Query 037818
Match_columns 199
No_of_seqs 124 out of 1096
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037818.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037818hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 9.2E-37 3.2E-41 255.1 10.9 188 4-199 26-252 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 1.5E-34 5E-39 242.7 16.5 194 4-199 38-267 (364)
3 3lst_A CALO1 methyltransferase 100.0 1.3E-33 4.4E-38 235.4 16.8 189 4-199 40-255 (348)
4 3reo_A (ISO)eugenol O-methyltr 100.0 1.3E-33 4.3E-38 237.3 15.9 192 4-199 39-269 (368)
5 3i53_A O-methyltransferase; CO 100.0 9.2E-34 3.2E-38 234.6 8.6 189 4-199 23-243 (332)
6 3gwz_A MMCR; methyltransferase 100.0 5.8E-33 2E-37 233.2 11.8 189 4-199 56-276 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 2.8E-31 9.5E-36 222.0 12.8 191 4-199 28-259 (358)
8 2ip2_A Probable phenazine-spec 100.0 1.9E-31 6.6E-36 220.6 11.4 186 4-199 26-241 (334)
9 1fp2_A Isoflavone O-methyltran 100.0 3.5E-31 1.2E-35 220.9 13.0 190 4-199 34-254 (352)
10 1fp1_D Isoliquiritigenin 2'-O- 100.0 1.8E-30 6E-35 218.2 14.5 193 4-199 42-275 (372)
11 1qzz_A RDMB, aclacinomycin-10- 100.0 1.6E-29 5.5E-34 212.0 10.4 189 4-199 34-256 (374)
12 3dp7_A SAM-dependent methyltra 100.0 8.1E-30 2.8E-34 213.7 8.1 186 4-199 33-256 (363)
13 1tw3_A COMT, carminomycin 4-O- 100.0 3.9E-29 1.3E-33 208.7 10.3 189 4-199 37-257 (360)
14 1x19_A CRTF-related protein; m 100.0 1.8E-28 6E-33 205.0 13.4 178 4-199 49-264 (359)
15 2r3s_A Uncharacterized protein 99.9 1.5E-27 5.1E-32 197.0 11.0 183 4-199 24-240 (335)
16 3mcz_A O-methyltransferase; ad 99.9 4.1E-27 1.4E-31 196.0 12.1 180 4-199 42-256 (352)
17 2qm3_A Predicted methyltransfe 99.0 3.9E-11 1.3E-15 100.5 0.2 162 10-198 47-248 (373)
18 1ve3_A Hypothetical protein PH 98.7 9.7E-09 3.3E-13 79.1 3.7 63 133-198 39-110 (227)
19 3dtn_A Putative methyltransfer 98.7 6.5E-08 2.2E-12 75.0 7.9 76 122-198 34-116 (234)
20 4gek_A TRNA (CMO5U34)-methyltr 98.6 3.6E-08 1.2E-12 78.6 5.3 67 131-198 69-146 (261)
21 3ege_A Putative methyltransfer 98.6 2.3E-07 7.8E-12 73.4 8.5 74 121-198 24-101 (261)
22 1yb2_A Hypothetical protein TA 98.5 8.2E-08 2.8E-12 76.7 5.7 74 122-197 101-185 (275)
23 3mb5_A SAM-dependent methyltra 98.5 4.9E-08 1.7E-12 76.8 4.2 77 120-198 82-169 (255)
24 3e05_A Precorrin-6Y C5,15-meth 98.5 1.6E-07 5.6E-12 71.4 7.0 75 122-198 31-115 (204)
25 3vc1_A Geranyl diphosphate 2-C 98.5 1.9E-07 6.6E-12 75.8 7.8 89 107-198 93-192 (312)
26 3dlc_A Putative S-adenosyl-L-m 98.5 7.7E-08 2.6E-12 73.3 4.5 74 121-198 34-118 (219)
27 1jg1_A PIMT;, protein-L-isoasp 98.5 1E-07 3.5E-12 74.3 4.9 76 120-198 80-165 (235)
28 1vl5_A Unknown conserved prote 98.5 1.3E-07 4.6E-12 74.5 5.3 75 120-198 26-110 (260)
29 3kr9_A SAM-dependent methyltra 98.5 8E-08 2.7E-12 75.0 3.7 65 132-197 15-90 (225)
30 3g5t_A Trans-aconitate 3-methy 98.5 4.8E-07 1.6E-11 72.9 8.3 90 106-198 12-120 (299)
31 3ujc_A Phosphoethanolamine N-m 98.5 3E-07 1E-11 72.3 6.9 75 121-198 45-127 (266)
32 3dh0_A SAM dependent methyltra 98.5 1.4E-07 4.9E-12 72.2 4.7 76 121-198 27-113 (219)
33 3mgg_A Methyltransferase; NYSG 98.4 2.6E-07 9E-12 73.4 6.2 68 130-198 35-112 (276)
34 3f4k_A Putative methyltransfer 98.4 4.4E-07 1.5E-11 71.2 7.1 75 122-198 36-121 (257)
35 3ou2_A SAM-dependent methyltra 98.4 5.3E-07 1.8E-11 68.7 7.4 74 122-198 36-114 (218)
36 3g07_A 7SK snRNA methylphospha 98.4 3.4E-07 1.2E-11 73.8 6.5 42 131-173 45-87 (292)
37 1yzh_A TRNA (guanine-N(7)-)-me 98.4 2.7E-07 9.3E-12 70.8 5.6 66 132-198 41-118 (214)
38 3g5l_A Putative S-adenosylmeth 98.4 3.6E-07 1.2E-11 71.7 6.4 74 122-198 35-115 (253)
39 3bus_A REBM, methyltransferase 98.4 4E-07 1.4E-11 72.1 6.7 75 121-198 51-136 (273)
40 2p35_A Trans-aconitate 2-methy 98.4 4.2E-07 1.4E-11 71.3 6.7 75 122-198 24-102 (259)
41 3gu3_A Methyltransferase; alph 98.4 2.9E-07 1E-11 73.7 5.9 68 130-198 20-96 (284)
42 4hg2_A Methyltransferase type 98.4 5E-07 1.7E-11 71.8 7.1 63 133-198 40-106 (257)
43 3kkz_A Uncharacterized protein 98.4 4.2E-07 1.4E-11 71.9 6.6 67 130-198 44-121 (267)
44 3b3j_A Histone-arginine methyl 98.4 3.3E-07 1.1E-11 79.1 6.4 75 121-198 148-231 (480)
45 1nkv_A Hypothetical protein YJ 98.4 5.5E-07 1.9E-11 70.6 7.1 75 121-198 26-110 (256)
46 3uwp_A Histone-lysine N-methyl 98.4 2.2E-07 7.6E-12 78.4 5.0 76 121-198 163-259 (438)
47 4dcm_A Ribosomal RNA large sub 98.4 5.1E-07 1.7E-11 75.6 6.4 75 122-198 213-299 (375)
48 3lec_A NADB-rossmann superfami 98.4 2E-07 6.9E-12 72.9 3.7 65 132-197 21-96 (230)
49 2o57_A Putative sarcosine dime 98.4 4.2E-07 1.4E-11 73.0 5.5 67 130-198 80-157 (297)
50 3hm2_A Precorrin-6Y C5,15-meth 98.4 2.8E-07 9.6E-12 68.1 4.0 73 123-198 17-101 (178)
51 1nv8_A HEMK protein; class I a 98.4 2.1E-07 7E-12 75.0 3.5 65 132-198 123-199 (284)
52 2b3t_A Protein methyltransfera 98.3 6E-07 2.1E-11 71.6 6.0 66 132-198 109-183 (276)
53 3mq2_A 16S rRNA methyltransfer 98.3 9.5E-07 3.2E-11 67.7 6.9 66 130-196 25-103 (218)
54 3jwg_A HEN1, methyltransferase 98.3 2.8E-07 9.7E-12 70.7 3.8 67 131-198 28-109 (219)
55 3pfg_A N-methyltransferase; N, 98.3 5.3E-07 1.8E-11 71.1 5.4 65 131-198 49-117 (263)
56 3bkw_A MLL3908 protein, S-aden 98.3 9.6E-07 3.3E-11 68.5 6.8 75 121-198 33-114 (243)
57 3gnl_A Uncharacterized protein 98.3 2.8E-07 9.6E-12 72.7 3.7 65 132-197 21-96 (244)
58 2pwy_A TRNA (adenine-N(1)-)-me 98.3 1E-06 3.4E-11 69.1 6.8 95 101-198 63-173 (258)
59 3jwh_A HEN1; methyltransferase 98.3 4E-07 1.4E-11 69.8 4.3 67 131-198 28-109 (217)
60 2qe6_A Uncharacterized protein 98.3 6.2E-07 2.1E-11 71.8 5.4 56 131-187 76-139 (274)
61 1xxl_A YCGJ protein; structura 98.3 6.9E-07 2.4E-11 69.6 5.5 75 120-198 10-94 (239)
62 3q87_B N6 adenine specific DNA 98.3 1E-06 3.5E-11 65.3 5.8 59 133-198 24-85 (170)
63 2yxd_A Probable cobalt-precorr 98.3 3.5E-07 1.2E-11 67.6 3.2 72 123-198 27-107 (183)
64 1jsx_A Glucose-inhibited divis 98.3 4.9E-07 1.7E-11 68.7 4.0 65 133-198 66-139 (207)
65 3dli_A Methyltransferase; PSI- 98.3 1.8E-06 6.2E-11 67.2 7.3 72 122-198 31-108 (240)
66 1af7_A Chemotaxis receptor met 98.3 1.1E-05 3.9E-10 64.6 11.9 145 26-199 25-221 (274)
67 3hem_A Cyclopropane-fatty-acyl 98.3 1E-06 3.6E-11 71.0 5.7 74 121-198 62-144 (302)
68 1o54_A SAM-dependent O-methylt 98.3 9.9E-07 3.4E-11 70.4 5.5 76 121-198 102-188 (277)
69 4dzr_A Protein-(glutamine-N5) 98.3 1.2E-07 4.2E-12 72.0 0.1 66 131-197 29-107 (215)
70 2fca_A TRNA (guanine-N(7)-)-me 98.3 6.5E-07 2.2E-11 68.9 4.2 65 132-197 38-114 (213)
71 2pjd_A Ribosomal RNA small sub 98.2 1.2E-06 4.1E-11 72.3 5.8 76 121-198 186-268 (343)
72 2yqz_A Hypothetical protein TT 98.2 2E-06 6.7E-11 67.5 6.7 66 130-198 37-111 (263)
73 3ccf_A Cyclopropane-fatty-acyl 98.2 8.8E-07 3E-11 70.6 4.7 74 121-198 47-124 (279)
74 3njr_A Precorrin-6Y methylase; 98.2 1.5E-06 5.1E-11 66.4 5.8 72 123-198 47-129 (204)
75 1xtp_A LMAJ004091AAA; SGPP, st 98.2 1E-06 3.6E-11 68.8 4.7 75 121-198 83-165 (254)
76 3ocj_A Putative exported prote 98.2 3.3E-07 1.1E-11 74.1 1.9 68 130-198 116-194 (305)
77 2plw_A Ribosomal RNA methyltra 98.2 3.4E-06 1.2E-10 63.6 7.4 62 122-188 12-75 (201)
78 3gjy_A Spermidine synthase; AP 98.2 7.2E-07 2.5E-11 72.9 3.8 63 134-197 91-165 (317)
79 3g2m_A PCZA361.24; SAM-depende 98.2 1.2E-06 4E-11 70.6 4.9 86 107-197 58-156 (299)
80 4fsd_A Arsenic methyltransfera 98.2 1.6E-06 5.4E-11 72.6 5.9 66 132-198 83-173 (383)
