Query 037818
Match_columns 199
No_of_seqs 124 out of 1096
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037818.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037818hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 3E-31 6.5E-36 212.0 10.3 144 53-199 22-166 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 1.8E-29 3.9E-34 205.9 11.6 194 3-199 23-244 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 3.8E-28 8.2E-33 200.5 13.1 181 4-199 8-223 (306)
4 PF12847 Methyltransf_18: Meth 98.8 5.2E-09 1.1E-13 73.3 4.9 65 133-198 2-77 (112)
5 PRK08287 cobalt-precorrin-6Y C 98.7 4.2E-08 9.1E-13 75.4 6.6 85 112-198 11-104 (187)
6 PRK06922 hypothetical protein; 98.7 4.6E-08 1E-12 87.2 6.5 105 92-198 377-494 (677)
7 PRK14103 trans-aconitate 2-met 98.6 1.8E-07 3.9E-12 75.3 8.2 75 121-198 19-96 (255)
8 COG4106 Tam Trans-aconitate me 98.6 1.3E-07 2.7E-12 73.3 5.7 76 120-197 19-98 (257)
9 TIGR03587 Pse_Me-ase pseudamin 98.5 2.7E-07 5.9E-12 72.0 6.6 67 131-198 42-112 (204)
10 PRK01683 trans-aconitate 2-met 98.5 4.8E-07 1E-11 72.8 8.3 77 120-198 20-100 (258)
11 PF13847 Methyltransf_31: Meth 98.5 2.7E-07 5.7E-12 68.5 4.8 66 132-198 3-80 (152)
12 PF05175 MTS: Methyltransferas 98.5 1.8E-07 3.8E-12 71.0 3.9 66 132-198 31-105 (170)
13 PRK15001 SAM-dependent 23S rib 98.4 4.7E-07 1E-11 76.8 6.5 76 121-198 218-305 (378)
14 TIGR00740 methyltransferase, p 98.4 3.9E-07 8.4E-12 72.7 5.5 67 131-198 52-129 (239)
15 TIGR02752 MenG_heptapren 2-hep 98.4 6.2E-07 1.3E-11 71.0 6.6 75 122-198 36-121 (231)
16 smart00138 MeTrc Methyltransfe 98.4 1.8E-05 4E-10 64.2 15.0 154 24-199 10-211 (264)
17 PRK15451 tRNA cmo(5)U34 methyl 98.4 3.6E-07 7.9E-12 73.3 4.8 67 131-198 55-132 (247)
18 TIGR03533 L3_gln_methyl protei 98.4 4.8E-07 1E-11 74.1 5.3 66 132-198 121-196 (284)
19 PRK11805 N5-glutamine S-adenos 98.4 3.7E-07 8E-12 75.6 4.6 64 134-198 135-208 (307)
20 PRK04457 spermidine synthase; 98.4 5E-07 1.1E-11 73.2 4.8 66 131-197 65-142 (262)
21 PF08100 Dimerisation: Dimeris 98.3 7.1E-08 1.5E-12 58.1 -0.9 44 3-48 3-51 (51)
22 COG2890 HemK Methylase of poly 98.3 7.5E-07 1.6E-11 72.8 4.4 63 135-198 113-183 (280)
23 TIGR00536 hemK_fam HemK family 98.3 1.1E-06 2.3E-11 72.0 5.0 64 134-198 116-189 (284)
24 TIGR02469 CbiT precorrin-6Y C5 98.3 3.1E-06 6.8E-11 59.9 6.7 74 123-198 11-95 (124)
25 PTZ00098 phosphoethanolamine N 98.3 2.3E-06 4.9E-11 69.4 6.6 76 120-198 41-124 (263)
26 COG2226 UbiE Methylase involve 98.2 2.8E-06 6E-11 67.6 6.4 66 132-198 51-126 (238)
27 PRK11207 tellurite resistance 98.2 2.9E-06 6.3E-11 65.8 5.9 74 121-198 20-102 (197)
28 COG2813 RsmC 16S RNA G1207 met 98.2 5.8E-06 1.3E-10 67.5 7.2 76 121-198 148-231 (300)
29 PLN02244 tocopherol O-methyltr 98.2 4.8E-06 1E-10 69.9 7.0 65 131-197 117-192 (340)
30 PRK00107 gidB 16S rRNA methylt 98.2 4.1E-06 8.9E-11 64.5 6.0 66 132-198 45-119 (187)
31 PRK01544 bifunctional N5-gluta 98.2 2.1E-06 4.5E-11 75.8 4.8 65 133-198 139-213 (506)
32 TIGR03534 RF_mod_PrmC protein- 98.2 4.1E-06 8.8E-11 66.9 6.1 65 132-197 87-160 (251)
33 PF08242 Methyltransf_12: Meth 98.2 5.2E-07 1.1E-11 61.9 0.8 61 137-198 1-73 (99)
34 PRK11036 putative S-adenosyl-L 98.2 3.9E-06 8.4E-11 67.6 5.9 71 123-198 37-119 (255)
35 smart00828 PKS_MT Methyltransf 98.2 2.9E-06 6.4E-11 66.8 5.1 63 134-197 1-73 (224)
36 TIGR00138 gidB 16S rRNA methyl 98.2 2.6E-06 5.7E-11 65.3 4.4 65 133-198 43-116 (181)
37 TIGR00091 tRNA (guanine-N(7)-) 98.1 2.6E-06 5.6E-11 65.9 4.2 66 132-198 16-94 (194)
38 TIGR02021 BchM-ChlM magnesium 98.1 6.6E-06 1.4E-10 64.7 6.6 64 131-197 54-125 (219)
39 PRK09489 rsmC 16S ribosomal RN 98.1 6.1E-06 1.3E-10 69.3 6.7 75 122-198 187-268 (342)
40 PRK10258 biotin biosynthesis p 98.1 1.5E-05 3.2E-10 63.9 8.4 75 120-198 31-110 (251)
41 PLN02336 phosphoethanolamine N 98.1 8E-06 1.7E-10 71.5 7.3 74 122-198 257-339 (475)
42 PRK14966 unknown domain/N5-glu 98.1 4.6E-06 1E-10 71.3 5.4 65 133-198 252-326 (423)
43 PRK08317 hypothetical protein; 98.1 9.9E-06 2.1E-10 63.8 6.9 74 123-198 11-94 (241)
44 COG2242 CobL Precorrin-6B meth 98.1 8.5E-06 1.8E-10 62.1 6.0 72 125-198 28-109 (187)
45 TIGR02072 BioC biotin biosynth 98.1 6.7E-06 1.5E-10 64.8 5.6 65 133-198 35-105 (240)
46 PRK00216 ubiE ubiquinone/menaq 98.1 1.6E-05 3.4E-10 62.8 7.6 75 122-198 42-128 (239)
47 TIGR03704 PrmC_rel_meth putati 98.1 7.6E-06 1.6E-10 65.9 5.8 65 133-198 87-160 (251)
48 PF01209 Ubie_methyltran: ubiE 98.1 3.6E-06 7.8E-11 67.0 3.7 68 130-198 45-123 (233)
49 smart00650 rADc Ribosomal RNA 98.1 1.2E-05 2.6E-10 60.7 6.4 73 121-197 3-83 (169)
50 PRK09328 N5-glutamine S-adenos 98.1 1.1E-05 2.5E-10 65.3 6.7 67 130-197 106-181 (275)
51 PLN02233 ubiquinone biosynthes 98.1 1.5E-05 3.3E-10 64.5 7.2 68 130-198 71-152 (261)
52 PF13649 Methyltransf_25: Meth 98.1 2.9E-06 6.3E-11 58.4 2.6 61 136-197 1-73 (101)
53 PRK13942 protein-L-isoaspartat 98.0 1.7E-05 3.7E-10 62.2 7.2 76 121-198 66-152 (212)
54 TIGR00080 pimt protein-L-isoas 98.0 1.5E-05 3.3E-10 62.6 6.7 76 121-198 67-153 (215)
55 TIGR01934 MenG_MenH_UbiE ubiqu 98.0 1.5E-05 3.2E-10 62.3 6.5 74 123-198 31-113 (223)
56 PLN02490 MPBQ/MSBQ methyltrans 98.0 1.6E-05 3.4E-10 66.6 6.7 66 132-198 113-185 (340)
57 PRK14121 tRNA (guanine-N(7)-)- 98.0 1.2E-05 2.6E-10 68.3 6.1 74 123-198 114-199 (390)
58 PF08241 Methyltransf_11: Meth 98.0 8.9E-06 1.9E-10 54.5 4.3 60 137-198 1-67 (95)
59 PRK00121 trmB tRNA (guanine-N( 98.0 8.7E-06 1.9E-10 63.4 4.8 65 132-197 40-117 (202)
60 PRK07402 precorrin-6B methylas 98.0 8.2E-06 1.8E-10 63.1 4.5 63 123-187 32-101 (196)
61 PRK11088 rrmA 23S rRNA methylt 98.0 1.4E-05 3.1E-10 65.0 5.9 65 132-197 85-157 (272)
62 PRK14896 ksgA 16S ribosomal RN 98.0 2E-05 4.3E-10 63.7 6.6 73 121-197 19-97 (258)
63 PRK06202 hypothetical protein; 98.0 5.5E-05 1.2E-09 60.0 8.8 67 131-198 59-136 (232)
64 PRK00274 ksgA 16S ribosomal RN 97.9 2.3E-05 4.9E-10 63.9 6.4 66 121-190 32-102 (272)
65 PLN02366 spermidine synthase 97.9 1.3E-05 2.9E-10 66.3 4.9 66 131-197 90-171 (308)
66 PRK13944 protein-L-isoaspartat 97.9 3.2E-05 7E-10 60.3 6.8 75 122-198 63-149 (205)
67 PLN03075 nicotianamine synthas 97.9 2.3E-05 4.9E-10 64.3 6.1 67 131-198 122-202 (296)
68 PF13659 Methyltransf_26: Meth 97.9 7.9E-06 1.7E-10 57.5 2.8 63 134-198 2-77 (117)
69 PHA03411 putative methyltransf 97.9 2.1E-05 4.5E-10 63.8 5.4 65 133-198 65-133 (279)
70 TIGR00537 hemK_rel_arch HemK-r 97.9 1.9E-05 4.1E-10 60.2 4.9 63 133-198 20-89 (179)
71 KOG1540 Ubiquinone biosynthesi 97.9 2.6E-05 5.7E-10 62.1 5.3 65 133-198 101-184 (296)
72 COG4123 Predicted O-methyltran 97.8 1.4E-05 3.1E-10 63.8 3.5 75 123-198 35-122 (248)
73 PRK11188 rrmJ 23S rRNA methylt 97.8 0.0001 2.3E-09 57.7 7.9 71 122-197 41-123 (209)
74 PRK05785 hypothetical protein; 97.8 4.3E-05 9.2E-10 60.6 5.6 62 133-198 52-117 (226)
75 PRK11873 arsM arsenite S-adeno 97.8 5.4E-05 1.2E-09 61.4 5.9 68 130-198 75-153 (272)
76 PRK15068 tRNA mo(5)U34 methylt 97.7 0.00013 2.8E-09 60.9 7.8 72 124-198 115-196 (322)
77 PRK00811 spermidine synthase; 97.7 3.2E-05 6.9E-10 63.4 4.1 66 131-197 75-156 (283)
78 TIGR00755 ksgA dimethyladenosi 97.7 7.8E-05 1.7E-09 60.0 6.2 69 121-193 19-93 (253)
79 PRK14968 putative methyltransf 97.7 7.1E-05 1.5E-09 56.9 5.4 65 131-198 22-97 (188)
80 TIGR00477 tehB tellurite resis 97.7 8.1E-05 1.8E-09 57.6 5.6 74 121-198 20-101 (195)
81 PHA03412 putative methyltransf 97.7 7.3E-05 1.6E-09 59.4 5.4 65 133-198 50-121 (241)
82 PRK14967 putative methyltransf 97.7 7E-05 1.5E-09 59.1 5.3 67 130-198 34-108 (223)
83 PRK00377 cbiT cobalt-precorrin 97.6 8.2E-05 1.8E-09 57.7 4.9 71 125-197 34-117 (198)
84 PRK07580 Mg-protoporphyrin IX 97.6 0.00012 2.5E-09 57.7 5.7 64 130-197 61-133 (230)
85 PRK01581 speE spermidine synth 97.6 5.4E-05 1.2E-09 63.7 3.8 68 130-198 148-233 (374)
86 PF05401 NodS: Nodulation prot 97.6 4.8E-05 1E-09 58.5 3.0 69 126-198 38-113 (201)
87 PLN02336 phosphoethanolamine N 97.6 0.00019 4.1E-09 62.9 7.0 75 120-198 26-110 (475)
88 PRK03612 spermidine synthase; 97.6 0.0001 2.2E-09 65.4 5.2 66 131-198 296-380 (521)
89 PF02353 CMAS: Mycolic acid cy 97.6 8.8E-05 1.9E-09 60.5 4.3 73 120-196 51-132 (273)
90 PLN02672 methionine S-methyltr 97.6 0.00013 2.7E-09 69.3 5.8 63 134-197 120-209 (1082)
91 PRK04266 fibrillarin; Provisio 97.5 0.00037 8.1E-09 55.3 7.3 70 126-197 67-147 (226)
92 PTZ00338 dimethyladenosine tra 97.5 0.00028 6.1E-09 58.1 6.6 73 121-197 26-107 (294)
93 PRK12335 tellurite resistance 97.5 0.00018 3.9E-09 59.0 5.5 73 122-198 111-191 (287)
94 COG2230 Cfa Cyclopropane fatty 97.5 0.00024 5.3E-09 57.8 6.0 64 121-187 62-133 (283)
95 PRK04148 hypothetical protein; 97.5 0.0003 6.5E-09 51.1 5.8 69 123-196 8-82 (134)
96 TIGR02081 metW methionine bios 97.5 0.00022 4.8E-09 55.0 5.4 64 132-198 13-82 (194)
97 PRK13943 protein-L-isoaspartat 97.5 0.00032 6.9E-09 58.5 6.5 74 122-197 71-155 (322)
98 PLN02396 hexaprenyldihydroxybe 97.5 0.00011 2.4E-09 61.3 3.7 63 133-198 132-205 (322)
99 KOG1271 Methyltransferases [Ge 97.5 0.00034 7.5E-09 53.2 6.0 65 131-196 66-141 (227)
100 TIGR00438 rrmJ cell division p 97.4 0.00049 1.1E-08 52.8 6.8 70 123-197 23-104 (188)
101 PF07021 MetW: Methionine bios 97.4 0.00018 3.9E-09 55.2 4.0 64 132-198 13-82 (193)
102 cd02440 AdoMet_MTases S-adenos 97.4 0.00036 7.7E-09 46.6 5.0 62 135-198 1-73 (107)
103 PRK00312 pcm protein-L-isoaspa 97.4 0.00052 1.1E-08 53.6 6.4 72 123-198 70-151 (212)
104 TIGR00452 methyltransferase, p 97.4 0.00079 1.7E-08 56.0 7.6 73 123-198 113-195 (314)
105 KOG3420 Predicted RNA methylas 97.4 0.00029 6.3E-09 51.6 4.2 74 122-198 39-121 (185)
106 COG0421 SpeE Spermidine syntha 97.4 0.00027 5.8E-09 57.8 4.6 68 130-198 74-156 (282)
107 PRK11705 cyclopropane fatty ac 97.3 0.00054 1.2E-08 58.6 6.3 71 122-196 158-233 (383)
108 TIGR03438 probable methyltrans 97.3 0.00032 7E-09 58.0 4.4 63 121-187 55-126 (301)
109 TIGR00406 prmA ribosomal prote 97.3 0.00039 8.4E-09 57.1 4.8 65 132-198 159-232 (288)
110 PF02390 Methyltransf_4: Putat 97.3 0.00028 6.1E-09 54.7 3.6 53 134-187 19-78 (195)
111 KOG2904 Predicted methyltransf 97.3 0.00059 1.3E-08 55.0 5.4 66 130-196 146-227 (328)
112 PRK13168 rumA 23S rRNA m(5)U19 97.2 0.00021 4.6E-09 62.1 3.0 73 122-198 288-374 (443)
113 TIGR00417 speE spermidine synt 97.2 0.00041 9E-09 56.4 4.3 66 131-197 71-151 (270)
114 PF01135 PCMT: Protein-L-isoas 97.2 0.00039 8.6E-09 54.5 4.0 76 121-198 62-148 (209)
115 PLN02823 spermine synthase 97.2 0.00047 1E-08 57.8 4.5 66 131-197 102-182 (336)
116 PF08123 DOT1: Histone methyla 97.2 0.00029 6.2E-09 55.0 3.0 76 122-199 33-130 (205)
117 PF06325 PrmA: Ribosomal prote 97.2 0.00027 5.9E-09 58.1 3.0 83 108-198 140-232 (295)
118 PRK10909 rsmD 16S rRNA m(2)G96 97.2 0.00025 5.4E-09 55.1 2.6 64 133-198 54-128 (199)
119 TIGR03840 TMPT_Se_Te thiopurin 97.2 0.0018 3.9E-08 50.9 7.4 55 131-188 33-106 (213)
120 PLN02585 magnesium protoporphy 97.2 0.00058 1.3E-08 56.8 4.9 61 133-197 145-218 (315)
121 PRK14902 16S rRNA methyltransf 97.1 0.00089 1.9E-08 58.3 5.7 73 123-197 242-326 (444)
122 PF05185 PRMT5: PRMT5 arginine 97.1 0.00063 1.4E-08 59.2 4.7 98 94-196 152-263 (448)
123 PTZ00146 fibrillarin; Provisio 97.1 0.0018 4E-08 53.1 7.0 68 130-198 130-209 (293)
124 PRK03522 rumB 23S rRNA methylu 97.1 0.00045 9.7E-09 57.5 3.6 63 133-198 174-247 (315)
125 COG2263 Predicted RNA methylas 97.1 0.00083 1.8E-08 51.4 4.7 66 130-198 44-115 (198)
126 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0011 2.4E-08 54.5 5.6 76 120-197 8-96 (296)
127 PRK00517 prmA ribosomal protei 97.1 0.00069 1.5E-08 54.4 4.2 42 131-174 118-160 (250)
128 COG4262 Predicted spermidine s 97.1 0.00086 1.9E-08 56.2 4.7 58 131-189 288-359 (508)
129 COG2264 PrmA Ribosomal protein 97.1 0.0008 1.7E-08 55.3 4.4 72 122-197 154-235 (300)
130 COG2518 Pcm Protein-L-isoaspar 97.0 0.0023 4.9E-08 49.9 6.5 73 121-197 62-144 (209)
131 TIGR01177 conserved hypothetic 97.0 0.0019 4.1E-08 54.0 6.4 73 122-198 173-255 (329)
132 PRK11727 23S rRNA mA1618 methy 97.0 0.0011 2.4E-08 55.2 4.6 66 132-198 114-196 (321)
133 PRK00536 speE spermidine synth 96.9 0.0012 2.7E-08 53.4 4.5 64 130-198 70-146 (262)
134 PLN02781 Probable caffeoyl-CoA 96.9 0.00079 1.7E-08 53.7 3.3 67 130-197 66-150 (234)
135 PRK13255 thiopurine S-methyltr 96.9 0.0034 7.4E-08 49.5 6.6 63 131-196 36-121 (218)
136 PRK10901 16S rRNA methyltransf 96.9 0.0024 5.2E-08 55.3 6.0 73 123-197 236-319 (427)
137 KOG2899 Predicted methyltransf 96.9 0.0011 2.3E-08 52.7 3.4 53 121-174 46-100 (288)
138 PF03848 TehB: Tellurite resis 96.8 0.0025 5.5E-08 49.2 5.1 72 121-196 20-99 (192)
139 KOG1500 Protein arginine N-met 96.8 0.0023 5E-08 53.2 5.0 71 122-196 168-248 (517)
140 TIGR00478 tly hemolysin TlyA f 96.8 0.0031 6.7E-08 50.1 5.6 58 120-179 63-122 (228)
141 KOG1499 Protein arginine N-met 96.7 0.0017 3.7E-08 54.0 3.8 64 132-197 60-133 (346)
142 COG0220 Predicted S-adenosylme 96.7 0.0022 4.9E-08 50.8 3.9 52 134-186 50-108 (227)
143 TIGR01444 fkbM_fam methyltrans 96.6 0.0028 6.1E-08 46.0 4.1 52 135-187 1-59 (143)
144 TIGR02085 meth_trns_rumB 23S r 96.6 0.0011 2.3E-08 56.6 1.9 63 133-198 234-307 (374)
145 TIGR00479 rumA 23S rRNA (uraci 96.6 0.0011 2.4E-08 57.4 2.1 72 123-198 284-369 (431)
146 PRK05134 bifunctional 3-demeth 96.6 0.0043 9.3E-08 49.0 5.3 64 132-198 48-121 (233)
147 PF01564 Spermine_synth: Sperm 96.5 0.0017 3.7E-08 52.1 2.3 66 131-197 75-156 (246)
148 PF12147 Methyltransf_20: Puta 96.4 0.0061 1.3E-07 49.8 5.1 67 131-198 134-216 (311)
149 PRK14904 16S rRNA methyltransf 96.4 0.0084 1.8E-07 52.3 6.0 67 130-197 248-324 (445)
150 PF00398 RrnaAD: Ribosomal RNA 96.3 0.01 2.2E-07 48.0 6.0 68 120-191 19-92 (262)
151 TIGR01983 UbiG ubiquinone bios 96.3 0.0054 1.2E-07 48.0 4.2 64 132-198 45-119 (224)
152 PF13489 Methyltransf_23: Meth 96.3 0.0082 1.8E-07 44.0 4.8 38 131-171 21-59 (161)
153 PRK11783 rlmL 23S rRNA m(2)G24 96.3 0.0031 6.7E-08 58.1 2.9 65 132-198 538-615 (702)
154 TIGR00095 RNA methyltransferas 96.2 0.0027 5.8E-08 49.0 2.0 53 133-187 50-110 (189)
155 PRK15128 23S rRNA m(5)C1962 me 96.2 0.004 8.6E-08 53.5 3.2 66 131-198 219-300 (396)
156 KOG1270 Methyltransferases [Co 96.2 0.0037 8.1E-08 50.2 2.7 61 134-197 91-164 (282)
157 PF05724 TPMT: Thiopurine S-me 96.2 0.012 2.5E-07 46.5 5.4 64 130-196 35-121 (218)
158 COG0030 KsgA Dimethyladenosine 96.1 0.021 4.6E-07 46.1 6.7 70 120-191 19-92 (259)
159 PF04816 DUF633: Family of unk 96.1 0.0041 8.9E-08 48.6 2.5 61 136-197 1-72 (205)
160 PRK01544 bifunctional N5-gluta 96.1 0.0081 1.7E-07 53.3 4.5 65 132-197 347-423 (506)
161 PRK11760 putative 23S rRNA C24 96.0 0.024 5.1E-07 47.6 6.5 63 131-196 210-275 (357)
162 PF09445 Methyltransf_15: RNA 95.9 0.0016 3.5E-08 48.9 -0.4 62 134-198 1-76 (163)
163 COG2227 UbiG 2-polyprenyl-3-me 95.9 0.0056 1.2E-07 48.6 2.5 39 134-175 61-100 (243)
164 PLN02476 O-methyltransferase 95.9 0.0067 1.4E-07 49.6 3.0 67 130-197 116-200 (278)
165 KOG0820 Ribosomal RNA adenine 95.9 0.036 7.8E-07 44.9 7.0 75 120-196 47-128 (315)
166 KOG1541 Predicted protein carb 95.9 0.0075 1.6E-07 47.4 2.9 55 132-190 50-107 (270)
167 PRK13256 thiopurine S-methyltr 95.8 0.027 5.8E-07 44.7 6.1 55 131-188 42-115 (226)
168 TIGR00563 rsmB ribosomal RNA s 95.7 0.017 3.6E-07 50.1 4.8 74 122-197 229-315 (426)
169 PF13679 Methyltransf_32: Meth 95.7 0.014 2.9E-07 42.7 3.6 57 130-187 23-93 (141)
170 PRK14901 16S rRNA methyltransf 95.7 0.022 4.7E-07 49.6 5.4 73 123-197 244-331 (434)
171 PF05148 Methyltransf_8: Hypot 95.7 0.024 5.3E-07 44.2 5.0 90 96-197 32-128 (219)
172 PF01596 Methyltransf_3: O-met 95.5 0.011 2.5E-07 46.1 2.8 68 130-198 43-128 (205)
173 PF01728 FtsJ: FtsJ-like methy 95.5 0.0067 1.4E-07 46.1 1.4 47 121-168 10-59 (181)
174 PF09339 HTH_IclR: IclR helix- 95.5 0.0044 9.6E-08 37.3 0.3 38 10-51 7-46 (52)
175 COG2519 GCD14 tRNA(1-methylade 95.4 0.063 1.4E-06 43.1 6.7 88 108-197 67-169 (256)
176 COG4976 Predicted methyltransf 95.4 0.022 4.8E-07 45.1 4.1 67 104-174 94-165 (287)
177 TIGR02143 trmA_only tRNA (urac 95.4 0.014 3E-07 49.4 3.2 51 134-187 199-256 (353)
178 PRK14903 16S rRNA methyltransf 95.2 0.037 8E-07 48.1 5.3 90 106-197 212-313 (431)
179 TIGR00446 nop2p NOL1/NOP2/sun 95.2 0.054 1.2E-06 43.9 5.9 67 130-197 69-146 (264)
180 PRK05031 tRNA (uracil-5-)-meth 95.2 0.019 4.2E-07 48.7 3.4 51 134-187 208-265 (362)
181 PF08003 Methyltransf_9: Prote 95.0 0.035 7.6E-07 45.8 4.3 33 130-165 114-146 (315)
182 PRK11783 rlmL 23S rRNA m(2)G24 95.0 0.058 1.3E-06 49.8 6.1 77 120-198 178-310 (702)
183 PRK10611 chemotaxis methyltran 94.9 1.1 2.4E-05 36.9 12.9 146 25-199 34-231 (287)
184 PF09243 Rsm22: Mitochondrial 94.9 0.046 1E-06 44.6 4.7 41 133-173 34-75 (274)
185 PF01170 UPF0020: Putative RNA 94.8 0.047 1E-06 41.7 4.4 75 122-197 19-112 (179)
186 PLN02589 caffeoyl-CoA O-methyl 94.8 0.02 4.3E-07 46.0 2.2 67 130-197 77-162 (247)
187 COG0293 FtsJ 23S rRNA methylas 94.7 0.11 2.4E-06 40.4 6.1 69 114-187 27-96 (205)
188 KOG3115 Methyltransferase-like 94.7 0.015 3.3E-07 45.1 1.3 31 134-165 62-92 (249)
189 PF10294 Methyltransf_16: Puta 94.5 0.043 9.2E-07 41.6 3.5 56 131-187 44-108 (173)
190 PRK04338 N(2),N(2)-dimethylgua 94.3 0.045 9.8E-07 46.8 3.5 63 134-197 59-131 (382)
191 PF01795 Methyltransf_5: MraW 94.3 0.078 1.7E-06 44.0 4.7 66 120-187 9-80 (310)
192 COG1352 CheR Methylase of chem 94.2 1.6 3.5E-05 35.5 12.1 135 40-199 28-210 (268)
193 PF02475 Met_10: Met-10+ like- 94.1 0.045 9.9E-07 42.6 2.8 68 130-198 99-176 (200)
194 PF06080 DUF938: Protein of un 93.9 0.081 1.8E-06 41.2 3.9 35 130-165 22-57 (204)
195 PF01739 CheR: CheR methyltran 93.9 0.19 4E-06 39.0 5.9 67 132-199 31-144 (196)
196 PF01022 HTH_5: Bacterial regu 93.9 0.025 5.4E-07 33.2 0.8 40 8-51 4-43 (47)
197 TIGR00006 S-adenosyl-methyltra 93.8 0.15 3.3E-06 42.3 5.4 65 121-187 10-80 (305)
198 KOG2361 Predicted methyltransf 93.6 0.093 2E-06 41.8 3.7 53 134-187 73-133 (264)
199 smart00550 Zalpha Z-DNA-bindin 93.6 0.053 1.2E-06 34.5 2.0 43 5-51 5-50 (68)
200 KOG3010 Methyltransferase [Gen 93.4 0.081 1.8E-06 42.2 3.1 44 131-177 32-76 (261)
201 KOG3191 Predicted N6-DNA-methy 93.0 0.14 3.1E-06 39.1 3.8 65 133-198 44-117 (209)
202 PF08704 GCD14: tRNA methyltra 92.9 0.34 7.4E-06 38.9 6.1 89 107-197 12-119 (247)
203 KOG3045 Predicted RNA methylas 92.7 0.41 8.8E-06 38.8 6.1 86 97-196 141-233 (325)
204 PF09012 FeoC: FeoC like trans 92.7 0.026 5.7E-07 36.0 -0.4 37 11-51 5-42 (69)
205 PF07757 AdoMet_MTase: Predict 92.6 0.14 3E-06 35.7 3.0 39 123-165 50-88 (112)
206 COG3963 Phospholipid N-methylt 92.5 0.24 5.1E-06 37.5 4.4 69 117-187 34-105 (194)
207 KOG1661 Protein-L-isoaspartate 92.5 0.24 5.2E-06 38.8 4.5 67 130-197 80-168 (237)
208 COG2384 Predicted SAM-dependen 92.4 0.19 4.1E-06 39.6 3.8 63 134-197 18-91 (226)
209 KOG4589 Cell division protein 91.7 0.25 5.5E-06 38.0 3.7 45 122-167 59-104 (232)
210 COG4122 Predicted O-methyltran 91.6 0.24 5.3E-06 39.0 3.8 68 130-198 57-139 (219)
211 smart00346 HTH_ICLR helix_turn 91.2 0.14 3E-06 34.0 1.8 39 9-51 8-48 (91)
212 COG0275 Predicted S-adenosylme 91.1 0.55 1.2E-05 38.8 5.3 66 121-187 13-84 (314)
213 COG5459 Predicted rRNA methyla 90.6 0.11 2.4E-06 43.7 1.0 67 130-197 112-188 (484)
214 COG3897 Predicted methyltransf 90.3 0.72 1.6E-05 35.8 5.0 67 130-198 77-149 (218)
215 PF12840 HTH_20: Helix-turn-he 89.9 0.12 2.6E-06 32.0 0.5 41 7-51 11-52 (61)
216 COG4076 Predicted RNA methylas 89.9 0.63 1.4E-05 36.0 4.4 60 134-196 34-101 (252)
217 PF13412 HTH_24: Winged helix- 89.9 0.13 2.7E-06 30.1 0.6 39 9-51 6-45 (48)
218 COG0357 GidB Predicted S-adeno 89.8 0.42 9.2E-06 37.6 3.6 32 133-165 68-99 (215)
219 KOG2730 Methylase [General fun 89.8 0.17 3.6E-06 39.9 1.3 53 132-187 94-154 (263)
220 PF01978 TrmB: Sugar-specific 89.7 0.16 3.4E-06 32.1 0.9 38 10-51 12-50 (68)
221 PF04703 FaeA: FaeA-like prote 89.5 0.22 4.9E-06 31.1 1.5 31 17-51 13-43 (62)
222 PF02527 GidB: rRNA small subu 89.3 0.56 1.2E-05 36.0 3.9 63 135-198 51-122 (184)
223 PF02082 Rrf2: Transcriptional 88.9 0.31 6.7E-06 32.1 1.9 30 18-51 24-53 (83)
224 COG3355 Predicted transcriptio 88.8 0.33 7.2E-06 34.8 2.1 40 8-51 29-70 (126)
225 PF04672 Methyltransf_19: S-ad 88.8 0.42 9.1E-06 38.8 3.0 57 131-188 67-133 (267)
226 smart00418 HTH_ARSR helix_turn 88.8 0.47 1E-05 28.7 2.6 35 13-51 4-38 (66)
227 PRK15090 DNA-binding transcrip 88.2 0.4 8.6E-06 38.6 2.5 38 10-51 18-56 (257)
228 PF03141 Methyltransf_29: Puta 88.0 0.42 9.1E-06 42.0 2.7 26 131-156 116-141 (506)
229 TIGR02431 pcaR_pcaU beta-ketoa 87.9 0.38 8.2E-06 38.5 2.2 39 9-51 12-52 (248)
230 smart00419 HTH_CRP helix_turn_ 87.7 0.61 1.3E-05 26.7 2.5 30 18-51 7-36 (48)
231 COG1414 IclR Transcriptional r 87.7 0.36 7.8E-06 38.7 2.0 39 9-51 7-47 (246)
232 PF04967 HTH_10: HTH DNA bindi 87.5 0.56 1.2E-05 28.4 2.2 26 4-31 10-35 (53)
233 PF07091 FmrO: Ribosomal RNA m 87.3 0.41 9E-06 38.4 2.0 65 132-197 105-177 (251)
234 PF02384 N6_Mtase: N-6 DNA Met 87.2 0.74 1.6E-05 37.9 3.7 68 130-198 44-132 (311)
235 PRK11569 transcriptional repre 87.1 0.41 8.9E-06 39.0 2.0 39 9-51 31-71 (274)
236 TIGR00308 TRM1 tRNA(guanine-26 87.0 0.42 9.2E-06 40.8 2.1 64 134-197 46-120 (374)
237 PRK10163 DNA-binding transcrip 86.4 0.49 1.1E-05 38.5 2.1 39 9-51 28-68 (271)
238 PRK15431 ferrous iron transpor 86.2 0.51 1.1E-05 30.9 1.7 37 11-51 7-44 (78)
239 COG0116 Predicted N6-adenine-s 85.9 2.1 4.6E-05 36.6 5.7 77 121-198 181-306 (381)
240 TIGR00122 birA_repr_reg BirA b 85.9 0.59 1.3E-05 29.5 1.9 39 9-51 3-41 (69)
241 PF02796 HTH_7: Helix-turn-hel 85.0 0.27 5.9E-06 28.4 0.0 30 11-45 14-43 (45)
242 PF06163 DUF977: Bacterial pro 85.0 0.29 6.4E-06 34.9 0.2 44 4-51 10-54 (127)
243 cd00092 HTH_CRP helix_turn_hel 84.8 1.2 2.5E-05 27.5 2.9 32 16-51 22-53 (67)
244 PF08220 HTH_DeoR: DeoR-like h 84.7 0.54 1.2E-05 28.7 1.3 37 11-51 5-42 (57)
245 PF00325 Crp: Bacterial regula 84.7 0.7 1.5E-05 24.8 1.5 29 19-51 2-30 (32)
246 KOG2187 tRNA uracil-5-methyltr 84.4 0.89 1.9E-05 40.1 2.8 56 130-187 381-445 (534)
247 KOG3924 Putative protein methy 84.3 0.96 2.1E-05 38.7 2.9 76 122-199 183-280 (419)
248 PF05219 DREV: DREV methyltran 84.3 1.2 2.7E-05 35.9 3.4 29 132-161 94-122 (265)
249 smart00344 HTH_ASNC helix_turn 84.2 0.6 1.3E-05 32.1 1.4 41 7-51 4-45 (108)
250 TIGR00373 conserved hypothetic 83.1 1.1 2.3E-05 33.6 2.5 38 10-51 18-56 (158)
251 PRK06266 transcription initiat 83.1 0.8 1.7E-05 35.0 1.8 37 11-51 27-64 (178)
252 PF03602 Cons_hypoth95: Conser 83.0 0.51 1.1E-05 36.1 0.7 62 134-197 44-120 (183)
253 cd00090 HTH_ARSR Arsenical Res 83.0 1.1 2.3E-05 27.9 2.2 39 9-51 10-48 (78)
254 TIGR00738 rrf2_super rrf2 fami 82.5 1.4 3.1E-05 31.4 2.9 30 18-51 24-53 (132)
255 KOG4058 Uncharacterized conser 82.1 1.3 2.8E-05 33.0 2.5 63 122-187 63-133 (199)
256 KOG1709 Guanidinoacetate methy 82.0 2.9 6.3E-05 33.1 4.5 69 114-185 85-158 (271)
257 TIGR02010 IscR iron-sulfur clu 81.9 1.5 3.3E-05 31.6 2.9 30 18-51 24-53 (135)
258 PF04989 CmcI: Cephalosporin h 81.7 2.3 5E-05 33.2 4.0 55 132-187 32-96 (206)
259 PF08279 HTH_11: HTH domain; 80.9 1.5 3.2E-05 26.2 2.1 36 12-51 6-43 (55)
260 COG2345 Predicted transcriptio 80.9 1.5 3.2E-05 34.6 2.6 37 11-51 16-53 (218)
261 PRK09834 DNA-binding transcrip 80.8 1.1 2.4E-05 36.2 2.0 39 9-51 14-54 (263)
262 PHA02943 hypothetical protein; 80.8 1.3 2.9E-05 32.7 2.2 37 11-51 16-52 (165)
263 TIGR02944 suf_reg_Xantho FeS a 80.7 1.8 3.8E-05 30.9 2.8 31 17-51 23-53 (130)
264 PRK10857 DNA-binding transcrip 80.3 1.7 3.8E-05 32.6 2.8 30 18-51 24-53 (164)
265 PF04072 LCM: Leucine carboxyl 80.3 0.99 2.1E-05 34.3 1.5 56 131-187 77-141 (183)
266 PRK10141 DNA-binding transcrip 79.4 3.3 7.1E-05 29.4 3.8 41 7-51 17-58 (117)
267 COG4190 Predicted transcriptio 79.2 1.4 3.1E-05 31.7 1.9 37 11-51 69-106 (144)
268 PF11312 DUF3115: Protein of u 79.1 6.5 0.00014 32.7 5.9 32 134-166 88-139 (315)
269 KOG1562 Spermidine synthase [A 79.0 1 2.3E-05 37.1 1.3 67 130-197 119-201 (337)
270 TIGR02987 met_A_Alw26 type II 78.7 1.8 3.9E-05 38.6 2.8 54 132-186 31-99 (524)
271 PF14314 Methyltrans_Mon: Viru 78.5 4.6 0.0001 37.1 5.3 58 100-160 292-349 (675)
272 PF13463 HTH_27: Winged helix 78.4 1.3 2.8E-05 27.5 1.4 36 12-51 9-46 (68)
273 smart00420 HTH_DEOR helix_turn 78.3 3 6.5E-05 24.0 2.9 31 17-51 12-42 (53)
274 PF12802 MarR_2: MarR family; 78.1 1.5 3.2E-05 26.7 1.5 28 20-51 22-49 (62)
275 smart00347 HTH_MARR helix_turn 78.1 1.8 3.9E-05 28.7 2.1 40 8-51 12-52 (101)
276 PF01047 MarR: MarR family; I 76.9 1.6 3.5E-05 26.3 1.4 37 11-51 8-45 (59)
277 PF05891 Methyltransf_PK: AdoM 76.5 2.8 6E-05 33.0 3.0 66 132-199 55-130 (218)
278 PF03291 Pox_MCEL: mRNA cappin 76.5 2.8 6.1E-05 35.2 3.2 54 132-187 62-132 (331)
279 COG2265 TrmA SAM-dependent met 76.3 2.1 4.6E-05 37.3 2.5 65 130-197 291-368 (432)
280 PRK10742 putative methyltransf 76.2 4.5 9.7E-05 32.6 4.1 73 121-197 76-170 (250)
281 PF05206 TRM13: Methyltransfer 76.1 4.7 0.0001 32.7 4.3 37 129-166 15-56 (259)
282 PF01726 LexA_DNA_bind: LexA D 76.0 0.88 1.9E-05 28.7 0.1 48 1-51 1-54 (65)
283 COG1959 Predicted transcriptio 73.1 2.9 6.3E-05 30.9 2.2 30 18-51 24-53 (150)
284 TIGR02337 HpaR homoprotocatech 73.0 2.8 6E-05 29.3 2.0 38 10-51 32-70 (118)
285 PF03514 GRAS: GRAS domain fam 73.0 3.7 7.9E-05 35.1 3.1 46 120-167 99-151 (374)
286 COG1565 Uncharacterized conser 73.0 7.3 0.00016 33.1 4.7 49 101-154 51-99 (370)
287 KOG0822 Protein kinase inhibit 72.9 13 0.00028 33.4 6.3 94 95-196 335-444 (649)
288 COG1510 Predicted transcriptio 72.7 5.9 0.00013 30.0 3.7 34 14-51 36-69 (177)
289 COG4565 CitB Response regulato 72.6 3.6 7.8E-05 32.3 2.7 31 17-51 171-201 (224)
290 PF12324 HTH_15: Helix-turn-he 72.6 2 4.3E-05 28.0 1.1 33 11-47 29-62 (77)
291 TIGR02702 SufR_cyano iron-sulf 72.1 2.3 5.1E-05 32.9 1.6 37 11-51 6-43 (203)
292 PRK11169 leucine-responsive tr 72.1 3.2 7E-05 31.0 2.3 41 7-51 15-56 (164)
293 TIGR01321 TrpR trp operon repr 72.1 2.2 4.7E-05 29.0 1.2 39 6-48 42-80 (94)
294 PRK11179 DNA-binding transcrip 72.0 2.6 5.7E-05 31.1 1.8 41 7-51 10-51 (153)
295 PRK11920 rirA iron-responsive 71.5 4.3 9.3E-05 30.1 2.8 31 17-51 22-52 (153)
296 smart00345 HTH_GNTR helix_turn 71.1 4.5 9.8E-05 24.0 2.4 29 19-51 19-48 (60)
297 COG2521 Predicted archaeal met 71.0 5.6 0.00012 31.9 3.4 65 131-196 133-210 (287)
298 PF13518 HTH_28: Helix-turn-he 70.9 3.7 8E-05 23.9 2.0 30 17-51 11-40 (52)
299 PRK01381 Trp operon repressor; 70.8 2.4 5.3E-05 29.0 1.2 39 6-48 42-80 (99)
300 COG1088 RfbB dTDP-D-glucose 4, 70.4 8.8 0.00019 31.9 4.5 48 139-187 5-62 (340)
301 PF13730 HTH_36: Helix-turn-he 70.4 4.6 0.0001 23.9 2.3 27 21-51 27-53 (55)
302 PF02636 Methyltransf_28: Puta 70.3 4.2 9.2E-05 32.5 2.8 33 133-166 19-59 (252)
303 cd07153 Fur_like Ferric uptake 69.2 3.7 8.1E-05 28.4 2.0 38 10-51 5-49 (116)
304 COG1522 Lrp Transcriptional re 68.2 3.8 8.2E-05 29.9 1.9 43 5-51 7-50 (154)
305 KOG2915 tRNA(1-methyladenosine 68.1 29 0.00063 28.6 7.0 90 106-197 76-183 (314)
306 PRK11512 DNA-binding transcrip 67.9 4.1 8.9E-05 29.6 2.0 38 10-51 44-82 (144)
307 PRK09273 hypothetical protein; 67.7 4.4 9.5E-05 31.7 2.2 40 135-175 65-104 (211)
308 PF13404 HTH_AsnC-type: AsnC-t 67.6 2.2 4.8E-05 24.3 0.4 27 8-36 5-32 (42)
309 PF07789 DUF1627: Protein of u 67.0 7.6 0.00016 28.6 3.2 31 17-51 4-34 (155)
310 PRK11014 transcriptional repre 66.9 6.2 0.00013 28.6 2.8 30 18-51 24-53 (141)
311 PF00165 HTH_AraC: Bacterial r 66.9 4.8 0.0001 22.5 1.8 27 18-48 7-33 (42)
312 TIGR01610 phage_O_Nterm phage 66.8 7 0.00015 26.4 2.9 30 18-51 46-75 (95)
313 PF01861 DUF43: Protein of unk 66.5 6.6 0.00014 31.5 3.1 72 122-197 36-118 (243)
314 TIGR03439 methyl_EasF probable 66.2 20 0.00042 30.1 5.9 63 121-187 68-143 (319)
315 PLN02668 indole-3-acetate carb 66.2 8.8 0.00019 33.0 3.9 34 132-166 63-111 (386)
316 PF12793 SgrR_N: Sugar transpo 66.0 6 0.00013 27.9 2.5 30 18-51 18-47 (115)
317 PF01325 Fe_dep_repress: Iron 65.5 6.4 0.00014 24.2 2.3 31 17-51 20-50 (60)
318 PF13545 HTH_Crp_2: Crp-like h 64.6 5.3 0.00012 25.2 1.9 30 18-51 27-56 (76)
319 PF05958 tRNA_U5-meth_tr: tRNA 63.8 2.2 4.8E-05 36.1 -0.1 58 122-184 188-252 (352)
320 PF13578 Methyltransf_24: Meth 63.4 4.8 0.0001 27.3 1.6 61 137-197 1-75 (106)
321 PF02502 LacAB_rpiB: Ribose/Ga 62.9 7.9 0.00017 28.3 2.7 47 139-186 62-110 (140)
322 PF02319 E2F_TDP: E2F/DP famil 62.8 2.7 5.8E-05 26.9 0.2 39 11-51 16-57 (71)
323 PF00356 LacI: Bacterial regul 62.5 4.8 0.0001 23.4 1.2 20 21-44 1-20 (46)
324 PF11968 DUF3321: Putative met 62.1 9.4 0.0002 30.1 3.1 53 134-198 53-111 (219)
325 TIGR00027 mthyl_TIGR00027 meth 62.0 9 0.00019 31.0 3.1 54 131-187 80-143 (260)
326 TIGR01889 Staph_reg_Sar staphy 61.8 11 0.00023 26.0 3.1 30 18-51 42-71 (109)
327 PF13601 HTH_34: Winged helix 61.7 1.6 3.5E-05 28.6 -1.0 41 7-51 1-42 (80)
328 PF10771 DUF2582: Protein of u 61.4 7.2 0.00016 24.6 1.9 37 11-51 13-50 (65)
329 TIGR01884 cas_HTH CRISPR locus 61.4 6.1 0.00013 30.6 2.0 39 9-51 146-185 (203)
330 TIGR01120 rpiB ribose 5-phosph 61.2 7.6 0.00016 28.5 2.3 46 139-185 62-109 (143)
331 PF02002 TFIIE_alpha: TFIIE al 61.1 2 4.4E-05 29.5 -0.6 37 11-51 18-55 (105)
332 KOG2793 Putative N2,N2-dimethy 61.1 10 0.00023 30.5 3.3 42 130-173 83-125 (248)
333 PF03059 NAS: Nicotianamine sy 60.6 7.6 0.00016 31.8 2.5 66 132-198 120-199 (276)
334 PF06406 StbA: StbA protein; 60.4 15 0.00033 30.5 4.4 63 106-169 246-310 (318)
335 PRK03902 manganese transport t 59.9 13 0.00028 26.9 3.4 31 17-51 20-50 (142)
336 TIGR00689 rpiB_lacA_lacB sugar 59.6 8.3 0.00018 28.4 2.3 47 139-186 61-109 (144)
337 PRK05571 ribose-5-phosphate is 59.5 8.5 0.00018 28.5 2.4 47 139-186 64-112 (148)
338 COG4367 Uncharacterized protei 59.5 8 0.00017 25.8 2.0 27 17-47 21-47 (97)
339 PRK11050 manganese transport r 59.2 8.3 0.00018 28.5 2.3 31 17-51 49-79 (152)
340 PRK09334 30S ribosomal protein 58.8 9.4 0.0002 25.5 2.2 30 18-51 40-69 (86)
341 PRK10046 dpiA two-component re 58.7 7.4 0.00016 30.2 2.1 36 12-51 168-205 (225)
342 KOG2940 Predicted methyltransf 57.6 8 0.00017 31.0 2.0 41 131-173 71-112 (325)
343 smart00342 HTH_ARAC helix_turn 57.6 11 0.00023 23.7 2.5 26 19-48 1-26 (84)
344 PRK12423 LexA repressor; Provi 57.3 6.2 0.00014 30.5 1.4 48 1-51 1-54 (202)
345 PF08221 HTH_9: RNA polymerase 56.9 2.8 6.1E-05 26.0 -0.5 36 11-50 18-54 (62)
346 smart00531 TFIIE Transcription 56.8 8 0.00017 28.4 1.9 37 9-49 4-41 (147)
347 PF03297 Ribosomal_S25: S25 ri 56.7 13 0.00027 25.9 2.7 30 18-51 58-87 (105)
348 TIGR00498 lexA SOS regulatory 56.4 11 0.00024 28.8 2.7 45 3-51 3-54 (199)
349 cd07377 WHTH_GntR Winged helix 56.3 12 0.00027 22.5 2.4 28 20-51 26-53 (66)
350 COG1378 Predicted transcriptio 56.3 15 0.00033 29.5 3.5 31 17-51 28-58 (247)
351 PF13542 HTH_Tnp_ISL3: Helix-t 55.5 8.4 0.00018 22.4 1.5 31 11-46 20-50 (52)
352 PRK13509 transcriptional repre 55.4 7.6 0.00017 31.2 1.7 37 11-51 10-47 (251)
353 PF14947 HTH_45: Winged helix- 55.3 6.5 0.00014 25.4 1.1 37 11-51 11-47 (77)
354 TIGR02844 spore_III_D sporulat 55.3 5.6 0.00012 26.2 0.7 30 11-44 11-40 (80)
355 COG0248 GppA Exopolyphosphatas 54.8 9.9 0.00022 33.8 2.4 25 121-146 119-143 (492)
356 TIGR01764 excise DNA binding d 54.8 10 0.00023 21.3 1.8 21 20-44 2-22 (49)
357 PRK13239 alkylmercury lyase; P 54.6 7.4 0.00016 30.4 1.4 39 6-48 22-61 (206)
358 PRK03573 transcriptional regul 54.4 19 0.00041 25.9 3.6 30 18-51 45-74 (144)
359 TIGR03329 Phn_aa_oxid putative 53.9 14 0.0003 32.3 3.2 34 134-168 25-60 (460)
360 KOG2651 rRNA adenine N-6-methy 53.7 11 0.00024 32.4 2.4 38 130-169 151-188 (476)
361 PHA00738 putative HTH transcri 53.3 8.9 0.00019 26.7 1.5 41 7-51 13-54 (108)
362 PHA02591 hypothetical protein; 52.9 6.5 0.00014 25.7 0.7 29 13-45 53-81 (83)
363 PF08784 RPA_C: Replication pr 52.4 10 0.00022 25.8 1.7 38 10-51 51-93 (102)
364 PF04539 Sigma70_r3: Sigma-70 52.4 9 0.00019 24.4 1.4 27 18-48 19-45 (78)
