi_A PEX5, peroxisome target 98.1 7.7E-06 2.6E-10 66.4 8.7 97 463-561 21-119 (121)
179 3dss_A Geranylgeranyl transfer 98.1 0.00042 1.4E-08 66.4 21.9 193 374-571 90-319 (331)
180 1ihg_A Cyclophilin 40; ppiase 98.1 1.6E-05 5.6E-10 78.7 11.7 90 494-583 272-363 (370)
181 1p5q_A FKBP52, FK506-binding p 98.1 3.8E-05 1.3E-09 75.1 14.1 129 423-555 146-293 (336)
182 2if4_A ATFKBP42; FKBP-like, al 98.1 9.6E-06 3.3E-10 79.5 9.0 148 424-591 179-329 (338)
183 1wao_1 Serine/threonine protei 98.1 4E-05 1.4E-09 78.9 14.0 114 435-551 17-134 (477)
184 4gcn_A Protein STI-1; structur 98.0 5.4E-05 1.9E-09 61.9 12.1 60 427-487 11-70 (127)
185 3rkv_A Putative peptidylprolyl 98.0 1.3E-05 4.5E-10 69.0 8.3 78 494-571 62-142 (162)
186 4b4t_Q 26S proteasome regulato 98.0 0.0001 3.4E-09 75.1 15.6 158 432-589 12-203 (434)
187 2hr2_A Hypothetical protein; a 98.0 2.3E-05 8E-10 65.6 8.7 102 465-569 17-144 (159)
188 3k9i_A BH0479 protein; putativ 98.0 5.5E-06 1.9E-10 66.8 4.6 92 472-564 3-98 (117)
189 3ro3_A PINS homolog, G-protein 98.0 3.6E-05 1.2E-09 65.8 9.8 132 426-557 11-159 (164)
190 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 73.4 18.9 169 408-579 44-244 (567)
191 3ma5_A Tetratricopeptide repea 98.0 3.8E-05 1.3E-09 59.7 9.0 65 526-590 6-70 (100)
192 2l6j_A TPR repeat-containing p 97.9 3.1E-06 1.1E-10 67.4 2.5 93 494-586 3-103 (111)
193 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 4.2E-05 1.4E-09 78.3 11.2 65 527-591 317-381 (457)
194 1ihg_A Cyclophilin 40; ppiase 97.9 6.3E-05 2.1E-09 74.5 11.3 113 459-590 223-336 (370)
195 3n71_A Histone lysine methyltr 97.9 8.7E-05 3E-09 75.9 12.4 123 469-591 319-465 (490)
196 2if4_A ATFKBP42; FKBP-like, al 97.9 3.5E-05 1.2E-09 75.4 9.1 150 393-561 179-333 (338)
197 1na3_A Designed protein CTPR2; 97.8 7.4E-05 2.5E-09 56.6 8.5 82 494-575 8-91 (91)
198 2kat_A Uncharacterized protein 97.8 9.4E-05 3.2E-09 59.2 9.2 78 513-590 3-82 (115)
199 1klx_A Cysteine rich protein B 97.7 0.00032 1.1E-08 58.2 11.2 112 473-592 9-128 (138)
200 3bee_A Putative YFRE protein; 97.6 0.00031 1.1E-08 53.3 9.1 69 524-592 3-74 (93)
201 1zu2_A Mitochondrial import re 97.6 3.4E-05 1.2E-09 64.4 4.0 84 508-591 15-121 (158)
202 2l6j_A TPR repeat-containing p 97.6 0.00017 5.7E-09 57.0 7.9 67 525-591 2-68 (111)
203 1dce_A Protein (RAB geranylger 97.5 0.0013 4.4E-08 69.0 15.0 149 438-590 43-221 (567)
204 1pc2_A Mitochondria fission pr 97.5 0.00069 2.4E-08 55.9 9.5 65 525-589 30-99 (152)
205 3lvg_A Clathrin heavy chain 1; 97.4 9E-05 3.1E-09 72.4 4.7 395 88-517 53-534 (624)
206 1na3_A Designed protein CTPR2; 97.4 0.00041 1.4E-08 52.3 7.7 64 527-590 9-72 (91)
207 1zu2_A Mitochondrial import re 97.4 0.00011 3.8E-09 61.3 4.4 50 512-561 63-125 (158)
208 3n71_A Histone lysine methyltr 97.4 0.00022 7.6E-09 72.9 7.4 114 504-635 318-449 (490)
209 2kat_A Uncharacterized protein 97.4 0.00063 2.2E-08 54.2 8.3 80 478-559 4-85 (115)
210 3qwp_A SET and MYND domain-con 97.3 0.00043 1.5E-08 69.7 8.1 115 503-635 295-427 (429)
211 1klx_A Cysteine rich protein B 97.3 0.0036 1.2E-07 51.7 12.2 113 437-558 8-128 (138)
212 1wy6_A Hypothetical protein ST 97.3 0.029 9.9E-07 44.3 15.7 141 434-593 17-157 (172)
213 3u64_A Protein TP_0956; tetrat 97.2 0.00081 2.8E-08 61.8 8.0 86 511-596 179-275 (301)
214 2kc7_A BFR218_protein; tetratr 97.2 0.00035 1.2E-08 53.9 4.7 79 501-587 6-87 (99)
215 3lvg_A Clathrin heavy chain 1; 97.2 3.7E-05 1.3E-09 75.1 -1.4 238 189-444 52-324 (624)
216 3ly7_A Transcriptional activat 97.1 0.012 4.3E-07 56.5 15.3 138 421-560 191-343 (372)
217 2kc7_A BFR218_protein; tetratr 97.1 0.0011 3.7E-08 51.0 6.7 59 533-591 6-65 (99)
218 3qww_A SET and MYND domain-con 97.1 0.00071 2.4E-08 67.9 6.8 82 508-589 311-410 (433)
219 3ma5_A Tetratricopeptide repea 97.0 0.003 1E-07 48.7 8.1 64 423-487 6-69 (100)
220 1qsa_A Protein (soluble lytic 96.8 0.7 2.4E-05 48.3 27.2 113 439-555 229-347 (618)
221 3qww_A SET and MYND domain-con 96.7 0.0054 1.8E-07 61.5 9.4 92 472-563 311-423 (433)
222 1nzn_A CGI-135 protein, fissio 96.6 0.01 3.6E-07 46.9 8.7 65 525-589 33-102 (126)
223 3mkq_A Coatomer beta'-subunit; 96.6 0.1 3.5E-06 57.6 20.1 46 302-349 662-707 (814)
224 3qwp_A SET and MYND domain-con 96.6 0.013 4.4E-07 58.8 11.5 99 466-564 294-413 (429)
225 3ly7_A Transcriptional activat 96.5 0.018 6.3E-07 55.3 11.6 134 455-592 190-341 (372)
226 3mkq_A Coatomer beta'-subunit; 96.5 0.064 2.2E-06 59.2 17.6 166 129-348 608-774 (814)
227 1y8m_A FIS1; mitochondria, unk 96.4 0.087 3E-06 42.4 12.7 92 523-640 35-130 (144)
228 2v5f_A Prolyl 4-hydroxylase su 96.4 0.018 6.2E-07 44.6 8.8 42 526-567 45-86 (104)
229 3bee_A Putative YFRE protein; 96.3 0.025 8.6E-07 42.6 8.9 69 492-560 3-76 (93)
230 1pc2_A Mitochondria fission pr 95.9 0.025 8.5E-07 46.6 7.8 87 475-563 14-107 (152)
231 2v5f_A Prolyl 4-hydroxylase su 95.7 0.042 1.4E-06 42.5 7.9 65 526-590 4-75 (104)
232 3mkq_B Coatomer subunit alpha; 95.4 0.68 2.3E-05 39.1 14.6 103 199-318 13-115 (177)
233 3o48_A Mitochondria fission 1 95.3 0.092 3.1E-06 41.7 8.4 68 522-589 35-106 (134)
234 1nzn_A CGI-135 protein, fissio 94.9 0.22 7.7E-06 39.3 9.8 90 474-565 16-112 (126)
235 4ady_A RPN2, 26S proteasome re 94.9 5.5 0.00019 43.4 28.2 248 300-554 382-656 (963)
236 3mkq_B Coatomer subunit alpha; 94.8 1.6 5.5E-05 36.9 17.1 44 405-450 17-60 (177)
237 4h7y_A Dual specificity protei 94.6 0.15 5.2E-06 41.3 8.1 53 541-593 74-126 (161)
238 3u64_A Protein TP_0956; tetrat 94.5 0.065 2.2E-06 49.3 6.7 82 475-559 179-272 (301)
239 4gns_B Protein CSD3, chitin bi 93.6 0.62 2.1E-05 49.7 12.8 54 535-588 345-398 (754)
240 4b4t_P 26S proteasome regulato 93.5 3.7 0.00013 41.1 17.9 114 134-249 30-164 (445)
241 2wpv_A GET4, UPF0363 protein Y 92.8 6.2 0.00021 37.0 16.9 167 193-385 35-215 (312)
242 4h7y_A Dual specificity protei 92.8 0.48 1.6E-05 38.5 7.9 107 458-567 12-134 (161)
243 1wy6_A Hypothetical protein ST 92.6 3.2 0.00011 33.0 13.5 141 232-390 17-157 (172)
244 4ady_A RPN2, 26S proteasome re 92.5 14 0.0005 40.3 29.5 469 47-537 148-671 (963)
245 2ff4_A Probable regulatory pro 91.8 0.38 1.3E-05 47.4 7.8 69 529-597 173-246 (388)
246 3ffl_A Anaphase-promoting comp 90.6 1.8 6.3E-05 35.9 9.4 123 453-587 12-148 (167)
247 3lpz_A GET4 (YOR164C homolog); 90.5 12 0.0004 35.4 21.6 168 394-589 36-215 (336)
248 2wpv_A GET4, UPF0363 protein Y 89.8 13 0.00044 34.8 21.8 168 295-488 36-217 (312)
249 4b4t_P 26S proteasome regulato 89.5 7.9 0.00027 38.7 15.2 182 407-589 30-246 (445)
250 1v54_E Cytochrome C oxidase po 89.2 4.5 0.00015 30.2 9.4 60 510-569 25-87 (109)
251 1v54_E Cytochrome C oxidase po 88.0 2.4 8.4E-05 31.5 7.3 64 439-504 25-88 (109)
252 4fhn_B Nucleoporin NUP120; pro 87.3 8.5 0.00029 44.0 15.4 64 527-590 899-967 (1139)
253 3o48_A Mitochondria fission 1 87.1 2 7E-05 34.0 7.0 70 493-562 38-113 (134)
254 2qx5_A Nucleoporin NIC96; mRNA 86.9 33 0.0011 36.0 18.7 20 506-525 549-568 (661)
255 1y8m_A FIS1; mitochondria, unk 86.0 3.5 0.00012 33.2 7.9 71 492-562 36-112 (144)
256 4fhn_B Nucleoporin NUP120; pro 85.8 12 0.0004 42.8 15.5 163 296-476 816-988 (1139)
257 2p58_C Putative type III secre 85.6 9.2 0.00031 28.4 9.3 86 272-362 22-107 (116)
258 2uwj_G Type III export protein 85.5 8.6 0.00029 28.5 8.9 87 272-363 21-107 (115)
259 2ff4_A Probable regulatory pro 84.9 6.1 0.00021 38.7 11.1 69 428-497 175-247 (388)
260 3txn_A 26S proteasome regulato 84.6 31 0.0011 33.6 15.7 162 394-555 20-209 (394)
261 3lpz_A GET4 (YOR164C homolog); 84.3 28 0.00096 32.8 23.3 166 296-487 39-215 (336)
262 2y69_E Cytochrome C oxidase su 84.0 10 0.00035 30.0 9.4 50 520-569 81-130 (152)
263 3ltj_A Alpharep-4; protein eng 83.6 20 0.0007 30.7 15.3 49 87-135 26-74 (201)
264 3ffl_A Anaphase-promoting comp 82.8 7 0.00024 32.4 8.6 26 461-486 65-90 (167)
265 1zbp_A Hypothetical protein VP 82.8 27 0.00092 31.7 13.1 120 433-562 6-135 (273)
266 1qsa_A Protein (soluble lytic 82.7 49 0.0017 34.5 36.8 338 86-448 69-437 (618)
267 2y69_E Cytochrome C oxidase su 82.5 5.5 0.00019 31.5 7.3 63 440-504 69-131 (152)
268 4gns_B Protein CSD3, chitin bi 80.6 7.6 0.00026 41.5 10.3 127 395-523 250-399 (754)
269 3ltm_A Alpha-REP4; protein eng 79.0 31 0.0011 29.8 16.7 48 88-135 32-79 (211)
270 3esl_A Checkpoint serine/threo 77.8 19 0.00067 30.9 10.1 92 523-639 73-168 (202)
271 1zbp_A Hypothetical protein VP 76.2 4.7 0.00016 36.5 6.1 58 503-560 5-64 (273)
272 4b4t_R RPN7, 26S proteasome re 71.1 17 0.0006 36.0 9.7 61 461-521 133-194 (429)
273 2uwj_G Type III export protein 70.6 30 0.001 25.7 11.4 89 371-464 19-107 (115)
274 2p58_C Putative type III secre 69.4 32 0.0011 25.6 11.7 88 371-463 20-107 (116)
275 3ltj_A Alpharep-4; protein eng 68.2 56 0.0019 27.8 18.4 80 189-272 26-105 (201)
276 4a1g_A Mitotic checkpoint seri 67.7 35 0.0012 27.8 8.9 80 513-595 53-135 (152)
277 4b4t_R RPN7, 26S proteasome re 66.9 50 0.0017 32.7 11.9 94 395-488 133-237 (429)
278 3ltm_A Alpha-REP4; protein eng 66.5 62 0.0021 27.8 17.8 47 191-237 33-79 (211)
279 1wdy_A 2-5A-dependent ribonucl 66.1 58 0.002 29.4 11.8 42 376-417 197-240 (285)
280 2wvi_A Mitotic checkpoint seri 62.4 51 0.0018 27.3 9.1 70 523-595 59-130 (164)
281 1k1a_A B-cell lymphoma 3-encod 62.0 76 0.0026 27.7 11.5 20 131-150 17-36 (241)
282 3esl_A Checkpoint serine/threo 60.5 70 0.0024 27.4 9.8 56 134-189 93-148 (202)
283 1wdy_A 2-5A-dependent ribonucl 57.0 58 0.002 29.3 10.0 210 94-316 7-240 (285)
284 1n11_A Ankyrin; clathrin, BAND 50.1 99 0.0034 30.3 11.0 174 229-420 18-203 (437)
285 2r9g_A AAA ATPase, central reg 49.6 1.2E+02 0.0042 25.8 10.0 65 326-391 14-86 (204)
286 3kae_A CDC27, possible protein 48.5 1.2E+02 0.004 25.3 8.8 76 508-586 46-139 (242)
287 2nsz_A Programmed cell death p 47.4 1E+02 0.0035 24.2 9.0 64 296-359 11-79 (129)
288 1oyz_A Hypothetical protein YI 47.4 1.6E+02 0.0055 26.5 20.1 239 86-370 34-279 (280)
289 2d2s_A Exocyst complex compone 47.0 63 0.0021 28.7 7.8 22 127-148 25-46 (235)
290 4b4t_S RPN3, 26S proteasome re 46.3 69 0.0024 32.3 8.6 25 122-146 233-257 (523)
291 4a1g_A Mitotic checkpoint seri 44.8 1.3E+02 0.0043 24.5 9.2 55 137-191 82-136 (152)
292 3jxi_A Vanilloid receptor-rela 44.5 35 0.0012 30.6 6.1 57 127-183 9-73 (260)
293 3eu9_A Huntingtin-interacting 44.5 1.1E+02 0.0037 26.5 9.4 50 97-151 14-66 (240)
294 3kea_A K1L; tropism, ANK repea 44.1 90 0.0031 28.5 9.0 119 469-596 102-223 (285)
295 2nsz_A Programmed cell death p 44.0 88 0.003 24.6 7.4 64 396-459 10-78 (129)
296 3kea_A K1L; tropism, ANK repea 43.9 95 0.0032 28.3 9.1 13 203-215 40-52 (285)
297 2ion_A PDCD4, programmed cell 43.2 99 0.0034 25.2 7.8 64 296-359 13-81 (152)
298 3bqo_A Telomeric repeat-bindin 42.0 1.4E+02 0.0049 25.4 8.4 71 511-581 94-171 (211)
299 2qx5_A Nucleoporin NIC96; mRNA 41.0 3.4E+02 0.012 28.4 15.9 27 47-73 155-181 (661)
300 3bge_A Predicted ATPase; struc 40.9 1E+02 0.0035 26.3 7.5 45 328-372 9-56 (201)
301 3mv2_A Coatomer subunit alpha; 40.1 2.3E+02 0.008 26.3 11.8 59 518-590 196-256 (325)
302 3ctd_A Putative ATPase, AAA fa 39.9 1.8E+02 0.0061 25.1 8.9 67 325-391 34-108 (213)
303 1bpo_A Protein (clathrin); cla 39.8 2.8E+02 0.0097 27.4 11.4 126 386-521 354-482 (494)
304 4b4t_S RPN3, 26S proteasome re 39.6 78 0.0027 31.9 7.8 59 459-521 231-296 (523)
305 1n11_A Ankyrin; clathrin, BAND 38.9 2E+02 0.007 27.9 11.3 360 196-589 16-401 (437)
306 1ya0_A SMG-7 transcript varian 38.6 92 0.0031 31.4 8.4 53 536-588 161-213 (497)
307 2wvi_A Mitotic checkpoint seri 38.5 1.7E+02 0.0057 24.2 9.8 57 137-193 77-133 (164)
308 2d2s_A Exocyst complex compone 38.2 1.3E+02 0.0043 26.7 8.3 27 391-417 89-115 (235)
309 1k1a_A B-cell lymphoma 3-encod 36.6 2.1E+02 0.0071 24.7 10.1 18 96-113 13-30 (241)
310 2ion_A PDCD4, programmed cell 36.1 77 0.0026 25.8 6.1 63 396-458 12-79 (152)
311 3hra_A Ankyrin repeat family p 35.9 1.5E+02 0.0051 24.8 8.6 179 198-382 9-199 (201)
312 3jxi_A Vanilloid receptor-rela 35.5 1.3E+02 0.0043 26.7 8.4 91 229-320 9-118 (260)
313 3i5p_A Nucleoporin NUP170; hel 35.1 3.7E+02 0.013 27.2 12.3 70 523-592 174-248 (525)
314 4aez_C MAD3, mitotic spindle c 35.0 1.2E+02 0.0041 26.5 7.3 50 545-594 132-183 (223)
315 4gq2_M Nucleoporin NUP120; bet 32.2 3.1E+02 0.01 30.4 12.0 86 465-556 816-926 (950)
316 4gq2_M Nucleoporin NUP120; bet 31.2 2.8E+02 0.0097 30.7 11.6 53 297-350 815-867 (950)
317 2pk8_A Uncharacterized protein 27.2 54 0.0019 23.7 3.1 24 619-642 14-37 (103)
318 4aez_C MAD3, mitotic spindle c 26.7 1.4E+02 0.0047 26.1 6.3 53 137-189 131-183 (223)
319 3qye_A TBC1 domain family memb 26.2 4E+02 0.014 24.8 10.9 47 243-289 209-255 (331)
320 2etb_A Transient receptor pote 26.0 1.2E+02 0.0041 26.8 6.4 90 127-217 6-113 (256)
321 3eu9_A Huntingtin-interacting 25.2 2E+02 0.0067 24.7 7.7 14 303-316 117-130 (240)
322 1ug3_A EIF4GI, eukaryotic prot 24.2 4.5E+02 0.015 24.7 10.5 25 225-249 14-38 (339)
323 2f6m_A Suppressor protein STP2 23.9 1.5E+02 0.0051 20.0 4.6 47 426-473 4-50 (65)
324 3ljn_A Hypothetical protein; a 23.3 2E+02 0.0068 27.1 7.8 215 261-484 21-266 (364)
325 2crb_A Nuclear receptor bindin 23.3 1E+02 0.0036 22.4 4.0 25 563-587 17-41 (97)
326 3ygs_P Procaspase 9; apoptosis 23.3 1E+02 0.0035 22.7 4.3 38 306-343 51-88 (97)
327 2fe3_A Peroxide operon regulat 21.5 2E+02 0.0069 22.9 6.2 59 450-510 13-71 (145)
328 2pnn_A Transient receptor pote 21.5 2.1E+02 0.0073 25.4 7.3 19 199-217 106-124 (273)
329 3e3v_A Regulatory protein RECX 21.5 3.5E+02 0.012 22.5 9.0 24 498-521 139-163 (177)
330 3eiq_C Programmed cell death p 21.2 5.3E+02 0.018 24.4 15.3 229 157-391 55-329 (358)
331 2p1h_A APAF-1, apoptotic prote 21.0 2.4E+02 0.0082 20.3 6.0 66 175-244 24-89 (94)
332 2xig_A Ferric uptake regulatio 20.6 2.8E+02 0.0094 22.3 6.9 67 137-205 9-75 (150)
333 3d9h_A CDNA FLJ77766, highly s 20.5 4E+02 0.014 23.9 9.0 62 88-154 11-86 (285)
334 3ygs_P Procaspase 9; apoptosis 20.3 85 0.0029 23.1 3.3 38 205-242 51-88 (97)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-40 Score=355.68 Aligned_cols=480 Identities=8% Similarity=-0.039 Sum_probs=403.1
Q ss_pred HhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHH
Q 037816 99 YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178 (648)
Q Consensus 99 ~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~ 178 (648)
+.+.|....+...+..++.+++..|+.++..|.+.|++++|+.+|++|.+.. |+.. ++..++.+|...|+++.|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHH
Confidence 4567778888888999888899999999999999999999999999998654 7777 899999999999999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC-------------------CcccHHHHHHHHHHCCCch
Q 037816 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-------------------NVITWTAVISGLVQNQLYE 239 (648)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 239 (648)
++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 678899999999999999999999999965433 3778999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHhhccCChHHH--HHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816 240 EGLKLFVKMHLGLINPNS-LTYLSSVMACSGLQALCEG--RQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315 (648)
Q Consensus 240 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 315 (648)
+|+++|++|.+.+ |+. ..+..+...+...+..+.+ ..+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998743 543 3444444444333322221 111 444444455556667788889999999999999999
Q ss_pred HhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 037816 316 EFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393 (648)
Q Consensus 316 ~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 393 (648)
+++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 788999999999999999999999999999876 4477889999999999999999999999999664 6788
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
.++..++..|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 999999999999999999999999875 4578899999999999999999999999999865 457889999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcC
Q 037816 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPD--VLVWQALLGACSIHG 541 (648)
Q Consensus 471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 541 (648)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 3457899999999999999999999999988 44787 789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++++|+..++++.+..|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999884
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-39 Score=349.68 Aligned_cols=479 Identities=7% Similarity=-0.037 Sum_probs=368.3
Q ss_pred CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--CCCc
Q 037816 43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDT 120 (648)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~ 120 (648)
+...++.++..|.+.|++++|..+++.+... .|+..++..++.+|.+.|++++|..+|+.+. .++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS 150 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccch
Confidence 6777899999999999999999999998876 6777888889999999999999999999884 5688
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHc---------------CCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLEL---------------GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC 185 (648)
Q Consensus 121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 185 (648)
.+++.++.+|.+.|++++|+.+|+++... |. |....++..++.++.+.|++++|..+++.+.+.
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999853221 11 122348889999999999999999999999887
Q ss_pred CCCCChhHHHHHHHHhHhcCChhHHHHH---hcccCC----CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh
Q 037816 186 GYEEEVTVGNALITSYFKCGSSSSGRKV---FGEMRV----RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL 258 (648)
Q Consensus 186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 258 (648)
+ +.+...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+. +++..
T Consensus 230 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 306 (597)
T 2xpi_A 230 D-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD 306 (597)
T ss_dssp C-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred C-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHH
Confidence 5 44556666666665544433322211 222222 23345666778888888889999998888654 57888
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHH
Q 037816 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQ 335 (648)
Q Consensus 259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 335 (648)
++..++.++.+.|++++|.++++.+.+.+ +.+..+++.++.+|.+.|++++|.++++.+.+ .+..+|+.++..|.+
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 88888889999999999999998888766 44777888899999999999999999988754 367788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (648)
.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++++.+.+.+
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------- 437 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------------------------- 437 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence 999999999999988753 2344555555555555555555555555544332
Q ss_pred HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCC
Q 037816 416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RIS 492 (648)
Q Consensus 416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~ 492 (648)
+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..
T Consensus 438 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 438 -----QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp -----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred -----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 2355666777777777777777777777777654 3467778888888888888888888888876632 446
Q ss_pred CC--hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816 493 PR--AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568 (648)
Q Consensus 493 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 568 (648)
|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|.+.|++++|.+.++++++.+|+++.++..++
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 66 678888899999999999999988887 3334 7889999999999999999999999999999999999999998
Q ss_pred HHHH
Q 037816 569 NIYS 572 (648)
Q Consensus 569 ~~~~ 572 (648)
.+|.
T Consensus 592 ~~~~ 595 (597)
T 2xpi_A 592 RALE 595 (597)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=7.6e-26 Score=230.17 Aligned_cols=372 Identities=14% Similarity=0.104 Sum_probs=256.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS 206 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 206 (648)
...+.+.|++++|+..++++.+.. |+....+..+...+...|+.+.|...++...+.. +.+...|..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 455677888888888888877664 6665455556666666777777777776666544 4455566666666666666
Q ss_pred hhHHHHHhcccC--CC-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHH
Q 037816 207 SSSGRKVFGEMR--VR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL 283 (648)
Q Consensus 207 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 283 (648)
+++|...|+++. .| +..+|..+...+.+.|++++|.+.|+++.+. .|+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-------------------------- 134 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDL-------------------------- 134 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTC--------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------------------------
Confidence 666666666553 22 2334555555566666666666655555432 2222
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHH
Q 037816 284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM 360 (648)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 360 (648)
...+..+...+...|++++|.+.|+++.. | +..+|..+...+...|++++|...|+++.+.+
T Consensus 135 --------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 199 (388)
T 1w3b_A 135 --------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD------- 199 (388)
T ss_dssp --------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------
T ss_pred --------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------
Confidence 22234444445555555555555544432 1 23344555555555555555555555555432
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 037816 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARH 437 (648)
Q Consensus 361 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 437 (648)
+.+...+..+...+...|++++|...|.+.. +.+..++..+..+|...
T Consensus 200 -----------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 200 -----------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred -----------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence 2334455556666666666666666666543 33566777888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517 (648)
Q Consensus 438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (648)
|++++|+..++++.+.+ +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|.+.
T Consensus 251 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp TCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988854 335778888999999999999999999999874 456888999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 518 IERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 518 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
++++ ...| +..++..+..++.+.|++++|+..++++++..|.++.+|..++.++...|+
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9988 5555 477899999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=3.3e-25 Score=225.49 Aligned_cols=354 Identities=13% Similarity=0.069 Sum_probs=298.7
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNS-LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 307 (648)
...+.+.|++++|++.++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45566778888888888777653 3443 344555556677788888888887777654 5667788889999999999
Q ss_pred HHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816 308 VEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI 384 (648)
Q Consensus 308 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 384 (648)
+++|.+.|+++.. | +..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999988764 3 34568888999999999999999999998864 334556677778888899999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816 385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT 461 (648)
Q Consensus 385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 461 (648)
.+.. +.+..++..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|...+++..+.. +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8875 5567889999999999999999999999875 3467789999999999999999999999998854 335788
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSI 539 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 539 (648)
+..+..++...|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.++++ ..+++..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999873 3446788999999999999999999999998 334568899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999873
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.8e-27 Score=242.24 Aligned_cols=183 Identities=16% Similarity=0.193 Sum_probs=158.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC---------hhHHHHHHHHHHHhCCCCchhH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---------LGLGKQIHSLIIKSDFTSNPFV 395 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 395 (648)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4666778888888888888888888888899999999999988876554 5778888999998899999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 471 (648)
|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999988885 578889999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999886 8999999999888887653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.5e-27 Score=243.94 Aligned_cols=211 Identities=10% Similarity=0.080 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhccc
Q 037816 138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217 (648)
Q Consensus 138 ~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (648)
.+..+.+++.+.++.+.....+..+|.+|++.|++++|..+++.|.+.|+.||..+||+||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455666777777655544478888999999999999999999999999999999999999998887764332
Q ss_pred CCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHH
Q 037816 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA 297 (648)
Q Consensus 218 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 297 (648)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12345678888999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc
Q 037816 298 LMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370 (648)
Q Consensus 298 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 370 (648)
+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888887777777777653 56677777777777777777777777777777777777777777777664
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.8e-23 Score=217.19 Aligned_cols=239 Identities=12% Similarity=-0.031 Sum_probs=135.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
.+..+...+...|++++|...|+++.+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666666543 225555556666666666666666666665543 334455556666666
Q ss_pred hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816 405 KCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF 481 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 481 (648)
..|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666665543 2244555556666666666666666666665542 22345555556666666666666666
Q ss_pred HHHhHHhcCCCCC----hhHHHHHHHHhhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 482 LKSMTEVHRISPR----AEHYACVVDMVGR---AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEK 552 (648)
Q Consensus 482 ~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (648)
++++.+...-.++ ...+..+...|.. .|++++|.+.++++ ...| +..++..+..++...|++++|...+++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6665543111111 2255666666666 66666666666655 2222 345555566666666666666666666
Q ss_pred HHhcCCCCCccHHHH
Q 037816 553 LFLAQPDSPAPYILM 567 (648)
Q Consensus 553 ~~~~~p~~~~~~~~l 567 (648)
+++..|.++..+..+
T Consensus 475 a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 475 SADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHCSSHHHHHHHH
T ss_pred HHHhccccHHHHHHH
Confidence 666666655444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.5e-23 Score=216.84 Aligned_cols=261 Identities=8% Similarity=-0.100 Sum_probs=223.5
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 037816 326 MTVILVGFAQ---NGFEEEAMQLFVKMVK-----AGI--------EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389 (648)
Q Consensus 326 ~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 389 (648)
+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|+++.|...++.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 3444444444 8999999999999987 311 22356777888889999999999999999998763
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 466 (648)
. ...+..+...|...|++++|...++.+.. .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 269 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 345 (514)
T 2gw1_A 269 R--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLA 345 (514)
T ss_dssp C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHH
T ss_pred c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHH
Confidence 3 88899999999999999999999988753 467789999999999999999999999999864 33667888899
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLVWQALLGACS 538 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~ 538 (648)
..+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ +..++ ...+..+..++.
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999874 3447788999999999999999999999987 22232 448889999999
Q ss_pred H---cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 539 I---HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 539 ~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
. .|++++|+..++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999999999999999999999998853
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=9.5e-22 Score=209.16 Aligned_cols=427 Identities=10% Similarity=0.027 Sum_probs=219.4
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 037816 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS 200 (648)
Q Consensus 121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 200 (648)
..|..+...+.+.|++++|+..|+++.+.. |+...++..+..++...|+++.|...++.+.+.+ +.+...+..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 445666667777777777777777777654 5555567777777777777777777777777655 4556677777777
Q ss_pred hHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC------CCCCChhhHHHHHHHhhccCChH
Q 037816 201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG------LINPNSLTYLSSVMACSGLQALC 274 (648)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~ 274 (648)
+...|++++|...|+.+. .+....+..+..+...+....|...++++... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 888888888888775332 22222233344455555567777777777442 12233222222 22222222
Q ss_pred HHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHHhccCCCcc----------cHHHHHHHHHH
Q 037816 275 EGRQIHGILWKLALQSD-LCIESALMDMYSKC--------GSVEDAWQIFEFAEELDGV----------SMTVILVGFAQ 335 (648)
Q Consensus 275 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~ 335 (648)
.+...+.... ...+. ......+...+... |++++|..+|+.+.+.++. ++..+...+..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 2221111100 00111 11222222222221 3566666666666543221 24444455666
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (648)
.|++++|...|++..+.. |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 666666666666666543 345555566666666666666666666665544 33455555556666666666666666
Q ss_pred HhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 037816 416 FSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492 (648)
Q Consensus 416 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 492 (648)
|+++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 55543 2234455555555556666666666665555542 2234455555555555566666666555554421000
Q ss_pred C----ChhHHHHHHHHhhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 493 P----RAEHYACVVDMVGRA----------GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 493 ~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
+ ....+..+...|.+. |++++|...|+++ ...| +...+..+..+|...|++++|+..++++++.