81 2h00_A Methyltransferase 10 do 98.2 9.6E-07 3.3E-11 69.4 4.3 66 132-198 65-147 (254)
82 2fyt_A Protein arginine N-meth 98.2 2.1E-06 7.2E-11 70.8 6.5 74 122-198 55-138 (340)
83 3dxy_A TRNA (guanine-N(7)-)-me 98.2 6E-07 2E-11 69.5 3.0 66 132-198 34-112 (218)
84 3ntv_A MW1564 protein; rossman 98.2 6.9E-07 2.4E-11 69.5 3.3 68 130-198 69-149 (232)
85 3hnr_A Probable methyltransfer 98.2 1.2E-06 4.1E-11 67.1 4.4 73 122-198 36-113 (220)
86 1pjz_A Thiopurine S-methyltran 98.2 1E-06 3.5E-11 67.2 3.9 70 124-197 15-107 (203)
87 1kpg_A CFA synthase;, cyclopro 98.2 2E-06 6.7E-11 68.7 5.8 74 121-198 54-136 (287)
88 2xvm_A Tellurite resistance pr 98.2 2.3E-06 7.9E-11 64.2 5.9 73 122-198 23-104 (199)
89 1dus_A MJ0882; hypothetical pr 98.2 2.7E-06 9.4E-11 63.3 6.2 74 121-198 42-126 (194)
90 3bkx_A SAM-dependent methyltra 98.2 9.8E-07 3.4E-11 69.9 3.6 75 122-198 34-129 (275)
91 3cgg_A SAM-dependent methyltra 98.2 1.7E-06 5.7E-11 64.5 4.6 72 122-198 38-114 (195)
92 2ozv_A Hypothetical protein AT 98.2 2.1E-06 7.1E-11 68.1 5.3 68 130-198 34-122 (260)
93 4htf_A S-adenosylmethionine-de 98.2 1.3E-06 4.6E-11 69.7 4.2 72 122-198 60-143 (285)
94 1fbn_A MJ fibrillarin homologu 98.1 9.4E-06 3.2E-10 62.9 8.8 71 124-196 67-148 (230)
95 3ckk_A TRNA (guanine-N(7)-)-me 98.1 2.6E-06 9E-11 66.6 5.6 66 131-197 45-129 (235)
96 3h2b_A SAM-dependent methyltra 98.1 1.5E-06 5.3E-11 65.7 4.1 63 133-198 42-109 (203)
97 3adn_A Spermidine synthase; am 98.1 1.8E-06 6.3E-11 69.9 4.7 66 131-197 82-163 (294)
98 3l8d_A Methyltransferase; stru 98.1 4.5E-06 1.5E-10 64.6 6.8 65 131-198 52-123 (242)
99 3tma_A Methyltransferase; thum 98.1 2.7E-06 9.2E-11 70.4 5.7 76 120-197 192-278 (354)
100 1i9g_A Hypothetical protein RV 98.1 4.1E-06 1.4E-10 66.6 6.4 94 101-197 66-177 (280)
101 2yxe_A Protein-L-isoaspartate 98.1 3.2E-06 1.1E-10 64.5 5.6 75 122-198 68-153 (215)
102 2pxx_A Uncharacterized protein 98.1 3.1E-06 1.1E-10 64.2 5.3 66 131-198 41-114 (215)
103 2ipx_A RRNA 2'-O-methyltransfe 98.1 2.9E-06 9.8E-11 65.8 5.2 71 126-198 72-154 (233)
104 2p7i_A Hypothetical protein; p 98.1 2E-06 6.7E-11 66.6 4.2 64 132-198 42-110 (250)
105 3grz_A L11 mtase, ribosomal pr 98.1 4E-06 1.4E-10 63.5 5.8 66 131-198 59-132 (205)
106 1wzn_A SAM-dependent methyltra 98.1 4.2E-06 1.5E-10 65.3 6.1 72 122-197 32-111 (252)
107 3q7e_A Protein arginine N-meth 98.1 2.8E-06 9.5E-11 70.3 5.1 65 132-198 66-140 (349)
108 3i9f_A Putative type 11 methyl 98.1 6.9E-07 2.4E-11 65.7 1.3 69 124-198 10-82 (170)
109 3d2l_A SAM-dependent methyltra 98.1 3.3E-06 1.1E-10 65.4 5.3 62 133-198 34-103 (243)
110 2vdv_E TRNA (guanine-N(7)-)-me 98.1 5.2E-06 1.8E-10 65.0 6.4 58 131-189 48-120 (246)
111 3bxo_A N,N-dimethyltransferase 98.1 2.7E-06 9.4E-11 65.7 4.7 63 131-196 39-105 (239)
112 3lbf_A Protein-L-isoaspartate 98.1 5.4E-06 1.9E-10 63.0 6.1 73 122-198 68-150 (210)
113 1xdz_A Methyltransferase GIDB; 98.1 1.7E-06 5.8E-11 67.6 3.3 68 130-198 68-148 (240)
114 3m33_A Uncharacterized protein 98.1 3.3E-06 1.1E-10 65.2 4.8 65 131-198 47-118 (226)
115 3ggd_A SAM-dependent methyltra 98.1 3.5E-06 1.2E-10 65.6 4.9 65 131-198 55-131 (245)
116 3ofk_A Nodulation protein S; N 98.1 3.8E-06 1.3E-10 64.1 4.9 66 130-198 49-121 (216)
117 3tfw_A Putative O-methyltransf 98.1 9.8E-07 3.3E-11 69.5 1.6 68 130-198 61-143 (248)
118 3lpm_A Putative methyltransfer 98.1 3.1E-06 1E-10 66.9 4.4 67 130-198 46-126 (259)
119 3fpf_A Mtnas, putative unchara 98.1 3.6E-06 1.2E-10 68.1 4.8 67 130-198 120-195 (298)
120 1zq9_A Probable dimethyladenos 98.1 4.6E-06 1.6E-10 67.1 5.5 73 121-197 18-99 (285)
121 1ne2_A Hypothetical protein TA 98.0 3.8E-06 1.3E-10 63.5 4.5 65 131-198 50-117 (200)
122 2fk8_A Methoxy mycolic acid sy 98.0 6E-06 2E-10 66.9 5.9 74 121-198 80-162 (318)
123 3cc8_A Putative methyltransfer 98.0 1E-05 3.6E-10 61.8 6.9 76 117-198 19-100 (230)
124 1qam_A ERMC' methyltransferase 98.0 5.4E-06 1.8E-10 65.2 5.4 67 121-191 20-92 (244)
125 3lcc_A Putative methyl chlorid 98.0 3E-06 1E-10 65.6 3.9 70 124-198 60-139 (235)
126 1nt2_A Fibrillarin-like PRE-rR 98.0 8.8E-06 3E-10 62.5 6.4 68 130-198 55-133 (210)
127 3duw_A OMT, O-methyltransferas 98.0 1.1E-06 3.6E-11 67.7 1.2 67 131-198 57-140 (223)
128 2y1w_A Histone-arginine methyl 98.0 6E-06 2E-10 68.2 5.7 74 122-198 41-123 (348)
129 1g8a_A Fibrillarin-like PRE-rR 98.0 1.4E-05 4.7E-10 61.6 7.5 72 125-198 67-150 (227)
130 2esr_A Methyltransferase; stru 98.0 1.5E-06 5E-11 64.4 1.7 66 131-198 30-107 (177)
131 3orh_A Guanidinoacetate N-meth 98.0 1.2E-06 4E-11 68.5 1.1 65 131-197 59-134 (236)
132 3g89_A Ribosomal RNA small sub 98.0 2.7E-06 9.1E-11 67.2 3.1 68 130-198 78-158 (249)
133 3e23_A Uncharacterized protein 98.0 4.4E-06 1.5E-10 63.6 4.2 66 130-198 41-109 (211)
134 2gpy_A O-methyltransferase; st 98.0 3.4E-06 1.2E-10 65.3 3.6 67 131-198 53-133 (233)
135 3mti_A RRNA methylase; SAM-dep 98.0 4.9E-06 1.7E-10 62.0 4.3 66 130-198 20-96 (185)
136 3dou_A Ribosomal RNA large sub 98.0 8.9E-06 3E-10 61.5 5.6 61 121-188 14-74 (191)
137 3eey_A Putative rRNA methylase 98.0 3.9E-06 1.3E-10 63.1 3.5 68 130-198 20-100 (197)
138 1iy9_A Spermidine synthase; ro 98.0 4.7E-06 1.6E-10 66.7 4.1 66 132-198 75-155 (275)
139 2fhp_A Methylase, putative; al 98.0 3E-06 1E-10 62.9 2.7 67 130-198 42-123 (187)
140 3tr6_A O-methyltransferase; ce 98.0 1.7E-06 5.8E-11 66.5 1.3 67 131-198 63-147 (225)
141 3gru_A Dimethyladenosine trans 98.0 1.1E-05 3.8E-10 65.3 6.2 74 121-198 40-121 (295)
142 2yvl_A TRMI protein, hypotheti 98.0 2E-05 6.8E-10 61.2 7.4 73 121-197 81-164 (248)
143 2bm8_A Cephalosporin hydroxyla 98.0 1.1E-05 3.6E-10 63.1 5.9 64 133-197 82-158 (236)
144 3sm3_A SAM-dependent methyltra 98.0 1E-05 3.5E-10 62.1 5.7 65 131-198 29-108 (235)
145 2frn_A Hypothetical protein PH 98.0 5.9E-06 2E-10 66.1 4.4 66 131-198 124-199 (278)
146 1p91_A Ribosomal RNA large sub 98.0 6.6E-06 2.3E-10 65.0 4.7 66 131-197 84-154 (269)
147 1g6q_1 HnRNP arginine N-methyl 98.0 4.8E-06 1.6E-10 68.3 3.9 65 132-198 38-112 (328)
148 3r0q_C Probable protein argini 97.9 8.7E-06 3E-10 68.0 5.4 74 122-198 54-136 (376)
149 1y8c_A S-adenosylmethionine-de 97.9 7.6E-06 2.6E-10 63.3 4.7 64 132-198 37-108 (246)
150 2b25_A Hypothetical protein; s 97.9 1.1E-05 3.7E-10 66.1 5.8 76 121-198 95-194 (336)
151 3ftd_A Dimethyladenosine trans 97.9 1.3E-05 4.3E-10 63.4 6.0 68 121-191 21-92 (249)
152 3fzg_A 16S rRNA methylase; met 97.9 1.9E-06 6.6E-11 65.4 1.2 65 131-198 48-122 (200)
153 3u81_A Catechol O-methyltransf 97.9 2.5E-06 8.5E-11 65.7 1.8 67 131-198 57-141 (221)
154 1o9g_A RRNA methyltransferase; 97.9 6E-06 2.1E-10 64.7 3.9 50 123-174 43-95 (250)
155 1l3i_A Precorrin-6Y methyltran 97.9 4.6E-06 1.6E-10 61.9 3.0 72 123-198 25-107 (192)
156 1ej0_A FTSJ; methyltransferase 97.9 2.4E-05 8.1E-10 57.0 6.7 71 122-197 12-94 (180)
157 1u2z_A Histone-lysine N-methyl 97.9 1.9E-05 6.6E-10 67.1 6.9 76 121-198 232-330 (433)
158 3tm4_A TRNA (guanine N2-)-meth 97.9 6.7E-06 2.3E-10 68.6 4.0 68 130-198 215-293 (373)
159 3a27_A TYW2, uncharacterized p 97.9 7.4E-06 2.5E-10 65.4 4.1 68 130-198 117-193 (272)
160 3p2e_A 16S rRNA methylase; met 97.9 9.7E-06 3.3E-10 62.9 4.6 56 131-187 23-89 (225)
161 2ih2_A Modification methylase 97.9 2.2E-05 7.4E-10 66.0 7.1 72 122-198 30-105 (421)
162 3k0b_A Predicted N6-adenine-sp 97.9 1.4E-05 4.9E-10 67.2 5.9 77 120-198 190-314 (393)