365 PF13384 HTH_23: Homeodomain-l 52.3 8.2 0.00018 22.3 1.1 36 11-51 10-45 (50)
366 KOG1331 Predicted methyltransf 51.6 12 0.00026 30.7 2.2 55 132-191 45-101 (293)
367 PF13443 HTH_26: Cro/C1-type H 51.2 3.4 7.4E-05 25.2 -0.8 29 13-45 4-32 (63)
368 TIGR03879 near_KaiC_dom probab 51.2 12 0.00025 24.2 1.7 28 18-49 31-58 (73)
369 PRK12615 galactose-6-phosphate 51.1 14 0.00031 28.0 2.4 36 139-175 63-98 (171)
370 TIGR03826 YvyF flagellar opero 51.1 7.8 0.00017 28.3 1.0 32 11-46 35-69 (137)
371 cd04762 HTH_MerR-trunc Helix-T 51.0 13 0.00028 20.7 1.8 22 20-45 1-22 (49)
372 PF04545 Sigma70_r4: Sigma-70, 50.8 15 0.00033 21.2 2.1 25 17-45 18-42 (50)
373 COG1189 Predicted rRNA methyla 50.7 25 0.00054 28.2 3.8 33 121-153 68-100 (245)
374 TIGR01119 lacB galactose-6-pho 50.5 14 0.00031 28.0 2.3 36 139-175 63-98 (171)
375 PF05331 DUF742: Protein of un 50.5 19 0.00042 25.3 2.9 31 17-51 53-83 (114)
376 COG1064 AdhP Zn-dependent alco 50.2 14 0.0003 31.2 2.5 59 135-196 171-234 (339)
377 PF05971 Methyltransf_10: Prot 50.2 8.1 0.00018 32.0 1.1 54 133-188 103-170 (299)
378 PF13936 HTH_38: Helix-turn-he 50.0 6.3 0.00014 22.5 0.3 25 17-45 18-42 (44)
379 PF12728 HTH_17: Helix-turn-he 49.9 14 0.00029 21.5 1.8 21 20-44 2-22 (51)
380 PRK06719 precorrin-2 dehydroge 49.7 49 0.0011 24.5 5.1 60 134-197 14-76 (157)
381 COG0500 SmtA SAM-dependent met 49.6 23 0.00049 24.1 3.3 50 136-187 52-109 (257)
382 PF13551 HTH_29: Winged helix- 49.6 13 0.00028 25.2 1.9 35 13-51 6-40 (112)
383 PRK10870 transcriptional repre 49.5 22 0.00048 26.8 3.3 31 17-51 69-99 (176)
384 PF03444 HrcA_DNA-bdg: Winged 49.5 30 0.00064 22.7 3.4 31 17-51 21-51 (78)
385 COG4189 Predicted transcriptio 49.3 11 0.00024 30.1 1.7 43 5-51 22-65 (308)
386 PRK10906 DNA-binding transcrip 49.2 8.5 0.00019 30.9 1.1 37 11-51 10-47 (252)
387 PRK13917 plasmid segregation p 49.2 48 0.001 27.9 5.6 58 108-168 267-324 (344)
388 PF05584 Sulfolobus_pRN: Sulfo 49.0 17 0.00037 23.4 2.2 37 11-51 10-46 (72)
389 KOG2666 UDP-glucose/GDP-mannos 48.9 15 0.00033 30.9 2.5 32 134-166 2-35 (481)
390 COG1675 TFA1 Transcription ini 48.8 12 0.00027 28.5 1.8 37 11-51 23-60 (176)
391 PRK08622 galactose-6-phosphate 48.8 15 0.00033 27.8 2.3 36 139-175 63-98 (171)
392 COG0391 Uncharacterized conser 48.7 20 0.00043 30.1 3.1 28 131-158 5-35 (323)
393 PF01418 HTH_6: Helix-turn-hel 48.6 9.6 0.00021 24.5 1.0 32 18-56 33-64 (77)
394 PF12242 Eno-Rase_NADH_b: NAD( 48.5 30 0.00066 22.6 3.3 25 130-154 36-61 (78)
395 PF10078 DUF2316: Uncharacteri 48.4 12 0.00027 25.1 1.5 25 18-46 22-46 (89)
396 cd02190 epsilon_tubulin The tu 48.4 34 0.00074 29.3 4.6 38 121-158 90-132 (379)
397 PRK09775 putative DNA-binding 48.2 12 0.00027 32.7 2.0 33 11-47 5-37 (442)
398 PTZ00215 ribose 5-phosphate is 48.1 16 0.00036 27.0 2.3 46 139-185 67-114 (151)
399 KOG2918 Carboxymethyl transfer 48.1 20 0.00043 30.0 3.0 41 130-171 85-127 (335)
400 PF04760 IF2_N: Translation in 48.1 8.1 0.00018 23.0 0.6 26 19-51 3-29 (54)
401 TIGR01826 CofD_related conserv 47.9 17 0.00036 30.4 2.6 29 136-165 1-33 (310)
402 PF12692 Methyltransf_17: S-ad 46.8 30 0.00064 25.8 3.4 31 134-165 30-60 (160)
403 PF10668 Phage_terminase: Phag 46.5 17 0.00036 22.6 1.8 23 17-43 20-42 (60)
404 PF08461 HTH_12: Ribonuclease 46.1 11 0.00024 23.6 1.0 40 12-51 4-46 (66)
405 KOG4300 Predicted methyltransf 45.9 21 0.00046 28.2 2.7 87 107-196 52-150 (252)
406 cd06059 Tubulin The tubulin su 45.6 42 0.0009 28.7 4.8 38 121-158 80-122 (382)
407 KOG3851 Sulfide:quinone oxidor 45.6 31 0.00066 29.3 3.7 33 131-164 37-71 (446)
408 PF10672 Methyltrans_SAM: S-ad 45.5 12 0.00025 30.9 1.3 72 121-197 115-201 (286)
409 TIGR03697 NtcA_cyano global ni 44.9 21 0.00045 26.7 2.6 30 18-51 142-171 (193)
410 KOG1098 Putative SAM-dependent 44.9 30 0.00065 31.8 3.8 45 122-166 34-78 (780)
411 PF04218 CENP-B_N: CENP-B N-te 44.8 15 0.00033 21.9 1.5 31 10-45 14-44 (53)
412 PRK04214 rbn ribonuclease BN/u 44.7 24 0.00052 30.5 3.2 31 17-51 308-338 (412)
413 PRK10219 DNA-binding transcrip 44.7 24 0.00052 23.9 2.7 27 18-48 20-46 (107)
414 PRK13606 LPPG:FO 2-phospho-L-l 44.6 25 0.00053 29.3 3.1 24 135-158 2-29 (303)
415 COG0698 RpiB Ribose 5-phosphat 44.1 21 0.00046 26.4 2.4 38 137-175 62-99 (151)
416 PF10007 DUF2250: Uncharacteri 44.1 13 0.00028 25.1 1.1 39 9-51 10-49 (92)
417 cd00286 Tubulin_FtsZ Tubulin/F 44.0 46 0.001 27.6 4.7 38 121-158 80-122 (328)
418 PF14881 Tubulin_3: Tubulin do 44.0 29 0.00063 26.4 3.2 40 120-160 64-107 (180)
419 TIGR02787 codY_Gpos GTP-sensin 43.9 22 0.00049 28.5 2.6 37 11-51 188-226 (251)
420 PRK13918 CRP/FNR family transc 43.8 25 0.00053 26.6 2.9 30 18-51 148-177 (202)
421 COG4567 Response regulator con 43.8 50 0.0011 24.8 4.2 66 99-165 16-89 (182)
422 PF04445 SAM_MT: Putative SAM- 43.7 31 0.00067 27.6 3.4 73 121-197 63-157 (234)
423 PF00392 GntR: Bacterial regul 43.7 19 0.00042 22.0 1.9 30 18-51 22-52 (64)
424 PF14557 AphA_like: Putative A 43.5 9.1 0.0002 28.9 0.3 50 2-51 7-60 (175)
425 cd07187 YvcK_like family of mo 43.2 21 0.00045 29.8 2.4 29 136-165 1-33 (308)
426 cd06060 misato Human Misato sh 42.8 29 0.00064 30.9 3.5 39 120-158 141-183 (493)
427 COG1654 BirA Biotin operon rep 42.7 26 0.00057 22.9 2.4 39 9-51 9-47 (79)
428 PF07381 DUF1495: Winged helix 42.6 17 0.00037 24.4 1.6 38 7-51 10-50 (90)
429 PRK11511 DNA-binding transcrip 42.2 26 0.00057 24.8 2.6 30 18-51 24-53 (127)
430 KOG2920 Predicted methyltransf 42.2 18 0.0004 29.6 1.9 31 133-165 117-147 (282)
431 cd00006 PTS_IIA_man PTS_IIA, P 42.2 52 0.0011 23.0 4.1 51 123-173 50-101 (122)
432 PF11972 HTH_13: HTH DNA bindi 42.2 15 0.00032 22.3 1.1 34 11-48 4-38 (54)
433 cd07044 CofD_YvcK Family of Co 42.2 21 0.00046 29.7 2.4 29 136-165 1-33 (309)
434 cd04761 HTH_MerR-SF Helix-Turn 42.1 21 0.00046 20.2 1.8 15 20-36 1-15 (49)
435 PRK11753 DNA-binding transcrip 41.8 25 0.00054 26.7 2.6 29 19-51 168-196 (211)
436 TIGR01118 lacA galactose-6-pho 41.4 18 0.00039 26.5 1.6 44 141-185 63-108 (141)
437 TIGR03739 PRTRC_D PRTRC system 41.4 75 0.0016 26.3 5.6 37 131-168 272-308 (320)
438 PRK09802 DNA-binding transcrip 41.2 14 0.0003 30.0 1.1 38 10-51 21-59 (269)
439 PRK04172 pheS phenylalanyl-tRN 41.0 23 0.00049 31.5 2.5 43 5-51 5-48 (489)
440 PRK06474 hypothetical protein; 40.9 21 0.00046 27.1 2.1 41 7-51 12-55 (178)
441 TIGR02698 CopY_TcrY copper tra 40.8 72 0.0016 22.8 4.7 41 7-51 5-50 (130)
442 PRK04424 fatty acid biosynthes 40.8 12 0.00025 28.7 0.6 37 11-51 12-49 (185)
443 COG5023 Tubulin [Cytoskeleton] 40.5 34 0.00074 29.4 3.3 38 121-158 121-163 (443)
444 PF11994 DUF3489: Protein of u 40.4 40 0.00087 21.7 2.9 33 11-47 15-48 (72)
445 PF08280 HTH_Mga: M protein tr 40.4 5.6 0.00012 24.3 -1.0 37 7-47 6-43 (59)
446 smart00529 HTH_DTXR Helix-turn 40.3 35 0.00076 22.5 2.9 26 22-51 2-27 (96)
447 COG2520 Predicted methyltransf 39.7 28 0.0006 29.5 2.7 65 133-199 189-264 (341)
448 PRK13512 coenzyme A disulfide 39.7 36 0.00079 29.5 3.6 31 134-165 2-34 (438)
449 TIGR02531 yecD_yerC TrpR-relat 39.6 17 0.00036 24.4 1.1 32 11-47 43-74 (88)
450 KOG1663 O-methyltransferase [S 39.2 55 0.0012 26.1 4.1 59 130-188 71-137 (237)
451 PTZ00383 malate:quinone oxidor 39.0 31 0.00066 30.8 3.0 33 134-167 46-80 (497)
452 PF01638 HxlR: HxlR-like helix 38.7 18 0.00039 23.9 1.2 37 11-51 10-47 (90)
453 PRK10411 DNA-binding transcrip 38.6 19 0.00042 28.7 1.6 38 10-51 8-46 (240)
454 KOG3987 Uncharacterized conser 38.5 6.6 0.00014 31.0 -1.1 28 130-157 109-137 (288)
455 KOG1501 Arginine N-methyltrans 38.3 31 0.00067 30.5 2.8 31 132-164 66-96 (636)
456 cd02188 gamma_tubulin Gamma-tu 38.1 43 0.00092 29.3 3.7 38 121-158 121-163 (431)
457 PF03374 ANT: Phage antirepres 37.8 34 0.00073 23.4 2.5 31 11-45 14-46 (111)
458 PRK12613 galactose-6-phosphate 37.7 22 0.00048 26.0 1.6 44 141-185 62-107 (141)
459 PF01381 HTH_3: Helix-turn-hel 37.6 20 0.00044 20.9 1.2 26 17-46 7-32 (55)
460 PHA00542 putative Cro-like pro 37.6 14 0.0003 24.2 0.5 28 14-45 26-53 (82)
461 PF02541 Ppx-GppA: Ppx/GppA ph 37.5 29 0.00064 28.1 2.5 13 131-143 111-123 (285)
462 PRK14165 winged helix-turn-hel 37.4 33 0.00071 27.1 2.6 30 18-51 20-49 (217)
463 COG4883 Uncharacterized protei 37.3 1.1E+02 0.0024 25.7 5.7 86 66-152 67-160 (500)
464 PTZ00387 epsilon tubulin; Prov 37.2 47 0.001 29.4 3.8 38 121-158 122-164 (465)
465 PRK11031 guanosine pentaphosph 37.0 26 0.00055 31.2 2.2 21 124-145 125-145 (496)
466 PHA01634 hypothetical protein 36.9 31 0.00068 25.1 2.2 21 133-153 29-49 (156)
467 PRK09391 fixK transcriptional 36.7 32 0.0007 26.9 2.6 30 18-51 178-207 (230)
468 PRK08621 galactose-6-phosphate 36.7 21 0.00046 26.2 1.4 44 141-185 63-108 (142)
469 PF00549 Ligase_CoA: CoA-ligas 36.6 51 0.0011 24.5 3.4 34 131-165 34-81 (153)
470 PRK11161 fumarate/nitrate redu 36.4 32 0.00069 26.7 2.5 30 18-51 183-212 (235)
471 COG1321 TroR Mn-dependent tran 36.3 51 0.0011 24.5 3.4 31 17-51 22-52 (154)
472 PRK14096 pgi glucose-6-phospha 36.2 43 0.00093 30.2 3.5 32 18-51 477-508 (528)
473 PF03610 EIIA-man: PTS system 36.0 22 0.00047 24.6 1.4 50 123-172 50-100 (116)
474 cd06171 Sigma70_r4 Sigma70, re 35.9 26 0.00055 19.6 1.5 25 18-46 25-49 (55)
475 PF07037 DUF1323: Putative tra 35.7 27 0.00058 24.8 1.7 23 20-46 1-23 (122)
476 PRK10434 srlR DNA-bindng trans 35.7 18 0.00039 29.1 1.0 38 10-51 9-47 (256)
477 TIGR02261 benz_CoA_red_D benzo 35.2 46 0.00099 27.1 3.2 23 130-152 95-142 (262)
478 cd07186 CofD_like LPPG:FO 2-ph 35.2 33 0.00071 28.5 2.4 23 136-158 1-27 (303)
479 PF03492 Methyltransf_7: SAM d 35.2 35 0.00077 28.7 2.7 66 130-196 14-112 (334)
480 PF04820 Trp_halogenase: Trypt 35.1 36 0.00079 29.8 2.8 31 135-166 1-34 (454)
481 COG3315 O-Methyltransferase in 35.0 14 0.00031 30.5 0.3 57 132-191 92-159 (297)
482 PF05050 Methyltransf_21: Meth 34.4 39 0.00084 24.3 2.5 30 138-168 1-35 (167)
483 PF08281 Sigma70_r4_2: Sigma-7 34.4 26 0.00057 20.4 1.4 23 18-44 25-47 (54)
484 KOG2782 Putative SAM dependent 34.3 42 0.00091 26.8 2.7 48 121-170 33-80 (303)
485 TIGR00635 ruvB Holliday juncti 34.2 49 0.0011 26.9 3.4 32 16-51 252-284 (305)
486 smart00354 HTH_LACI helix_turn 34.2 28 0.00061 21.8 1.5 20 21-44 2-21 (70)
487 TIGR03070 couple_hipB transcri 33.9 31 0.00067 20.0 1.6 23 18-44 14-36 (58)
488 PF14502 HTH_41: Helix-turn-he 33.8 71 0.0015 18.8 3.0 30 18-51 5-34 (48)
489 PF00376 MerR: MerR family reg 33.4 18 0.0004 19.9 0.5 11 21-31 1-11 (38)
490 PLN02206 UDP-glucuronate decar 33.4 94 0.002 27.2 5.1 62 133-196 119-188 (442)
491 PRK10854 exopolyphosphatase; P 33.3 30 0.00064 30.9 2.0 14 131-144 136-149 (513)
492 smart00422 HTH_MERR helix_turn 33.3 33 0.00072 21.0 1.8 20 21-44 2-21 (70)
493 PRK04217 hypothetical protein; 33.1 27 0.00058 24.4 1.4 31 11-45 50-80 (110)
494 PRK06847 hypothetical protein; 33.1 60 0.0013 27.0 3.8 32 133-165 4-35 (375)
495 PF04182 B-block_TFIIIC: B-blo 32.9 34 0.00074 21.9 1.8 39 9-51 5-46 (75)
496 COG1349 GlpR Transcriptional r 32.6 20 0.00043 28.8 0.8 37 11-51 10-47 (253)
497 smart00421 HTH_LUXR helix_turn 32.4 53 0.0011 18.7 2.5 30 11-45 11-40 (58)
498 COG4742 Predicted transcriptio 32.4 35 0.00076 27.7 2.1 41 7-51 14-54 (260)
499 PRK06475 salicylate hydroxylas 32.4 51 0.0011 28.0 3.3 32 134-166 3-34 (400)
500 KOG2530 Members of tubulin/Fts 32.3 66 0.0014 28.2 3.8 38 121-158 195-236 (483)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.97 E-value=3e-31 Score=212.01 Aligned_cols=144 Identities=30% Similarity=0.476 Sum_probs=130.6
Q ss_pred CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhH-HHHhhhCCCCC
Q 037818 53 LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFI-TSVLDGYNGFK 131 (199)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~ 131 (199)
.++..++.++.++..+++|.+|++++++|+ ++|...+|.++|+++.++|+..+.|+++|+..+.... +.+...++ |+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~ 99 (241)
T PF00891_consen 22 PSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FS 99 (241)
T ss_dssp THHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TT
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-cc
Confidence 456777777778899999999999999999 9999999988999999999999999999999988887 78889999 99
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+.++|||||||+|.++.+++++||+++ +|++|+|+|++.+++.+||++++||||+++|.+|+|+|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~ 166 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRH 166 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccceeeeh
Confidence 999999999999999999999999999 9999999999999989999999999999999999999986
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.96 E-value=1.8e-29 Score=205.89 Aligned_cols=194 Identities=38% Similarity=0.585 Sum_probs=171.5
Q ss_pred CcchhccccccccCCCCCCHHHHHHHcCCCCC-CCcchHHHHHHHHhhCC--------------------------CCCh
Q 037818 3 DNECREGGKKVRLANTPLSASQILTRILPSGD-GDAENLQRILRLLTSYG--------------------------GLSY 55 (199)
Q Consensus 3 ~~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~-~~~~~l~rlL~~l~~~g--------------------------~~~~ 55 (199)
..+|+|+||||.|.+++. +.|+|-.+-..+. .++..+.|+||.|++++ ..++
T Consensus 23 lk~A~eL~v~d~l~~~~~-p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~ 101 (342)
T KOG3178|consen 23 LKAACELGVFDILANAGS-PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSL 101 (342)
T ss_pred HHHHHHcChHHHHHhCCC-HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCch
Confidence 468999999999997444 7788876652112 22349999999999998 1456
Q ss_pred HHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcce
Q 037818 56 APYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQ 135 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~ 135 (199)
.+++...+++..++.|..|.++++.|+ .+|..++|...++|...++.....|+++|...+....+.+++.|.+|++...
T Consensus 102 a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~ 180 (342)
T KOG3178|consen 102 APLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNV 180 (342)
T ss_pred hHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCce
Confidence 778888788889999999999999999 7899999988999999999999999999999999888888888888999999
Q ss_pred EEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-CCceEEeCCCCCCCCcccEEEecC
Q 037818 136 LVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-LGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 136 vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+||||||.|..+..++..||+++ ++.||+|.+++.++.. +.|+.+.||||++.|.+|+|+|+|
T Consensus 181 avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkW 244 (342)
T KOG3178|consen 181 AVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKW 244 (342)
T ss_pred EEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEe
Confidence 99999999999999999999999 9999999999999988 999999999998899999999997
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.95 E-value=3.8e-28 Score=200.50 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=136.0
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----CCChH---------------------H
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----GLSYA---------------------P 57 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----~~~~~---------------------~ 57 (199)
++|+++||||.|.++|.|++|||+++|+ +++ .++||||+|+++| +..|+ +
T Consensus 8 ~aa~~Lglfd~L~~gp~t~~eLA~~~~~--~~~--~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~ 83 (306)
T TIGR02716 8 KAAIELDLFSHMAEGPKDLATLAADTGS--VPP--RLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTP 83 (306)
T ss_pred HHHHHcCcHHHHhcCCCCHHHHHHHcCC--ChH--HHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcCc
Confidence 5799999999999999999999999999 887 9999999999999 11110 1
Q ss_pred HHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHH-hccchhhHHHHhhhCCCCCCcceE
Q 037818 58 YMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM-SGVSVPFITSVLDGYNGFKGVKQL 136 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~~~~~~~~v 136 (199)
+..+. .......|.+|.+++|+ + ++|... +++....++... |...| +.......+.+++.++ +++..+|
T Consensus 84 ~~~~~-~~~~~~~~~~l~~~~r~-~-~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v 153 (306)
T TIGR02716 84 VAKAM-AFLADDFYMGLSQAVRG-Q-KNFKGQ-----VPYPPVTREDNL-YFEEIHRSNAKFAIQLLLEEAK-LDGVKKM 153 (306)
T ss_pred hHHHH-HHHHHHHHHhHHHHhcC-C-cccccc-----cCCCCCCHHHHH-hHHHHHHhcchhHHHHHHHHcC-CCCCCEE
Confidence 11111 11122568999999984 3 334321 222222333333 44444 3444455667888888 8888999
Q ss_pred EEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEecC
Q 037818 137 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMKW 199 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~~ 199 (199)
||||||+|.++..+++++|+++ ++++|+|++++.++++ +||+++.+|+|+ ++|.+|+|++++
T Consensus 154 lDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~ 223 (306)
T TIGR02716 154 IDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 223 (306)
T ss_pred EEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence 9999999999999999999999 9999999999988652 799999999996 677789998764
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.83 E-value=5.2e-09 Score=73.32 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=54.7
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCC-CC-CCCc-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDT-FK-SIPA-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~-f~-~~P~-aD~~~l~ 198 (199)
..+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++ .+||+++.+|+ +. +.+. .|++++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 36899999999999999999999999 999998 778877764 28999999999 43 3333 5998875
No 5
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.70 E-value=4.2e-08 Score=75.38 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=63.7
Q ss_pred HhccchhhHHH-HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeC
Q 037818 112 MSGVSVPFITS-VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGG 183 (199)
Q Consensus 112 m~~~~~~~~~~-~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~g 183 (199)
|...+...+.. ++..++ .....+|||||||+|.++..+++++|+.+ ++.+|. |..++.++++ ++++++.+
T Consensus 11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~ 88 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPG 88 (187)
T ss_pred CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEec
Confidence 33334433333 334555 66678999999999999999999999999 999998 7777777642 57999999
Q ss_pred CCCCCCCc-ccEEEec
Q 037818 184 DTFKSIPA-ADAIFMK 198 (199)
Q Consensus 184 d~f~~~P~-aD~~~l~ 198 (199)
|...+++. .|++++.
T Consensus 89 d~~~~~~~~~D~v~~~ 104 (187)
T PRK08287 89 EAPIELPGKADAIFIG 104 (187)
T ss_pred CchhhcCcCCCEEEEC
Confidence 98655555 4988864
No 6
>PRK06922 hypothetical protein; Provisional
Probab=98.66 E-value=4.6e-08 Score=87.20 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=77.0
Q ss_pred CCcccccccCchhHHHHHHHHhccchhh--HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-H
Q 037818 92 EPAYSYYGKMPEMNGLMRKAMSGVSVPF--ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-V 168 (199)
Q Consensus 92 ~~~~e~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v 168 (199)
..+|+++...++..++|...|....... .......++ |....+|||||||+|.++..+++.+|+.+ ++.+|+.+ .
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence 3568888888888888887775433321 122233455 66678999999999999999999999999 99999964 4
Q ss_pred HhcCCCC-----CCceEEeCCCCC-C--CCc--ccEEEec
Q 037818 169 VGEAPSI-----LGVTHIGGDTFK-S--IPA--ADAIFMK 198 (199)
Q Consensus 169 ~~~a~~~-----~ri~~~~gd~f~-~--~P~--aD~~~l~ 198 (199)
++.+++. .+++++.+|..+ + +|. .|+|+++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 7666542 468888899875 2 443 4999865
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.61 E-value=1.8e-07 Score=75.35 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=61.4
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEe
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
..+++.++ .....+|||||||+|.++..+++++|+.+ ++.+|. |..++.+++. +++++.+|+.+..|. .|+|++
T Consensus 19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence 45667776 66678999999999999999999999999 999998 7788887653 689999998753333 499987
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
+
T Consensus 96 ~ 96 (255)
T PRK14103 96 N 96 (255)
T ss_pred e
Confidence 5
No 8
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=73.34 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=65.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc--ccEE
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA--ADAI 195 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~--aD~~ 195 (199)
+..++...+ ......|+|+|||+|.....|+++||... .+.+|. |..++.|+.. +.++|..+|+-+..|+ .|++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456777787 88889999999999999999999999999 999996 8888888764 9999999999987775 4776
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
+-
T Consensus 97 fa 98 (257)
T COG4106 97 FA 98 (257)
T ss_pred hh
Confidence 53
No 9
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.52 E-value=2.7e-07 Score=72.02 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=57.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.+..+|||||||+|.++..+++..|..+ .+.+|. |+.++.|++ .+++++..+|+++++|. .|+++..
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEEC
Confidence 4557899999999999999999999999 999997 788898887 47899999999987665 3998864
No 10
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.52 E-value=4.8e-07 Score=72.85 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=63.2
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc--ccEE
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA--ADAI 195 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~--aD~~ 195 (199)
+..++..++ .....+|+|||||+|.++..+++.+|..+ ++.+|. |..++.+++. +++++..+|+.+..|. .|++
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 346677776 77778999999999999999999999999 999998 6778877764 7899999999763333 4988
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
+.+
T Consensus 98 ~~~ 100 (258)
T PRK01683 98 FAN 100 (258)
T ss_pred EEc
Confidence 764
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.45 E-value=2.7e-07 Score=68.49 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=54.2
Q ss_pred CcceEEEecCCccHHHHHHH-HHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-C--CCc-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-S--IPA-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~--~P~-aD~~~l~ 198 (199)
+..+|||+|||+|.++..++ +.+|..+ .+.+|. |+.++.++. .++++|..+|+++ + ++. .|+++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEc
Confidence 45799999999999999999 5689999 999997 788888875 2789999999998 3 333 5998864
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.45 E-value=1.8e-07 Score=70.95 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=55.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
...++||+|||+|.++..+++++|+.+ ++.+|. |..++.++++ +.++++.+|++++++. .|+++++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence 457999999999999999999999999 999997 6777777652 3499999999998774 3999874
No 13
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.43 E-value=4.7e-07 Score=76.80 Aligned_cols=76 Identities=12% Similarity=0.059 Sum_probs=59.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC---------CCceEEeCCCCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI---------LGVTHIGGDTFKSIP 190 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~---------~ri~~~~gd~f~~~P 190 (199)
+-+++.++ .....+|||+|||+|.++..+++++|..+ ++.+|.. ..++.++++ +++++..+|.++.++
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34556665 33336999999999999999999999999 9999984 667766642 378999999998664
Q ss_pred c--ccEEEec
Q 037818 191 A--ADAIFMK 198 (199)
Q Consensus 191 ~--aD~~~l~ 198 (199)
. .|+|+.+
T Consensus 296 ~~~fDlIlsN 305 (378)
T PRK15001 296 PFRFNAVLCN 305 (378)
T ss_pred CCCEEEEEEC
Confidence 4 4999874
No 14
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.43 E-value=3.9e-07 Score=72.69 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=55.4
Q ss_pred CCcceEEEecCCccHHHHHHHHH--CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~ 198 (199)
....+|||||||+|.++..++++ +|+.+ .+.+|+ |..++.+++. .+++++.+|+.+ ++|..|++++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence 45579999999999999999997 58899 999999 8888887642 479999999987 56667877653
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.42 E-value=6.2e-07 Score=70.96 Aligned_cols=75 Identities=12% Similarity=0.144 Sum_probs=58.7
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCc-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPA- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~- 191 (199)
.+++.++ .....+|||||||+|.++..+++.+ |+.+ ++.+|+ |..++.+++ .++++++.+|..+ ++|.
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3445555 5556899999999999999999986 6788 999998 677766653 2689999999986 5665
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|++++.
T Consensus 114 ~fD~V~~~ 121 (231)
T TIGR02752 114 SFDYVTIG 121 (231)
T ss_pred CccEEEEe
Confidence 3998864
No 16
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.41 E-value=1.8e-05 Score=64.16 Aligned_cols=154 Identities=12% Similarity=0.051 Sum_probs=91.0
Q ss_pred HHHHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccC
Q 037818 24 QILTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKM 101 (199)
Q Consensus 24 eLA~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~ 101 (199)
-|.+++|+..++.+ ...+|+-+.+...|-.++..++.....+.--.-|..|-+.+-.+. +-| -++
T Consensus 10 ~i~~~~Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~-T~F------------fR~ 76 (264)
T smart00138 10 LIYSRTGIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHRGEEELAELLDLMTTNE-TRF------------FRE 76 (264)
T ss_pred HHHHHhCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCC-Ccc------------cCC
Confidence 35567787333321 124455566666664455555544332211234677777776655 322 223
Q ss_pred chhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC-----CCCeeeeccc-hHHHhc
Q 037818 102 PEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVGE 171 (199)
Q Consensus 102 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P-----~l~~~~v~Dl-p~v~~~ 171 (199)
++.-+.+. ....+.+.+.-+ ....-+|+|+|||+|. +++.+++..| +.+ .+..|. |..++.
T Consensus 77 ~~~~~~l~-------~~vlp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~ 147 (264)
T smart00138 77 SKHFEALE-------EKVLPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEK 147 (264)
T ss_pred cHHHHHHH-------HHHhHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHH
Confidence 32222221 222344444333 3445799999999997 5677777766 467 899997 677877
Q ss_pred CCCC---------------------------------CCceEEeCCCCCC-CCc--ccEEEecC
Q 037818 172 APSI---------------------------------LGVTHIGGDTFKS-IPA--ADAIFMKW 199 (199)
Q Consensus 172 a~~~---------------------------------~ri~~~~gd~f~~-~P~--aD~~~l~~ 199 (199)
|++. .+|+|..+|+.++ .|. -|+|+.++
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn 211 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN 211 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence 7641 3799999999984 434 39998764
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.40 E-value=3.6e-07 Score=73.32 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=55.7
Q ss_pred CCcceEEEecCCccHHHHHHHH--HCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQ--KHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~--~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~ 198 (199)
....+|||||||+|..+..+++ .+|+.+ ++.+|. |..++.++++ .+|+++.+|+.+ +.+..|++++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 3557999999999999999988 479999 999998 8888888652 489999999986 55667887753
No 18
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.39 E-value=4.8e-07 Score=74.15 Aligned_cols=66 Identities=23% Similarity=0.196 Sum_probs=56.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
+..+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.|+++ +||+++.+|+++++|. .|+++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 346899999999999999999999999 999998 7888877753 5899999999987765 3998863
No 19
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.38 E-value=3.7e-07 Score=75.58 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=56.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.|+++ +||+++.+|+++.+|. .|+++.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 6899999999999999999999999 999998 8888887753 5799999999987764 4998864
No 20
>PRK04457 spermidine synthase; Provisional
Probab=98.36 E-value=5e-07 Score=73.18 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=56.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC---CCCcc-cEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK---SIPAA-DAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~---~~P~a-D~~~l 197 (199)
++.++|+|||||.|.++..+++.+|+.+ ++++|+ |++++.++++ +|++++.+|..+ ..|.. |+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 3557999999999999999999999999 999999 9999988742 789999999864 34443 99886
No 21
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.31 E-value=7.1e-08 Score=58.13 Aligned_cols=44 Identities=34% Similarity=0.366 Sum_probs=35.5
Q ss_pred CcchhccccccccCC---CCCCHHHHHHHcC-CCCCCC-cchHHHHHHHHh
Q 037818 3 DNECREGGKKVRLAN---TPLSASQILTRIL-PSGDGD-AENLQRILRLLT 48 (199)
Q Consensus 3 ~~~A~~lglf~~L~~---g~~t~~eLA~~~~-~~~~~~-~~~l~rlL~~l~ 48 (199)
-+.|+++||||.|.+ +++|++||+.++. . +|. +..+.|+||+|+
T Consensus 3 Lk~aveLgI~dii~~~g~~~ls~~eia~~l~~~--~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 3 LKCAVELGIPDIIHNAGGGPLSLSEIAARLPTS--NPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT---TTHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCC--CcchHHHHHHHHHHhC
Confidence 467999999999963 6999999999999 5 544 358999999985
No 22
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=7.5e-07 Score=72.83 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=54.7
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-ccEEEec
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
+|+|||+|+|..+..+++++|+++ ++..|+ |..++.|+++ .|+.++.+|+|++++. .|+++.+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeC
Confidence 899999999999999999999999 999997 8888888753 5677777799998775 5998764
No 23
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.28 E-value=1.1e-06 Score=72.03 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=55.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.++++ +|++++.+|+++++|. .|+++.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 6899999999999999999999999 999998 7788777753 4699999999987765 4988764
No 24
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.27 E-value=3.1e-06 Score=59.90 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=56.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCc-
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPA- 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~- 191 (199)
+.+.++ .....+|+|+|||+|.++..+++++|+.+ ++.+|. +..++.+++ .++++++.+|... ..+.
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 445555 55557999999999999999999999988 999998 566666553 2689999898763 2223
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 89 ~D~v~~~ 95 (124)
T TIGR02469 89 PDRVFIG 95 (124)
T ss_pred CCEEEEC
Confidence 4888764
No 25
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.27 E-value=2.3e-06 Score=69.41 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA-- 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~-- 191 (199)
...+++.++ .....+|||||||+|..+..+++.+ ..+ ++.+|+ |..++.+++ .++|+++.+|+.+ ++|.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 345667776 7777899999999999999998876 578 999998 566666654 3689999999986 6775
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+++..