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1 111122333444444 5555555555554 2222 3444555555555555555555555555555
Q ss_pred CCCCC
Q 037816 557 QPDSP 561 (648)
Q Consensus 557 ~p~~~ 561 (648)
.|.+.
T Consensus 492 ~~~~~ 496 (537)
T 3fp2_A 492 ARTMD 496 (537)
T ss_dssp C--CH
T ss_pred CCCcH
Confidence 55543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=8.4e-21 Score=197.00 Aligned_cols=303 Identities=12% Similarity=0.028 Sum_probs=169.5
Q ss_pred cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS 303 (648)
Q Consensus 224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (648)
.+..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..+|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3444444444444444444444444331 11223334444444444444444444444444432 223344445555555
Q ss_pred hcCCHHHHHHHHHhccCCCc------ccHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816 304 KCGSVEDAWQIFEFAEELDG------VSMTVI------------LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365 (648)
Q Consensus 304 ~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 365 (648)
+.|++++|.+.|+.+.+.++ ..+..+ ...+...|++++|+..|+++.+.. +.+...+..+.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 55555555555555443221 222222 334667777777777777777653 34566666777
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHH------------
Q 037816 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSM------------ 430 (648)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l------------ 430 (648)
.++...|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++. +.+...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766553 4456666667777777777777777766654 2233333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPT-----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (648)
...+...|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++++.+. .+.+...+..+..+|
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 566666777777777777776632 43 235566666667777777777777776653 233566666777777
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037816 506 GRAGLLIEARSFIERM-PVKPD-VLVWQALL 534 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 534 (648)
...|++++|.+.++++ ...|+ ...+..+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 7777777777777666 44454 34444444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=5.9e-21 Score=198.19 Aligned_cols=325 Identities=11% Similarity=0.006 Sum_probs=275.7
Q ss_pred CChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHH
Q 037816 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILV 331 (648)
Q Consensus 255 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 331 (648)
.+...+..+...+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|+.+.+ .+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 345678888899999999999999999998764 55788999999999999999999999998875 35667888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHH------------HHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816 332 GFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAV------------LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV 395 (648)
Q Consensus 332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 395 (648)
+|...|++++|...|+++.+.. |+. ..+..+ ...+...|+++.|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999998864 443 455444 344888999999999999999875 567888
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL------- 465 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l------- 465 (648)
+..+..+|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..++++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 4578899999999999999999999999999754 2244444444
Q ss_pred -----HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 037816 466 -----LHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQAL 533 (648)
Q Consensus 466 -----l~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 533 (648)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|.+.++++ ...| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999874 343 457889999999999999999999997 4445 68899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH------------HHhcC-----ChHHHHHHHHHH
Q 037816 534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI------------YSCSG-----RWKERAKAIKRM 587 (648)
Q Consensus 534 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 587 (648)
..+|...|++++|+..++++++..|.++.++..++.+ |...| +.+++.+.++++
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999998843 55555 566777777763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.7e-20 Score=199.45 Aligned_cols=426 Identities=11% Similarity=0.046 Sum_probs=324.0
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816 88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS 164 (648)
Q Consensus 88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~ 164 (648)
....+..+...+.+.|++++|+..|+.+. ..+..+|..+..+|.+.|++++|+..|+++.+.+ |+...++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 35678888999999999999999999986 3478889999999999999999999999999876 777768999999
Q ss_pred HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC------CcccHHHHHHHHHHCCCc
Q 037816 165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR------NVITWTAVISGLVQNQLY 238 (648)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 238 (648)
++...|+++.|...++.+.. .|+. ....+..+...+....|...++.+... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999963322 2222 222344566666778888888887532 222344556667777777
Q ss_pred hHHHHHHHHHHhCCCCCChhhH-HHHHHHhhc--------cCChHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHH
Q 037816 239 EEGLKLFVKMHLGLINPNSLTY-LSSVMACSG--------LQALCEGRQIHGILWKLALQSD------LCIESALMDMYS 303 (648)
Q Consensus 239 ~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~ 303 (648)
+.+...+..... ..+....+ ..+...+.. .|++++|..+++.+.+...... ..++..+...+.
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 776665544332 12222222 222222222 2478889999988876542211 235677778899
Q ss_pred hcCCHHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816 304 KCGSVEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381 (648)
Q Consensus 304 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 381 (648)
..|++++|...|+.... |+...+..+...+...|++++|...|++..+.. +.+..++..+...+...|+++.|...+
T Consensus 255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999998865 556678888889999999999999999998875 456888999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----
Q 037816 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG---- 454 (648)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---- 454 (648)
+.+.+.. +.+...+..+...|...|++++|...|+++. +.+...+..+...+...|++++|...++++.+..
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 9999876 5567889999999999999999999998875 4467789999999999999999999999988643
Q ss_pred -CCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037816 455 -VEPTDVTFLSLLHACSHV----------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-P 522 (648)
Q Consensus 455 -~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 522 (648)
.......+......+... |++++|...++++.+. .+.+...+..+...|.+.|++++|.+.|++. .
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111222344555677777 9999999999999884 3447788999999999999999999999998 4
Q ss_pred CCCC
Q 037816 523 VKPD 526 (648)
Q Consensus 523 ~~p~ 526 (648)
..|+
T Consensus 491 ~~~~ 494 (537)
T 3fp2_A 491 LART 494 (537)
T ss_dssp HC--
T ss_pred hCCC
Confidence 4454
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.2e-18 Score=174.44 Aligned_cols=304 Identities=11% Similarity=0.012 Sum_probs=206.6
Q ss_pred hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 037816 258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFA 334 (648)
Q Consensus 258 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 334 (648)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+.+.+ .+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555566666666677766666666543 33455666666666666666666666665543 23345555666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816 335 QNGFEEEAMQLFVKMVKAGIEI----DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE 410 (648)
Q Consensus 335 ~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (648)
..|++++|...|++..+.. | +...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666665532 3 1222221111000 011222356777788888
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 411 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
+|...++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887764 3466777788888888888888888888888753 34677788888888888888888888888876
Q ss_pred hcCCCCChhHHH------------HHHHHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 037816 488 VHRISPRAEHYA------------CVVDMVGRAGLLIEARSFIERM-PVKPD-V----LVWQALLGACSIHGDSEMGKYA 549 (648)
Q Consensus 488 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~ 549 (648)
. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|+..
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 4 222333332 2366788899999999999887 33344 2 2345567788899999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++++++..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998774
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=5.1e-18 Score=169.98 Aligned_cols=324 Identities=10% Similarity=-0.005 Sum_probs=240.5
Q ss_pred CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 037816 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300 (648)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 300 (648)
|+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788899999999999999999997743 2456788888999999999999999999999875 446688999999
Q ss_pred HHHhcCCHHHHHHHHHhccCCCc---c---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816 301 MYSKCGSVEDAWQIFEFAEELDG---V---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374 (648)
Q Consensus 301 ~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 374 (648)
++...|++++|...|+.+.+.++ . .+..+...+ . ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999877444 2 222221000 0 11122233445555666
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMK 451 (648)
Q Consensus 375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 451 (648)
+.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666555543 4455666667777777777777777777654 2356677777788888888888888888887
Q ss_pred HcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHhhhcCCHHHHH
Q 037816 452 LEGVEPTDVTFL------------SLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVGRAGLLIEAR 515 (648)
Q Consensus 452 ~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 515 (648)
+.. +.+...+. .+...+...|++++|...++++.+. . +.+. ..+..+...|...|++++|.
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 753 22333332 2356688899999999999999875 2 2222 33556788999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 516 SFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 516 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
+.+++. ...| +...+..+..++...|++++|...++++++..|+++.++..+..+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999988 4344 688899999999999999999999999999999998888888777654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=7.3e-18 Score=166.74 Aligned_cols=287 Identities=9% Similarity=0.016 Sum_probs=211.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816 289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365 (648)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 365 (648)
+.+..++..+...+...|++++|.++|+.+.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 44455556666677777777777777776654 234455566677777778888888887777653 34556677777
Q ss_pred HHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH
Q 037816 366 GVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGF 441 (648)
Q Consensus 366 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 441 (648)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777888877777654 4456677778888888888888888887764 334566777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHhhhcCCHHHH
Q 037816 442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-------ISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 442 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
+|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+....++..+...|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888754 34567788888888888888888888888876411 133567888888888889999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH-HhcCChH
Q 037816 515 RSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY-SCSGRWK 578 (648)
Q Consensus 515 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 578 (648)
.+.+++. ...| +...+..+..++...|++++|...++++++..|+++.++..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9888887 3333 5677888888888899999999999999998898888888888887 4556543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=5.3e-15 Score=161.86 Aligned_cols=410 Identities=11% Similarity=0.046 Sum_probs=279.0
Q ss_pred cCCcchhHhhHhH---Hh-hccccCCCccCC-CCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCC
Q 037816 11 NSNFPFCSSLVSP---FI-TKIIQDPTSSTS-KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV 85 (648)
Q Consensus 11 ~~~~~~~~~l~~~---~~-~~~~~~~~~~~~-~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 85 (648)
..+..-|..+++- +. +..++..+.... .. +|.-....++++...|.+.+|.++++.+.-.-..|
T Consensus 950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~---~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~f-------- 1018 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQ---DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF-------- 1018 (1630)
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHhhccccc---CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc--------
Confidence 5777788887741 11 223333333222 33 44556788999999999999999999998441112
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~ 165 (648)
..+....+.|+.+..+. +..+..+..+....-+ ...+...+...|.+++|..+|++... ... ....++.
T Consensus 1019 s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~-A~~VLie- 1087 (1630)
T 1xi4_A 1019 SEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-----NTS-AVQVLIE- 1087 (1630)
T ss_pred cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHH-HHHHHHH-
Confidence 34567778788777766 4455555555554222 45577888889999999999998531 111 2233332
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHH
Q 037816 166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF 245 (648)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 245 (648)
..++++.|.++.+.. .+..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|++++|++.|
T Consensus 1088 --~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 --HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred --HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 567788888877754 35778899999999999999999999765 56678888999999999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc
Q 037816 246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS 325 (648)
Q Consensus 246 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 325 (648)
...++.. ++....+.++.+|++.++++....+.+ .++...+..+...|...|++++|..+|... ..
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~n 1223 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 1223 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hH
Confidence 8877644 443334458888888888886554431 345556667889999999999999999885 47
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816 326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405 (648)
Q Consensus 326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (648)
|..+..++.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHH
Confidence 888999999999999999998876 3457777777777777777766665432 33445566677777777
Q ss_pred CCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccCc
Q 037816 406 CGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARH--GNGFKALELYEEMKLEGVEP------TDVTFLSLLHACSHVGL 474 (648)
Q Consensus 406 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~--~~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~ 474 (648)
.|.+++|+.+++....- ....|+-|...|++- ++..++.+.|..-. +++| +...|..++..|.+.|+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 77887777777665432 334555555555543 22333333333211 1222 34456666666667777
Q ss_pred HHHHH
Q 037816 475 VNKGM 479 (648)
Q Consensus 475 ~~~A~ 479 (648)
++.|.
T Consensus 1371 ~dnA~ 1375 (1630)
T 1xi4_A 1371 YDNAI 1375 (1630)
T ss_pred HHHHH
Confidence 76666
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.4e-17 Score=163.03 Aligned_cols=265 Identities=10% Similarity=0.021 Sum_probs=231.9
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 037816 321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400 (648)
Q Consensus 321 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 400 (648)
.++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466677888889999999999999999998875 4455667777888899999999999999999875 56778899999
Q ss_pred HHHHhCC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816 401 NMYSKCG-DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476 (648)
Q Consensus 401 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (648)
..+...| ++++|...|++.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999875 3467789999999999999999999999999865 334667777899999999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCChHH
Q 037816 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV----------KPDVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 545 (648)
+|...++++.+. .+.+...+..+...|...|++++|...++++ .. ..+..++..+..++...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999873 4457889999999999999999999999887 11 3346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|+..++++++..|.++.++..++.++...|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988653
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=4.8e-15 Score=162.26 Aligned_cols=471 Identities=11% Similarity=0.061 Sum_probs=324.9
Q ss_pred HHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCC-hhHHHHhhccCCCCCcccHHHH
Q 037816 48 SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTM 126 (648)
Q Consensus 48 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~y~~l 126 (648)
.-|+..+-+..++.--.-.++.-... | ..++.++|+|...|...++ ++.-+. + |..-=..+
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~--g---------~~~~~~hnalakiyid~n~npe~fL~---~----n~~yd~~~ 904 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHE--G---------CEEPATHNALAKIYIDSNNNPERFLR---E----NPYYDSRV 904 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--C---------CCCHHHHHHHHHHHhccCCCHHHHhh---c----cCcccHHH
Confidence 33444444444444444445555555 5 5788999999999987653 333222 1 22211223
Q ss_pred HHHHHhcCCchHHHHHHHH------HHHcCCCCCcHhHHHHHHHHhhccCChHH-----------HHHHHHHHHHhCC--
Q 037816 127 VSGFLRNGEFDMGFGFFKR------SLELGFYQLDQASFTIILSACDRSELSLV-----------SKMIHCLVYLCGY-- 187 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~------m~~~~~~p~~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~-- 187 (648)
+.-||...++--|.-.|++ +.+ +.-.+. .|....+-+.+..+.+. -+++.++.....+
T Consensus 905 vgkyce~rDp~la~iay~~g~~d~eli~--vt~~n~-l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e 981 (1630)
T 1xi4_A 905 VGKYCEKRDPHLACVAYERGQCDLELIN--VCNENS-LFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE 981 (1630)
T ss_pred HHHHHHhcCcchHHHHhcccCCcHHHHH--HHhcch-hHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence 3445555555544444432 000 011111 33333333333333332 2334444333222
Q ss_pred CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C-----CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH
Q 037816 188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R-----NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL 261 (648)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~ 261 (648)
..++.--...+.+|...|.+.+|+++++++.. + +...-+.++....+. +..+..+..+.... ....
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHH
Confidence 23344446677888899999999999988862 2 224456677666666 55666666665532 1133
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHH
Q 037816 262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341 (648)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 341 (648)
.+...+...|.+++|..+|+.... .....+.+ +-..+++++|.++.+++. ++.+|..+..++.+.|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHH
Confidence 467778889999999999988631 11111222 337789999999998774 46788899999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 037816 342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP 421 (648)
Q Consensus 342 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (648)
|++.|.+. -|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence 99999663 577888889999999999999999999888765 44444446899999999998755553 45
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816 422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV 501 (648)
Q Consensus 422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 501 (648)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev 1256 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 1256 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHH
Confidence 56677778999999999999999999985 47889999999999999999999887 345889999
Q ss_pred HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc--CChHH
Q 037816 502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWKE 579 (648)
Q Consensus 502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~ 579 (648)
..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.++.++|.....|..++.+|++. ++..+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987765 4456667778999999999999999999999999999988998888887754 55666
Q ss_pred HHHHHHH
Q 037816 580 RAKAIKR 586 (648)
Q Consensus 580 A~~~~~~ 586 (648)
+.++|..
T Consensus 1335 hlk~f~~ 1341 (1630)
T 1xi4_A 1335 HLELFWS 1341 (1630)
T ss_pred HHHHHHH
Confidence 6666553
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=1.8e-17 Score=166.87 Aligned_cols=282 Identities=11% Similarity=-0.028 Sum_probs=224.2
Q ss_pred HHhcCCHHHHHH-HHHhccCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC
Q 037816 302 YSKCGSVEDAWQ-IFEFAEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS 373 (648)
Q Consensus 302 ~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 373 (648)
+.-.|++++|.+ .|++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 77765431 34567888888999999999999999998864 5567788888888999999
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHH---------------HHHHHH
Q 037816 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNS---------------MIAAFA 435 (648)
Q Consensus 374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~ 435 (648)
++.|...++.+.+.. +.+..++..+...|...|++++|...|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999988876 56778888899999999999999999987652 2 2222221 233344
Q ss_pred HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 436 RHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
..|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999999865211 4788999999999999999999999999874 344688999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CccHHHHHHHHHhcCChHHHH
Q 037816 515 RSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-----------PAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 515 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 581 (648)
.+.++++ ...| +...+..+..+|...|++++|+..++++++..|.+ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998 4444 57889999999999999999999999999988877 789999999999999999999
Q ss_pred HHHHHH
Q 037816 582 KAIKRM 587 (648)
Q Consensus 582 ~~~~~m 587 (648)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1e-15 Score=160.27 Aligned_cols=365 Identities=10% Similarity=0.004 Sum_probs=271.2
Q ss_pred ChhHHHHHHHHhHh----cCChhHHHHHhcccCC-CCcccHHHHHHHHHH----CCCchHHHHHHHHHHhCCCCCChhhH
Q 037816 190 EVTVGNALITSYFK----CGSSSSGRKVFGEMRV-RNVITWTAVISGLVQ----NQLYEEGLKLFVKMHLGLINPNSLTY 260 (648)
Q Consensus 190 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~ 260 (648)
+...+..+...|.. .+++++|...|+...+ .+...+..|...|.. .+++++|+++|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45555556666665 6777777777766543 345566666677776 777777777777776643 44455
Q ss_pred HHHHHHhhc----cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHH
Q 037816 261 LSSVMACSG----LQALCEGRQIHGILWKLALQSDLCIESALMDMYSK----CGSVEDAWQIFEFAEE-LDGVSMTVILV 331 (648)
Q Consensus 261 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~ 331 (648)
..+...+.. .+++++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .++..+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555 667778888777777665 45556667777776 6788888888877655 35666777777
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037816 332 GFAQ----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403 (648)
Q Consensus 332 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (648)
.|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..+++...+.| ++..+..+...|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7777 788899999998888765 45566666666664 788899999998888765 345666677777
Q ss_pred Hh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816 404 SK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARH-----GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473 (648)
Q Consensus 404 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 473 (648)
.. .+++++|...|++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8899999999988764 4667777888888877 89999999999998865 4556666777776655
Q ss_pred ---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 037816 474 ---LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGACSI----HGD 542 (648)
Q Consensus 474 ---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 542 (648)
++++|.++|++..+. .++..+..|...|.. .+++++|.+.|++.-...++..+..|...|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 889999999999874 467788888999988 89999999999988223367788888888888 899
Q ss_pred hHHHHHHHHHHHhcCCC---CCccHHHHHHHHHh
Q 037816 543 SEMGKYAAEKLFLAQPD---SPAPYILMANIYSC 573 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 573 (648)
.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999998854 66666666665543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.9e-15 Score=159.89 Aligned_cols=421 Identities=10% Similarity=-0.015 Sum_probs=272.7
Q ss_pred HHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--C
Q 037816 143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--R 220 (648)
Q Consensus 143 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~ 220 (648)
|++..+.. |.+...|..++.. ...|+.+.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|++... |
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 44444443 6666577777764 56777888888888777643 55666777777777777888888888877753 5
Q ss_pred CcccHHHHHHHH-HHCCCchHHHH----HHHHHHh-CCCCCC-hhhHHHHHHHhhc---------cCChHHHHHHHHHHH
Q 037816 221 NVITWTAVISGL-VQNQLYEEGLK----LFVKMHL-GLINPN-SLTYLSSVMACSG---------LQALCEGRQIHGILW 284 (648)
Q Consensus 221 ~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~ 284 (648)
+...|...+... ...|++++|.+ +|+.... .|..|+ ...|...+..... .|+++.|..+|+..+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 555555555422 34566666654 5555533 244443 3344444443322 456666666666665
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH------HcC---CC
Q 037816 285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV------KAG---IE 355 (648)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~ 355 (648)
+.........|..........+. ..+..++. ...+++..|..++.++. +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 52111111222222111100000 00111110 02344556666555532 111 24
Q ss_pred cCH--------HHHHHHHHHHhc----cCCh----hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------CCCHH--
Q 037816 356 IDP--------NMVSAVLGVFGV----DTSL----GLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-------CGDLE-- 410 (648)
Q Consensus 356 p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-- 410 (648)
|+. ..|...+..... .++. ..+..+|+++.... +.++..|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 431 344443332221 1232 36777888888763 5677888888888775 78887
Q ss_pred -----HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHHHHH
Q 037816 411 -----DSIKVFSRMAP---R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-D-VTFLSLLHACSHVGLVNKGM 479 (648)
Q Consensus 411 -----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~ 479 (648)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999988763 3 5778999999999999999999999999984 464 3 47888888888999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDM-VGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
.+|++..+. .+.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++..
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999873 22234444333322 34689999999999987 3344 5788999999999999999999999999998
Q ss_pred CCCCCc----cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 557 QPDSPA----PYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 557 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.|.++. +|...+......|+.+.+..+.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 876665 7778888888899999999999998764
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.5e-17 Score=161.99 Aligned_cols=347 Identities=10% Similarity=-0.001 Sum_probs=158.9
Q ss_pred hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHH
Q 037816 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282 (648)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 282 (648)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5678889999998886554 8889999999999999999988653 6777888889999889999999997777
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362 (648)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 362 (648)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6663 44567788899999999999998877753 66778999999999999999999999876 3788
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 037816 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK 442 (648)
Q Consensus 363 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 442 (648)
.+..++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8999999999999999998887 378899999999999999999988777655 344445568889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHhhhcCCHHHHHH
Q 037816 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP------RAEHYACVVDMVGRAGLLIEARS 516 (648)
Q Consensus 443 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 516 (648)
|..+++...... +--...|+-+.-++++- ++++..+.++....+-+++| +...|..++-.|...++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999988654 34556666666655543 34444444444333335555 57789999999999999999988
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 517 FIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 517 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
..-+- +..-+... ......+..+.|---+...-.++.. |...+.+..++...=+...+++.+++
T Consensus 304 tm~~h~~~a~~~~~---f~~~~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 304 TMMNHPTDAWKEGQ---FKDIITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHSTTTTCCHHH---HHHHHHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHhCChhhhhhHH---HHHHHhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 76554 22112222 2233334444442222222222222 23455555555555555555544443
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.8e-17 Score=163.10 Aligned_cols=284 Identities=9% Similarity=0.055 Sum_probs=119.4
Q ss_pred cCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHH
Q 037816 101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180 (648)
Q Consensus 101 ~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~ 180 (648)
+.|++++|.++++++..| .+|..|..++.+.|++++|++.|.+. ++.. +|..++.++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~-~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS-SYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHH-HHHHHHHHHHhCCCHHHHHHHHH
Confidence 678899999999999665 48999999999999999999999753 4555 89999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH
Q 037816 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY 260 (648)
Q Consensus 181 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 260 (648)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678889999999999999999988864 77789999999999999999999999977 368
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHH
Q 037816 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340 (648)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 340 (648)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888888888888888888877 367888888888888888888877666654 33344456777888888888
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcc--CChhHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhCCCHHHH
Q 037816 341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHSLIIKSDFTS------NPFVNNGLINMYSKCGDLEDS 412 (648)
Q Consensus 341 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A 412 (648)
+|+.+++...... +-....|+-+..++++- +++.+..+.|. .+.+++| +...|.-++..|...++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 8888888876544 44455566555555543 22333333222 1222222 345566666666677777666
Q ss_pred HHHHh
Q 037816 413 IKVFS 417 (648)
Q Consensus 413 ~~~~~ 417 (648)
..+.-
T Consensus 302 ~~tm~ 306 (449)
T 1b89_A 302 IITMM 306 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3e-17 Score=165.00 Aligned_cols=261 Identities=10% Similarity=-0.072 Sum_probs=214.7
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN 401 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 401 (648)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888888999999999999999998865 4567888889999999999999999999988875 556788899999
Q ss_pred HHHhCCCHHHHHHHHhhcCC--C-C----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 037816 402 MYSKCGDLEDSIKVFSRMAP--R-N----------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-PTDVTFLSLLH 467 (648)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~ 467 (648)
+|...|++++|...|+++.+ | + ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988753 1 1 223344578889999999999999999986521 15889999999
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 545 (648)
.+...|++++|...++++.+. .+.+..++..+..+|...|++++|.+.|+++ ...| +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999884 3457889999999999999999999999988 4445 48889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 546 GKYAAEKLFLAQPD------------SPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 546 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
|+..++++++..|. +..++..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988776 367899999999999999999887665
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=7.5e-15 Score=153.63 Aligned_cols=353 Identities=13% Similarity=0.032 Sum_probs=294.9
Q ss_pred CCcccHHHHHHHHHH----CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc----cCChHHHHHHHHHHHHhcCCCc
Q 037816 220 RNVITWTAVISGLVQ----NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG----LQALCEGRQIHGILWKLALQSD 291 (648)
Q Consensus 220 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 291 (648)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677778888888 899999999999998754 55667777777777 899999999999998876 5
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHHhccCC-CcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816 292 LCIESALMDMYSK----CGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQ----NGFEEEAMQLFVKMVKAGIEIDPNMVS 362 (648)
Q Consensus 292 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 362 (648)
...+..|...|.. .+++++|..+|+...+. ++..+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 78999999999987664 56677778888887 789999999999999875 567777
Q ss_pred HHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHH
Q 037816 363 AVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAA 433 (648)
Q Consensus 363 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 433 (648)
.+...+.. .++.++|..+++...+.| ++..+..+...|.. .+++++|...|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 899999999999998875 45677778888886 8899999999998764 466777788888
Q ss_pred HHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 434 FAR----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV-----GLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 434 ~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
|.. .+++++|+..|++..+.| +...+..+...+... +++++|...+++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 888 899999999999998765 556667777777776 8999999999999874 3 55677888888
Q ss_pred hhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----
Q 037816 505 VGRAG---LLIEARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC---- 573 (648)
Q Consensus 505 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 573 (648)
|...| ++++|.+.|++.-...++..+..|...|.. .+++++|+..++++.+.+ ++.++..++.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999988223578889999999998 899999999999998864 57799999999998
Q ss_pred cCChHHHHHHHHHHHhCCCC
Q 037816 574 SGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 574 ~g~~~~A~~~~~~m~~~~~~ 593 (648)
.+++++|..++++..+.+..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999998743
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=5.9e-15 Score=156.11 Aligned_cols=407 Identities=9% Similarity=0.063 Sum_probs=288.0
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 037816 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI 198 (648)
Q Consensus 119 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 198 (648)
|...|..++. +.+.|++++|..+|+++.+.. |+....|...+..+.+.|+.+.|..+++..++.. |+...|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6778999998 578999999999999999864 8887789999999999999999999999998764 6777887777
Q ss_pred HHh-HhcCChhHHHH----HhcccC-----C-CCcccHHHHHHHHHH---------CCCchHHHHHHHHHHhCCCCCCh-
Q 037816 199 TSY-FKCGSSSSGRK----VFGEMR-----V-RNVITWTAVISGLVQ---------NQLYEEGLKLFVKMHLGLINPNS- 257 (648)
Q Consensus 199 ~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~- 257 (648)
... ...|+.+.|.+ +|+... . ++...|...+..... .|+++.|..+|++..+. |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 543 34677777665 666542 1 245677777776655 68899999999999872 432
Q ss_pred --hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh-------ccC------CC
Q 037816 258 --LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-------AEE------LD 322 (648)
Q Consensus 258 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~------~~ 322 (648)
..|..........+. ..+.. ++. .+.+++..|..++.. +.. |+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222221111100010 00111 110 012334444444432 111 11
Q ss_pred --------cccHHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc-------cCChh----
Q 037816 323 --------GVSMTVILVGFAQN----GFE----EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-------DTSLG---- 375 (648)
Q Consensus 323 --------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~---- 375 (648)
...|...+...... ++. +.+..+|++..... +.+...|......+.+ .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 12333333222221 222 47778888888763 4567777777777664 68887
Q ss_pred ---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CC-Ch-hHHHHHHHHHHHcCChHHHHHHHH
Q 037816 376 ---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PR-NS-VSWNSMIAAFARHGNGFKALELYE 448 (648)
Q Consensus 376 ---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~ 448 (648)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999998874346678899999999999999999999999875 33 33 478888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CC
Q 037816 449 EMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PV 523 (648)
Q Consensus 449 ~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 523 (648)
+..+.. +.+...|...... +...|++++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|++. +.
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 998753 2233333332222 33589999999999999885 2347889999999999999999999999998 22
Q ss_pred CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 524 KPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 524 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
.|+ ...|...+......|+.+.+..+.+++.+..|.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 332 457888888888999999999999999998884
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.5e-15 Score=146.57 Aligned_cols=270 Identities=6% Similarity=-0.061 Sum_probs=218.2
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCcc----cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816 300 DMYSKCGSVEDAWQIFEFAEELDGV----SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 375 (648)
+-....|++..|++.++.....++. ....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 4456779999999999887664432 345577899999999999987755 24677788888999999999999
Q ss_pred HHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816 376 LGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454 (648)
Q Consensus 376 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 454 (648)
.|.+.++.+...+. |.++..+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.++++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999999988774 55667777888999999999999999998 5678899999999999999999999999999864
Q ss_pred CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 037816 455 VEPTDVTF---LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLV 529 (648)
Q Consensus 455 ~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 529 (648)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 654321 22334455669999999999999984 5568899999999999999999999999997 4445 5788
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816 530 WQALLGACSIHGDSEM-GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA 583 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 583 (648)
+..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999999876 5789999999999997544 345555556655543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.2e-16 Score=157.71 Aligned_cols=258 Identities=10% Similarity=-0.043 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555666666666666666665543 3345555566666666666666666666666553 445556666666667
Q ss_pred hCCCHHHHHHHHhhcCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816 405 KCGDLEDSIKVFSRMAP---RNSVSWNSM--------------IA-AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 466 (648)
..|++++|...++++.. .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 77777777766665532 122222222 22 3667889999999999999865 34778899999
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 544 (648)
..+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.++++ ...| +...+..+..++...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999874 3446888999999999999999999999987 3334 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 545 MGKYAAEKLFLAQPD------------SPAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
+|...++++++..|. ++.++..++.++...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999998 6889999999999999999999988754
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=7.8e-16 Score=160.57 Aligned_cols=281 Identities=9% Similarity=0.012 Sum_probs=154.1
Q ss_pred CHHHHHHHHHhccC--C-CcccHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh----ccCChhH
Q 037816 307 SVEDAWQIFEFAEE--L-DGVSMTVILVG---FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGL 376 (648)
Q Consensus 307 ~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~ 376 (648)
++++|.+.|++..+ | ++..+..+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..++.+.
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 45555555555443 2 22222222222 234455566666666655543 223334433333332 2345566
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH-----------------
Q 037816 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFAR----------------- 436 (648)
Q Consensus 377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~----------------- 436 (648)
|..+++...... +.+..++..+...|...|++++|...|.+.. +.+..++..+..+|..
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 666666665544 4455556666666666666666666666553 2234444444443321
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HhhhcCCH
Q 037816 437 --HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVD-MVGRAGLL 511 (648)
Q Consensus 437 --~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~ 511 (648)
.+.++.|...+++..+.. +.+..++..+...+...|++++|...|+++.+. ...+.. ..+..+.. .+...|++
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCH
Confidence 234567888888877754 334556777888899999999999999998763 322221 12333332 23467899
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 512 IEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 512 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++|++.|++. .+.|+...... ....+..++++.++.+|.++.+|..++.+|...|++++|++.|++.++.