163 2cmg_A Spermidine synthase; tr 97.9 1.6E-05 5.4E-10 63.3 5.9 65 131-198 71-146 (262)
164 1vbf_A 231AA long hypothetical 97.9 1.5E-05 5.2E-10 61.4 5.6 74 121-198 60-141 (231)
165 1dl5_A Protein-L-isoaspartate 97.9 1.3E-05 4.6E-10 65.2 5.4 75 122-198 66-151 (317)
166 2gb4_A Thiopurine S-methyltran 97.9 9.1E-06 3.1E-10 64.2 4.1 64 132-198 68-159 (252)
167 3m70_A Tellurite resistance pr 97.9 9.4E-06 3.2E-10 64.7 4.3 73 122-198 111-191 (286)
168 4hc4_A Protein arginine N-meth 97.9 9.8E-06 3.4E-10 67.8 4.4 62 134-197 85-155 (376)
169 2nxc_A L11 mtase, ribosomal pr 97.9 4.1E-06 1.4E-10 66.2 1.9 65 131-198 119-191 (254)
170 3ldu_A Putative methylase; str 97.9 1.4E-05 4.6E-10 67.1 5.2 77 120-198 184-308 (385)
171 2ex4_A Adrenal gland protein A 97.9 5.8E-06 2E-10 64.3 2.7 65 132-198 79-153 (241)
172 1xj5_A Spermidine synthase 1; 97.9 5.9E-06 2E-10 68.1 2.8 67 131-198 119-201 (334)
173 2h1r_A Dimethyladenosine trans 97.8 6.7E-06 2.3E-10 66.6 3.0 73 121-197 32-112 (299)
174 3evz_A Methyltransferase; NYSG 97.8 1.9E-05 6.5E-10 60.8 5.4 67 130-198 53-130 (230)
175 3uzu_A Ribosomal RNA small sub 97.8 5.5E-06 1.9E-10 66.6 2.4 68 122-191 33-106 (279)
176 3r3h_A O-methyltransferase, SA 97.8 3.1E-06 1.1E-10 66.5 0.8 67 131-198 59-143 (242)
177 2pt6_A Spermidine synthase; tr 97.8 5.3E-06 1.8E-10 67.9 2.3 66 132-198 116-196 (321)
178 2avd_A Catechol-O-methyltransf 97.8 4.1E-06 1.4E-10 64.6 1.5 67 131-198 68-152 (229)
179 1zx0_A Guanidinoacetate N-meth 97.8 4.4E-06 1.5E-10 64.9 1.6 65 131-197 59-134 (236)
180 1m6y_A S-adenosyl-methyltransf 97.8 1.3E-05 4.4E-10 65.1 4.5 65 121-187 16-86 (301)
181 3e8s_A Putative SAM dependent 97.8 6.1E-06 2.1E-10 63.0 2.4 73 122-198 43-123 (227)
182 3bwc_A Spermidine synthase; SA 97.8 5.1E-06 1.8E-10 67.4 2.1 66 131-197 94-175 (304)
183 2hnk_A SAM-dependent O-methylt 97.8 6.6E-06 2.2E-10 64.1 2.5 56 131-187 59-123 (239)
184 2o07_A Spermidine synthase; st 97.8 7.5E-06 2.6E-10 66.5 2.9 67 130-197 93-174 (304)
185 3c3p_A Methyltransferase; NP_9 97.8 4E-06 1.4E-10 63.9 1.2 65 132-197 56-132 (210)
186 3ldg_A Putative uncharacterize 97.8 2.2E-05 7.7E-10 65.8 5.8 77 120-198 183-307 (384)
187 1wy7_A Hypothetical protein PH 97.8 1.9E-05 6.4E-10 59.8 4.8 65 131-198 48-119 (207)
188 3thr_A Glycine N-methyltransfe 97.8 8.9E-06 3E-10 65.0 3.1 73 122-198 48-137 (293)
189 2ift_A Putative methylase HI07 97.8 6.9E-06 2.4E-10 62.4 2.2 64 133-198 54-132 (201)
190 1yub_A Ermam, rRNA methyltrans 97.8 1.9E-05 6.4E-10 61.9 4.6 66 121-190 19-90 (245)
191 1inl_A Spermidine synthase; be 97.8 7.8E-06 2.7E-10 66.1 2.3 65 132-197 90-169 (296)
192 1mjf_A Spermidine synthase; sp 97.8 9.7E-06 3.3E-10 65.0 2.8 65 132-198 75-159 (281)
193 3c3y_A Pfomt, O-methyltransfer 97.8 1.1E-05 3.6E-10 63.1 3.0 67 131-198 69-154 (237)
194 3gdh_A Trimethylguanosine synt 97.8 5.9E-06 2E-10 64.2 1.5 64 132-198 78-151 (241)
195 3p9n_A Possible methyltransfer 97.8 9.6E-06 3.3E-10 60.7 2.6 65 132-198 44-120 (189)
196 2i7c_A Spermidine synthase; tr 97.8 6.1E-06 2.1E-10 66.3 1.6 66 131-197 77-157 (283)
197 2kw5_A SLR1183 protein; struct 97.8 1.9E-05 6.4E-10 59.5 4.2 61 135-198 32-101 (202)
198 1sui_A Caffeoyl-COA O-methyltr 97.8 5.2E-06 1.8E-10 65.4 1.1 67 131-198 78-163 (247)
199 3fut_A Dimethyladenosine trans 97.8 2.4E-05 8.3E-10 62.5 5.0 64 122-190 38-106 (271)
200 1uir_A Polyamine aminopropyltr 97.7 9.6E-06 3.3E-10 66.1 2.3 66 132-198 77-158 (314)
201 1ri5_A MRNA capping enzyme; me 97.7 2.3E-05 7.7E-10 62.5 4.4 66 131-198 63-140 (298)
202 2fpo_A Methylase YHHF; structu 97.7 1.3E-05 4.5E-10 60.9 2.9 64 133-198 55-129 (202)
203 3dr5_A Putative O-methyltransf 97.7 2.1E-05 7.2E-10 60.8 4.0 64 134-198 58-136 (221)
204 3htx_A HEN1; HEN1, small RNA m 97.7 1.9E-05 6.6E-10 71.8 4.3 66 132-198 721-803 (950)
205 1r18_A Protein-L-isoaspartate( 97.7 2.5E-05 8.6E-10 60.2 4.4 68 130-198 82-170 (227)
206 2b2c_A Spermidine synthase; be 97.7 1E-05 3.5E-10 66.1 2.1 66 132-198 108-188 (314)
207 2nyu_A Putative ribosomal RNA 97.7 7.2E-05 2.5E-09 55.9 6.7 70 123-197 13-103 (196)
208 1ws6_A Methyltransferase; stru 97.7 8.6E-06 2.9E-10 59.5 1.2 64 132-198 41-117 (171)
209 3tqs_A Ribosomal RNA small sub 97.7 1.7E-05 5.8E-10 62.9 2.9 66 121-190 19-90 (255)
210 2p8j_A S-adenosylmethionine-de 97.7 2.9E-05 1E-09 58.6 4.1 66 131-198 22-96 (209)
211 2zfu_A Nucleomethylin, cerebra 97.7 6.4E-05 2.2E-09 57.1 5.9 63 122-198 57-122 (215)
212 2gs9_A Hypothetical protein TT 97.7 3.1E-05 1.1E-09 58.7 4.1 61 132-198 36-102 (211)
213 2pbf_A Protein-L-isoaspartate 97.6 4.5E-05 1.5E-09 58.6 4.7 68 130-198 78-169 (227)
214 3frh_A 16S rRNA methylase; met 97.6 4.9E-05 1.7E-09 59.7 4.8 64 130-197 103-174 (253)
215 3cbg_A O-methyltransferase; cy 97.6 1E-05 3.5E-10 62.9 0.9 66 132-198 72-155 (232)
216 2avn_A Ubiquinone/menaquinone 97.6 5E-05 1.7E-09 59.7 4.8 64 132-198 54-121 (260)
217 1uwv_A 23S rRNA (uracil-5-)-me 97.6 4.2E-05 1.4E-09 65.0 4.6 72 123-198 278-363 (433)
218 3iv6_A Putative Zn-dependent a 97.6 3.8E-05 1.3E-09 61.1 3.5 50 121-174 35-85 (261)
219 4gqb_A Protein arginine N-meth 97.6 5.5E-05 1.9E-09 67.1 4.7 95 95-197 324-434 (637)
220 3lcv_B Sisomicin-gentamicin re 97.6 1.7E-05 5.8E-10 63.0 1.2 65 132-197 132-204 (281)
221 1qyr_A KSGA, high level kasuga 97.6 5.5E-05 1.9E-09 59.8 4.2 66 121-190 11-82 (252)
222 3k6r_A Putative transferase PH 97.5 5.1E-05 1.7E-09 60.9 3.7 66 131-198 124-199 (278)
223 2oxt_A Nucleoside-2'-O-methylt 97.5 0.00018 6.1E-09 57.2 6.8 64 130-198 72-147 (265)
224 3bgv_A MRNA CAP guanine-N7 met 97.5 0.00014 4.8E-09 58.7 6.2 66 131-198 33-121 (313)
225 1i1n_A Protein-L-isoaspartate 97.5 0.0001 3.6E-09 56.4 5.0 68 130-198 75-158 (226)
226 2wa2_A Non-structural protein 97.5 0.00015 5.1E-09 58.1 5.9 64 130-198 80-155 (276)
227 1ixk_A Methyltransferase; open 97.5 0.0001 3.5E-09 60.0 4.7 92 104-197 91-193 (315)
228 2p41_A Type II methyltransfera 97.4 0.00019 6.5E-09 58.2 5.9 64 130-197 80-154 (305)
229 3o4f_A Spermidine synthase; am 97.4 0.00014 4.9E-09 58.6 5.1 66 131-197 82-163 (294)
230 3dmg_A Probable ribosomal RNA 97.4 0.00011 3.7E-09 61.6 4.5 64 132-198 233-305 (381)
231 2r6z_A UPF0341 protein in RSP 97.4 5.8E-05 2E-09 59.8 2.5 66 130-198 81-168 (258)
232 1vlm_A SAM-dependent methyltra 97.4 0.00013 4.3E-09 55.8 4.0 58 133-198 48-109 (219)
233 3id6_C Fibrillarin-like rRNA/T 97.4 0.00048 1.6E-08 53.7 7.1 67 130-197 74-152 (232)
234 2yx1_A Hypothetical protein MJ 97.3 0.00013 4.6E-09 59.8 3.5 64 131-198 194-265 (336)
235 2qfm_A Spermine synthase; sper 97.3 7.9E-05 2.7E-09 61.8 2.0 65 131-197 187-273 (364)
236 3bzb_A Uncharacterized protein 97.3 0.00029 9.8E-09 56.3 5.0 65 131-197 78-169 (281)
237 2i62_A Nicotinamide N-methyltr 97.3 5.6E-05 1.9E-09 59.1 0.8 41 131-173 55-96 (265)
238 3ajd_A Putative methyltransfer 97.3 0.0001 3.6E-09 58.6 2.4 70 126-197 78-162 (274)
239 2f8l_A Hypothetical protein LM 97.3 0.00015 5.1E-09 59.6 3.3 66 132-198 130-208 (344)
240 3giw_A Protein of unknown func 97.2 0.00022 7.6E-09 57.0 4.0 56 131-187 77-142 (277)
241 2igt_A SAM dependent methyltra 97.2 7.2E-05 2.5E-09 61.5 1.1 63 132-197 153-231 (332)
242 2jjq_A Uncharacterized RNA met 97.2 0.00036 1.2E-08 59.2 5.2 64 131-198 289-360 (425)
243 3v97_A Ribosomal RNA large sub 97.2 0.00037 1.3E-08 62.8 5.2 77 120-198 179-310 (703)