T Consensus 118 FD~V~s~ 124 (263)
T PTZ00098 118 FDMIYSR 124 (263)
T ss_pred eEEEEEh
Confidence 3998863
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.24 E-value=2.8e-06 Score=67.62 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=57.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc--cEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
...+|||||||+|.++..+++..+..+ ++++|. +..++.+++. ..|+|+.||..+ |+|.. |+|.++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence 468999999999999999999999888 999997 6778887753 239999999998 99984 999876
No 27
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.21 E-value=2.9e-06 Score=65.79 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=56.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a 192 (199)
+.+++.++ .....+|||+|||+|..+..++++ ..+ ++.+|. |..++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 45666666 555589999999999999999986 457 899998 6667766542 568899999986 45543
Q ss_pred -cEEEec
Q 037818 193 -DAIFMK 198 (199)
Q Consensus 193 -D~~~l~ 198 (199)
|+|+..
T Consensus 96 fD~I~~~ 102 (197)
T PRK11207 96 YDFILST 102 (197)
T ss_pred cCEEEEe
Confidence 988754
No 28
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=5.8e-06 Score=67.47 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=60.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-a 192 (199)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+ .+.+|. ...++.++++ ++.++...|.|++.+. -
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45667776 44345999999999999999999999999 999997 5778888764 3446789999987666 4
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+|+++
T Consensus 226 d~IisN 231 (300)
T COG2813 226 DLIISN 231 (300)
T ss_pred cEEEeC
Confidence 888875
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=98.18 E-value=4.8e-06 Score=69.93 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=52.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCcc--cEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPAA--DAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~a--D~~~l 197 (199)
....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++ .++|+++.+|+.+ ++|.+ |+++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence 456799999999999999999988 678 999998 555665543 1689999999987 66653 98875
No 30
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.18 E-value=4.1e-06 Score=64.50 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=53.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
...+|+|||||+|..+..+++++|..+ ++.+|. |..++.++++ ++++++.+|..+ +.+. .|+++++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence 357999999999999999999999999 999998 6667666542 569999999876 2222 4999874
No 31
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=2.1e-06 Score=75.75 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=55.7
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..+++.+|+.+ ++.+|. |..++.|+++ +|++++.+|+++.++. .|+++.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence 46899999999999999999999999 999998 7788887753 5899999999987654 3988863
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.17 E-value=4.1e-06 Score=66.90 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=54.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
+..+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.++.+ ++++++.+|++++++. .|+++.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~ 160 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS 160 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence 346899999999999999999999999 999997 7777777642 5799999999987654 398875
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.17 E-value=5.2e-07 Score=61.88 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=42.2
Q ss_pred EEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 137 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
||||||+|.++..+++++|..+ .+.+|. |..++.+++. .++++...|.++..+. -|++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh
Confidence 7999999999999999999999 999997 7888888764 2456666666654442 4999875
No 34
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.17 E-value=3.9e-06 Score=67.61 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=53.8
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC--CCCc-
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK--SIPA- 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~--~~P~- 191 (199)
+++.++ .+..+|||||||+|.++..+++. ..+ ++.+|. |+.++.|++. ++++++.+|+.+ +.+.
T Consensus 37 ~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 37 LLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 444443 44579999999999999999987 356 889998 7888877642 578999999865 3433
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|++++.
T Consensus 112 ~fD~V~~~ 119 (255)
T PRK11036 112 PVDLILFH 119 (255)
T ss_pred CCCEEEeh
Confidence 4998864
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.17 E-value=2.9e-06 Score=66.75 Aligned_cols=63 Identities=21% Similarity=0.274 Sum_probs=50.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l 197 (199)
++|||||||+|.++..+++.+|+.+ ++.+|+ |..++.+++ .++++++.+|+.+ ++|. .|+++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeeh
Confidence 4799999999999999999999999 999998 455555553 2689999999975 4555 388874
No 36
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.15 E-value=2.6e-06 Score=65.26 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=51.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC------CCCceEEeCCCCCC-C-CcccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS------ILGVTHIGGDTFKS-I-PAADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~------~~ri~~~~gd~f~~-~-P~aD~~~l~ 198 (199)
..+|+|||||+|.++..+++.+|+.+ ++.+|.. ..++.+++ .++|+++.+|+.+- . +..|+++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEeh
Confidence 47999999999999999999999999 9999985 44544432 25799999999762 2 224988764
No 37
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.14 E-value=2.6e-06 Score=65.94 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=53.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---C-CCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---S-IPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~-~P~--aD~~~l~ 198 (199)
...++||||||+|.++..+++++|+.. ++.+|. +..++.+++ .++|+++.+|+.+ . +|. .|.+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 447999999999999999999999999 999998 666666653 2689999999974 1 444 3777764
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.14 E-value=6.6e-06 Score=64.66 Aligned_cols=64 Identities=16% Similarity=0.048 Sum_probs=49.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCcccEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPAADAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~aD~~~l 197 (199)
....+|||||||+|.++..+++. ..+ ++.+|. |+.++.+++. +++++..+|+.+.....|+++.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~ 125 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVC 125 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEE
Confidence 34589999999999999999886 346 889997 6777777642 4899999998763333488765
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.13 E-value=6.1e-06 Score=69.32 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=56.7
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcc-cE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAA-DA 194 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~a-D~ 194 (199)
.+++.++ -....+|+|+|||+|.++..+++++|+.+ ++.+|. +..++.++++ -..+++.+|.++..+.. |+
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3445454 22335899999999999999999999999 999998 5677766642 24577889998765554 99
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
++.+
T Consensus 265 IvsN 268 (342)
T PRK09489 265 IISN 268 (342)
T ss_pred EEEC
Confidence 8864
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.12 E-value=1.5e-05 Score=63.92 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccE
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADA 194 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~ 194 (199)
+..+++.++ .....+|||||||+|.++..+.+. ..+ ++.+|+ |..++.+++. ..+.++.+|+.+ ++|. .|+
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 344555555 445689999999999999888764 467 899998 7888888764 456788999876 5655 398
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
++.+
T Consensus 107 V~s~ 110 (251)
T PRK10258 107 AWSN 110 (251)
T ss_pred EEEC
Confidence 8753
No 41
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.12 E-value=8e-06 Score=71.50 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--c
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--a 192 (199)
.+++.++ .....+|||||||+|..+..+++.+ +.+ ++.+|+ |..++.|+++ .+++++.+|+++ ++|. .
T Consensus 257 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 257 EFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 3555555 5666899999999999999998876 778 999998 5666666532 589999999997 5665 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 334 D~I~s~ 339 (475)
T PLN02336 334 DVIYSR 339 (475)
T ss_pred EEEEEC
Confidence 998764
No 42
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.11 E-value=4.6e-06 Score=71.31 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=55.2
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CCc---ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IPA---ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P~---aD~~~l~ 198 (199)
..+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++ .|++++.+|++++ .|. .|+++.+
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence 35899999999999999999999999 999998 8888888753 4799999999874 442 3988864
No 43
>PRK08317 hypothetical protein; Provisional
Probab=98.10 E-value=9.9e-06 Score=63.79 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=57.6
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC-CCCc--c
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~-~~P~--a 192 (199)
+.+.++ .....+|||||||+|.++..+++.+ |..+ .+.+|. |..++.+++ ..++++..+|+.+ +++. .
T Consensus 11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 445555 6667899999999999999999998 7888 999998 455565543 2679999999875 5554 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 89 D~v~~~ 94 (241)
T PRK08317 89 DAVRSD 94 (241)
T ss_pred eEEEEe
Confidence 988764
No 44
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.09 E-value=8.5e-06 Score=62.09 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=58.9
Q ss_pred hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC---CCCcccE
Q 037818 125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK---SIPAADA 194 (199)
Q Consensus 125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~---~~P~aD~ 194 (199)
..+. .....+++|||||+|..+.+++..+|..+ ++-+|. ++.++..+++ ++++.+.||--+ .+|..|.
T Consensus 28 s~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 28 SKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 4554 66778999999999999999999999999 999996 6667666653 899999998775 3554599
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 106 iFIG 109 (187)
T COG2242 106 IFIG 109 (187)
T ss_pred EEEC
Confidence 8874
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.08 E-value=6.7e-06 Score=64.84 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=52.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..+++.+|+.+ ++.+|. |..++.+++. ++++++.+|+.+ ++|. .|+++..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~ 105 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSN 105 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEh
Confidence 37899999999999999999999999 999997 4555555543 589999999986 4444 3998864
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.07 E-value=1.6e-05 Score=62.81 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=56.7
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~ 191 (199)
.++..+. .....+|+|||||+|.++..+++.+| +.+ ++++|. |..++.+++. .++++..+|+.+ +.+.
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 3444444 44457999999999999999999998 788 999998 5566665542 579999999986 4443
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 120 ~~~D~I~~~ 128 (239)
T PRK00216 120 NSFDAVTIA 128 (239)
T ss_pred CCccEEEEe
Confidence 3988764
No 47
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.07 E-value=7.6e-06 Score=65.91 Aligned_cols=65 Identities=22% Similarity=0.189 Sum_probs=54.2
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCCCCC----c-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFKSIP----A-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~~~P----~-aD~~~l~ 198 (199)
..+++|+|||+|.++..+++..|..+ ++.+|. |..++.++++ .+++++.+|+++.++ . .|+++.+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEEC
Confidence 35899999999999999999999999 999998 8888888764 347899999987554 2 3888764
No 48
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.06 E-value=3.6e-06 Score=67.03 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=47.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc--cEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
.....+|||||||+|.++..+++.. |+.+ ++.+|. |..++.+++ ..+|+++.+|..+ |+|.. |++++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHH
Confidence 3455799999999999999999875 6788 999997 677888764 2689999999987 78873 999875
No 49
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.06 E-value=1.2e-05 Score=60.73 Aligned_cols=73 Identities=14% Similarity=0.253 Sum_probs=55.4
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----CCCceEEeCCCCC-CCCc--c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----ILGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----~~ri~~~~gd~f~-~~P~--a 192 (199)
..+++.++ +....+++|||||+|.++..++++ ..+ ++.+|.. ..++.+++ .++++++.+|+++ +.+. .
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 35666776 777789999999999999999998 457 8899974 45555543 3689999999997 4554 3
Q ss_pred cEEEe
Q 037818 193 DAIFM 197 (199)
Q Consensus 193 D~~~l 197 (199)
|.++.
T Consensus 79 d~vi~ 83 (169)
T smart00650 79 YKVVG 83 (169)
T ss_pred CEEEE
Confidence 76654
No 50
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.06 E-value=1.1e-05 Score=65.31 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
..+..+|+|+|||+|.++..+++..|..+ ++.+|. |..++.++++ .+++++.+|++++.+. .|+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence 34557999999999999999999999999 999997 5666666542 6899999999987653 498875
No 51
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.05 E-value=1.5e-05 Score=64.49 Aligned_cols=68 Identities=24% Similarity=0.213 Sum_probs=54.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC---------CCCceEEeCCCCC-CCCc--ccEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS---------ILGVTHIGGDTFK-SIPA--ADAI 195 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~---------~~ri~~~~gd~f~-~~P~--aD~~ 195 (199)
.....+|||||||+|.++..+++.+ |+.+ ++.+|. |+.++.|++ .++|+++.+|..+ |+|. .|++
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 4455799999999999999999875 6778 999998 666776643 2589999999986 6776 3998
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
++.
T Consensus 150 ~~~ 152 (261)
T PLN02233 150 TMG 152 (261)
T ss_pred EEe
Confidence 764
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.05 E-value=2.9e-06 Score=58.44 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=46.7
Q ss_pred EEEecCCccHHHHHHHHHC---CCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEe
Q 037818 136 LVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFM 197 (199)
Q Consensus 136 vvDvGGG~G~~~~~l~~~~---P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l 197 (199)
|||+|||+|...+.+++.+ |+.+ .+.+|+ |+.++.+++. .+++++.+|+.+ +++. .|+|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999997 6678 999996 6777777642 589999999976 3333 499886
No 53
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.05 E-value=1.7e-05 Score=62.20 Aligned_cols=76 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..+++.. ++.+ ++.+|. |..++.++++ ++|+++.+|.++..+.
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34556666 6777899999999999999888875 4467 888996 6777777652 6899999999875433
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
-|+|++.
T Consensus 144 ~~fD~I~~~ 152 (212)
T PRK13942 144 APYDRIYVT 152 (212)
T ss_pred CCcCEEEEC
Confidence 3998764
No 54
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.03 E-value=1.5e-05 Score=62.58 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..+++..+ +.+ ++.+|. |+.++.|+++ ++++++.+|..+..+.
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34556666 66678999999999999999999875 466 888885 7777777642 6899999999874332
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
-|++++.
T Consensus 145 ~~fD~Ii~~ 153 (215)
T TIGR00080 145 APYDRIYVT 153 (215)
T ss_pred CCCCEEEEc
Confidence 3988864
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.02 E-value=1.5e-05 Score=62.31 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=57.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--cc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--AD 193 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--aD 193 (199)
+++... .....+|+|+|||.|.++..+++.+|. .+ .+.+|. |..++.+++ .++++++.+|+.+ +.+. .|
T Consensus 31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 344444 445689999999999999999999998 77 999998 566666554 2689999999987 4544 38
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 109 ~i~~~ 113 (223)
T TIGR01934 109 AVTIA 113 (223)
T ss_pred EEEEe
Confidence 88753
No 56
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.01 E-value=1.6e-05 Score=66.64 Aligned_cols=66 Identities=24% Similarity=0.236 Sum_probs=54.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+++..|..+ ++++|. |..++.+++. .+++++.+|+.+ +++. .|+|++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEc
Confidence 346999999999999999999999888 999998 6777777653 689999999986 5655 3988764
No 57
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.01 E-value=1.2e-05 Score=68.26 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=55.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCC---CCCCcc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTF---KSIPAA 192 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f---~~~P~a 192 (199)
+++.+. -.....+||||||+|.++..+++++|+.. ++.+|. +..++.+.+ .++|.++.+|.. +.+|.+
T Consensus 114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 344443 23447999999999999999999999999 999997 455554432 268999999973 356653
Q ss_pred --cEEEec
Q 037818 193 --DAIFMK 198 (199)
Q Consensus 193 --D~~~l~ 198 (199)
|.+++.
T Consensus 192 s~D~I~ln 199 (390)
T PRK14121 192 SVEKIFVH 199 (390)
T ss_pred ceeEEEEe
Confidence 877764
No 58
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.00 E-value=8.9e-06 Score=54.53 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=47.7
Q ss_pred EEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCcc--cEEEec
Q 037818 137 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
||||||+|..+..++++ +..+ .+.+|. +..++.+++ ..++++..+|+.+ ++|.. |+++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccc
Confidence 79999999999999999 8888 999998 455666664 3667799999987 77763 998865
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.00 E-value=8.7e-06 Score=63.41 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=52.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC--C--CCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK--S--IPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~--~--~P~--aD~~~l 197 (199)
...+|||||||+|.++..+++.+|+.+ .+.+|. |+.++.+++ .++++++.+|+.+ + ++. .|++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 457999999999999999999999999 999998 667776653 2689999999932 2 443 387775
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.99 E-value=8.2e-06 Score=63.11 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=52.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
+...++ .....+|+|+|||+|.++..+++..|..+ ++.+|. |..++.++++ ++++++.+|..+
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 445555 55668999999999999999999999988 999998 8888877642 679999998864
No 61
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.98 E-value=1.4e-05 Score=64.98 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=52.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCC---Ceeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFI---CEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l 197 (199)
...+|||||||+|.++..+++.+|.. + ++.+|+ |..++.|++. +++++..+|..+ |++. .|+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE
Confidence 44789999999999999999998865 5 799997 6777777654 789999999887 6665 388863
No 62
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.97 E-value=2e-05 Score=63.68 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----CCCceEEeCCCCC-CCCcccE
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----ILGVTHIGGDTFK-SIPAADA 194 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----~~ri~~~~gd~f~-~~P~aD~ 194 (199)
..+++..+ .....+|+|||||+|.++..++++. .+ ++.+|.. ..++.+++ .++++++.+|+++ ++|..|.
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 45556665 5566899999999999999999984 46 8888874 45554443 3789999999997 6666676
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
++.
T Consensus 95 Vv~ 97 (258)
T PRK14896 95 VVS 97 (258)
T ss_pred EEE
Confidence 654
No 63
>PRK06202 hypothetical protein; Provisional
Probab=97.96 E-value=5.5e-05 Score=60.01 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=48.1
Q ss_pred CCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCC--CCCCCc-ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDT--FKSIPA-ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~--f~~~P~-aD~~~l~ 198 (199)
.+..+|+|||||+|.++..+++. .|+.+ .+.+|+ |..++.+++. .++++..+|. +...+. .|++++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 45679999999999999888764 56788 999998 7888887754 4566555433 222222 4998875
No 64
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.95 E-value=2.3e-05 Score=63.88 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=51.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIP 190 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P 190 (199)
..+++.++ .....+|+|||||+|.++..++++.+ + ++.+|. |..++.+++. ++++++.+|+.+ +++
T Consensus 32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence 34556666 66668999999999999999999987 6 778886 5666665542 689999999986 444
No 65
>PLN02366 spermidine synthase
Probab=97.93 E-value=1.3e-05 Score=66.28 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=51.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----------CCCceEEeCCCCC---CCCc--ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----------ILGVTHIGGDTFK---SIPA--ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----------~~ri~~~~gd~f~---~~P~--aD~ 194 (199)
.+.++||+||||.|..++++++. |...+++++|+. .|++.+++ .+|++++.+|.++ ..|. -|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 56789999999999999999865 765448999984 57887765 2699999999753 3443 399
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|++
T Consensus 169 Ii~ 171 (308)
T PLN02366 169 IIV 171 (308)
T ss_pred EEE
Confidence 886
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.93 E-value=3.2e-05 Score=60.30 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=55.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~- 191 (199)
.+++.++ .....+|||||||+|.++..+++..+ .-+ ++.+|. |+.++.++++ ++++++.+|..+.+|.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445554 45557999999999999999998875 456 899997 6666666542 4699999999875543
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 141 ~~fD~Ii~~ 149 (205)
T PRK13944 141 APFDAIIVT 149 (205)
T ss_pred CCccEEEEc
Confidence 3988764
No 67
>PLN03075 nicotianamine synthase; Provisional
Probab=97.93 E-value=2.3e-05 Score=64.30 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=51.1
Q ss_pred CCcceEEEecCCccHH--HHHHHHHCCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCCCCC--c-ccEEE
Q 037818 131 KGVKQLVDVGGSAGDC--LRMILQKHRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFKSIP--A-ADAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~--~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~~~P--~-aD~~~ 196 (199)
.+.++|+|||||.|-+ ...+.+.+|+.+ ++.+|. |+.++.|++ .+||+|..+|..+..+ . -|+|+
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 3679999999999854 334446789999 999998 677776664 2689999999987433 2 39998
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 201 ~~ 202 (296)
T PLN03075 201 LA 202 (296)
T ss_pred Ee
Confidence 64
No 68
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.91 E-value=7.9e-06 Score=57.47 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=51.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC---CCCc--ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK---SIPA--ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~---~~P~--aD~~~l~ 198 (199)
.+|+|+|||+|.++..+++.. ..+ ++.+|+ |..++.++. .+|++++.+|+++ ..+. .|+++++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999999 777 999998 677777664 2789999999986 2444 3998874
No 69
>PHA03411 putative methyltransferase; Provisional
Probab=97.90 E-value=2.1e-05 Score=63.80 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=54.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCC-c-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIP-A-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P-~-aD~~~l~ 198 (199)
..+|||+|||+|.++..++++.+..+ ++.+|+ |..++.++++ ++++++.+|+++... . .|+++.+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence 36899999999999999999988888 999997 7777777764 789999999997432 3 4998864
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.90 E-value=1.9e-05 Score=60.16 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=50.9
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
..+|+|+|||+|.++..+.+..+ + ++.+|+ |..++.++++ -+++++.+|.++..+. .|+++.+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence 36899999999999999999987 7 889997 7777777653 4688899999874443 4988764
No 71
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.87 E-value=2.6e-05 Score=62.05 Aligned_cols=65 Identities=22% Similarity=0.257 Sum_probs=55.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCC------CCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCC-CCCc--cc
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFK-SIPA--AD 193 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~------l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~-~~P~--aD 193 (199)
.-++|||+||+|..+..+++.-++ .+ ++++|. |+.++.+++. .|+.++.+|--+ |+|. .|
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 379999999999999999999999 66 999997 8888777542 569999999987 8888 49
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+|.+.
T Consensus 180 ~yTia 184 (296)
T KOG1540|consen 180 AYTIA 184 (296)
T ss_pred eEEEe
Confidence 99885
No 72
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.85 E-value=1.4e-05 Score=63.75 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC-------CCceEEeCCCCCC---CCc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI-------LGVTHIGGDTFKS---IPA 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~-------~ri~~~~gd~f~~---~P~ 191 (199)
++..|.......+|+|+|+|.|..+..++++.++.+ .+.+++. +..+.|+++ +||+++..|+-+- .+.
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~ 113 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF 113 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence 344442134478999999999999999999999999 9999984 455566542 8999999999862 333
Q ss_pred c--cEEEec
Q 037818 192 A--DAIFMK 198 (199)
Q Consensus 192 a--D~~~l~ 198 (199)
+ |+|+++
T Consensus 114 ~~fD~Ii~N 122 (248)
T COG4123 114 ASFDLIICN 122 (248)
T ss_pred cccCEEEeC
Confidence 3 888875
No 73
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.82 E-value=0.0001 Score=57.70 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC---------CCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS---------IPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~---------~P~ 191 (199)
.+.+.|..+....+|||||||+|.++..++++. |..+ ++.+|+-+. ...++++++.+|+.+. .+.
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 344445434566799999999999999999987 4567 999998652 2236799999999873 333
Q ss_pred --ccEEEe
Q 037818 192 --ADAIFM 197 (199)
Q Consensus 192 --aD~~~l 197 (199)
.|+++.
T Consensus 116 ~~~D~V~S 123 (209)
T PRK11188 116 SKVQVVMS 123 (209)
T ss_pred CCCCEEec
Confidence 388874
No 74
>PRK05785 hypothetical protein; Provisional
Probab=97.80 E-value=4.3e-05 Score=60.60 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=49.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCcc--cEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
..+|||||||+|.++..+++.+ ..+ ++.+|. |+.++.+++. ..++.+|+.+ |+|.. |++++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEec
Confidence 5799999999999999999988 567 999998 7778887753 3466788876 66663 988864
No 75
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.77 E-value=5.4e-05 Score=61.45 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=53.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
.....+|||||||+|..+..+++. .|+.+ ++.+|. |..++.++++ +++++..+|+.+ ++|. .|+++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 455689999999999988877776 46678 999997 7888887752 689999999876 5655 3888753
No 76
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.74 E-value=0.00013 Score=60.89 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=50.5
Q ss_pred hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH-HhcC-------CCCCCceEEeCCCCC-CCCcc-c
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VGEA-------PSILGVTHIGGDTFK-SIPAA-D 193 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v-~~~a-------~~~~ri~~~~gd~f~-~~P~a-D 193 (199)
...++... .++|||||||+|.++..+++..|. + ++.+|.... +..+ ....+|+++.+|+.+ +.+.. |
T Consensus 115 ~~~l~~l~-g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD 191 (322)
T PRK15068 115 LPHLSPLK-GRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD 191 (322)
T ss_pred HHhhCCCC-CCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence 34443133 489999999999999999999876 6 899996432 2211 113589999999875 44444 9
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+++..
T Consensus 192 ~V~s~ 196 (322)
T PRK15068 192 TVFSM 196 (322)
T ss_pred EEEEC
Confidence 88753
No 77
>PRK00811 spermidine synthase; Provisional
Probab=97.74 E-value=3.2e-05 Score=63.37 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=51.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC--Cc--ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI--PA--ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~--P~--aD~ 194 (199)
.+.++||+||||.|..++++++..+..+ ++++|+ |.+++.+++ .+|++++.+|..+-+ +. -|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 4568999999999999999997544456 999998 777877764 378999999987632 22 399
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|++
T Consensus 154 Ii~ 156 (283)
T PRK00811 154 IIV 156 (283)
T ss_pred EEE
Confidence 886
No 78
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.73 E-value=7.8e-05 Score=60.03 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=51.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCccc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPAAD 193 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~aD 193 (199)
..+++..+ ..+..+|+|||||+|.++..++++.+. ++.+|. +..++.+++ .++++++.+|+.+ +++..|
T Consensus 19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 45666666 677789999999999999999999974 556675 344444432 3789999999987 455434
No 79
>PRK14968 putative methyltransferase; Provisional
Probab=97.71 E-value=7.1e-05 Score=56.94 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CC-ceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LG-VTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~r-i~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.+.++++|+|||+|.++..+++. ..+ ++.+|. |.+++.++++ ++ ++++.+|++++++. .|+++++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence 34578999999999999999998 577 899998 6677766532 23 89999999987665 4888753
No 80
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.70 E-value=8.1e-05 Score=57.60 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=52.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-a 192 (199)
..+.+.++ .....+|||||||+|.++..++++ ..+ ++.+|. |..++.+++. -++++..+|+.. +++. .
T Consensus 20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 34555555 444579999999999999999985 467 999998 6667665432 237777788764 3444 4
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 96 D~I~~~ 101 (195)
T TIGR00477 96 DFIFST 101 (195)
T ss_pred CEEEEe
Confidence 888653
No 81
>PHA03412 putative methyltransferase; Provisional
Probab=97.70 E-value=7.3e-05 Score=59.36 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=52.8
Q ss_pred cceEEEecCCccHHHHHHHHHC---CCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~---P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
..+|||+|||+|.++..++++. +..+ ++.+|+ |..++.|+++ .++.++.+|++. +.+. .|+|+.+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence 4699999999999999999875 4667 899998 6777788765 789999999986 3333 4998864
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=97.70 E-value=7e-05 Score=59.13 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.....+|+|+|||+|.++..+++. +..+ ++.+|. |..++.++++ -+++++.+|+++.++. .|+++++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence 444579999999999999998876 3347 899997 5666665542 3588999999876554 3998864
No 83
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.64 E-value=8.2e-05 Score=57.65 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=54.7
Q ss_pred hhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C-Cc
Q 037818 125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I-PA 191 (199)
Q Consensus 125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~-P~ 191 (199)
..++ .....+|+|+|||+|.++..+++.. |..+ ++.+|. |..++.++++ ++++++.+|+.+. . +.
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 4455 6666899999999999999998874 6678 999998 7777766542 5789999998752 2 22
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|++++
T Consensus 112 ~D~V~~ 117 (198)
T PRK00377 112 FDRIFI 117 (198)
T ss_pred CCEEEE
Confidence 588886
No 84
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.63 E-value=0.00012 Score=57.73 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l 197 (199)
.....+|||||||+|.++..+++.. .+ ++.+|. |..++.+++. +++.+..+| ++..+. .|+++.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~ 133 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVC 133 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEE
Confidence 3445799999999999999999875 45 789997 6667776642 589999999 443223 488765
No 85
>PRK01581 speE spermidine synthase; Validated
Probab=97.62 E-value=5.4e-05 Score=63.74 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCCC---Ccc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKSI---PAA 192 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~~---P~a 192 (199)
..+.++||+||||.|..++++++..|-.+ ++++|+ |++++.|+. .+|++++.+|-++-+ +..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 34568999999999999999997544556 999998 778887773 279999999988632 223
Q ss_pred -cEEEec
Q 037818 193 -DAIFMK 198 (199)
Q Consensus 193 -D~~~l~ 198 (199)
|+|++.
T Consensus 227 YDVIIvD 233 (374)
T PRK01581 227 YDVIIID 233 (374)
T ss_pred ccEEEEc
Confidence 888864
No 86
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.60 E-value=4.8e-05 Score=58.54 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=52.4
Q ss_pred hCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCCCCCcc--cEEEec
Q 037818 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFKSIPAA--DAIFMK 198 (199)
Q Consensus 126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~~~P~a--D~~~l~ 198 (199)
.++ -..+.+++|+|||.|.+...|+.++- + .+.+|. |..++.|++ .++|+++.+|+-+..|.+ |+++++
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 455 67788999999999999999999873 3 678998 888888875 389999999998877774 999875
No 87
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.59 E-value=0.00019 Score=62.93 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=55.5
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC---CCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK---SIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~---~~P~ 191 (199)
.+.+++.++ .....+|||||||+|.++..+++.+. + ++.+|. |..++.++. .++++++.+|+.+ ++|.
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 456666666 55567999999999999999998854 5 788896 566655542 3689999999963 4554
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+++..
T Consensus 102 ~~fD~I~~~ 110 (475)
T PLN02336 102 GSVDLIFSN 110 (475)
T ss_pred CCEEEEehh
Confidence 3988864
No 88
>PRK03612 spermidine synthase; Provisional
Probab=97.58 E-value=0.0001 Score=65.42 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=53.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCC---CCcc
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKS---IPAA 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~---~P~a 192 (199)
.+.++|+|||||+|..++++++ +|. -+ ++.+|+ |++++.+++ .+|++++.+|.++. .+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence 4568999999999999999996 677 56 999998 889988876 16899999998862 3443
Q ss_pred -cEEEec
Q 037818 193 -DAIFMK 198 (199)
Q Consensus 193 -D~~~l~ 198 (199)
|+|++.
T Consensus 374 fDvIi~D 380 (521)
T PRK03612 374 FDVIIVD 380 (521)
T ss_pred CCEEEEe
Confidence 999864
No 89
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.57 E-value=8.8e-05 Score=60.48 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-------CCCceEEeCCCCCCCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-------ILGVTHIGGDTFKSIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-------~~ri~~~~gd~f~~~P~ 191 (199)
...+++..+ .+...+|||||||-|.++..+++++ +++ ++.+.+. +..+.+++ .+++++..+|+.+ ++.
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~ 126 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG 126 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence 356778887 8888999999999999999999999 889 9999984 44444432 2789999999875 333
Q ss_pred -ccEEE
Q 037818 192 -ADAIF 196 (199)
Q Consensus 192 -aD~~~ 196 (199)
-|.|+
T Consensus 127 ~fD~Iv 132 (273)
T PF02353_consen 127 KFDRIV 132 (273)
T ss_dssp S-SEEE
T ss_pred CCCEEE
Confidence 36554
No 90
>PLN02672 methionine S-methyltransferase
Probab=97.56 E-value=0.00013 Score=69.27 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=52.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------------------CCceEEeCCCCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------------------LGVTHIGGDTFKSIP 190 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------------------~ri~~~~gd~f~~~P 190 (199)
.+|+|||||+|.++..+++++|..+ ++.+|. |..++.|+++ +||+++.+|+++..+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5899999999999999999999999 999997 6677666321 489999999998654
Q ss_pred c----ccEEEe
Q 037818 191 A----ADAIFM 197 (199)
Q Consensus 191 ~----aD~~~l 197 (199)
. -|+++-
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 2 387763
No 91
>PRK04266 fibrillarin; Provisional
Probab=97.53 E-value=0.00037 Score=55.25 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=52.7
Q ss_pred hCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHH----HhcCCCCCCceEEeCCCCCC-----CCc-ccE
Q 037818 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV----VGEAPSILGVTHIGGDTFKS-----IPA-ADA 194 (199)
Q Consensus 126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v----~~~a~~~~ri~~~~gd~f~~-----~P~-aD~ 194 (199)
.++ .....+|+|+|||+|.++..+++..+.-+ ++.+|. |.. .+.+++.++|.++.+|..++ ++. .|+
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 355 56668999999999999999999998667 889998 433 33555557899999998753 233 388
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
++.
T Consensus 145 i~~ 147 (226)
T PRK04266 145 IYQ 147 (226)
T ss_pred EEE
Confidence 763
No 92
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.52 E-value=0.00028 Score=58.14 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=53.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~ 191 (199)
..+++..+ .....+|+|||||.|.+...++++.. + ++.+|+ |..++.+++ .++++++.+|+.+ +++.
T Consensus 26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--K-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 45566665 56668999999999999999999854 5 777886 344444432 3789999999986 5555
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|+++.
T Consensus 102 ~d~Vva 107 (294)
T PTZ00338 102 FDVCVA 107 (294)
T ss_pred cCEEEe
Confidence 576653
No 93
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.51 E-value=0.00018 Score=59.00 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=52.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CCc-cc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IPA-AD 193 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P~-aD 193 (199)
.++..++ .....+|||||||+|..+..+++. ..+ ++.+|. |..++.+++. -++++..+|+.+. ++. .|
T Consensus 111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 3445444 334469999999999999999885 467 999998 5666665532 3688888998763 444 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+++..
T Consensus 187 ~I~~~ 191 (287)
T PRK12335 187 FILST 191 (287)
T ss_pred EEEEc
Confidence 88753
No 94
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.00024 Score=57.81 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------C-CCceEEeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------I-LGVTHIGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~-~ri~~~~gd~f~ 187 (199)
+.+++.+. +....+|||||||-|.+++-.+++| +.+ ++.+++ ++..+.+++ . ++|++...|+-+
T Consensus 62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 56778887 8888999999999999999999999 999 999998 455555543 1 578888888765
No 95
>PRK04148 hypothetical protein; Provisional
Probab=97.50 E-value=0.0003 Score=51.08 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=49.7
Q ss_pred HhhhCCCCCCcceEEEecCCccH-HHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc----ccEEE
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA----ADAIF 196 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~----aD~~~ 196 (199)
+.+.++ -.+..+++|||+|.|. ++..|.+. ... ++.+|. |..++.+++. .+.++.+|+|++-+. +|+++
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 444454 2234789999999996 87777765 467 889997 6667666543 579999999987554 57764
No 96
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.49 E-value=0.00022 Score=54.97 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=47.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~--aD~~~l~ 198 (199)
...+|+|||||+|.++..+++. ...+ ++.+|. |+.++.+++ .+++++.+|+.+ +++. .|++++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 3469999999999999888765 4667 888897 455655543 468888888865 2443 4999875
No 97
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.47 E-value=0.00032 Score=58.52 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=55.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCCCCc--
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKSIPA-- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~~P~-- 191 (199)
.+++..+ .+...+|||||||+|.++..+++..+. -+ ++.+|. |+.++.|++ .++++++.+|..+..+.
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3445555 556689999999999999999998875 35 788887 666666654 26799999998764432
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|++++
T Consensus 149 ~fD~Ii~ 155 (322)
T PRK13943 149 PYDVIFV 155 (322)
T ss_pred CccEEEE
Confidence 388876
No 98
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.47 E-value=0.00011 Score=61.29 Aligned_cols=63 Identities=14% Similarity=0.016 Sum_probs=48.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
..+|||||||.|.++..+++ +..+ ++.+|. |+.++.|++. .+|+++.+|+.+ +.+. .|++++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~--~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR--MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH--cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 35899999999999998876 4677 999997 6777776632 479999999765 3333 3988763
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.47 E-value=0.00034 Score=53.18 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=44.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------CC-CCceEEeCCCCCC--CCcc-cEEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------SI-LGVTHIGGDTFKS--IPAA-DAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------~~-~ri~~~~gd~f~~--~P~a-D~~~ 196 (199)
.+..+|||+|||.|+++.+|++.-=.-+ -+.+|- +..++.|+ .. +.|+|+..|+++| .+.. |+++
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe
Confidence 3445999999999999999998654433 446663 44444443 33 4499999999985 3433 7765
No 100
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.45 E-value=0.00049 Score=52.79 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=52.0
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC---------CCc-
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS---------IPA- 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~---------~P~- 191 (199)
+-+.+.......+|||||||+|.++..+++++ +..+ ++.+|+-+.. ..++++++.+|+.++ .|.
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 33444434566899999999999999999887 6677 9999986533 346789999998752 333
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|+++.
T Consensus 98 ~~D~V~~ 104 (188)
T TIGR00438 98 KVDVVMS 104 (188)
T ss_pred CccEEEc
Confidence 488875
No 101
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.42 E-value=0.00018 Score=55.19 Aligned_cols=64 Identities=20% Similarity=0.373 Sum_probs=47.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH-HhcCCCCCCceEEeCCCCC---CCCc-c-cEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VGEAPSILGVTHIGGDTFK---SIPA-A-DAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v-~~~a~~~~ri~~~~gd~f~---~~P~-a-D~~~l~ 198 (199)
...+|||+|||.|.++..|.+. .+++ +..+|+.+. +..+. ...+..+.+|+-+ .+|. . |.++|+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 4489999999999999777774 7898 888887432 22221 2567788899886 3666 3 999886
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.40 E-value=0.00036 Score=46.56 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=47.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCC------CCCCceEEeCCCCCCC---Cc-ccEEEec
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAP------SILGVTHIGGDTFKSI---PA-ADAIFMK 198 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~------~~~ri~~~~gd~f~~~---P~-aD~~~l~ 198 (199)
+++|+|||.|.++..+++ .+..+ .+.+|.. ..+..++ ...++++..+|+.+.. +. .|++++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEc
Confidence 589999999999999998 77788 9999974 4444443 1378999999999743 22 4988864
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.38 E-value=0.00052 Score=53.63 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=52.8
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc---c
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA---A 192 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~---a 192 (199)
+.+.++ .....+|+|||||+|.++..+++... + ++.+|. |..++.++++ .++++..+|.++.+|. .
T Consensus 70 l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 70 MTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 344455 56668999999999999987777754 5 777775 6666666542 5699999999875543 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 146 D~I~~~ 151 (212)
T PRK00312 146 DRILVT 151 (212)
T ss_pred CEEEEc
Confidence 988864
No 104
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.37 E-value=0.00079 Score=55.96 Aligned_cols=73 Identities=14% Similarity=0.014 Sum_probs=49.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-HHhcC-------CCCCCceEEeCCCCC-CCCc-c
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVGEA-------PSILGVTHIGGDTFK-SIPA-A 192 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v~~~a-------~~~~ri~~~~gd~f~-~~P~-a 192 (199)
++..++ ....++|+|||||+|.++..+++..+. + ++.+|.-. .+..+ ....++.+..+|+-+ +.+. .
T Consensus 113 ~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 113 VLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 444443 333489999999999999999988775 6 89999633 33221 123678888888754 2222 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+|+..
T Consensus 190 D~V~s~ 195 (314)
T TIGR00452 190 DTVFSM 195 (314)
T ss_pred CEEEEc
Confidence 988753
No 105
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00029 Score=51.63 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc-c--
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA-A-- 192 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~-a-- 192 (199)
.|.+-|+.+.+ +++.|+|||.|.+. ++-.+|..+.++.||+ |+.++.++.+ -+|.+..+|+.++.|. +
T Consensus 39 ~Ih~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 39 TIHNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeE
Confidence 34455542444 89999999999998 5567788887899998 8888888875 4688999999987666 2
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|..+++
T Consensus 116 DtaviN 121 (185)
T KOG3420|consen 116 DTAVIN 121 (185)
T ss_pred eeEEec
Confidence 666553
No 106
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00027 Score=57.80 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=56.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------CCceEEeCCCCC---CCCc-ccE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------LGVTHIGGDTFK---SIPA-ADA 194 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------~ri~~~~gd~f~---~~P~-aD~ 194 (199)
.++.++||=||||.|..++++++..+.-+ ++++|+ |.|++.+++. +|++.+.+|=++ ..+. .|+
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence 45557999999999999999999888777 999998 8999988752 899999999886 3444 499
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
|++-
T Consensus 153 Ii~D 156 (282)
T COG0421 153 IIVD 156 (282)
T ss_pred EEEc
Confidence 9863
No 107
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.32 E-value=0.00054 Score=58.55 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=52.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCCCCCc-ccEEE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFKSIPA-ADAIF 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~~~P~-aD~~~ 196 (199)
.+++.++ .....+|||||||+|.++..+++.+ +.+ ++.+|+ |+.++.+++. ..+++..+|+.+ ++. .|+++
T Consensus 158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv 233 (383)
T PRK11705 158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV 233 (383)
T ss_pred HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence 4556665 6666899999999999999998876 578 999997 6777777653 347888888754 233 38775
No 108
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.29 E-value=0.00032 Score=57.96 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=46.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccch-HHHhcCCC-----C--CCceEEeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLP-EVVGEAPS-----I--LGVTHIGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp-~v~~~a~~-----~--~ri~~~~gd~f~ 187 (199)
+.+++.++ ...+|||+|||+|..+..++++.+ ..+ .+.+|+. +.++.+++ . -+|.++.|||.+
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 34444433 346899999999999999999998 688 9999985 44454432 2 346778999986
No 109
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.28 E-value=0.00039 Score=57.11 Aligned_cols=65 Identities=22% Similarity=0.100 Sum_probs=45.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
...+|+|||||+|.++..+++. +.-+ ++.+|. |..++.++++ +++.+..+|.....+. .|+++.+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan 232 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence 3489999999999999888865 4457 999997 5666666653 4677777764332233 4988763
No 110
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.26 E-value=0.00028 Score=54.67 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=42.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------CCCCceEEeCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------SILGVTHIGGDTFK 187 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------~~~ri~~~~gd~f~ 187 (199)
..+||||||.|.++.++++.+|+.. .+.+|. +..+..+. ..+++.++.+|...
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence 4999999999999999999999999 999997 34444332 24899999998775
No 111
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.00059 Score=55.05 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEE----eCCCCCCCC--cc--c
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHI----GGDTFKSIP--AA--D 193 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~----~gd~f~~~P--~a--D 193 (199)
+.....++|+|||+|..+..++..-|..+ +|.+|. +..+..|.++ +||..+ ..|-+++.| .+ |
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence 55667999999999999999999999999 999998 4455555543 787776 566665443 33 6
Q ss_pred EEE
Q 037818 194 AIF 196 (199)
Q Consensus 194 ~~~ 196 (199)
+++
T Consensus 225 llv 227 (328)
T KOG2904|consen 225 LLV 227 (328)
T ss_pred EEe
Confidence 554
No 112
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.24 E-value=0.00021 Score=62.14 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=53.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC-----
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI----- 189 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~----- 189 (199)
.+++.++ .....+|+|+|||+|.++..+++.. .+ ++.+|. |+.++.|+++ ++++++.+|+.+.+
T Consensus 288 ~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~ 363 (443)
T PRK13168 288 RALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW 363 (443)
T ss_pred HHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence 3334443 3445799999999999999999886 46 889997 6777777653 57999999997532
Q ss_pred Cc--ccEEEec
Q 037818 190 PA--ADAIFMK 198 (199)
Q Consensus 190 P~--aD~~~l~ 198 (199)
+. .|++++.
T Consensus 364 ~~~~fD~Vi~d 374 (443)
T PRK13168 364 ALGGFDKVLLD 374 (443)
T ss_pred hcCCCCEEEEC
Confidence 22 3988863
No 113
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.22 E-value=0.00041 Score=56.41 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=50.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~ 195 (199)
++.++||+||||+|.++..+++..+..+ .+++|+ |.+++.+++ .+|++++.+|.++- .+.. |+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 4567999999999999999998766667 899997 566666654 26899999998752 2333 888
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
++
T Consensus 150 i~ 151 (270)
T TIGR00417 150 IV 151 (270)
T ss_pred EE
Confidence 76
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.21 E-value=0.00039 Score=54.45 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=55.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||+|+|.++.-+++.. +.-+ ++.+|. |..++.|+++ .+|+++.||-...+|.