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999887 66676543322 2344566788888999999999999999999999999999999999987
Q ss_pred CCCCCCceeE
Q 037816 591 GVDKETGISW 600 (648)
Q Consensus 591 ~~~~~~~~~~ 600 (648)
|...+...+|
T Consensus 460 ~~~~p~a~~~ 469 (472)
T 4g1t_A 460 GSLIPSASSW 469 (472)
T ss_dssp ----------
T ss_pred CCCCCcHhhc
Confidence 7655444444
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3e-16 Score=157.79 Aligned_cols=146 Identities=12% Similarity=-0.001 Sum_probs=74.8
Q ss_pred hCCCHHHHHHHHhhcC--CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816 405 KCGDLEDSIKVFSRMA--PR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 479 (648)
..|++++|...|+++. .| +..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444444432 11 23444555555555555555555555555432 223445555555555555555555
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCChHHH
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP------------DVLVWQALLGACSIHGDSEMG 546 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A 546 (648)
..++++.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| ...+|..+..++...|+.++|
T Consensus 272 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 272 AAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 555555542 1224455555555555555555555555554 1111 145566666666666666666
Q ss_pred HHHHHHH
Q 037816 547 KYAAEKL 553 (648)
Q Consensus 547 ~~~~~~~ 553 (648)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 6655544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=5.1e-16 Score=149.75 Aligned_cols=247 Identities=10% Similarity=0.049 Sum_probs=204.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDP--NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG 407 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (648)
++.....|++..|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567889999999998876443 3443 3556678899999999999876644 24677888899999999999
Q ss_pred CHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816 408 DLEDSIKVFSRMA----PR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482 (648)
Q Consensus 408 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 482 (648)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777788999999999999999987 467888999999999999999999999
Q ss_pred HHhHHhcCCCCChhH---HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816 483 KSMTEVHRISPRAEH---YACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 483 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 557 (648)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999885 354321 123445555669999999999998 334578889999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037816 558 PDSPAPYILMANIYSCSGRWKE-RAKAIKRMKEMG 591 (648)
Q Consensus 558 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 591 (648)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999987743
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.8e-16 Score=155.09 Aligned_cols=232 Identities=12% Similarity=0.009 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 037816 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAA 433 (648)
Q Consensus 357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 433 (648)
+...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999876 6678899999999999999999999999875 4468899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTD-----------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 502 (648)
|...|++++|...++++.+.. |+. ..+..+...+...|++++|...++++.+...-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 432 2233457788999999999999999998522222688999999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 580 (648)
..|...|++++|.+.++++ ...| +..+|..+..+|...|++++|+..++++++..|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 3344 5888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 037816 581 AKAIKRMKEMG 591 (648)
Q Consensus 581 ~~~~~~m~~~~ 591 (648)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998743
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.1e-15 Score=150.73 Aligned_cols=272 Identities=8% Similarity=-0.053 Sum_probs=156.1
Q ss_pred hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHH
Q 037816 259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQ 335 (648)
Q Consensus 259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 335 (648)
.+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 34455555556666666666666665543 23444555555555555555555555555433 133344445555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH-HH-HHHhCCCHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL-IN-MYSKCGDLEDSI 413 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~ 413 (648)
.|++++|...++++..... .+...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 5555555555555554321 111111111000 0000000011 11 255566667777
Q ss_pred HHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816 414 KVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR 490 (648)
Q Consensus 414 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 490 (648)
..++++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 235 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-- 235 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 7666654 2355667777777777777777777777777653 335667777777777777888888877777663
Q ss_pred CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
.+.+...+..+...|.+.|++++|.+.++++ ...|+ ...|..+..++...|++++|..+++++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 2335667777777777888888888777766 22232 566777777888888888888877766544
Q ss_pred C
Q 037816 557 Q 557 (648)
Q Consensus 557 ~ 557 (648)
.
T Consensus 316 ~ 316 (327)
T 3cv0_A 316 F 316 (327)
T ss_dssp H
T ss_pred c
Confidence 3
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.6e-14 Score=150.62 Aligned_cols=379 Identities=8% Similarity=-0.043 Sum_probs=188.7
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHhHhcCChhHHHHHhcccCC-------C--
Q 037816 158 SFTIILSACDRSELSLVSKMIHCLVYLC-----G---YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-------R-- 220 (648)
Q Consensus 158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 220 (648)
.|+.|...+...|+.++|...++..++. + -+....+|+.+..+|...|++++|...+++... +
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 5666666777777777777776665442 0 122234566677777777777777666655421 1
Q ss_pred --CcccHHHHHHHHHH--CCCchHHHHHHHHHHhCCCCCChh-hHHHHHHH---hhccCChHHHHHHHHHHHHhcCCCch
Q 037816 221 --NVITWTAVISGLVQ--NQLYEEGLKLFVKMHLGLINPNSL-TYLSSVMA---CSGLQALCEGRQIHGILWKLALQSDL 292 (648)
Q Consensus 221 --~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~ 292 (648)
...++..+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.++|.+.++...+.. +.+.
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 12234444334433 34566777777766542 34432 22222222 233455556666666655543 2233
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816 293 CIESALMDMYSK----CGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL 365 (648)
Q Consensus 293 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 365 (648)
.++..+...+.. .++.++|.+++++... .+...+..+...|...|++++|+..+++..+.. +-+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 334333333332 2345555555554432 233445555556666666666666666655542 22333333333
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK 442 (648)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 442 (648)
.++...+.. ..... ...........+.++.|...|+... +.+..++..+...|...|++++
T Consensus 289 ~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 322110000 00000 0000000111223566777776653 4466788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816 443 ALELYEEMKLEGVEPTDV--TFLSLLH-ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519 (648)
Q Consensus 443 A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 519 (648)
|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence 999999999865333221 2222222 23578999999999999876 35544332222 223334444
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816 520 RM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568 (648)
Q Consensus 520 ~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 568 (648)
+. .. +.+..+|..+..+|...|++++|++.|+++++..|.+|.+..-++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 43 22 345778999999999999999999999999999998887766554
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=8.3e-15 Score=134.89 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=158.5
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 466 (648)
|++...+..+...+.+.|++++|...|++.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 5677788888889999999999999998765 3467788889999999999999999999999864 33677888888
Q ss_pred HHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037816 467 HACSHV-----------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALL 534 (648)
Q Consensus 467 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 534 (648)
.++... |++++|...+++..+. -+-+...+..+..+|...|++++|++.|++. ....++..+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 899999 9999999999999874 2336788999999999999999999999988 2227888999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
.++...|++++|+..++++++..|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988753
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.5e-14 Score=135.59 Aligned_cols=217 Identities=13% Similarity=0.024 Sum_probs=161.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----C----hhHHHHH
Q 037816 361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R----N----SVSWNSM 430 (648)
Q Consensus 361 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 430 (648)
+..+...+...|++++|..+++.+.+.. .+...+..+..+|...|++++|...+.+..+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444445555555555555554444 4445555555566666666666666555432 1 1 4667778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816 431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 510 (648)
...+...|++++|...+++..+.. |+. ..+...|++++|...++++.. ..+.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 888888888888888888888743 553 345666888999999998876 233367788889999999999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 511 LIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+++|.+.++++ ... .+...+..+..++...|++++|+..++++++..|.++.++..++.++...|++++|.+.+++..
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999887 333 3578888999999999999999999999999999999999999999999999999999999987
Q ss_pred hC
Q 037816 589 EM 590 (648)
Q Consensus 589 ~~ 590 (648)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=7.5e-16 Score=163.45 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=119.2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAE-------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362 (648)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 362 (648)
.-..+|++||++||+.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345578888888888888888888886653 4788999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHH
Q 037816 363 AVLGVFGVDTSL-GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----NSVSWNSMIAAFAR 436 (648)
Q Consensus 363 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~ 436 (648)
++|.++|+.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ .+.+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999998877765555555554444321 13344445555554
Q ss_pred cC
Q 037816 437 HG 438 (648)
Q Consensus 437 ~~ 438 (648)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.7e-14 Score=135.45 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=176.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCc----hhHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSN----PFVNNG 398 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 398 (648)
.+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34555666667777777777777776665 5666677777777777777777777776665321 111 467777
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816 399 LINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476 (648)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (648)
+...|...|++++|...|++..+ ++ ...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 88888888888888888877653 33 234666788899999999988853 224567788888899999999
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
+|...++++.+. .+.+..++..+...|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999874 3447888999999999999999999999988 3344 47888899999999999999999999999
Q ss_pred hcC------CCCCccHHHHHH
Q 037816 555 LAQ------PDSPAPYILMAN 569 (648)
Q Consensus 555 ~~~------p~~~~~~~~l~~ 569 (648)
+.. |.+..++..+..
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHH
T ss_pred HhChhhcCCCchHHHHHHHHH
Confidence 888 777666665554
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=6.2e-14 Score=134.40 Aligned_cols=241 Identities=10% Similarity=-0.050 Sum_probs=186.8
Q ss_pred HcCCHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 037816 335 QNGFEEEAMQLFVKMVKAGI---EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED 411 (648)
Q Consensus 335 ~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (648)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34677788888888776532 1235667777777888888888888888887765 4567788888888999999999
Q ss_pred HHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 412 SIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 412 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
|...|+++. +.+...+..+...|...|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988775 3467888999999999999999999999999854 65555555556667789999999999888874
Q ss_pred cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+..+|...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34454444 4777888888999999999887 33332 577888999999999999999999999999998754
Q ss_pred cHHHHHHHHHhcCChHHHHHHH
Q 037816 563 PYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
.+ +.++...|++++|++.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 56788889999998876
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=162.50 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA-------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS 464 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 464 (648)
-..+|++||++||+.|++++|.++|.+|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34566666666666666666666665542 46777777777777777777777777777777777777777777
Q ss_pred HHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 465 LLHACSHVGL-VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 465 ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
+|.++++.|+ .+.|.++|++|.+. |+.||..+|++++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence 7777777766 45677777777775 7777777777766555544
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=9e-14 Score=133.07 Aligned_cols=246 Identities=11% Similarity=-0.026 Sum_probs=127.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHh
Q 037816 295 ESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID--PNMVSAVLGVFG 369 (648)
Q Consensus 295 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~ 369 (648)
+......+...|++++|...|+...+ .+...+..+..++...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455556666666666666665543 2333555566666666666666666666655221111 122444444555
Q ss_pred ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449 (648)
Q Consensus 370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 449 (648)
..|++++|...++...+.. +.+..++..+...|.. .|++++|+..+++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~-------------------------------~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYN-------------------------------KGNFPLAIQYMEK 133 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH-------------------------------TTCHHHHHHHHGG
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH-------------------------------ccCHHHHHHHHHH
Confidence 5555555555555554433 2233444444444444 4444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC---HHHHHHHHHhC----C
Q 037816 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL---LIEARSFIERM----P 522 (648)
Q Consensus 450 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~ 522 (648)
..+.. +.+...+..+...+...+++++|...++++.+. .+.+...+..+...+...|+ +++|...+++. .
T Consensus 134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 44321 113333333331222233555555555555442 12234444445555554454 44444444443 1
Q ss_pred CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816 523 VKPD------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575 (648)
Q Consensus 523 ~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 575 (648)
..|+ ...|..+...|...|++++|+..++++++.+|+++.+...+.......+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 1122 2467778888889999999999999999999999888877766655443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=5.6e-13 Score=137.20 Aligned_cols=374 Identities=10% Similarity=0.006 Sum_probs=195.9
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh---hHHHHHhcccCCCCcccHHHHHHHHHHCC-----Cc
Q 037816 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS---SSGRKVFGEMRVRNVITWTAVISGLVQNQ-----LY 238 (648)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 238 (648)
.+.|++++|..+++...+.| +...+..|...|...|+. ++|...|+...+.+...+..|...+...+ ++
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence 33444444444444444443 122223344444555666 77777777776556666666666555554 66
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHH---HHHHHHHHHHhcCCCchhHHHHHHHHHHhcC----CHHHH
Q 037816 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE---GRQIHGILWKLALQSDLCIESALMDMYSKCG----SVEDA 311 (648)
Q Consensus 239 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A 311 (648)
++|+..|++..+.|... .+..+...+...+..+. +.+.+......| +......|...|...+ +.+.+
T Consensus 91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 78888888877754322 44445555544433222 333333333333 2344455666666665 34445
Q ss_pred HHHHHhccCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816 312 WQIFEFAEELDGVSMTVILVGFAQNG---FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388 (648)
Q Consensus 312 ~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 388 (648)
..+++.....++..+..+...|...| +.++|+..|++..+.| .++...+..+...|...
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g----------------- 226 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA----------------- 226 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG-----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-----------------
Confidence 55555555555556666666666666 6667777776666665 33333323333333222
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037816 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA-F--ARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465 (648)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 465 (648)
....+++++|...|+...+.+...+..|... + ...+++++|+..|++..+.| +...+..+
T Consensus 227 --------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 227 --------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp --------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred --------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 0001455555555555442244455555544 2 34677888888888877765 55566666
Q ss_pred HHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037816 466 LHACSHVG-----LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGA 536 (648)
Q Consensus 466 l~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 536 (648)
...|. .| ++++|..+|++.. +-++..+..|...|.. ..++++|...|++.-..-+......|...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 66665 44 8888888888774 3466677777777765 34888888888877222234445556666
Q ss_pred HHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 537 CSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 537 ~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|.. ..+.++|...++++.+.++++.......+......++.++|..+.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 653 358888999999888876654332222222223345677777777776553
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.53 E-value=1.1e-12 Score=121.30 Aligned_cols=197 Identities=11% Similarity=0.041 Sum_probs=148.0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
++..+..+...+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34556666677777777777777776654 3356677777777888888888888888877754 3356677777888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816 469 CSHV-GLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 469 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 544 (648)
+... |++++|...++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 8888888888888762 3333 4667777888888888888888888877 3333 4677788888888888888
Q ss_pred HHHHHHHHHHhcCC-CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 545 MGKYAAEKLFLAQP-DSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 545 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77788888888888888888888888887653
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=9.1e-13 Score=124.43 Aligned_cols=195 Identities=9% Similarity=0.004 Sum_probs=136.4
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
..+..+...+...|++++|...|+++. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 445555666666666666666666553 2345566667777777777777777777777653 235666777777777
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037816 471 HVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 471 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
..|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777765 12334 5566777777777777777777777776 2233 4666777777778888888888
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..++++++..|.+...+..++.++...|++++|.++++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888777777777777888888888888888888877664
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.4e-13 Score=127.57 Aligned_cols=162 Identities=6% Similarity=0.053 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTV 134 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 334444444444444444444444444332 123334444444444444444444444444432 12233444444444
Q ss_pred hhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816 505 VGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 582 (648)
+.+.|++++|.+.++++ ... .+...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|.+
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 44444444444444443 111 2344444444444555555555555555555555444445555555555555555555
Q ss_pred HHHHHHh
Q 037816 583 AIKRMKE 589 (648)
Q Consensus 583 ~~~~m~~ 589 (648)
.++++.+
T Consensus 215 ~~~~~~~ 221 (243)
T 2q7f_A 215 MLDKAID 221 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5554444
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.7e-13 Score=127.23 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=166.8
Q ss_pred CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHH
Q 037816 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMI 431 (648)
Q Consensus 355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 431 (648)
......+..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3455677778888899999999999999998854 5578888999999999999999999999875 44678899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH
Q 037816 432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511 (648)
Q Consensus 432 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 511 (648)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999865 447788888999999999999999999999874 345788899999999999999
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816 512 IEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS 574 (648)
Q Consensus 512 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 574 (648)
++|.+.++++ ... .+..++..+..++...|++++|...++++++..|+++.++..+..+....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999988 333 45788999999999999999999999999999999988887776554433
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.52 E-value=5.5e-12 Score=120.67 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=122.6
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037816 395 VNNGLINMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLSL 465 (648)
Q Consensus 395 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 465 (648)
.+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 33444444444 5555555555544432 244455555566666 667777777777666654 55666666
Q ss_pred HHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037816 466 LHACSH----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGAC 537 (648)
Q Consensus 466 l~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 537 (648)
...|.. .+++++|...+++..+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...|
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666 77777777777777663 2 45556666666666 777777777777661113456667777777
Q ss_pred HH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037816 538 SI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 538 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 591 (648)
.. .+++++|+..++++.+.+| +.++..++.+|.. .|++++|.+++++..+.|
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77 7888888888888877765 5677777888877 788888888888877755
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=1.3e-12 Score=134.42 Aligned_cols=344 Identities=11% Similarity=0.013 Sum_probs=230.6
Q ss_pred HHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCh---HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL---CEGRQIHGILWKLALQSDLCIESALMDMYS 303 (648)
Q Consensus 227 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 303 (648)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999997765 333444455555667777 8999999888755 4445566666455
Q ss_pred hcC-----CHHHHHHHHHhccCC-CcccHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816 304 KCG-----SVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEE---EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374 (648)
Q Consensus 304 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 374 (648)
..+ ++++|..+|++..++ ++..+..|...|...+... ++.+.+.+....|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 554 788999999887764 5667888888888776544 45555555555553 33445555666666655
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHHHH
Q 037816 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG---DLEDSIKVFSRMAP---RNSVSWNSMIAAFARH----GNGFKAL 444 (648)
Q Consensus 375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~ 444 (648)
+.+......+.+.-...++..+..|...|...| +.++|...|++..+ ++...+..|...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 554444333333323344458888888999999 89999999987753 2334446677777554 7899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC-----CHHHHHH
Q 037816 445 ELYEEMKLEGVEPTDVTFLSLLHA-C--SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG-----LLIEARS 516 (648)
Q Consensus 445 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~ 516 (648)
..|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 43 44555555555 3 5689999999999999874 4 6777778888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHH
Q 037816 517 FIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMK 588 (648)
Q Consensus 517 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 588 (648)
.|++.- .-++..+..|...|.. ..++++|...++++.+. .++.+...++.+|.. ..+.++|..++++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999997 6678888888877766 34999999999998774 456788999998885 458999999999999
Q ss_pred hCCC
Q 037816 589 EMGV 592 (648)
Q Consensus 589 ~~~~ 592 (648)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 9885
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2.9e-12 Score=120.97 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=134.0
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816 366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK 442 (648)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 442 (648)
..+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++. +.+...+..+...|...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 33333444444444444433332 2334445555555556666666666655543 2345566667777777788888
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 443 ALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 443 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
|...++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...++++
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887777633345 4456777777888888888888888888774 2346777888888888899999999888887
Q ss_pred -CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816 522 -PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565 (648)
Q Consensus 522 -~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 565 (648)
... .+...+..+...+...|+.++|...++++.+..|+++....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 333 35667788888888999999999999999999998765443
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.5e-12 Score=129.72 Aligned_cols=244 Identities=8% Similarity=0.019 Sum_probs=188.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNNGLINMY 403 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (648)
.|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|...++.+.... +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45566667777788888888888877754 3456667777777777775 888888888877765 55677888888888
Q ss_pred HhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHH-
Q 037816 404 SKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-VGLVNKG- 478 (648)
Q Consensus 404 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A- 478 (648)
...|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 88888888888888775 4577888888889999999999999999999865 3367788888888887 5554666
Q ss_pred ----HHHHHHhHHhcCCCCChhHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC---------C
Q 037816 479 ----MEFLKSMTEVHRISPRAEHYACVVDMVGRAG--LLIEARSFIERMPVKP-DVLVWQALLGACSIHG---------D 542 (648)
Q Consensus 479 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~ 542 (648)
+..++++.+. -+-+...|..+..++...| ++++|++.+.++...| +...+..+..+|.+.| .
T Consensus 256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 5788888763 2336778888888888888 6889998888874444 4677888888888764 2
Q ss_pred hHHHHHHHHHH-HhcCCCCCccHHHHHHHHHh
Q 037816 543 SEMGKYAAEKL-FLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 543 ~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 573 (648)
.++|+.+++++ .+.+|.....|..++..+..
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 58999999999 89999988888888776654
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.3e-12 Score=124.84 Aligned_cols=224 Identities=10% Similarity=0.061 Sum_probs=167.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHc
Q 037816 364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN----SVSWNSMIAAFARH 437 (648)
Q Consensus 364 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~ 437 (648)
....+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++... ++ ...|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344445555555555555554433 33444566666677777777777777766543 22 23477888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816 438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517 (648)
Q Consensus 438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (648)
|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 336678999999999999999999999999762 333677777787344445699999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----CccHHHHHHHHHhcCChHHHHHHH
Q 037816 518 IERM-PVKPD-VLVWQALLGACSIHGD---SEMGKYAAEKLFLAQ---PDS-----PAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 518 ~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
|+++ ...|+ ...+..+..++...|+ +++|+..++++++.. |+. ..+|..++.+|...|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988 44454 7778888888888888 888999999998765 442 257888999999999999999999
Q ss_pred HHHHhCC
Q 037816 585 KRMKEMG 591 (648)
Q Consensus 585 ~~m~~~~ 591 (648)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998743
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=2.2e-12 Score=115.28 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=142.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV 502 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 502 (648)
+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888889999999999999999988854 336778888889999999999999999998774 344677788888
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 580 (648)
..+...++++.|.+.+++. ...| +...+..+..++...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 3334 5778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 037816 581 AKAIKRMKEM 590 (648)
Q Consensus 581 ~~~~~~m~~~ 590 (648)
++.+++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.1e-12 Score=118.70 Aligned_cols=186 Identities=15% Similarity=0.027 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--
Q 037816 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-- 406 (648)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 406 (648)
+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. |.+...+..+..++...
T Consensus 11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 88 (217)
T 2pl2_A 11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR 88 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence 3333444444444444444443322 2223333333333333444444444443333332 22333344444444443
Q ss_pred ---------CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 037816 407 ---------GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474 (648)
Q Consensus 407 ---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 474 (648)
|++++|+..|++.. +.+...|..+..++...|++++|+..|++..+.. .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence 45555555544432 2234444445555555555555555555555544 444455555555555555
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (648)
+++|...|+++.+. .+.+...+..+...+...|++++|.+.+++
T Consensus 167 ~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 167 LDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555442 122444455555555555555555555444
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=2.1e-12 Score=128.75 Aligned_cols=227 Identities=12% Similarity=0.106 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-HHHHHHHHhhcC---CCChhHHHHHHHH
Q 037816 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD-LEDSIKVFSRMA---PRNSVSWNSMIAA 433 (648)
Q Consensus 358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~ 433 (648)
...|..+...+...|++++|...++.+++.. +.+..+|..+..++...|+ +++|+..|+++. +.+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3556677778888999999999999999876 6678889999999999997 999999999876 4577899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh-cCCHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLI 512 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 512 (648)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999965 337889999999999999999999999999884 23478899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC--------
Q 037816 513 EA-----RSFIERM-PVKP-DVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG-------- 575 (648)
Q Consensus 513 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 575 (648)
+| ++.+++. .+.| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 4555 4778888888888888 699999999998 889999999999999999875
Q ss_pred -ChHHHHHHHHHH-Hh
Q 037816 576 -RWKERAKAIKRM-KE 589 (648)
Q Consensus 576 -~~~~A~~~~~~m-~~ 589 (648)
.+++|+++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=6e-12 Score=116.27 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=141.2
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 037816 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFAR 436 (648)
Q Consensus 360 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 436 (648)
.+..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++++. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 33444444444455555555554444432 3334455556666666666666666666543 2355667777777888
Q ss_pred c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 437 H-GNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 437 ~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...|.+.|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888877333343 566777788888888888888888888774 233577888888888889999999
Q ss_pred HHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 515 RSFIERM-PVK--PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 515 ~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
.+.++++ ... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9888887 323 3566677777778888999999999999988888887655443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=3.3e-13 Score=137.75 Aligned_cols=261 Identities=11% Similarity=0.053 Sum_probs=173.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHHHHh----C-CCCchhHHHHH
Q 037816 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D-FTSNPFVNNGL 399 (648)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 399 (648)
+...+...|++++|+..|++..+.+. .+. ..+..+...+...|+++.|...+++..+. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 33445555555566555555555421 122 24445555555566666666655554432 1 12233455666
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 037816 400 INMYSKCGDLEDSIKVFSRMAPR---------NSVSWNSMIAAFARHGN-----------------GFKALELYEEMKLE 453 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~ 453 (648)
...|...|++++|...+++...- ...++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777766654321 23466677777778888 88888887776542
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037816 454 ----GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-PV 523 (648)
Q Consensus 454 ----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 523 (648)
+-.+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++. ..
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1112 2346777778888999999999999888763111111 237788888999999999999998876 11
Q ss_pred ---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 524 ---KPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 524 ---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 4667888888999999999999999998764432 348889999999999999999999998763
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.6e-11 Score=117.49 Aligned_cols=223 Identities=9% Similarity=-0.052 Sum_probs=167.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34455555666666777777777666662 234555556666666 777777777777776665 55666677
Q ss_pred HHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 400 INMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 400 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 777777 7888888887776653 356677778888888 889999999999988865 5566777777777
Q ss_pred c----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH--
Q 037816 471 H----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERM-PVKPDVLVWQALLGACSI-- 539 (648)
Q Consensus 471 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-- 539 (648)
. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++. ... +...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCC
Confidence 6 88999999999998874 256777888888888 99999999999887 333 36778888888888
Q ss_pred --cCChHHHHHHHHHHHhcCCCC
Q 037816 540 --HGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 540 --~g~~~~A~~~~~~~~~~~p~~ 560 (648)
.+++++|+..++++.+.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988865
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.5e-12 Score=132.45 Aligned_cols=95 Identities=9% Similarity=-0.001 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C----cccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CH
Q 037816 291 DLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-D----GVSMTVILVGFAQNGFEEEAMQLFVKMVKA----GIEI-DP 358 (648)
Q Consensus 291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 358 (648)
....+..+...+...|++++|...|++..+ + + ...+..+...+...|++++|...+++.... +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455556666666777777766666543 2 1 124555566666666666666666665432 1111 12
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816 359 NMVSAVLGVFGVDTSLGLGKQIHSLII 385 (648)
Q Consensus 359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 385 (648)
.++..+...+...|+++.|...++...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555566666665555544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.5e-12 Score=128.43 Aligned_cols=260 Identities=13% Similarity=0.092 Sum_probs=176.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHhccCChhHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----DFT-SNPFVNNGLI 400 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li 400 (648)
...+...|++++|...|++..+.. +.+ ...+..+...+...|+++.|...++..... +.+ ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344555566666666666655542 112 234455555556666666666665554322 111 1244566667
Q ss_pred HHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 037816 401 NMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGN--------------------GFKALELYEEMK 451 (648)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~ 451 (648)
..|...|++++|...+.+..+ ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766531 11 2366677777888888 888888887765
Q ss_pred Hc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037816 452 LE----GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM- 521 (648)
Q Consensus 452 ~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 521 (648)
+. +..| ....+..+...+...|++++|...+++..+...-.+ ...++..+...|...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 1112 234677778888899999999999998875311111 2347888889999999999999999876
Q ss_pred ---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 522 ---PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 522 ---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
+..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11122 5567788888999999999999999998765432 3478899999999999999999999988
Q ss_pred hC
Q 037816 589 EM 590 (648)
Q Consensus 589 ~~ 590 (648)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 74
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.2e-12 Score=135.66 Aligned_cols=192 Identities=9% Similarity=0.008 Sum_probs=162.7
Q ss_pred CchhHHHHHHHHHHhCCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816 391 SNPFVNNGLINMYSKCGDL-EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll 466 (648)
.+...+..+...|...|++ ++|++.|++.. +.+...|..+..+|...|++++|...|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4556666666777777777 77777776654 335678888888999999999999999999885 47788888888
Q ss_pred HHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc--------CCHHHHHHHHHhC-CCCC---
Q 037816 467 HACSHV---------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA--------GLLIEARSFIERM-PVKP--- 525 (648)
Q Consensus 467 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 525 (648)
..+... |++++|...++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999998 9999999999999874 334788899999999988 9999999999988 5455
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 526 -DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 526 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
+...|..+..+|...|++++|+..++++++.+|.++.++..++.++...|++++|++.+++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999999999999999999999999999999999999976544
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.5e-12 Score=123.08 Aligned_cols=218 Identities=10% Similarity=-0.019 Sum_probs=179.8
Q ss_pred hccCChhHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816 369 GVDTSLGLGKQIHSLIIKSDF---TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK 442 (648)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 442 (648)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 455789999999999987642 2346788899999999999999999999875 4468899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037816 443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM- 521 (648)
Q Consensus 443 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 521 (648)
|...+++..+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999864 336788899999999999999999999999874 455445555556667789999999999776
Q ss_pred -CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 522 -PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD----SPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 522 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
...++...+ .++..+...++.++|+..++++++..|. ++.++..++.+|...|++++|...+++..+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 223333333 4667778888999999999999877663 36889999999999999999999999998754
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=8.6e-10 Score=117.36 Aligned_cols=217 Identities=9% Similarity=0.036 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 037816 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK-QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418 (648)
Q Consensus 340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (648)
+.+..+|++.... .+-+...|.....-+...|+.+.|. .+++..... +|.+...+-..+...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455678777765 3556777777777777888888896 999998864 466777788888888999999999999987
Q ss_pred cCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-
Q 037816 419 MAP-------------RN------------SVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH- 471 (648)
Q Consensus 419 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~- 471 (648)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 753 21 235777788888889999999999999876 2 1223334333222223
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP----DVLVWQALLGACSIHGDSEMG 546 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A 546 (648)
.++.+.|..+|+...+. ++.+...+...++.....|+.+.|..+|++. ...| ....|...+..-.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35689999999999985 4456777788899888999999999999997 3333 246688888888889999999
Q ss_pred HHHHHHHHhcCCCCC
Q 037816 547 KYAAEKLFLAQPDSP 561 (648)
Q Consensus 547 ~~~~~~~~~~~p~~~ 561 (648)
..+.+++.+..|+++
T Consensus 561 ~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHhCCCCc
Confidence 999999999999875
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.6e-12 Score=132.24 Aligned_cols=297 Identities=12% Similarity=0.009 Sum_probs=202.2
Q ss_pred CCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----
Q 037816 254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSKCGSVEDAWQIFEFAEE-----L---- 321 (648)
Q Consensus 254 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~---- 321 (648)
.+....+......+...|++++|...++.+.+.+.... ..++..+...|...|++++|...+++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455666777788999999999999999998742211 35788899999999999999999987643 1
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHhccCC--------------------hhH
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-ID----PNMVSAVLGVFGVDTS--------------------LGL 376 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~~ 376 (648)
....+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2446777888999999999999999988753110 11 2244444555555555 444
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816 377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLEG 454 (648)
Q Consensus 377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 454 (648)
|...+..... ++.....+ ...++..+...|...|++++|...+++..+..
T Consensus 166 A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4444333221 11111111 12356667777777788888888777766421
Q ss_pred C-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC----
Q 037816 455 V-EPT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM---- 521 (648)
Q Consensus 455 ~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 521 (648)
. .++ ..++..+...+...|++++|...+++..+...-.+ ...++..+...|...|++++|.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 122 23667777788888888888888888765311111 1557778888888999999998888876
Q ss_pred CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCccHHHHHHHHHhcCChH
Q 037816 522 PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP------DSPAPYILMANIYSCSGRWK 578 (648)
Q Consensus 522 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 578 (648)
+..++ ..++..+...|...|++++|...++++++..+ ....++..++.++...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 11122 55677888889999999999999999886532 23457778888888888764
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=6.3e-12 Score=128.19 Aligned_cols=270 Identities=14% Similarity=0.018 Sum_probs=161.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcC
Q 037816 262 SSVMACSGLQALCEGRQIHGILWKLALQSDL----CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG 337 (648)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 337 (648)
.+...+...|++++|...++.+.+.+.. +. .++..+...|...|++++|...+++..+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------- 115 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL---------------- 115 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 3444555566666666666666554311 11 24455555555555555555555443220
Q ss_pred CHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhCCC---
Q 037816 338 FEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D-FTSNPFVNNGLINMYSKCGD--- 408 (648)
Q Consensus 338 ~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~--- 408 (648)
....+. +.....+..+...+...|+++.|...++.+.+. + .+....++..+...|...|+
T Consensus 116 -----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (411)
T 4a1s_A 116 -----------AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184 (411)
T ss_dssp -----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence 000000 111233333444444444444444444443322 1 11123345555666666666
Q ss_pred --------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HH
Q 037816 409 --------------LEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT----DV 460 (648)
Q Consensus 409 --------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~ 460 (648)
+++|...+.+..+ + ...++..+...|...|++++|...+++..+... .++ ..