244 2yxl_A PH0851 protein, 450AA l 97.1 0.00047 1.6E-08 58.8 5.2 90 106-197 234-336 (450)
245 3sso_A Methyltransferase; macr 97.1 0.00038 1.3E-08 58.6 4.3 63 132-197 216-294 (419)
246 4df3_A Fibrillarin-like rRNA/T 97.1 0.0015 5.2E-08 50.9 7.4 70 126-197 72-153 (233)
247 2b78_A Hypothetical protein SM 97.0 0.00014 4.8E-09 60.8 0.9 65 131-197 211-291 (385)
248 4azs_A Methyltransferase WBDD; 96.9 0.00027 9.3E-09 62.1 2.0 63 132-197 66-140 (569)
249 3ll7_A Putative methyltransfer 96.9 0.00031 1.1E-08 59.3 1.9 63 133-198 94-170 (410)
250 2vdw_A Vaccinia virus capping 96.8 0.00082 2.8E-08 54.3 3.7 51 133-185 49-112 (302)
251 2as0_A Hypothetical protein PH 96.8 0.00025 8.5E-09 59.4 0.6 64 132-197 217-295 (396)
252 2oyr_A UPF0341 protein YHIQ; a 96.8 0.00085 2.9E-08 53.1 3.6 74 121-198 76-171 (258)
253 1wxx_A TT1595, hypothetical pr 96.8 0.00022 7.7E-09 59.5 0.1 63 132-197 209-285 (382)
254 2a14_A Indolethylamine N-methy 96.7 0.00015 5.2E-09 57.2 -1.0 41 131-173 54-95 (263)
255 3bt7_A TRNA (uracil-5-)-methyl 96.7 0.0006 2.1E-08 56.6 2.4 51 134-187 215-272 (369)
256 2okc_A Type I restriction enzy 96.7 0.0011 3.8E-08 56.4 4.0 75 122-198 162-260 (445)
257 3opn_A Putative hemolysin; str 96.7 0.0025 8.7E-08 49.4 5.5 50 122-173 27-77 (232)
258 4e2x_A TCAB9; kijanose, tetron 96.7 0.00094 3.2E-08 56.0 3.2 52 120-175 96-148 (416)
259 3c0k_A UPF0064 protein YCCW; P 96.6 0.00036 1.2E-08 58.5 0.4 66 131-198 219-300 (396)
260 1sqg_A SUN protein, FMU protei 96.6 0.0011 3.6E-08 56.2 3.2 71 125-197 240-321 (429)
261 1wg8_A Predicted S-adenosylmet 96.6 0.002 6.7E-08 51.6 4.5 64 120-187 11-77 (285)
262 2k4m_A TR8_protein, UPF0146 pr 96.6 0.002 7E-08 46.5 4.1 54 132-196 35-94 (153)
263 2g72_A Phenylethanolamine N-me 96.6 0.0005 1.7E-08 54.7 0.9 40 132-173 71-111 (289)
264 3ua3_A Protein arginine N-meth 96.6 0.0012 4E-08 59.2 3.2 95 94-196 378-500 (745)
265 2aot_A HMT, histamine N-methyl 96.5 0.0025 8.6E-08 50.8 4.6 41 132-173 52-99 (292)
266 4auk_A Ribosomal RNA large sub 96.3 0.0037 1.3E-07 51.9 4.8 64 130-196 209-275 (375)
267 3m6w_A RRNA methylase; rRNA me 96.3 0.0014 4.8E-08 56.2 1.9 72 123-197 93-176 (464)
268 3v97_A Ribosomal RNA large sub 96.3 0.001 3.5E-08 59.9 1.1 64 132-197 539-615 (703)
269 2frx_A Hypothetical protein YE 96.1 0.0055 1.9E-07 52.7 5.1 65 132-197 117-193 (479)
270 2b9e_A NOL1/NOP2/SUN domain fa 96.1 0.0048 1.6E-07 50.0 4.4 67 130-197 100-180 (309)
271 3hp7_A Hemolysin, putative; st 96.0 0.0092 3.1E-07 48.0 5.5 58 121-181 74-134 (291)
272 3m4x_A NOL1/NOP2/SUN family pr 95.9 0.0021 7.3E-08 54.9 1.4 90 106-197 80-181 (456)
273 4dmg_A Putative uncharacterize 95.9 0.0028 9.6E-08 53.1 2.1 62 133-197 215-286 (393)
274 2xyq_A Putative 2'-O-methyl tr 95.8 0.011 3.7E-07 47.6 5.1 59 130-197 61-129 (290)
275 3axs_A Probable N(2),N(2)-dime 95.6 0.0023 8E-08 53.6 0.3 67 132-198 52-132 (392)
276 3c6k_A Spermine synthase; sper 95.5 0.0088 3E-07 49.8 3.4 54 132-187 205-273 (381)
277 2px2_A Genome polyprotein [con 95.5 0.01 3.5E-07 46.8 3.5 76 120-197 62-145 (269)
278 3tka_A Ribosomal RNA small sub 95.4 0.031 1E-06 45.8 6.4 66 120-187 46-115 (347)
279 3p8z_A Mtase, non-structural p 95.1 0.047 1.6E-06 42.6 6.0 75 120-197 67-150 (267)
280 2ar0_A M.ecoki, type I restric 94.5 0.025 8.7E-07 49.3 3.8 76 121-198 159-268 (541)
281 2dul_A N(2),N(2)-dimethylguano 94.4 0.015 5.2E-07 48.4 2.0 64 133-197 48-137 (378)
282 1i4w_A Mitochondrial replicati 94.1 0.1 3.6E-06 42.9 6.4 54 133-187 59-116 (353)
283 3b5i_A S-adenosyl-L-methionine 94.1 0.13 4.4E-06 42.8 6.9 65 133-198 53-157 (374)
284 3s1s_A Restriction endonucleas 94.1 0.058 2E-06 49.2 5.1 68 130-198 319-406 (878)
285 3gcz_A Polyprotein; flavivirus 93.7 0.049 1.7E-06 43.4 3.6 44 120-165 79-122 (282)
286 1rjd_A PPM1P, carboxy methyl t 93.4 0.037 1.3E-06 45.3 2.6 55 132-187 97-178 (334)
287 3lkd_A Type I restriction-modi 93.4 0.039 1.4E-06 48.1 2.9 66 132-198 221-304 (542)
288 3khk_A Type I restriction-modi 93.4 0.028 9.5E-07 49.1 1.8 75 121-198 235-336 (544)
289 3evf_A RNA-directed RNA polyme 92.1 0.11 3.9E-06 41.2 3.6 36 122-158 65-100 (277)
290 1xn7_A Hypothetical protein YH 91.9 0.034 1.2E-06 35.5 0.3 37 11-51 7-44 (78)
291 2k02_A Ferrous iron transport 91.9 0.032 1.1E-06 36.5 0.1 37 11-51 7-44 (87)
292 3pqk_A Biofilm growth-associat 91.5 0.11 3.8E-06 34.3 2.6 40 8-51 25-64 (102)
293 3lkz_A Non-structural protein 91.4 0.32 1.1E-05 39.1 5.5 74 121-197 84-166 (321)
294 3jth_A Transcription activator 91.0 0.075 2.6E-06 34.9 1.3 40 8-51 25-64 (98)
295 1y0u_A Arsenical resistance op 91.0 0.071 2.4E-06 35.0 1.1 39 8-51 33-71 (96)
296 2kko_A Possible transcriptiona 90.5 0.067 2.3E-06 36.1 0.7 40 8-51 27-66 (108)
297 1zkd_A DUF185; NESG, RPR58, st 90.1 0.78 2.7E-05 38.2 6.9 64 101-170 54-124 (387)
298 2efj_A 3,7-dimethylxanthine me 89.8 0.18 6.1E-06 42.0 2.8 64 133-197 53-155 (384)
299 2heo_A Z-DNA binding protein 1 89.8 0.06 2.1E-06 33.2 -0.0 40 8-51 12-53 (67)
300 2zig_A TTHA0409, putative modi 89.6 0.18 6.2E-06 40.2 2.6 40 132-174 235-275 (297)
301 2htj_A P fimbrial regulatory p 89.5 0.076 2.6E-06 33.8 0.3 37 11-51 5-42 (81)
302 1r1t_A Transcriptional repress 89.5 0.16 5.4E-06 35.1 1.9 40 8-51 48-87 (122)
303 3eld_A Methyltransferase; flav 89.3 0.32 1.1E-05 39.0 3.8 42 122-165 72-113 (300)
304 1oyi_A Double-stranded RNA-bin 89.2 0.092 3.2E-06 33.9 0.5 42 6-51 17-58 (82)
305 1r1u_A CZRA, repressor protein 89.2 0.092 3.2E-06 35.1 0.5 40 8-51 28-67 (106)
306 3cuo_A Uncharacterized HTH-typ 89.1 0.12 4.2E-06 33.6 1.1 40 8-51 26-66 (99)
307 2fu4_A Ferric uptake regulatio 88.8 0.16 5.6E-06 32.2 1.5 41 7-51 18-66 (83)
308 2oqg_A Possible transcriptiona 88.7 0.1 3.5E-06 35.1 0.5 40 8-51 23-62 (114)
309 2qy6_A UPF0209 protein YFCK; s 88.6 0.088 3E-06 41.4 0.1 33 132-165 60-104 (257)
310 3f6o_A Probable transcriptiona 87.6 0.1 3.6E-06 35.6 -0.0 40 8-51 20-59 (118)
311 2uyo_A Hypothetical protein ML 86.3 0.32 1.1E-05 39.2 2.2 54 131-187 101-164 (310)
312 2wk1_A NOVP; transferase, O-me 86.2 0.3 1E-05 38.9 2.0 65 132-197 106-215 (282)
313 1u2w_A CADC repressor, cadmium 86.1 0.17 5.7E-06 34.9 0.4 40 8-51 44-84 (122)
314 2jt1_A PEFI protein; solution 86.1 0.35 1.2E-05 30.7 1.8 30 18-51 23-52 (77)
315 2jsc_A Transcriptional regulat 85.8 0.13 4.5E-06 35.2 -0.3 40 8-51 23-62 (118)
316 2y75_A HTH-type transcriptiona 85.7 0.53 1.8E-05 32.4 2.8 31 17-51 24-54 (129)
317 1jhg_A Trp operon repressor; c 85.7 0.2 6.9E-06 33.6 0.6 39 6-48 45-83 (101)
318 2hzt_A Putative HTH-type trans 85.4 0.46 1.6E-05 31.7 2.3 37 11-51 19-56 (107)
319 3r4k_A Transcriptional regulat 85.1 0.24 8.1E-06 38.8 0.8 39 9-51 9-49 (260)
320 3mq0_A Transcriptional repress 85.0 0.24 8.1E-06 39.2 0.8 38 10-51 34-73 (275)
321 1sfx_A Conserved hypothetical 83.8 0.26 9.1E-06 32.3 0.5 40 8-51 22-62 (109)
322 1qbj_A Protein (double-strande 83.8 0.21 7E-06 32.1 -0.1 40 8-51 12-55 (81)
323 3f6v_A Possible transcriptiona 83.7 0.24 8.1E-06 35.6 0.2 40 8-51 60-99 (151)
324 1qgp_A Protein (double strande 83.5 0.15 5.1E-06 32.3 -0.8 38 10-51 18-59 (77)
325 2lkp_A Transcriptional regulat 83.2 0.22 7.7E-06 33.8 -0.1 40 8-51 34-73 (119)
326 2dbb_A Putative HTH-type trans 82.7 0.39 1.3E-05 34.1 1.0 43 5-51 8-51 (151)
327 1uly_A Hypothetical protein PH 82.6 0.57 1.9E-05 35.0 1.9 40 8-51 22-61 (192)
328 2pn6_A ST1022, 150AA long hypo 82.6 0.58 2E-05 33.0 1.9 41 7-51 4-45 (150)