T Consensus 62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 35667777 7777999999999999999888875 3345 677774 7778888753 6899999999887666
Q ss_pred c--cEEEec
Q 037818 192 A--DAIFMK 198 (199)
Q Consensus 192 a--D~~~l~ 198 (199)
+ |.+++.
T Consensus 140 apfD~I~v~ 148 (209)
T PF01135_consen 140 APFDRIIVT 148 (209)
T ss_dssp -SEEEEEES
T ss_pred CCcCEEEEe
Confidence 3 888763
No 115
>PLN02823 spermine synthase
Probab=97.20 E-value=0.00047 Score=57.83 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~ 195 (199)
.+.++||-||||.|..++++++..+.-+ ++++|+ |.+++.+++ .+|++++.+|-++- .+.. |+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3568999999999999999998666667 999998 788888874 27999999998863 2233 888
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
++
T Consensus 181 i~ 182 (336)
T PLN02823 181 IG 182 (336)
T ss_pred Ee
Confidence 86
No 116
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.20 E-value=0.00029 Score=55.04 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=47.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---------------CCCceEEeCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---------------ILGVTHIGGDT 185 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---------------~~ri~~~~gd~ 185 (199)
.+++.++ ......++|||+|.|....+.+-.++--+ ++.+++ |...+.|.. ..++++..|||
T Consensus 33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 4556666 77778999999999999998887777555 888886 433333321 26789999999
Q ss_pred CCC------CCcccEEEecC
Q 037818 186 FKS------IPAADAIFMKW 199 (199)
Q Consensus 186 f~~------~P~aD~~~l~~ 199 (199)
+++ +-.||++++++
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--
T ss_pred cccHhHhhhhcCCCEEEEec
Confidence 973 24479999875
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.20 E-value=0.00027 Score=58.14 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=51.3
Q ss_pred HHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCce
Q 037818 108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVT 179 (199)
Q Consensus 108 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~ 179 (199)
|-..-+..++.... +++.+. . +.++|+|||||+|.++++.++.... + ++.+|. |..++.++++ +++.
T Consensus 140 FGTG~H~TT~lcl~-~l~~~~-~-~g~~vLDvG~GSGILaiaA~klGA~-~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 140 FGTGHHPTTRLCLE-LLEKYV-K-PGKRVLDVGCGSGILAIAAAKLGAK-K-VVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp S-SSHCHHHHHHHH-HHHHHS-S-TTSEEEEES-TTSHHHHHHHHTTBS-E-EEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred ccCCCCHHHHHHHH-HHHHhc-c-CCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 54444444444433 334444 3 3479999999999999999987553 5 889997 6777777763 5665
Q ss_pred EEeCCCCCCCCc--ccEEEec
Q 037818 180 HIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 180 ~~~gd~f~~~P~--aD~~~l~ 198 (199)
.. ...+.+. .|+|+-+
T Consensus 215 v~---~~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 215 VS---LSEDLVEGKFDLVVAN 232 (295)
T ss_dssp ES---CTSCTCCS-EEEEEEE
T ss_pred EE---EecccccccCCEEEEC
Confidence 43 1223333 4888753
No 118
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.19 E-value=0.00025 Score=55.14 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=48.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC--c--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP--A--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P--~--aD~~~l~ 198 (199)
..+|+|+|||+|.++.+++.+.. .+ ++.+|. |..++.++++ ++++++.+|+++.++ . .|++++.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence 36999999999999998776664 46 888886 6666666542 579999999986432 2 4998864
No 119
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.19 E-value=0.0018 Score=50.90 Aligned_cols=55 Identities=11% Similarity=-0.061 Sum_probs=43.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------------------CCCCceEEeCCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------------------SILGVTHIGGDTFKS 188 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------------------~~~ri~~~~gd~f~~ 188 (199)
....+|||+|||.|..+..++++ ..+ +|.+|. |..++.+. +..+|++..+|+|+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 34479999999999999999875 677 899998 55555431 125799999999973
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.18 E-value=0.00058 Score=56.82 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=45.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCCCCCc-ccEEEe
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFKSIPA-ADAIFM 197 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~~~P~-aD~~~l 197 (199)
..+|||||||+|.++..+++. ..+ ++.+|. |..++.++++ .+++|..+|+.+ ++. .|++++
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence 469999999999999999986 467 999998 5566666532 357888899754 333 387764
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.13 E-value=0.00089 Score=58.28 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=55.7
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~ 191 (199)
+...++ .....+|+|+|||+|..+..+++.. |..+ ++.+|. +..++.++++ +.|+++.+|+.+. ++.
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 334455 4556799999999999999999986 6778 999998 6777666542 4599999999762 343
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|+|++
T Consensus 320 ~fD~Vl~ 326 (444)
T PRK14902 320 KFDKILV 326 (444)
T ss_pred cCCEEEE
Confidence 498876
No 122
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.12 E-value=0.00063 Score=59.20 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=60.3
Q ss_pred cccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC----CCCCeeeeccc-hHH
Q 037818 94 AYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH----RFICEGINFDL-PEV 168 (199)
Q Consensus 94 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~~v~Dl-p~v 168 (199)
-||.+++|+..-..|.+|+. ... ....+.-..-.+...|+|||+|+|-++...+++. -..+ +..++- |..
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~---~al-~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn~~A 226 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE---EAL-KDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKNPNA 226 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH---HHH-HHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESSTHH
T ss_pred cHhhHhcCHHHHHHHHHHHH---HHH-HhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCCHhH
Confidence 47888899988888888863 111 1222221100135789999999999987776654 4455 777764 432
Q ss_pred HhcC----CC---CCCceEEeCCCCC-CCCc-ccEEE
Q 037818 169 VGEA----PS---ILGVTHIGGDTFK-SIPA-ADAIF 196 (199)
Q Consensus 169 ~~~a----~~---~~ri~~~~gd~f~-~~P~-aD~~~ 196 (199)
+... +. .++|+.+.+|+-+ ..|+ +|+++
T Consensus 227 ~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 227 VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 2221 11 2899999999998 6776 69986
No 123
>PTZ00146 fibrillarin; Provisional
Probab=97.12 E-value=0.0018 Score=53.08 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=51.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccchH-----HHhcCCCCCCceEEeCCCCCCC------CcccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLPE-----VVGEAPSILGVTHIGGDTFKSI------PAADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp~-----v~~~a~~~~ri~~~~gd~f~~~------P~aD~~~l 197 (199)
+....+|||+|||+|.++..+++... .=+ ++.+|..+ .++.++..++|.++.+|...+. +..|++++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 45667999999999999999999874 446 88888753 5566666688999999986542 22599886
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 209 D 209 (293)
T PTZ00146 209 D 209 (293)
T ss_pred e
Confidence 3
No 124
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.11 E-value=0.00045 Score=57.47 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=49.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~-aD~~~l~ 198 (199)
..+|||+|||+|.++..+++. ..+ ++.+|. |..++.|+++ ++++++.+|+.+. .+. .|++++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 479999999999999999984 456 899997 6777777642 6799999999752 222 3888764
No 125
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00083 Score=51.38 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=51.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~aD~~~l~ 198 (199)
|.+ ++|+|+|||+|.++.+.+-..|. + ++.+|. |+.++.++++ .+|.|+..|.-+--+..|.++|+
T Consensus 44 l~g-~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 44 LEG-KTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred cCC-CEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 444 78999999999999998877765 3 677886 7888888865 68999999987633334777775
No 126
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.09 E-value=0.0011 Score=54.53 Aligned_cols=76 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC--C-CC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK--S-IP 190 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~--~-~P 190 (199)
...+++.+. -.....+||++||.|.++..+++..| +.+ ++.+|. |+.++.+++. +|++++.+||-+ . ++
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 345666665 44457999999999999999999997 788 999997 7788777653 589999999985 1 32
Q ss_pred ----cccEEEe
Q 037818 191 ----AADAIFM 197 (199)
Q Consensus 191 ----~aD~~~l 197 (199)
..|.+++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 2477775
No 127
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.07 E-value=0.00069 Score=54.43 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
....+|+|||||+|.++..+++..+. + ++.+|. |..++.+++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~-v~giDis~~~l~~A~~ 160 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-K-VLAVDIDPQAVEAARE 160 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEEECCHHHHHHHHH
Confidence 34589999999999999988776554 7 889998 677777765
No 128
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.06 E-value=0.00086 Score=56.21 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=49.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKSI 189 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~~ 189 (199)
.+.++++-+|||.|.-+++++ +||...+.+.+|+ |.+++.++. .+|++.+.-|-|+.+
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl 359 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL 359 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH
Confidence 467899999999999999987 6898887999998 899998873 289999998888753
No 129
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0008 Score=55.27 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=47.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCce---EEeCCCCCCCCc---
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVT---HIGGDTFKSIPA--- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~---~~~gd~f~~~P~--- 191 (199)
.+++.+. .+.++++|+|||+|.++++.++--.. + ++.+|. |..++.++++ +.+. ...+.....+|+
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~-~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAK-K-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCc-e-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 3445554 46699999999999999999876543 4 788997 6677777764 3343 222222223443
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|+|+-
T Consensus 230 ~DvIVA 235 (300)
T COG2264 230 FDVIVA 235 (300)
T ss_pred ccEEEe
Confidence 488764
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0023 Score=49.91 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=57.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-a 192 (199)
..+++.++ .+...+||+||+|+|..+.-+++.-- + ++-+++ ++..+.|+++ .+|...-||=...+|+ +
T Consensus 62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 35667777 78889999999999998888887666 5 767776 6666777652 6799999999988777 5
Q ss_pred --cEEEe
Q 037818 193 --DAIFM 197 (199)
Q Consensus 193 --D~~~l 197 (199)
|.|+.
T Consensus 138 PyD~I~V 144 (209)
T COG2518 138 PYDRIIV 144 (209)
T ss_pred CcCEEEE
Confidence 88875
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.01 E-value=0.0019 Score=54.02 Aligned_cols=73 Identities=18% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA-- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~-- 191 (199)
.++.... +....+|+|+|||+|.++.+++.. ..+ ++.+|. |..++.++.+ +.+.+..+|+.+ +++.
T Consensus 173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~ 248 (329)
T TIGR01177 173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES 248 (329)
T ss_pred HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence 3444444 666789999999999999887653 567 889998 6667666542 448899999987 5543
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 249 ~D~Iv~d 255 (329)
T TIGR01177 249 VDAIATD 255 (329)
T ss_pred CCEEEEC
Confidence 3888763
No 132
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=96.98 E-value=0.0011 Score=55.23 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=49.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEe----CCCCCCC--Cc--ccE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIG----GDTFKSI--PA--ADA 194 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~----gd~f~~~--P~--aD~ 194 (199)
...++||||+|+|.+...++.+.++++ ++..|. |..++.|+++ +||++.. .++|+.+ +. -|+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 457999999999998888899999999 999997 6777777642 4777753 4566542 33 388
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
++.+
T Consensus 193 ivcN 196 (321)
T PRK11727 193 TLCN 196 (321)
T ss_pred EEeC
Confidence 8754
No 133
>PRK00536 speE spermidine synthase; Provisional
Probab=96.94 E-value=0.0012 Score=53.39 Aligned_cols=64 Identities=14% Similarity=0.047 Sum_probs=49.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCCC-c-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSIP-A-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~P-~-aD~~~ 196 (199)
-.+.++||=||||.|..+++++|. |. + ++.+|+ ++|++.+++ .+|++.+. ++.... . -|+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEE
Confidence 356799999999999999999976 55 7 999998 678888776 28999886 343322 3 39888
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+-
T Consensus 145 vD 146 (262)
T PRK00536 145 CL 146 (262)
T ss_pred Ec
Confidence 63
No 134
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.93 E-value=0.00079 Score=53.65 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=52.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---------c
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---------A 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---------~ 191 (199)
..+.++|||||+|+|.-+..+++..| +-+ ++.+|. |+.++.|+++ ++|+++.||..+.+| .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 45678999999999999999998866 667 999997 5667777653 789999999986321 2
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
-|++++
T Consensus 145 fD~Vfi 150 (234)
T PLN02781 145 FDFAFV 150 (234)
T ss_pred CCEEEE
Confidence 388876
No 135
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.90 E-value=0.0034 Score=49.48 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=46.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCC------------------CCCCceEEeCCCCCCCCc
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAP------------------SILGVTHIGGDTFKSIPA 191 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~------------------~~~ri~~~~gd~f~~~P~ 191 (199)
....+|||+|||.|..+..|+++ ..+ ++.+|.. ..++.+. ...+|++..+|+|+..+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34479999999999999999874 778 9999984 4455431 126799999999974322
Q ss_pred ----ccEEE
Q 037818 192 ----ADAIF 196 (199)
Q Consensus 192 ----aD~~~ 196 (199)
.|+++
T Consensus 113 ~~~~fd~v~ 121 (218)
T PRK13255 113 DLADVDAVY 121 (218)
T ss_pred cCCCeeEEE
Confidence 27665
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.86 E-value=0.0024 Score=55.34 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=55.1
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc--
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA-- 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~-- 191 (199)
++..++ .....+|+|+|||+|..+..+++..++.+ ++.+|. |..++.++++ -+++++.+|..+. .+.
T Consensus 236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 334455 44557999999999999999999998878 999997 6667766643 2478999999862 222
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|.|++
T Consensus 314 fD~Vl~ 319 (427)
T PRK10901 314 FDRILL 319 (427)
T ss_pred CCEEEE
Confidence 488875
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0011 Score=52.67 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHhhhCC-CCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818 121 TSVLDGYN-GFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 121 ~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
+..+..+. .|-..+.+|||||++|.+...+++.|-... .+.+|. |.-|..|++
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARK 100 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHH
Confidence 44555553 466779999999999999999999999999 999998 555677765
No 138
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.81 E-value=0.0025 Score=49.18 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-----CCCceEEeCCCCC-CCCcc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-----ILGVTHIGGDTFK-SIPAA- 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-----~~ri~~~~gd~f~-~~P~a- 192 (199)
+.+.++++ .-+..++||+|||.|.-+.-|+++ ... ++.+|.. ..++.+++ .-.|++...|+.+ .+|..
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 34666777 555689999999999999999988 455 7788873 34444332 2349999999987 46654
Q ss_pred cEEE
Q 037818 193 DAIF 196 (199)
Q Consensus 193 D~~~ 196 (199)
|+|+
T Consensus 96 D~I~ 99 (192)
T PF03848_consen 96 DFIV 99 (192)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 8875
No 139
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.80 E-value=0.0023 Score=53.18 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=50.8
Q ss_pred HHhhh-CCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc-
Q 037818 122 SVLDG-YNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA- 191 (199)
Q Consensus 122 ~~~~~-~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~- 191 (199)
++.+. -| |++ +.|||||+|+|.++.-.+.+.- +++-.++-.+..+.|+. .+||+.++|-+-+ ++|+
T Consensus 168 Ail~N~sD-F~~-kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk 243 (517)
T KOG1500|consen 168 AILENHSD-FQD-KIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEK 243 (517)
T ss_pred HHHhcccc-cCC-cEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence 44443 35 766 8999999999998876655432 22555666555555553 2999999999987 8999
Q ss_pred ccEEE
Q 037818 192 ADAIF 196 (199)
Q Consensus 192 aD~~~ 196 (199)
+|+++
T Consensus 244 ~DviI 248 (517)
T KOG1500|consen 244 VDVII 248 (517)
T ss_pred ccEEE
Confidence 59886
No 140
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.79 E-value=0.0031 Score=50.10 Aligned_cols=58 Identities=22% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH--HHhcCCCCCCce
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE--VVGEAPSILGVT 179 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~--v~~~a~~~~ri~ 179 (199)
...+++.++..-..++++|||||+|.++..+++. +.-+ ++.+|.-. .....++++|+.
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~ 122 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVK 122 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCee
Confidence 3455566551134579999999999999999986 4455 89999844 333455556643
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.72 E-value=0.0017 Score=54.01 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=52.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC----C---CCceEEeCCCCC-CCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS----I---LGVTHIGGDTFK-SIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~----~---~ri~~~~gd~f~-~~P~--aD~~~l 197 (199)
+.+.|+|||||+|.++.-.+++. .-+ +..+|-.++.+.+.+ + +.|+...|..-+ .+|. -|+++-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence 34899999999999999999999 556 899998888877764 2 678999999887 6773 388764
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0022 Score=50.82 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=40.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----C--CCCceEEeCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----S--ILGVTHIGGDTF 186 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----~--~~ri~~~~gd~f 186 (199)
..+|+||||.|.+..++++++|+.. .+.++. ..++..+. + ..+|..+.+|--
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~ 108 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV 108 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence 6899999999999999999999999 999996 33333332 1 247777777654
No 143
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.64 E-value=0.0028 Score=46.04 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=39.9
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
+++|||+|.|.++..+++.+|..+ ++.+|- |...+.++++ ++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999 999996 5666555431 446666655553
No 144
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=96.61 E-value=0.0011 Score=56.57 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=48.2
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC----cccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP----AADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P----~aD~~~l~ 198 (199)
..+|+|++||+|.++..++.. ..+ ++.+|. |..++.++++ +++++..+|+.+..+ ..|++++.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 368999999999999999854 456 889996 7777777653 579999999865222 24888763
No 145
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.61 E-value=0.0011 Score=57.42 Aligned_cols=72 Identities=18% Similarity=0.331 Sum_probs=53.2
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CC--
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IP-- 190 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P-- 190 (199)
+.+.+. ..+..+|+|+|||+|.++..+++... + ++.+|. |+.++.|+++ ++++++.+|..+. ++
T Consensus 284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--S-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--E-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 334344 45557999999999999999998753 5 888997 7888877753 6899999998642 21
Q ss_pred -c-ccEEEec
Q 037818 191 -A-ADAIFMK 198 (199)
Q Consensus 191 -~-aD~~~l~ 198 (199)
. .|++++.
T Consensus 360 ~~~~D~vi~d 369 (431)
T TIGR00479 360 GQIPDVLLLD 369 (431)
T ss_pred CCCCCEEEEC
Confidence 1 3888763
No 146
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.60 E-value=0.0043 Score=49.02 Aligned_cols=64 Identities=16% Similarity=-0.016 Sum_probs=45.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC-----CCceEEeCCCCCC--CC-c-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI-----LGVTHIGGDTFKS--IP-A-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~-----~ri~~~~gd~f~~--~P-~-aD~~~l~ 198 (199)
...+|||||||+|.++..+++. ..+ ++.+|.. ..++.++++ .+++++.+|+.+- .+ . .|++++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence 4578999999999999999886 457 8889974 555555431 3577887777542 12 2 3988764
No 147
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.48 E-value=0.0017 Score=52.12 Aligned_cols=66 Identities=27% Similarity=0.301 Sum_probs=50.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCc-c-cE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPA-A-DA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~-a-D~ 194 (199)
.+.++||=||||.|..++++++..|-.+ .+++|+ |.|++.+++ .+|++.+.+|-+. ..+. . |+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 4678999999999999999986665666 999998 788888764 2799999998764 4444 4 88
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
+++
T Consensus 154 Ii~ 156 (246)
T PF01564_consen 154 IIV 156 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 148
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.44 E-value=0.0061 Score=49.78 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=51.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCC------CCC-ceEEeCCCCCC------CCcccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPS------ILG-VTHIGGDTFKS------IPAADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~------~~r-i~~~~gd~f~~------~P~aD~ 194 (199)
...-+||||.||+|.+....++.+|. .+ +.+-|. |..++.+++ ... ++|..+|-|+. .|.-++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 35679999999999999999999998 66 888886 667777664 244 49999999973 232377
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
++++
T Consensus 213 ~iVs 216 (311)
T PF12147_consen 213 AIVS 216 (311)
T ss_pred EEEe
Confidence 6654
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.36 E-value=0.0084 Score=52.26 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
.....+|+|+|||+|..+..+++..+ .-+ ++.+|. |..++.++++ ++|+++.+|..+..|. .|+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 34457999999999999998888764 456 899997 5666665542 5789999999864333 498886
No 150
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.34 E-value=0.01 Score=48.02 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=50.1
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----CCCCceEEeCCCCC-CCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----SILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----~~~ri~~~~gd~f~-~~P~ 191 (199)
+..+++..+ ......|+|||.|.|.+...|++.. -+ .++++. |.-++..+ ..+|++.+.+|+++ +.+.
T Consensus 19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 456677776 6677999999999999999999999 44 667775 33333332 35899999999997 4443
No 151
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.32 E-value=0.0054 Score=48.01 Aligned_cols=64 Identities=14% Similarity=-0.024 Sum_probs=46.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~-aD~~~l~ 198 (199)
+..+|+|+|||+|.++..+++.. .+ ++.+|+ |..++.+++. .++++..+|+.+ + .|. .|++++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 35799999999999999998865 35 788887 4555655531 268888888764 2 223 4988764
No 152
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.27 E-value=0.0082 Score=44.05 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=30.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE 171 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~ 171 (199)
....+|||||||.|.++..+.+..+ + .+.+|. |..++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh
Confidence 4568999999999999999966655 7 899997 455544
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.26 E-value=0.0031 Score=58.06 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=50.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC---Cc-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI---PA-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~---P~-aD~~~l~ 198 (199)
+.++|||+|||+|.++..+++. ..-+ ++.+|. +..++.++++ ++++++.+|.++.+ +. -|+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3579999999999999999986 3346 899997 6777777652 48999999998632 33 4998873
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.22 E-value=0.0027 Score=48.96 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=43.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK 187 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~ 187 (199)
..+|+|++||+|.++.+++.+... + ++.+|. +..++.++++ ++++++.+|.++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~ 110 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR 110 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence 378999999999999999999874 6 888887 5666655542 578999999975
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.21 E-value=0.004 Score=53.47 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC------Cc-ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI------PA-ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~------P~-aD~ 194 (199)
.+.++|||+|||+|.++.+.+.. ...+ ++.+|. |..++.++++ ++++++.+|.|+.+ .. .|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 34589999999999998876643 3446 899997 6667766642 37999999999732 12 499
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 297 VilD 300 (396)
T PRK15128 297 IVMD 300 (396)
T ss_pred EEEC
Confidence 9874
No 156
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.20 E-value=0.0037 Score=50.20 Aligned_cols=61 Identities=16% Similarity=0.052 Sum_probs=44.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------C----CceEEeCCCCCCCCcccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------L----GVTHIGGDTFKSIPAADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~----ri~~~~gd~f~~~P~aD~~~l 197 (199)
.+|||||||.|.++..|++.. .. ++.+|. +..++.|++. . |+++...|.-+-.+.-|+|+.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred ceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence 679999999999999999988 34 668897 6777777652 2 477776666554444577653
No 157
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.18 E-value=0.012 Score=46.46 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=46.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC---C---------------CCCceEEeCCCCCCCC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP---S---------------ILGVTHIGGDTFKSIP 190 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~---~---------------~~ri~~~~gd~f~~~P 190 (199)
.....+|++.|||.|.-+..|+++ ..+ ++.+|+ |..++.+. . .++|++..||||+--|
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~ 111 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP 111 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence 445579999999999999999987 467 999998 45565541 0 1579999999998322
Q ss_pred c----ccEEE
Q 037818 191 A----ADAIF 196 (199)
Q Consensus 191 ~----aD~~~ 196 (199)
. -|+++
T Consensus 112 ~~~g~fD~iy 121 (218)
T PF05724_consen 112 EDVGKFDLIY 121 (218)
T ss_dssp SCHHSEEEEE
T ss_pred hhcCCceEEE
Confidence 2 27765
No 158
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.021 Score=46.06 Aligned_cols=70 Identities=23% Similarity=0.410 Sum_probs=53.9
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcC-CCCCCceEEeCCCCC-CCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEA-PSILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a-~~~~ri~~~~gd~f~-~~P~ 191 (199)
...+++..+ -.....|++||.|.|.+...|+++...+. ++=.|. -+++... ...++++.+.||+.+ ++|.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~-aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVT-AIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEE-EEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 456777766 55578999999999999999999999988 776664 2333322 246899999999997 6774
No 159
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.11 E-value=0.0041 Score=48.58 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=46.4
Q ss_pred EEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc---ccEEEe
Q 037818 136 LVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA---ADAIFM 197 (199)
Q Consensus 136 vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~---aD~~~l 197 (199)
|.||||-||.+...|+++...-+ ++..|. |.-++.|++ .+||++.-||=++.++. .|++++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence 68999999999999999999999 999997 555555553 38999999998887665 467765
No 160
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.07 E-value=0.0081 Score=53.25 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=46.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcCCC-----CCCceEEeCCCC---CCCCcc--cEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEAPS-----ILGVTHIGGDTF---KSIPAA--DAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a~~-----~~ri~~~~gd~f---~~~P~a--D~~~l 197 (199)
+...+||||||.|.++.++++++|+.. .+.+|. +.+....+. ..++.++.+|+- .-+|.+ |-+++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 358999999999999999999999999 999996 333322221 367777777763 235652 55554
No 161
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.97 E-value=0.024 Score=47.57 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=50.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCC-c--ccEEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIP-A--ADAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P-~--aD~~~ 196 (199)
....++||||+++|.+...++++. .+ ++.+|.-..-......+||+++.+|-|...| . .|+++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEE
Confidence 456899999999999999999984 57 9999966555555667999999999997555 2 26655
No 162
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.94 E-value=0.0016 Score=48.91 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=44.1
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC--c-ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP--A-ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P--~-aD~~~l~ 198 (199)
+.|+|+-||.|.-++++++.+.+ ++-+|. |..++.++-+ +||.++.||+++- +. . .|+++++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 47999999999999999999765 556776 6666666642 7999999999962 33 2 4999875
No 163
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.92 E-value=0.0056 Score=48.59 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=33.6
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI 175 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~ 175 (199)
.+|||||||-|.++..+++.. .+ ++..|. ++.|+.|+..
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLH 100 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHh
Confidence 799999999999999999998 67 889997 5677777753
No 164
>PLN02476 O-methyltransferase
Probab=95.91 E-value=0.0067 Score=49.56 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--------c-
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--------A- 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--------~- 191 (199)
..+.++||+||.++|..+..+++..| +-+ .+-+|. |+..+.|+++ ++|+++.||..+.+| .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 55679999999999999999999876 455 788887 5666777652 799999999876332 2
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
-|++++
T Consensus 195 FD~VFI 200 (278)
T PLN02476 195 YDFAFV 200 (278)
T ss_pred CCEEEE
Confidence 388876
No 165
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=95.91 E-value=0.036 Score=44.94 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=54.9
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc---hHHHhcCCCC---CCceEEeCCCCC-CCCcc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL---PEVVGEAPSI---LGVTHIGGDTFK-SIPAA 192 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl---p~v~~~a~~~---~ri~~~~gd~f~-~~P~a 192 (199)
+..|++.-+ ......||+||.|+|.+...++++--.+= ++=.|- +++....+-. .+...+.||+++ ++|--
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVv-A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f 124 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVV-AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF 124 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEE-EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence 346666666 67778999999999999999999876655 444442 4444444433 689999999997 78886
Q ss_pred cEEE
Q 037818 193 DAIF 196 (199)
Q Consensus 193 D~~~ 196 (199)
|+.+
T Consensus 125 d~cV 128 (315)
T KOG0820|consen 125 DGCV 128 (315)
T ss_pred ceee
Confidence 6554
No 166
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=95.86 E-value=0.0075 Score=47.40 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCC--ceEEeCCCCCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILG--VTHIGGDTFKSIP 190 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~r--i~~~~gd~f~~~P 190 (199)
....|||||||+|..+..+...- .. -+.+|. |+.++.|.+ .. =.++-+||=+.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~-~e~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVE-RELEGDLILCDMGEGLP 107 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCC
Confidence 36899999999999888776554 55 789996 888888875 22 2466677766443
No 167
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.85 E-value=0.027 Score=44.67 Aligned_cols=55 Identities=15% Similarity=-0.050 Sum_probs=42.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------------------CCCceEEeCCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------------------ILGVTHIGGDTFKS 188 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------------------~~ri~~~~gd~f~~ 188 (199)
....+|++.|||.|.-+.-|++. ..+ ++.+|+ |..++.+.+ ..+|++..||||+-
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 34479999999999999999885 567 889998 444554311 26899999999983
No 168
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.71 E-value=0.017 Score=50.11 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=52.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC-C--C
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS-I--P 190 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~-~--P 190 (199)
.++..++ .....+|+|+|||+|..+..+++..|..+ .+.+|. +..++.++++ .++++..+|.... . +
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3444455 45558999999999999999999998777 899997 6666666542 2345577887652 1 2
Q ss_pred c--ccEEEe
Q 037818 191 A--ADAIFM 197 (199)
Q Consensus 191 ~--aD~~~l 197 (199)
. .|.+++
T Consensus 307 ~~~fD~Vll 315 (426)
T TIGR00563 307 NEQFDRILL 315 (426)
T ss_pred ccccCEEEE
Confidence 2 488875
No 169
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.70 E-value=0.014 Score=42.74 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCC--------C-CCceEEeCCCCC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPS--------I-LGVTHIGGDTFK 187 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~--------~-~ri~~~~gd~f~ 187 (199)
-.+..+|||+|+|.|.++..+... .|+++ ++.+|. |+.++.+.. . .++++..+++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 356789999999999999999982 38889 999996 444444432 1 567777776653
No 170
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.67 E-value=0.022 Score=49.55 Aligned_cols=73 Identities=11% Similarity=-0.032 Sum_probs=52.9
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-----C
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-----I 189 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-----~ 189 (199)
++..++ .....+|+|+|+|+|..+..+++... .-+ .+.+|. ++-++.++++ ++|+++.+|..+. .
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence 334454 44558999999999999999999864 456 899997 6666666542 5689999998752 1
Q ss_pred Cc--ccEEEe
Q 037818 190 PA--ADAIFM 197 (199)
Q Consensus 190 P~--aD~~~l 197 (199)
+. .|.|++
T Consensus 322 ~~~~fD~Vl~ 331 (434)
T PRK14901 322 WRGYFDRILL 331 (434)
T ss_pred ccccCCEEEE
Confidence 12 498886
No 171
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.66 E-value=0.024 Score=44.22 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=47.9
Q ss_pred cccccCchhHH----HHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhc
Q 037818 96 SYYGKMPEMNG----LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE 171 (199)
Q Consensus 96 e~~~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~ 171 (199)
+.+.++|+.-. -|++.+..|...+.+.+++.+..-.+...|.|.|||.+.++..+.+ ..+ +.-|||=..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~--- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP--- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S---
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC---
Confidence 34445555443 3566666666666677777654233446999999999999976542 346 778888443
Q ss_pred CCCCCCceEEeCCCCC-CCCcc--cEEEe
Q 037818 172 APSILGVTHIGGDTFK-SIPAA--DAIFM 197 (199)
Q Consensus 172 a~~~~ri~~~~gd~f~-~~P~a--D~~~l 197 (199)
+++ ..++|+-. |++.. |++++
T Consensus 105 ---n~~--Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 105 ---NPR--VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp ---STT--EEES-TTS-S--TT-EEEEEE
T ss_pred ---CCC--EEEecCccCcCCCCceeEEEE
Confidence 233 45688864 66663 87764
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.50 E-value=0.011 Score=46.10 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=51.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---------c
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---------A 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---------~ 191 (199)
..+.++||+||++.|.-+..+++..|. .+ .+-+|. |+..+.|+++ +||+++.||-.+-+| .
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 346789999999999999999999884 66 888887 6667777642 799999999875322 1
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
-|++++-
T Consensus 122 fD~VFiD 128 (205)
T PF01596_consen 122 FDFVFID 128 (205)
T ss_dssp EEEEEEE
T ss_pred eeEEEEc
Confidence 3888863
No 173
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.49 E-value=0.0067 Score=46.09 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.2
Q ss_pred HHHhhhCCCCC--CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHH
Q 037818 121 TSVLDGYNGFK--GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEV 168 (199)
Q Consensus 121 ~~~~~~~~~~~--~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v 168 (199)
..+.+.|+.+. +..++||+|+++|.|+..++++. +..+ ++.+|+...
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~ 59 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPM 59 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSST
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEecccc
Confidence 35556666333 45899999999999999999998 7788 999998655
No 174
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=95.49 E-value=0.0044 Score=37.27 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=30.7
Q ss_pred ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 7 ~iL~~l~~~~~~~t~~eia~~~gl--~~s--tv~r~L~tL~~~g 46 (52)
T PF09339_consen 7 RILEALAESGGPLTLSEIARALGL--PKS--TVHRLLQTLVEEG 46 (52)
T ss_dssp HHHHCHHCTBSCEEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCc
Confidence 45667764 56899999999999 555 8999999999877
No 175
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.063 Score=43.05 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=65.8
Q ss_pred HHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH-HCCCCCeeeeccc-hHHHhcCCCC------
Q 037818 108 MRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ-KHRFICEGINFDL-PEVVGEAPSI------ 175 (199)
Q Consensus 108 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~-~~P~l~~~~v~Dl-p~v~~~a~~~------ 175 (199)
|...|...++.. +..|+...+ .+...+|+|.|-|+|.++..|++ -.|.=+ .+.+|. ++-.+.|+++
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcc
Confidence 444466555543 335666666 77779999999999999999997 677788 888985 6667777653
Q ss_pred -CCceEEeCCCCCC-CCc-ccEEEe
Q 037818 176 -LGVTHIGGDTFKS-IPA-ADAIFM 197 (199)
Q Consensus 176 -~ri~~~~gd~f~~-~P~-aD~~~l 197 (199)
++|++..+|+.+. .+. .|++++
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L 169 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL 169 (256)
T ss_pred ccceEEEeccccccccccccCEEEE
Confidence 7799999999974 343 488876
No 176
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.42 E-value=0.022 Score=45.09 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=44.8
Q ss_pred hHHHHHHHHhc---cchhh-HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-HHhcCCC
Q 037818 104 MNGLMRKAMSG---VSVPF-ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVGEAPS 174 (199)
Q Consensus 104 ~~~~f~~~m~~---~~~~~-~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v~~~a~~ 174 (199)
.++.|...+-. |+.+. ...++...+ ....++++|+|||+|..+.+|-..--+++ .+|+.+ .++.|.+
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~lt---GvDiS~nMl~kA~e 165 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLT---GVDISENMLAKAHE 165 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhcc---CCchhHHHHHHHHh
Confidence 45567766643 22221 334455555 45589999999999999999988877777 688853 4555544
No 177
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.41 E-value=0.014 Score=49.43 Aligned_cols=51 Identities=16% Similarity=0.080 Sum_probs=42.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
.+++|++||+|.++..+.+... + ++.+|. ++.++.++++ ++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998874 6 889996 6777777753 579999999875
No 178
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.22 E-value=0.037 Score=48.13 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=58.6
Q ss_pred HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CC
Q 037818 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LG 177 (199)
Q Consensus 106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~r 177 (199)
..|..+.-.........+....+ .....+|+|+|+|+|..+..+++.. +.-+ ++.+|+ +.-++.++++ ++
T Consensus 212 ~~~~~G~~~~Qd~~s~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~ 289 (431)
T PRK14903 212 RVIKDGLATVQGESSQIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSS 289 (431)
T ss_pred hHHHCCeEEEECHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCe
Confidence 34544443332332223333444 4556799999999999999999886 4567 999998 5666665542 46
Q ss_pred ceEEeCCCCC-C--CCc-ccEEEe
Q 037818 178 VTHIGGDTFK-S--IPA-ADAIFM 197 (199)
Q Consensus 178 i~~~~gd~f~-~--~P~-aD~~~l 197 (199)
|+++.+|..+ + .+. .|.|++
T Consensus 290 v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 290 IEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred EEEEECchhhhhhhhhccCCEEEE
Confidence 8899999865 2 222 388875
No 179
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.21 E-value=0.054 Score=43.91 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCcccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPAADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~aD~~~l 197 (199)
-....+|+|+|+|+|..+..+++...+ -+ ++.+|. +..++.++++ .+|+++.+|... + .+..|+|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 344579999999999999999998764 45 899997 5666555532 568888888653 2 223588875
No 180
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.19 E-value=0.019 Score=48.69 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=41.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
.+|+|++||+|.++..+++... + ++.+|. +..++.++++ ++++++.+|.++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998865 5 888886 6677766653 589999999875
No 181
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.01 E-value=0.035 Score=45.77 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=27.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
+++ ++|+|||||.|.++..++++.|.. ++.+|-
T Consensus 114 L~g-k~VLDIGC~nGY~~frM~~~GA~~--ViGiDP 146 (315)
T PF08003_consen 114 LKG-KRVLDIGCNNGYYSFRMLGRGAKS--VIGIDP 146 (315)
T ss_pred cCC-CEEEEecCCCcHHHHHHhhcCCCE--EEEECC
Confidence 544 899999999999999999997763 577773
No 182
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.98 E-value=0.058 Score=49.81 Aligned_cols=77 Identities=16% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHHhhhCCCC-CCcceEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 037818 120 ITSVLDGYNGF-KGVKQLVDVGGSAGDCLRMILQKH----R--------------------------------------F 156 (199)
Q Consensus 120 ~~~~~~~~~~~-~~~~~vvDvGGG~G~~~~~l~~~~----P--------------------------------------~ 156 (199)
+..++..-. | .+...++|-.||+|+++++.+... | .
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 445555554 7 456899999999999999887631 1 2
Q ss_pred CCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc----ccEEEec
Q 037818 157 ICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA----ADAIFMK 198 (199)
Q Consensus 157 l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~----aD~~~l~ 198 (199)
.+ .+.+|. |..++.|+.+ ++|++..+|+++ +.|. .|+++.+
T Consensus 257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 35 788886 7888877753 679999999986 3331 3887654
No 183
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.94 E-value=1.1 Score=36.86 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=81.2
Q ss_pred HHHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCc
Q 037818 25 ILTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 102 (199)
Q Consensus 25 LA~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~ 102 (199)
|.+++|+..++.+ ...+|+-+.+...|=.++..++.....+.--.-|..|-+.|..+. +-| -++|
T Consensus 34 i~~~~Gi~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~~~~~~~e~~~li~~ltine-T~F------------FRd~ 100 (287)
T PRK10611 34 IYQRAGIVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLESNQNSAEWQAFINALTTNL-TAF------------FREA 100 (287)
T ss_pred HHHHHCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHhhCCC-CCc------------cCCc
Confidence 4467787333221 123455556666664555555554432211234777888887766 422 2333
Q ss_pred hhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC----CCCeeeeccc-hHHHhcCC
Q 037818 103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 103 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~~v~Dl-p~v~~~a~ 173 (199)
+.-+.+.+.+ ... .+.-+|...||++|. +++.+.+..+ +++ .+.-|+ +.+++.|+
T Consensus 101 ~~f~~L~~~~-----------~~~----~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar 164 (287)
T PRK10611 101 HHFPILAEHA-----------RRR----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKAR 164 (287)
T ss_pred HHHHHHHHHH-----------Hhc----CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHH
Confidence 3322232211 111 123589999999998 4444555443 355 777886 44554443
Q ss_pred C-------------------------------------CCCceEEeCCCCC-CCC--cc-cEEEecC
Q 037818 174 S-------------------------------------ILGVTHIGGDTFK-SIP--AA-DAIFMKW 199 (199)
Q Consensus 174 ~-------------------------------------~~ri~~~~gd~f~-~~P--~a-D~~~l~~ 199 (199)
+ ..+|+|..+|+++ ++| .. |+|+.+|
T Consensus 165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRN 231 (287)
T PRK10611 165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRN 231 (287)
T ss_pred hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhh
Confidence 1 0578999999998 455 23 9998764
No 184
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=94.88 E-value=0.046 Score=44.59 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=33.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
.++|||+|+|.|..+-++.+.+|++...+.+|. +..++.++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~ 75 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK 75 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence 479999999999999999999997776788886 44444443
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.84 E-value=0.047 Score=41.66 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=49.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC--------eeeeccc-hHHHhcCCCC-------CCceEEeCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC--------EGINFDL-PEVVGEAPSI-------LGVTHIGGDT 185 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~--------~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~ 185 (199)
.++..-. |.....|+|-=||+|+++++.+...++.. +.+..|. +..++.++++ ..|.+..+|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 4455555 77778999999999999998877666655 2678886 6777776653 5689999999
Q ss_pred CC-CCCc--ccEEEe
Q 037818 186 FK-SIPA--ADAIFM 197 (199)
Q Consensus 186 f~-~~P~--aD~~~l 197 (199)
++ +++. .|+++.
T Consensus 98 ~~l~~~~~~~d~Ivt 112 (179)
T PF01170_consen 98 RELPLPDGSVDAIVT 112 (179)
T ss_dssp GGGGGTTSBSCEEEE
T ss_pred hhcccccCCCCEEEE
Confidence 97 5444 388764
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.77 E-value=0.02 Score=46.04 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=51.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCC---------c
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIP---------A 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P---------~ 191 (199)
..+.+++|+||.+.|.-+..+++..| +-+ .+-+|. |+..+.|++ .++|+++.||..+-+| .
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 45678999999999999999999875 566 888887 566666664 2899999999876322 2
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
-|++++
T Consensus 156 ~fD~iFi 162 (247)
T PLN02589 156 TFDFIFV 162 (247)
T ss_pred cccEEEe
Confidence 388876
No 187
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.11 Score=40.45 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=51.0
Q ss_pred ccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccchHHHhcCCCCCCceEEeCCCCC
Q 037818 114 GVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDLPEVVGEAPSILGVTHIGGDTFK 187 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~ 187 (199)
+.+......+.+.|..+.+...|+|+|...|.++.-+.+.-.. .+ .+.+|+-+.-. .+.|.++.+||++
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~ 96 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITD 96 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccC
Confidence 3344444567777776788899999999999999977775554 55 88888754432 3558999999985
No 188
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.68 E-value=0.015 Score=45.14 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
.-++|||||.|.+++.|...||+.- .+.+++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEI 92 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTL-ILGMEI 92 (249)
T ss_pred ceEEeeccCccchhhhccccCccce-eeeehh
Confidence 5789999999999999999999999 888886
No 189
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=94.54 E-value=0.043 Score=41.60 Aligned_cols=56 Identities=14% Similarity=-0.120 Sum_probs=37.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC---------CCCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS---------ILGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~---------~~ri~~~~gd~f~ 187 (199)
.+.++||++|+|+|..++.+++.++..+ +++=|.|++++..+. ..++++...|.-+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGD 108 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS
T ss_pred cCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecC
Confidence 4458999999999999999999987778 999999988776543 1678888888755
No 190
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=94.31 E-value=0.045 Score=46.83 Aligned_cols=63 Identities=11% Similarity=-0.031 Sum_probs=48.7
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC---CcccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI---PAADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~---P~aD~~~l 197 (199)
.+|+|++||+|.++..+++..+..+ ++..|. |..++.++++ +.+++..+|..+-+ +..|++++
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence 5899999999999999999888667 999997 7778777653 45668888875422 22488876
No 191
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.27 E-value=0.078 Score=43.98 Aligned_cols=66 Identities=26% Similarity=0.177 Sum_probs=48.9
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK 187 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~ 187 (199)
...+++.+. -.....+||.==|.|.++.++++++|+.+ .+.+|. |.+++.+++. +|++++.++|-+
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 345666665 56667999999999999999999999988 999997 7888777642 899999999864
No 192
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.21 E-value=1.6 Score=35.52 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhh
Q 037818 40 LQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPF 119 (199)
Q Consensus 40 l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~ 119 (199)
.+|+-+.+...|-.++..++..+... ..-|..+-+++-.+. +.| -++|+.-..+. ...