T Consensus 185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6666666554421 1 234677777888888888888888888765310 012 23
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD----VL 528 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~ 528 (648)
.+..+...+...|++++|...+++..+...-.. ...++..+...|...|++++|.+.+++. .. .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 677788888999999999999988876311111 2567788889999999999999999877 11 112 44
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
++..+..+|...|++++|...++++++..+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6778888999999999999999999877653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.5e-11 Score=108.31 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=141.6
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH 467 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 467 (648)
.++.+|..+...|...|++++|+..|++.. +.+..+|..+..+|.+.|++++|...+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356678888888999999999999998765 3467788889999999999999999999988764 345667777788
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816 468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 545 (648)
.+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999999874 3447888899999999999999999999988 4444 57889999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 037816 546 GKYAAEKLFLAQPDS 560 (648)
Q Consensus 546 A~~~~~~~~~~~p~~ 560 (648)
|+..++++++.+|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999999875
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.1e-11 Score=125.24 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAP-----R-----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT---- 458 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~---- 458 (648)
.++..+...|...|++++|...+.+..+ + ...+++.+...|...|++++|+..+++..+... .++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3445555555556665555555544321 1 123556666666777777777777766654210 011
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC-CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-----CCC-H
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RI-SPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-----KPD-V 527 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~ 527 (648)
..++..+..+|...|++++|...+++..+.. +. +....++..+...|.+.|++++|.+.+++. .+ .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1356666677777777777777777765510 12 224556667777777777777777777665 11 111 2
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 528 LVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+..+...+...|+ .++|+.++++. ...|....++..++.+|...|++++|.+++++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 224455566666677 66666666655 22233445677778888888888888888877755
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=3.9e-10 Score=109.76 Aligned_cols=219 Identities=10% Similarity=0.073 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFG-------VDTSL-------GLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405 (648)
Q Consensus 340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (648)
++|...|++..... +.+...|..+...+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777776643 345555655555543 34665 7777777777763224455677777777778
Q ss_pred CCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 037816 406 CGDLEDSIKVFSRMAP--R-NSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGME 480 (648)
Q Consensus 406 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~ 480 (648)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877653 2 333 67777777778888888888888887754 23344443333222 23578888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-P---VKP--DVLVWQALLGACSIHGDSEMGKYAAEKLF 554 (648)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 554 (648)
+|++..+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888764 2336777777888888888888888888777 2 244 35667777777777888888888888888
Q ss_pred hcCCCCCc
Q 037816 555 LAQPDSPA 562 (648)
Q Consensus 555 ~~~p~~~~ 562 (648)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88877543
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.2e-12 Score=125.86 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=120.3
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh------CC-
Q 037816 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKA-------GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DF- 389 (648)
Q Consensus 324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 389 (648)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666777788888888888888887663 22233445556666666666777666666665543 11
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTF 462 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~ 462 (648)
+....++..+...|...|++++|...| ++..+. +-.| ....+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHHH
Confidence 122334444445555555555555444 444332 1111 12334
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVH-----RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-P---------VKPD 526 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~ 526 (648)
..+...+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++ . ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 444555555555555555555554320 0011 2334555555555555555555555544 0 0111
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 527 -------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 527 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
...+..+...+...+.+.++...++.+....|....++..++.+|...|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111222223334455666666677777777777777888888888888888888888887765
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.33 E-value=4.1e-11 Score=106.74 Aligned_cols=161 Identities=16% Similarity=0.049 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (648)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3334444445555555555555544322 224445555555555556666666666655542 2234555555666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816 507 RAGLLIEARSFIERM-P-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 507 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 22345667777777778888888888888888888877778888888888888888888888
Q ss_pred HHHHhC
Q 037816 585 KRMKEM 590 (648)
Q Consensus 585 ~~m~~~ 590 (648)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=2.2e-11 Score=120.00 Aligned_cols=267 Identities=14% Similarity=0.037 Sum_probs=160.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------CcccHHHH
Q 037816 262 SSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSKCGSVEDAWQIFEFAEEL---------DGVSMTVI 329 (648)
Q Consensus 262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l 329 (648)
.....+...|++++|...++.+.+...... ...+..+...|...|++++|.+.+++.... ....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344455666777777777777666532111 244555666666666666666665544320 12234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD 408 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 408 (648)
...+...|++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHcCc
Confidence 4455555555555555554433210 00100 012244445555555555
Q ss_pred --------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC
Q 037816 409 --------------------LEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT 458 (648)
Q Consensus 409 --------------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~ 458 (648)
+++|...+++... + ....+..+...+...|++++|...+++..+... .++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 5555555544321 1 134566777788888888888888887764210 111
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC
Q 037816 459 ----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD 526 (648)
Q Consensus 459 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~ 526 (648)
..++..+...+...|++++|...+++..+...-.+ ...++..+...|...|++++|...+++. .. .++
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 23677777888889999999999888765311111 2567778888999999999999988876 11 112
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 527 ----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 527 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
..++..+...|...|++++|...++++++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 446778888899999999999999999887654
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=2.7e-09 Score=113.55 Aligned_cols=435 Identities=10% Similarity=0.023 Sum_probs=231.5
Q ss_pred CCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCC---hhHHHHhhccCC-
Q 037816 41 LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ---MRNAVKLFDDMP- 116 (648)
Q Consensus 41 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~- 116 (648)
|.|...+..++..+.+.+++..++.+|+.+... + |.+...|...+..-.+.|+ ++.+..+|+...
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---f--------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---F--------PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C--------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---C--------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 445566666777766667777777777777766 3 5556667777776666666 777777776654
Q ss_pred -C---CCcccHHHHHHHHHhcCCc--------hHHHHHHHHHHH-cCC-CCCcHhHHHHHHHHhhc---------cCChH
Q 037816 117 -M---RDTVSWNTMVSGFLRNGEF--------DMGFGFFKRSLE-LGF-YQLDQASFTIILSACDR---------SELSL 173 (648)
Q Consensus 117 -~---~~~~~y~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~~~~~~~~ll~~~~~---------~~~~~ 173 (648)
- |++..|...+.-..+.++. +.+.++|++... .|. .|+....|...+..... .++.+
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 2 5555555555544444332 223356665443 254 45544355555444322 22345
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHh--C
Q 037816 174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--G 251 (648)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~ 251 (648)
.+..+++..+......-..+|......--..+. ..+.+++.+ ...+++.|...+.++.. .
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~ 273 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITK 273 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHH
Confidence 556666665532111111222221111100000 001111100 00112222222222110 0
Q ss_pred CCC---------------C-----C---hhhHHHHHHHhhccC-------ChHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 037816 252 LIN---------------P-----N---SLTYLSSVMACSGLQ-------ALCEGRQIHGILWKLALQSDLCIESALMDM 301 (648)
Q Consensus 252 ~~~---------------p-----~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (648)
++. | + ...|...+..-...+ ..+.+..+|++.+.. .+.+..+|...+..
T Consensus 274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY 352 (679)
T ss_dssp TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 000 1 1 112222222222111 122344556666554 24456666666666
Q ss_pred HHhcCCHHHHH-HHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CcC-----------
Q 037816 302 YSKCGSVEDAW-QIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI---------EID----------- 357 (648)
Q Consensus 302 ~~~~~~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~----------- 357 (648)
+...|+.++|. ++|++... | +...|-..+...-..|+++.|.++|+++..... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 66677766665 77766554 2 223344555566667777777777777665310 121
Q ss_pred -HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CCHHHHHHHHhhcC---CCChhHHHHHHH
Q 037816 358 -PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKVFSRMA---PRNSVSWNSMIA 432 (648)
Q Consensus 358 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~l~~ 432 (648)
...|...+....+.|..+.|..+|..+.+.-...+..+|...+..-.+. ++.+.|..+|+... +.+...|...+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 2356666777777788888888888887651112233343333333344 44888888888765 345666777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEP--TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
.....|+.+.|..+|++.......+ ....|...+.--...|+.+.+..+.+++.+. .|+......+++-|.-.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYKVL 587 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHTCBT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHhcCC
Confidence 7777888888888888888754222 2345666666667788888888888888875 35555555566665443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1e-10 Score=118.00 Aligned_cols=229 Identities=7% Similarity=-0.036 Sum_probs=166.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC--C----CCchhHHH
Q 037816 329 ILVGFAQNGFEEEAMQLFVKMVKA----GIEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD--F----TSNPFVNN 397 (648)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 397 (648)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344566677777777777777653 1111 23456666677777777777777777666431 1 11234677
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 037816 398 GLINMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TDVTFL 463 (648)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~ 463 (648)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888889999999888877642 11 247788889999999999999999998762 3323 456788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037816 464 SLLHACSHVGLVNKGMEFLKSMTEVH---RISPRAEHYACVVDMVGRAGL---LIEARSFIERMPVKPD-VLVWQALLGA 536 (648)
Q Consensus 464 ~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 536 (648)
.+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88999999999999999999987631 112223346778889999999 9999999999855544 4457778889
Q ss_pred HHHcCChHHHHHHHHHHHhcC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~ 557 (648)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998653
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=2.6e-11 Score=130.67 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=141.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYAC 500 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 500 (648)
+..+|+.|...|.+.|++++|++.|++..+.. | +...+..+..++.+.|++++|+..|+++.+. .| +...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 35678888888888999999999999888853 5 5678888889999999999999999998874 44 6788999
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChH
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 578 (648)
+..+|.+.|++++|++.|++. .+.|+ ...|..+..+|.+.|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999887 55564 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 037816 579 ERAKAIKRMKE 589 (648)
Q Consensus 579 ~A~~~~~~m~~ 589 (648)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=2e-09 Score=107.94 Aligned_cols=257 Identities=11% Similarity=-0.016 Sum_probs=136.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCc----hhHHHHHHHHH
Q 037816 333 FAQNGFEEEAMQLFVKMVKAGIEIDPN----MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSN----PFVNNGLINMY 403 (648)
Q Consensus 333 ~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~ 403 (648)
+...|++++|...+++........+.. .+..+...+...|+++.|...+++.....- ..+ ..++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 334455555555555444432111111 223333344445555555555544432110 001 12234455556
Q ss_pred HhCCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHH
Q 037816 404 SKCGDLEDSIKVFSRMAP----------R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--P--TDVTFLSLLHA 468 (648)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~ 468 (648)
...|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 666666666666654421 1 1224445566666777777777777766653211 1 12455566666
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGAC 537 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~ 537 (648)
+...|++++|...+++......-......+. ..+..+...|++++|...+++. ...|. ...+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 7777777777777777655311111111111 2233466777777777777776 22221 22455666677
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
...|++++|...++++.+..+.. ..++..++.++...|++++|...+++..+
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77778887777777776543221 13556667777777888888777777654
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=4.9e-10 Score=109.07 Aligned_cols=212 Identities=12% Similarity=0.025 Sum_probs=171.5
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hCCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 037816 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYS-------KCGDL-------EDSIKVFSRMAP---R-NSVSWNSMIAAFAR 436 (648)
Q Consensus 375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 436 (648)
++|..+|+.+.... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 667778888877775 35886 899999987653 3 56689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh-hcCCHHH
Q 037816 437 HGNGFKALELYEEMKLEGVEPT-DV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG-RAGLLIE 513 (648)
Q Consensus 437 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 513 (648)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 464 33 7888999999999999999999999873 2345555554444422 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 514 ARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA---QPD-SPAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 514 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
|.++|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ...+|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 3333 5788999999999999999999999999986 343 5568889999999999999999999999
Q ss_pred HhCC
Q 037816 588 KEMG 591 (648)
Q Consensus 588 ~~~~ 591 (648)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8754
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.7e-11 Score=119.54 Aligned_cols=239 Identities=11% Similarity=0.037 Sum_probs=150.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------C---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 037816 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEE--------L---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA------ 352 (648)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------ 352 (648)
.+..++..+...+...|++++|..+|+++.+ . ....+..+...|...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3466788999999999999999999988765 1 2345777888999999999999999998764
Q ss_pred CC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816 353 GI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS 424 (648)
Q Consensus 353 ~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 424 (648)
+- +....++..+...+...|++++|...++.+.+. +.. .....+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------------------------- 156 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL---------------------------- 156 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----------------------------
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH----------------------------
Confidence 22 234567888889999999999999999887753 111 122233
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CC
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------RI 491 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~ 491 (648)
..+...+...|++++|+..++++.+. +..| ...++..+...+...|++++|...++++.+.. ..
T Consensus 157 ---~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 157 ---NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444455555555555555554432 1122 23355566666677777777777777665420 11
Q ss_pred CC-C------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 492 SP-R------AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 492 ~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
.+ . ...+..+...+...+.+.+|...++.. ...| +..++..+..+|...|++++|...++++++..|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1 112222333344445555566666665 2233 3567888899999999999999999999887664
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=3.3e-10 Score=104.93 Aligned_cols=205 Identities=9% Similarity=0.025 Sum_probs=140.8
Q ss_pred cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHH
Q 037816 356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIA 432 (648)
Q Consensus 356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 432 (648)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45667777777888888888888888888877644666666668888888888888888887764 234567777888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPTD-------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR---AEHYACVV 502 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~ 502 (648)
+|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 8888888888888888887753 2234 3466666777778888888888888865 3443 56666777
Q ss_pred HHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 503 DMVGRAGLLIEARSFIERM-P-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
..|...|+. .++++ . ...+...+.... ....+.+++|+..++++++..|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777655543 22222 1 112333343332 33446678999999999999999887777666543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.3e-10 Score=116.86 Aligned_cols=194 Identities=13% Similarity=0.012 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CH
Q 037816 395 VNNGLINMYSKCGDLEDSIKVFSRMAP-----R-----NSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TD 459 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~ 459 (648)
++..+...|...|+++.|...+.+..+ + ...+++.+...|...|++++|+..+++..+. +-.+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444555555566666555555544321 1 1235556666667777777777777665542 1111 12
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISPRAEHYACVVDMVGRAGLLIEARSFIERM----PV--KPD-VLV 529 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~ 529 (648)
.++..+..++...|++++|...+++..+.. +.+....++..+...|.+.|++++|.+.+++. .. .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666667777777777777777765510 12223556667777777777777777777765 11 122 233
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 530 WQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 530 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+..+...+...++ +.+|+..+++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444555666 66666666652 22233345666778888888888888888777654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.5e-10 Score=99.85 Aligned_cols=167 Identities=11% Similarity=-0.023 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566678888899999999999998874 367788889999999999999999999998864 446788888999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHH
Q 037816 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKY 548 (648)
Q Consensus 471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~ 548 (648)
..|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ .. ..+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 3457888999999999999999999999987 33 3357889999999999999999999
Q ss_pred HHHHHHhcCCCCCcc
Q 037816 549 AAEKLFLAQPDSPAP 563 (648)
Q Consensus 549 ~~~~~~~~~p~~~~~ 563 (648)
.++++++..|++...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999988877543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=2.3e-10 Score=106.00 Aligned_cols=189 Identities=10% Similarity=-0.008 Sum_probs=115.6
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---P-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSL 465 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l 465 (648)
.++..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+.. | +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 345566666667777777777777776553 2 455555556667777777777777777776643 4 34456666
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRA-------EHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALL 534 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~ 534 (648)
..++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++. ...|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 66677777777777777777653 12233 34566666666677777777777665 44554 34455555
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+|... +...++++....+.++..|... .....|.+++|+..+++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 555432 3344555555555543333322 233445669999999999874
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=6.5e-09 Score=104.40 Aligned_cols=227 Identities=10% Similarity=0.015 Sum_probs=166.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHhccCChhHHHHHHHHHHHhC--C---C-CchhHHH
Q 037816 329 ILVGFAQNGFEEEAMQLFVKMVKAGI-EID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD--F---T-SNPFVNN 397 (648)
Q Consensus 329 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~ 397 (648)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 122 3456667777778888888888877766421 1 1 1245677
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 037816 398 GLINMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKL-----EGVEPTDVTFL 463 (648)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~ 463 (648)
.+...|...|++++|...|.+..+ ++ ..++..+..+|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 788888899999998888876642 12 34677888899999999999999999876 33 22366788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037816 464 SLLHACSHVGLVNKGMEFLKSMTEVHRI---SPRAEHYACVVDMVGRAGL---LIEARSFIERMPVKPD-VLVWQALLGA 536 (648)
Q Consensus 464 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 536 (648)
.+...+...|++++|...+++..+...- +.....+..+...|...|+ +.+|+..+++.+..|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999999875222 1223456677778888888 9999999998754444 3456678888
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 037816 537 CSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~ 556 (648)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 82
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=6.4e-10 Score=115.11 Aligned_cols=209 Identities=11% Similarity=0.017 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHh
Q 037816 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL-GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS 417 (648)
Q Consensus 339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (648)
+++++..+++..... +.+...+..+..++...|++ ++|...++.+.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666554432 34667777777778888888 88888888877765 4557778888888888888888888888
Q ss_pred hcC--CCChhHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CcHHHH
Q 037816 418 RMA--PRNSVSWNSMIAAFARH---------GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV--------GLVNKG 478 (648)
Q Consensus 418 ~~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~A 478 (648)
+.. .|+...+..+...|... |++++|+..+++..+.. +.+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 765 35567777778888888 88899999999888854 33577788888888887 889999
Q ss_pred HHHHHHhHHhcCCC---CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 479 MEFLKSMTEVHRIS---PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEK 552 (648)
Q Consensus 479 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 552 (648)
...|+++.+. -+ .+...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|+..+.+
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988874 22 37788888889999999999999998887 4444 466678888888888888888765543
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=9.8e-10 Score=105.15 Aligned_cols=222 Identities=11% Similarity=0.103 Sum_probs=152.4
Q ss_pred hccCChhHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----------CChhHHHHH
Q 037816 369 GVDTSLGLGKQIHSLIIKS-------DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-----------RNSVSWNSM 430 (648)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 430 (648)
...|+++.|..++++..+. ..+....++..+...|...|++++|...+++..+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888877776642 2234566788889999999999999998887641 134578888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhH
Q 037816 431 IAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-----RISP-RAEH 497 (648)
Q Consensus 431 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~ 497 (648)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++.+.. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1113 34567788888999999999999999887631 1122 4667
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCC
Q 037816 498 YACVVDMVGRAGLLIEARSFIERM-P---------VKPD-VLVWQALLGACSIHGD------SEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 498 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~ 560 (648)
+..+...|...|++++|.+.++++ . ..+. ...|..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888889999999999999988876 1 1222 2233333333333222 333333333333334555
Q ss_pred CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 561 PAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 561 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..++..++.+|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999998763
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.09 E-value=5.7e-08 Score=97.29 Aligned_cols=258 Identities=11% Similarity=-0.059 Sum_probs=124.5
Q ss_pred HHHHHCCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHhhccCChHHHHHHHHHHHHhcCC-Cc----hhHHHHHHH
Q 037816 230 SGLVQNQLYEEGLKLFVKMHLGLINPNSL----TYLSSVMACSGLQALCEGRQIHGILWKLALQ-SD----LCIESALMD 300 (648)
Q Consensus 230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 300 (648)
..+...|++++|...+++........+.. .+..+...+...|+++.|...++...+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34455666666666666655432111111 2333344455556666666666555442110 11 122344555
Q ss_pred HHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cCHHHHHHHH
Q 037816 301 MYSKCGSVEDAWQIFEFAEE-------L----DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE----IDPNMVSAVL 365 (648)
Q Consensus 301 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ll 365 (648)
.+...|++++|.+.+++... + ....+..+...+...|++++|...+++....... ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666666655432 0 0112334555566666666666666666543211 1123445555
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCc-hhHHH-----HHHHHHHhCCCHHHHHHHHhhcCCCC-------hhHHHHHHH
Q 037816 366 GVFGVDTSLGLGKQIHSLIIKSDFTSN-PFVNN-----GLINMYSKCGDLEDSIKVFSRMAPRN-------SVSWNSMIA 432 (648)
Q Consensus 366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~ 432 (648)
..+...|++++|...++......-.++ ...+. ..+..+...|++++|...+++...+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 556666666666666666554311111 01111 12233556666666666666654321 112344455
Q ss_pred HHHHcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 433 AFARHGNGFKALELYEEMKLE----GVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666666666666555431 111111 1333334445555555555555555443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=8.1e-09 Score=97.69 Aligned_cols=205 Identities=12% Similarity=0.071 Sum_probs=128.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-N---SVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT-DVTFL 463 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 463 (648)
+...+-.+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566666677777777777766642 2 2 34556666666777777777777777666421 111 33455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037816 464 SLLHACSH--------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535 (648)
Q Consensus 464 ~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 535 (648)
.+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555655 66777777777776653 111222222221111100000 112456778
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037816 536 ACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCS----------GRWKERAKAIKRMKEMGVDKETGISWIE 602 (648)
Q Consensus 536 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 602 (648)
.|...|++++|+..++++++..|+++ .++..++.+|... |++++|+..++++.+.. |
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p-------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P-------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence 89999999999999999999999854 4788999999877 99999999999998743 2
Q ss_pred EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636 (648)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 636 (648)
.+|...+....+.++..++.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 234556666666666666554
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=1.4e-09 Score=117.20 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=138.9
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037816 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSL 465 (648)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l 465 (648)
|.+...++.|...|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..|++..+.. | +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3456778888888899999999999888765 3467788889999999999999999999998854 5 57788999
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS 543 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 543 (648)
..++...|++++|++.|+++.+. -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999999874 2336788999999999999999999999988 55664 77888999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 037816 544 EMGKYAAEKLFLAQP 558 (648)
Q Consensus 544 ~~A~~~~~~~~~~~p 558 (648)
++|.+.++++++..|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999999876543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.9e-08 Score=94.94 Aligned_cols=138 Identities=10% Similarity=0.023 Sum_probs=59.9
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHH
Q 037816 300 DMYSKCGSVEDAWQIFEFAEELDGVS-MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK 378 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 378 (648)
+-..-.|++..++.-...+...+... -.-+.++|...|++... ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 34455677776666544443322221 12233556666655431 01123322333222222 111 33
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816 379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-----RNSVSWNSMIAAFARHGNGFKALELYEEMKL 452 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 452 (648)
..+++....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444444333 23333333444555555555555555554421 1233444445555555555555555555544
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=4.3e-09 Score=87.71 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=77.4
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIH 540 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~ 540 (648)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444445555555555555555442 1223444555555555555555555555554 11 22355566666777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|++++|...++++.+..|.++.++..++.++...|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777778888887777777653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=3.8e-09 Score=101.76 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=118.5
Q ss_pred CHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhccCChhHHHHHH
Q 037816 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA----GIEID-PNMVSAVLGVFGVDTSLGLGKQIH 381 (648)
Q Consensus 307 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 381 (648)
++++|...|+.. ...|...|++++|...|++..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776553 56677778888888777776542 21111 234455555555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC-
Q 037816 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKALELYEEMKLEGVE-PT- 458 (648)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~-p~- 458 (648)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444321 1111221111 23455566666664 7777777777776652100 01
Q ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-Ch-----hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH
Q 037816 459 ---DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RA-----EHYACVVDMVGRAGLLIEARSFIERM-PVKPDVL 528 (648)
Q Consensus 459 ---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 528 (648)
..++..+...+...|++++|+..|+++.+. .... .. ..+..+..++...|++++|...|++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 235666677777777777777777777663 2111 11 14566666777777777777777776 4444321
Q ss_pred ------HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCC
Q 037816 529 ------VWQALLGACS--IHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 529 ------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
.+..++.++. ..+++++|+..|+++..++|..
T Consensus 234 ~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 234 DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 3456777777776666666644
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=4.6e-09 Score=99.42 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=146.0
Q ss_pred CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----Chh
Q 037816 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN---PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R----NSV 425 (648)
Q Consensus 355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~ 425 (648)
+.+...+......+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456777788888999999999999999998865 333 67788899999999999999999998752 2 234
Q ss_pred HHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816 426 SWNSMIAAFAR--------HGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE 496 (648)
Q Consensus 426 ~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 496 (648)
.+..+..++.. .|++++|+..|++..+.. |+. .....+ ..+...... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67777888888 999999999999999854 542 222111 111111110 112
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCC
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIH----------GDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 2556778888899999999988887 33333 45677777778766 889999999999999999986
Q ss_pred c---cHHHHHHHHHhcCChHH
Q 037816 562 A---PYILMANIYSCSGRWKE 579 (648)
Q Consensus 562 ~---~~~~l~~~~~~~g~~~~ 579 (648)
. +...+..++...|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34445555544444443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=2.6e-09 Score=102.92 Aligned_cols=201 Identities=11% Similarity=0.034 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHH
Q 037816 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKA 443 (648)
Q Consensus 373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A 443 (648)
++++|...+... ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3457778888888888876542 1 145788889999999999999
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHH
Q 037816 444 LELYEEMKLEGV---EPT--DVTFLSLLHACSHV-GLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIE 513 (648)
Q Consensus 444 ~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 513 (648)
+..+++..+... .+. ..++..+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998875311 111 34778888889986 9999999999999874111111 4578889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-----HHHHHHHHH--hcCCh
Q 037816 514 ARSFIERM-PVKPD---V-----LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-----YILMANIYS--CSGRW 577 (648)
Q Consensus 514 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 577 (648)
|+..|++. ...|+ . ..|..+..++...|++++|+..++++++..|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 33332 1 256778888999999999999999999999876543 345566664 45778
Q ss_pred HHHHHHHHHHH
Q 037816 578 KERAKAIKRMK 588 (648)
Q Consensus 578 ~~A~~~~~~m~ 588 (648)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888876653
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.00 E-value=1.6e-08 Score=93.20 Aligned_cols=180 Identities=11% Similarity=-0.003 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAP--RN----SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD----VTFL 463 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~ 463 (648)
..+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3444455666777777777777776642 21 2355566667777777777777777777643 321 1333
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037816 464 SLLHACSH------------------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP 525 (648)
Q Consensus 464 ~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 525 (648)
.+..++.. .|++++|...|+++.+. .+-+............ .. ...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~------~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LK------DRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HH------HHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HH------HHH----
Confidence 33333332 34555555555555542 1112222211111000 00 000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
......+...|.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...+.
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678899999999999999999999876 5789999999999999999999999988654
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=8.8e-09 Score=98.41 Aligned_cols=198 Identities=11% Similarity=0.047 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--
Q 037816 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-------R-- 422 (648)
Q Consensus 359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 422 (648)
.++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|...|.+... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444455555555555555555544432 11 22234555666666666666666666655431 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 037816 423 --NSVSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---- 489 (648)
Q Consensus 423 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---- 489 (648)
...++..+...|...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2346677777888888888888888887764 1123 34567778888899999999999998887631
Q ss_pred --CCCC-ChhHHHHHHHHhhhcC------CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 490 --RISP-RAEHYACVVDMVGRAG------LLIEARSFIERMP-VKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 490 --~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
...+ ....+..+...+...+ .+.++...++... ..| ...++..+...|...|++++|...++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 3334444444333322 3455555555552 223 2556888889999999999999999998764
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.99 E-value=2.4e-08 Score=94.22 Aligned_cols=240 Identities=11% Similarity=-0.010 Sum_probs=160.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL 409 (648)
Q Consensus 330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (648)
++-..-.|++..++.-..++ ...........+.+++...|+++.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 34456678888887743332 1122233344455677666666531 112233334443333 33333
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816 410 EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSM 485 (648)
Q Consensus 410 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 485 (648)
|+..|++.. .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777655 2455556677888888999999999999887765322 4566777888899999999999999999
Q ss_pred HHhcCCCC-----ChhHHHHHHHH--hhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 486 TEVHRISP-----RAEHYACVVDM--VGRAG--LLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 486 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.+. .| +..+...|+.+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|...++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 764 55 35555556655 33334 899999999998 4456644444555588888999999999988776
Q ss_pred c----------CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 556 A----------QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 556 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
. +|.++.++..++.+....|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5 48888888888888888887 8889999888754
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.8e-08 Score=83.90 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (648)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888899999999999888764 346777888888888899999999999998874 344677788888999
Q ss_pred hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 506 GRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
...|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 323 35777888888999999999999999999988875
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.96 E-value=4.9e-10 Score=95.85 Aligned_cols=139 Identities=9% Similarity=0.025 Sum_probs=95.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI 512 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 512 (648)
+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 34456666776666665542 232 234455666777777777777777777663 2236677777777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKY-AAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
+|+..|++. .+.| +...|..+...|.+.|++++|.. +++++++++|.++.+|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777776 4455 46677788888888888766554 4588888888888888888888877774
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.4e-08 Score=97.41 Aligned_cols=177 Identities=11% Similarity=-0.021 Sum_probs=141.5
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 409 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
.+.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444555555555566677778888899999999999999998864 336678888889999999999999999998663
Q ss_pred cCCCCChhHHHH-HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--Ccc
Q 037816 489 HRISPRAEHYAC-VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAP 563 (648)
Q Consensus 489 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 563 (648)
.|+...... ....+...|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 454443332 233466778888888888877 4445 57888999999999999999999999999999988 789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 564 YILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 564 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887653
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.93 E-value=2.4e-09 Score=91.50 Aligned_cols=122 Identities=12% Similarity=0.032 Sum_probs=104.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG 541 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 541 (648)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556778899999999998864 344 5667778999999999999999999998 5555 5888999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 037816 542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA-IKRMKE 589 (648)
Q Consensus 542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 589 (648)
++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 588766
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=7.7e-09 Score=112.05 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=91.0
Q ss_pred HhCCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816 404 SKCGDLEDSIKVFSRMA-----------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472 (648)
Q Consensus 404 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 472 (648)
...|++++|++.+++.. +.+...+..+..++...|++++|+..|++..+.+ +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44555555555555443 2234455555555566666666666666655532 22444555555555666
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 037816 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAA 550 (648)
Q Consensus 473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 550 (648)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|++.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666665542 12245555556666666666666 5555555 2233 3445555555666666666666666
Q ss_pred HHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 551 EKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 551 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
+++++.+|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666655566666655554443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=8.5e-08 Score=87.24 Aligned_cols=172 Identities=8% Similarity=-0.059 Sum_probs=138.6
Q ss_pred HHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 037816 412 SIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG----LVNKGMEFLKSMT 486 (648)
Q Consensus 412 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~ 486 (648)
|.+.|++.. ..++..+..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3466777778888888899999999999988865 56677777777777 6 8999999999997
Q ss_pred HhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 037816 487 EVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERM-PVKPD---VLVWQALLGACSI----HGDSEMGKYAAEKLF 554 (648)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 554 (648)
+. -++..+..|...|.. .+++++|.+.|++. ...|. +..+..|...|.. .+++++|+..++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 63 367778888888887 88999999999988 44453 7888889999988 889999999999999
Q ss_pred hcCCCCCccHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 037816 555 LAQPDSPAPYILMANIYSCS-G-----RWKERAKAIKRMKEMGV 592 (648)
Q Consensus 555 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 592 (648)
+. |.++.++..++.+|... | ++++|.+++++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88 66778999999999864 3 89999999999988774
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=2.2e-08 Score=106.51 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816 406 CGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482 (648)
Q Consensus 406 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 482 (648)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 357789999999999999999999999999854 336788889999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 037816 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 557 (648)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999884 3346889999999999999999999999988 4444 577888899999999 99999999999999999
Q ss_pred CCCCccHHHHH
Q 037816 558 PDSPAPYILMA 568 (648)
Q Consensus 558 p~~~~~~~~l~ 568 (648)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=4.4e-08 Score=88.88 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=99.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816 429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508 (648)
Q Consensus 429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 508 (648)
.+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 38888999999999999999999864 336788888999999999999999999999874 233778888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 509 GL--LIEARSFIERMPVKPDV--LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 509 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
|. .+.+...++.. ..|++ ..+.....++...|++++|+..|+++++..|++
T Consensus 136 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 45566677766 24443 344455666778899999999999999999974
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.7e-08 Score=88.94 Aligned_cols=156 Identities=11% Similarity=0.046 Sum_probs=96.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-hhhc
Q 037816 430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM-VGRA 508 (648)
Q Consensus 430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 508 (648)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3444555555555555555554432 123445555555555666666666666655432 2222222221111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CccHHHHHHHHHhcCChHHHHHHH
Q 037816 509 GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAI 584 (648)
Q Consensus 509 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 584 (648)
+...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|.. +.++..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223355666655 3345 47778888888999999999999999999998865 558889999999999999999998
Q ss_pred HHHHh
Q 037816 585 KRMKE 589 (648)
Q Consensus 585 ~~m~~ 589 (648)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=1.7e-08 Score=85.79 Aligned_cols=102 Identities=10% Similarity=-0.034 Sum_probs=90.3
Q ss_pred CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH
Q 037816 490 RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566 (648)
Q Consensus 490 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 566 (648)
.+.| +...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3455 5667788888899999999999999988 4455 58889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 567 MANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 567 l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
++.+|...|++++|+..|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998854
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.83 E-value=8.8e-08 Score=92.91 Aligned_cols=218 Identities=11% Similarity=0.026 Sum_probs=145.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 037816 336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414 (648)
Q Consensus 336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (648)
.|++++|.+++++..+... .. +.+ .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3556666666666554311 10 111 35566666655543 345666777777777
Q ss_pred HHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHH
Q 037816 415 VFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKLEGV---EPT--DVTFLSLLHACSHVGLVNKGME 480 (648)
Q Consensus 415 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~ 480 (648)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6665431 11 34677788888888999999999888765311 121 3467778888888 99999999
Q ss_pred HHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChHHHHH
Q 037816 481 FLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD----VLVWQALLGACSIHGDSEMGKY 548 (648)
Q Consensus 481 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 548 (648)
.|++..+...-.. ...++..+...|.+.|++++|++.|++. .+ .++ ...+..++.++...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876421111 2467888999999999999999999887 11 122 2356666777888899999999
Q ss_pred HHHHHHhcCCCCCcc-----HHHHHHHHHhcCChHHHHH
Q 037816 549 AAEKLFLAQPDSPAP-----YILMANIYSCSGRWKERAK 582 (648)
Q Consensus 549 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 582 (648)
.+++++ ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88875543 34455555 5677766655
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=3.6e-08 Score=95.64 Aligned_cols=195 Identities=9% Similarity=-0.006 Sum_probs=148.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449 (648)
Q Consensus 371 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 449 (648)
.|++++|.+++++..+..-. . +.+ .++++.|...|.. ....|...|++++|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 46778888888887754311 1 122 5788888888765 45678889999999999998
Q ss_pred HHHcCC---CC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CC--ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816 450 MKLEGV---EP--TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI--SP--RAEHYACVVDMVGRAGLLIEARSFIER 520 (648)
Q Consensus 450 m~~~~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 520 (648)
..+... .+ -..+|..+...|...|++++|...|++..+.+.- .+ ...++..+...|.. |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 875311 11 1347888888999999999999999988764211 11 24578888999988 999999999988
Q ss_pred C-CCCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------ccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 521 M-PVKP---D----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP------APYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 521 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
. .+.| + ..++..+...|...|++++|+..++++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 1 45788888999999999999999999998766543 2667778888889999999999999
Q ss_pred HH
Q 037816 587 MK 588 (648)
Q Consensus 587 m~ 588 (648)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=7.5e-07 Score=85.65 Aligned_cols=161 Identities=10% Similarity=-0.044 Sum_probs=121.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 037816 429 SMIAAFARHGNGFKALELYEEMKLEGV-EPTDV----TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYA 499 (648)
Q Consensus 429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 499 (648)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887431 12211 2334666677888999999999999873111222 23688
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccH
Q 037816 500 CVVDMVGRAGLLIEARSFIERM-----PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPY 564 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 564 (648)
.+...|...|++++|...++++ ....+ ..++..+..+|.+.|++++|+..++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999988877 11112 3467888899999999999999999998755332 5688
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037816 565 ILMANIYSCSGR-WKERAKAIKRMKE 589 (648)
Q Consensus 565 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 589 (648)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998764
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.77 E-value=2.6e-08 Score=84.75 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=83.7
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5666777888888889999999988887 3344 6778888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037816 572 SCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~ 590 (648)
...|++++|++.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998774
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=1.1e-07 Score=101.18 Aligned_cols=146 Identities=10% Similarity=-0.062 Sum_probs=85.2
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816 372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYE 448 (648)
Q Consensus 372 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 448 (648)
|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56667777776666543 34456666677777777777777777766542 345566667777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 037816 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA---GLLIEARSFIERM 521 (648)
Q Consensus 449 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 521 (648)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 776643 234566666777777777777777777777653 223556666677777777 7777777777666
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.76 E-value=2.2e-07 Score=89.40 Aligned_cols=163 Identities=9% Similarity=-0.054 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI--SPR--A 495 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~ 495 (648)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+...- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445667788889999999999888775322 22 12334555667888999999999988753111 111 4
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------C
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM----PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD------S 560 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~ 560 (648)
.+++.+...|...|++++|...+++. ...|+ ..++..+..+|...|++++|+..++++++..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999876 11222 257888899999999999999999999865432 1
Q ss_pred CccHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037816 561 PAPYILMANIYSCSGRWKER-AKAIKRMKE 589 (648)
Q Consensus 561 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 589 (648)
..+|..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 46788999999999999999 777888754
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.76 E-value=2.3e-07 Score=100.49 Aligned_cols=190 Identities=12% Similarity=-0.016 Sum_probs=139.8
Q ss_pred hccCChhHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcC
Q 037816 369 GVDTSLGLGKQIHSLIIK-------SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHG 438 (648)
Q Consensus 369 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 438 (648)
...|++++|.+.++.+.. ...+.+...+..+..+|...|++++|...|+++. +.+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667788888888887771 1225566778888888889999999999988776 346778888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 518 (648)
++++|+..|++..+.. +-+...+..+..++...|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|++.|
T Consensus 482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988854 2256778888888999999999 9999998874 2336778888999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCCc
Q 037816 519 ERM-PVKPD-VLVWQALLGACSIHGD-----SEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 519 ~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 562 (648)
+++ ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 988 66776 4566677777666554 23333334444444444444
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=2.1e-07 Score=84.69 Aligned_cols=129 Identities=7% Similarity=-0.112 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 505 (648)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 4455666777888888888888776 3567778888888888888888888888888764 234667777888888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 506 GRAGLLIEARSFIERM-PVKPD-----------------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
...|++++|.+.|++. ...|+ ...+..+..++...|++++|...++++++..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888888776 22221 2567777778888888888888888888888775
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=5.8e-08 Score=79.86 Aligned_cols=94 Identities=9% Similarity=0.037 Sum_probs=55.3
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
..+......|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34444555555566666666655554 2233 355555566666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 037816 574 SGRWKERAKAIKRMKE 589 (648)
Q Consensus 574 ~g~~~~A~~~~~~m~~ 589 (648)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666555
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=1.9e-06 Score=82.24 Aligned_cols=217 Identities=9% Similarity=0.021 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhC---CCHH
Q 037816 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSDFTSNPFVNNGLINMY----SKC---GDLE 410 (648)
Q Consensus 340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 410 (648)
++|+.++.+++... +-+...++.--..+...+ +++++..+++.+.... +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666543 122233343333444444 5555555555555443 23333333322222 222 4444
Q ss_pred HHHHHHhhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHHH
Q 037816 411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGF--KALELYEEMKLEGVEPTDVTFLSLLHACSHVGL------VNKGM 479 (648)
Q Consensus 411 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~A~ 479 (648)
+++.+++.+. ++|..+|+.-.-.+.+.|+++ ++++.++++.+.. .-|...|+.-...+...+. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 5555444443 224444444444444444444 5555555555433 2233444433333333333 44444
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE-ARSFIERM-PV----KPDVLVWQALLGACSIHGDSEMGKYAAEKL 553 (648)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 553 (648)
+.++++... .+-|...|+.+...+.+.|+..+ +.++..++ .. ..++..+..+..+|.+.|+.++|+++++.+
T Consensus 207 ~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 207 NYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 444444432 12244444444444444443222 22333333 11 123334444444444444444444444444
Q ss_pred Hh-cCCCCC
Q 037816 554 FL-AQPDSP 561 (648)
Q Consensus 554 ~~-~~p~~~ 561 (648)
.+ .+|...