329 3lwf_A LIN1550 protein, putati 82.2 0.87 3E-05 33.0 2.8 31 17-51 42-72 (159)
330 2o0y_A Transcriptional regulat 82.2 0.62 2.1E-05 36.3 2.2 39 9-51 26-66 (260)
331 2gxg_A 146AA long hypothetical 81.6 0.67 2.3E-05 32.1 2.0 40 8-51 39-78 (146)
332 1p6r_A Penicillinase repressor 81.6 0.31 1.1E-05 30.7 0.2 47 3-51 6-55 (82)
333 1xmk_A Double-stranded RNA-spe 81.3 0.39 1.3E-05 30.7 0.5 38 11-51 16-54 (79)
334 1sfu_A 34L protein; protein/Z- 81.2 1.4 4.7E-05 27.7 3.0 38 10-51 19-57 (75)
335 2py6_A Methyltransferase FKBM; 81.1 1.7 5.8E-05 36.2 4.6 40 131-171 225-267 (409)
336 3tgn_A ADC operon repressor AD 81.0 0.73 2.5E-05 31.9 2.0 41 7-51 39-79 (146)
337 2w25_A Probable transcriptiona 81.0 0.6 2.1E-05 33.0 1.5 42 6-51 7-49 (150)
338 2g7u_A Transcriptional regulat 80.9 0.69 2.4E-05 36.0 2.0 39 9-51 17-57 (257)
339 2d1h_A ST1889, 109AA long hypo 80.9 0.73 2.5E-05 30.1 1.9 31 17-51 34-64 (109)
340 3i4p_A Transcriptional regulat 80.4 0.78 2.7E-05 33.0 2.0 41 7-51 4-45 (162)
341 3df8_A Possible HXLR family tr 80.2 0.75 2.6E-05 31.0 1.7 37 11-51 32-71 (111)
342 1ku9_A Hypothetical protein MJ 79.7 0.79 2.7E-05 31.7 1.8 32 16-51 38-69 (152)
343 2cfx_A HTH-type transcriptiona 79.6 0.64 2.2E-05 32.7 1.3 41 7-51 6-47 (144)
344 1ub9_A Hypothetical protein PH 79.5 0.27 9.1E-06 31.9 -0.7 40 8-51 18-58 (100)
345 3b73_A PHIH1 repressor-like pr 79.5 0.41 1.4E-05 32.6 0.2 41 7-51 14-57 (111)
346 3t8r_A Staphylococcus aureus C 79.5 0.87 3E-05 32.2 2.0 30 18-51 27-56 (143)
347 3k69_A Putative transcription 79.1 1.4 4.7E-05 31.9 2.9 31 17-51 26-56 (162)
348 2fsw_A PG_0823 protein; alpha- 78.9 0.78 2.7E-05 30.5 1.5 37 11-51 30-67 (107)
349 2ia2_A Putative transcriptiona 78.9 0.55 1.9E-05 36.7 0.8 39 9-51 24-64 (265)
350 1ylf_A RRF2 family protein; st 78.9 0.9 3.1E-05 32.3 1.9 31 17-51 28-58 (149)
351 2p5v_A Transcriptional regulat 78.6 0.88 3E-05 32.6 1.8 41 7-51 11-52 (162)
352 1m6e_X S-adenosyl-L-methionnin 78.5 0.25 8.6E-06 40.8 -1.3 66 131-197 50-145 (359)
353 3cdh_A Transcriptional regulat 78.5 0.94 3.2E-05 31.8 1.9 40 8-51 45-85 (155)
354 1z7u_A Hypothetical protein EF 78.2 0.5 1.7E-05 31.8 0.3 37 11-51 27-64 (112)
355 4a5n_A Uncharacterized HTH-typ 77.6 1.2 4.2E-05 31.1 2.3 37 11-51 31-68 (131)
356 3r0a_A Putative transcriptiona 77.6 1.1 3.6E-05 30.8 1.9 40 8-51 28-70 (123)
357 2ld4_A Anamorsin; methyltransf 77.3 0.85 2.9E-05 32.7 1.4 52 130-198 10-70 (176)
358 1tbx_A ORF F-93, hypothetical 76.7 0.89 3.1E-05 29.5 1.2 40 8-51 10-54 (99)
359 2xrn_A HTH-type transcriptiona 76.7 0.62 2.1E-05 35.9 0.5 38 10-51 10-49 (241)
360 2nnn_A Probable transcriptiona 76.6 0.64 2.2E-05 31.9 0.5 40 8-51 40-80 (140)
361 2f2e_A PA1607; transcription f 76.5 1 3.5E-05 31.9 1.6 35 13-51 31-65 (146)
362 3ech_A MEXR, multidrug resista 76.3 2.5 8.6E-05 29.0 3.6 40 8-51 39-79 (142)
363 2ia0_A Putative HTH-type trans 76.2 0.9 3.1E-05 33.1 1.2 41 7-51 18-59 (171)
364 1mkm_A ICLR transcriptional re 75.6 0.73 2.5E-05 35.6 0.6 39 9-51 11-51 (249)
365 2cyy_A Putative HTH-type trans 75.5 0.76 2.6E-05 32.5 0.7 41 7-51 8-49 (151)
366 2fbh_A Transcriptional regulat 75.3 1.2 4.1E-05 30.7 1.7 40 8-51 39-80 (146)
367 3cvo_A Methyltransferase-like 75.2 4.3 0.00015 30.5 4.8 52 131-186 29-90 (202)
368 2e1c_A Putative HTH-type trans 75.1 1 3.4E-05 32.9 1.2 41 7-51 28-69 (171)
369 3hsr_A HTH-type transcriptiona 75.1 0.85 2.9E-05 31.5 0.8 39 9-51 39-78 (140)
370 3kp7_A Transcriptional regulat 74.8 3.1 0.00011 28.8 3.8 39 9-51 41-79 (151)
371 1xd7_A YWNA; structural genomi 74.7 1.5 5.2E-05 30.9 2.1 29 18-51 23-51 (145)
372 2cg4_A Regulatory protein ASNC 74.6 0.83 2.8E-05 32.3 0.7 41 7-51 9-50 (152)
373 3boq_A Transcriptional regulat 74.2 1.4 4.8E-05 30.9 1.9 40 8-51 49-90 (160)
374 3nrv_A Putative transcriptiona 73.7 0.8 2.7E-05 31.8 0.4 39 9-51 43-82 (148)
375 1q1h_A TFE, transcription fact 73.4 0.66 2.3E-05 30.9 -0.1 40 8-51 20-61 (110)
376 3bdd_A Regulatory protein MARR 73.3 0.85 2.9E-05 31.3 0.5 40 8-51 33-73 (142)
377 3jw4_A Transcriptional regulat 73.3 2.6 8.9E-05 29.2 3.1 30 18-51 56-85 (148)
378 2vxz_A Pyrsv_GP04; viral prote 72.6 1.4 4.9E-05 31.5 1.5 37 11-51 16-52 (165)
379 1g60_A Adenine-specific methyl 72.4 2.2 7.7E-05 33.0 2.8 39 132-173 212-251 (260)
380 1yyv_A Putative transcriptiona 72.3 0.98 3.4E-05 31.4 0.6 37 11-51 40-77 (131)
381 3bja_A Transcriptional regulat 71.9 3.1 0.00011 28.2 3.2 39 9-51 36-75 (139)
382 2obp_A Putative DNA-binding pr 71.7 2.8 9.7E-05 27.6 2.7 31 17-51 34-64 (96)
383 2pjp_A Selenocysteine-specific 71.3 2.3 7.8E-05 29.0 2.3 40 8-51 9-48 (121)
384 3k0l_A Repressor protein; heli 71.1 3.6 0.00012 29.0 3.4 39 9-51 49-88 (162)
385 1on2_A Transcriptional regulat 70.7 2.5 8.7E-05 29.2 2.5 31 17-51 20-50 (142)
386 2rdp_A Putative transcriptiona 70.6 1.1 3.6E-05 31.2 0.5 39 9-51 45-84 (150)
387 2x4h_A Hypothetical protein SS 70.1 2.8 9.7E-05 28.7 2.6 31 17-51 29-59 (139)
388 2eth_A Transcriptional regulat 69.9 1.2 4E-05 31.3 0.6 39 9-51 47-86 (154)
389 4f3n_A Uncharacterized ACR, CO 69.6 4.6 0.00016 34.0 4.2 57 100-165 113-174 (432)
390 2fa5_A Transcriptional regulat 69.1 1.2 4.2E-05 31.3 0.5 39 9-51 52-91 (162)
391 2pg4_A Uncharacterized protein 69.1 2.1 7.1E-05 27.5 1.6 31 17-51 27-59 (95)
392 2fbi_A Probable transcriptiona 68.6 0.92 3.1E-05 31.1 -0.3 40 8-51 38-78 (142)
393 2gmg_A Hypothetical protein PF 68.2 1.9 6.5E-05 28.9 1.3 25 7-31 12-36 (105)
394 2hr3_A Probable transcriptiona 68.2 3.4 0.00012 28.3 2.7 38 10-51 39-78 (147)
395 3bpv_A Transcriptional regulat 68.0 3 0.0001 28.3 2.3 38 10-51 33-71 (138)
396 3eco_A MEPR; mutlidrug efflux 67.9 2.4 8.3E-05 28.9 1.9 38 10-51 35-75 (139)
397 2qvo_A Uncharacterized protein 67.8 2.4 8.4E-05 27.3 1.8 28 20-51 31-58 (95)
398 3g3z_A NMB1585, transcriptiona 67.7 3.2 0.00011 28.5 2.5 39 9-51 34-73 (145)
399 2p4w_A Transcriptional regulat 67.1 0.99 3.4E-05 34.0 -0.4 40 8-51 17-56 (202)
400 4fx0_A Probable transcriptiona 67.1 3 0.0001 29.3 2.2 30 18-51 51-80 (148)
401 3oop_A LIN2960 protein; protei 67.1 2.3 8E-05 29.2 1.6 39 9-51 40-79 (143)
402 3lsg_A Two-component response 67.1 3.5 0.00012 26.8 2.5 34 13-50 13-46 (103)
403 2nyx_A Probable transcriptiona 66.9 0.98 3.3E-05 32.4 -0.4 40 8-51 47-87 (168)
404 2a61_A Transcriptional regulat 66.6 3.6 0.00012 28.1 2.6 39 9-51 36-75 (145)
405 1i1g_A Transcriptional regulat 65.9 3.1 0.00011 28.7 2.1 40 8-51 6-46 (141)
406 2k4b_A Transcriptional regulat 65.5 1.2 4E-05 29.6 -0.2 44 6-51 35-81 (99)
407 1r7j_A Conserved hypothetical 65.4 3.5 0.00012 26.9 2.1 34 13-51 15-48 (95)
408 3u2r_A Regulatory protein MARR 65.2 4.5 0.00015 28.7 2.9 38 10-51 50-90 (168)
409 3cjn_A Transcriptional regulat 65.2 1.1 3.9E-05 31.6 -0.4 39 9-51 55-94 (162)
410 3vrd_B FCCB subunit, flavocyto 65.1 4.8 0.00016 32.7 3.4 31 134-165 3-35 (401)
411 2bv6_A MGRA, HTH-type transcri 64.5 4.4 0.00015 27.6 2.7 38 10-51 41-79 (142)
412 2zkz_A Transcriptional repress 64.1 1 3.4E-05 29.6 -0.8 28 17-48 39-66 (99)
413 2g9w_A Conserved hypothetical 63.9 1.6 5.6E-05 30.3 0.3 44 4-51 7-56 (138)
414 1jgs_A Multiple antibiotic res 63.6 4.3 0.00015 27.5 2.5 39 9-51 37-76 (138)
415 3iht_A S-adenosyl-L-methionine 62.9 9.1 0.00031 27.7 4.0 31 134-165 42-72 (174)
416 1okr_A MECI, methicillin resis 62.7 0.95 3.3E-05 30.5 -1.1 42 6-51 10-56 (123)