T Consensus 28 ~~Rl~~~~~~~~~~~~~~y~~~l~~~--~~e~~~~l~~ltin~-T~F------------FR~~~~f~~l~-------~~v 85 (268)
T COG1352 28 YRRLSRRLRKLGLKNFEEYLNLLESD--SEELQAFLDALTINV-TEF------------FRDPEHFEELR-------DEV 85 (268)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHhCC--HHHHHHHHHHhhhcc-chh------------ccCcHHHHHHH-------HHH
Confidence 45666666666655566655544333 344666666665544 322 12333333332 112
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCCC-----CCeeeeccc-hHHHhcCCCC--------------
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHRF-----ICEGINFDL-PEVVGEAPSI-------------- 175 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P~-----l~~~~v~Dl-p~v~~~a~~~-------------- 175 (199)
.|.++..-. .+.-+|.-.||++|. +++.+.+..|. ++ .+.-|+ ..+++.|+.-
T Consensus 86 ~p~l~~~~~--~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~ 162 (268)
T COG1352 86 LPELVKRKK--GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPE 162 (268)
T ss_pred HHHHHhhcc--CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHH
Confidence 233433322 146789999999998 77788888874 55 677776 4556555420
Q ss_pred ---------------------CCceEEeCCCCCC--CCcc-cEEEecC
Q 037818 176 ---------------------LGVTHIGGDTFKS--IPAA-DAIFMKW 199 (199)
Q Consensus 176 ---------------------~ri~~~~gd~f~~--~P~a-D~~~l~~ 199 (199)
..|+|..+|++++ .+.. |+|+.+|
T Consensus 163 ~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRN 210 (268)
T COG1352 163 LLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRN 210 (268)
T ss_pred HHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcc
Confidence 4699999999974 3443 9999876
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.06 E-value=0.045 Score=42.57 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
......|+|.-||.|.|+..+++..+..+ ++..|+ |..++..++ .++|+...+|..+-.+. +|-++|.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~ 176 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN 176 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC
Confidence 34568999999999999999999888888 999998 677665554 27899999998874433 5888875
No 194
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.94 E-value=0.081 Score=41.20 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCCcc-eEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 130 FKGVK-QLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 130 ~~~~~-~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
+.... +||+||.|+|..+..+++++|+++ --==|.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~ 57 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDP 57 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCC
Confidence 34444 599999999999999999999998 433343
No 195
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.90 E-value=0.19 Score=39.03 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=38.9
Q ss_pred CcceEEEecCCccH--HHH--HHHHHC---C--CCCeeeeccc-hHHHhcCCCC--------------------------
Q 037818 132 GVKQLVDVGGSAGD--CLR--MILQKH---R--FICEGINFDL-PEVVGEAPSI-------------------------- 175 (199)
Q Consensus 132 ~~~~vvDvGGG~G~--~~~--~l~~~~---P--~l~~~~v~Dl-p~v~~~a~~~-------------------------- 175 (199)
+.-+|...||++|. |+. .+.+.. . +++ .+.-|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 55799999999998 444 444422 2 344 566776 5666666520
Q ss_pred --------CCceEEeCCCCC-CCCc-c-cEEEecC
Q 037818 176 --------LGVTHIGGDTFK-SIPA-A-DAIFMKW 199 (199)
Q Consensus 176 --------~ri~~~~gd~f~-~~P~-a-D~~~l~~ 199 (199)
.+|+|..+|+++ +.|. . |+|+.+|
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRN 144 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRN 144 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-S
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecC
Confidence 689999999999 3333 3 9999876
No 196
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=93.88 E-value=0.025 Score=33.18 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=32.0
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.++|.++.|||+.+|+ ++. .+.+=|+.|...|
T Consensus 4 R~~Il~~L~~~~~~~~el~~~l~~--s~~--~vs~hL~~L~~~g 43 (47)
T PF01022_consen 4 RLRILKLLSEGPLTVSELAEELGL--SQS--TVSHHLKKLREAG 43 (47)
T ss_dssp HHHHHHHHTTSSEEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCchhhHHHhccc--cch--HHHHHHHHHHHCc
Confidence 345667788899999999999999 655 7888888887665
No 197
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.77 E-value=0.15 Score=42.26 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=53.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~ 187 (199)
..+++.+. -.....+||.=.|.|..+.+++++.|+.+ .+.+|. |..++.+++. +|++++-++|-+
T Consensus 10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 45666665 45557999999999999999999998888 999997 7777777642 699999999874
No 198
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.59 E-value=0.093 Score=41.84 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=43.6
Q ss_pred ceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK 187 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~ 187 (199)
.+|+.||||.|-..--+++.+|+ ++ ..-+|. |..++..+++ .|+.....|+-.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS 133 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence 38999999999999999999999 88 899996 7777777654 567666777764
No 199
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=93.59 E-value=0.053 Score=34.53 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=34.3
Q ss_pred chhccccccccCC-CC--CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLAN-TP--LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~~-g~--~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...+-.|...|.+ |+ +|+.|||+.+|+ +.. .+.|+|..|...|
T Consensus 5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl--~~~--~v~r~L~~L~~~G 50 (68)
T smart00550 5 DSLEEKILEFLENSGDETSTALQLAKNLGL--PKK--EVNRVLYSLEKKG 50 (68)
T ss_pred hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3445566777764 55 999999999999 665 8999999998887
No 200
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=93.41 E-value=0.081 Score=42.16 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILG 177 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~r 177 (199)
++.+.++|||||+|.-++.+++.|.+ +|..|. +..++.+++.++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCC
Confidence 34569999999999888888887665 556786 677888887543
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.04 E-value=0.14 Score=39.14 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=47.1
Q ss_pred cceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC----C-CCceEEeCCCCCCCC-c-ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS----I-LGVTHIGGDTFKSIP-A-ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~----~-~ri~~~~gd~f~~~P-~-aD~~~l~ 198 (199)
.+.+++||||+|.....+.+. -|+.. ..--|+ |+.++...+ + .++..+..|++..+- . .|+.+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence 689999999999988777664 36666 677787 666665443 2 567888899997532 3 3888765
No 202
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=92.86 E-value=0.34 Score=38.95 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=55.9
Q ss_pred HHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH-HCCCCCeeeeccc-hHHHhcCCCC-----
Q 037818 107 LMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ-KHRFICEGINFDL-PEVVGEAPSI----- 175 (199)
Q Consensus 107 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~-~~P~l~~~~v~Dl-p~v~~~a~~~----- 175 (199)
.|...|...++.. +..|+...+ .....+||+.|.|+|.++..|++ -.|+=+ ..-+|. ++-.+.|+++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcC
Confidence 4556665555543 335666677 77779999999999999999997 457777 888886 5555555542
Q ss_pred --CCceEEeCCCCC-CCCc-----ccEEEe
Q 037818 176 --LGVTHIGGDTFK-SIPA-----ADAIFM 197 (199)
Q Consensus 176 --~ri~~~~gd~f~-~~P~-----aD~~~l 197 (199)
++|++..+|+.+ .++. +|.++|
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL 119 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL 119 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred CCCCceeEecceecccccccccCcccEEEE
Confidence 689999999974 3432 498886
No 203
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=92.71 E-value=0.41 Score=38.79 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=50.8
Q ss_pred ccccCchhHHHH----HHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcC
Q 037818 97 YYGKMPEMNGLM----RKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA 172 (199)
Q Consensus 97 ~~~~~~~~~~~f----~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a 172 (199)
.+.++|+.-..| +.....|-....+.+++.+..-++...|-|+|||.+.++. --..+ +.-|||-.+-+
T Consensus 141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~k-V~SfDL~a~~~-- 212 (325)
T KOG3045|consen 141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHK-VHSFDLVAVNE-- 212 (325)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccc-eeeeeeecCCC--
Confidence 344555544444 4444455555566677766422456789999999999887 22223 55677744322
Q ss_pred CCCCCceEEeCCCCC-CCCc--ccEEE
Q 037818 173 PSILGVTHIGGDTFK-SIPA--ADAIF 196 (199)
Q Consensus 173 ~~~~ri~~~~gd~f~-~~P~--aD~~~ 196 (199)
..+++||-+ |++. .|+.+
T Consensus 213 ------~V~~cDm~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 213 ------RVIACDMRNVPLEDESVDVAV 233 (325)
T ss_pred ------ceeeccccCCcCccCcccEEE
Confidence 334678876 5554 36654
No 204
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=92.70 E-value=0.026 Score=35.98 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.1
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .+..|..|||.++++ +++ .++.+|+.|+..|
T Consensus 5 i~~~l~~~~~~S~~eLa~~~~~--s~~--~ve~mL~~l~~kG 42 (69)
T PF09012_consen 5 IRDYLRERGRVSLAELAREFGI--SPE--AVEAMLEQLIRKG 42 (69)
T ss_dssp HHHHHHHS-SEEHHHHHHHTT----HH--HHHHHHHHHHCCT
T ss_pred HHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345554 478999999999999 777 9999999999999
No 205
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.62 E-value=0.14 Score=35.70 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=26.3
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
|-..+. -.....+||||||.|.+.--|.+ ...+ |..+|.
T Consensus 50 W~~~~~-~~~~~~FVDlGCGNGLLV~IL~~--EGy~-G~GiD~ 88 (112)
T PF07757_consen 50 WRDMYG-EQKFQGFVDLGCGNGLLVYILNS--EGYP-GWGIDA 88 (112)
T ss_pred HhcccC-CCCCCceEEccCCchHHHHHHHh--CCCC-cccccc
Confidence 444443 34567999999999998776654 3445 666774
No 206
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=92.54 E-value=0.24 Score=37.48 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=50.0
Q ss_pred hhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC
Q 037818 117 VPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK 187 (199)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~ 187 (199)
.+.++.+.+..+ |.+..-|+++|-|+|.+.++++++ .+.-. .+.++- |+-+....+ .+.++++.||-|+
T Consensus 34 s~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence 344567778888 999899999999999999999984 34444 444443 454444433 4788888888884
No 207
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.24 Score=38.79 Aligned_cols=67 Identities=21% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCCcceEEEecCCccHHHHHHHH--HCCCCCeeeeccc-hHHHhcCCCC----------------CCceEEeCCCCCCCC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQ--KHRFICEGINFDL-PEVVGEAPSI----------------LGVTHIGGDTFKSIP 190 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~--~~P~l~~~~v~Dl-p~v~~~a~~~----------------~ri~~~~gd~f~~~P 190 (199)
+....+.||||+|+|.+...+.. .-|... .+.+|+ |++++.++++ .++.++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 44557899999999998776664 334443 356775 8888777642 578899999887444
Q ss_pred c-c--cEEEe
Q 037818 191 A-A--DAIFM 197 (199)
Q Consensus 191 ~-a--D~~~l 197 (199)
+ + |.|..
T Consensus 159 e~a~YDaIhv 168 (237)
T KOG1661|consen 159 EQAPYDAIHV 168 (237)
T ss_pred ccCCcceEEE
Confidence 4 3 66653
No 208
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.35 E-value=0.19 Score=39.55 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=48.3
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-h----HHHhcCCC---CCCceEEeCCCCCCC-Cc--ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-P----EVVGEAPS---ILGVTHIGGDTFKSI-PA--ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p----~v~~~a~~---~~ri~~~~gd~f~~~-P~--aD~~~l 197 (199)
..+.||||-|+.+...+++.+|..+ ++.-|. | .++...+. .+||+.-.||-|.++ +. .|++++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 4499999999999999999999999 998886 3 33333333 389999999998763 33 266654
No 209
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.65 E-value=0.25 Score=38.04 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchH
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPE 167 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~ 167 (199)
.+-+.|..+....+|+|+|+..|.++.-..++. |+-. +..+|+-.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh 104 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLH 104 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeee
Confidence 344566645667899999999999999666655 9998 99999843
No 210
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=91.64 E-value=0.24 Score=39.04 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEe-CCCCC---C-CCc-ccE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIG-GDTFK---S-IPA-ADA 194 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~-gd~f~---~-~P~-aD~ 194 (199)
.++.+++|+||.+.|.-+..++..-| +-+ .|-+|. |+-.+.|+++ +||+... ||-.+ . ... -|+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 56789999999999999999999999 777 888897 6667777753 7788888 57664 2 122 388
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+|+-
T Consensus 136 iFID 139 (219)
T COG4122 136 VFID 139 (219)
T ss_pred EEEe
Confidence 8873
No 211
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=91.24 E-value=0.14 Score=34.03 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+.+|+ +.. .+.|.|..|...|
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i--~~~--tv~r~l~~L~~~g 48 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL--SKS--TAHRLLNTLQELG 48 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 456777764 68999999999999 665 8999999999988
No 212
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.07 E-value=0.55 Score=38.77 Aligned_cols=66 Identities=24% Similarity=0.156 Sum_probs=55.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~ 187 (199)
..+++.+. .......||.==|-|.++.++++++|++.+.+.+|. |..++.|++. +|++++-++|-+
T Consensus 13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 45566665 555589999999999999999999998887899997 7889888763 799999998764
No 213
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.61 E-value=0.11 Score=43.67 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=43.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH----HHhcCCCC---CCceEEeCCCCC---CCCcccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE----VVGEAPSI---LGVTHIGGDTFK---SIPAADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~----v~~~a~~~---~ri~~~~gd~f~---~~P~aD~~~l 197 (199)
|+- ++|||||-|.|.-+.++-.-+|+++.+++++... |++...++ .+..--+.|+-. ++|.+|.|.+
T Consensus 112 fap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 112 FAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred cCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence 443 6799999999999999999999999667777532 22222221 222222344442 5777787765
No 214
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=90.25 E-value=0.72 Score=35.79 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=44.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~aD~~~l~ 198 (199)
+-..++|+|.|-|+|..+++.+++--.- .+--|. |..+..++-+ -.|.+...|.-.+-|..|+++..
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~--v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~Lag 149 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAE--VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAG 149 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHH--HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEee
Confidence 6667999999999999998887754332 333333 5555444433 46788888887743445887754
No 215
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=89.89 E-value=0.12 Score=31.97 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=32.0
Q ss_pred hcccccccc-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRL-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.|...| .++|.|+.+||+.+|+ ++. .+.+=|+.|...|
T Consensus 11 ~R~~Il~~L~~~~~~t~~ela~~l~~--~~~--t~s~hL~~L~~aG 52 (61)
T PF12840_consen 11 TRLRILRLLASNGPMTVSELAEELGI--SQS--TVSYHLKKLEEAG 52 (61)
T ss_dssp HHHHHHHHHHHCSTBEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 456678888 6799999999999999 655 6777788777655
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=89.89 E-value=0.63 Score=35.97 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=46.3
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcccEEE
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAADAIF 196 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~aD~~~ 196 (199)
..+-|+|.|+|.++.-.+++ .=+ ++.+++ |...+-+.++ .+++.+.||-.+ .+-.||+++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence 47899999999998877766 334 777776 6666677664 789999999987 575578875
No 217
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=89.87 E-value=0.13 Score=30.10 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=28.6
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|+..|.+ +.+|..|||+.+|+ +.. .+.+.++-|...|
T Consensus 6 ~~Il~~l~~~~~~t~~ela~~~~i--s~~--tv~~~l~~L~~~g 45 (48)
T PF13412_consen 6 RKILNYLRENPRITQKELAEKLGI--SRS--TVNRYLKKLEEKG 45 (48)
T ss_dssp HHHHHHHHHCTTS-HHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCc
Confidence 345666654 67999999999999 554 8888888887654
No 218
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=89.79 E-value=0.42 Score=37.59 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=29.9
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
..+++|||-|.|.=+.-++=.+|+++ .|++|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles 99 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLES 99 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCc-EEEEcc
Confidence 58999999999998888889999999 999995
No 219
>KOG2730 consensus Methylase [General function prediction only]
Probab=89.76 E-value=0.17 Score=39.94 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=44.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK 187 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~ 187 (199)
+...|+|.-||-|.-.++.+..+|.+= .+|. |.-+..|+.+ +||+|+.||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~Vi---sIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVI---AIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEE---EEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 568999999999999999999999765 4564 7778888764 899999999996
No 220
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=89.66 E-value=0.16 Score=32.09 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=31.2
Q ss_pred cccccc-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRL-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|...| ..++.|+++||+.+|+ +.. .+.+.|+-|...|
T Consensus 12 ~vy~~Ll~~~~~t~~eIa~~l~i--~~~--~v~~~L~~L~~~G 50 (68)
T PF01978_consen 12 KVYLALLKNGPATAEEIAEELGI--SRS--TVYRALKSLEEKG 50 (68)
T ss_dssp HHHHHHHHHCHEEHHHHHHHHTS--SHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 344444 4699999999999999 655 8999999999888
No 221
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=89.46 E-value=0.22 Score=31.11 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+|.|..|||+.+|+ +.. .++++|..|...|
T Consensus 13 ~~p~~T~eiA~~~gl--s~~--~aR~yL~~Le~eG 43 (62)
T PF04703_consen 13 NGPLKTREIADALGL--SIY--QARYYLEKLEKEG 43 (62)
T ss_dssp TS-EEHHHHHHHHTS---HH--HHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 489999999999999 665 8999999999888
No 222
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=89.31 E-value=0.56 Score=35.97 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=42.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccch-H---HHhcCC---CCCCceEEeCCCCC-CCCc-ccEEEec
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLP-E---VVGEAP---SILGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~---v~~~a~---~~~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
+++|||.|-|.=++-++=.+|+++ ++++|-= . .++.+. ..++++.+.+..-+ ..+. .|+++.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEee
Confidence 799999999999999999999999 9999952 1 122111 13677777777665 2333 3777654
No 223
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=88.86 E-value=0.31 Score=32.12 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|.++||+++++ ++. .+++++..|...|
T Consensus 24 ~~~s~~eiA~~~~i--~~~--~l~kil~~L~~~G 53 (83)
T PF02082_consen 24 KPVSSKEIAERLGI--SPS--YLRKILQKLKKAG 53 (83)
T ss_dssp C-BEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHHHhhCC
Confidence 46999999999999 776 9999999999988
No 224
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=88.83 E-value=0.33 Score=34.82 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred ccccccc-c-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVR-L-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~-L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..++-. | .++|.|+++||+.++. +.. .++|-|+-|...|
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr--~rS--tv~rsl~~L~~~G 70 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR--SRS--TVYRSLQNLLEAG 70 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc--cHH--HHHHHHHHHHHcC
Confidence 3344444 4 3799999999999999 554 7889999998888
No 225
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=88.82 E-value=0.42 Score=38.81 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCcceEEEecCCccH---HHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCC--ceEEeCCCCCC
Q 037818 131 KGVKQLVDVGGSAGD---CLRMILQKHRFICEGINFDL-PEVVGEAPS----ILG--VTHIGGDTFKS 188 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~---~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~r--i~~~~gd~f~~ 188 (199)
.+...+||||+|.-+ .-.-..+..|+.+ ++-+|. |-|+..++. +++ ..++.+|+.++
T Consensus 67 ~GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 67 AGIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp T---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred cCcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 378999999999764 3334456799999 999996 888888875 244 89999999874
No 226
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=88.79 E-value=0.47 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=29.2
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|..++.|..+|++.+++ ++. .+.+.|+.|...|
T Consensus 4 ~~l~~~~~~~~~i~~~l~i--s~~--~v~~~l~~L~~~g 38 (66)
T smart00418 4 KLLAEGELCVCELAEILGL--SQS--TVSHHLKKLREAG 38 (66)
T ss_pred HHhhcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3444688999999999999 655 8899999999887
No 227
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=88.15 E-value=0.4 Score=38.60 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=31.9
Q ss_pred ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|+.|+..|
T Consensus 18 ~IL~~l~~~~~l~l~eia~~lgl--~ks--tv~Rll~tL~~~G 56 (257)
T PRK15090 18 GILQALGEEREIGITELSQRVMM--SKS--TVYRFLQTMKTLG 56 (257)
T ss_pred HHHHHhhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 35555653 67999999999999 665 8999999999999
No 228
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=88.01 E-value=0.42 Score=42.01 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRF 156 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~ 156 (199)
.+.+.+||||||.|.|+..+++++=-
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~V~ 141 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERNVT 141 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCCce
Confidence 46789999999999999999987643
No 229
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=87.95 E-value=0.38 Score=38.48 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=32.9
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ .+.|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl--pks--T~~RlL~tL~~~G 52 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL--TRA--AARRFLLTLVELG 52 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 346666753 68999999999999 655 8999999999999
No 230
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=87.74 E-value=0.61 Score=26.73 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.|..+||+.+++ +.. .+.+.|+.|...|
T Consensus 7 ~~~s~~~la~~l~~--s~~--tv~~~l~~L~~~g 36 (48)
T smart00419 7 LPLTRQEIAELLGL--TRE--TVSRTLKRLEKEG 36 (48)
T ss_pred eccCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 36899999999999 665 8999999998877
No 231
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=87.67 E-value=0.36 Score=38.73 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=32.5
Q ss_pred cccccccCCCC--CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLANTP--LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~g~--~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|..+| +++.|||+++|+ +.. .+.|+|..|+..|
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl--pks--T~~RlL~tL~~~G 47 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL--PKS--TVHRLLQTLVELG 47 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence 45677777544 569999999999 665 8999999999999
No 232
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=87.51 E-value=0.56 Score=28.36 Aligned_cols=26 Identities=8% Similarity=-0.075 Sum_probs=22.0
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCC
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILP 31 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~ 31 (199)
..|++.|.|+.=. ..|+.|||+.+|+
T Consensus 10 ~~A~~~GYfd~PR--~~tl~elA~~lgi 35 (53)
T PF04967_consen 10 KAAYELGYFDVPR--RITLEELAEELGI 35 (53)
T ss_pred HHHHHcCCCCCCC--cCCHHHHHHHhCC
Confidence 3688999998643 5899999999999
No 233
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=87.25 E-value=0.41 Score=38.42 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=45.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-----CCCceEEeCCCCCCCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-----ILGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-----~~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
...+|+|||||--=++.-.....|+.+ -+.+|.. ..++.... ..+.+..-.|++...|. +|+-+|
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 368999999999999998889999998 8999985 33333332 26778888899987665 587664
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=87.24 E-value=0.74 Score=37.94 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHH-------CCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCC-C-CC-
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQK-------HRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFK-S-IP- 190 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~-------~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~-~-~P- 190 (199)
-....+|+|-.||+|.++.++.+. .+..+ ...+|. |..+..++. ........+|.|. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 345578999999999999999885 57788 888997 455544432 1335688899985 2 32
Q ss_pred -c-ccEEEec
Q 037818 191 -A-ADAIFMK 198 (199)
Q Consensus 191 -~-aD~~~l~ 198 (199)
. .|+++++
T Consensus 123 ~~~~D~ii~N 132 (311)
T PF02384_consen 123 NQKFDVIIGN 132 (311)
T ss_dssp T--EEEEEEE
T ss_pred ccccccccCC
Confidence 2 4888764
No 235
>PRK11569 transcriptional repressor IclR; Provisional
Probab=87.12 E-value=0.41 Score=38.95 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=32.7
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+.+|+ +.. -+.|+|..|+..|
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl--pks--Tv~RlL~tL~~~G 71 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL--PNS--TTHRLLTTMQQQG 71 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345666654 68999999999999 655 8999999999999
No 236
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=86.98 E-value=0.42 Score=40.82 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=48.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC---c-ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP---A-ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P---~-aD~~~l 197 (199)
-+|||.-+|+|..++..+++-+..+.++..|. |..++.++++ +.+++..+|.+.-+. . .|++.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 48999999999999999999877765888997 7777777653 346777777775211 2 377765
No 237
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=86.44 E-value=0.49 Score=38.48 Aligned_cols=39 Identities=18% Similarity=0.039 Sum_probs=32.7
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl--pkS--tv~RlL~tL~~~G 68 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL--PLS--TTFRLLKVLQAAD 68 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 346666653 57999999999999 655 8999999999999
No 238
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=86.23 E-value=0.51 Score=30.88 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=31.8
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|=|.|.. |..++.+||..+++ +++ .++-+|..+++.|
T Consensus 7 lRd~l~~~gr~s~~~Ls~~~~~--p~~--~VeaMLe~l~~kG 44 (78)
T PRK15431 7 VRDLLALRGRMEAAQISQTLNT--PQP--MINAMLQQLESMG 44 (78)
T ss_pred HHHHHHHcCcccHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3456653 88999999999999 777 9999999999999
No 239
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.95 E-value=2.1 Score=36.57 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC----e----------------------------------eee
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC----E----------------------------------GIN 162 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~----~----------------------------------~~v 162 (199)
.+++..-. |.....++|-=||+|+++++.+...+++- + .+.
T Consensus 181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34554444 87778999999999999999988886422 1 346
Q ss_pred ccc-hHHHhcCCCC-------CCceEEeCCCCC-CCC-c-ccEEEec
Q 037818 163 FDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIP-A-ADAIFMK 198 (199)
Q Consensus 163 ~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P-~-aD~~~l~ 198 (199)
+|. |.+++.|+.+ +.|+|..+|+-+ +-| . -|+++.+
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 776 7778877754 779999999875 333 3 3887754
No 240
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=85.89 E-value=0.59 Score=29.53 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-++..|.+++.|..+||+.+|+ +.. .+.+-++.|.+.|
T Consensus 3 ~~il~~L~~~~~~~~eLa~~l~v--S~~--tv~~~l~~L~~~g 41 (69)
T TIGR00122 3 LRLLALLADNPFSGEKLGEALGM--SRT--AVNKHIQTLREWG 41 (69)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 34566788889999999999999 555 7888888887776
No 241
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=85.04 E-value=0.27 Score=28.45 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=19.0
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
+...+.+| .|+.+||+.+|+ +.. -+.|+|+
T Consensus 14 i~~l~~~G-~si~~IA~~~gv--sr~--TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYAEG-MSIAEIAKQFGV--SRS--TVYRYLN 43 (45)
T ss_dssp HHHHHHTT---HHHHHHHTTS---HH--HHHHHHC
T ss_pred HHHHHHCC-CCHHHHHHHHCc--CHH--HHHHHHh
Confidence 34445567 999999999999 443 5666653
No 242
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.04 E-value=0.29 Score=34.91 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred cchhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 4 NECREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 4 ~~A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+..-|.+.+.+ |..|+.|++..+|+ +-. .+.+.++-|++.|
T Consensus 10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa--sR~--Tvk~~lreLVa~G 54 (127)
T PF06163_consen 10 REELKARIVELVREHGRITIKQLVAKTGA--SRN--TVKRYLRELVARG 54 (127)
T ss_pred HHHHHHHHHHHHHHcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHcC
Confidence 34455566666764 99999999999999 655 8999999999999
No 243
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=84.81 E-value=1.2 Score=27.54 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 16 ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 16 ~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++.|..+||+.+|+ ++. .+.+.|+.|...|
T Consensus 22 ~~~~~s~~ela~~~g~--s~~--tv~r~l~~L~~~g 53 (67)
T cd00092 22 VQLPLTRQEIADYLGL--TRE--TVSRTLKELEEEG 53 (67)
T ss_pred ccCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3478999999999999 665 8999999998877
No 244
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=84.74 E-value=0.54 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.097 Sum_probs=30.5
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .+..|+++||+.+++ ++. -++|=|..|...|
T Consensus 5 Il~~l~~~~~~s~~ela~~~~V--S~~--TiRRDl~~L~~~g 42 (57)
T PF08220_consen 5 ILELLKEKGKVSVKELAEEFGV--SEM--TIRRDLNKLEKQG 42 (57)
T ss_pred HHHHHHHcCCEEHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345555 488999999999999 776 8899999998877
No 245
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=84.74 E-value=0.7 Score=24.84 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=21.5
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|+|-+|||+.+|+ .++ -+.|+|.-|...|
T Consensus 2 ~mtr~diA~~lG~--t~E--TVSR~l~~l~~~g 30 (32)
T PF00325_consen 2 PMTRQDIADYLGL--TRE--TVSRILKKLERQG 30 (32)
T ss_dssp E--HHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred CcCHHHHHHHhCC--cHH--HHHHHHHHHHHcC
Confidence 5788999999999 666 8899988876544
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=84.38 E-value=0.89 Score=40.13 Aligned_cols=56 Identities=25% Similarity=0.241 Sum_probs=42.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC------CCceEEeC---CCCC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI------LGVTHIGG---DTFK 187 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~------~ri~~~~g---d~f~ 187 (199)
...-+.++|+=||+|.++.++++..-.+- + +-+.|+.++.|+.+ .+++|+.| |.|.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~~Vi-G-vEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVKRVI-G-VEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccccee-e-eecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 44458999999999999999988766554 4 23458888888754 78899988 5654
No 247
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=84.32 E-value=0.96 Score=38.65 Aligned_cols=76 Identities=17% Similarity=0.240 Sum_probs=52.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHH---HCCCCCeeeeccchHHHhcCCC-------------CCCceEEeCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ---KHRFICEGINFDLPEVVGEAPS-------------ILGVTHIGGDT 185 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~---~~P~l~~~~v~Dlp~v~~~a~~-------------~~ri~~~~gd~ 185 (199)
.+.+.+. .......+|+|+|.|.....++. .-+.+- +-++|-|.-+..... ...++++.|+|
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG-~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVG-FEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccc-eeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 4555655 66678999999999996655544 444444 556666766665442 14588999999
Q ss_pred CCC------CCcccEEEecC
Q 037818 186 FKS------IPAADAIFMKW 199 (199)
Q Consensus 186 f~~------~P~aD~~~l~~ 199 (199)
..+ +++|+++++++
T Consensus 261 ~~~~~v~eI~~eatvi~vNN 280 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNN 280 (419)
T ss_pred CCHHHHHHHhhcceEEEEec
Confidence 964 55688888764
No 248
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=84.28 E-value=1.2 Score=35.94 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeee
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGI 161 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~ 161 (199)
+..++||||-|.|.....++..|.++. +|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~-aT 122 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVY-AT 122 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEE-ee
Confidence 347999999999999999999999887 54
No 249
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=84.20 E-value=0.6 Score=32.09 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=33.4
Q ss_pred hccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|.+ ++.|..+||+.+|+ ++. .+.+.++.|...|
T Consensus 4 ~D~~il~~L~~~~~~~~~~la~~l~~--s~~--tv~~~l~~L~~~g 45 (108)
T smart00344 4 IDRKILEELQKDARISLAELAKKVGL--SPS--TVHNRVKRLEEEG 45 (108)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 35566677764 78999999999999 776 8899999998877
No 250
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=83.15 E-value=1.1 Score=33.59 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=32.8
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|+++|. .+.+|-+|||..+|+ +.. .++++|..|...|
T Consensus 18 ~Vl~aL~~~~~~tdEeLa~~Lgi--~~~--~VRk~L~~L~e~~ 56 (158)
T TIGR00373 18 LVLFSLGIKGEFTDEEISLELGI--KLN--EVRKALYALYDAG 56 (158)
T ss_pred HHHHHHhccCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 4677776 689999999999999 655 8999999999988
No 251
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=83.13 E-value=0.8 Score=34.96 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=32.5
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.|.. |++|.++||..+|+ +.. .++++|..|...|
T Consensus 27 Vl~~L~~~g~~tdeeLA~~Lgi--~~~--~VRk~L~~L~e~g 64 (178)
T PRK06266 27 VLKALIKKGEVTDEEIAEQTGI--KLN--TVRKILYKLYDAR 64 (178)
T ss_pred HHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 6677765 89999999999999 655 8999999999988
No 252
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=83.02 E-value=0.51 Score=36.14 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=44.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~~~l 197 (199)
.++||+=+|+|.++.+.+.+.-. + ++.+|. +..+...+++ ++++.+.+|.+..+ .. .|+|++
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~-~-v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK-S-VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S-E-EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CeEEEcCCccCccHHHHHhcCCC-e-EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 79999999999999999887733 4 788886 5666666543 57899999977522 23 399886
No 253
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=82.99 E-value=1.1 Score=27.89 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=31.1
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|.+++.+..+|++.+++ +.. .+.+.|+.|.+.|
T Consensus 10 ~~il~~l~~~~~~~~ei~~~~~i--~~~--~i~~~l~~L~~~g 48 (78)
T cd00090 10 LRILRLLLEGPLTVSELAERLGL--SQS--TVSRHLKKLEEAG 48 (78)
T ss_pred HHHHHHHHHCCcCHHHHHHHHCc--CHh--HHHHHHHHHHHCC
Confidence 34555555556999999999999 665 8899999998887
No 254
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=82.46 E-value=1.4 Score=31.40 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|.++||+.+++ ++. .++++|+.|...|
T Consensus 24 ~~~s~~eia~~~~i--~~~--~v~~il~~L~~~g 53 (132)
T TIGR00738 24 GPVSVKEIAERQGI--SRS--YLEKILRTLRRAG 53 (132)
T ss_pred CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 48999999999999 766 9999999999988
No 255
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.13 E-value=1.3 Score=32.96 Aligned_cols=63 Identities=19% Similarity=0.173 Sum_probs=43.6
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK 187 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~ 187 (199)
.++...+ -....+++|+|.|.|....+.++.. -.+ ++.++| |..+.-++- ..+.+|.--|+|+
T Consensus 63 nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 63 NVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 4444443 2334799999999999988888766 455 778887 555555542 1667777788875
No 256
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=82.01 E-value=2.9 Score=33.10 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=52.2
Q ss_pred ccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-----CCceEEeCCC
Q 037818 114 GVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-----LGVTHIGGDT 185 (199)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-----~ri~~~~gd~ 185 (199)
.+.++.....+++. .++..+||.||=|-|.....+.++.|+.+ -|+---|.|...-+.. ++|....|-.
T Consensus 85 ~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~W 158 (271)
T KOG1709|consen 85 RWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRW 158 (271)
T ss_pred hhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecch
Confidence 33343333444443 47779999999999999999999999999 9999999999987753 5666666533
No 257
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=81.87 E-value=1.5 Score=31.64 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+++||+++++ ++. .++++|+.|...|
T Consensus 24 ~~~s~~~ia~~~~i--p~~--~l~kil~~L~~~g 53 (135)
T TIGR02010 24 GPVTLADISERQGI--SLS--YLEQLFAKLRKAG 53 (135)
T ss_pred CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 58999999999999 776 9999999999988
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=81.74 E-value=2.3 Score=33.22 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=31.7
Q ss_pred CcceEEEecCCc---cHHHHHHHHHC-CCCCeeeeccc--hHHHhcCCC----CCCceEEeCCCCC
Q 037818 132 GVKQLVDVGGSA---GDCLRMILQKH-RFICEGINFDL--PEVVGEAPS----ILGVTHIGGDTFK 187 (199)
Q Consensus 132 ~~~~vvDvGGG~---G~~~~~l~~~~-P~l~~~~v~Dl--p~v~~~a~~----~~ri~~~~gd~f~ 187 (199)
+..+|+.+|--+ -.+...+++.+ ++.+ ++.+|. +..-..+.+ .+||+++.||--+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 458999999544 44666677777 8888 999998 222222222 3999999999875
No 259
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=80.87 E-value=1.5 Score=26.17 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=26.6
Q ss_pred cccc--CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 12 KVRL--ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 12 f~~L--~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...| .+++.|.++||+.+++ +.. -+.+-+..|...|
T Consensus 6 l~~L~~~~~~it~~eLa~~l~v--S~r--Ti~~~i~~L~~~~ 43 (55)
T PF08279_consen 6 LKLLLESKEPITAKELAEELGV--SRR--TIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHTTTSBEHHHHHHHCTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 3445 3467999999999999 655 7788888777655
No 260
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=80.85 E-value=1.5 Score=34.61 Aligned_cols=37 Identities=22% Similarity=0.173 Sum_probs=31.4
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|. .+|.|+.|||+++|+ ++. .+++=|..|++.|
T Consensus 16 il~lL~~~g~~sa~elA~~Lgi--s~~--avR~HL~~Le~~G 53 (218)
T COG2345 16 ILELLKKSGPVSADELAEELGI--SPM--AVRRHLDDLEAEG 53 (218)
T ss_pred HHHHHhccCCccHHHHHHHhCC--CHH--HHHHHHHHHHhCc
Confidence 334444 599999999999999 776 8999999999999
No 261
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=80.77 E-value=1.1 Score=36.16 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=32.3
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+.+|+ +.. .+.|+|..|+..|
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl--~ks--tv~RlL~tL~~~g 54 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL--HRT--TVRRLLETLQEEG 54 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345666653 56999999999999 655 8999999999999
No 262
>PHA02943 hypothetical protein; Provisional
Probab=80.76 E-value=1.3 Score=32.73 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=30.9
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+.|..|..|..|||+++|+ +-. .++-.|..|...|
T Consensus 16 ILE~Lk~G~~TtseIAkaLGl--S~~--qa~~~LyvLErEG 52 (165)
T PHA02943 16 TLRLLADGCKTTSRIANKLGV--SHS--MARNALYQLAKEG 52 (165)
T ss_pred HHHHHhcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHcC
Confidence 445566799999999999999 544 7888899999999
No 263
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=80.70 E-value=1.8 Score=30.94 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|+.+||+++++ ++. .+.++|+.|...|
T Consensus 23 ~~~~s~~eia~~l~i--s~~--~v~~~l~~L~~~G 53 (130)
T TIGR02944 23 SQPYSAAEIAEQTGL--NAP--TVSKILKQLSLAG 53 (130)
T ss_pred CCCccHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 467999999999999 666 9999999999999
No 264
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=80.29 E-value=1.7 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+++||+++++ ++. .+.++|..|...|
T Consensus 24 ~~vs~~eIA~~~~i--p~~--~l~kIl~~L~~aG 53 (164)
T PRK10857 24 GPVPLADISERQGI--SLS--YLEQLFSRLRKNG 53 (164)
T ss_pred CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 68999999999999 766 9999999999999
No 265
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=80.27 E-value=0.99 Score=34.34 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC---------CCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI---------LGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~---------~ri~~~~gd~f~ 187 (199)
.+...||-+|+|-=.....+...+++++ .+=+|+|+|++.-++. ...+++++|+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 4566999999999999999999889899 9999999998765431 236789999985
No 266
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=79.36 E-value=3.3 Score=29.36 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=34.9
Q ss_pred hccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.|+..|.+ ++.++.||++.+++ .+. .+.+=|+.|...|
T Consensus 17 tRl~IL~~L~~~~~~~v~ela~~l~l--sqs--tvS~HL~~L~~AG 58 (117)
T PRK10141 17 TRLGIVLLLRESGELCVCDLCTALDQ--SQP--KISRHLALLRESG 58 (117)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45677888864 78999999999999 665 8889999999998
No 267
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=79.21 E-value=1.4 Score=31.73 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=24.3
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...|++ +|.|+.|+|+.+|- ++. .+.|-|+.|...|
T Consensus 69 Ll~~Ia~~~P~Si~ElAe~vgR--dv~--nvhr~Ls~l~~~G 106 (144)
T COG4190 69 LLELIAQEEPASINELAELVGR--DVK--NVHRTLSTLADLG 106 (144)
T ss_pred HHHHHHhcCcccHHHHHHHhCc--chH--HHHHHHHHHHhcC
Confidence 3444543 67777777777777 444 7777777777666
No 268
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=79.06 E-value=6.5 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=24.1
Q ss_pred ceEEEecCCccHHHHHHHHHC--------------------CCCCeeeeccch
Q 037818 134 KQLVDVGGSAGDCLRMILQKH--------------------RFICEGINFDLP 166 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~--------------------P~l~~~~v~Dlp 166 (199)
.+||.||||.|.=..+++..+ |.+. .+++|..
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiA 139 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIA 139 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEec
Confidence 699999999998665555554 3467 8889873
No 269
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=78.96 E-value=1 Score=37.11 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----------CCCceEEeCCCCC---CCCc--cc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----------ILGVTHIGGDTFK---SIPA--AD 193 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----------~~ri~~~~gd~f~---~~P~--aD 193 (199)
..+++.++-||||.|-+.+...+. +.+....++|.. .|++..++ .+||+.+.||=|. ..++ -|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 356789999999999999999987 888867888865 55555554 2899999998663 4444 38
Q ss_pred EEEe
Q 037818 194 AIFM 197 (199)
Q Consensus 194 ~~~l 197 (199)
+++.