T Consensus 285 ~~~~Dpir~ 293 (306)
T 3dra_A 285 KSKYNPIRS 293 (306)
T ss_dssp HHTTCGGGH
T ss_pred HhccChHHH
Confidence 43 344433
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=7.1e-06 Score=84.66 Aligned_cols=82 Identities=7% Similarity=-0.040 Sum_probs=47.5
Q ss_pred CChhHHHHhhccCC--CCCcccHHHHHHHHHhcCC-chHHHHHHHHHHHc-CCCCCcHhHHHHHHHHhhc----cCChHH
Q 037816 103 DQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGE-FDMGFGFFKRSLEL-GFYQLDQASFTIILSACDR----SELSLV 174 (648)
Q Consensus 103 g~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~----~~~~~~ 174 (648)
|+++.+..+|+... .|+...|...+.-..+.+. .+....+|+..... |..|++...|..-+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 66777777777655 3566666666665555542 34556666665543 4445444466666665442 345666
Q ss_pred HHHHHHHHHH
Q 037816 175 SKMIHCLVYL 184 (648)
Q Consensus 175 a~~~~~~~~~ 184 (648)
+..+++..+.
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7777777765
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=2.9e-07 Score=84.69 Aligned_cols=185 Identities=12% Similarity=-0.011 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---HHH
Q 037816 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT-S-NPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSV---SWN 428 (648)
Q Consensus 357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~ 428 (648)
+...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|+++.+ | +.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677888999999999999999976422 1 235777889999999999999999998752 3 222 444
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816 429 SMIAAFAR------------------HGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVH 489 (648)
Q Consensus 429 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 489 (648)
.+..++.. .|++++|...|+++.+.. |+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 578999999999999853 5432 2221111 001111111
Q ss_pred CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 490 RISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 490 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|+.++|++.++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234677889999999999999988 33444 256788889999999999999999999888887654
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=5.7e-07 Score=81.48 Aligned_cols=183 Identities=13% Similarity=0.009 Sum_probs=121.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406 (648)
Q Consensus 328 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (648)
.....+...|++++|+..|++..+.. |+.. .+.. . . .... ..........+..+|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-~-~---~~~~--------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-T-N---VDKN--------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-H-H---SCTT--------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-h-h---hcch--------------hhhhHHHHHHHHHHHHHC
Confidence 34456778899999999999887753 4332 2211 0 0 0000 011122334578888899
Q ss_pred CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--HHHHHHH
Q 037816 407 GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL--VNKGMEF 481 (648)
Q Consensus 407 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~ 481 (648)
|++++|...|++.. +.+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|. .+.+...
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999998775 3467888899999999999999999999999864 3356778888877766554 3445555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037816 482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG 535 (648)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 535 (648)
++... ...|....+.....++...|++++|...|++. ...|+......+.+
T Consensus 147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55542 22333334445566777789999999999987 77888765554443
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.71 E-value=1.4e-07 Score=77.52 Aligned_cols=109 Identities=8% Similarity=-0.072 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC 537 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 537 (648)
..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45667778888899999999999988774 3447888888899999999999999998887 4444 477899999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
...|++++|+..|+++++.+|+++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999888887765
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=2.2e-07 Score=80.50 Aligned_cols=127 Identities=8% Similarity=-0.028 Sum_probs=98.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACS 538 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 538 (648)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877763 2336777777888888888888888888776 3333 5777888888999
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCccHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 037816 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANI--YSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 589 (648)
..|++++|+..++++++..|.+..++..+..+ +...|++++|++.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988877554444 7788999999999887654
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=1.9e-07 Score=82.15 Aligned_cols=156 Identities=10% Similarity=-0.016 Sum_probs=113.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA-CSH 471 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~ 471 (648)
+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34456677888899999998888773 466778888888888999999999888877643 444333222211 122
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~ 547 (648)
.+....|...+++..+. .+.+...+..+...+...|++++|...|+++ ...|+ ...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467888888763 2336788888999999999999999999887 55554 557888888899999999999
Q ss_pred HHHHHHHh
Q 037816 548 YAAEKLFL 555 (648)
Q Consensus 548 ~~~~~~~~ 555 (648)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888754
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=1e-05 Score=83.52 Aligned_cols=366 Identities=10% Similarity=-0.043 Sum_probs=204.8
Q ss_pred cC-CchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC-hhHH
Q 037816 133 NG-EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS-SSSG 210 (648)
Q Consensus 133 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 210 (648)
.| +.+.|..+|+++...- |. ++.+.+..+|+..... .|+...|...+....+.++ .+..
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 3677777777766531 21 7888888888888763 4688888888877776653 3444
Q ss_pred HHHhcccCC------CCcccHHHHHHHHH----HCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh---ccCChHHHH
Q 037816 211 RKVFGEMRV------RNVITWTAVISGLV----QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS---GLQALCEGR 277 (648)
Q Consensus 211 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~a~ 277 (648)
..+|+.... .+...|...+..+. ..|+.+.+.++|++... +++.. +..+-..|. ...+...+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~--~P~~~--~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ--TPMGS--LSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--SCCTT--HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh--Chhhh--HHHHHHHHHHHHHHhccccHH
Confidence 555554431 24455666555433 23566778888888876 22211 111111111 111122222
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcC-------CHHHHHHHH
Q 037816 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNG-------FEEEAMQLF 346 (648)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-------~~~~a~~~~ 346 (648)
.++.+.. +.+..|..+++.+.. .+...|...+.--...+ ..+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 2222211 112222222222211 12223433333221110 034566788
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH-HHHHHhhcC--C--
Q 037816 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED-SIKVFSRMA--P-- 421 (648)
Q Consensus 347 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~--~-- 421 (648)
+++.... +.+...|...+.-+...|+.+.|..+++..... |.+...+.. |....+.++ ...+.+... .
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence 8877753 555777777777777888999999999998887 444433332 222111111 111222111 0
Q ss_pred -----C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCC
Q 037816 422 -----R---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-VGLVNKGMEFLKSMTEVHRIS 492 (648)
Q Consensus 422 -----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~ 492 (648)
+ ....|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+ +
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~ 351 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P 351 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C
Confidence 1 1245666666666778889999999988 32 12344444332222122 336889999999988853 2
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566777887888899999999999982 2467777777777778999988888888764
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.69 E-value=1.9e-07 Score=78.79 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=83.2
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556667777888889999999888887 3344 5777888888999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037816 572 SCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~ 590 (648)
...|++++|++.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998774
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=8.2e-07 Score=80.69 Aligned_cols=129 Identities=10% Similarity=-0.010 Sum_probs=111.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 475 (648)
+..+...+...|++++|...|++..+++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566778899999999999999988888999999999999999999999999999864 44678888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 037816 476 NKGMEFLKSMTEVHRISPRA----------------EHYACVVDMVGRAGLLIEARSFIERM-PVKPDV 527 (648)
Q Consensus 476 ~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 527 (648)
++|...++++.+. .+.+. ..+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999873 22233 78889999999999999999999998 666764
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=9.9e-07 Score=84.41 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHH-HHHHH
Q 037816 357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWN-SMIAA 433 (648)
Q Consensus 357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~l~~~ 433 (648)
+...+..+...+...|+++.|...++.+.... |.+...+..+...+.+.|++++|...++++.. |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34445555556666667777777766666554 44566677777777777788888777777753 3322221 12223
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 513 (648)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666667777777776653 3355666677777777777777777777776641111125566666666666666666
Q ss_pred HHHHHHh
Q 037816 514 ARSFIER 520 (648)
Q Consensus 514 A~~~~~~ 520 (648)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=1.3e-05 Score=76.42 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=167.6
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--CHHHHHHHHhhcC---CCChhHHHHHHHHH----HHc---CCh
Q 037816 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG--DLEDSIKVFSRMA---PRNSVSWNSMIAAF----ARH---GNG 440 (648)
Q Consensus 373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~ 440 (648)
..++|....+.+...+ |.+..+++.--..+...| +++++++.++.+. +.+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457888888888776 556677888788888888 9999999999876 34566676655554 455 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC------HH
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN--KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL------LI 512 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 512 (648)
++++.+++++.+.. +-|...|+.-...+.+.|.++ ++++.++++.+. -+-|-..|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999865 447788887777777788887 999999999884 33477788777777777776 89
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcC---CCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816 513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQ---PDSPAPYILMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 586 (648)
++++.++++ ...| |...|+.+...+.+.|+. +....+.+++.+.+ |.++.++..++.+|.+.|+.++|+++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998887 3344 677888888888888874 44556777777665 78888999999999999999999999999
Q ss_pred HHh
Q 037816 587 MKE 589 (648)
Q Consensus 587 m~~ 589 (648)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=6.4e-08 Score=92.40 Aligned_cols=192 Identities=10% Similarity=-0.003 Sum_probs=124.9
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816 392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA 468 (648)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 468 (648)
+...+..+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455666677777788888877777654 3366777778888888888888888888887743 2356677778888
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
+...|++++|...|+++.+. .| +...+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 88888888888888887663 22 11111111221111111111111 122233344444433422 2 368999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037816 548 YAAEKLFLAQPDSPAPYILMANIYSCS-GRWKERAKAIKRMKEM 590 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 590 (648)
+.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777766 7789999999988653
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=4.6e-07 Score=73.96 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGA 536 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 536 (648)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445666667777777777777777777663 2335666777777777888888888777776 22 3356777888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 575 (648)
+...|++++|...++++.+..|.++.++..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999888988888888887776544
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=4.6e-06 Score=80.05 Aligned_cols=201 Identities=5% Similarity=-0.086 Sum_probs=138.1
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 037816 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV---NNGLINMYSKCGDLEDSIKVFSRMAPR 422 (648)
Q Consensus 346 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (648)
+.++......|+..++..+...+...- +.+.......+... +...+..+...|++++|...+++....
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 334433334677777666666554321 11121111222222 223467788999999999999886532
Q ss_pred ---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 423 ---NS------VSWNSMIAAFARHGNGFKALELYEEMKLEGVE-PT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 423 ---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
+. ..+..+...+...|++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 13334666677788999999999999984322 22 236888999999999999999999998752
Q ss_pred c----CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 037816 489 H----RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGD-SEMGKYAAEKLF 554 (648)
Q Consensus 489 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 554 (648)
. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..+|..+..++.+.|+ +++|+..+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1112 3447888999999999999999999876 22222 6778889999999995 699999999987
Q ss_pred h
Q 037816 555 L 555 (648)
Q Consensus 555 ~ 555 (648)
.
T Consensus 265 ~ 265 (293)
T 3u3w_A 265 F 265 (293)
T ss_dssp H
T ss_pred H
Confidence 5
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.62 E-value=3.8e-07 Score=75.53 Aligned_cols=116 Identities=9% Similarity=-0.049 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA 536 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 536 (648)
...+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 445555666666666666666666666542 2235566666666666777777777766665 2223 46677778888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR 576 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 576 (648)
+...|++++|+..++++++..|.+..++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999988888888888888888877664
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=3.4e-07 Score=75.46 Aligned_cols=117 Identities=12% Similarity=-0.046 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA 536 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 536 (648)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666777777788888777777663 2335667777777788888888888887776 3333 46778888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCCh
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 577 (648)
+...|++++|...++++++..|.++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888899999988888875
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=1.5e-07 Score=82.81 Aligned_cols=120 Identities=7% Similarity=0.059 Sum_probs=80.3
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--H
Q 037816 470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA-CSIHGDS--E 544 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~ 544 (648)
...|++++|...+++..+. .+.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666676777666653 2335566667777777777777777777666 2223 45566666666 6677777 8
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
+|+..++++++..|.++.++..++.+|...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888777778888888888888888888888777643
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.55 E-value=4.8e-07 Score=88.73 Aligned_cols=94 Identities=13% Similarity=-0.032 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+|...|++++|+..|+++++.+|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888888888899999999888887 4444 57788899999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 037816 573 CSGRWKER-AKAIKRMK 588 (648)
Q Consensus 573 ~~g~~~~A-~~~~~~m~ 588 (648)
..|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666664
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.2e-07 Score=74.69 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777778888888888888776 3334 57778888888888899999999999999999988888999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037816 573 CSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 573 ~~g~~~~A~~~~~~m~~~ 590 (648)
..|++++|++.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999998888764
No 134
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=5.8e-06 Score=74.98 Aligned_cols=158 Identities=11% Similarity=0.024 Sum_probs=98.4
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCchhHHH
Q 037816 322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----SLGLGKQIHSLIIKSDFTSNPFVNN 397 (648)
Q Consensus 322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 397 (648)
++..+..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|..+++...+.| ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555556666666667777776666654 34445555555555 4 6777777777766554 445555
Q ss_pred HHHHHHHh----CCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816 398 GLINMYSK----CGDLEDSIKVFSRMAPRN-----SVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLS 464 (648)
Q Consensus 398 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 464 (648)
.|...|.. .+++++|...|++..+.+ ...+..|...|.. .+++++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666655 667777777777765432 4666667777776 66777777777777765 133445555
Q ss_pred HHHHHhcc-C-----cHHHHHHHHHHhHHh
Q 037816 465 LLHACSHV-G-----LVNKGMEFLKSMTEV 488 (648)
Q Consensus 465 ll~~~~~~-g-----~~~~A~~~~~~~~~~ 488 (648)
|...|... | ++++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555432 2 677777777777664
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.53 E-value=5.9e-07 Score=71.66 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCccHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMAN 569 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 569 (648)
+...+..+...+...|++++|...+++. ... .+...+..+..++...|++++|+..++++++..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4566777888888888888888888877 333 35777888888899999999999999999999999 8899999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 037816 570 IYSCS-GRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 570 ~~~~~-g~~~~A~~~~~~m~~~~~ 592 (648)
++... |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=2.1e-06 Score=82.51 Aligned_cols=161 Identities=6% Similarity=-0.086 Sum_probs=118.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037816 395 VNNGLINMYSKCGDLEDSIKVFSRMAP---RNS------VSWNSMIAAFARHGNGFKALELYEEMKLEGV---EPT--DV 460 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~ 460 (648)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566778888999999888875431 111 2334455667778899999999999876321 122 44
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC------CC-CH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PV------KP-DV 527 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 527 (648)
+++.+...|...|++++|...++++.+.....|+ ..++..+...|.+.|++++|++.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732111222 258888999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 037816 528 LVWQALLGACSIHGDSEMG-KYAAEKLFL 555 (648)
Q Consensus 528 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 555 (648)
.+|..+..+|...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 778888865
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.52 E-value=6.7e-07 Score=75.80 Aligned_cols=105 Identities=8% Similarity=-0.086 Sum_probs=85.8
Q ss_pred CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037816 455 VEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQ 531 (648)
Q Consensus 455 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 531 (648)
+.| +...+..+...+.+.|++++|...|+++.+. -+.+...|..+..+|...|++++|++.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 345 3446777778888999999999999999874 2347888889999999999999999999888 4445 467788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 561 (648)
.+..+|...|++++|+..|+++++..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999988763
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.49 E-value=3e-07 Score=75.71 Aligned_cols=95 Identities=7% Similarity=-0.030 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------cHHH
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-------PYIL 566 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 566 (648)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++..|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777788888888888888776 4444 4667888888888888888888888888888776653 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037816 567 MANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 567 l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++.++...|++++|++.+++.++.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777888888899999888887663
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=2.1e-06 Score=74.32 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA 536 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 536 (648)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666677777777777777777653 2235666666677777777777777776666 3333 35566666666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
|...|++++|+..++++++..|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 7777777777777777777777666644433
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.48 E-value=1.6e-06 Score=77.97 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=84.8
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHhhhcCCH
Q 037816 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISP-RAEHYACVVDMVGRAGLL 511 (648)
Q Consensus 436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 511 (648)
..|++++|.++++.+.. ........+..+...+...|++++|...+++..+.. +..| ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 111233455555555566666666666666554411 1111 334555566666666666
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----CccHHHHHHHHHhcCC
Q 037816 512 IEARSFIERM-P---VKP-D----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP--DS----PAPYILMANIYSCSGR 576 (648)
Q Consensus 512 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 576 (648)
++|.+.+++. . ..+ + ...+..+...+...|++++|+..++++++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554 1 011 2 33456666777777888888887777765422 11 1235677778888888
Q ss_pred hHHHHHHHHHHHh
Q 037816 577 WKERAKAIKRMKE 589 (648)
Q Consensus 577 ~~~A~~~~~~m~~ 589 (648)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777655
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=2.6e-07 Score=78.43 Aligned_cols=106 Identities=8% Similarity=-0.114 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLG 535 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 535 (648)
+...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|++.|++. ...| ++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3445666777788888888998888888763 3347778888888888899999999888887 3444 4677888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYI 565 (648)
Q Consensus 536 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 565 (648)
+|...|++++|+..++++++..|.++....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 999999999999999999999988776543
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1.3e-06 Score=72.79 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 493 PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
.+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++..|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777778888888888877776 3333 467788888888888888888888888888888888888888888
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 037816 571 YSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 571 ~~~~g~~~~A~~~~~~m~~~ 590 (648)
|...|++++|+..+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888764
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6.3e-07 Score=72.98 Aligned_cols=96 Identities=13% Similarity=-0.002 Sum_probs=83.8
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556777888999999999999988 4445 578888899999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 037816 574 SGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 574 ~g~~~~A~~~~~~m~~~~ 591 (648)
.|++++|+..+++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999987743
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=1.2e-06 Score=78.57 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777788888888888888888877 3334 577888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHHhCC
Q 037816 574 SGRWKERA-KAIKRMKEMG 591 (648)
Q Consensus 574 ~g~~~~A~-~~~~~m~~~~ 591 (648)
.|+.+++. ..++.|...|
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5666665544
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.44 E-value=1.5e-06 Score=76.31 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=101.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-hhhcCCH--
Q 037816 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM-VGRAGLL-- 511 (648)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 511 (648)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999998888754 346778888889999999999999999999874 23467788888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccH
Q 037816 512 IEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY 564 (648)
Q Consensus 512 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 564 (648)
++|...++++ ...| +...+..+..++...|++++|+..++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 4444 477788888999999999999999999999999986543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=1.6e-06 Score=80.65 Aligned_cols=123 Identities=11% Similarity=-0.066 Sum_probs=69.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV----LVWQALLGACSIH 540 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 540 (648)
+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 344455666666666666666431 232224444555666666666666666655222322 2455556666666
Q ss_pred CChHHHHHHHHHHHhcC--CC-CCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 541 GDSEMGKYAAEKLFLAQ--PD-SPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666665332 22 2235556666666666666666666666553
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=2.9e-06 Score=68.26 Aligned_cols=108 Identities=12% Similarity=0.027 Sum_probs=55.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACS 538 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 538 (648)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444455555555555555555442 1224444455555555555555555555544 2222 3445555555566
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
..|++++|...++++.+..|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666655555444443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=2e-06 Score=69.19 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++++..|.++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778888999999999999999988 3344 6788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037816 572 SCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~~ 591 (648)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999998753
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.42 E-value=6.3e-07 Score=75.14 Aligned_cols=91 Identities=19% Similarity=0.065 Sum_probs=70.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CC
Q 037816 500 CVVDMVGRAGLLIEARSFIERM-PVKPD-------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA-------QP 558 (648)
Q Consensus 500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p 558 (648)
.....+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455555555555555544 22222 337888888999999999999999999999 99
Q ss_pred CCCccH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 559 DSPAPY----ILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 559 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
++...| ...+.++...|++++|+..|++..+.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999 99999999999999999999998773
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.6e-06 Score=71.97 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=57.6
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 568 (648)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..+|...|++++|+..++++++..|.++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3444555555555666666666666555 44444 345555555666666666666666666666666666666666
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 037816 569 NIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 569 ~~~~~~g~~~~A~~~~~~m~~ 589 (648)
.++...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-06 Score=71.34 Aligned_cols=98 Identities=9% Similarity=0.026 Sum_probs=89.7
Q ss_pred CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816 493 PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570 (648)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 570 (648)
.+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 36778888999999999999999999988 5555 678889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 037816 571 YSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 571 ~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...|++++|++.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998774
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=2e-06 Score=69.99 Aligned_cols=96 Identities=18% Similarity=0.244 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++|+..++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999988 333 457888899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037816 573 CSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 573 ~~g~~~~A~~~~~~m~~~ 590 (648)
..|++++|.++++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999999774
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=3e-06 Score=78.81 Aligned_cols=135 Identities=15% Similarity=0.047 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHh
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMV 505 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 505 (648)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .| ....+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 345566777888888888887777644 65445555555678888888888888765431 1 12 134677788888
Q ss_pred hhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 506 GRAGLLIEARSFIERM--PVK-PD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
...|++++|++.|++. +.. |. ...+.....++.+.|+.++|...|+++...+|. +.+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8999999999998887 211 43 345667777888999999999999999999987 5555444
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=2.7e-06 Score=76.46 Aligned_cols=152 Identities=11% Similarity=-0.028 Sum_probs=91.5
Q ss_pred hCCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHH
Q 037816 405 KCGDLEDSIK---VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TDVTFLSLLHACSHVGLVN 476 (648)
Q Consensus 405 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~ 476 (648)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 443322234455666666677777777777777666541 1112 2345666666777777777
Q ss_pred HHHHHHHHhHHhcCCCC-----ChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 037816 477 KGMEFLKSMTEVHRISP-----RAEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLVWQALLGACSIHGDS 543 (648)
Q Consensus 477 ~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 543 (648)
+|...+++..+...-.+ ....+..+...+...|++++|.+.+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777777655311111 2345666777777788888877777665 11122 23356677778888888
Q ss_pred HHHHHHHHHHHhc
Q 037816 544 EMGKYAAEKLFLA 556 (648)
Q Consensus 544 ~~A~~~~~~~~~~ 556 (648)
++|...++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=5.7e-06 Score=71.39 Aligned_cols=128 Identities=11% Similarity=-0.050 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 355667777788888888888888887754 336777778888888888888888888888774 33467778888888
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCChHHHHHHHHHHHh
Q 037816 505 VGRAGLLIEARSFIERM-PVKP-DVLVWQA--LLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
+...|++++|.+.+++. ...| +...+.. .+..+...|++++|+..+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88889999998888887 3333 3444433 33346778889999888887654
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.2e-06 Score=69.27 Aligned_cols=110 Identities=8% Similarity=-0.116 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC 537 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 537 (648)
..+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777663 2335677777777777778888887777776 3344 466778888888
Q ss_pred HHcCChHHHHHHHHHHHhcC------CCCCccHHHHHHHH
Q 037816 538 SIHGDSEMGKYAAEKLFLAQ------PDSPAPYILMANIY 571 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 571 (648)
...|++++|+..++++++.. |.+..+...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77766666665544
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.35 E-value=2.4e-06 Score=71.85 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC 537 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 537 (648)
..+..+...+...|++++|...|+++... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555566677778888888888887763 2336777777888888888888888888777 3334 456677788888
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
...|++++|+..++++++..|.++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 99999999999999999988887766554433
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=5.4e-06 Score=71.63 Aligned_cols=94 Identities=16% Similarity=-0.024 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+. .+.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344555555555555555555555555532 224445555555555555555555555555542 12245555555555
Q ss_pred hhhcCCHHHHHHHHHhC
Q 037816 505 VGRAGLLIEARSFIERM 521 (648)
Q Consensus 505 ~~~~g~~~~A~~~~~~~ 521 (648)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555554
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=4.1e-06 Score=68.77 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5667888899999999999999999987 3334 6788889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037816 572 SCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 572 ~~~g~~~~A~~~~~~m~~~ 590 (648)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=7.3e-05 Score=71.99 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+.++.+...++++|...|+.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45556777888888888888888888888754
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00029 Score=67.86 Aligned_cols=231 Identities=11% Similarity=0.025 Sum_probs=159.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-C-CHH
Q 037816 334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-G-DLE 410 (648)
Q Consensus 334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~ 410 (648)
.+.+..++|+++++++.... +-+...++.--..+...+ .++++..+++.+.... +.+..+|+.-...+.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 33445567888888887764 223444555445555566 4888888888888665 56666777666666665 6 788
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----
Q 037816 411 DSIKVFSRMAP---RNSVSWNSMIAAFARHGNGF--------KALELYEEMKLEGVEPTDVTFLSLLHACSHVGL----- 474 (648)
Q Consensus 411 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----- 474 (648)
+++++++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999988874 35666766555555555555 8999999999875 3477788887777777765
Q ss_pred --HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH--------------------HHHHHHHHhC-CC-------C
Q 037816 475 --VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL--------------------IEARSFIERM-PV-------K 524 (648)
Q Consensus 475 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~ 524 (648)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++ +. .