417 2fe3_A Peroxide operon regulat 61.8 4.3 0.00015 28.5 2.2 41 7-51 23-70 (145)
418 2k9s_A Arabinose operon regula 61.6 5.1 0.00017 26.2 2.5 31 15-49 16-46 (107)
419 3bro_A Transcriptional regulat 61.5 4.6 0.00016 27.4 2.3 37 11-51 39-78 (141)
420 2oo3_A Protein involved in cat 61.3 3.1 0.00011 33.0 1.5 62 133-197 92-165 (283)
421 3s2w_A Transcriptional regulat 61.3 3.5 0.00012 28.9 1.7 39 9-51 53-92 (159)
422 2frh_A SARA, staphylococcal ac 61.3 2.4 8.2E-05 28.9 0.8 30 18-51 52-81 (127)
423 3frw_A Putative Trp repressor 60.8 2.6 8.8E-05 28.4 0.8 47 6-58 46-92 (107)
424 2qww_A Transcriptional regulat 60.6 3.7 0.00013 28.5 1.7 38 10-51 45-83 (154)
425 2o03_A Probable zinc uptake re 60.5 1.8 6.3E-05 29.9 0.0 40 8-51 13-59 (131)
426 1tc3_C Protein (TC3 transposas 60.4 3.9 0.00013 22.0 1.5 26 19-48 21-46 (51)
427 2wte_A CSA3; antiviral protein 60.4 5 0.00017 31.0 2.5 39 9-51 155-194 (244)
428 4g6q_A Putative uncharacterize 60.1 2.3 8E-05 31.2 0.6 41 7-51 24-65 (182)
429 3bj6_A Transcriptional regulat 60.1 3.8 0.00013 28.3 1.7 39 9-51 43-82 (152)
430 3f3x_A Transcriptional regulat 59.7 1.6 5.6E-05 30.1 -0.4 39 8-51 39-78 (144)
431 2vvp_A Ribose-5-phosphate isom 59.7 5.4 0.00019 28.9 2.4 47 139-186 67-115 (162)
432 2vn2_A DNAD, chromosome replic 59.7 5 0.00017 27.5 2.2 29 19-51 51-79 (128)
433 3fm5_A Transcriptional regulat 59.4 4.4 0.00015 28.0 1.9 39 9-51 42-82 (150)
434 3k2z_A LEXA repressor; winged 59.2 5.3 0.00018 29.4 2.4 30 18-51 23-52 (196)
435 4b8x_A SCO5413, possible MARR- 59.1 2.9 9.9E-05 29.2 0.9 31 17-51 49-79 (147)
436 3nqo_A MARR-family transcripti 58.3 4.6 0.00016 29.5 1.9 40 8-51 43-85 (189)
437 3he8_A Ribose-5-phosphate isom 58.1 6.1 0.00021 28.2 2.4 46 139-185 63-110 (149)
438 1lj9_A Transcriptional regulat 57.9 4.4 0.00015 27.6 1.7 39 9-51 32-71 (144)
439 2pex_A Transcriptional regulat 57.5 4.5 0.00015 28.0 1.7 39 9-51 50-89 (153)
440 1o1x_A Ribose-5-phosphate isom 57.0 5.6 0.00019 28.6 2.1 47 139-186 75-123 (155)
441 3s5p_A Ribose 5-phosphate isom 56.8 6.9 0.00023 28.4 2.6 46 139-185 84-131 (166)
442 4hbl_A Transcriptional regulat 56.7 3.6 0.00012 28.5 1.1 39 9-51 44-83 (149)
443 2lnb_A Z-DNA-binding protein 1 56.7 3.6 0.00012 26.0 0.9 38 10-51 23-62 (80)
444 3e6m_A MARR family transcripti 56.7 4 0.00014 28.7 1.3 39 9-51 56-95 (161)
445 2w48_A Sorbitol operon regulat 56.5 6.9 0.00023 31.2 2.8 31 17-51 19-49 (315)
446 2qlz_A Transcription factor PF 56.5 1.1 3.9E-05 34.5 -1.8 40 8-51 14-53 (232)
447 3deu_A Transcriptional regulat 56.4 4.9 0.00017 28.6 1.7 40 8-51 55-96 (166)
448 1uxc_A FRUR (1-57), fructose r 56.3 5.2 0.00018 24.1 1.6 22 20-45 1-22 (65)
449 1v4r_A Transcriptional repress 56.0 7.6 0.00026 25.2 2.5 27 21-51 37-63 (102)
450 1jko_C HIN recombinase, DNA-in 55.4 1.9 6.6E-05 23.7 -0.5 26 15-45 18-43 (52)
451 1mzb_A Ferric uptake regulatio 55.1 3.8 0.00013 28.4 0.9 41 7-51 19-67 (136)
452 2q7x_A UPF0052 protein SP_1565 54.8 6.9 0.00024 31.7 2.6 25 134-158 5-31 (326)
453 1s3j_A YUSO protein; structura 54.8 4.2 0.00014 28.2 1.1 38 10-51 41-79 (155)
454 3u5c_Z RP45, S31, YS23, 40S ri 54.3 12 0.00041 25.1 3.2 30 18-51 58-87 (108)
455 3ph3_A Ribose-5-phosphate isom 54.2 6.6 0.00023 28.6 2.1 46 139-185 83-130 (169)
456 2vvr_A Ribose-5-phosphate isom 53.5 8.4 0.00029 27.5 2.5 47 139-186 64-112 (149)
457 3hyw_A Sulfide-quinone reducta 52.8 10 0.00035 31.3 3.4 31 134-165 3-35 (430)
458 2ppw_A Conserved domain protei 52.7 5.2 0.00018 30.4 1.4 44 139-183 73-118 (216)
459 3ono_A Ribose/galactose isomer 52.6 6 0.00021 30.0 1.7 44 139-183 72-117 (214)
460 2p0y_A Hypothetical protein LP 52.1 6.7 0.00023 31.9 2.1 31 133-164 10-44 (341)
461 3mwm_A ZUR, putative metal upt 51.9 5.7 0.00019 27.7 1.4 41 7-51 15-62 (139)
462 2h09_A Transcriptional regulat 51.8 9 0.00031 26.7 2.5 30 18-51 53-82 (155)
463 3kor_A Possible Trp repressor; 51.7 3.2 0.00011 28.5 0.1 47 8-60 65-111 (119)
464 3k7p_A Ribose 5-phosphate isom 51.3 9 0.00031 28.2 2.4 47 139-186 87-135 (179)
465 3iei_A Leucine carboxyl methyl 51.1 17 0.0006 29.3 4.4 55 132-187 90-174 (334)
466 3c5y_A Ribose/galactose isomer 50.9 6.6 0.00023 30.1 1.7 44 139-183 89-134 (231)
467 3iwf_A Transcription regulator 50.6 7.8 0.00027 25.8 1.9 26 18-47 34-59 (107)
468 2w57_A Ferric uptake regulatio 50.5 5.8 0.0002 28.0 1.3 41 7-51 18-66 (150)
469 3ufb_A Type I restriction-modi 50.4 12 0.00042 32.2 3.6 76 121-198 207-309 (530)
470 3b7h_A Prophage LP1 protein 11 50.0 2.7 9.1E-05 25.5 -0.5 28 14-45 15-42 (78)
471 2o3f_A Putative HTH-type trans 49.9 7.5 0.00026 26.0 1.7 32 19-57 39-70 (111)
472 1z6r_A MLC protein; transcript 49.2 5.3 0.00018 32.9 1.1 37 11-51 21-58 (406)
473 4aik_A Transcriptional regulat 48.9 12 0.00039 26.2 2.7 37 11-51 36-74 (151)
474 1z91_A Organic hydroperoxide r 48.5 4.6 0.00016 27.7 0.5 39 9-51 43-82 (147)
475 3sgw_A Ribose 5-phosphate isom 48.4 11 0.00036 27.9 2.4 46 139-185 95-142 (184)
476 3mn2_A Probable ARAC family tr 48.3 11 0.00038 24.5 2.4 28 18-49 17-44 (108)
477 2xig_A Ferric uptake regulatio 47.6 4.7 0.00016 28.5 0.5 39 9-51 30-75 (150)
478 3hrs_A Metalloregulator SCAR; 47.4 12 0.00041 28.0 2.7 31 17-51 18-48 (214)
479 3oio_A Transcriptional regulat 47.2 9.5 0.00032 25.1 1.9 29 18-50 22-50 (113)
480 1u6z_A Exopolyphosphatase; alp 47.0 11 0.00038 32.4 2.7 23 122-145 128-150 (513)
481 3fwz_A Inner membrane protein 47.0 30 0.001 23.5 4.6 61 134-197 8-77 (140)
482 2v79_A DNA replication protein 46.9 7.2 0.00025 27.2 1.3 30 18-51 50-79 (135)
483 1sd4_A Penicillinase repressor 46.6 3.3 0.00011 27.9 -0.5 47 5-51 9-56 (126)
484 3mdq_A Exopolyphosphatase; str 46.5 12 0.00041 29.9 2.7 21 123-144 122-143 (315)
485 2dk5_A DNA-directed RNA polyme 46.1 11 0.00036 24.4 2.0 40 8-51 22-64 (91)
486 3oou_A LIN2118 protein; protei 46.0 13 0.00045 24.1 2.5 29 18-50 20-48 (108)
487 1z05_A Transcriptional regulat 45.5 6 0.0002 32.9 0.8 37 11-51 44-81 (429)
488 2qlz_A Transcription factor PF 44.2 4.8 0.00016 30.9 0.0 37 11-51 170-206 (232)
489 3llv_A Exopolyphosphatase-rela 43.7 43 0.0015 22.4 5.0 60 134-197 7-76 (141)
490 2x48_A CAG38821; archeal virus 43.5 11 0.00038 21.1 1.6 24 18-45 30-53 (55)
491 2fxa_A Protease production reg 43.3 8.1 0.00028 28.7 1.2 38 10-51 52-90 (207)
492 1g55_A DNA cytosine methyltran 43.1 18 0.00061 29.2 3.3 65 134-198 3-75 (343)
493 4em8_A Ribose 5-phosphate isom 43.0 13 0.00045 26.4 2.2 46 139-185 69-116 (148)
494 1bia_A BIRA bifunctional prote 42.9 12 0.0004 30.0 2.2 41 7-51 6-47 (321)
495 2xzm_8 RPS25E,; ribosome, tran 42.3 12 0.00039 26.4 1.7 29 19-51 63-91 (143)
496 2fbk_A Transcriptional regulat 41.8 9.5 0.00032 27.3 1.3 39 9-51 72-114 (181)
497 1cf7_A Protein (transcription 40.9 17 0.00058 22.7 2.2 32 17-51 28-59 (76)
498 3mkl_A HTH-type transcriptiona 40.7 15 0.00051 24.4 2.1 25 18-46 22-46 (120)
499 1u8b_A ADA polyprotein; protei 39.3 16 0.00056 24.7 2.2 31 14-48 87-118 (133)
500 3dv8_A Transcriptional regulat 39.2 17 0.0006 26.3 2.5 29 19-51 169-197 (220)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=9.2e-37 Score=255.11 Aligned_cols=188 Identities=20% Similarity=0.222 Sum_probs=166.1
Q ss_pred cchhccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC---------------------------CCC
Q 037818 4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------------GLS 54 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g---------------------------~~~ 54 (199)
