BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037818
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 46 LLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 105
L+ + G+S + L + LM +W + +AVLD I PF K +G A+ Y+G P N
Sbjct: 115 LVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFN 173
Query: 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165
+ K MS S + +L+ Y GF+G+K LVDVGG G + I+ K+ I +GINFDL
Sbjct: 174 KVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDL 232
Query: 166 PEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
P V+ +APS GV H+GGD F SIP ADA+FMKW
Sbjct: 233 PHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKW 266
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 35/213 (16%)
Query: 20 LSASQILTRILPSGDGDAENL-QRILRLLTSYG--------------------------- 51
L+ +++ ++ + + +A ++ RILRLL SY
Sbjct: 57 LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFL 116
Query: 52 -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
G+S A L + LM +W + +AVLD I PF K +G A+ Y+G P N
Sbjct: 117 TPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNR 175
Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
+ + M S+ +L+ Y+GF+G+ LVDVGG G + I H +G+NFDLP
Sbjct: 176 VFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAI-AAHYPTIKGVNFDLP 234
Query: 167 EVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
V+ EAP GVTH+GGD FK +P+ D I MKW
Sbjct: 235 HVISEAPQFPGVTHVGGDMFKEVPSGDTILMKW 267
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 28 RILPSGDGDA-ENLQRILRLLT-SYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEP 85
R LPSG + L + + LT + G+S AP++L L+ W + +A+L+ I P
Sbjct: 98 RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-P 156
Query: 86 FVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD 145
F K +G + Y+G +N + K MS S + +L+ YNGF+G+ +VDVGG G
Sbjct: 157 FNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGA 216
Query: 146 CLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
MI+ K+ I INFDLP V+ +AP+ GV H+GGD F +P DAIF+KW
Sbjct: 217 VASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKW 269
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 66 ALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLD 125
AL+ W EAV+D I+ F VHG Y + GK +MN + K+M V + +L+
Sbjct: 143 ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202
Query: 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDT 185
Y GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + G+ H+GGD
Sbjct: 203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDM 261
Query: 186 FKSIPAADAIFMK 198
F S+P DA+ +K
Sbjct: 262 FASVPQGDAMILK 274
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 66 ALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLD 125
AL+ W EAV+D I+ F VHG Y + GK + N + K+ V L+
Sbjct: 143 ALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLE 202
Query: 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDT 185
Y GF+G+ LVDVGG +G L +I+ K+ I +GINFDLP+V+ AP + G+ H+GGD
Sbjct: 203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDX 261
Query: 186 FKSIPAADAIFMK 198
F S+P DA +K
Sbjct: 262 FASVPQGDAXILK 274
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 35/210 (16%)
Query: 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG------------GLSYAPYMLQHHQDA 66
P+S S +++ IL N++R++R L G L+ A +L D
Sbjct: 51 PISLSNLVS-ILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDL 109
Query: 67 LMSAWPLVHEAVLDPTIE----------------PFVKVHGEPAYSYYGKMPEMNGLMRK 110
++ P+V E VLDPT+ F G + + K PE N
Sbjct: 110 CLA--PMV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVV 169
AM+ S ++ D F G++ +VDVGG G ++I + + C I FD P+VV
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKC--IVFDRPQVV 224
Query: 170 GEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
+T++GGD F SIP ADA+ +K+
Sbjct: 225 ENLSGSNNLTYVGGDMFTSIPNADAVLLKY 254
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 47/223 (21%)
Query: 10 GKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------G 52
GK + L+N L IL +N+QR++R L G
Sbjct: 49 GKPITLSN--------LVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYA 100
Query: 53 LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEP----------------FVKVHGEPAYS 96
L+ A +L + ++ P+V E VLDPT+ F G +
Sbjct: 101 LTVASELLVKGTELCLA--PMV-ECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWE 157
Query: 97 YYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-R 155
+ K PE N L A++ S ++ D F+G++ +VDVGG G ++I + +
Sbjct: 158 FLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPK 217