T Consensus 198 Vii~ 201 (337)
T KOG1562|consen 198 VIIT 201 (337)
T ss_pred EEEE
Confidence 8775
No 270
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=78.72 E-value=1.8 Score=38.61 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=37.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC--------CCeeeeccc-hHHHhcCCCC----C--CceEEeCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRF--------ICEGINFDL-PEVVGEAPSI----L--GVTHIGGDTF 186 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~--------l~~~~v~Dl-p~v~~~a~~~----~--ri~~~~gd~f 186 (199)
...+|+|.+||+|.++.+++++.+. +. .+.+|. |..+..++.+ . .+....+|+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l 99 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSL 99 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccc
Confidence 4569999999999999999998864 34 677886 4555544421 2 3555556655
No 271
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=78.47 E-value=4.6 Score=37.12 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=45.2
Q ss_pred cCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCee
Q 037818 100 KMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEG 160 (199)
Q Consensus 100 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~ 160 (199)
+||-.+..-.-.++..+....+.++..++ -.+.-.+-+|-|+|.....+++.||..+ +
T Consensus 292 qnPlISGLR~~Q~ATGAHYKlRsIL~~~~--i~~~d~l~~GDGSGGita~lLR~~p~sr-~ 349 (675)
T PF14314_consen 292 QNPLISGLRLFQLATGAHYKLRSILKNLN--IKYRDALCGGDGSGGITACLLRMNPTSR-G 349 (675)
T ss_pred cCcchhhhhhhcccccchhhHHHHHHhcC--CCcceeEEEecCchHHHHHHHHhCcccc-e
Confidence 46666655555666677777889998876 2335568899999999999999999999 7
No 272
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=78.42 E-value=1.3 Score=27.48 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=27.6
Q ss_pred ccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 12 KVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 12 f~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...|. +++.|..+||+.+++ +.. .+.+.++-|...|
T Consensus 9 L~~l~~~~~~~t~~~l~~~~~~--~~~--~vs~~i~~L~~~g 46 (68)
T PF13463_consen 9 LRALAHSDGPMTQSDLAERLGI--SKS--TVSRIIKKLEEKG 46 (68)
T ss_dssp HHHHT--TS-BEHHHHHHHTT----HH--HHHHHHHHHHHTT
T ss_pred HHHHHccCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 34455 589999999999999 655 8999999999988
No 273
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=78.26 E-value=3 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|+.+|++.+++ ++. .+.+.|..|...|
T Consensus 12 ~~~~s~~~l~~~l~~--s~~--tv~~~l~~L~~~g 42 (53)
T smart00420 12 QGKVSVEELAELLGV--SEM--TIRRDLNKLEEQG 42 (53)
T ss_pred cCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 467999999999999 666 8899999888766
No 274
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=78.10 E-value=1.5 Score=26.71 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 20 LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|+.+||+.+++ ++. .+.++++.|...|
T Consensus 22 ~t~~~la~~l~~--~~~--~vs~~v~~L~~~G 49 (62)
T PF12802_consen 22 LTQSELAERLGI--SKS--TVSRIVKRLEKKG 49 (62)
T ss_dssp EEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred cCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 899999999999 665 8999999999887
No 275
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=78.10 E-value=1.8 Score=28.75 Aligned_cols=40 Identities=25% Similarity=0.217 Sum_probs=32.6
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++-++..|. .++.|..+||+.+++ ++. .+.+.++-|+..|
T Consensus 12 ~~~il~~l~~~~~~~~~~la~~~~~--s~~--~i~~~l~~L~~~g 52 (101)
T smart00347 12 QFLVLRILYEEGPLSVSELAKRLGV--SPS--TVTRVLDRLEKKG 52 (101)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC--Cch--hHHHHHHHHHHCC
Confidence 445566665 367999999999999 665 8999999999888
No 276
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=76.90 E-value=1.6 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.3
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...|.+ ++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 8 iL~~l~~~~~~~~~~la~~~~~--~~~--~~t~~i~~L~~~g 45 (59)
T PF01047_consen 8 ILRILYENGGITQSELAEKLGI--SRS--TVTRIIKRLEKKG 45 (59)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 3344443 78999999999999 665 8999999999887
No 277
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=76.51 E-value=2.8 Score=33.04 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=36.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----CCCc-eEEeCCCCCCCCc--c-cEEEecC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----ILGV-THIGGDTFKSIPA--A-DAIFMKW 199 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----~~ri-~~~~gd~f~~~P~--a-D~~~l~~ 199 (199)
+..+.||+|+|.|.....++-.+ .+++-++|- +.-++.|++ ..++ ++...-+=+-.|+ . |+|++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 46899999999999999887543 342445553 666666663 2343 3333333333454 3 9999876
No 278
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=76.45 E-value=2.8 Score=35.22 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=37.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------------CCceEEeCCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------------LGVTHIGGDTFK 187 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------------~ri~~~~gd~f~ 187 (199)
...+|||+|||.|.-+....++ .+++.+.+|. ++.|+.|++. =...|+.+|-|.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence 5689999999999998888876 4554688998 4556666531 135778898884
No 279
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=76.31 E-value=2.1 Score=37.31 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=47.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC--C-CC--c-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK--S-IP--A-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~--~-~P--~-aD~~~ 196 (199)
..+..+|+|+=||.|.|+..|+++.-. ++.++. |+.++.|+++ ++++|..+|-.+ + +. . .|+++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~~~---V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv 367 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRVKK---VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV 367 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccCCE---EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEE
Confidence 345579999999999999999955444 556665 6777777653 669999999885 2 22 2 38777
Q ss_pred e
Q 037818 197 M 197 (199)
Q Consensus 197 l 197 (199)
+
T Consensus 368 v 368 (432)
T COG2265 368 V 368 (432)
T ss_pred E
Confidence 5
No 280
>PRK10742 putative methyltransferase; Provisional
Probab=76.24 E-value=4.5 Score=32.60 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=52.3
Q ss_pred HHHhhhCCCCCCcc--eEEEecCCccHHHHHHHHHCCCCCeeeeccchHHH--------hcCC------C-C-CCceEEe
Q 037818 121 TSVLDGYNGFKGVK--QLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV--------GEAP------S-I-LGVTHIG 182 (199)
Q Consensus 121 ~~~~~~~~~~~~~~--~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~--------~~a~------~-~-~ri~~~~ 182 (199)
+.++++.. ..+.. +|||+=.|.|..+..++.+ ..+ ++.++.-.++ +.+. . . .|++.+.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46677765 55544 9999999999999999988 777 8899974332 2221 1 1 5799999
Q ss_pred CCCCCC---CCc-ccEEEe
Q 037818 183 GDTFKS---IPA-ADAIFM 197 (199)
Q Consensus 183 gd~f~~---~P~-aD~~~l 197 (199)
+|..+. .+. .|+|++
T Consensus 152 ~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYL 170 (250)
T ss_pred CcHHHHHhhCCCCCcEEEE
Confidence 998863 344 499886
No 281
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=76.07 E-value=4.7 Score=32.71 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=32.1
Q ss_pred CCCCcceEEEecCCccHHHHHHHHHC-----CCCCeeeeccch
Q 037818 129 GFKGVKQLVDVGGSAGDCLRMILQKH-----RFICEGINFDLP 166 (199)
Q Consensus 129 ~~~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~~v~Dlp 166 (199)
.+.+...+|+.|+|.|.++..+.+.. +..+ .+++|+-
T Consensus 15 ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~-~~lIDR~ 56 (259)
T PF05206_consen 15 LLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSR-FVLIDRA 56 (259)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHhhhcccCCcc-EEEEecC
Confidence 36677899999999999999999998 5677 8999984
No 282
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=76.02 E-value=0.88 Score=28.67 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=29.4
Q ss_pred CCCcchhccccccccCC------CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 1 MEDNECREGGKKVRLAN------TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 1 ~~~~~A~~lglf~~L~~------g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.+.-..-|++.|.+ -|-|+.|||+.+|+ . .+..+.+-|..|...|
T Consensus 1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~--~-S~~tv~~~L~~Le~kG 54 (65)
T PF01726_consen 1 MKELTERQKEVLEFIREYIEENGYPPTVREIAEALGL--K-STSTVQRHLKALERKG 54 (65)
T ss_dssp -----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTS--S-SHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC--C-ChHHHHHHHHHHHHCc
Confidence 44444555556666642 47799999999999 4 2238889999998877
No 283
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=73.07 E-value=2.9 Score=30.89 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+++||++.++ ++. .|.++|..|...|
T Consensus 24 ~~~s~~~IA~~~~i--s~~--~L~kil~~L~kaG 53 (150)
T COG1959 24 GPVSSAEIAERQGI--SPS--YLEKILSKLRKAG 53 (150)
T ss_pred CcccHHHHHHHhCc--CHH--HHHHHHHHHHHcC
Confidence 38999999999999 776 9999999999999
No 284
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=73.05 E-value=2.8 Score=29.29 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=31.6
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++..|. .++.|..+||+.+++ +.. .+.++++-|...|
T Consensus 32 ~iL~~l~~~~~~t~~ela~~~~~--~~~--tvs~~l~~Le~~G 70 (118)
T TIGR02337 32 RILRILAEQGSMEFTQLANQACI--LRP--SLTGILARLERDG 70 (118)
T ss_pred HHHHHHHHcCCcCHHHHHHHhCC--Cch--hHHHHHHHHHHCC
Confidence 3555554 478999999999999 666 8999999999999
No 285
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=73.04 E-value=3.7 Score=35.11 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=37.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHC---CCCCeeeeccchH
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKH---RFICEGINFDLPE 167 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~~v~Dlp~ 167 (199)
...|++++. -.+.-+|||+|-|.|. +..+|+++. |+++ .|.++.|.
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~Lr-IT~i~~~~ 151 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLR-ITGIGPPN 151 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEE-EEeccCCC
Confidence 457888876 5566899999999998 666777764 8899 99999964
No 286
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=72.97 E-value=7.3 Score=33.11 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC
Q 037818 101 MPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH 154 (199)
Q Consensus 101 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~ 154 (199)
-|+....|-+.++. +..+.| +.+. -...-.+|.||.|+|.++.-+++..
T Consensus 51 Apels~lFGella~---~~~~~w-q~~g-~p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 51 APELSQLFGELLAE---QFLQLW-QELG-RPAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred chhHHHHHHHHHHH---HHHHHH-HHhc-CCCCceEEEeCCCcChHHHHHHHHH
Confidence 46788888877642 222222 2222 3345689999999999888877644
No 287
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=72.90 E-value=13 Score=33.38 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=58.2
Q ss_pred ccccccCchhHHHHHHHHhccchhhHHHHhhhCCCC--CCcceEEEecCCccHHHHHHHHHCC----CCCeeeeccc-hH
Q 037818 95 YSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGF--KGVKQLVDVGGSAGDCLRMILQKHR----FICEGINFDL-PE 167 (199)
Q Consensus 95 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~~v~Dl-p~ 167 (199)
|+.+++||-.-..|.+|.- .++.+..+.- +....|.-+|||.|=+..+.+++-. .++ .+.++- |.
T Consensus 335 YetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKNPN 406 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKNPN 406 (649)
T ss_pred hhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecCcc
Confidence 6778888877777776642 3344433311 2356788899999998887776433 333 444442 54
Q ss_pred HHhcCCC------CCCceEEeCCCCCCCC--c-ccEEE
Q 037818 168 VVGEAPS------ILGVTHIGGDTFKSIP--A-ADAIF 196 (199)
Q Consensus 168 v~~~a~~------~~ri~~~~gd~f~~~P--~-aD~~~ 196 (199)
.+-..+. ..||+.+.+||-+..| + +|+++
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV 444 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH
Confidence 4333322 1799999999998544 2 58753
No 288
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=72.66 E-value=5.9 Score=29.98 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=28.3
Q ss_pred ccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 14 RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 14 ~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|..+|+|++||++.+|+ +-. .+..-|+-|...+
T Consensus 36 yls~~Pmtl~Ei~E~lg~--Sks--~vS~~lkkL~~~~ 69 (177)
T COG1510 36 YLSRKPLTLDEIAEALGM--SKS--NVSMGLKKLQDWN 69 (177)
T ss_pred eecCCCccHHHHHHHHCC--Ccc--hHHHHHHHHHhcc
Confidence 345799999999999999 433 7888888888888
No 289
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=72.65 E-value=3.6 Score=32.33 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+.|++|+|+.+|+ +-- -.+|-|.+|++.|
T Consensus 171 ~~~~Taeela~~~gi--SRv--TaRRYLeyl~~~~ 201 (224)
T COG4565 171 DQELTAEELAQALGI--SRV--TARRYLEYLVSNG 201 (224)
T ss_pred CCccCHHHHHHHhCc--cHH--HHHHHHHHHHhcC
Confidence 478999999999999 433 7899999999988
No 290
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=72.63 E-value=2 Score=28.02 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=19.4
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
++..|++ .|.|+++||+.+|. +.+ .+...|..+
T Consensus 29 LLr~LA~G~PVt~~~LA~a~g~--~~e--~v~~~L~~~ 62 (77)
T PF12324_consen 29 LLRLLAKGQPVTVEQLAAALGW--PVE--EVRAALAAM 62 (77)
T ss_dssp HHHHHTTTS-B-HHHHHHHHT----HH--HHHHHHHH-
T ss_pred HHHHHHcCCCcCHHHHHHHHCC--CHH--HHHHHHHhC
Confidence 4556665 69999999999999 433 555555544
No 291
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=72.14 E-value=2.3 Score=32.91 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=31.1
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|. .++.|..+||+.+|+ ++. .+.+.|+.|...|
T Consensus 6 IL~~L~~~~~~t~~eLA~~lgi--s~~--tV~~~L~~Le~~G 43 (203)
T TIGR02702 6 ILSYLLKQGQATAAALAEALAI--SPQ--AVRRHLKDLETEG 43 (203)
T ss_pred HHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 444453 588999999999999 666 8999999999998
No 292
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=72.09 E-value=3.2 Score=30.97 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=33.0
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++..|...|. ++..|..+||+++|+ ++. .+.+=++-|...|
T Consensus 15 ~D~~IL~~Lq~d~R~s~~eiA~~lgl--S~~--tv~~Ri~rL~~~G 56 (164)
T PRK11169 15 IDRNILNELQKDGRISNVELSKRVGL--SPT--PCLERVRRLERQG 56 (164)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4566777886 589999999999999 665 6777777787777
No 293
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=72.08 E-value=2.2 Score=29.03 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=30.4
Q ss_pred hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+.+.||+..|-++++|-.|||+.+|+ +.. .+.|.=+.|.
T Consensus 42 ~~R~~i~~~Ll~~~~tQrEIa~~lGi--S~a--tIsR~sn~lk 80 (94)
T TIGR01321 42 GDRIRIVNELLNGNMSQREIASKLGV--SIA--TITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCC--Chh--hhhHHHhhcc
Confidence 45778888887789999999999999 544 5666655554
No 294
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=71.99 E-value=2.6 Score=31.05 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=33.7
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++..|.+.|. ++..|..+||+++|+ ++. .+.+=++-|...|
T Consensus 10 ~D~~Il~~Lq~d~R~s~~eiA~~lgl--S~~--tV~~Ri~rL~~~G 51 (153)
T PRK11179 10 LDRGILEALMENARTPYAELAKQFGV--SPG--TIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4566777775 589999999999999 666 7888888888888
No 295
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=71.49 E-value=4.3 Score=30.06 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+.|+++||++.++ ++. .++++|..|...|
T Consensus 22 ~~~~s~~eIA~~~~i--s~~--~L~kIl~~L~~aG 52 (153)
T PRK11920 22 GKLSRIPEIARAYGV--SEL--FLFKILQPLVEAG 52 (153)
T ss_pred CCcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 357899999999999 766 9999999999999
No 296
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=71.10 E-value=4.5 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.0
Q ss_pred CC-CHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PL-SASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~-t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+ |..+||+.+++ +.. .+++.+..|...|
T Consensus 19 ~l~s~~~la~~~~v--s~~--tv~~~l~~L~~~g 48 (60)
T smart00345 19 KLPSERELAAQLGV--SRT--TVREALSRLEAEG 48 (60)
T ss_pred cCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 45 89999999999 655 8999999998877
No 297
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=70.99 E-value=5.6 Score=31.93 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--------CCceEEeCCCCC---CCCc-c-cEEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--------LGVTHIGGDTFK---SIPA-A-DAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--------~ri~~~~gd~f~---~~P~-a-D~~~ 196 (199)
++..+|+|.=+|-|..+++.+++--..= .++-=-|.|++.|+-+ .+|+.+-||-++ .++. . |+++
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~V-itvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHV-ITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEE-EEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4568999999999999999999877443 4566679999988754 478999999986 4665 2 7765
No 298
>PF13518 HTH_28: Helix-turn-helix domain
Probab=70.91 E-value=3.7 Score=23.85 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+|- |+.++|+..|+ ++. .+.+|++.....|
T Consensus 11 ~g~-s~~~~a~~~gi--s~~--tv~~w~~~y~~~G 40 (52)
T PF13518_consen 11 EGE-SVREIAREFGI--SRS--TVYRWIKRYREGG 40 (52)
T ss_pred cCC-CHHHHHHHHCC--CHh--HHHHHHHHHHhcC
Confidence 454 99999999999 766 8899988776655
No 299
>PRK01381 Trp operon repressor; Provisional
Probab=70.77 E-value=2.4 Score=29.02 Aligned_cols=39 Identities=15% Similarity=-0.036 Sum_probs=30.8
Q ss_pred hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+.+++|+..|-+|.+|-.|||+.+|+ +.. .+.|-=++|-
T Consensus 42 ~~R~~I~~~L~~g~~sQREIa~~lGv--Sia--TITRgsn~Lk 80 (99)
T PRK01381 42 GTRVRIVEELLRGELSQREIKQELGV--GIA--TITRGSNSLK 80 (99)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHhCC--cee--eehhhHHHhc
Confidence 56788999998999999999999999 544 5566555554
No 300
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=70.45 E-value=8.8 Score=31.94 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=37.9
Q ss_pred ecCCccH----HHHHHHHHCCCCCeeeeccc------hHHHhcCCCCCCceEEeCCCCC
Q 037818 139 VGGSAGD----CLRMILQKHRFICEGINFDL------PEVVGEAPSILGVTHIGGDTFK 187 (199)
Q Consensus 139 vGGG~G~----~~~~l~~~~P~l~~~~v~Dl------p~v~~~a~~~~ri~~~~gd~f~ 187 (199)
|=||.|. |.+.+++.+|+.+ ++++|- ++.+......+|.+|+.||+-+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~-v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDH-VVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCce-EEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 5578887 4556777999988 999995 5666666667899999999975
No 301
>PF13730 HTH_36: Helix-turn-helix domain
Probab=70.36 E-value=4.6 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.1
Q ss_pred CHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 21 SASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 21 t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.||+.+|+ ... .+.+.+..|...|
T Consensus 27 S~~~la~~~g~--s~~--Tv~~~i~~L~~~G 53 (55)
T PF13730_consen 27 SQETLAKDLGV--SRR--TVQRAIKELEEKG 53 (55)
T ss_pred CHHHHHHHHCc--CHH--HHHHHHHHHHHCc
Confidence 89999999999 654 8899999888765
No 302
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=70.30 E-value=4.2 Score=32.52 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred cceEEEecCCccHHHHHHHHHCCCC--------Ceeeeccch
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFI--------CEGINFDLP 166 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l--------~~~~v~Dlp 166 (199)
.-+|+++|+|+|.++..+++..... + .++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~-y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLR-YHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCE-EEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcce-EEEEcCC
Confidence 4699999999999999998865544 5 5666653
No 303
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=69.17 E-value=3.7 Score=28.43 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=29.8
Q ss_pred ccccccC--CCCCCHHHHHHHcC-----CCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA--NTPLSASQILTRIL-----PSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~--~g~~t~~eLA~~~~-----~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|++.|. +++.|++||.+.+. + +.. -+.|.|+.|+..|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i--~~~--TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSI--SLA--TVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCC--CHH--HHHHHHHHHHhCC
Confidence 4566664 47899999999884 4 333 7899999999999
No 304
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=68.20 E-value=3.8 Score=29.86 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=34.5
Q ss_pred chhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++..+...|. +++.|..+||+++|+ ++. .+.+-++-|...|
T Consensus 7 D~~D~~IL~~L~~d~r~~~~eia~~lgl--S~~--~v~~Ri~~L~~~G 50 (154)
T COG1522 7 DDIDRRILRLLQEDARISNAELAERVGL--SPS--TVLRRIKRLEEEG 50 (154)
T ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 345556667776 588999999999999 666 7888888888888
No 305
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=68.10 E-value=29 Score=28.55 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=61.2
Q ss_pred HHHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHH-----HhcCCCC
Q 037818 106 GLMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEV-----VGEAPSI 175 (199)
Q Consensus 106 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v-----~~~a~~~ 175 (199)
+.+..+|-..++.. ..-|+..++ -....+|+.-|.|+|.++.+++++- |.=+ ..-||.-+. .+..++.
T Consensus 76 ELWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 76 ELWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HHhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHh
Confidence 34667776555533 345667776 6667899999999999999999987 4444 777776332 2333332
Q ss_pred ---CCceEEeCCCCC-CCCc----ccEEEe
Q 037818 176 ---LGVTHIGGDTFK-SIPA----ADAIFM 197 (199)
Q Consensus 176 ---~ri~~~~gd~f~-~~P~----aD~~~l 197 (199)
+.+++.--|.-. .++. +|+++|
T Consensus 154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCcceEEEEeecccCCccccccccceEEE
Confidence 678888777775 3444 588876
No 306
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=67.93 E-value=4.1 Score=29.56 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=31.7
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+...|. +++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 44 ~vL~~l~~~~~~t~~eLa~~l~i--~~~--tvsr~l~~Le~~G 82 (144)
T PRK11512 44 KVLCSIRCAACITPVELKKVLSV--DLG--ALTRMLDRLVCKG 82 (144)
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3444454 478999999999999 776 9999999999999
No 307
>PRK09273 hypothetical protein; Provisional
Probab=67.69 E-value=4.4 Score=31.74 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=33.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~ 175 (199)
...=++||+|.=..-.+.++|.++ +-++--|.....+++.
T Consensus 65 d~GIliCGTGiG~siAANK~pGIr-aalc~d~~sA~lar~h 104 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVV-CGYCIDPTDAYLFAQI 104 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 344589999999999999999999 8777778888887764
No 308
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=67.57 E-value=2.2 Score=24.30 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=18.4
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGD 36 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~ 36 (199)
+..|...|. ++..+..+||+.+|+ ++.
T Consensus 5 D~~Il~~Lq~d~r~s~~~la~~lgl--S~~ 32 (42)
T PF13404_consen 5 DRKILRLLQEDGRRSYAELAEELGL--SES 32 (42)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTS---HH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCc--CHH
Confidence 344555665 588999999999999 554
No 309
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=67.02 E-value=7.6 Score=28.62 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+|++|.+|||.+.|+ +++ .+..-|..+++.|
T Consensus 4 ~Ga~T~eELA~~FGv--ttR--kvaStLa~~ta~G 34 (155)
T PF07789_consen 4 EGAKTAEELAGKFGV--TTR--KVASTLAMVTATG 34 (155)
T ss_pred cCcccHHHHHHHhCc--chh--hhHHHHHHHHhcc
Confidence 599999999999999 766 8888899999988
No 310
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=66.92 E-value=6.2 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+.|..+||++.|+ ++. .++++|..|...|
T Consensus 24 ~~~s~~~ia~~~~i--s~~--~vrk~l~~L~~~G 53 (141)
T PRK11014 24 RMTSISEVTEVYGV--SRN--HMVKIINQLSRAG 53 (141)
T ss_pred CccCHHHHHHHHCc--CHH--HHHHHHHHHHhCC
Confidence 46899999999999 665 8999999999999
No 311
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=66.91 E-value=4.8 Score=22.49 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
.+.|+++||..+|+ ++. .+.|+.+...
T Consensus 7 ~~~~l~~iA~~~g~--S~~--~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF--SPS--YFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS---HH--HHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC--CHH--HHHHHHHHHH
Confidence 46999999999999 665 7777766543
No 312
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=66.81 E-value=7 Score=26.38 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++|..|||+.+|+ ++. .+.|.|..|...|
T Consensus 46 ~~is~~eLa~~~g~--sr~--tVsr~L~~Le~~G 75 (95)
T TIGR01610 46 DRVTATVIAELTGL--SRT--HVSDAIKSLARRR 75 (95)
T ss_pred CccCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 57999999999999 666 8999999998887
No 313
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=66.53 E-value=6.6 Score=31.47 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=37.6
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-HHhcCC----CC-CCceEEeCCCCCCCCc----
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVGEAP----SI-LGVTHIGGDTFKSIPA---- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v~~~a~----~~-~ri~~~~gd~f~~~P~---- 191 (199)
-+.+..+ +.+ ++|+-||= .=..+.+++-.++.-+ .+|+|..+ .++..+ +. -.|+.+-+|+-+++|+
T Consensus 36 ~~~~~gd-L~g-k~il~lGD-DDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~ 111 (243)
T PF01861_consen 36 LMAERGD-LEG-KRILFLGD-DDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRG 111 (243)
T ss_dssp HHHHTT--STT--EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS
T ss_pred HHHhcCc-ccC-CEEEEEcC-CcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhc
Confidence 3455666 555 78998994 4445566666777778 99999863 333332 21 2399999999999997
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|+++-
T Consensus 112 ~fD~f~T 118 (243)
T PF01861_consen 112 KFDVFFT 118 (243)
T ss_dssp -BSEEEE
T ss_pred CCCEEEe
Confidence 388864
No 314
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=66.22 E-value=20 Score=30.07 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC----CCCCeeeeccch-HHHh----cCC--CCCCceE--EeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH----RFICEGINFDLP-EVVG----EAP--SILGVTH--IGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~~v~Dlp-~v~~----~a~--~~~ri~~--~~gd~f~ 187 (199)
+.|++.++ ....|||+|+|+|.=.+.|+++. ...+ -+-+|+. +.++ ..+ ..+.+++ +.|||.+
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 45666654 33489999999999666555554 3456 6888874 2333 233 2365555 7899976
No 315
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=66.15 E-value=8.8 Score=33.01 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=24.1
Q ss_pred CcceEEEecCCccHHHH--------HHHHH-------CCCCCeeeeccch
Q 037818 132 GVKQLVDVGGSAGDCLR--------MILQK-------HRFICEGINFDLP 166 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~--------~l~~~-------~P~l~~~~v~Dlp 166 (199)
+.-.|+|+|||+|..+. ++.++ -|.++ +..=|||
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP 111 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLP 111 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCC
Confidence 45689999999996432 23333 35677 8888998
No 316
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=66.04 E-value=6 Score=27.87 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+.|++|||+.+.+ ++. .++.+|+-|...|
T Consensus 18 ~~vtl~elA~~l~c--S~R--n~r~lLkkm~~~g 47 (115)
T PF12793_consen 18 VEVTLDELAELLFC--SRR--NARTLLKKMQEEG 47 (115)
T ss_pred cceeHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 46899999999999 776 9999999999999
No 317
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=65.52 E-value=6.4 Score=24.22 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.+..+||+.+++ .+. .+...+.-|...|
T Consensus 20 ~~~v~~~~iA~~L~v--s~~--tvt~ml~~L~~~G 50 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV--SPP--TVTEMLKRLAEKG 50 (60)
T ss_dssp TSSBBHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHCC--ChH--HHHHHHHHHHHCC
Confidence 588999999999999 665 7888888887766
No 318
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=64.65 E-value=5.3 Score=25.24 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.|-++||..+|+ +.. .+.|+|+.|...|
T Consensus 27 ~~lt~~~iA~~~g~--sr~--tv~r~l~~l~~~g 56 (76)
T PF13545_consen 27 LPLTQEEIADMLGV--SRE--TVSRILKRLKDEG 56 (76)
T ss_dssp EESSHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred ecCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 46899999999999 665 8999999998887
No 319
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=63.83 E-value=2.2 Score=36.07 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGD 184 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd 184 (199)
.+.+..+ .++. .|+|+=||.|.++..+++..-.+ +.+|. ++.++.|+++ ++++|+.++
T Consensus 188 ~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~~V---~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 188 QALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAKKV---IGVEIVEEAVEDARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp HHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSSEE---EEEES-HHHHHHHHHHHHHTT--SEEEEE--
T ss_pred HHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCCeE---EEeeCCHHHHHHHHHHHHHcCCCcceEEEee
Confidence 3444444 3333 79999999999999999888654 45564 6777777653 778888654
No 320
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=63.44 E-value=4.8 Score=27.26 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=19.2
Q ss_pred EEecCCccHHHHHHHHHCCCCC--eeeeccchH----HHhcCCC---CCCceEEeCCCCCC---CC-c-ccEEEe
Q 037818 137 VDVGGSAGDCLRMILQKHRFIC--EGINFDLPE----VVGEAPS---ILGVTHIGGDTFKS---IP-A-ADAIFM 197 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~--~~~v~Dlp~----v~~~a~~---~~ri~~~~gd~f~~---~P-~-aD~~~l 197 (199)
|+||...|..+..+++..+... +.+.+|..+ +-+..++ .++++++.||+.+- ++ . -|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 5789999998888888777663 278899765 2223332 27899999999752 33 2 277665
No 321
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=62.90 E-value=7.9 Score=28.32 Aligned_cols=47 Identities=15% Similarity=0.011 Sum_probs=34.3
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+.+.+.
T Consensus 62 liCgtGiG~~iaANK~~GIr-Aa~~~d~~~A~~ar~hNdaNVL~lG~~~~ 110 (140)
T PF02502_consen 62 LICGTGIGMSIAANKVPGIR-AALCSDPYSAKMAREHNDANVLCLGARVI 110 (140)
T ss_dssp EEESSSHHHHHHHHTSTT---EEE-SSHHHHHHHHHTT--SEEEEETTTS
T ss_pred EEcCCChhhhhHhhcCCCEE-EEeeCCHHHHHHHHHhcCCcEEEechhhc
Confidence 67899998889999999999 9999999988888875 45555555543
No 322
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=62.79 E-value=2.7 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=30.4
Q ss_pred cccccCCCCCCHHHHHHHc---CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI---LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~---~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+|....++..++.++|+.+ +. ....++++.++.+|.++|
T Consensus 16 ~~~~~~~~~i~l~~ia~~l~~~~~--k~~~RRlYDI~NVLealg 57 (71)
T PF02319_consen 16 LFESSPDKSISLNEIADKLISENV--KTQRRRLYDIINVLEALG 57 (71)
T ss_dssp HHHHCCCTEEEHHHHHHHCHHHCC--HHHCHHHHHHHHHHHHCT
T ss_pred HHHHCCCCcccHHHHHHHHccccc--ccccchhhHHHHHHHHhC
Confidence 5555667889999999999 76 222348888999999988
No 323
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=62.47 E-value=4.8 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=13.8
Q ss_pred CHHHHHHHcCCCCCCCcchHHHHH
Q 037818 21 SASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 21 t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
|+.|||+.+|+ +.. -+.|.|
T Consensus 1 Ti~dIA~~agv--S~~--TVSr~l 20 (46)
T PF00356_consen 1 TIKDIAREAGV--SKS--TVSRVL 20 (46)
T ss_dssp CHHHHHHHHTS--SHH--HHHHHH
T ss_pred CHHHHHHHHCc--CHH--HHHHHH
Confidence 67899999999 443 444444
No 324
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=62.13 E-value=9.4 Score=30.10 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=35.2
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCCc-----ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIPA-----ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P~-----aD~~~l~ 198 (199)
-++||||+-+.... +..++-+. ++-+||-+.-+ .....||++ |+|. -|+|.++
T Consensus 53 lrlLEVGals~~N~---~s~~~~fd-vt~IDLns~~~--------~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 53 LRLLEVGALSTDNA---CSTSGWFD-VTRIDLNSQHP--------GILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred ceEEeecccCCCCc---ccccCcee-eEEeecCCCCC--------CceeeccccCCCCCCcccceeEEEEE
Confidence 59999998755422 23467777 88888854322 233789997 8885 2787764
No 325
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=61.97 E-value=9 Score=30.98 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=40.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccchHHHhcCC---------CCCCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVGEAP---------SILGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp~v~~~a~---------~~~ri~~~~gd~f~ 187 (199)
.+...||.+|+|-=.-...+- +| +++ ..=+|+|+|++.=+ ..++.++++.|+.+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~--~~~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLP--WPDGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred cCCcEEEEeCCccccHHHhcC--CCCCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 346789999999888777663 34 577 88889999886432 23789999999973
No 326
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=61.83 E-value=11 Score=26.03 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 42 ~~~t~~eL~~~l~~--~~s--tvs~~i~~Le~kg 71 (109)
T TIGR01889 42 GKLTLKEIIKEILI--KQS--ALVKIIKKLSKKG 71 (109)
T ss_pred CcCcHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 78999999999999 666 8999999999999
No 327
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=61.73 E-value=1.6 Score=28.62 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred hccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++++|...|.. +..+..+|.+.+|+ +.. .+.+-|..|...|
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~l--t~g--~Ls~hL~~Le~~G 42 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGL--TDG--NLSKHLKKLEEAG 42 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT----HH--HHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence 45667777764 78999999999999 555 8999999999998
No 328
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=61.37 E-value=7.2 Score=24.58 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=26.7
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+ ++.|+.+|++.+++ +.. -+..-+.-|+.-+
T Consensus 13 Vw~~L~~~~~~s~~el~k~~~l--~~~--~~~~AiGWLarE~ 50 (65)
T PF10771_consen 13 VWQLLNENGEWSVSELKKATGL--SDK--EVYLAIGWLAREN 50 (65)
T ss_dssp HHHHHCCSSSEEHHHHHHHCT---SCH--HHHHHHHHHHCTT
T ss_pred HHHHHhhCCCcCHHHHHHHhCc--CHH--HHHHHHHHHhccC
Confidence 4567776 89999999999999 544 5666666666544
No 329
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=61.36 E-value=6.1 Score=30.55 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=29.7
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-+...|.+ ++.|..+||+.+++ ++. .+.|.|..|...|
T Consensus 146 ~~IL~~l~~~g~~s~~eia~~l~i--s~s--tv~r~L~~Le~~G 185 (203)
T TIGR01884 146 LKVLEVLKAEGEKSVKNIAKKLGK--SLS--TISRHLRELEKKG 185 (203)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 344555554 77899999999999 665 7888888888777
No 330
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=61.17 E-value=7.6 Score=28.54 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=36.1
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++.+
T Consensus 62 liCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNvl~lG~r~ 109 (143)
T TIGR01120 62 LICGTGIGMSIAANKFAGIR-AALCSEPYMAQMSRLHNDANVLCLGERV 109 (143)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECcce
Confidence 67899998888999999999 9888888888888874 3444444444
No 331
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=61.10 E-value=2 Score=29.48 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.|. .|.++-++||+.+++ ++. .++++|..|...|
T Consensus 18 Il~~L~~~~~l~de~la~~~~l--~~~--~vRkiL~~L~~~~ 55 (105)
T PF02002_consen 18 ILDALLRKGELTDEDLAKKLGL--KPK--EVRKILYKLYEDG 55 (105)
T ss_dssp HHHHHHHH--B-HHHHHHTT-S---HH--HHHHHHHHHHHHS
T ss_pred HHHHHHHcCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 566665 488999999999999 665 8999999998877
No 332
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=61.07 E-value=10 Score=30.50 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=31.2
Q ss_pred CC-CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCC
Q 037818 130 FK-GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAP 173 (199)
Q Consensus 130 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~ 173 (199)
|. +...+|.+|+|+| +.-.++....... ++.-|.|.+++.-+
T Consensus 83 ~~~~~~~vlELGsGtg-lvG~~aa~~~~~~-v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTG-LVGILAALLLGAE-VVLTDLPKVVENLK 125 (248)
T ss_pred ccccceeEEEecCCcc-HHHHHHHHHhcce-eccCCchhhHHHHH
Confidence 55 4678999999999 4444555667777 88889887776544
No 333
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=60.64 E-value=7.6 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=37.2
Q ss_pred CcceEEEecCCcc-HHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCC-CC--CcccEEEe
Q 037818 132 GVKQLVDVGGSAG-DCLRMILQKH-RFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFK-SI--PAADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G-~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~-~~--P~aD~~~l 197 (199)
..++|+=||+|.= .-++-+++.+ ++.. ++.+|. |+.++.+++ ..|++|+.+|..+ +. -.-|+|++
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 3469999999954 4555666554 7888 899997 677776653 2789999999985 22 22388887
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 199 A 199 (276)
T PF03059_consen 199 A 199 (276)
T ss_dssp -
T ss_pred h
Confidence 4
No 334
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=60.43 E-value=15 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=40.3
Q ss_pred HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC--CCCeeeeccchHHH
Q 037818 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR--FICEGINFDLPEVV 169 (199)
Q Consensus 106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~~v~Dlp~v~ 169 (199)
....+.+..........+.+.+..++...+|+=+|||.=.+...+.+.+| +-+ +++.|-|+..
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~-i~i~~~pqfA 310 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGDFSDIDRIFFVGGGAILLKDAIKEAFPVPNER-IVIVDDPQFA 310 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-S-SEEEEESTTHHHHHHHHHHHHT--GGG-EE--SSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEECCcHHHHHHHHHHhhCCCCCc-EEECCCchhh
Confidence 33444444443333445555543377778899999999999999999987 566 8888888653
No 335
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=59.93 E-value=13 Score=26.88 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.++.+||+.+++ ++. .+.+.++.|...|
T Consensus 20 ~~~~~~~ela~~l~v--s~~--svs~~l~~L~~~G 50 (142)
T PRK03902 20 KGYARVSDIAEALSV--HPS--SVTKMVQKLDKDE 50 (142)
T ss_pred CCCcCHHHHHHHhCC--Chh--HHHHHHHHHHHCC
Confidence 488999999999999 666 8999999999999
No 336
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=59.56 E-value=8.3 Score=28.37 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=37.2
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +-++--|.....+++. .+|-.+++.+.
T Consensus 61 liCGtGiG~siaANK~~GIr-aa~~~d~~~A~~ar~hNnaNVl~lGar~i 109 (144)
T TIGR00689 61 LICGTGIGMSIAANKFKGIR-AALCVDEYTAALARQHNDANVLCLGSRVV 109 (144)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECcccc
Confidence 67899998899999999999 9888888888888874 44555555543
No 337
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=59.53 E-value=8.5 Score=28.46 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=36.2
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+-||+|.=..-.+.++|.++ +.++--|.....+++. .+|=.+++.+.
T Consensus 64 liCGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~lG~r~i 112 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIR-AALCHDTYSAHLAREHNNANVLALGARVI 112 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECcccc
Confidence 56889988888999999999 9888889888888874 34444444443
No 338
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.46 E-value=8 Score=25.84 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
..++|.++||++++. .+. .++++|.+-
T Consensus 21 l~~LS~~~iA~~Ln~--t~~--~lekil~~t 47 (97)
T COG4367 21 LCPLSDEEIATALNW--TEV--KLEKILQVT 47 (97)
T ss_pred hccccHHHHHHHhCC--CHH--HHHHHHHHh
Confidence 368999999999999 776 888887653
No 339
>PRK11050 manganese transport regulator MntR; Provisional
Probab=59.19 E-value=8.3 Score=28.45 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.+..+||+.+++ ++. .+.+.++-|...|
T Consensus 49 ~~~~t~~eLA~~l~i--s~s--tVsr~l~~Le~~G 79 (152)
T PRK11050 49 VGEARQVDIAARLGV--SQP--TVAKMLKRLARDG 79 (152)
T ss_pred cCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 378999999999999 666 8999999999998
No 340
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=58.79 E-value=9.4 Score=25.49 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-+|+..||+++++ +.. ..++.||.|...|
T Consensus 40 K~ITps~lserlkI--~~S--lAr~~Lr~L~~kG 69 (86)
T PRK09334 40 KIVTPYTLASKYGI--KIS--VAKKVLRELEKRG 69 (86)
T ss_pred cEEcHHHHHHHhcc--hHH--HHHHHHHHHHHCC
Confidence 45899999999999 666 8899999999888
No 341
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=58.67 E-value=7.4 Score=30.23 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=27.3
Q ss_pred ccccCCC--CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 12 KVRLANT--PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 12 f~~L~~g--~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...+.+| ..|..|||+++++ ++. -+++-+.+|+..|
T Consensus 168 l~~~~~g~~g~s~~eIa~~l~i--S~~--Tv~~~~~~~~~~~ 205 (225)
T PRK10046 168 RKLFKEPGVQHTAETVAQALTI--SRT--TARRYLEYCASRH 205 (225)
T ss_pred HHHHHcCCCCcCHHHHHHHhCc--cHH--HHHHHHHHHHhCC
Confidence 3444554 5899999999999 665 6788888888877
No 342
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=57.65 E-value=8 Score=31.02 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAP 173 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~ 173 (199)
...+.+.|||||-|.+.+.+..+. +.+.|..|.. ..++.++
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~ 112 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCR 112 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhh
Confidence 345799999999999999999887 5546777864 3344443
No 343
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=57.64 E-value=11 Score=23.65 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=20.4
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+.|+++||+.+|+ ++. .+.+++....
T Consensus 1 ~~~~~~la~~~~~--s~~--~l~~~f~~~~ 26 (84)
T smart00342 1 PLTLEDLAEALGM--SPR--HLQRLFKKET 26 (84)
T ss_pred CCCHHHHHHHhCC--CHH--HHHHHHHHHh
Confidence 4789999999999 665 7777766554
No 344
>PRK12423 LexA repressor; Provisional
Probab=57.26 E-value=6.2 Score=30.54 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=32.9
Q ss_pred CCCcchhccccccccCC----C--CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 1 MEDNECREGGKKVRLAN----T--PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 1 ~~~~~A~~lglf~~L~~----g--~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.+-...-+++.|.+ + +-|..|||+.+|+. .+. .++.-|+.|...|
T Consensus 1 m~~lt~~q~~il~~l~~~i~~~g~~Ps~~eia~~~g~~-s~~--~v~~~l~~L~~~G 54 (202)
T PRK12423 1 MDTLTPKRAAILAFIRERIAQAGQPPSLAEIAQAFGFA-SRS--VARKHVQALAEAG 54 (202)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC-ChH--HHHHHHHHHHHCC
Confidence 33334444455666643 2 56999999999951 333 6789999999988
No 345
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=56.95 E-value=2.8 Score=26.02 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=23.6
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSY 50 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~ 50 (199)
|++.|- .|+.|+.+|++.+++ +++ .++.-|-.|...
T Consensus 18 V~~~Ll~~G~ltl~~i~~~t~l--~~~--~Vk~~L~~LiQh 54 (62)
T PF08221_consen 18 VGEVLLSRGRLTLREIVRRTGL--SPK--QVKKALVVLIQH 54 (62)
T ss_dssp HHHHHHHC-SEEHHHHHHHHT----HH--HHHHHHHHHHHT
T ss_pred HHHHHHHcCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHc
Confidence 344443 589999999999999 655 677666666544
No 346
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=56.76 E-value=8 Score=28.40 Aligned_cols=37 Identities=19% Similarity=0.067 Sum_probs=30.5
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhh
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTS 49 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~ 49 (199)
.-|++.|- .+.+|-++||+.+|+ +.. .++++|..|..