.+|+++||||.|.+ +|+|++|||+++|+ +++ .++|+||+|+++| +.+
T Consensus 26 ~aa~eLglfd~L~~~~~p~t~~eLA~~~g~--~~~--~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~ 101 (353)
T 4a6d_A 26 FAACELGVFDLLAEAPGPLDVAAVAAGVRA--SAH--GTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTS 101 (353)
T ss_dssp HHHHHHTHHHHHHHSSSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred HHHHHcCHHHHHhcCCCCCCHHHHHHhhCc--CHH--HHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence 47999999999974 79999999999999 776 9999999999998 123
Q ss_pred hHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhC---CCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCC
Q 037818 55 YAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHG---EPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFK 131 (199)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g---~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~ 131 (199)
+.+++.+. .+..++.|.+|.+++|+|+ ++|...+| .++|+++.++|+....|+++|...+....+.+++.++ |+
T Consensus 102 ~~~~~~~~-~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~ 178 (353)
T 4a6d_A 102 QCSMLKYM-GRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LS 178 (353)
T ss_dssp CHHHHHHH-HHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GG
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 44555443 3567889999999999999 88988887 3578999999999999999999998888899999999 99
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC------CCCceEEeCCCCC-CCCcccEEEecC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS------ILGVTHIGGDTFK-SIPAADAIFMKW 199 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~------~~ri~~~~gd~f~-~~P~aD~~~l~~ 199 (199)
+..+|||||||+|.++.+++++||+++ ++++|+|+|++.+++ .+||++++||||+ +.|.+|+|++++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~ 252 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILAR 252 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEES
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeee
Confidence 999999999999999999999999999 999999999998864 2899999999997 466689999975
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=1.5e-34 Score=242.70 Aligned_cols=194 Identities=37% Similarity=0.662 Sum_probs=171.2
Q ss_pred cchhccccccccCC---CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C-----------------------
Q 037818 4 NECREGGKKVRLAN---TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G----------------------- 52 (199)
Q Consensus 4 ~~A~~lglf~~L~~---g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~----------------------- 52 (199)
++|+++|||+.|.+ +|+|++|||+++|+..+|+ +..++||||+|++.| .
T Consensus 38 ~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~ 117 (364)
T 3p9c_A 38 KNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLT 117 (364)
T ss_dssp HHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSS
T ss_pred HHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHc
Confidence 57999999999976 6999999999999610221 237999999999887 1
Q ss_pred -----CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhC
Q 037818 53 -----LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGY 127 (199)
Q Consensus 53 -----~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 127 (199)
.++++++.+..++.++++|.+|.+++|+|+ ++|+..+|.++|+|+..+|+..+.|+++|..++....+.+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~ 196 (364)
T 3p9c_A 118 PNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY 196 (364)
T ss_dssp CCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 135566666667778999999999999999 99999999999999999999999999999998888788888888
Q ss_pred CCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 128 NGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 128 ~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.+||+++.+|||+++|.+|+|++++
T Consensus 197 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~ 267 (364)
T 3p9c_A 197 HGFEGLGTLVDVGGGVGATVAAIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKW 267 (364)
T ss_dssp CTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEES
T ss_pred ccccCCCEEEEeCCCCCHHHHHHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehH
Confidence 6588889999999999999999999999999 9999999999999999999999999999999889999864
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=1.3e-33 Score=235.39 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=170.4
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----------------------CCChHHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----------------------GLSYAPYMLQ 61 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----------------------~~~~~~~~~~ 61 (199)
++|+++|||+.|.++|.|++|||+++|+ +++ .++||||+|++.| +.++++++.+
T Consensus 40 ~~a~~lglf~~l~~g~~t~~elA~~~g~--~~~--~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~ 115 (348)
T 3lst_A 40 RAAAAVGVADHLVDGPRTPAELAAATGT--DAD--ALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILM 115 (348)
T ss_dssp HHHHHHTGGGGGTTSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECTTTGGGSTTSSSCSHHHHHH
T ss_pred HHHHHcCchhHhhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhCCCEEecCCEEecCHHHHHHhcCCCccHHHHHHH
Confidence 4789999999999999999999999999 777 9999999999999 2357777777
Q ss_pred hcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818 62 HHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG 141 (199)
Q Consensus 62 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG 141 (199)
+.++.+++.|.+|++++|+|+ ++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||||
T Consensus 116 ~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~ 193 (348)
T 3lst_A 116 FTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGG 193 (348)
T ss_dssp HTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETC
T ss_pred hcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECC
Confidence 667768899999999999998 889999999999999999999999999999998888889999999 999999999999
Q ss_pred CccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-----CCCceEEeCCCCCCCCcccEEEecC
Q 037818 142 SAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-----ILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 142 G~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-----~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
|+|.++..+++++|+++ ++++|+|+++...+. .+||+++.+|+++++|..|+|++++
T Consensus 194 G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~ 255 (348)
T 3lst_A 194 GRGGFLLTVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKR 255 (348)
T ss_dssp TTSHHHHHHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEES
T ss_pred ccCHHHHHHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEeh
Confidence 99999999999999999 999999999883322 2789999999998899669999864
No 4
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.3e-33 Score=237.28 Aligned_cols=192 Identities=36% Similarity=0.651 Sum_probs=169.8
Q ss_pred cchhccccccccCC--C---CCCHHHHHHHcC-CCCCCC-cchHHHHHHHHhhCC----C--------------------
Q 037818 4 NECREGGKKVRLAN--T---PLSASQILTRIL-PSGDGD-AENLQRILRLLTSYG----G-------------------- 52 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g---~~t~~eLA~~~~-~~~~~~-~~~l~rlL~~l~~~g----~-------------------- 52 (199)
++|+++|||+.|.+ | |+|++|||+++| . +|+ +..++||||+|++.| .