T Consensus 222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 78899999988874 344778888777777776653 4455555555 22 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCccHHHHHH
Q 037816 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMAN 569 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~ 569 (648)
+.+..+..|+..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 568888999999999999999999999997 567765555544433
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=4.2e-06 Score=72.18 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4567778888888999999999999999999998889999999999999999999999888774
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=7.6e-06 Score=77.90 Aligned_cols=189 Identities=10% Similarity=-0.062 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 037816 358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAF 434 (648)
Q Consensus 358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 434 (648)
...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555555666666666666666666553 44667777888888888888888888887653 3567888888899
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816 435 ARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513 (648)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 513 (648)
...|++++|+..|++..+.+ |+. ..+...+....+ ...+... ...... ..+.+......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHH
Confidence 99999999999998887643 311 111111111111 1111121 222222 4455665555554433 689999
Q ss_pred HHHHHHhC-CCCCCHHHHHH-HHHHHHHc-CChHHHHHHHHHHHhc
Q 037816 514 ARSFIERM-PVKPDVLVWQA-LLGACSIH-GDSEMGKYAAEKLFLA 556 (648)
Q Consensus 514 A~~~~~~~-~~~p~~~~~~~-l~~~~~~~-g~~~~A~~~~~~~~~~ 556 (648)
|.+.+++. ...|+...... +...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99988887 66776544433 33334444 6788899999888753
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-05 Score=67.92 Aligned_cols=113 Identities=9% Similarity=-0.084 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037816 458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQ 531 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 531 (648)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666666677777777777776654 2343 566667777777777777777777766 3333 467778
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573 (648)
Q Consensus 532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 573 (648)
.+..++...|++++|...++++++..|.+..++..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888999999999999999999999887777776665443
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.28 E-value=2.4e-06 Score=70.33 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=55.2
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHHHHH
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKPD-V---LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYS 572 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 572 (648)
+...+...|++++|.+.|+++ ...|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444555566666666666555 22222 1 355556666666677777777777776666666 455666666777
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037816 573 CSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 573 ~~g~~~~A~~~~~~m~~~ 590 (648)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666553
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=5.7e-06 Score=68.83 Aligned_cols=101 Identities=7% Similarity=-0.156 Sum_probs=76.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 037816 457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALL 534 (648)
Q Consensus 457 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 534 (648)
.+...+..+...+...|++++|...|++.... .+.+...+..+..+|...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35666777777777888888888888877763 2335677777788888888888888888776 3334 467788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCC
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~ 559 (648)
.++...|++++|+..++++++..|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888889999999999988888776
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=1.9e-06 Score=77.33 Aligned_cols=96 Identities=9% Similarity=-0.059 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-----------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
...+..+...+.+.|++++|.+.|++. ...|+ ...+..+..+|...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555666666777777777777665 22221 267888889999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 557 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.|.++.++..++.+|...|++++|++.+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999774
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00024 Score=68.08 Aligned_cols=177 Identities=11% Similarity=0.077 Sum_probs=93.5
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHH
Q 037816 410 EDSIKVFSRMA---PRNSVSWNSMIAAFARHG--NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL-VNKGMEFLK 483 (648)
Q Consensus 410 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~ 483 (648)
++++.+++.+. +.+..+|+.-.-.+.+.+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444432 234444544444444444 2555666666655543 2244444444444444444 455556655
Q ss_pred HhHHhcCCCCChhHHHHHHHHhhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 037816 484 SMTEVHRISPRAEHYACVVDMVGRA--------------GLLIEARSFIERM-PVKP-DVLVWQALLGACSIH------- 540 (648)
Q Consensus 484 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 540 (648)
++.+. .+-|...|+.....+.+. +.++++++.+++. ...| |...|+.+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 55553 222444444444443333 3355666666555 2233 344555444443333
Q ss_pred ----CChHHHHHHHHHHHhcCCCCCccHHHHHHH---HHhcCChHHHHHHHHHHHh
Q 037816 541 ----GDSEMGKYAAEKLFLAQPDSPAPYILMANI---YSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 541 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~ 589 (648)
+.++++++.++++++..|++..++..++.. ....|..++...++.++.+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 357788888888888888876555444432 2245777788888888876
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=4.9e-06 Score=68.35 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=78.3
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CccHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-------PAPYI 565 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 565 (648)
...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777788888888888888776 22 3357778888888999999999999999998887765 67888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 566 LMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 566 ~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.++.++...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998774
No 170
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=1.2e-06 Score=70.80 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816 508 AGLLIEARSFIERM-PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK 582 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 582 (648)
.|++++|+..|++. .. .| +...+..+..+|...|++++|+..++++++..|+++.++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555566665555 33 13 234455666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 037816 583 AIKRMKE 589 (648)
Q Consensus 583 ~~~~m~~ 589 (648)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.19 E-value=6.9e-06 Score=65.25 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 037816 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP---DVLVWQALLG 535 (648)
Q Consensus 460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 535 (648)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445555666666666666666666653 2234556666666777777777777777665 3333 4666777777
Q ss_pred HHHHc-CChHHHHHHHHHHHhcCCCCC
Q 037816 536 ACSIH-GDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 536 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 561 (648)
++... |++++|++.++++....|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77778 888888888888887777654
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.18 E-value=1.7e-05 Score=65.12 Aligned_cols=103 Identities=10% Similarity=0.001 Sum_probs=70.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRA---EHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGA 536 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 536 (648)
+...+...|++++|...|+++.+. .+.+. ..+..+..+|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445566677777777777777663 12223 46666777777777777777777776 22333 5567777888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
+...|++++|+..++++++..|+++.+......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 888899999999999998888887655444433
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.18 E-value=3.9e-06 Score=86.47 Aligned_cols=117 Identities=9% Similarity=-0.032 Sum_probs=90.1
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE 544 (648)
Q Consensus 467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 544 (648)
..+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888888763 2335777888888888888888888888877 4444 4677888888899999999
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHH--HHhcCChHHHHHHHH
Q 037816 545 MGKYAAEKLFLAQPDSPAPYILMANI--YSCSGRWKERAKAIK 585 (648)
Q Consensus 545 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 585 (648)
+|++.++++++..|.+..++..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988888888887 788899999998887
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.1e-05 Score=69.05 Aligned_cols=128 Identities=12% Similarity=0.035 Sum_probs=75.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLV 529 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~ 529 (648)
+..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444555555555555544432100011 124455555566666666666655554 10111 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFLAQPD------SPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+..+...+...|++++|+..++++++..+. ...++..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666677778888888888888887754321 235677888888899999999988888765
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=1.9e-05 Score=81.02 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=76.7
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816 495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS 572 (648)
Q Consensus 495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 572 (648)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467778888888999999999988887 3344 57788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHHh
Q 037816 573 CSGRWKERAK-AIKRMKE 589 (648)
Q Consensus 573 ~~g~~~~A~~-~~~~m~~ 589 (648)
+.|+++++.. .+++|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998874 4565544
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.17 E-value=1.4e-05 Score=65.47 Aligned_cols=107 Identities=8% Similarity=-0.017 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 037816 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV----KPD----VLVWQA 532 (648)
Q Consensus 462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 532 (648)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555442 1224445555555555555555555555554 11 122 455666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+..++...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77777777888888888888777776 455555554443
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.9e-05 Score=80.49 Aligned_cols=164 Identities=9% Similarity=-0.104 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-Chh
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDV----TFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISP-RAE 496 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~ 496 (648)
.+..+...|...|++++|.+.+.++.+.- ..++.. ..+.+-..+...|+++.|..+++...... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667888888888888888888776521 112221 22333344456788999998888775421 2222 355
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----C
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-----P--VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ---PDS----P 561 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~ 561 (648)
++..+...|...|++++|..++++. + .+|. ..++..++..|...|++++|..+++++.... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788899999999999999998876 1 1222 4567888889999999999999999987543 222 2
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 562 APYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+..++..+...|++++|...+.+..+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566777888889999999988877754
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=7.7e-06 Score=66.39 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=62.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH 540 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 540 (648)
..+...+.+.|++++|...++++.+. -+.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445566677777777777777663 2336666677777777777777777777766 4444 456677777778888
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 037816 541 GDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~ 561 (648)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888887777653
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.14 E-value=0.00042 Score=66.40 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=128.9
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHH
Q 037816 374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG--DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGN-GFKALELY 447 (648)
Q Consensus 374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 447 (648)
++.+..+++.+.... |-+..+|+.-.-++.+.| .+++++.+++.+. +.|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666544 456666666655666666 3778888877765 4466777777667777777 58888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc-----
Q 037816 448 EEMKLEGVEPTDVTFLSLLHACSHV--------------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA----- 508 (648)
Q Consensus 448 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 508 (648)
+++.+.. +-|...|+.....+... +.++++++.++..... .+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 8888865 33666666555444333 4578888888888764 233677776665555554
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 509 ------GLLIEARSFIERM-PVKPDVLVWQALLGAC-----SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 509 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.+++|....-|..+...+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 4578888888888 556664 343322222 2357788999999999999999877777665544
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.10 E-value=1.6e-05 Score=78.71 Aligned_cols=90 Identities=9% Similarity=-0.080 Sum_probs=80.0
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+..+|..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++..|.+..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677888999999999999999999988 5556 4778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 037816 572 SCSGRWKERAKA 583 (648)
Q Consensus 572 ~~~g~~~~A~~~ 583 (648)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
No 181
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.09 E-value=3.8e-05 Score=75.10 Aligned_cols=129 Identities=12% Similarity=-0.009 Sum_probs=99.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT----------------DVTFLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
+...+..+...|.+.|++++|+..|++..+.. |+ ...|..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677777888888888888888887754 33 4778888888889999999999999988
Q ss_pred HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 037816 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMG-KYAAEKLFL 555 (648)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 555 (648)
+. .+.+...+..+..+|...|++++|+..|+++ .+.| +...+..+..++...|+.++| ...+++++.
T Consensus 224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 2347788888889999999999999998887 4445 466788888888888888888 446666653
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=9.6e-06 Score=79.48 Aligned_cols=148 Identities=10% Similarity=-0.064 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816 424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD 503 (648)
Q Consensus 424 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 503 (648)
...+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666667777788888888888887764 354432 223344444332221 136778888
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH-hcCChHHH
Q 037816 504 MVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS-CSGRWKER 580 (648)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 580 (648)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++..|.++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988887 4444 57778888888999999999999999999999998888888887744 45677788
Q ss_pred HHHHHHHHhCC
Q 037816 581 AKAIKRMKEMG 591 (648)
Q Consensus 581 ~~~~~~m~~~~ 591 (648)
...|++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888886643
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=4e-05 Score=78.91 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=50.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|...++++.+. .+.+...+..+..+|...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555554432 123444555555555555555555555555441 122444555555555555555555
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHH--HHHcCChHHHHHHHH
Q 037816 515 RSFIERM-PVKPD-VLVWQALLGA--CSIHGDSEMGKYAAE 551 (648)
Q Consensus 515 ~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 551 (648)
.+.+++. ...|+ ...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555544 11221 1222222222 445555555555555
No 184
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=5.4e-05 Score=61.92 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444455555555555555544432 11334444444455555555555555554443
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.02 E-value=1.3e-05 Score=69.00 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=62.5
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-ccHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP-APYILMANI 570 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 570 (648)
+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..++++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888888899999999999988887 4444 477888899999999999999999999999999987 444444444
Q ss_pred H
Q 037816 571 Y 571 (648)
Q Consensus 571 ~ 571 (648)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.0001 Score=75.09 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=117.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 037816 432 AAFARHGNGFKALELYEEMKLEGVEPT----------------DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA 495 (648)
Q Consensus 432 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 495 (648)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677888888888888876432111 1246778899999999999999999987643322322
Q ss_pred ----hHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 037816 496 ----EHYACVVDMVGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ------ 557 (648)
Q Consensus 496 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 557 (648)
.+.+.+...+...|++++|.++++.. +..+. ..++..+...+...|++++|..+++++....
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23444555666789999999988776 22333 5677888999999999999999999987532
Q ss_pred CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345888999999999999999999998765
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.99 E-value=2.3e-05 Score=65.60 Aligned_cols=102 Identities=12% Similarity=-0.032 Sum_probs=72.0
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-------
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPR-------------AEHYACVVDMVGRAGLLIEARSFIERM-PV------- 523 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------- 523 (648)
....+...|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334445555555555555555542 121 226777777777777777777777665 44
Q ss_pred CCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 524 KPD-VLVW----QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 524 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
.|+ ...| .....++...|++++|+..|++++++.|.+..++..+..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 776 5567 888999999999999999999999999998877655543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=5.5e-06 Score=66.85 Aligned_cols=92 Identities=14% Similarity=0.059 Sum_probs=65.0
Q ss_pred cCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVHR--ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
.|++++|+..|+++.+. + -+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777652 2 1225667777778888888888888888777 3334 4667778888888889999999
Q ss_pred HHHHHHHhcCCCCCccH
Q 037816 548 YAAEKLFLAQPDSPAPY 564 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~~ 564 (648)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99998888888876543
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=3.6e-05 Score=65.76 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Chh
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAE 496 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~ 496 (648)
++..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555666666666666665553210 011 13455566666777777777777777654211111 144
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816 497 HYACVVDMVGRAGLLIEARSFIERM-------PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ 557 (648)
Q Consensus 497 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 557 (648)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666777777778877777777665 1111 13456677778888899999999998887653
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.96 E-value=0.00033 Score=73.40 Aligned_cols=169 Identities=10% Similarity=0.042 Sum_probs=135.4
Q ss_pred CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 037816 408 DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGN----------GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG- 473 (648)
Q Consensus 408 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g- 473 (648)
..++|.+.++.+. +.+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456777777765 3355667766666666666 899999999999865 347778888888888888
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 037816 474 -LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG-LLIEARSFIERM-PVKP-DVLVWQALLGACSIH--------- 540 (648)
Q Consensus 474 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 540 (648)
+++++++.++++.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999884 2347888888888888888 899999999988 5555 577788877776663
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHH
Q 037816 541 -----GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579 (648)
Q Consensus 541 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 579 (648)
+.++++++.+++++..+|.+..+|..+..++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=3.8e-05 Score=59.70 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+...+..+..+|...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788889999999999999999999999999999999999999999999999999999998764
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.1e-06 Score=67.37 Aligned_cols=93 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYI 565 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 565 (648)
+...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++..|.+ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888888888888888877 3334 57778888888999999999999999999999988 66777
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037816 566 LMANIYSCSGRWKERAKAIKR 586 (648)
Q Consensus 566 ~l~~~~~~~g~~~~A~~~~~~ 586 (648)
.++.++...|++++|++.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 788888877777776655443
No 193
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.92 E-value=4.2e-05 Score=78.34 Aligned_cols=65 Identities=5% Similarity=-0.027 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
...|..+..+|.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|+..|++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999999999999999999999999998853
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.88 E-value=6.3e-05 Score=74.50 Aligned_cols=113 Identities=6% Similarity=-0.011 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGAC 537 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 537 (648)
...+..+...+.+.|++++|...|+++.+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666777778888888888888776520 100 0001111111 1222 356788889999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|++.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999874
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=8.7e-05 Score=75.85 Aligned_cols=123 Identities=12% Similarity=0.091 Sum_probs=92.3
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHR--ISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQA 532 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 532 (648)
+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567788888877777655311 111 3556778888888888888888877765 23344 556888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFL-----AQPDSPA---PYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
|...|...|++++|+.+++++++ ++|+.+. +...+..++...|++++|...+.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 4566554 45678888889999999999999998743
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=3.5e-05 Score=75.44 Aligned_cols=150 Identities=10% Similarity=0.012 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816 393 PFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS 470 (648)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 470 (648)
...+..+...+.+.|++++|...|.+... ++... +...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45577788888999999999999988653 22211 122333333332221 136777888889
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCChHHHH
Q 037816 471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGA-CSIHGDSEMGK 547 (648)
Q Consensus 471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~A~ 547 (648)
+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 2347788899999999999999999999988 56665 3344444444 23456778888
Q ss_pred HHHHHHHhcCCCCC
Q 037816 548 YAAEKLFLAQPDSP 561 (648)
Q Consensus 548 ~~~~~~~~~~p~~~ 561 (648)
..|++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 89999998888764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=7.4e-05 Score=56.59 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816 494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571 (648)
Q Consensus 494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 571 (648)
+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455666777777777777777777766 2233 4667777888888888888888888888888888888888888777
Q ss_pred HhcC
Q 037816 572 SCSG 575 (648)
Q Consensus 572 ~~~g 575 (648)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6554
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.81 E-value=9.4e-05 Score=59.15 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=62.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+|++.|++. ...| +...+..+..++...|++++|+..++++++..|.+..++..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555555 3444 46778888888888899999999999988888888888888888898999999999888888663
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.00032 Score=58.17 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 037816 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKY 548 (648)
Q Consensus 473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 548 (648)
+++++|..+|++..+. + .|.. . |...|...+.+++|.+.|++.-..-++..+..|...|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 3566666667666653 3 2222 2 566666666666677777666222456666777777776 678888888
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037816 549 AAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 549 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 592 (648)
.++++.+. .++.++..++.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88887765 456677788888877 7788888888888877664
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.63 E-value=0.00031 Score=53.31 Aligned_cols=69 Identities=14% Similarity=0.003 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 524 KPDVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 524 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888765555 79999999999999999999999999999999999999999999988654
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.63 E-value=3.4e-05 Score=64.43 Aligned_cols=84 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816 508 AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGD----------SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG 575 (648)
Q Consensus 508 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 575 (648)
.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555554 2233 34555555555555443 679999999999999999999999999999875
Q ss_pred -----------ChHHHHHHHHHHHhCC
Q 037816 576 -----------RWKERAKAIKRMKEMG 591 (648)
Q Consensus 576 -----------~~~~A~~~~~~m~~~~ 591 (648)
++++|++.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999998843
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00017 Score=57.01 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
++...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456788888999999999999999999999999999999999999999999999999999998753
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.51 E-value=0.0013 Score=68.98 Aligned_cols=149 Identities=9% Similarity=0.025 Sum_probs=122.9
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816 438 GNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGL----------VNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506 (648)
Q Consensus 438 ~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 506 (648)
...++|++.++++...+ | +...|+.--.++...|+ +++++..++.+.+. .+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34678899999999855 6 45566665555555666 89999999999884 3448888988888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc-------
Q 037816 507 RAG--LLIEARSFIERM-PVKP-DVLVWQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS------- 574 (648)
Q Consensus 507 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 574 (648)
+.| +++++++.++++ ...| +...|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999999 4444 6788988888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhC
Q 037816 575 -------GRWKERAKAIKRMKEM 590 (648)
Q Consensus 575 -------g~~~~A~~~~~~m~~~ 590 (648)
++++++++.+++....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 5679999999888763
No 204
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.46 E-value=0.00069 Score=55.88 Aligned_cols=65 Identities=9% Similarity=-0.050 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 525 PDVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQ-P-DSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
++..+...+..++.+.+ +.++++.+++.+.+.. | .+...++.++-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55666666666666665 4556666666666665 4 3455666666666677777777777666655
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.45 E-value=9e-05 Score=72.40 Aligned_cols=395 Identities=10% Similarity=0.067 Sum_probs=251.9
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816 88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD 167 (648)
Q Consensus 88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~ 167 (648)
.+.+|+.|..+..+.|.+.+|++.|=+ ..|+..|..+|.+..+.|.+++-+.++...++..-.|. .=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~---IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT---TTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cHHHHHHHHH
Confidence 456899999999999999999887744 45778899999999999999999999988777654443 3467888898
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC------------------------CCCcc
Q 037816 168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR------------------------VRNVI 223 (648)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 223 (648)
+.+++.+.+.+. -.|+..-...+.+-|...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888776544433 14666666777888888888888888887764 13678
Q ss_pred cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcC-CCchhHHHHHHHHH
Q 037816 224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL-QSDLCIESALMDMY 302 (648)
Q Consensus 224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 302 (648)
+|..+-.+|...+.+.-|.-.--.+.- .|| ....++.-|-..|.+++-+.+++... |+ .....+++.|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence 999999999999998877655444431 122 22345555777788888777776655 32 34566788888888
Q ss_pred HhcCCHHHHHHHHHhccC-----------CCcccHHHHHHHHHHcCCHHHHHHHH-------------HHHHHcCCCcCH
Q 037816 303 SKCGSVEDAWQIFEFAEE-----------LDGVSMTVILVGFAQNGFEEEAMQLF-------------VKMVKAGIEIDP 358 (648)
Q Consensus 303 ~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~~~~p~~ 358 (648)
++- ++++..+.++..-. .....|.-++-.|.+-.+++.|.... .+.... ..+.
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~ 350 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANV 350 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCS
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchH
Confidence 776 45555555544332 14456777777787777777665321 010000 1233
Q ss_pred HHHHH---------------HHHHHhccCChhHHHHHHHHHHHh----------CCCCchhHHHHHHHHHHhCCCHHHHH
Q 037816 359 NMVSA---------------VLGVFGVDTSLGLGKQIHSLIIKS----------DFTSNPFVNNGLINMYSKCGDLEDSI 413 (648)
Q Consensus 359 ~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (648)
..|-. |+.++...=+..++.+++...-.. .-..+..+-.++-+.|....+++.-+
T Consensus 351 EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR 430 (624)
T 3lvg_A 351 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 430 (624)
T ss_dssp HHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Confidence 33333 333333333333333333321100 01123344556666777777766555
Q ss_pred HHHhhcCC------------CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816 414 KVFSRMAP------------RNSVSWNS-MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME 480 (648)
Q Consensus 414 ~~~~~~~~------------~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 480 (648)
...+.... ....-|.. ....|.++++|.+++.+.++ ...|.-.|.....+|+.+-|.+
T Consensus 431 ~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaee 501 (624)
T 3lvg_A 431 TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEE 501 (624)
T ss_dssp HTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHH
T ss_pred HHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHH
Confidence 44443322 12222222 23445666777776654322 1223445666788899999999
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816 481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF 517 (648)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 517 (648)
+++-..+. -+...|...+-.|...=+++-++++
T Consensus 502 LL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 502 LLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 99988875 3566777788888888888888876
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.44 E-value=0.00041 Score=52.30 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|++.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5567788889999999999999999999999999999999999999999999999999999874
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.42 E-value=0.00011 Score=61.34 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=35.5
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCC
Q 037816 512 IEARSFIERM-PVKPD-VLVWQALLGACSIH-----------GDSEMGKYAAEKLFLAQPDSP 561 (648)
Q Consensus 512 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 561 (648)
++|+..|++. .+.|+ ...|..+..+|... |++++|++.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4566666555 44443 45566666666554 589999999999999999974
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.41 E-value=0.00022 Score=72.88 Aligned_cols=114 Identities=10% Similarity=-0.001 Sum_probs=87.4
Q ss_pred HhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccHH
Q 037816 504 MVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPYI 565 (648)
Q Consensus 504 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~~ 565 (648)
.+...|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ ..|+. ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988776 12233 56789999999999999999999999975 34444 45788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816 566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635 (648)
Q Consensus 566 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 635 (648)
.++.+|..+|++++|+.++++..+.-. ......||...++...+.+...+|.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876211 0123578999888877776665443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.37 E-value=0.00063 Score=54.16 Aligned_cols=80 Identities=15% Similarity=0.036 Sum_probs=51.5
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 478 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
|...|++..+. .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555441 2235566666667777777777777777665 3333 356677777777777888888887777777
Q ss_pred cCCC
Q 037816 556 AQPD 559 (648)
Q Consensus 556 ~~p~ 559 (648)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6654
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.00043 Score=69.67 Aligned_cols=115 Identities=10% Similarity=0.062 Sum_probs=84.8
Q ss_pred HHhhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccH
Q 037816 503 DMVGRAGLLIEARSFIERM------PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPY 564 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~ 564 (648)
..+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ ..|.. ...+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3445667777777777655 11222 45688888889999999999999998874 23443 3578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816 565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI 635 (648)
Q Consensus 565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 635 (648)
+.++.+|..+|++++|+.++++..+--. ..-...||...++...+.+...+|.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999866210 0123589999999988888888775
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.28 E-value=0.0036 Score=51.70 Aligned_cols=113 Identities=13% Similarity=-0.048 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHH
Q 037816 437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLI 512 (648)
Q Consensus 437 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 512 (648)
.+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356889999999999988 44444 667777778889999999999874 467778888888888 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 037816 513 EARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQP 558 (648)
Q Consensus 513 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 558 (648)
+|.+.|++.-..-++..+..|...|.. .++.++|+..++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988323577888889889988 8999999999999988754
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.26 E-value=0.029 Score=44.29 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=111.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816 434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513 (648)
Q Consensus 434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 513 (648)
+.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34568888999999888863 46677888887777778888888888888653322 34677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 514 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
....+-.++ .+...++..+.....+|.-++-.+++..++..++.++.....++.+|.+.|+..+|.+++++..+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777663 345667778888999999999999999988888888999999999999999999999999999999874
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.22 E-value=0.00081 Score=61.81 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=72.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-CccHHHHHHHHHhc-CChHH
Q 037816 511 LIEARSFIERM-PVKPD---VLVWQALLGACSIH-----GDSEMGKYAAEKLFLAQPDS-PAPYILMANIYSCS-GRWKE 579 (648)
Q Consensus 511 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 579 (648)
..+|...+++. .+.|+ ...|..+...|... |+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45666666666 56676 66788888888884 99999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 037816 580 RAKAIKRMKEMGVDKET 596 (648)
Q Consensus 580 A~~~~~~m~~~~~~~~~ 596 (648)
|.+.+++.+....+.+|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999998776433
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.19 E-value=0.00035 Score=53.88 Aligned_cols=79 Identities=15% Similarity=0.083 Sum_probs=56.8
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCCh
Q 037816 501 VVDMVGRAGLLIEARSFIERM-PVKP-DVL-VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW 577 (648)
Q Consensus 501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 577 (648)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|+..++++++.+|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345667778888888888776 3344 456 77778888888889999999999988888888766632 445
Q ss_pred HHHHHHHHHH
Q 037816 578 KERAKAIKRM 587 (648)
Q Consensus 578 ~~A~~~~~~m 587 (648)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 215
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.16 E-value=3.7e-05 Score=75.07 Aligned_cols=238 Identities=9% Similarity=0.022 Sum_probs=159.9
Q ss_pred CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 037816 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268 (648)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 268 (648)
..+.+|+.|..+..+.+++.+|.+-|=+. .|...|..+|....+.|.+++-+..+.-.++..-.|. .=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 34567888888988888888887766443 4666788999999999999999998887776543343 3457888999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------------------CCcc
Q 037816 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE------------------------LDGV 324 (648)
Q Consensus 269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~ 324 (648)
+.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9888776554442 35555556677778888888888877766542 3778
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816 325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS 404 (648)
Q Consensus 325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (648)
+|..+-.+|...+++.-|.-.--.++-+ | .....++..|-..|.+++...+++.-.... .....+++-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 8999999999988877665443333321 1 112234555667777777777776655322 456677777777777
Q ss_pred hCCCHHHHHHHHhhcCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 037816 405 KCGDLEDSIKVFSRMAP----R-------NSVSWNSMIAAFARHGNGFKAL 444 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 444 (648)
+- ++++..+.++..-. | ....|.-++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 34444444433221 1 4556777777777777777664
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.012 Score=56.46 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHhH
Q 037816 421 PRNSVSWNSMIAAFAR--HG---NGFKALELYEEMKLEGVEPT-DVTFLSLLHACSH---VG-----LVNKGMEFLKSMT 486 (648)
Q Consensus 421 ~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~g-----~~~~A~~~~~~~~ 486 (648)
+.+...|...+.+... .+ +..+|..+|++..+.. |+ ...+..+..++.. .+ ........++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466667666655432 22 3578888888888854 65 3445444444321 00 0111111111111
Q ss_pred HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
.....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 10112335555555555555556666666666665 334555555555555666666666666666666666654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.10 E-value=0.0011 Score=51.01 Aligned_cols=59 Identities=24% Similarity=0.376 Sum_probs=54.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCc-cHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPA-PYILMANIYSCSGRWKERAKAIKRMKEMG 591 (648)
Q Consensus 533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 591 (648)
....+...|++++|+..++++++..|.++. ++..++.+|...|++++|++.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788999999999999999999999999 99999999999999999999999998754
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.00071 Score=67.91 Aligned_cols=82 Identities=15% Similarity=0.064 Sum_probs=60.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccHHHHHH
Q 037816 508 AGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPYILMAN 569 (648)
Q Consensus 508 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~~~l~~ 569 (648)
.|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ..|+. ...++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666554 12233 45678888888889999999998888874 23443 356888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 037816 570 IYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 570 ~~~~~g~~~~A~~~~~~m~~ 589 (648)
+|..+|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998866
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.96 E-value=0.003 Score=48.68 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=35.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555666666666666655543 12344555555555666666666666655544
No 220
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.75 E-value=0.7 Score=48.33 Aligned_cols=113 Identities=9% Similarity=-0.027 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVT----FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA 514 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 514 (648)
+.+.|...+....+.. ..+... ...+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 6677777777776543 223322 222333334444344555555554332 23333333344444566888888
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816 515 RSFIERMPVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 515 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 555 (648)
...|+.|+..+ ...-.-=+.+++...|+.++|..+|+++..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888773322 222222344566677888888887777764
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.68 E-value=0.0054 Score=61.52 Aligned_cols=92 Identities=11% Similarity=-0.018 Sum_probs=58.6
Q ss_pred cCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 037816 472 VGLVNKGMEFLKSMTEVH--RISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLG 535 (648)
Q Consensus 472 ~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 535 (648)
.|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666666554421 1111 2355666777777777777777766655 23344 455888888
Q ss_pred HHHHcCChHHHHHHHHHHHh-----cCCCCCcc
Q 037816 536 ACSIHGDSEMGKYAAEKLFL-----AQPDSPAP 563 (648)
Q Consensus 536 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 563 (648)
.|...|++++|+.+++++++ .+|+.|.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 89999999999999888875 45665533
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.62 E-value=0.01 Score=46.91 Aligned_cols=65 Identities=8% Similarity=-0.071 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 525 PDVLVWQALLGACSIHGDSEM---GKYAAEKLFLAQ-P-DSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 525 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
|+..+--.+.+++.+..+... ++.+++.+.+.. | ........++-++.+.|+|++|+++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333343344444444433222 444444444433 2 2233444444555555555555555555444
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.1 Score=57.59 Aligned_cols=46 Identities=13% Similarity=-0.007 Sum_probs=25.4
Q ss_pred HHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 037816 302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM 349 (648)
Q Consensus 302 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 349 (648)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555665555554442 3345555666666666666666666554
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.013 Score=58.84 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=67.5
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037816 466 LHACSHVGLVNKGMEFLKSMTEVH--RISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLV 529 (648)
Q Consensus 466 l~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 529 (648)
+..+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334455677777777777776421 1112 2456777777788888888888777765 23344 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCccH
Q 037816 530 WQALLGACSIHGDSEMGKYAAEKLFL-----AQPDSPAPY 564 (648)
Q Consensus 530 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 564 (648)
++.|...|...|++++|+.+++++++ .+|+.|.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88888999999999999999999875 456665443
No 225
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.54 E-value=0.018 Score=55.31 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHH--hcc---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhh---cC-----C---HHHHHHH
Q 037816 455 VEPTDVTFLSLLHAC--SHV---GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGR---AG-----L---LIEARSF 517 (648)
Q Consensus 455 ~~p~~~~~~~ll~~~--~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~ 517 (648)
.+.+...|...+++. ... .+..+|..+|+++.+. .|+ ...+..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 345667777777664 332 3467899999999874 564 4455544444421 11 1 1122222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 518 IERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 518 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
...+ ....++.+|..+...+...|++++|+..+++++.++|. ...|..++.++.-.|++++|.+.+++......
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2223 23457888888888888889999999999999999964 56778999999999999999999999988654
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.48 E-value=0.064 Score=59.23 Aligned_cols=166 Identities=14% Similarity=0.087 Sum_probs=101.0
Q ss_pred HHHhcCCchHHHH-HHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 037816 129 GFLRNGEFDMGFG-FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS 207 (648)
Q Consensus 129 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 207 (648)
.....+++++|.+ ++..+ |+.. ....++..+...|..+.|..+.+ +.. .-.......|++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~-~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKD-SLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHH-HHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchH-HHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 3345677777765 44221 1011 33556666666677666665432 111 113345678999
Q ss_pred hHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 037816 208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA 287 (648)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 287 (648)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999988775 446899999999999999999999998854 4455555555666666655555544443
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 037816 288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK 348 (648)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 348 (648)
. ++.-..+|.+.|++++|.++ |.+.+++++|..+-+.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~------------------~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDL------------------LIKSQRFSEAAFLGST 774 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHH------------------HHHTTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHH------------------HHHcCChHHHHHHHHH
Confidence 1 23333445566666666655 4455666666665443
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.38 E-value=0.087 Score=42.40 Aligned_cols=92 Identities=5% Similarity=-0.013 Sum_probs=68.3
Q ss_pred CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCC-CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037816 523 VKPDVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598 (648)
Q Consensus 523 ~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 598 (648)
..|+..+--.+.+++.+.. +..+++.+++.+.+..|. .......++-++.+.|+|++|+++.+.+++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--------- 105 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--------- 105 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---------
Confidence 3567777777777777775 455788888888887774 345777888889999999999999998877
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 037816 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~ 640 (648)
.+|.+.+....-..+.++|.+.|+.
T Consensus 106 -----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 -----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3466666666666667777777764
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.37 E-value=0.018 Score=44.56 Aligned_cols=42 Identities=21% Similarity=0.161 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
....+..|..++.+.|+++.|+.+++++++..|.++.+...+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 466788888999999999999999999999999987665554
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.28 E-value=0.025 Score=42.59 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=51.0
Q ss_pred CCChhHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 492 SPRAEHYACVVDMVGRAGL---LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
+.++..+..+..++...++ .++|..++++. ...|+ +.....+...+.+.|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3466677777777654444 67888888777 44554 6667777788888899999999999998888883
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.025 Score=46.62 Aligned_cols=87 Identities=11% Similarity=-0.059 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHHH
Q 037816 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG---LLIEARSFIERM-PVK-P--DVLVWQALLGACSIHGDSEMGK 547 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 547 (648)
...+.+-|.+..+. + .++..+...+..++++.+ +.++++.++++. ... | +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 33444445544442 2 245555556666666665 444666666655 222 4 2455666777889999999999
Q ss_pred HHHHHHHhcCCCCCcc
Q 037816 548 YAAEKLFLAQPDSPAP 563 (648)
Q Consensus 548 ~~~~~~~~~~p~~~~~ 563 (648)
++++.+++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999988543
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.69 E-value=0.042 Score=42.45 Aligned_cols=65 Identities=11% Similarity=-0.039 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ-------PDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
+..-...+...+.+.|+++.|+..++++++.. +..+.++..++.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678889999999999999999998643 234567999999999999999999999999773
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.68 Score=39.14 Aligned_cols=103 Identities=10% Similarity=0.043 Sum_probs=64.1
Q ss_pred HHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHH
Q 037816 199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278 (648)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 278 (648)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455677888887777665 3455788888888888888888888877754 4444445555666666555
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318 (648)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 318 (648)
+-+.....|- ++.-...+...|+++++.++|.+.