T Consensus 4 ~~v~d~L~~~~~~~dedLa~~l~i--~~n--~vRkiL~~L~e 41 (147)
T smart00531 4 FLVLDALMRNGCVTEEDLAELLGI--KQK--QLRKILYLLYD 41 (147)
T ss_pred EeehHHHHhcCCcCHHHHHHHhCC--CHH--HHHHHHHHHHh
Confidence 34667664 588999999999999 655 89999999987
No 347
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=56.75 E-value=13 Score=25.88 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-+|+..||+++++ +.. ..+++|+.|.+-|
T Consensus 58 K~ITp~~lserlkI--~~S--lAr~~Lr~L~~kG 87 (105)
T PF03297_consen 58 KLITPSVLSERLKI--NGS--LARKALRELESKG 87 (105)
T ss_dssp SCECHHHHHHHHCC--SCH--HHHHHHHHHHHCC
T ss_pred cEeeHHHHHHhHhh--HHH--HHHHHHHHHHHCC
Confidence 56999999999999 666 8899999999988
No 348
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=56.45 E-value=11 Score=28.82 Aligned_cols=45 Identities=16% Similarity=0.074 Sum_probs=34.7
Q ss_pred CcchhccccccccCC------CCCCHHHHHHHcCCCCC-CCcchHHHHHHHHhhCC
Q 037818 3 DNECREGGKKVRLAN------TPLSASQILTRILPSGD-GDAENLQRILRLLTSYG 51 (199)
Q Consensus 3 ~~~A~~lglf~~L~~------g~~t~~eLA~~~~~~~~-~~~~~l~rlL~~l~~~g 51 (199)
+....+.-|++.|.+ -+.|+.|||+.+|+ + +. .+.+.|+.|...|
T Consensus 3 ~lt~~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~--~s~~--tv~~~l~~L~~~g 54 (199)
T TIGR00498 3 PLTARQQEVLDLIRAHIESTGYPPSIREIARAVGL--RSPS--AAEEHLKALERKG 54 (199)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC--CChH--HHHHHHHHHHHCC
Confidence 334555566666652 36899999999999 6 55 8999999999999
No 349
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=56.29 E-value=12 Score=22.46 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=23.6
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 20 LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|..+||+.+++ +.. .+.+.|..|...|
T Consensus 26 ~~~~~la~~~~i--s~~--~v~~~l~~L~~~G 53 (66)
T cd07377 26 PSERELAEELGV--SRT--TVREALRELEAEG 53 (66)
T ss_pred CCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 459999999999 655 8899999888777
No 350
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=56.25 E-value=15 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|+.|+.|||+.+|+ +.. .+..+|+.|...|
T Consensus 28 ~g~~tA~eis~~sgv--P~~--kvY~vl~sLe~kG 58 (247)
T COG1378 28 LGEATAKEISEASGV--PRP--KVYDVLRSLEKKG 58 (247)
T ss_pred hCCccHHHHHHHcCC--Cch--hHHHHHHHHHHCC
Confidence 499999999999999 544 8999999999999
No 351
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=55.53 E-value=8.4 Score=22.44 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=22.6
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
|...+.+. .|..++|+.+|+ +.. -+.|+++-
T Consensus 20 i~~~~~~~-~s~~~vA~~~~v--s~~--TV~ri~~~ 50 (52)
T PF13542_consen 20 ILKLLRES-RSFKDVARELGV--SWS--TVRRIFDR 50 (52)
T ss_pred HHHHHhhc-CCHHHHHHHHCC--CHH--HHHHHHHh
Confidence 33444444 799999999999 665 78887754
No 352
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=55.45 E-value=7.6 Score=31.16 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=31.3
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+.|.+ +..++.|||+.+|+ ++. -++|-|+.|...|
T Consensus 10 Il~~l~~~~~~~~~ela~~l~v--S~~--TirRdL~~Le~~g 47 (251)
T PRK13509 10 LLELLAQLGFVTVEKVIERLGI--SPA--TARRDINKLDESG 47 (251)
T ss_pred HHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4556654 88999999999999 666 8999999999888
No 353
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=55.32 E-value=6.5 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=26.5
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...+.+++.+..+|+..+++ +.. .+.+.|..|...|
T Consensus 11 IL~~l~~~~~~~t~i~~~~~L--~~~--~~~~yL~~L~~~g 47 (77)
T PF14947_consen 11 ILKILSKGGAKKTEIMYKANL--NYS--TLKKYLKELEEKG 47 (77)
T ss_dssp HHHHH-TT-B-HHHHHTTST----HH--HHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCc
Confidence 334455789999999999999 665 8899999999888
No 354
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=55.30 E-value=5.6 Score=26.19 Aligned_cols=30 Identities=3% Similarity=-0.041 Sum_probs=21.8
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
|.++|.++..|+.+||+.+|+ +.. -+.|.|
T Consensus 11 I~e~l~~~~~ti~dvA~~~gv--S~~--TVsr~L 40 (80)
T TIGR02844 11 IGKYIVETKATVRETAKVFGV--SKS--TVHKDV 40 (80)
T ss_pred HHHHHHHCCCCHHHHHHHhCC--CHH--HHHHHh
Confidence 344554588999999999999 554 566644
No 355
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=54.85 E-value=9.9 Score=33.80 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHH
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDC 146 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~ 146 (199)
-.+...++ +.+...++|||||+=.+
T Consensus 119 lGv~~~~~-~~~~~lv~DIGGGStEl 143 (492)
T COG0248 119 LGVASTLP-RKGDGLVIDIGGGSTEL 143 (492)
T ss_pred HHHHhcCC-CCCCEEEEEecCCeEEE
Confidence 35667777 67778999999998543
No 356
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=54.84 E-value=10 Score=21.25 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=14.5
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHH
Q 037818 20 LSASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
.|++|+|+.+|+ ++. .+.+++
T Consensus 2 lt~~e~a~~lgi--s~~--ti~~~~ 22 (49)
T TIGR01764 2 LTVEEAAEYLGV--SKD--TVYRLI 22 (49)
T ss_pred CCHHHHHHHHCC--CHH--HHHHHH
Confidence 478899999999 543 455544
No 357
>PRK13239 alkylmercury lyase; Provisional
Probab=54.58 E-value=7.4 Score=30.42 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=29.6
Q ss_pred hhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 6 CREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 6 A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
.+..-|+..|++ .|.|+++||+.+|. +.+ .+++.|+.|.
T Consensus 22 ~~~~~llr~la~G~pvt~~~lA~~~~~--~~~--~v~~~L~~l~ 61 (206)
T PRK13239 22 TLLVPLLRLLAKGRPVSVTTLAAALGW--PVE--EVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCC--CHH--HHHHHHHhCC
Confidence 345556677775 69999999999999 655 7777777765
No 358
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=54.36 E-value=19 Score=25.88 Aligned_cols=30 Identities=27% Similarity=0.204 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 45 ~~~t~~eLa~~l~~--~~~--tvt~~v~~Le~~G 74 (144)
T PRK03573 45 PEQSQIQLAKAIGI--EQP--SLVRTLDQLEEKG 74 (144)
T ss_pred CCCCHHHHHHHhCC--Chh--hHHHHHHHHHHCC
Confidence 45899999999999 766 8999999999999
No 359
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=53.87 E-value=14 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=27.5
Q ss_pred ceEEEecCC-ccHHHH-HHHHHCCCCCeeeeccchHH
Q 037818 134 KQLVDVGGS-AGDCLR-MILQKHRFICEGINFDLPEV 168 (199)
Q Consensus 134 ~~vvDvGGG-~G~~~~-~l~~~~P~l~~~~v~Dlp~v 168 (199)
..|+=|||| +|..+. .|+++.|..+ ++|+|.-.+
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~-V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALD-VLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEeCCcc
Confidence 468889999 788555 8888899999 999997543
No 360
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=53.66 E-value=11 Score=32.40 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHH
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 169 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~ 169 (199)
|.+..+|||||-|.|++++-+. -.=+++ +..+|-..+.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lS-l~y~ls-V~aIegsq~~ 188 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLS-LGYGLS-VKAIEGSQRL 188 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHh-hccCce-EEEeccchHH
Confidence 8889999999999999887655 444667 7777765443
No 361
>PHA00738 putative HTH transcription regulator
Probab=53.33 E-value=8.9 Score=26.71 Aligned_cols=41 Identities=27% Similarity=0.211 Sum_probs=34.0
Q ss_pred hccccccccCCC-CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLANT-PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~g-~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|++.|.++ +.++.+|++.+++ +.. .+.+=|+.|...|
T Consensus 13 tRr~IL~lL~~~e~~~V~eLae~l~l--SQp--tVS~HLKvLreAG 54 (108)
T PHA00738 13 LRRKILELIAENYILSASLISHTLLL--SYT--TVLRHLKILNEQG 54 (108)
T ss_pred HHHHHHHHHHHcCCccHHHHHHhhCC--CHH--HHHHHHHHHHHCC
Confidence 456788888875 6999999999999 554 7888899999888
No 362
>PHA02591 hypothetical protein; Provisional
Probab=52.88 E-value=6.5 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=21.8
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
..|.+...|.++||+.+|+ +.. .+++.|+
T Consensus 53 ~eL~eqGlSqeqIA~~LGV--sqe--tVrKYL~ 81 (83)
T PHA02591 53 HELARKGFTVEKIASLLGV--SVR--KVRRYLE 81 (83)
T ss_pred HHHHHcCCCHHHHHHHhCC--CHH--HHHHHHh
Confidence 3455567999999999999 554 6776665
No 363
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=52.44 E-value=10 Score=25.76 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=28.5
Q ss_pred ccccccCC-----CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-----TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-----g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|++.|.+ ..+++++|++++++ +.. .++..|+.|+..|
T Consensus 51 ~Vl~~i~~~~~~~~Gv~v~~I~~~l~~--~~~--~v~~al~~L~~eG 93 (102)
T PF08784_consen 51 KVLNFIKQQPNSEEGVHVDEIAQQLGM--SEN--EVRKALDFLSNEG 93 (102)
T ss_dssp HHHHHHHC----TTTEEHHHHHHHSTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCcccHHHHHHHhCc--CHH--HHHHHHHHHHhCC
Confidence 35555532 45899999999999 655 8888899998877
No 364
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=52.44 E-value=9 Score=24.44 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
..-|.+|||+.+|+ +++ .+..+|....
T Consensus 19 r~Pt~eEiA~~lgi--s~~--~v~~~l~~~~ 45 (78)
T PF04539_consen 19 REPTDEEIAEELGI--SVE--EVRELLQASR 45 (78)
T ss_dssp S--BHHHHHHHHTS---HH--HHHHHHHHHS
T ss_pred CCCCHHHHHHHHcc--cHH--HHHHHHHhCC
Confidence 46899999999999 665 7777776543
No 365
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=52.34 E-value=8.2 Score=22.26 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=20.1
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...+.+ ..|..+||+.+|+ ++. -+.++++-....|
T Consensus 10 ii~l~~~-G~s~~~ia~~lgv--s~~--Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 10 IIRLLRE-GWSIREIAKRLGV--SRS--TVYRWIKRYREEG 45 (50)
T ss_dssp HHHHHHH-T--HHHHHHHHTS---HH--HHHHHHT------
T ss_pred HHHHHHC-CCCHHHHHHHHCc--CHH--HHHHHHHHccccc
Confidence 3333444 6899999999999 665 7888876554433
No 366
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=51.64 E-value=12 Score=30.74 Aligned_cols=55 Identities=24% Similarity=0.171 Sum_probs=38.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHH-hcCCCCCCceEEeCCCCC-CCCc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV-GEAPSILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~-~~a~~~~ri~~~~gd~f~-~~P~ 191 (199)
....++|+|||.|.+.. -+|.+. .+.+|+-.-+ ..++..+.....-.|... |.++
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCC
Confidence 35799999999999765 349899 9999996444 444444333566777775 5443
No 367
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=51.21 E-value=3.4 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=17.7
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
..+.+..+|..+||+.+|+ ++. .+.+++.
T Consensus 4 ~~m~~~~it~~~La~~~gi--s~~--tl~~~~~ 32 (63)
T PF13443_consen 4 ELMAERGITQKDLARKTGI--SRS--TLSRILN 32 (63)
T ss_dssp HHHHHTT--HHHHHHHHT----HH--HHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCc--CHH--HHHHHHh
Confidence 3455566899999999999 554 5666654
No 368
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=51.21 E-value=12 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhh
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTS 49 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~ 49 (199)
...|..|||+.+|+ ++. .+...+..+..
T Consensus 31 eGlS~kEIAe~LGI--S~~--TVk~~l~~~~~ 58 (73)
T TIGR03879 31 AGKTASEIAEELGR--TEQ--TVRNHLKGETK 58 (73)
T ss_pred cCCCHHHHHHHHCc--CHH--HHHHHHhcCcc
Confidence 56899999999999 665 66666665443
No 369
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=51.11 E-value=14 Score=27.97 Aligned_cols=36 Identities=11% Similarity=-0.201 Sum_probs=31.0
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~ 175 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++.
T Consensus 63 liCGTGiG~siaANK~~GIR-AA~~~d~~~A~~ar~h 98 (171)
T PRK12615 63 CICGTGVGINNAVNKVPGIR-SALVRDMTTALYAKEE 98 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 66899998888999999999 8888778888888874
No 370
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=51.05 E-value=7.8 Score=28.27 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=22.5
Q ss_pred cccccCCC---CCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 11 KKVRLANT---PLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 11 lf~~L~~g---~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
|-+.|.+. ..|+.+||+.||+ ++. .+.+|++-
T Consensus 35 V~~yLr~~p~~~ati~eV~e~tgV--s~~--~I~~~Ire 69 (137)
T TIGR03826 35 VYKFLRKHENRQATVSEIVEETGV--SEK--LILKFIRE 69 (137)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCc--CHH--HHHHHHHc
Confidence 44455543 3799999999999 655 67777643
No 371
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=51.00 E-value=13 Score=20.70 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.8
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 20 LSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
.|..|+|+.+|+ ++. .+.++.+
T Consensus 1 ~s~~e~a~~lgv--s~~--tl~~~~~ 22 (49)
T cd04762 1 LTTKEAAELLGV--SPS--TLRRWVK 22 (49)
T ss_pred CCHHHHHHHHCc--CHH--HHHHHHH
Confidence 367889999998 544 4555543
No 372
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=50.77 E-value=15 Score=21.20 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
-...|.+|||+.+|+ +.. .+.++.+
T Consensus 18 ~~~~t~~eIa~~lg~--s~~--~V~~~~~ 42 (50)
T PF04545_consen 18 FEGLTLEEIAERLGI--SRS--TVRRILK 42 (50)
T ss_dssp TST-SHHHHHHHHTS--CHH--HHHHHHH
T ss_pred cCCCCHHHHHHHHCC--cHH--HHHHHHH
Confidence 357999999999999 655 6666654
No 373
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.73 E-value=25 Score=28.23 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=26.4
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK 153 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~ 153 (199)
...++.|+...+.+.++|||-++|.|..-++++
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc
Confidence 355667763356699999999999999998887
No 374
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=50.47 E-value=14 Score=27.97 Aligned_cols=36 Identities=8% Similarity=-0.219 Sum_probs=30.7
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~ 175 (199)
+-||+|.=..-.+.++|.++ +.++--|.....+++.
T Consensus 63 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~h 98 (171)
T TIGR01119 63 CICGTGVGINNAVNKVPGVR-SALVRDMTSALYAKEE 98 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 56899988888999999999 8887778888888864
No 375
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=50.45 E-value=19 Score=25.32 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|.|+.|||..+++ .-. -++-|+.-|...|
T Consensus 53 ~~~~SVAEiAA~L~l--Plg--VvrVLvsDL~~~G 83 (114)
T PF05331_consen 53 RRPLSVAEIAARLGL--PLG--VVRVLVSDLADAG 83 (114)
T ss_pred CCCccHHHHHHhhCC--Cch--hhhhhHHHHHhCC
Confidence 459999999999999 554 5666678888887
No 376
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=50.23 E-value=14 Score=31.20 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=40.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeC---CCCCCCCc-ccEEE
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGG---DTFKSIPA-ADAIF 196 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~g---d~f~~~P~-aD~~~ 196 (199)
-|+-+| |-|+++.+++++.= .+ ++.+|. ++..+.|++...-.++.. |..++.+. +|+++
T Consensus 171 ~I~G~G-GlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 171 AVVGAG-GLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred EEECCc-HHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEE
Confidence 444455 88889999999877 88 999998 466778887755555543 34444443 46654
No 377
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=50.17 E-value=8.1 Score=32.02 Aligned_cols=54 Identities=13% Similarity=0.037 Sum_probs=34.6
Q ss_pred cceEEEecCCccH-HHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEE----eCCCCCC
Q 037818 133 VKQLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHI----GGDTFKS 188 (199)
Q Consensus 133 ~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~----~gd~f~~ 188 (199)
..+++|||.|.-. |..--++.| +++ ++.-|. |..++.|+++ +||+.+ ..++|+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~-fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~ 170 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWS-FVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDG 170 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTT
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCe-EEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchh
Confidence 5689999988775 666556665 899 999997 5667776642 688776 3467764
No 378
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=50.03 E-value=6.3 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
+...|..+||+.+|. ++. -+.+.|+
T Consensus 18 ~~G~s~~~IA~~lg~--s~s--TV~relk 42 (44)
T PF13936_consen 18 EQGMSIREIAKRLGR--SRS--TVSRELK 42 (44)
T ss_dssp CS---HHHHHHHTT----HH--HHHHHHH
T ss_pred HcCCCHHHHHHHHCc--CcH--HHHHHHh
Confidence 345999999999999 654 5666553
No 379
>PF12728 HTH_17: Helix-turn-helix domain
Probab=49.95 E-value=14 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=14.4
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHH
Q 037818 20 LSASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
+|++|+|+.+|+ ++. .+.+++
T Consensus 2 lt~~e~a~~l~i--s~~--tv~~~~ 22 (51)
T PF12728_consen 2 LTVKEAAELLGI--SRS--TVYRWI 22 (51)
T ss_pred CCHHHHHHHHCc--CHH--HHHHHH
Confidence 578888888888 543 455444
No 380
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=49.71 E-value=49 Score=24.48 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=36.2
Q ss_pred ceEEEecCCccHH--HHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCCcccEEEe
Q 037818 134 KQLVDVGGSAGDC--LRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIPAADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~--~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P~aD~~~l 197 (199)
++||=||||.=.. +..|++... + .++++ |+..+...+.++++.....|-+ .+-.+|+++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga--~-V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGA--F-VTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC--E-EEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 7888899987554 345555443 4 55665 6665555445667766555544 3444677664
No 381
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=49.61 E-value=23 Score=24.14 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=30.2
Q ss_pred EEEecCCccHHHHHHHHHCCC-CCeeeeccch-HHHhcCCCC---CC---ceEEeCCCCC
Q 037818 136 LVDVGGSAGDCLRMILQKHRF-ICEGINFDLP-EVVGEAPSI---LG---VTHIGGDTFK 187 (199)
Q Consensus 136 vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dlp-~v~~~a~~~---~r---i~~~~gd~f~ 187 (199)
++|+|||.|... .+.+..+. .. .+.+|.. ..+..++.. .. +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 44444443 35 6667764 333332211 11 5777777764
No 382
>PF13551 HTH_29: Winged helix-turn helix
Probab=49.55 E-value=13 Score=25.18 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=26.9
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+.+|-.|+.++|+.+|+ ++. -+.++++.....|
T Consensus 6 ~l~~~g~~~~~~ia~~lg~--s~~--Tv~r~~~~~~~~G 40 (112)
T PF13551_consen 6 LLLAEGVSTIAEIARRLGI--SRR--TVYRWLKRYREGG 40 (112)
T ss_pred HHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHccc
Confidence 3445554489999999999 766 8889988777666
No 383
>PRK10870 transcriptional repressor MprA; Provisional
Probab=49.53 E-value=22 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|..+||+.+++ +.. .+.+++.-|...|
T Consensus 69 ~~~it~~eLa~~l~l--~~~--tvsr~v~rLe~kG 99 (176)
T PRK10870 69 NHSIQPSELSCALGS--SRT--NATRIADELEKRG 99 (176)
T ss_pred CCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 367899999999999 665 8999999999999
No 384
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=49.50 E-value=30 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|....+||+.++. ++. -++-.|..|.++|
T Consensus 21 ~~PVgSk~ia~~l~~--s~a--TIRN~M~~Le~lG 51 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR--SPA--TIRNEMADLEELG 51 (78)
T ss_pred CCCcCHHHHHHHHCC--ChH--HHHHHHHHHHHCC
Confidence 379999999999999 776 7888899999888
No 385
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=49.30 E-value=11 Score=30.10 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=32.4
Q ss_pred chhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++++-+...|.. +|+.+.|||+++|+ ... -+..=+..|...|
T Consensus 22 S~vRv~Il~lL~~k~plNvneiAe~lgL--pqs--t~s~~ik~Le~aG 65 (308)
T COG4189 22 SKVRVAILQLLHRKGPLNVNEIAEALGL--PQS--TMSANIKVLEKAG 65 (308)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCC--chh--hhhhhHHHHHhcC
Confidence 4567778888874 89999999999999 554 4444466677666
No 386
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=49.21 E-value=8.5 Score=30.94 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=31.5
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|.+ +..++.|||+.+++ ++. -++|-|..|...|
T Consensus 10 Il~~l~~~~~~~~~ela~~l~v--S~~--TiRRdL~~Le~~g 47 (252)
T PRK10906 10 IIELVKQQGYVSTEELVEHFSV--SPQ--TIRRDLNDLAEQN 47 (252)
T ss_pred HHHHHHHcCCEeHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 4556654 78999999999999 766 8999999999998
No 387
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=49.18 E-value=48 Score=27.92 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH
Q 037818 108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV 168 (199)
Q Consensus 108 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v 168 (199)
+.++...+.......+...+..+....+|+=+|||.-.+-..+.+.||++ .+.|-|..
T Consensus 267 ~~~~~~~~~~~i~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~~---~~~~~p~~ 324 (344)
T PRK13917 267 FYKEQDSVIDEVMSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSDV---EKADESQF 324 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCCe---EEcCChHH
Confidence 33344443443344454444335677889999999999988999999965 46677654
No 388
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=48.98 E-value=17 Score=23.40 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=28.7
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|+.+..|.++|-+.||+ +.. .+...|.-|...|
T Consensus 10 IL~~ls~~c~TLeeL~ekTgi--~k~--~LlV~LsrL~k~G 46 (72)
T PF05584_consen 10 ILIILSKRCCTLEELEEKTGI--SKN--TLLVYLSRLAKRG 46 (72)
T ss_pred HHHHHHhccCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 445566679999999999999 554 6777777777776
No 389
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=48.90 E-value=15 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=24.1
Q ss_pred ceEEEecCCc--cHHHHHHHHHCCCCCeeeeccch
Q 037818 134 KQLVDVGGSA--GDCLRMILQKHRFICEGINFDLP 166 (199)
Q Consensus 134 ~~vvDvGGG~--G~~~~~l~~~~P~l~~~~v~Dlp 166 (199)
.+|+.||.|. |--..-++-++|+++ ++++|..
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~-vtvvd~s 35 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIE-VTVVDIS 35 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceE-EEEEecC
Confidence 3678888764 335556778999999 9999973
No 390
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=48.83 E-value=12 Score=28.46 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=31.5
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.|.+ |-.|-++||..+|+ ... -++|+|..|...|
T Consensus 23 v~~~l~~kge~tDeela~~l~i--~~~--~vrriL~~L~e~~ 60 (176)
T COG1675 23 VVDALLEKGELTDEELAELLGI--KKN--EVRRILYALYEDG 60 (176)
T ss_pred HHHHHHhcCCcChHHHHHHhCc--cHH--HHHHHHHHHHhCC
Confidence 5666666 67999999999999 554 8999999999998
No 391
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=48.80 E-value=15 Score=27.82 Aligned_cols=36 Identities=11% Similarity=-0.215 Sum_probs=30.6
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~ 175 (199)
+-||+|.=..-.+.++|.++ +.++--|.....+++.
T Consensus 63 liCGTGiG~siaANKv~GIR-AA~~~d~~sA~~aR~h 98 (171)
T PRK08622 63 CICGTGVGISNAVNKVPGIR-SALVRDMTSALYAKEE 98 (171)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHh
Confidence 56889988888999999999 8777778888888864
No 392
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=48.68 E-value=20 Score=30.11 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=20.8
Q ss_pred CCcceEEEecCCccH--HHHHHHHHCC-CCC
Q 037818 131 KGVKQLVDVGGSAGD--CLRMILQKHR-FIC 158 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~--~~~~l~~~~P-~l~ 158 (199)
.+..+|+=||||+|. +++.+.+.-| +++
T Consensus 5 ~~~~kvvvlgGGtGl~~lL~gLk~~~~~~iT 35 (323)
T COG0391 5 AKKPKVVVLGGGTGLPKLLSGLKRLLPSEIT 35 (323)
T ss_pred ccCceEEEEcCCCCHHHHHHHHHhhcCceEE
Confidence 344688999999998 6667766664 666
No 393
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=48.59 E-value=9.6 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCCCCChH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYA 56 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g~~~~~ 56 (199)
...|+.+||+.+++ ++. -+.|.+-.+|-.++.
T Consensus 33 ~~~si~elA~~~~v--S~s-----ti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 33 AFMSISELAEKAGV--SPS-----TIVRFCKKLGFSGFK 64 (77)
T ss_dssp CT--HHHHHHHCTS---HH-----HHHHHHHHCTTTCHH
T ss_pred HHccHHHHHHHcCC--CHH-----HHHHHHHHhCCCCHH
Confidence 46899999999999 553 444445555533333
No 394
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=48.52 E-value=30 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=18.8
Q ss_pred CCCcceEEEecCCccH-HHHHHHHHC
Q 037818 130 FKGVKQLVDVGGSAGD-CLRMILQKH 154 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~-~~~~l~~~~ 154 (199)
..+.++||-||+.+|. ++..++.+|
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCcccHHHHHHHHh
Confidence 5677999999999998 777788776
No 395
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=48.42 E-value=12 Score=25.09 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
...|.++||+.+++ +++ .+.++|..
T Consensus 22 ~~ls~~~ia~dL~~--s~~--~le~vL~l 46 (89)
T PF10078_consen 22 SGLSLEQIAADLGT--SPE--HLEQVLNL 46 (89)
T ss_pred cCCCHHHHHHHhCC--CHH--HHHHHHcC
Confidence 56999999999999 776 88887754
No 396
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=48.40 E-value=34 Score=29.32 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.+++.-.+-.+|||+|. ++..+.+.||...
T Consensus 90 r~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~ 132 (379)
T cd02190 90 RKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVY 132 (379)
T ss_pred HHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccc
Confidence 4566778767888999999999983 5556677888764
No 397
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=48.16 E-value=12 Score=32.71 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=26.9
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
+-..|.+||.|+.|||+.+|+ +.. .+.|.|+.|
T Consensus 5 ~~~~L~~g~~~~~eL~~~l~~--sq~--~~s~~L~~L 37 (442)
T PRK09775 5 LTTLLLQGPLSAAELAARLGV--SQA--TLSRLLAAL 37 (442)
T ss_pred HHHHHhcCCCCHHHHHHHhCC--CHH--HHHHHHHHh
Confidence 456778899999999999999 544 677777777
No 398
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=48.08 E-value=16 Score=27.05 Aligned_cols=46 Identities=15% Similarity=0.012 Sum_probs=35.0
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+-||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++.+
T Consensus 67 liCGtGiG~siaANK~~GIR-Aa~~~d~~~A~~ar~hNnaNVL~lGar~ 114 (151)
T PTZ00215 67 LVCGSGIGISIAANKVKGIR-CALCHDHYTARMSRQHNNANVLAFGGRT 114 (151)
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 56899988888999999999 8888888888888764 3444444433
No 399
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=20 Score=29.97 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=36.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC--CCCCeeeeccchHHHhc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH--RFICEGINFDLPEVVGE 171 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~~~v~Dlp~v~~~ 171 (199)
+.+...||-+|||.=.....++..+ ++++ .+=+|.|++++.
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~r 127 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVER 127 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHH
Confidence 4566899999999999999999998 8888 899999988763
No 400
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=48.07 E-value=8.1 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=18.1
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhh-CC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTS-YG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~-~g 51 (199)
+.++.|||+.+|+ + ...+++.|.. .|
T Consensus 3 ~i~V~elAk~l~v--~-----~~~ii~~l~~~~G 29 (54)
T PF04760_consen 3 KIRVSELAKELGV--P-----SKEIIKKLFKELG 29 (54)
T ss_dssp EE-TTHHHHHHSS--S-----HHHHHHHH-HHHT
T ss_pred ceEHHHHHHHHCc--C-----HHHHHHHHHHhCC
Confidence 5788999999999 3 4667777633 55
No 401
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=47.89 E-value=17 Score=30.37 Aligned_cols=29 Identities=28% Similarity=0.293 Sum_probs=23.1
Q ss_pred EEEecCCccH--HHHHHHHHCCCCCee--eeccc
Q 037818 136 LVDVGGSAGD--CLRMILQKHRFICEG--INFDL 165 (199)
Q Consensus 136 vvDvGGG~G~--~~~~l~~~~P~l~~~--~v~Dl 165 (199)
||=+|||+|. +++.|.+...+++ + ++.|-
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~lt-aIVtv~Dd 33 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRIT-AIVTVADD 33 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcE-EEEECCcC
Confidence 4679999998 7778888888888 5 66674
No 402
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=46.77 E-value=30 Score=25.75 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=24.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
.-|+++|=|.|.-=..+.+.+|+=+ ..+||+
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR 60 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRR-IYVFDR 60 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS--EEEEES
T ss_pred CceEEeccCCCccHHHHHHhCCCCe-EEEEee
Confidence 6899999999999999999999999 999997
No 403
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=46.50 E-value=17 Score=22.55 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=17.8
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHH
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRI 43 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rl 43 (199)
.|.++..+||+.+|+ ++. .++++
T Consensus 20 ~g~i~lkdIA~~Lgv--s~~--tIr~W 42 (60)
T PF10668_consen 20 NGKIKLKDIAEKLGV--SES--TIRKW 42 (60)
T ss_pred CCCccHHHHHHHHCC--CHH--HHHHH
Confidence 478999999999999 654 44443
No 404
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=46.07 E-value=11 Score=23.63 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=28.4
Q ss_pred ccccC--CCCCCHHHHHHHcCCCC-CCCcchHHHHHHHHhhCC
Q 037818 12 KVRLA--NTPLSASQILTRILPSG-DGDAENLQRILRLLTSYG 51 (199)
Q Consensus 12 f~~L~--~g~~t~~eLA~~~~~~~-~~~~~~l~rlL~~l~~~g 51 (199)
...|. ++|++..+|++.++... +.....++|-|++|-..|
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 34453 58999999999987621 111247899999998877
No 405
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=45.92 E-value=21 Score=28.23 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=43.1
Q ss_pred HHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH-Hhc----CCCC--CCce
Q 037818 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VGE----APSI--LGVT 179 (199)
Q Consensus 107 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v-~~~----a~~~--~ri~ 179 (199)
.|++.|..+..-....+- .+-+-+.-..||.||||+|.--. ...--|..+ +|.+|-.+- .+. +++. ..+.
T Consensus 52 ~yne~~~~ykrelFs~i~-~~~gk~~K~~vLEvgcGtG~Nfk-fy~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 52 IYNEIADSYKRELFSGIY-YFLGKSGKGDVLEVGCGTGANFK-FYPWKPINS-VTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHhhhH-HHhcccCccceEEecccCCCCcc-cccCCCCce-EEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 456666555332222221 11101233578999999997321 112224555 789996432 222 2222 4555
Q ss_pred -EEeCCCCC-C-CCcc--cEEE
Q 037818 180 -HIGGDTFK-S-IPAA--DAIF 196 (199)
Q Consensus 180 -~~~gd~f~-~-~P~a--D~~~ 196 (199)
|+-++--+ + ++.+ |+++
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred EEEeechhcCcccccCCeeeEE
Confidence 66655543 2 4443 7664
No 406
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=45.62 E-value=42 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.+++...+-++|||+|. ++..+.+.||...
T Consensus 80 r~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~ 122 (382)
T cd06059 80 RKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKIL 122 (382)
T ss_pred HHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccc
Confidence 5667888867888999999998874 3344555787554
No 407
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=45.62 E-value=31 Score=29.29 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=26.1
Q ss_pred CCcceEEEecCCccHH--HHHHHHHCCCCCeeeecc
Q 037818 131 KGVKQLVDVGGSAGDC--LRMILQKHRFICEGINFD 164 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~--~~~l~~~~P~l~~~~v~D 164 (199)
++.-.||-||||+|.+ +..+.++.|.=+ +.++|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~-vgIve 71 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGS-VGIVE 71 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCc-eEEec
Confidence 3556899999999985 457888999888 76666
No 408
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=45.46 E-value=12 Score=30.90 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=49.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P~ 191 (199)
+.+++.+ ...++|||+=+=+|.++...++ .--.+ ++.+|. ...++.++++ ++++++.+|.|+.+..
T Consensus 115 R~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~-gGA~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~ 189 (286)
T PF10672_consen 115 RKWVRKY---AKGKRVLNLFSYTGGFSVAAAA-GGAKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR 189 (286)
T ss_dssp HHHHHHH---CTTCEEEEET-TTTHHHHHHHH-TTESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH
T ss_pred HHHHHHH---cCCCceEEecCCCCHHHHHHHH-CCCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH
Confidence 3444443 3458999999999999998765 33445 899998 4666666642 6899999999974321
Q ss_pred ------ccEEEe
Q 037818 192 ------ADAIFM 197 (199)
Q Consensus 192 ------aD~~~l 197 (199)
-|+|++
T Consensus 190 ~~~~~~fD~IIl 201 (286)
T PF10672_consen 190 LKKGGRFDLIIL 201 (286)
T ss_dssp HHHTT-EEEEEE
T ss_pred HhcCCCCCEEEE
Confidence 288886
No 409
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=44.92 E-value=21 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|.|-+|||..+|+ ++. .+.|.|..|...|
T Consensus 142 ~~~t~~~iA~~lG~--tre--tvsR~l~~l~~~g 171 (193)
T TIGR03697 142 LRLSHQAIAEAIGS--TRV--TITRLLGDLRKKK 171 (193)
T ss_pred CCCCHHHHHHHhCC--cHH--HHHHHHHHHHHCC
Confidence 36899999999999 766 8999999999888
No 410
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=44.87 E-value=30 Score=31.77 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp 166 (199)
.+-..|..+.....|||+++..|.++.-.++..|--+-++.+|+-
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~ 78 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLV 78 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeee
Confidence 455677634677899999999999999999999955534778873
No 411
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=44.81 E-value=15 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=20.3
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 10 GKKVRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 10 glf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
.|...+.+|+ +..+||+..|+ ... -+..++.
T Consensus 14 ~iI~~~e~g~-s~~~ia~~fgv--~~s--Tv~~I~K 44 (53)
T PF04218_consen 14 EIIKRLEEGE-SKRDIAREFGV--SRS--TVSTILK 44 (53)
T ss_dssp HHHHHHHCTT--HHHHHHHHT----CC--HHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHhCC--CHH--HHHHHHH
Confidence 3455566676 99999999999 665 6776653
No 412
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=44.73 E-value=24 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.|.++|++++++ +++ .++++|+.|...|
T Consensus 308 g~~~t~~~La~~l~~--~~~--~v~~iL~~L~~ag 338 (412)
T PRK04214 308 GKALDVDEIRRLEPM--GYD--ELGELLCELARIG 338 (412)
T ss_pred CCCCCHHHHHHHhCC--CHH--HHHHHHHHHHhCC
Confidence 368999999999999 777 8999999999988
No 413
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=44.65 E-value=24 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
.+.|+++||+.+++ ++. .+.|+.+...
T Consensus 20 ~~~~~~~lA~~~~~--S~~--~l~r~f~~~~ 46 (107)
T PRK10219 20 QPLNIDVVAKKSGY--SKW--YLQRMFRTVT 46 (107)
T ss_pred CCCCHHHHHHHHCC--CHH--HHHHHHHHHH
Confidence 57999999999999 665 7777776654
No 414
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=44.60 E-value=25 Score=29.26 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=17.4
Q ss_pred eEEEecCCccH--HHHHHHHHC--CCCC
Q 037818 135 QLVDVGGSAGD--CLRMILQKH--RFIC 158 (199)
Q Consensus 135 ~vvDvGGG~G~--~~~~l~~~~--P~l~ 158 (199)
+|+=+|||+|. +++.+.+.. .+++
T Consensus 2 ~iv~lgGGtG~~~lL~GL~~~~~~~~iT 29 (303)
T PRK13606 2 MITVLSGGTGTAKLLRGLKAVLPPEEIT 29 (303)
T ss_pred eEEEEeCccCHHHHHHHHHhccCCCCeE
Confidence 57778998888 777777774 3555
No 415
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=44.07 E-value=21 Score=26.44 Aligned_cols=38 Identities=13% Similarity=-0.118 Sum_probs=31.9
Q ss_pred EEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC
Q 037818 137 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~ 175 (199)
.=+.||+|.=..-.+.++|.++ +-++--|.....+++.
T Consensus 62 GIliCGTGiG~~iaANKv~Gir-aAl~~D~~sA~~ar~h 99 (151)
T COG0698 62 GILICGTGIGMSIAANKVPGIR-AALVSDPTSAKLAREH 99 (151)
T ss_pred eEEEecCChhHHHHhhccCCeE-EEEecCHHHHHHHHhc
Confidence 3377899998888999999999 8888888888888774
No 416
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=44.07 E-value=13 Score=25.14 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=31.3
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+-|...|.. ||-.+.-||..+++ +.+ .+...|+-|..+|
T Consensus 10 ~~IL~hl~~~~~Dy~k~ia~~l~~--~~~--~v~~~l~~Le~~G 49 (92)
T PF10007_consen 10 LKILQHLKKAGPDYAKSIARRLKI--PLE--EVREALEKLEEMG 49 (92)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 344555554 88899999999999 666 8999999999999
No 417
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=44.04 E-value=46 Score=27.64 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.++....+.++|||+|. ++..+.+.||+..
T Consensus 80 r~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~ 122 (328)
T cd00286 80 RKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRL 122 (328)
T ss_pred HHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccc
Confidence 4566788856788899999998883 5667777888533
No 418
>PF14881 Tubulin_3: Tubulin domain
Probab=44.04 E-value=29 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH----HCCCCCee
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ----KHRFICEG 160 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~----~~P~l~~~ 160 (199)
.+.+++.+|.+++...++|+-+|-|.++..+++ .||... .
T Consensus 64 lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~-i 107 (180)
T PF14881_consen 64 LRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKP-I 107 (180)
T ss_pred HHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCc-e
Confidence 467889999789999999999998887776655 788887 5
No 419
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=43.95 E-value=22 Score=28.51 Aligned_cols=37 Identities=30% Similarity=0.197 Sum_probs=30.4
Q ss_pred cccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|++.|.. |-++..+||+++|+ ++. .+++-++.|.+.|
T Consensus 188 IL~~L~~~egrlse~eLAerlGV--SRs--~ireAlrkLE~aG 226 (251)
T TIGR02787 188 IFEELDGNEGLLVASKIADRVGI--TRS--VIVNALRKLESAG 226 (251)
T ss_pred HHHHhccccccccHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 5566653 78999999999999 665 7888899999888
No 420
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=43.84 E-value=25 Score=26.58 Aligned_cols=30 Identities=7% Similarity=0.155 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.|-++||..+|+ .+. .+.|+|.-|...|
T Consensus 148 ~~~t~~~iA~~lG~--tre--tvsR~l~~l~~~g 177 (202)
T PRK13918 148 IYATHDELAAAVGS--VRE--TVTKVIGELSREG 177 (202)
T ss_pred ecCCHHHHHHHhCc--cHH--HHHHHHHHHHHCC
Confidence 36899999999999 776 8999999999888
No 421
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=43.77 E-value=50 Score=24.82 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=37.7
Q ss_pred ccCchhHHHHHHHHhc--cchhhHHHHhh---hCCCCCCcceEEE--ecCCccH-HHHHHHHHCCCCCeeeeccc
Q 037818 99 GKMPEMNGLMRKAMSG--VSVPFITSVLD---GYNGFKGVKQLVD--VGGSAGD-CLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 99 ~~~~~~~~~f~~~m~~--~~~~~~~~~~~---~~~~~~~~~~vvD--vGGG~G~-~~~~l~~~~P~l~~~~v~Dl 165 (199)
..|+.+.+...++|.. +....+..+.+ ........--||| +|+|+|. +..++.++.|+.+ .+++--
T Consensus 16 dDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~r-ivvLTG 89 (182)
T COG4567 16 DDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMR-IVVLTG 89 (182)
T ss_pred cCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcce-EEEEec
Confidence 3455566677777743 22211111111 1111223346666 5899999 5557788999999 877654
No 422
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=43.71 E-value=31 Score=27.57 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHhhhCCCCCCc--ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCC-----------CC-----CCceEEe
Q 037818 121 TSVLDGYNGFKGV--KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAP-----------SI-----LGVTHIG 182 (199)
Q Consensus 121 ~~~~~~~~~~~~~--~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~-----------~~-----~ri~~~~ 182 (199)
+.++++.. .... .+|||.=.|-|.-+.-++.. ..+ +|.++.-+++...- +. .||+.+.
T Consensus 63 ~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 46667764 4432 59999999999988877754 568 99999865553321 11 5899999
Q ss_pred CCCCCC--CCc--ccEEEe
Q 037818 183 GDTFKS--IPA--ADAIFM 197 (199)
Q Consensus 183 gd~f~~--~P~--aD~~~l 197 (199)
+|..+- .|. .|+|++
T Consensus 139 ~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE
T ss_pred CCHHHHHhhcCCCCCEEEE
Confidence 998873 333 399886
No 423
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=43.71 E-value=19 Score=22.00 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.7
Q ss_pred CCC-CHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPL-SASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~-t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+ |..+||+..++ +.. -+++.|+.|.+.|
T Consensus 22 ~~lps~~~la~~~~v--sr~--tvr~al~~L~~~g 52 (64)
T PF00392_consen 22 DRLPSERELAERYGV--SRT--TVREALRRLEAEG 52 (64)
T ss_dssp SBE--HHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred CEeCCHHHHHHHhcc--CCc--HHHHHHHHHHHCC
Confidence 356 99999999999 554 7888999998877
No 424
>PF14557 AphA_like: Putative AphA-like transcriptional regulator
Probab=43.48 E-value=9.1 Score=28.86 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=33.6
Q ss_pred CCcchhccccccccCCCCCCHHHHHHHcCCCC----CCCcchHHHHHHHHhhCC
Q 037818 2 EDNECREGGKKVRLANTPLSASQILTRILPSG----DGDAENLQRILRLLTSYG 51 (199)
Q Consensus 2 ~~~~A~~lglf~~L~~g~~t~~eLA~~~~~~~----~~~~~~l~rlL~~l~~~g 51 (199)
-...|+++++.-.|+++|.+++++|+.+.-.. -|..+.+.--++.|.-.|
T Consensus 7 ~pre~v~L~vLG~la~~p~~~~~va~~vrh~~sr~~gps~~Ll~~sie~Lr~eG 60 (175)
T PF14557_consen 7 TPREAVRLCVLGTLARGPRRYEEVAGAVRHFASRIWGPSLDLLGTSIELLREEG 60 (175)
T ss_pred CHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhccccccCchhhhhhHHHHHHhcC
Confidence 35678999999999999999999999764300 111124554555555555
No 425
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=43.23 E-value=21 Score=29.79 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=21.9
Q ss_pred EEEecCCccH--HHHHHHHHCCCCCee--eeccc
Q 037818 136 LVDVGGSAGD--CLRMILQKHRFICEG--INFDL 165 (199)
Q Consensus 136 vvDvGGG~G~--~~~~l~~~~P~l~~~--~v~Dl 165 (199)
||=+|||+|. +++.+.+...+++ + ++.|-
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~it-aIVtv~Dd 33 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLT-AIVTVTDD 33 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceE-EEEECCCC
Confidence 4668999998 7778888878888 5 55664
No 426
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=42.81 E-value=29 Score=30.90 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=31.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH----HCCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ----KHRFIC 158 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~----~~P~l~ 158 (199)
++..++.+|.+++...+.|++||.|.++..+++ .||.-.