Query: 156 FICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMK 198
C + FD P+VV +T++GGD F S+P ADA+ +K
Sbjct: 218 LTC--VVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLK 258
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 35/210 (16%)
Query: 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG------------GLSYAPYMLQHHQDA 66
P+S S +++ IL N++R+ R L G L+ A +L D
Sbjct: 51 PISLSNLVS-ILQVPSSKIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDL 109
Query: 67 LMSAWPLVHEAVLDPTIEP----------------FVKVHGEPAYSYYGKMPEMNGLMRK 110
++ P V E VLDPT+ F G + + K PE N
Sbjct: 110 CLA--PXV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVV 169
A + S ++ D F G++ +VDVGG G ++I + + C I FD P+VV
Sbjct: 167 AXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKC--IVFDRPQVV 224
Query: 170 GEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
+T++GGD F SIP ADA+ +K+
Sbjct: 225 ENLSGSNNLTYVGGDXFTSIPNADAVLLKY 254
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91 GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
+I H + FD P+VVG + +GGD FKSIP+ADA+ +KW
Sbjct: 209 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 258
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91 GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
+I H + FD P+VVG + +GGD FKSIP+ADA+ +KW
Sbjct: 210 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 259
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91 GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
GE + + K E + L + AM+ S F + + F+G++ LVDVGG G +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
+I H + FD P+VVG + +GGD FKSIP+ADA+ +KW
Sbjct: 206 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 255
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 37/192 (19%)
Query: 36 DAENLQRILRLLTSY--------GGLSYAPY-------------MLQHHQDALMSAWPLV 74
DAE + R++RLL ++ G + P M+ + + +AW
Sbjct: 54 DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPA 113
Query: 75 HEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPF--ITSVLDGYNGFKG 132
EA+L T F GE YSY + P+ AM ++ F I +LD F+G
Sbjct: 114 CEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD----FRG 168
Query: 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILG-------VTHIGGDT 185
+ VDVGG +G+ + ILQ G+ D +G A L V+ +GGD
Sbjct: 169 -RSFVDVGGGSGELTKAILQAEP-SARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226
Query: 186 FKSIPAADAIFM 197
+ +P+ I++
Sbjct: 227 LQEVPSNGDIYL 238
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 150 ILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAA 192
I RF+ G + PEV+ + P I V G T++SIP A
Sbjct: 38 ITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 80
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 150 ILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAA 192
I RF+ G + PEV+ + P I V G T++SIP A
Sbjct: 34 ITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKA 76
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 86 FVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD 145
F +G + + P+ L +A VS+ V Y+ F G VD+GG G
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGS 215
Query: 146 CLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIG-------GDTFKSIP-AADAIFM 197
+L + G + P V EA +L + GD F++IP AD +
Sbjct: 216 LXAAVLDAFPGL-RGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLI 274
Query: 198 K 198
K
Sbjct: 275 K 275
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP---EVVGEAPSILGVTH----IGGD 184
GVK+++DVGG GD +L KH + +LP ++V E + GV I D
Sbjct: 190 GVKKMIDVGGGIGDISAAML-KHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVD 248
Query: 185 TFK-SIPAADAIF 196
+K S P ADA+
Sbjct: 249 IYKESYPEADAVL 261
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 110 KAMSGVSVPFITSVLDGYNGFKGVKQLVD-----VGGSAGDCLRMILQKHRFICEGI 161
K+ ++ + +VLDGY+G + +QLV V AG Q+ FI EG+
Sbjct: 261 KSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGV 317
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 110 KAMSGVSVPFITSVLDGYNGFKGVKQLVD-----VGGSAGDCLRMILQKHRFICEGI 161
K+ ++ + +VLDGY+G + +QLV V AG Q+ FI EG+
Sbjct: 261 KSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGV 317
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 169
++S L+G++G + + V +G D +R++ + +C GI PE +
Sbjct: 154 VSSYLNGFHG--DLNETVFIGRPDDDSVRLVHAAYECLCAGIGVVKPEAL 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,489,912
Number of Sequences: 62578
Number of extensions: 272102
Number of successful extensions: 592
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 41
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)