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5444444331 233444455566666666665543
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.29 E-value=0.092 Score=41.66 Aligned_cols=68 Identities=6% Similarity=-0.019 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 522 PVKPDVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
+-.|+..+--.+.+++.+..+ ..+++.+++.+.+..|. ....+..++-++.+.|++++|+++.+.+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 335666666666677776653 45677788888777763 356677788888888888888888888766
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.94 E-value=0.22 Score=39.31 Aligned_cols=90 Identities=10% Similarity=-0.112 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHH
Q 037816 474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE---ARSFIERM-PVK-P--DVLVWQALLGACSIHGDSEMG 546 (648)
Q Consensus 474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 546 (648)
....+.+-|.+.... +. ++..+--.+..++++...... ++.+++.. ... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344455555555443 32 666666666677777665554 66777666 222 3 233445566788999999999
Q ss_pred HHHHHHHHhcCCCCCccHH
Q 037816 547 KYAAEKLFLAQPDSPAPYI 565 (648)
Q Consensus 547 ~~~~~~~~~~~p~~~~~~~ 565 (648)
.+.++.+++..|.+..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999999864443
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.89 E-value=5.5 Score=43.45 Aligned_cols=248 Identities=9% Similarity=-0.032 Sum_probs=129.8
Q ss_pred HHHHhcCCHHHHHHHHHhccCC----Ccc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcCHHHHHHHHH
Q 037816 300 DMYSKCGSVEDAWQIFEFAEEL----DGV--SMTVILVGFAQNGFEEEAMQLFVKMVKAGI-------EIDPNMVSAVLG 366 (648)
Q Consensus 300 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll~ 366 (648)
-+....|+.+++..+++..... +.. .-..+.-+.+..|..+++..++.......- .+....-..+--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3456778888888888776542 111 122334456666666678887777655321 011111222222
Q ss_pred HH--hccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CC--hhHHHHHHHHHHHcCC
Q 037816 367 VF--GVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAP-RN--SVSWNSMIAAFARHGN 439 (648)
Q Consensus 367 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~l~~~~~~~~~ 439 (648)
++ ...++. ++...+..+....- +.. ..--+|...+.-.|+-+....++..+.+ .+ +.-.-.+.-++...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 23 233333 44444444443221 111 1122334445567777777777765432 22 2223333444557789
Q ss_pred hHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816 440 GFKALELYEEMKLEGVEPTDV-TFL---SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR 515 (648)
Q Consensus 440 ~~~A~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 515 (648)
.+.+..+++.+... .+.. -|. .+.-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 88888888888763 2332 232 3345678899988777788888763 2333333333444445567766666
Q ss_pred HHHHhCCCCCCHHH--HHHHHHHHHHcCCh-HHHHHHHHHHH
Q 037816 516 SFIERMPVKPDVLV--WQALLGACSIHGDS-EMGKYAAEKLF 554 (648)
Q Consensus 516 ~~~~~~~~~p~~~~--~~~l~~~~~~~g~~-~~A~~~~~~~~ 554 (648)
++++.+....|+.+ -..+.-+....|.. .+++..+..+.
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77665522223333 23333333334432 55666666664
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=1.6 Score=36.87 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=20.9
Q ss_pred hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450 (648)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 450 (648)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444444444444433 23444555555555555555555554443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.62 E-value=0.15 Score=41.31 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816 541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD 593 (648)
Q Consensus 541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 593 (648)
+|.++|.++|+.++.....=+.++...+..-.++|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665543333444555555555666666666666666655543
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.55 E-value=0.065 Score=49.31 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHc-CC
Q 037816 475 VNKGMEFLKSMTEVHRISPR---AEHYACVVDMVGRA-----GLLIEARSFIERM-PVKPD--VLVWQALLGACSIH-GD 542 (648)
Q Consensus 475 ~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-g~ 542 (648)
...|...++++.+ +.|+ ...|..|...|... |+.++|.+.|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3445555555544 3443 44566666666663 6777777777766 45552 55566666666663 77
Q ss_pred hHHHHHHHHHHHhcCCC
Q 037816 543 SEMGKYAAEKLFLAQPD 559 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~ 559 (648)
.+.|.+.+++++...|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777776655
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.62 Score=49.71 Aligned_cols=54 Identities=17% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
..|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999998873
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.50 E-value=3.7 Score=41.10 Aligned_cols=114 Identities=7% Similarity=-0.042 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHcC----CCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCCChhHHHHHHH----HhHhc
Q 037816 134 GEFDMGFGFFKRSLELG----FYQLDQASFTIILSACDRSELSLVSKMIHCLVYL-CGYEEEVTVGNALIT----SYFKC 204 (648)
Q Consensus 134 g~~~~A~~~~~~m~~~~----~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~ 204 (648)
|++++|++.+-.+.+.. -.+........++..|...++++........+.+ .|..+.. ...++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 56777877776655431 1122233677788888888888887776665543 3322221 222332 22222
Q ss_pred CChh--HHHHHhcccC---CCCc-------ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816 205 GSSS--SGRKVFGEMR---VRNV-------ITWTAVISGLVQNQLYEEGLKLFVKMH 249 (648)
Q Consensus 205 g~~~--~A~~~~~~~~---~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~ 249 (648)
...+ .-..+.+... ..-. .....|...+...|++.+|.+++..+.
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~ 164 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQ 164 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2222 2222333222 1111 112455666777777777777777774
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.82 E-value=6.2 Score=36.96 Aligned_cols=167 Identities=8% Similarity=0.052 Sum_probs=97.0
Q ss_pred HHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH----HHHHHhCCCCCChhhHHHHHHHhh
Q 037816 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL----FVKMHLGLINPNSLTYLSSVMACS 268 (648)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~ 268 (648)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456667778888888888877532 23445667777666554 455566788888877777777665
Q ss_pred ccCChH-HHHHHHHHHH----HhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHc---CC
Q 037816 269 GLQALC-EGRQIHGILW----KLAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN---GF 338 (648)
Q Consensus 269 ~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~ 338 (648)
....-+ .-.++.+.+. +.|- .-++.....+...|.+.+++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1233333333 3332 236677888899999999999998877533222344444444333332 33
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII 385 (648)
Q Consensus 339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 385 (648)
..++-- ..-.. +--+...++...|..+++...
T Consensus 184 ~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 222211 11112 223445678888888777654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.79 E-value=0.48 Score=38.48 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HhhhcCCHHHHHHHHHhC---
Q 037816 458 TDVTFLSLLHACSHVGLV------NKGMEFLKSMTEVHRISPRAE-HYACVVD------MVGRAGLLIEARSFIERM--- 521 (648)
Q Consensus 458 ~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~--- 521 (648)
|..+|-..+....+.|+. ++.+++|+++.. .++|+.. .|...|. .+...++.++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334444444444444444 555566666555 3555321 1111111 122336777777777766
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567 (648)
Q Consensus 522 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 567 (648)
.-+- ...|......-.++|+...|.+++.+++.+.|.+...+...
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 1111 56666666666788999999999999999888765444433
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.60 E-value=3.2 Score=32.97 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=92.6
Q ss_pred HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 037816 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA 311 (648)
Q Consensus 232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 311 (648)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++. -|--.|.. .+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCcH----------hhhcHHHH
Confidence 44568888888888887652 4556677777666555555544444433 33333332 23344444
Q ss_pred HHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 037816 312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT 390 (648)
Q Consensus 312 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 390 (648)
...+-.+.. +....+..+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443333322 334456667788889999998888888644 34788888899999999999999999999888888754
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.50 E-value=14 Score=40.27 Aligned_cols=469 Identities=11% Similarity=0.047 Sum_probs=222.1
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHhhhcCC-CCCcCcCCCC-----ChHHHHHHHHHHHhcCCCh--------hHHHHhh
Q 037816 47 ISRLLSISAKEGHFHLGPSLHASFIKTFEP-FDNQNVYNVP-----NATVIWNSLLSFYLKCDQM--------RNAVKLF 112 (648)
Q Consensus 47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~ 112 (648)
...++.-|...+...+|..+.-+..+. - +++-....+. .-..++..++.++-..-.. +-+.++|
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~erL--D~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEGYRL--DIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCH--HHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhH--HHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 577888899999998888776655432 1 0000000000 1124444455544333222 2356666
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHh-------
Q 037816 113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC------- 185 (648)
Q Consensus 113 ~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 185 (648)
.++..| -|-.+++++.+.++.+.+.++|+.+... .+....|...... .+.+.-.-...+.+.+...
T Consensus 226 ~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL-~~~~~Q~fL~~v~~~l~~~e~~~kL~ 298 (963)
T 4ady_A 226 MNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDL-VSSASQQLLEILVTELTAQGYDPALL 298 (963)
T ss_dssp HHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHH-hcccchHHHHHHHHhccccchhHHHH
Confidence 666433 4778888899999999999999998742 2333233332222 2222111111121111110
Q ss_pred CC---CCChhHHHHHHHHhHhcCC--hhHHHHHhcccCCCCcc--cHHHHHHHHHHCCCchHH-HHHH-HHHHhCCCCCC
Q 037816 186 GY---EEEVTVGNALITSYFKCGS--SSSGRKVFGEMRVRNVI--TWTAVISGLVQNQLYEEG-LKLF-VKMHLGLINPN 256 (648)
Q Consensus 186 ~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a-~~~~-~~m~~~~~~p~ 256 (648)
.+ ......|..++. +.+. ...-..+=..+..++.. +-..+.+++...|--... +... ..+.+. -+
T Consensus 299 ~ILsg~~~~~Lyl~FL~---~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~ 372 (963)
T 4ady_A 299 NILSGLPTCDYYNTFLL---NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA---QN 372 (963)
T ss_dssp HHTTSHHHHHHHHHHHH---HHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CT
T ss_pred HHhCCCChHHHHHHHHH---hccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc---ch
Confidence 00 111222222222 2221 11111110111112211 122455667766644322 2211 112111 11
Q ss_pred hhhHHH-HHHHhhccCChHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CC--------c-
Q 037816 257 SLTYLS-SVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-LD--------G- 323 (648)
Q Consensus 257 ~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--------~- 323 (648)
-.-+.+ .--+....|+.+++..++...+..+ -.+....-..+.-+...+|..+++.+++..... .+ .
T Consensus 373 ~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHH
Confidence 111211 2224456677777777666544321 122233444555556666666667776655432 22 1
Q ss_pred -ccHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 324 -VSMTVILVGFAQNGF-EEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 324 -~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
..-.++.-+++..|. -+++.+.+..+....- +...... .+-..+...|+.+....++..+.+.. +..+...+
T Consensus 453 ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~a 528 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGL 528 (963)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHH
Confidence 111223333333332 2456666666655321 1111122 22333557777777788877776532 22333333
Q ss_pred HHH--HHhCCCHHHHHHHHhhcCC-CC-hhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816 400 INM--YSKCGDLEDSIKVFSRMAP-RN-SVSWN---SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472 (648)
Q Consensus 400 i~~--~~~~g~~~~A~~~~~~~~~-~~-~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 472 (648)
..+ +.-.|+.+.+..+++.+.. .+ ..-|. ++.-+|+..|+.....++++.+.+.. ..+......+.-++...
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence 333 3366777777777666542 23 22333 23446677888777777888887642 22222223333344455
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037816 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL-IEARSFIERMPVKPDVLVWQALLGAC 537 (648)
Q Consensus 473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~ 537 (648)
|+.+.+.++++.+.+ ...|....-..+.-+....|.. .+|.+++..+...+|..+-...+.++
T Consensus 608 g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 608 RDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp SSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 666666777766655 2345554444444444444443 67777888774455555544444343
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.77 E-value=0.38 Score=47.42 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCc
Q 037816 529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKETG 597 (648)
Q Consensus 529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 597 (648)
....++.++...|++++++..++.+...+|-+...+..++.+|.+.|+..+|++.|++..+ .|+.|.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3455667788899999999999999999999999999999999999999999999998754 58888764
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.65 E-value=1.8 Score=35.88 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=59.6
Q ss_pred cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC--
Q 037816 453 EGVEPTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-------EHYACVVDMVGRAGLLIEARSFIERM-- 521 (648)
Q Consensus 453 ~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 521 (648)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34455333 33344555666777777776666654432233331 24455666666666666666666654
Q ss_pred --CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 522 --PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 522 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
+.-+ +..+...+. ....... -. ..+.+...-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC--------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1101 110000000 0000000 00 01223356778999999999999999998865
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.51 E-value=12 Score=35.37 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHH
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY----EEMKLEGVEPTDVTFLSLLHAC 469 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~ 469 (648)
.+|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778889999999988743 234456677776666555 4455678888888888888777
Q ss_pred hccCc--HHHHHHHHHHhHH---hcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 037816 470 SHVGL--VNKGMEFLKSMTE---VHRISP--RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542 (648)
Q Consensus 470 ~~~g~--~~~A~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 542 (648)
..... .+. ..+++++.+ +.|-.| ++.....+...|.+.|++.+|...|= .+..+.+..+..++..+...+.
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 55442 111 222222221 113223 78888899999999999999998884 3444444666556555544433
Q ss_pred hHHHHHHHHHHHhcCCCCCccHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 037816 543 SEMGKYAAEKLFLAQPDSPAPYI-LMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 543 ~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
|.+...|. ..+--|.-.|+...|...++...+
T Consensus 183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 233346677899999888777664
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.84 E-value=13 Score=34.81 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHHHHHHHHHHHhc
Q 037816 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL----FVKMVKAGIEIDPNMVSAVLGVFGV 370 (648)
Q Consensus 295 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~ 370 (648)
|.++..-|.+.+++++|.+++..- ...+.+.|++..|.++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345556688888999988886542 3346677887766664 4555567899999888888888765
Q ss_pred cCChh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CCh
Q 037816 371 DTSLG-LGKQIHSLII----KSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH---GNG 440 (648)
Q Consensus 371 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 440 (648)
...-+ .-..+.+.++ +.| -.-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 43211 1234444444 232 2247788889999999999999999877532222344444443333222 222
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
.++- ...-..+ -.|...|+...|..+++...+.
T Consensus 185 ~e~d--------------lf~~RaV-L~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVA--------------EFFSRLV-FNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred chHH--------------HHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence 2211 1111122 2345667888898888877653
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.46 E-value=7.9 Score=38.70 Aligned_cols=182 Identities=11% Similarity=0.134 Sum_probs=116.3
Q ss_pred CCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccC
Q 037816 407 GDLEDSIKVFSRMAP---------RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC----SHVG 473 (648)
Q Consensus 407 g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g 473 (648)
|++++|.+.+-.+.+ ........++..|...|+++...+.+.-+.+..-.. ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 678888887754431 234567778899999999999988887766532222 22233344333 2222
Q ss_pred cHH--HHHHHHHHhHHhc--CCCC---ChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHH
Q 037816 474 LVN--KGMEFLKSMTEVH--RISP---RAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPD---VLVWQALLGACS 538 (648)
Q Consensus 474 ~~~--~A~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~ 538 (648)
..+ .-..+.+...... .+-. .......|...|...|++.+|.+++..+ +..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 2222222221100 0111 2234467889999999999999999987 22222 345666678899
Q ss_pred HcCChHHHHHHHHHHHh---cCCCCC----ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 539 IHGDSEMGKYAAEKLFL---AQPDSP----APYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 539 ~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
..+|+.+|..+++++.. ..+.++ ..+...+..+...++|.+|-+.|..+.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999742 223222 4667888888899999999888877754
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.23 E-value=4.5 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 510 LLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 510 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
+.-+..+-++.+ ..-|++....+.+++|.+.+|+..|+++++.+.....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444444443 678999999999999999999999999999998766555566776654
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.05 E-value=2.4 Score=31.53 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
+.-++.+-++.+....+-|++......+++|.+.+++..|.++++.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 444666777777788899999999999999999999999999999998853 3445667776643
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.31 E-value=8.5 Score=43.96 Aligned_cols=64 Identities=5% Similarity=-0.144 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-----PYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
..-|..++..+.+.+.++.++++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+.
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 345667777788888888888888888765543322 5667778888888888888888777554
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.12 E-value=2 Score=34.02 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CChhHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 493 PRAEHYACVVDMVGRAGLL---IEARSFIERM-PVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 493 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
|+..+--.+..++++..+. .+++.++++. ...| ....+-.|.-++.+.|++++|.++.+.+++..|.|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3444444444555554432 3455555544 2223 2444555666788888888888888888888888753
No 254
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.91 E-value=33 Score=35.98 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=14.3
Q ss_pred hhcCCHHHHHHHHHhCCCCC
Q 037816 506 GRAGLLIEARSFIERMPVKP 525 (648)
Q Consensus 506 ~~~g~~~~A~~~~~~~~~~p 525 (648)
...|+++.|++.+++.++-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 56777777777777775555
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.02 E-value=3.5 Score=33.17 Aligned_cols=71 Identities=10% Similarity=0.003 Sum_probs=46.6
Q ss_pred CCChhHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 492 SPRAEHYACVVDMVGRAGLL---IEARSFIERM-PVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 492 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.|+..+--.+..++++..+. .+++.++++. ...| .....-.|.-++.+.|++++|.++.+.+++..|.|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 34555555555566555543 3455555555 2233 2344455666899999999999999999999999853
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.80 E-value=12 Score=42.82 Aligned_cols=163 Identities=9% Similarity=0.011 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375 (648)
Q Consensus 296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 375 (648)
..++..+.+.+..+-+.++...... ++..--.+..++...|++++|.+.|++... |+..+.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3455666677777777766555443 443344566778888999999998876521 221110000 0000
Q ss_pred HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhc----CCCC----hhHHHHHHHHHHHcCChHHHHH
Q 037816 376 LGKQIHSLIIKSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRM----APRN----SVSWNSMIAAFARHGNGFKALE 445 (648)
Q Consensus 376 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~ 445 (648)
. +..+.... ...-..-|.-++..+.+.+.++.+.++-... .+.+ ...|..+.+++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 01111110 1112234555666666666666665554322 1222 1257778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVN 476 (648)
Q Consensus 446 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 476 (648)
.+-.+..... -...+..|+..+|..|..+
T Consensus 960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred HHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 8877766432 3455666777666666544
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.62 E-value=9.2 Score=28.37 Aligned_cols=86 Identities=9% Similarity=-0.050 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
.-++|..|-+.+...+. ...+-.+-+..+...|++++|..+.+...-||..+|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666655543 33333444556677888999988888888888888876654 366777777777777766
Q ss_pred cCCCcCHHHHH
Q 037816 352 AGIEIDPNMVS 362 (648)
Q Consensus 352 ~~~~p~~~~~~ 362 (648)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.46 E-value=8.6 Score=28.48 Aligned_cols=87 Identities=10% Similarity=-0.062 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 351 (648)
.-++|..|-+.+...+. ...+-.+-+..+...|++++|..+.+...-||..+|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45566666666655543 33333444556677888999988888888888888876654 477777888888877777
Q ss_pred cCCCcCHHHHHH
Q 037816 352 AGIEIDPNMVSA 363 (648)
Q Consensus 352 ~~~~p~~~~~~~ 363 (648)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 455544443
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.92 E-value=6.1 Score=38.71 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh----cCCCCChhH
Q 037816 428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV----HRISPRAEH 497 (648)
Q Consensus 428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 497 (648)
..++..+...|++++|+..+..+.... +-+...+..+|.++...|+..+|++.|+...+. .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 335556667777777777777776643 346677777777777777777777777776442 355665544
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.60 E-value=31 Score=33.56 Aligned_cols=162 Identities=10% Similarity=-0.020 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHH-
Q 037816 394 FVNNGLINMYSKCGDLEDSIKVFSRMAP--------RNSVSWNSMIAAFAR-HGNGFKALELYEEMKLEGVEPTDVTFL- 463 (648)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~- 463 (648)
.....|...|.+.|+.++..+++....+ ........++..+.. .+..+.-.++..+..+-.-.-...-+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHHHH
Q 037816 464 ----SLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVLVW 530 (648)
Q Consensus 464 ----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~ 530 (648)
.++..|...|++.+|..++.++.+...-..+ ..++..-++.|...|++.++...+... .+.|++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Q ss_pred HHHHHH----HH-HcCChHHHHHHHHHHHh
Q 037816 531 QALLGA----CS-IHGDSEMGKYAAEKLFL 555 (648)
Q Consensus 531 ~~l~~~----~~-~~g~~~~A~~~~~~~~~ 555 (648)
..+-.+ +. ..+++..|-..|-++.+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHh
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.29 E-value=28 Score=32.82 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCcCHHHHHHHHHHHhcc
Q 037816 296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF----VKMVKAGIEIDPNMVSAVLGVFGVD 371 (648)
Q Consensus 296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~ 371 (648)
.++..-|.+.+++++|.+++..- ...+.+.|+...+.++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 45556688889999988876432 33466777776665554 5556678899998888888888766
Q ss_pred CChh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 037816 372 TSLG-LGKQIHSLII----KSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL 444 (648)
Q Consensus 372 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 444 (648)
..-+ .-..+.+.++ +.| -.-++.....+...|.+.+++.+|+.-|-.-..+....|..++.-+...+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e-- 185 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT-- 185 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence 5422 1133344443 233 345677888899999999999999988853222233455444433333222111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816 445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487 (648)
Q Consensus 445 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 487 (648)
++...-..++ .|...++...|..+++...+
T Consensus 186 ------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 ------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222233 35556788888887776654
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.01 E-value=10 Score=29.99 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=41.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 520 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
.+.+-|++....+.+++|.+.+|+..|+++++.+.....+...+|..+++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34678999999999999999999999999999998776555667776654
No 263
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=83.60 E-value=20 Score=30.71 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCC
Q 037816 87 NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135 (648)
Q Consensus 87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~ 135 (648)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444444444444443434444444444444444444445544444
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.79 E-value=7 Score=32.41 Aligned_cols=26 Identities=4% Similarity=-0.130 Sum_probs=14.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMT 486 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~ 486 (648)
++..+.+++...+++.+|...|++..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444555555666666666665543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.76 E-value=27 Score=31.65 Aligned_cols=120 Identities=14% Similarity=0.037 Sum_probs=68.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHhhhc
Q 037816 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE----HYACVVDMVGRA 508 (648)
Q Consensus 433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 508 (648)
.+.+.|+.++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. +|..+|.+=.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHH--
Confidence 4456777888887777777654 336666666777788888888888777777653 34332 3333332211
Q ss_pred CCHHHHHHHHHhC---C-CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCCCc
Q 037816 509 GLLIEARSFIERM---P-VKPDVLVWQALLGAC--SIHGDSEMGKYAAEKLFLAQPDSPA 562 (648)
Q Consensus 509 g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~ 562 (648)
.. .++|.-- + +.....-...++.+. ...|+.++|.++-+++.+.-|..+.
T Consensus 80 --~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 --AR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 00 0122111 0 111222334444443 3458888888888888777766554
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.74 E-value=49 Score=34.48 Aligned_cols=338 Identities=8% Similarity=-0.076 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA 165 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~ 165 (648)
|.....-+.-+..+.+.+++...+.++.. ...+...--....+....|+..+|......+-..|... .. .+..++..
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~-~c~~l~~~ 145 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN-ACDKLFSV 145 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH-HHHHHHHH
Confidence 44556667778888899999999998887 42344333345677788899888888888888777322 22 56666666
Q ss_pred hhccCChHHHH--HHHHHHHHhC-----------CCCChh-HHHHHHHHhHhcCChhHHHHHhcccCCCCcc---cHHHH
Q 037816 166 CDRSELSLVSK--MIHCLVYLCG-----------YEEEVT-VGNALITSYFKCGSSSSGRKVFGEMRVRNVI---TWTAV 228 (648)
Q Consensus 166 ~~~~~~~~~a~--~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l 228 (648)
+...|.+.... .=.+.+...| ++++.. ....++..+ .+...+....... .++.. .+...
T Consensus 146 ~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVA 221 (618)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHH
Confidence 66554332221 1111111111 111111 011111111 1112222222111 11111 11112
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCChhhH----HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY----LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK 304 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 304 (648)
+.-+.+ .+++.|...|....... ..+.... ..+.......+...++...+....... .+.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHH
Confidence 233333 37899999998886433 2233222 223333344453555555555543332 333334444555667
Q ss_pred cCCHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816 305 CGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH 381 (648)
Q Consensus 305 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 381 (648)
.|+++.|...|+.|.... ....--+..++...|+.++|..+|+.+... .+ .|..+.. .+.|..-..
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~~---- 366 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYEL---- 366 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCCC----
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCCC----
Confidence 899999999999998742 222333556778899999999999998642 22 2333321 122211000
Q ss_pred HHHHHhCCCCc-h-----hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816 382 SLIIKSDFTSN-P-----FVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYE 448 (648)
Q Consensus 382 ~~~~~~~~~~~-~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 448 (648)
.....++. . ......+..+...|....|...+..+.+ .+......+.......|.++.++....
T Consensus 367 ---~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 367 ---KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp ---CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 00000010 0 0111234556778888888887776543 333333344444456677777665543
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.49 E-value=5.5 Score=31.49 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816 440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM 504 (648)
Q Consensus 440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 504 (648)
.-+..+-++.+...++-|++......+++|.+.+++..|.++|+-++.+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3456666777777889999999999999999999999999999999885 44456677777643
No 268
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.60 E-value=7.6 Score=41.48 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHhhcCCCCh--hHH--HHHHHHHHHcC-ChHHHHHHHHHHHHc------CCCC-CHHH
Q 037816 395 VNNGLINMYSKCGD-LEDSIKVFSRMAPRNS--VSW--NSMIAAFARHG-NGFKALELYEEMKLE------GVEP-TDVT 461 (648)
Q Consensus 395 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~~-~~~~A~~~~~~m~~~------~~~p-~~~~ 461 (648)
....++..+...++ .+.|..+|+++...++ ..+ ..++..+...+ +--+|.+++.+..+. ...+ +...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 4778888887764322 222 22222222222 233566666665431 1222 1110
Q ss_pred -----H-HHHH----HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 037816 462 -----F-LSLL----HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV 523 (648)
Q Consensus 462 -----~-~~ll----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 523 (648)
+ ..|+ .-|...|+++.|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.++.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 0 1122 3355678888888888888762 334678888888888888888888888888853
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=78.96 E-value=31 Score=29.79 Aligned_cols=48 Identities=10% Similarity=0.037 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCC
Q 037816 88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135 (648)
Q Consensus 88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~ 135 (648)
+..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 344444444555555554444444444444454444445555555544
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.84 E-value=19 Score=30.89 Aligned_cols=92 Identities=7% Similarity=-0.003 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037816 523 VKPDVLVWQALLGACSI--HGDSEMGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598 (648)
Q Consensus 523 ~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 598 (648)
.+.|+.....-+...-. .++...+..+|.-+... +-.-+..|...+..+...|++++|.++|+.=.+.+.+|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~--- 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY--- 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH---
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH---
Confidence 34555544333332222 44466777777777643 345566777888888888888888888888777665442
Q ss_pred eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 037816 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639 (648)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 639 (648)
..+...-.++..+|...++
T Consensus 150 ----------------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 150 ----------------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTC
T ss_pred ----------------------HHHHHHHHHHHHHHHhcCC
Confidence 3444455567777777776
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.19 E-value=4.7 Score=36.54 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=38.5
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816 503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS 560 (648)
Q Consensus 503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 560 (648)
..+.+.|++++|++....- +-.| |...-..|+.-+|-.|++++|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3455677777777766544 3344 45555566677777777777777777777777764
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.13 E-value=17 Score=35.99 Aligned_cols=61 Identities=7% Similarity=0.027 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
+...+...+.+.|+++.|.+.+.++.... +...-...+..+++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555556666666666666655421 11123344555555555555555555555554
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.58 E-value=30 Score=25.67 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=63.2
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450 (648)
Q Consensus 371 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 450 (648)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777666553 22232233456778999999999999999999999977744 4778888888888888
Q ss_pred HHcCCCCCHHHHHH
Q 037816 451 KLEGVEPTDVTFLS 464 (648)
Q Consensus 451 ~~~~~~p~~~~~~~ 464 (648)
..+| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8877 555555543
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.42 E-value=32 Score=25.56 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=62.0
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816 371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450 (648)
Q Consensus 371 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 450 (648)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777777666553 22222233456778999999999999999999999977754 4678888888888788
Q ss_pred HHcCCCCCHHHHH
Q 037816 451 KLEGVEPTDVTFL 463 (648)
Q Consensus 451 ~~~~~~p~~~~~~ 463 (648)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 8776 55555544
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.21 E-value=56 Score=27.82 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 037816 189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS 268 (648)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 268 (648)
++..+....+..+.+.|..+....+.+.+..++...-...+.++...|..+.. ..+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHH
Confidence 44444444445555555444444444444445554444555555555554332 22222222 144444444444444
Q ss_pred ccCC
Q 037816 269 GLQA 272 (648)
Q Consensus 269 ~~~~ 272 (648)
..++
T Consensus 102 ~~~~ 105 (201)
T 3ltj_A 102 QIGD 105 (201)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4443
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.68 E-value=35 Score=27.84 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=48.9
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816 513 EARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 513 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 589 (648)
++.+.|..- ..+.|+.-...-+.-.-...+ +..+|+-+... +-.-+..|...+..+...|++++|.++++.=.+
T Consensus 53 rc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 53 HLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445444 344565544433332222223 66777777653 344566777888888888888888888888777
Q ss_pred CCCCCC
Q 037816 590 MGVDKE 595 (648)
Q Consensus 590 ~~~~~~ 595 (648)
.+.+|-
T Consensus 130 ~~A~P~ 135 (152)
T 4a1g_A 130 NQAEPR 135 (152)
T ss_dssp TTCBSH
T ss_pred cCCccH
Confidence 766553
No 277
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.87 E-value=50 Score=32.65 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHH--H
Q 037816 395 VNNGLINMYSKCGDLEDSIKVFSRMAP------RNSVSWNSMIAAFARHGNGFKALELYEEMKLE---GVEPTDVTF--L 463 (648)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~--~ 463 (648)
+...+...|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+.+.... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455677777788888888887777652 12445666777777777888877777776532 222222211 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHh
Q 037816 464 SLLHACSHVGLVNKGMEFLKSMTEV 488 (648)
Q Consensus 464 ~ll~~~~~~g~~~~A~~~~~~~~~~ 488 (648)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234567777777777776654
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.47 E-value=62 Score=27.76 Aligned_cols=47 Identities=15% Similarity=0.021 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCC
Q 037816 191 VTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQL 237 (648)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 237 (648)
..+-...+..+.+.|..+....+.+.+..++...-...+.++...+.
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 33333334444444443333333333333444444444444444444
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.06 E-value=58 Score=29.37 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHh
Q 037816 376 LGKQIHSLIIKSDFTSNPFV--NNGLINMYSKCGDLEDSIKVFS 417 (648)
Q Consensus 376 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 417 (648)
...++.+.+.+.|..++... -.+.+...++.|..+-+..+++
T Consensus 197 ~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp THHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33445555555554433211 1122333344555555555554
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.43 E-value=51 Score=27.26 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816 523 VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595 (648)
Q Consensus 523 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 595 (648)
.+.|+.....-+...-..++ +..+|..+... +-.-+..|...+..+...|++.+|.++|+.-++.+..|.