T Consensus 141 IR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~ 183 (493)
T cd06060 141 LRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKAS 183 (493)
T ss_pred HHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccc
Confidence 357788898789999999999999998887666 477644
No 427
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=42.67 E-value=26 Score=22.94 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=29.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+-++..+.+.+.|=++||+++|+ +.. .+-.-+..|...|
T Consensus 9 ~~ll~~~~~~~~SGe~La~~Lgi--SRt--aVwK~Iq~Lr~~G 47 (79)
T COG1654 9 LLLLLLLTGNFVSGEKLAEELGI--SRT--AVWKHIQQLREEG 47 (79)
T ss_pred HHHHHHcCCCcccHHHHHHHHCc--cHH--HHHHHHHHHHHhC
Confidence 34556666679999999999999 544 6666688888777
No 428
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=42.60 E-value=17 Score=24.45 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=28.6
Q ss_pred hccccccccCC---CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN---TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~---g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++..|+..|.+ .+.++.|||+.+++ ++ ..++.+|...|
T Consensus 10 ~R~~vl~~L~~~yp~~~~~~eIar~v~~--~~-----snV~GaL~G~g 50 (90)
T PF07381_consen 10 VRKKVLEYLCSIYPEPAYPSEIARSVGS--DY-----SNVLGALRGDG 50 (90)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHCC--CH-----HHHHHHHhcCC
Confidence 34456666654 57999999999999 65 56778888777
No 429
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=42.24 E-value=26 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+.|+++||+.+|+ ++. .+.|+......+.
T Consensus 24 ~~~sl~~lA~~~g~--S~~--~l~r~Fk~~~G~s 53 (127)
T PRK11511 24 SPLSLEKVSERSGY--SKW--HLQRMFKKETGHS 53 (127)
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHHHHCcC
Confidence 57999999999999 766 7888877666443
No 430
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=42.24 E-value=18 Score=29.63 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=23.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
.++|+|+|||+|.-.+-.....- .+ +..+|.
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~-~~-~~fqD~ 147 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGA-VS-VHFQDF 147 (282)
T ss_pred CceeEecCCcccccchhhhhhcc-ce-eeeEec
Confidence 38999999999997776665443 55 666665
No 431
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=42.24 E-value=52 Score=23.01 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=34.7
Q ss_pred HhhhCCCCCCcceEEEecCCccH-HHHHHHHHCCCCCeeeeccchHHHhcCC
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDLPEVVGEAP 173 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dlp~v~~~a~ 173 (199)
+++.++.-.+.-.++|+-||+=. .+..+...++++.-.+++++|-+++...
T Consensus 50 ~i~~~~~~~~viil~Dl~GGSp~n~~~~~~~~~~~~~visG~nlpmlle~~~ 101 (122)
T cd00006 50 ALAELDSGEGVLILTDLFGGSPNNAAARLSMEHPPVEVIAGVNLPMLLEAAR 101 (122)
T ss_pred HHHHhCCCCcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEccCHHHHHHHHH
Confidence 34445423566789999666655 5566666668877358999998887654
No 432
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=42.20 E-value=15 Score=22.27 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=24.5
Q ss_pred cccccCCCC-CCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 11 KKVRLANTP-LSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 11 lf~~L~~g~-~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+.|.|-..| .|+.-+|+++++ ++. ...++++-|-
T Consensus 4 Lidll~~~P~Vsa~mva~~L~v--T~~--~A~~li~eLg 38 (54)
T PF11972_consen 4 LIDLLLSRPLVSAPMVAKELGV--TPQ--AAQRLIAELG 38 (54)
T ss_pred HHHHHHhCccccHHHHHHHhCC--CHH--HHHHHHHHhh
Confidence 344454444 899999999999 776 7788776554
No 433
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=42.15 E-value=21 Score=29.71 Aligned_cols=29 Identities=28% Similarity=0.170 Sum_probs=21.5
Q ss_pred EEEecCCccH--HHHHHHHHCCCCCee--eeccc
Q 037818 136 LVDVGGSAGD--CLRMILQKHRFICEG--INFDL 165 (199)
Q Consensus 136 vvDvGGG~G~--~~~~l~~~~P~l~~~--~v~Dl 165 (199)
||=+|||+|. +++.|.+.-.+++ + ++.|-
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~lt-aIVtv~Dd 33 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEIT-AIVTVADD 33 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceE-EEEECCcC
Confidence 4668999998 7778887777887 5 55554
No 434
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.12 E-value=21 Score=20.16 Aligned_cols=15 Identities=0% Similarity=-0.110 Sum_probs=11.4
Q ss_pred CCHHHHHHHcCCCCCCC
Q 037818 20 LSASQILTRILPSGDGD 36 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~ 36 (199)
.|+.|+|+.+|+ ++.
T Consensus 1 ~~~~e~a~~~gv--~~~ 15 (49)
T cd04761 1 YTIGELAKLTGV--SPS 15 (49)
T ss_pred CcHHHHHHHHCc--CHH
Confidence 367889999999 543
No 435
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=41.77 E-value=25 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|-.+||..+|+ ++. .+.|+|..|...|
T Consensus 168 ~~t~~~lA~~lG~--tr~--tvsR~l~~l~~~g 196 (211)
T PRK11753 168 KITRQEIGRIVGC--SRE--MVGRVLKMLEDQG 196 (211)
T ss_pred CCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 7889999999999 776 8999999888766
No 436
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=41.44 E-value=18 Score=26.54 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=32.8
Q ss_pred CCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 141 GSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 141 GG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
||+|.=..-.+.++|.++ +.++--+.....+++. .+|=.+.+.+
T Consensus 63 CGtGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~lG~r~ 108 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMI-AAEVSDERSAYMTRGHNNARMITVGAEI 108 (141)
T ss_pred cCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEEECccc
Confidence 677777778899999999 9888888888888864 3444444443
No 437
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=41.36 E-value=75 Score=26.30 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV 168 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v 168 (199)
.+..+|+=+|||.-.+...+.+.||+.+ ..+.|-|.-
T Consensus 272 ~~~~~Iil~GGGa~ll~~~l~~~f~~~~-i~~~~dp~~ 308 (320)
T TIGR03739 272 ESIQNIVLVGGGAFLFKKAVKAAFPKHR-IVEVDEPMF 308 (320)
T ss_pred CcccEEEEeCCcHHHHHHHHHHHCCCCe-eEecCCcHH
Confidence 3467899899999999999999999988 877777753
No 438
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=41.19 E-value=14 Score=30.03 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=31.7
Q ss_pred ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|.+.|.. +..|+.|||+.+++ ++. -++|=|..|...|
T Consensus 21 ~Il~~L~~~~~vtv~eLa~~l~V--S~~--TIRRDL~~Le~~G 59 (269)
T PRK09802 21 QIIQRLRQQGSVQVNDLSALYGV--STV--TIRNDLAFLEKQG 59 (269)
T ss_pred HHHHHHHHcCCEeHHHHHHHHCC--CHH--HHHHHHHHHHhCC
Confidence 35566654 78999999999999 666 7999999998888
No 439
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=40.98 E-value=23 Score=31.46 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=35.5
Q ss_pred chhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+..+...|.. ++.|..+||+.+++ ++. .+.+.+..|.+.|
T Consensus 5 t~~e~~vL~~L~~~~~~s~~eLA~~l~l--~~~--tVt~~i~~Le~kG 48 (489)
T PRK04172 5 HPNEKKVLKALKELKEATLEELAEKLGL--PPE--AVMRAAEWLEEKG 48 (489)
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhCC
Confidence 3445566677764 78999999999999 766 8999999999999
No 440
>PRK06474 hypothetical protein; Provisional
Probab=40.92 E-value=21 Score=27.06 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=32.6
Q ss_pred hccccccccCC-C-CCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-T-PLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g-~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++-|++.|.+ + +.|+.+|++.+ ++ +.. .+.|-|+.|...|
T Consensus 12 ~R~~Il~~L~~~~~~~ta~el~~~l~~i--s~a--TvYrhL~~L~e~G 55 (178)
T PRK06474 12 VRMKICQVLMRNKEGLTPLELVKILKDV--PQA--TLYRHLQTMVDSG 55 (178)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhcCC--CHH--HHHHHHHHHHHCC
Confidence 45667777864 3 49999999999 56 444 7899999999999
No 441
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=40.84 E-value=72 Score=22.79 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=29.9
Q ss_pred hccccccccC-CCCCCHHHHHHHc----CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRI----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|+-|...|. .++.|+.+|.+.+ ++ ... -+..+|+-|..-|
T Consensus 5 ~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~--~~t--Tv~T~L~rL~~KG 50 (130)
T TIGR02698 5 AEWEVMRVVWTLGETTSRDIIRILAEKKDW--SDS--TIKTLLGRLVDKG 50 (130)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhccCC--cHH--HHHHHHHHHHHCC
Confidence 4555666664 4889999977765 45 333 7888999999888
No 442
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=40.84 E-value=12 Score=28.68 Aligned_cols=37 Identities=5% Similarity=-0.094 Sum_probs=30.1
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .+..++.+||+.+++ ++. -++|=|+.|...|
T Consensus 12 Il~~l~~~~~~~~~~La~~~~v--S~~--TiRRDl~~L~~~g 49 (185)
T PRK04424 12 LQELIEENPFITDEELAEKFGV--SIQ--TIRLDRMELGIPE 49 (185)
T ss_pred HHHHHHHCCCEEHHHHHHHHCc--CHH--HHHHHHHHHhcch
Confidence 445555 488999999999999 666 7999999998765
No 443
>COG5023 Tubulin [Cytoskeleton]
Probab=40.54 E-value=34 Score=29.37 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.+++....=-+|||+|. ++..|+.+||.--
T Consensus 121 rreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~ 163 (443)
T COG5023 121 RREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKI 163 (443)
T ss_pred HHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhh
Confidence 4556777778888888889999986 5667888888754
No 444
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=40.44 E-value=40 Score=21.68 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=22.7
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
|.+.|.. +..|+++|++++|. .+. -++-.|--+
T Consensus 15 li~mL~rp~GATi~ei~~atGW--q~H--TvRgalsg~ 48 (72)
T PF11994_consen 15 LIAMLRRPEGATIAEICEATGW--QPH--TVRGALSGL 48 (72)
T ss_pred HHHHHcCCCCCCHHHHHHhhCC--chh--hHHHHHHHH
Confidence 4455653 67899999999999 776 555444333
No 445
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=40.39 E-value=5.6 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=24.0
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
-++-+...|- ++..|+++||+.+++ ++. -++.-+..|
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~--S~r--ti~~~i~~L 43 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNI--SER--TIKNDINEL 43 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS---HH--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCC--CHH--HHHHHHHHH
Confidence 3445555564 478999999999999 543 455444444
No 446
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=40.34 E-value=35 Score=22.46 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 22 ASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 22 ~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+||+.+++ ++. .+.+.++.|...|
T Consensus 2 ~~ela~~l~i--s~s--tvs~~l~~L~~~g 27 (96)
T smart00529 2 TSEIAERLNV--SPP--TVTQMLKKLEKDG 27 (96)
T ss_pred HHHHHHHhCC--ChH--HHHHHHHHHHHCC
Confidence 5689999999 666 8999999999999
No 447
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=39.72 E-value=28 Score=29.50 Aligned_cols=65 Identities=25% Similarity=0.168 Sum_probs=50.7
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC--C-CcccEEEecC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS--I-PAADAIFMKW 199 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~--~-P~aD~~~l~~ 199 (199)
..+|||.=.|.|-|+..+++.-. .+ ++-+|+ |..++-.+++ ++|+.+.||-.+- + +.+|=++|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~-~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR-PK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC-ce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 58999999999999999886543 34 667887 8877766653 6799999999973 3 4479888863
No 448
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=39.67 E-value=36 Score=29.48 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=25.0
Q ss_pred ceEEEecCCccH--HHHHHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGD--CLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~--~~~~l~~~~P~l~~~~v~Dl 165 (199)
.+||=||||.|. .+..+.+..|+.+ .+++|.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~-I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESD-IIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCC-EEEEEC
Confidence 368889999987 4456777789999 999985
No 449
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=39.58 E-value=17 Score=24.38 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=21.8
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
++..+.+| .|..+||+.+|+ +.. -+.|+.+.+
T Consensus 43 I~~ll~~G-~S~~eIA~~LgI--Srs--TIyRi~R~~ 74 (88)
T TIGR02531 43 VAKMLKQG-KTYSDIEAETGA--STA--TISRVKRCL 74 (88)
T ss_pred HHHHHHCC-CCHHHHHHHHCc--CHH--HHHHHHHhc
Confidence 34444444 799999999999 554 677766643
No 450
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.15 E-value=55 Score=26.15 Aligned_cols=59 Identities=17% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch--------HHHhcCCCCCCceEEeCCCCCC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP--------EVVGEAPSILGVTHIGGDTFKS 188 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp--------~v~~~a~~~~ri~~~~gd~f~~ 188 (199)
.-+.++++|||.=+|.-+.+++.+-|+=-+.+-+|.+ +.++.|.-...|+++.|+-.+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhh
Confidence 4467899999999999999999999993345777764 2333333347889988877764
No 451
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=39.00 E-value=31 Score=30.76 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=25.9
Q ss_pred ceEEEecCC-ccH-HHHHHHHHCCCCCeeeeccchH
Q 037818 134 KQLVDVGGS-AGD-CLRMILQKHRFICEGINFDLPE 167 (199)
Q Consensus 134 ~~vvDvGGG-~G~-~~~~l~~~~P~l~~~~v~Dlp~ 167 (199)
.-|+=|||| .|. .+..|++..|..+ ++++|.-.
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~-V~VlEk~~ 80 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKK-IALIERRS 80 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCE-EEEEecCc
Confidence 578889999 677 4557777789999 99999854
No 452
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=38.74 E-value=18 Score=23.93 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=29.7
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|..|+....||.+.+ ++ ++. -|.+-|+-|...|
T Consensus 10 IL~~l~~g~~rf~el~~~l~~i--s~~--~L~~~L~~L~~~G 47 (90)
T PF01638_consen 10 ILRALFQGPMRFSELQRRLPGI--SPK--VLSQRLKELEEAG 47 (90)
T ss_dssp HHHHHTTSSEEHHHHHHHSTTS---HH--HHHHHHHHHHHTT
T ss_pred HHHHHHhCCCcHHHHHHhcchh--HHH--HHHHHHHHHHHcc
Confidence 4455667999999999999 88 554 7888899999999
No 453
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=38.63 E-value=19 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=31.3
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|.+.|. .+..+.+|||+.+++ ++. -++|-|..|...|
T Consensus 8 ~Il~~l~~~~~~~~~eLa~~l~V--S~~--TiRRdL~~L~~~~ 46 (240)
T PRK10411 8 AIVDLLLNHTSLTTEALAEQLNV--SKE--TIRRDLNELQTQG 46 (240)
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3555665 489999999999999 666 8999999998877
No 454
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=38.53 E-value=6.6 Score=30.97 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=21.0
Q ss_pred CC-CcceEEEecCCccHHHHHHHHHCCCC
Q 037818 130 FK-GVKQLVDVGGSAGDCLRMILQKHRFI 157 (199)
Q Consensus 130 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l 157 (199)
|. ...+++|+|.|.|.....+...+.++
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~feev 137 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEEV 137 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHHH
Confidence 54 46899999999999877766554443
No 455
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=38.27 E-value=31 Score=30.45 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeecc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~D 164 (199)
+...|||||.|+|.++...+++--+- ++.++
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~--vtA~E 96 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADS--VTACE 96 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCe--EEeeh
Confidence 44799999999999999888888443 45554
No 456
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=38.10 E-value=43 Score=29.30 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.+++.-.+-.+|||+|. ++..|...||...
T Consensus 121 r~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~ 163 (431)
T cd02188 121 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKL 163 (431)
T ss_pred HHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcce
Confidence 4455667767888999999999984 5556777888653
No 457
>PF03374 ANT: Phage antirepressor protein KilAC domain; InterPro: IPR005039 This entry is represented by Bacteriophage P1, Ant1 C-terminal domain, which represents the processed Ant2 chain. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Prophages P1 and P7 exist as unit copy DNA plasmids in the bacterial cell. Maintenance of the prophage state requires the continuous expression of two repressors: (i) C1 is a protein which negatively regulates the expression of lytic genes including the C1 inactivator gene coi, and (ii) C4 is an antisense RNA which specifically inhibits the synthesis of an anti-repressor Ant.; GO: 0003677 DNA binding
Probab=37.79 E-value=34 Score=23.45 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=21.3
Q ss_pred cccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 11 KKVRLA--NTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 11 lf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
.+|.+. ++..|+.++|+.+|+ .+. .+.++|+
T Consensus 14 ~~d~~~~~~~~~ti~~~AK~L~i--~~~--~l~~~Lr 46 (111)
T PF03374_consen 14 FYDAFVDSDGLYTIREAAKLLGI--GRN--KLFQWLR 46 (111)
T ss_pred HHHHHHcCCCCccHHHHHHHhCC--CHH--HHHHHHH
Confidence 344443 478999999999999 543 4444444
No 458
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=37.69 E-value=22 Score=26.03 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=32.3
Q ss_pred CCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 141 GSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 141 GG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
||+|.=..-.+.++|.++ +.++--+.....+++. .+|-.+.+.+
T Consensus 62 CGtGiG~siaANKv~GIR-aA~~~d~~~A~~ar~hNnaNVl~lG~r~ 107 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMV-AAEVSDERSAYMTRGHNNARMITMGAEI 107 (141)
T ss_pred cCCCHhHhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEEECccc
Confidence 678877778899999999 8888888888888764 3444444433
No 459
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=37.61 E-value=20 Score=20.86 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
+..+|..|+|+.+|+ ++. .+.++++.
T Consensus 7 ~~gls~~~la~~~gi--s~~--~i~~~~~g 32 (55)
T PF01381_consen 7 EKGLSQKELAEKLGI--SRS--TISRIENG 32 (55)
T ss_dssp HTTS-HHHHHHHHTS---HH--HHHHHHTT
T ss_pred HcCCCHHHHHHHhCC--Ccc--hhHHHhcC
Confidence 356899999999999 554 56665543
No 460
>PHA00542 putative Cro-like protein
Probab=37.59 E-value=14 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=20.1
Q ss_pred ccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 14 RLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 14 ~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
.+.+..+|..+||+.+|+ ++. .+.++++
T Consensus 26 ~l~~~glTq~elA~~lgI--s~~--tIsr~e~ 53 (82)
T PHA00542 26 ALIRAGWSQEQIADATDV--SQP--TICRIYS 53 (82)
T ss_pred HHHHCCCCHHHHHHHHCc--CHH--HHHHHHc
Confidence 344567999999999999 554 5555554
No 461
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=37.48 E-value=29 Score=28.11 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.7
Q ss_pred CCcceEEEecCCc
Q 037818 131 KGVKQLVDVGGSA 143 (199)
Q Consensus 131 ~~~~~vvDvGGG~ 143 (199)
.+...++|||||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 4557999999986
No 462
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=37.37 E-value=33 Score=27.07 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+|..+||+.+++ ++. .+.|.|+.|...|
T Consensus 20 ~~IS~~eLA~~L~i--S~~--Tvsr~Lk~LEe~G 49 (217)
T PRK14165 20 VKISSSEFANHTGT--SSK--TAARILKQLEDEG 49 (217)
T ss_pred CCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45899999999999 666 8999999999999
No 463
>COG4883 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.30 E-value=1.1e+02 Score=25.67 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=52.8
Q ss_pred hhHhhhhhHHHHhhCCCCChhhhhhC-CCcccccc-cCchhHHH---HHHHHhccchhhHHHHhhhCCCCCCcceEEEec
Q 037818 66 ALMSAWPLVHEAVLDPTIEPFVKVHG-EPAYSYYG-KMPEMNGL---MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVG 140 (199)
Q Consensus 66 ~~~~~~~~L~~~lr~g~~~~~~~~~g-~~~~e~~~-~~~~~~~~---f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvG 140 (199)
.+|+-...|.+.+|-.. .||-.-|. +.+.|.+. ++|...+. |.+.............++.|.+|-+..+|||..
T Consensus 67 ahyeil~sltdtvrped-dpfvehyqtp~ileilyeed~~f~ksv~kfie~ieksealigke~irryggfygptcvvdfa 145 (500)
T COG4883 67 AHYEILTSLTDTVRPED-DPFVEHYQTPPILEILYEEDPAFHKSVMKFIEEIEKSEALIGKESIRRYGGFYGPTCVVDFA 145 (500)
T ss_pred hHHHHHHhhhcccCCCC-CchhhhccCchHHHHHHhcCHHHHHHHHHHHHHHhHHHhhhhHHHHHHhcCccCCceEEEEE
Confidence 35667788899988544 66765554 44556554 36655444 444444444444455667777788999999976
Q ss_pred ---CCccHHHHHHHH
Q 037818 141 ---GSAGDCLRMILQ 152 (199)
Q Consensus 141 ---GG~G~~~~~l~~ 152 (199)
|.+-.....+++
T Consensus 146 l~pgstsnvvnrilk 160 (500)
T COG4883 146 LVPGSTSNVVNRILK 160 (500)
T ss_pred ecCCchHHHHHHHHH
Confidence 444445555554
No 464
>PTZ00387 epsilon tubulin; Provisional
Probab=37.20 E-value=47 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=28.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccH-----HHHHHHHHCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGD-----CLRMILQKHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~-----~~~~l~~~~P~l~ 158 (199)
+..++.+|.+.+...+-.+|||+|. ++..+.+.||...
T Consensus 122 r~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~ 164 (465)
T PTZ00387 122 RRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVF 164 (465)
T ss_pred HHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCc
Confidence 4667788867888899999999984 4456666888663
No 465
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=37.01 E-value=26 Score=31.20 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=13.7
Q ss_pred hhhCCCCCCcceEEEecCCccH
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGD 145 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~ 145 (199)
...++ ..+...|+|||||+=.
T Consensus 125 ~~~l~-~~~~~lviDIGGGStE 145 (496)
T PRK11031 125 AHTTG-GADQRLVVDIGGASTE 145 (496)
T ss_pred hhccC-CCCCEEEEEecCCeee
Confidence 33444 4334689999999843
No 466
>PHA01634 hypothetical protein
Probab=36.86 E-value=31 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.5
Q ss_pred cceEEEecCCccHHHHHHHHH
Q 037818 133 VKQLVDVGGSAGDCLRMILQK 153 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~ 153 (199)
.++|+|||++.|.-++-++-+
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~ 49 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLR 49 (156)
T ss_pred CCEEEEecCCccchhhHHhhc
Confidence 389999999999988877644
No 467
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=36.73 E-value=32 Score=26.86 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.|-++||..+|+ ++. .+.|+|..|...|
T Consensus 178 i~lt~~~IA~~lGi--sre--tlsR~L~~L~~~G 207 (230)
T PRK09391 178 LPMSRRDIADYLGL--TIE--TVSRALSQLQDRG 207 (230)
T ss_pred ecCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 36889999999999 776 8999999998887
No 468
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=36.65 E-value=21 Score=26.18 Aligned_cols=44 Identities=9% Similarity=0.028 Sum_probs=31.7
Q ss_pred CCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 141 GSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 141 GG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
||+|.=..-.+.++|.++ +.++--+.....+++. .+|=.+.+.+
T Consensus 63 CGTGiG~siaANK~~GIR-AA~~~d~~~A~~ar~hNnaNVL~lG~r~ 108 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMV-AAEVSDERSAYMTRGHNNARMITMGSEI 108 (142)
T ss_pred cCCChhhhhhhhcCCCeE-EEEECCHHHHHHHHHHcCCcEEEECccc
Confidence 677777778899999999 8777778888888764 3443334433
No 469
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=36.64 E-value=51 Score=24.48 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCcceEEEecCCccH--------------HHHHHHHHCCCCCeeeeccc
Q 037818 131 KGVKQLVDVGGSAGD--------------CLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~--------------~~~~l~~~~P~l~~~~v~Dl 165 (199)
.+...+||+||+.=. -........|+++ ++++|.
T Consensus 34 ~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~-vIlvd~ 81 (153)
T PF00549_consen 34 GGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVK-VILVDI 81 (153)
T ss_dssp CTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTES-EEEEEE
T ss_pred CCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCcc-EEEEEe
Confidence 345899999998872 3345556889999 999996
No 470
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=36.45 E-value=32 Score=26.73 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|+|-++||..+|+ ++. .+.|+|..|...|
T Consensus 183 ~~lt~~~iA~~lG~--sr~--tvsR~l~~l~~~g 212 (235)
T PRK11161 183 LTMTRGDIGNYLGL--TVE--TISRLLGRFQKSG 212 (235)
T ss_pred ccccHHHHHHHhCC--cHH--HHHHHHHHHHHCC
Confidence 36899999999999 766 8999999999888
No 471
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=36.30 E-value=51 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++....+||+.+++ .|. .+...++-|...|
T Consensus 22 ~~~~~~~diA~~L~V--sp~--sVt~ml~rL~~~G 52 (154)
T COG1321 22 KGFARTKDIAERLKV--SPP--SVTEMLKRLERLG 52 (154)
T ss_pred cCcccHHHHHHHhCC--CcH--HHHHHHHHHHHCC
Confidence 589999999999999 776 8899999999999
No 472
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=36.24 E-value=43 Score=30.16 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+++||+++|. ..+...+..+||.|++.+
T Consensus 477 ~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~n~ 508 (528)
T PRK14096 477 GELSIEEIAAALGA--PEQVETIYKILRHLAANN 508 (528)
T ss_pred CCCCHHHHHHHcCC--CccHHHHHHHHHHHhcCC
Confidence 78999999999999 444458999999999875
No 473
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=36.03 E-value=22 Score=24.65 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=33.0
Q ss_pred HhhhCCCCCCcceEEEecCCccH-HHHHHHHHCCCCCeeeeccchHHHhcC
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDLPEVVGEA 172 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dlp~v~~~a 172 (199)
.++.++.-.+.-.+.|++||+-. -+......+|+++-...+++|-+++..
T Consensus 50 ~i~~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G~Nlpmlle~~ 100 (116)
T PF03610_consen 50 AIEELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISGVNLPMLLEAL 100 (116)
T ss_dssp HHHHCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES--HHHHHHHH
T ss_pred HHHhccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEecccHHHHHHHH
Confidence 34555423456788999999877 445666677787635889999887654
No 474
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=35.89 E-value=26 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
...|..+||+.+|+ ++. .+.+.+.-
T Consensus 25 ~~~~~~~ia~~~~~--s~~--~i~~~~~~ 49 (55)
T cd06171 25 EGLSYEEIAEILGI--SRS--TVRQRLHR 49 (55)
T ss_pred cCCCHHHHHHHHCc--CHH--HHHHHHHH
Confidence 45899999999999 655 66666543
No 475
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=35.73 E-value=27 Score=24.80 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=17.6
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 20 LSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
+|.+|||+.+|+ ... -+.||.|-
T Consensus 1 MT~eELA~~tG~--srQ--TINrWvRk 23 (122)
T PF07037_consen 1 MTPEELAELTGY--SRQ--TINRWVRK 23 (122)
T ss_pred CCHHHHHHHhCc--cHH--HHHHHHHh
Confidence 589999999999 433 67777653
No 476
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=35.71 E-value=18 Score=29.11 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=31.8
Q ss_pred ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|.+.|.+ +..++.|||+.+++ ++. -++|=|..|...|
T Consensus 9 ~Il~~L~~~~~v~v~eLa~~l~V--S~~--TIRRDL~~Le~~g 47 (256)
T PRK10434 9 AILEYLQKQGKTSVEELAQYFDT--TGT--TIRKDLVILEHAG 47 (256)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 35566764 88999999999999 666 7889999999888
No 477
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=35.22 E-value=46 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=18.8
Q ss_pred CCCcceEEEecC-------------------------CccHHHHHHHH
Q 037818 130 FKGVKQLVDVGG-------------------------SAGDCLRMILQ 152 (199)
Q Consensus 130 ~~~~~~vvDvGG-------------------------G~G~~~~~l~~ 152 (199)
++...+|+|||| |+|.|+-.+++
T Consensus 95 ~p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~ 142 (262)
T TIGR02261 95 NPEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIAR 142 (262)
T ss_pred CCCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHH
Confidence 456789999996 99999887776
No 478
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=35.21 E-value=33 Score=28.54 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.5
Q ss_pred EEEecCCccH--HHHHHHHHCC--CCC
Q 037818 136 LVDVGGSAGD--CLRMILQKHR--FIC 158 (199)
Q Consensus 136 vvDvGGG~G~--~~~~l~~~~P--~l~ 158 (199)
|+=+|||+|. +++.+.+..| +++
T Consensus 1 Iv~lgGGtG~~~lL~GL~~~~~~~~lT 27 (303)
T cd07186 1 IVVLSGGTGGAKLLRGLKRVLDPEELT 27 (303)
T ss_pred CEEEeCCccHHHHHHHHHhCCCCCceE
Confidence 3568888888 7777777775 455
No 479
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=35.20 E-value=35 Score=28.66 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCcceEEEecCCccHHHHHH--------HHHC--------CCCCeeeeccchHH-----HhcCCC-------CCC--ce
Q 037818 130 FKGVKQLVDVGGSAGDCLRMI--------LQKH--------RFICEGINFDLPEV-----VGEAPS-------ILG--VT 179 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l--------~~~~--------P~l~~~~v~Dlp~v-----~~~a~~-------~~r--i~ 179 (199)
..+.-+|+|+||.+|.-+..+ .+++ |.+. ++.-|+|.. ...... ... +.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 466679999999999844433 2333 3456 888899831 111111 123 46
Q ss_pred EEeCCCCCC-CCcc--cEEE
Q 037818 180 HIGGDTFKS-IPAA--DAIF 196 (199)
Q Consensus 180 ~~~gd~f~~-~P~a--D~~~ 196 (199)
.++|.|++. +|.. |+++
T Consensus 93 gvpgSFy~rLfP~~Svh~~~ 112 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGH 112 (334)
T ss_dssp EEES-TTS--S-TT-EEEEE
T ss_pred ecCchhhhccCCCCceEEEE
Confidence 678999986 8874 6554
No 480
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=35.12 E-value=36 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=22.2
Q ss_pred eEEEecCCccH--HHHHHHHHCCC-CCeeeeccch
Q 037818 135 QLVDVGGSAGD--CLRMILQKHRF-ICEGINFDLP 166 (199)
Q Consensus 135 ~vvDvGGG~G~--~~~~l~~~~P~-l~~~~v~Dlp 166 (199)
.|+=||||+.. .+..|++.+|+ ++ +++++.|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~-v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALS-VTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSE-EEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcE-EEEEecC
Confidence 36779999877 44577888888 88 9999976
No 481
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.96 E-value=14 Score=30.48 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=39.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC-CCeeeeccchHHHhcCC----CC-----CCceEEeCCCCC-CCCc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDLPEVVGEAP----SI-----LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dlp~v~~~a~----~~-----~ri~~~~gd~f~-~~P~ 191 (199)
+...||=+|+|-=. ++.-=.+|. ++ ..=+|+|+|++.=+ +. .++++++.||++ ++|.
T Consensus 92 g~~qvViLgaGLDT--RayRl~~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 92 GIRQVVILGAGLDT--RAYRLDWPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred cccEEEEecccccc--ceeecCCCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 36899999886543 333335554 66 77788999998533 22 389999999994 5554
No 482
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=34.45 E-value=39 Score=24.29 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=17.6
Q ss_pred EecCCcc--HHHHHHH--HHCCCCCeeeeccc-hHH
Q 037818 138 DVGGSAG--DCLRMIL--QKHRFICEGINFDL-PEV 168 (199)
Q Consensus 138 DvGGG~G--~~~~~l~--~~~P~l~~~~v~Dl-p~v 168 (199)
|||++.| .....+. +..|..+ ++.|+- |..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~-v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGR-VHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SE-EEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCE-EEEEECCHHH
Confidence 8999999 5555544 5678888 888884 443
No 483
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=34.39 E-value=26 Score=20.39 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
...|.+|||+.+|+ ++. .+...+
T Consensus 25 ~g~s~~eIa~~l~~--s~~--~v~~~l 47 (54)
T PF08281_consen 25 QGMSYAEIAEILGI--SES--TVKRRL 47 (54)
T ss_dssp S---HHHHHHHCTS---HH--HHHHHH
T ss_pred HCcCHHHHHHHHCc--CHH--HHHHHH
Confidence 46899999999999 655 555544
No 484
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=34.31 E-value=42 Score=26.79 Aligned_cols=48 Identities=29% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHh
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVG 170 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~ 170 (199)
..+++.+. -....+.+|.-=|.|...+.+++++|+++ ...+|..++..
T Consensus 33 devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k-~yalDrDP~A~ 80 (303)
T KOG2782|consen 33 DEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELK-NYALDRDPVAR 80 (303)
T ss_pred hhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhh-hhhhccChHHH
Confidence 34444443 33558999999999999999999999999 88899865543
No 485
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=34.25 E-value=49 Score=26.90 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHcCCCCCCCcchHHHHHH-HHhhCC
Q 037818 16 ANTPLSASQILTRILPSGDGDAENLQRILR-LLTSYG 51 (199)
Q Consensus 16 ~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~-~l~~~g 51 (199)
.+++.+++++|+.+|. ++. .+.++++ .|+..|
T Consensus 252 ~~~~~~~~~ia~~lg~--~~~--~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 252 QGGPVGLKTLAAALGE--DAD--TIEDVYEPYLLQIG 284 (305)
T ss_pred CCCcccHHHHHHHhCC--Ccc--hHHHhhhHHHHHcC
Confidence 3467888888888888 666 7777777 577666
No 486
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=34.20 E-value=28 Score=21.80 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=14.7
Q ss_pred CHHHHHHHcCCCCCCCcchHHHHH
Q 037818 21 SASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 21 t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
|..|||+++|+ +.. .+.|+|
T Consensus 2 t~~~iA~~~gv--S~~--TVSr~l 21 (70)
T smart00354 2 TIKDVARLAGV--SKA--TVSRVL 21 (70)
T ss_pred CHHHHHHHHCC--CHH--HHHHHH
Confidence 67899999999 544 555555
No 487
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=33.89 E-value=31 Score=19.98 Aligned_cols=23 Identities=4% Similarity=-0.093 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
..+|.+++|+.+|+ ++. .+.++.
T Consensus 14 ~gltq~~lA~~~gv--s~~--~vs~~e 36 (58)
T TIGR03070 14 LGLTQADLADLAGV--GLR--FIRDVE 36 (58)
T ss_pred cCCCHHHHHHHhCC--CHH--HHHHHH
Confidence 56899999999999 554 555554
No 488
>PF14502 HTH_41: Helix-turn-helix domain
Probab=33.81 E-value=71 Score=18.82 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-.|++|+++++++ .-- -++.-|..|...|
T Consensus 5 Ri~tI~e~~~~~~v--s~G--tiQ~Alk~Le~~g 34 (48)
T PF14502_consen 5 RIPTISEYSEKFGV--SRG--TIQNALKFLEENG 34 (48)
T ss_pred ccCCHHHHHHHhCc--chh--HHHHHHHHHHHCC
Confidence 34789999999999 444 6788888887766
No 489
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=33.44 E-value=18 Score=19.93 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=9.5
Q ss_pred CHHHHHHHcCC
Q 037818 21 SASQILTRILP 31 (199)
Q Consensus 21 t~~eLA~~~~~ 31 (199)
|+.|+|+.+|+
T Consensus 1 ti~e~A~~~gv 11 (38)
T PF00376_consen 1 TIGEVAKLLGV 11 (38)
T ss_dssp EHHHHHHHHTS
T ss_pred CHHHHHHHHCC
Confidence 57899999999
No 490
>PLN02206 UDP-glucuronate decarboxylase
Probab=33.41 E-value=94 Score=27.15 Aligned_cols=62 Identities=26% Similarity=0.124 Sum_probs=36.7
Q ss_pred cceEEEecCCccHHHHHHHHHC--CCCCeeeeccch-----HHHhcCCCCCCceEEeCCCCCCCCc-ccEEE
Q 037818 133 VKQLVDVGGSAGDCLRMILQKH--RFICEGINFDLP-----EVVGEAPSILGVTHIGGDTFKSIPA-ADAIF 196 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~--P~l~~~~v~Dlp-----~v~~~a~~~~ri~~~~gd~f~~~P~-aD~~~ 196 (199)
..+|+ |=||+|..+..++++. -+.+ ++++|.. +.+.......+++++.+|..++.-. .|+|+
T Consensus 119 ~~kIL-VTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~Vi 188 (442)
T PLN02206 119 GLRVV-VTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIY 188 (442)
T ss_pred CCEEE-EECcccHHHHHHHHHHHHCcCE-EEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEE
Confidence 35666 6678888777777644 2445 7777742 1111111236789999999875333 36554
No 491
>PRK10854 exopolyphosphatase; Provisional
Probab=33.33 E-value=30 Score=30.92 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=10.8
Q ss_pred CCcceEEEecCCcc
Q 037818 131 KGVKQLVDVGGSAG 144 (199)
Q Consensus 131 ~~~~~vvDvGGG~G 144 (199)
.+...|+|||||+=
T Consensus 136 ~~~~lvvDIGGGSt 149 (513)
T PRK10854 136 KGRKLVIDIGGGST 149 (513)
T ss_pred CCCeEEEEeCCCeE
Confidence 34468999999973
No 492
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=33.28 E-value=33 Score=21.00 Aligned_cols=20 Identities=5% Similarity=-0.110 Sum_probs=14.2
Q ss_pred CHHHHHHHcCCCCCCCcchHHHHH
Q 037818 21 SASQILTRILPSGDGDAENLQRIL 44 (199)
Q Consensus 21 t~~eLA~~~~~~~~~~~~~l~rlL 44 (199)
|+.|+|+.+|+ ++. .++++.
T Consensus 2 s~~eva~~~gv--s~~--tlr~~~ 21 (70)
T smart00422 2 TIGEVAKLAGV--SVR--TLRYYE 21 (70)
T ss_pred CHHHHHHHHCc--CHH--HHHHHH
Confidence 68899999999 654 455443
No 493
>PRK04217 hypothetical protein; Provisional
Probab=33.15 E-value=27 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=20.3
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
++..+.....|.+|||+.+|+ +.. .+.+.+.
T Consensus 50 ai~l~~~eGlS~~EIAk~LGI--S~s--TV~r~L~ 80 (110)
T PRK04217 50 ALRLVDYEGLTQEEAGKRMGV--SRG--TVWRALT 80 (110)
T ss_pred HHHHHHHcCCCHHHHHHHHCc--CHH--HHHHHHH
Confidence 333333356899999999999 554 5555543
No 494
>PRK06847 hypothetical protein; Provisional
Probab=33.10 E-value=60 Score=27.04 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=26.6
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
...|+=||||.+.++.++.-+.-+++ ++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEec
Confidence 45788899999998887777777899 999985
No 495
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=32.91 E-value=34 Score=21.85 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=30.9
Q ss_pred cccccccC---CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA---NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~---~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-+.+.|+ ..+.+-.+|++.+|. |+. .+...+..|...|
T Consensus 5 ~~~Le~I~rsR~~Gi~q~~L~~~~~~--D~r--~i~~~~k~L~~~g 46 (75)
T PF04182_consen 5 YCLLERIARSRYNGITQSDLSKLLGI--DPR--SIFYRLKKLEKKG 46 (75)
T ss_pred HHHHHHHHhcCCCCEehhHHHHHhCC--Cch--HHHHHHHHHHHCC
Confidence 33455554 256889999999999 877 8999999999888
No 496
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=32.59 E-value=20 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=31.9
Q ss_pred cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|.+ |..+++|||+.+++ ++. -++|=|+.|...|
T Consensus 10 Il~~l~~~g~v~v~eLa~~~~V--S~~--TIRRDL~~Le~~g 47 (253)
T COG1349 10 ILELLKEKGKVSVEELAELFGV--SEM--TIRRDLNELEEQG 47 (253)
T ss_pred HHHHHHHcCcEEHHHHHHHhCC--CHH--HHHHhHHHHHHCC
Confidence 5566664 89999999999999 776 8899999999998
No 497
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=32.43 E-value=53 Score=18.65 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=20.2
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
++..+. ...|..+||+.+++ ++. .+.+.+.
T Consensus 11 i~~~~~-~g~s~~eia~~l~i--s~~--tv~~~~~ 40 (58)
T smart00421 11 VLRLLA-EGLTNKEIAERLGI--SEK--TVKTHLS 40 (58)
T ss_pred HHHHHH-cCCCHHHHHHHHCC--CHH--HHHHHHH
Confidence 444443 34899999999999 555 5555543
No 498
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=32.42 E-value=35 Score=27.70 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=31.7
Q ss_pred hccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+..+.-.|.+||.|.+||-..+++ ++. .+..=+.-|...|
T Consensus 14 kRk~lLllL~egPkti~EI~~~l~v--s~~--ai~pqiKkL~~~~ 54 (260)
T COG4742 14 KRKDLLLLLKEGPKTIEEIKNELNV--SSS--AILPQIKKLKDKG 54 (260)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCC--CcH--HHHHHHHHHhhCC
Confidence 3455667788999999999999999 665 6666666666666
No 499
>PRK06475 salicylate hydroxylase; Provisional
Probab=32.37 E-value=51 Score=27.99 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=27.8
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccch
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp 166 (199)
++|+=||||.+.++.+++-+.+.++ ++++|.-
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA-VTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 5688899999999998888888999 9999963
No 500
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=32.34 E-value=66 Score=28.25 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHH----HCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ----KHRFIC 158 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~----~~P~l~ 158 (199)
+..++.+|..++.+.++||-+|-|.++.++++ .++...
T Consensus 195 r~~VEECD~lQGFq~l~Did~GfgG~as~~le~l~DEys~~~ 236 (483)
T KOG2530|consen 195 RFYVEECDTLQGFQLLSDIDDGFGGFASKLLEELQDEYSKKA 236 (483)
T ss_pred HHHHHhcccccceEEEEecCCCchhHHHHHHHHHHHhhcCCc
Confidence 46678899789999999999999998887766 566666
Done!