T Consensus 59 YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred hccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34455544444432222233 44566666543 344456677777777777888888888777777665543
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.02 E-value=76 Score=27.71 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=9.3
Q ss_pred HhcCCchHHHHHHHHHHHcC
Q 037816 131 LRNGEFDMGFGFFKRSLELG 150 (648)
Q Consensus 131 ~~~g~~~~A~~~~~~m~~~~ 150 (648)
++.|+.+.+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 44455554444444444444
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.47 E-value=70 Score=27.45 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC
Q 037816 134 GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189 (648)
Q Consensus 134 g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (648)
++..++.++|..|...|+.......|..-...+...|++..|..+++.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34567778888888777766655455566666666666666666666666655444
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.02 E-value=58 Score=29.34 Aligned_cols=210 Identities=9% Similarity=-0.064 Sum_probs=99.6
Q ss_pred HHHHHHhcCCChhHHHHhhccCCCCCcc---cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHh-HHHHHHHHhhcc
Q 037816 94 SLLSFYLKCDQMRNAVKLFDDMPMRDTV---SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQA-SFTIILSACDRS 169 (648)
Q Consensus 94 ~li~~~~~~g~~~~A~~~~~~~~~~~~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~~ll~~~~~~ 169 (648)
..+...++.|+.+.+..+++.-..++.. .-.+.+...+..|+.+ +++.+.+.|..++... .-...+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4455667788888888888765433221 1123344456667754 4444555565443220 111223333444
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHhHhcCChhHHHHHhcccCCCCcc-------------cHHHHHHHHHH
Q 037816 170 ELSLVSKMIHCLVYLCGYEEEVTV--GNALITSYFKCGSSSSGRKVFGEMRVRNVI-------------TWTAVISGLVQ 234 (648)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~li~~~~~ 234 (648)
|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-...+++.-..++.. ..+ .+...+.
T Consensus 83 ~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~ 157 (285)
T 1wdy_A 83 GSVKLL----KLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAE 157 (285)
T ss_dssp TCHHHH----HHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHH
T ss_pred CCHHHH----HHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHH
Confidence 555444 34444554443211 112344455677777776666654432211 112 2333444
Q ss_pred CCCchHHHHHHHHHHhCCCCCChh---hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCCHH
Q 037816 235 NQLYEEGLKLFVKMHLGLINPNSL---TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI--ESALMDMYSKCGSVE 309 (648)
Q Consensus 235 ~g~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 309 (648)
.|+.+-+..+++. .|..++.. -.+. +...+..++.....++.+.+.+.|..++... ..+.+...++.|+.+
T Consensus 158 ~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 158 KGHVEVLKILLDE---MGADVNACDNMGRNA-LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HTCHHHHHHHHHT---SCCCTTCCCTTSCCH-HHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHh---cCCCCCccCCCCCCH-HHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 5555443333332 14333321 1222 2333344554445566667777776554321 123344455566666
Q ss_pred HHHHHHH
Q 037816 310 DAWQIFE 316 (648)
Q Consensus 310 ~A~~~~~ 316 (648)
-+.-+++
T Consensus 234 ~v~~Ll~ 240 (285)
T 1wdy_A 234 LVQRLLE 240 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655555
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=50.12 E-value=99 Score=30.28 Aligned_cols=174 Identities=10% Similarity=0.010 Sum_probs=79.3
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCChhh--HHHHHHHhhccCChHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHh
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLT--YLSSVMACSGLQALCEGRQIHGILWKLALQSDLC--IESALMDMYSK 304 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 304 (648)
+...+..|+.+-+.. +.+.|..|+... ..+.+...+..|+.+-+.. +.+.|..++.. ...+.+...+.
T Consensus 18 L~~Aa~~g~~~~v~~----Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVKN----LLQRGASPNVSNVKVETPLHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHHH----HHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCCCHHHHHHH
Confidence 444456677654444 444566555432 2244555556676654444 44455443321 11234455567
Q ss_pred cCCHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhccCChhHHH
Q 037816 305 CGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---PNMVSAVLGVFGVDTSLGLGK 378 (648)
Q Consensus 305 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~ 378 (648)
.|+.+-+.-+++.-..++ ....+. +...+..|+.+.+..++ +.+..++ ....+ .+...+..|+.+.+
T Consensus 90 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v- 162 (437)
T 1n11_A 90 IGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFT-PLHVAAKYGKVRVA- 162 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCC-HHHHHHHTTCHHHH-
T ss_pred CCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCC-HHHHHHHcCCHHHH-
Confidence 778777776766544332 222222 33344556655444433 3333221 11112 23333444555433
Q ss_pred HHHHHHHHhCCCCchhH--HHHHHHHHHhCCCHHHHHHHHhhcC
Q 037816 379 QIHSLIIKSDFTSNPFV--NNGLINMYSKCGDLEDSIKVFSRMA 420 (648)
Q Consensus 379 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~ 420 (648)
+.+.+.|..++... -.+.+...+..|+.+-+.-+++.-.
T Consensus 163 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 203 (437)
T 1n11_A 163 ---ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203 (437)
T ss_dssp ---HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTC
T ss_pred ---HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 33344444333211 1112334455666666665555443
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=49.55 E-value=1.2e+02 Score=25.84 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-----hhHHHHHHHHHHHhCCCC
Q 037816 326 MTVILVGFA---QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-----LGLGKQIHSLIIKSDFTS 391 (648)
Q Consensus 326 ~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 391 (648)
+--+|+++. +-.+++.|+-++-+|.+.| .|....-..++.+.-..|. +..|...++.....|.+-
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 334556654 4589999999999999999 7777777777777665554 334444555555666543
No 286
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=48.54 E-value=1.2e+02 Score=25.27 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------------------ccHHHHHH
Q 037816 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP------------------APYILMAN 569 (648)
Q Consensus 508 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------------~~~~~l~~ 569 (648)
.|.+.+++-++... ...+..-|.+| +|-+..++..|+..++.+++...+.. ..|..++.
T Consensus 46 ngEY~R~Lf~L~~l-NT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 46 NGEYTRALFHLHKL-NTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp TTCHHHHHHHHHTC-CBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred cchHhHHHHHHHhc-chHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Q ss_pred HHHhcCChHHHHHHHHH
Q 037816 570 IYSCSGRWKERAKAIKR 586 (648)
Q Consensus 570 ~~~~~g~~~~A~~~~~~ 586 (648)
.+...|+.+||+..+..
T Consensus 123 lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhh
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.44 E-value=1e+02 Score=24.23 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCc---ccHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcCHH
Q 037816 296 SALMDMYSKCGSVEDAWQIFEFAEELDG---VSMTVILVGFAQNGF--EEEAMQLFVKMVKAGIEIDPN 359 (648)
Q Consensus 296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 359 (648)
..++.-|...|+.++|...++++..|.- .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5677788888899999999888876521 223334444444332 356777888887777655443
No 288
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=47.41 E-value=1.6e+02 Score=26.50 Aligned_cols=239 Identities=7% Similarity=-0.074 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCC----chHHHHHHHHHHHcCCCCCcHhHHHH
Q 037816 86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE----FDMGFGFFKRSLELGFYQLDQASFTI 161 (648)
Q Consensus 86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~----~~~A~~~~~~m~~~~~~p~~~~~~~~ 161 (648)
.++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|. ....+.++..+.... ++.. .-..
T Consensus 34 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d--~~~~-vr~~ 110 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALND--KSAC-VRAT 110 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHC--SCHH-HHHH
T ss_pred cCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCHH-HHHH
Q ss_pred HHHHhhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCC-Cc
Q 037816 162 ILSACDRSE--LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQ-LY 238 (648)
Q Consensus 162 ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 238 (648)
.+.++...+ +......+...+.+.--.++..+-...+.++.+.|+.+..-.+.+.+..++...-...+.++...| ..
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318 (648)
Q Consensus 239 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 318 (648)
..+...+..+.. .++..+-...+.++.+.|+......+...+
T Consensus 191 ~~~~~~L~~~l~--------------------------------------d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l 232 (280)
T 1oyz_A 191 SDIRDCFVEMLQ--------------------------------------DKNEEVRIEAIIGLSYRKDKRVLSVLCDEL 232 (280)
T ss_dssp HHHHHHHHHHTT--------------------------------------CSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhc--------------------------------------CCCHHHHHHHHHHHHHhCCHhhHHHHHHHh
Q ss_pred cCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc
Q 037816 319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV 370 (648)
Q Consensus 319 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 370 (648)
.+++ .-...+.++.+.|. ..++..+.++... .++.......+....+
T Consensus 233 ~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 233 KKNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp TSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred cCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.97 E-value=63 Score=28.71 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=15.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLE 148 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~ 148 (648)
+..+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5567777888888888776654
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.33 E-value=69 Score=32.28 Aligned_cols=25 Identities=32% Similarity=0.508 Sum_probs=14.3
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHH
Q 037816 122 SWNTMVSGFLRNGEFDMGFGFFKRS 146 (648)
Q Consensus 122 ~y~~li~~~~~~g~~~~A~~~~~~m 146 (648)
.+|.+++.|...+.++.|..+..+.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3555555555566666665555554
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.76 E-value=1.3e+02 Score=24.55 Aligned_cols=55 Identities=9% Similarity=-0.074 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCCh
Q 037816 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV 191 (648)
Q Consensus 137 ~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (648)
.++.++|..|..+|+.......|..-...+...|++..|..+++.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4478888888888877777667777777778888888888888887777666643
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.54 E-value=35 Score=30.60 Aligned_cols=57 Identities=12% Similarity=-0.048 Sum_probs=32.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCcHh------HHHHHHHHh--hccCChHHHHHHHHHHH
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQA------SFTIILSAC--DRSELSLVSKMIHCLVY 183 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------~~~~ll~~~--~~~~~~~~a~~~~~~~~ 183 (648)
+...++.|+.+....+++.+.+.|..++... -...|..++ ++.|..+.++.+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3344667888887777777777665555331 112233222 25677777776666543
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.53 E-value=1.1e+02 Score=26.54 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=26.0
Q ss_pred HHHhcCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 037816 97 SFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151 (648)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~ 151 (648)
...++.|+.+....+++.-..+ +..-. +.+...++.|+.+- ++.+.+.|.
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~~~ 66 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDL----VKYYISKGA 66 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHH----HHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHH----HHHHHHcCC
Confidence 3345678887777777654322 22222 23444566666543 344444443
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.10 E-value=90 Score=28.45 Aligned_cols=119 Identities=8% Similarity=0.036 Sum_probs=59.3
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037816 469 CSHVGLVNKGMEFLKSMTEVHRISPRA---EHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545 (648)
Q Consensus 469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 545 (648)
.+..|+.+-+..+++. |..++. .-+.+.+...+..|+.+-+.-+++......+...-.+.+...+..|+.+-
T Consensus 102 A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp HHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 3455665544444433 333322 22223444555677777666666655222222122334445567788887
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 037816 546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET 596 (648)
Q Consensus 546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 596 (648)
+..+++.-...+..+..-....+......|+. ++.+.+.+.|..++.
T Consensus 177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTT
T ss_pred HHHHHHcCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCC
Confidence 77777765554433322222211222334553 455666777776665
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.01 E-value=88 Score=24.60 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=41.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCH
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAPRN---SVSWNSMIAAFARHGN--GFKALELYEEMKLEGVEPTD 459 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 459 (648)
...++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3557778888889999999988887652 2334444455554432 35666777777776644433
No 296
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.94 E-value=95 Score=28.31 Aligned_cols=13 Identities=0% Similarity=-0.171 Sum_probs=5.5
Q ss_pred hcCChhHHHHHhc
Q 037816 203 KCGSSSSGRKVFG 215 (648)
Q Consensus 203 ~~g~~~~A~~~~~ 215 (648)
..|+.+-+..+++
T Consensus 40 ~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 40 ADNNVRLVCTLLN 52 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444443
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.17 E-value=99 Score=25.17 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcCHH
Q 037816 296 SALMDMYSKCGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGF--EEEAMQLFVKMVKAGIEIDPN 359 (648)
Q Consensus 296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~ 359 (648)
..++.-|...|+.++|...++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 567777888888899988888887652 1223334444444322 456777787887777554443
No 298
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.96 E-value=1.4e+02 Score=25.36 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHH
Q 037816 511 LIEARSFIERMPVKPDV--LVW-----QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581 (648)
Q Consensus 511 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 581 (648)
++.|+.+|+.++-.-|. ... ...+..|.+.|.+++|.+++++.....+.+...-.-|..+-.+..-+...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 56677777777322221 111 223345788888888888888887776666555555555444444333333
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=41.00 E-value=3.4e+02 Score=28.44 Aligned_cols=27 Identities=11% Similarity=-0.000 Sum_probs=20.9
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHhhh
Q 037816 47 ISRLLSISAKEGHFHLGPSLHASFIKT 73 (648)
Q Consensus 47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 73 (648)
.=.++--|.|+|++++|.++.++....
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~ 181 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN 181 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 445677888999999999888777544
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=40.88 E-value=1e+02 Score=26.30 Aligned_cols=45 Identities=7% Similarity=-0.015 Sum_probs=33.7
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC
Q 037816 328 VILVGFA---QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372 (648)
Q Consensus 328 ~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 372 (648)
-+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 45889999999999999998887777777776665544
No 301
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=40.13 E-value=2.3e+02 Score=26.34 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=42.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816 518 IERMPVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590 (648)
Q Consensus 518 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 590 (648)
|...++.|. ..+....+....+.+++..|-.+.++++++.|.. ...++|.+++..--+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 334455653 4456777778899999999999999999999853 2345577776665443
No 302
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.88 E-value=1.8e+02 Score=25.09 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=46.0
Q ss_pred cHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-----hhHHHHHHHHHHHhCCCC
Q 037816 325 SMTVILVGFA---QNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-----LGLGKQIHSLIIKSDFTS 391 (648)
Q Consensus 325 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 391 (648)
.+.-+|+++. +-.+++.|+-++-+|++.|-.|....-..++.+.-..|. +..|...++.....|.|-
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444666654 458999999999999999988887777777777655543 334445555555566443
No 303
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.80 E-value=2.8e+02 Score=27.40 Aligned_cols=126 Identities=15% Similarity=0.087 Sum_probs=64.8
Q ss_pred HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037816 386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF 462 (648)
Q Consensus 386 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 462 (648)
+.|++--...|..-.+.+...|++++|-++-...+. ++..|.+.+-..-...|+..-.+.+|..+.+.| +.+..--
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 344444444555556666677777777766655443 234444433333333455555666666666665 4454443
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816 463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
.-+++.-...|+.+....++.+= .+..+...-..+ +..+..-|+.+|.+.
T Consensus 433 lEl~r~vL~q~r~~llekWl~e~----KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLKED----KLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHT----CSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHHhcC----CccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 44555555566655555444433 444444332222 333455555555555
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.57 E-value=78 Score=31.88 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hh--HH-HHHHHHhhhcCCHHHHHHHHHhC
Q 037816 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AE--HY-ACVVDMVGRAGLLIEARSFIERM 521 (648)
Q Consensus 459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~--~~-~~l~~~~~~~g~~~~A~~~~~~~ 521 (648)
...++.+++.|...+.+++|..+..+.. ++.+ .. .| -.+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3457777788888888888888888773 2221 11 11 22355566777888887777665
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.94 E-value=2e+02 Score=27.91 Aligned_cols=360 Identities=11% Similarity=0.034 Sum_probs=176.9
Q ss_pred HHHHHhHhcCChhHHHHHhcccCCCCc---ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHhhcc
Q 037816 196 ALITSYFKCGSSSSGRKVFGEMRVRNV---ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL--TYLSSVMACSGL 270 (648)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~ 270 (648)
+.+...+..|+.+-+..+++.-..++. ... ..+...+..|+.+-+.-+++ .|..++.. .-.+.+...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHC
Confidence 355667788999999999886544432 222 33445566777665555444 34443321 112344555566
Q ss_pred CChHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHH
Q 037816 271 QALCEGRQIHGILWKLALQSDLCI--ESALMDMYSKCGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQL 345 (648)
Q Consensus 271 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~ 345 (648)
|+.+- .+.+.+.|..++... ..+.+...+..|+.+.+..+++.-...+ ...++ .+...+..|+.+ +
T Consensus 91 g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~ 161 (437)
T 1n11_A 91 GHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----V 161 (437)
T ss_dssp TCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----H
T ss_pred CCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----H
Confidence 77654 455556666554321 1234556677899988888887654422 22222 334445667654 4
Q ss_pred HHHHHHcCCCcCHH---HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhCCCHHHHHHHHhhcC
Q 037816 346 FVKMVKAGIEIDPN---MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN--NGLINMYSKCGDLEDSIKVFSRMA 420 (648)
Q Consensus 346 ~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~ 420 (648)
++.+.+.|..++.. ..+ .+...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+-+..+++.-.
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 44555566554431 122 233344555554 44455556655443211 123445567888888888877543
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 037816 421 PR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD---VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494 (648)
Q Consensus 421 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 494 (648)
.. +....+.|. ..+..|..+ +++.+.+.|..++. ...+ .+...+..|..+-+..+++. |..++
T Consensus 237 ~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~ 305 (437)
T 1n11_A 237 SANAESVQGVTPLH-LAAQEGHAE----MVALLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKH-----GVMVD 305 (437)
T ss_dssp CTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHH-----TCCTT
T ss_pred CCCCCCCCCCCHHH-HHHHCCCHH----HHHHHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhC-----CccCC
Confidence 32 222233333 334556644 34444555544432 1222 33344456666544444332 44432
Q ss_pred hh--HHHHHHHHhhhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816 495 AE--HYACVVDMVGRAGLLIEARSFIERMPVKP---DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569 (648)
Q Consensus 495 ~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 569 (648)
.. .-.+.+...+..|+.+-+.-+++.- ..+ |..-++ .+...+..|..+-...+++.-...+..+..-...+ .
T Consensus 306 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t-~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l-~ 382 (437)
T 1n11_A 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYS-PLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL-A 382 (437)
T ss_dssp CCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHH-H
T ss_pred CCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCC-HHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHH-H
Confidence 21 1112234445677777666666543 222 211122 23334566777654444443222121121111111 2
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 037816 570 IYSCSGRWKERAKAIKRMKE 589 (648)
Q Consensus 570 ~~~~~g~~~~A~~~~~~m~~ 589 (648)
...+.|. .+..++++...+
T Consensus 383 ~A~~~g~-~~~~~~l~~~~~ 401 (437)
T 1n11_A 383 IAKRLGY-ISVTDVLKVVTD 401 (437)
T ss_dssp HHHHTTC-HHHHHHHHHHCC
T ss_pred HHHHcCc-HHHHHHHHhccc
Confidence 2233444 556667766644
No 306
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=38.64 E-value=92 Score=31.38 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=36.4
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816 536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588 (648)
Q Consensus 536 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 588 (648)
...-...++.|...|.++....|.+..+|+.++-.....|+.-+|.-+|-+..
T Consensus 161 L~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33344556777777787777888777777777777777777766665554443
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.51 E-value=1.7e+02 Score=24.18 Aligned_cols=57 Identities=7% Similarity=-0.130 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhH
Q 037816 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV 193 (648)
Q Consensus 137 ~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (648)
+.+.++|..|..+|+.......|..-...+...|++..|..++..-++.+..|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 447778888888888777766777777777888888888888888887776665443
No 308
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.16 E-value=1.3e+02 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=14.6
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHh
Q 037816 391 SNPFVNNGLINMYSKCGDLEDSIKVFS 417 (648)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (648)
+++......+..+.+.|+.++|.++|-
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 334444445555566666666665553
No 309
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.63 E-value=2.1e+02 Score=24.71 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=10.4
Q ss_pred HHHHhcCCChhHHHHhhc
Q 037816 96 LSFYLKCDQMRNAVKLFD 113 (648)
Q Consensus 96 i~~~~~~g~~~~A~~~~~ 113 (648)
+...++.|+.+.+..+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455677666666655
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.10 E-value=77 Score=25.82 Aligned_cols=63 Identities=11% Similarity=0.225 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 037816 396 NNGLINMYSKCGDLEDSIKVFSRMAPRN---SVSWNSMIAAFARHGN--GFKALELYEEMKLEGVEPT 458 (648)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 458 (648)
...++.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567788888889999999998887652 2344444555554322 3456667777776664443
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.89 E-value=1.5e+02 Score=24.76 Aligned_cols=179 Identities=7% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHhHhcCChhHHHHHhcccC----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH--HHHHHHhhccC
Q 037816 198 ITSYFKCGSSSSGRKVFGEMR----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY--LSSVMACSGLQ 271 (648)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~ 271 (648)
+...+..|+.+....++..-. ..+..-++.|..+..... .++++.+.+.|..++.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc-cC---CCcccHHHHHHHHHHcCCHHHHHHHHH
Q 037816 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA-EE---LDGVSMTVILVGFAQNGFEEEAMQLFV 347 (648)
Q Consensus 272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 347 (648)
+.+-+..+++. ....+........+.+...+..|+.+-+.-+++.- .. .|..-.+.+..+.........-.++++
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHHcCCCcCHHHHH--HHHHHHhccCChhHHHHHHH
Q 037816 348 KMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHS 382 (648)
Q Consensus 348 ~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 382 (648)
.+.+.|..++..... +-+......|+.+.+..+++
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.54 E-value=1.3e+02 Score=26.74 Aligned_cols=91 Identities=7% Similarity=-0.176 Sum_probs=46.4
Q ss_pred HHHHHHCCCchHHHHHHHHHHhCCCCCChhh-------HHHHHHHhh--ccCChHHHHHHHHHHHHhc---------CC-
Q 037816 229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLT-------YLSSVMACS--GLQALCEGRQIHGILWKLA---------LQ- 289 (648)
Q Consensus 229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 289 (648)
+...++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777777777776666555555332 233333332 5677776666665543311 00
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037816 290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEE 320 (648)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 320 (648)
.|..- .+.+...+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRG-QTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEES-BCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCC-CCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 00011 2233445566777766666665433
No 313
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=35.14 E-value=3.7e+02 Score=27.17 Aligned_cols=70 Identities=13% Similarity=-0.024 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHH----HHHHHH-hcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816 523 VKPDVLVWQALLGACSIHGDSEMGKY----AAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592 (648)
Q Consensus 523 ~~p~~~~~~~l~~~~~~~g~~~~A~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 592 (648)
..+|......|-.-+...|-.++-++ +++.-+ +..|.+......+..-|.+.|++-+|.+++-.+...+.
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 35666666677777777776555433 122222 23466666777788888899999999999999988744
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.96 E-value=1.2e+02 Score=26.52 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhc--CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037816 545 MGKYAAEKLFLA--QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594 (648)
Q Consensus 545 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 594 (648)
.+..+|..+... +-.-...|...+..+...|++++|.++|+.=++.+.+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444566666543 34445566677777777777777777777766655433
No 315
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.19 E-value=3.1e+02 Score=30.40 Aligned_cols=86 Identities=6% Similarity=-0.156 Sum_probs=46.6
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC-----------------
Q 037816 465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKP----------------- 525 (648)
Q Consensus 465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p----------------- 525 (648)
++..|...|.++-|.++.. -.+.++..--.+..+|...|++++|.+.|+++ ++.+
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4455555666554443222 12223333334556666777777777777766 2211
Q ss_pred ------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816 526 ------DVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556 (648)
Q Consensus 526 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 556 (648)
...-|..++..+.+.+.++-++++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124555666666667777777777776653
No 316
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.17 E-value=2.8e+02 Score=30.66 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037816 297 ALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV 350 (648)
Q Consensus 297 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 350 (648)
.++..+...|..+-|.++...... ++..--.+..+|...|++++|...|++.-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 367777888888888877666655 44333456778999999999999998763
No 317
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=27.16 E-value=54 Score=23.67 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHHhcCcccC
Q 037816 619 QADTIHGVLAELLRLMIDEGYVPN 642 (648)
Q Consensus 619 ~~~~~~~~~~~~~~~m~~~g~~p~ 642 (648)
+.-++.+.+++..++++..|+.||
T Consensus 14 dlirIl~~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCC
Confidence 345777888999999999999998
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.67 E-value=1.4e+02 Score=26.12 Aligned_cols=53 Identities=8% Similarity=-0.144 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC
Q 037816 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE 189 (648)
Q Consensus 137 ~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (648)
+.+.++|..|...|+.......|..-...+...|++..|..++..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45556666666666655555455555555555666666666666555555444
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.23 E-value=4e+02 Score=24.79 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCC
Q 037816 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQ 289 (648)
Q Consensus 243 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 289 (648)
++++.+.+.|+.|...++..++..++..=.++.+.++|+.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 56667777889998889999998888888899999999999888754
No 320
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.96 E-value=1.2e+02 Score=26.80 Aligned_cols=90 Identities=8% Similarity=-0.093 Sum_probs=43.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCc-----HhHHHHHHHHhhcc---CChHHHHHHHHHHHHhCCCC---------
Q 037816 127 VSGFLRNGEFDMGFGFFKRSLELGFYQLD-----QASFTIILSACDRS---ELSLVSKMIHCLVYLCGYEE--------- 189 (648)
Q Consensus 127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~--------- 189 (648)
+...++.|+.+....+++.+.+.|..++. ...-...+..++.. |+.+.++.+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 85 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD 85 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence 34446677777766677766666654433 10111222333333 66666666665443322100
Q ss_pred -ChhHHHHHHHHhHhcCChhHHHHHhccc
Q 037816 190 -EVTVGNALITSYFKCGSSSSGRKVFGEM 217 (648)
Q Consensus 190 -~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (648)
|..- .+.+...+..|+.+-+..+++.-
T Consensus 86 ~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 86 EFYQG-HSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp TTTTT-CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ccccC-CCHHHHHHHcCCHHHHHHHHHcC
Confidence 0111 12334445566666666666553
No 321
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.23 E-value=2e+02 Score=24.73 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=5.6
Q ss_pred HhcCCHHHHHHHHH
Q 037816 303 SKCGSVEDAWQIFE 316 (648)
Q Consensus 303 ~~~~~~~~A~~~~~ 316 (648)
+..|+.+-+.-+++
T Consensus 117 ~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 117 AQFGHTSIVAYLIA 130 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHh
Confidence 33444443333333
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.20 E-value=4.5e+02 Score=24.65 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHHH
Q 037816 225 WTAVISGLVQNQLYEEGLKLFVKMH 249 (648)
Q Consensus 225 ~~~li~~~~~~g~~~~a~~~~~~m~ 249 (648)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3556666666777777777766663
No 323
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.87 E-value=1.5e+02 Score=19.97 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816 426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG 473 (648)
Q Consensus 426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 473 (648)
.++.++..++...-.++++-.+++..+.| ..+..+|.--++.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45667777777777788888888888877 566666666666555543
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.34 E-value=2e+02 Score=27.13 Aligned_cols=215 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHH
Q 037816 261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340 (648)
Q Consensus 261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 340 (648)
.+.|...+..|+.+.+..+++. ...+........+.+...+..|+.+-+.-+++.-...+...-...+...+..|+.+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~ 98 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTD 98 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHH
Q ss_pred HHHHHHHHHHHcCCCcCH--------------------HHHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816 341 EAMQLFVKMVKAGIEIDP--------------------NMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGL 399 (648)
Q Consensus 341 ~a~~~~~~m~~~~~~p~~--------------------~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 399 (648)
-+..+++.....|..++. ...+.|..++.... +.+.+..+++. ...+......-.+.
T Consensus 99 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d~~g~t~ 176 (364)
T 3ljn_A 99 LVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKDKADETP 176 (364)
T ss_dssp HHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCCTTSCCH
T ss_pred HHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccCCCCCCH
Q ss_pred HHHHHhCCCHHHHHHHHhh--------cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHH
Q 037816 400 INMYSKCGDLEDSIKVFSR--------MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL--SLLHAC 469 (648)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~ 469 (648)
+...+..|+.+-+..+++. +...+..-++.|..+..... .++.+.+.+.|..++..... +-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q ss_pred hccCcHHHHHHHHHH
Q 037816 470 SHVGLVNKGMEFLKS 484 (648)
Q Consensus 470 ~~~g~~~~A~~~~~~ 484 (648)
+..|..+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
No 325
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.33 E-value=1e+02 Score=22.36 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=17.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHH
Q 037816 563 PYILMANIYSCSGRWKERAKAIKRM 587 (648)
Q Consensus 563 ~~~~l~~~~~~~g~~~~A~~~~~~m 587 (648)
.+...++.+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3455667777778888887666554
No 326
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.28 E-value=1e+02 Score=22.70 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHH
Q 037816 306 GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAM 343 (648)
Q Consensus 306 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 343 (648)
...++|.++++.+..+.+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.52 E-value=2e+02 Score=22.94 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510 (648)
Q Consensus 450 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 510 (648)
+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 4445555544322 2223333333344455555555443 333344444444444444443
No 328
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.52 E-value=2.1e+02 Score=25.43 Aligned_cols=19 Identities=0% Similarity=-0.233 Sum_probs=11.2
Q ss_pred HHhHhcCChhHHHHHhccc
Q 037816 199 TSYFKCGSSSSGRKVFGEM 217 (648)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~ 217 (648)
...+..|+.+-+.-+++.-
T Consensus 106 ~~A~~~g~~~~v~~Ll~~g 124 (273)
T 2pnn_A 106 HIAIERRNMTLVTLLVENG 124 (273)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHCC
Confidence 3345566776666666553
No 329
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.52 E-value=3.5e+02 Score=22.47 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=11.4
Q ss_pred HHHHHHHhhhcC-CHHHHHHHHHhC
Q 037816 498 YACVVDMVGRAG-LLIEARSFIERM 521 (648)
Q Consensus 498 ~~~l~~~~~~~g-~~~~A~~~~~~~ 521 (648)
...++..+.+.| .++.+..+++.+
T Consensus 139 ~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 139 QNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 344455555555 244444455444
No 330
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.18 E-value=5.3e+02 Score=24.43 Aligned_cols=229 Identities=11% Similarity=0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHC-
Q 037816 157 ASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN- 235 (648)
Q Consensus 157 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~- 235 (648)
.....++.-|...++.+++...++.+......+.......-...=.+...-+.+-.++..+. .+..+-..+..++...
T Consensus 55 k~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 55 KTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Q ss_pred -----------CCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh------------------
Q 037816 236 -----------QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL------------------ 286 (648)
Q Consensus 236 -----------g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------------ 286 (648)
.-++-.-.++..+...++-|-.......... .-+.+.++++.....
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Q ss_pred cCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcCH
Q 037816 287 ALQSDLCI---ESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNG--FEEEAMQLFVKMVKAGIEIDP 358 (648)
Q Consensus 287 ~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~ 358 (648)
|..|.... ...++.-|...++.++|...++++..| ......++..++-+.+ ..+...+++..+...|+-+..
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Q ss_pred HHHHHHHHHHhccCC--------hhHHHHHHHHHHHhCCCC
Q 037816 359 NMVSAVLGVFGVDTS--------LGLGKQIHSLIIKSDFTS 391 (648)
Q Consensus 359 ~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~ 391 (648)
.....+...+....+ +....++...++..|+-+
T Consensus 289 q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~varai~~g~l~ 329 (358)
T 3eiq_C 289 QMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 329 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHhccHhhcccccHHHHHHHHHHHHHHCCCCC
No 331
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.97 E-value=2.4e+02 Score=20.32 Aligned_cols=66 Identities=6% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH
Q 037816 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL 244 (648)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 244 (648)
...+++.+.+.| -.+..-+..+-.. ....++|.++++.++.++..+|..++.++...+...-|..+
T Consensus 24 v~~lld~L~~~~-vlt~~~~e~I~~~---~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISDG-FLTISEEEKVRNE---PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHHT-SSCHHHHHHHHTS---SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHcC---CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.61 E-value=2.8e+02 Score=22.29 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC
Q 037816 137 DMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG 205 (648)
Q Consensus 137 ~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 205 (648)
.....+-+.+.+.|+.++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 9 ~~~~~~~~~l~~~g~r~T~q--R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 9 SILERLRMSIKKNGLKNSKQ--REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHCC--CHHH--HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 333
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.48 E-value=4e+02 Score=23.85 Aligned_cols=62 Identities=8% Similarity=-0.033 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHhhccCC--------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 037816 88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMP--------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ 153 (648)
Q Consensus 88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 153 (648)
+.......+...+..|+.++..+.....+ ..|..-++.| ...+..|+.+- ++.+.+.|..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L-~~Aa~~g~~~~----v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPM-HEAAIHGHQLS----LRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHH-HHHHHTTCHHH----HHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHH-HHHHHcCCHHH----HHHHHHCCCCC
Confidence 34445566777788888877777443321 2233334444 34456677644 44444555444
Q ss_pred C
Q 037816 154 L 154 (648)
Q Consensus 154 ~ 154 (648)
+
T Consensus 86 ~ 86 (285)
T 3d9h_A 86 N 86 (285)
T ss_dssp C
T ss_pred C
Confidence 3
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.34 E-value=85 Score=23.15 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=29.0
Q ss_pred CChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHH
Q 037816 205 GSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242 (648)
Q Consensus 205 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 242 (648)
.+.++|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887666655443
Done!