T Consensus 39 ~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~ 116 (368)
T 3reo_A 39 KAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK 116 (368)
T ss_dssp HHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHH
T ss_pred HHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHH
Confidence 57999999999976 4 599999999998 4 443 238999999999976 1
Q ss_pred --------CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHh
Q 037818 53 --------LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVL 124 (199)
Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~ 124 (199)
.++++++.+..++.++..|.+|.+++|+|+ ++|+..+|.++|+|+..+|+..+.|+++|..++....+.++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~ 195 (368)
T 3reo_A 117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL 195 (368)
T ss_dssp HHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHH
Confidence 134566666566778899999999999998 89999999999999999999999999999998888788889
Q ss_pred hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+.++.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.+||+++.||||+++|.+|+|++++
T Consensus 196 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~ 269 (368)
T 3reo_A 196 EMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKW 269 (368)
T ss_dssp TTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEES
T ss_pred HhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEec
Confidence 9886588889999999999999999999999999 9999999999999999999999999999999889999864
No 5
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=9.2e-34 Score=234.62 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=168.2
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML 60 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~ 60 (199)
++|+++|||+.|.+||.|++|||+++|+ +++ .++||||+|++.| +.++++++.
T Consensus 23 ~~a~~lglf~~l~~g~~t~~elA~~~~~--~~~--~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~ 98 (332)
T 3i53_A 23 RVAATLRVADHIAAGHRTAAEIASAAGA--HAD--SLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLD 98 (332)
T ss_dssp HHHHHHTHHHHHHTTCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHC
T ss_pred HHHHHcChHHHHhcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHH
Confidence 4789999999999899999999999999 777 9999999999999 124566665
Q ss_pred HhcChhhH-hhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818 61 QHHQDALM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV 139 (199)
Q Consensus 61 ~~~~~~~~-~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv 139 (199)
+..++..+ +.|.+|++++++|+ ++|...+|.++|+++.++|+..+.|+++|...+....+.+++.++ |++..+||||
T Consensus 99 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDv 176 (332)
T 3i53_A 99 MNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDV 176 (332)
T ss_dssp TTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEE
T ss_pred HcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEe
Confidence 54444456 88999999999998 889988998999999999999999999999888777778889998 9989999999
Q ss_pred cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818 140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW 199 (199)
Q Consensus 140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~ 199 (199)
|||+|.++..+++++|+++ ++++|+|.+++.+++ .+||+++.+|+++++|. .|+|++++
T Consensus 177 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~ 243 (332)
T 3i53_A 177 GGGSGGLLSALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA 243 (332)
T ss_dssp TCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEES
T ss_pred CCChhHHHHHHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEeh
Confidence 9999999999999999999 999999999998874 27999999999998995 69999864
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=5.8e-33 Score=233.22 Aligned_cols=189 Identities=25% Similarity=0.341 Sum_probs=169.3
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC------CC------------------ChHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------GL------------------SYAPYM 59 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g------~~------------------~~~~~~ 59 (199)
.+|+++|||+.|.++|+|++|||+++|+ +++ .++||||+|++.| +. ++++++
T Consensus 56 ~~a~~lglf~~l~~g~~t~~eLA~~~g~--~~~--~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~ 131 (369)
T 3gwz_A 56 HVAVELGVPELLQEGPRTATALAEATGA--HEQ--TLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDA 131 (369)
T ss_dssp HHHHHHTTGGGGTTSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHCChhhhhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHH
Confidence 4789999999999999999999999999 777 9999999999999 11 244555
Q ss_pred HHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818 60 LQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV 139 (199)
Q Consensus 60 ~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv 139 (199)
.++.++..++.|.+|.+++++|+ ++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||
T Consensus 132 ~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDv 209 (369)
T 3gwz_A 132 RFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDI 209 (369)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEE
T ss_pred HHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEe
Confidence 55555557789999999999998 889988998999999999999999999999988888889999998 9999999999
Q ss_pred cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818 140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW 199 (199)
Q Consensus 140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~ 199 (199)
|||+|.++..+++++|+++ ++++|+|.+++.+++ .+||+++.+|+++++|. .|+|++++
T Consensus 210 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~ 276 (369)
T 3gwz_A 210 GGGRGSLMAAVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH 276 (369)
T ss_dssp TCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEES
T ss_pred CCCccHHHHHHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhh
Confidence 9999999999999999999 999999999998875 37899999999998996 69999864
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.97 E-value=2.8e-31 Score=221.98 Aligned_cols=191 Identities=28% Similarity=0.450 Sum_probs=166.3
Q ss_pred cchhccccccccCC--CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C-----C------------------
Q 037818 4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G-----L------------------ 53 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~-----~------------------ 53 (199)
++|+++|||+.|.+ +|.|++|||+++|+ +|. ...++|+||+|++.| . .
T Consensus 28 ~~a~~lgif~~L~~~~~~~t~~eLA~~~g~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l 105 (358)
T 1zg3_A 28 KSAMELGIADAIHNHGKPMTLSELASSLKL--HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL 105 (358)
T ss_dssp HHHHHHTHHHHHHHHTSCEEHHHHHHHTTC--CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTT
T ss_pred HHHHHCChHhHHhhcCCCcCHHHHHHhcCC--CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHH
Confidence 46899999999985 49999999999999 543 358999999999888 3 1
Q ss_pred ------ChHHHHHHhcChhhHhhhhhHHHHhhCCC-CChhhhhhCCCcccccccCchhHH--HHHHHHhccchhhHHHHh
Q 037818 54 ------SYAPYMLQHHQDALMSAWPLVHEAVLDPT-IEPFVKVHGEPAYSYYGKMPEMNG--LMRKAMSGVSVPFITSVL 124 (199)
Q Consensus 54 ------~~~~~~~~~~~~~~~~~~~~L~~~lr~g~-~~~~~~~~g~~~~e~~~~~~~~~~--~f~~~m~~~~~~~~~~~~ 124 (199)
++++++.+..++.+++.|.+|++++|+|+ .++|+..+|.++|+++.++|+..+ .|+++|...+.... .++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~ 184 (358)
T 1zg3_A 106 ISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVL 184 (358)
T ss_dssp CTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHH
T ss_pred hCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHH
Confidence 23455555556677899999999999983 288998899999999999999999 99999998877666 788
Q ss_pred hhC--CCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 125 DGY--NGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 125 ~~~--~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+.+ + |++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|++++
T Consensus 185 ~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~ 259 (358)
T 1zg3_A 185 QENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 259 (358)
T ss_dssp HHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEES
T ss_pred Hhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcc
Confidence 888 5 78889999999999999999999999999 9999999999999988889999999999888889999864
No 8
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.97 E-value=1.9e-31 Score=220.62 Aligned_cols=186 Identities=25% Similarity=0.373 Sum_probs=165.6
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----------------------CCChHHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----------------------GLSYAPYMLQ 61 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----------------------~~~~~~~~~~ 61 (199)
++|+++|||+.|.++|.|++|||+++|+ +++ .++|+||+|++.| +.++++++.+
T Consensus 26 ~~~~~lgi~~~l~~~~~t~~ela~~~~~--~~~--~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~ 101 (334)
T 2ip2_A 26 YVATRLGLADLIESGIDSDETLAAAVGS--DAE--RIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLF 101 (334)
T ss_dssp HHHHHTTHHHHHHTTCCSHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTTEEEECHHHHTTSSSTTCSHHHHHH
T ss_pred HHHHHcCcHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhCCceEecCCCeEecCHHHHHHhCCCccHHHHHHH
Confidence 4689999999998899999999999999 776 9999999999999 1145666666
Q ss_pred hcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818 62 HHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG 141 (199)
Q Consensus 62 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG 141 (199)
..++.. +.|.+|++++++|+ ++|+..+|.++|+++.++|+..+.|+++| ..+....+.+++.++ |++ .+||||||
T Consensus 102 ~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~ 176 (334)
T 2ip2_A 102 YGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGG 176 (334)
T ss_dssp HTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETC
T ss_pred hcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCC
Confidence 555444 88999999999998 89988899999999999999999999999 888777888999998 988 99999999
Q ss_pred CccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818 142 SAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW 199 (199)
Q Consensus 142 G~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~ 199 (199)
|+|.++..+++++|+++ ++++|+|.+++.+++. +||+++.+|+++++|. .|+|++++
T Consensus 177 G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 241 (334)
T 2ip2_A 177 GSGELTKAILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSR 241 (334)
T ss_dssp TTCHHHHHHHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEES
T ss_pred CchHHHHHHHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEch
Confidence 99999999999999999 9999999999888752 6899999999998887 49999864
No 9
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.97 E-value=3.5e-31 Score=220.90 Aligned_cols=190 Identities=27% Similarity=0.397 Sum_probs=167.6
Q ss_pred cchhccccccccCC--CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C---------------------CCh
Q 037818 4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G---------------------LSY 55 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~---------------------~~~ 55 (199)
++|+++|||+.|.+ +|.|++|||+++|+ +|. ...++|+||+|++.| . .++
T Consensus 34 ~~a~~lgif~~L~~~~~~~t~~ela~~~~~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~ 111 (352)
T 1fp2_A 34 KWAVEMNIPNIIQNHGKPISLSNLVSILQV--PSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCL 111 (352)
T ss_dssp HHHHHTTHHHHHHHHTSCEEHHHHHHHHTC--CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCC
T ss_pred HHHHHCChhhhhhhcCCCccHHHHHHHhCc--CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccH
Confidence 46899999999985 59999999999999 633 348999999999988 2 135
Q ss_pred HHHHHHhcChhhHhhhhhHHHHhh-CCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhC--CCCCC
Q 037818 56 APYMLQHHQDALMSAWPLVHEAVL-DPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGY--NGFKG 132 (199)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~L~~~lr-~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~ 132 (199)
++++.+..++.+++.|.+|++++| +|+ ++|...+|.++|+++.++|+..+.|+++|...+....+. ++.+ + |++
T Consensus 112 ~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~ 188 (352)
T 1fp2_A 112 APMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDG 188 (352)
T ss_dssp HHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTT
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-ccc
Confidence 667666666777889999999999 787 899988999999999999999999999999888776666 7778 5 888
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|..|+|++++
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~ 254 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKY 254 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEES
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeeh
Confidence 89999999999999999999999999 9999999999999988889999999999888889999864
No 10
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.97 E-value=1.8e-30 Score=218.22 Aligned_cols=193 Identities=37% Similarity=0.627 Sum_probs=155.5
Q ss_pred cchhccccccccCC-C-C---CCHHHHHHHcCC---CCCCCcchHHHHHHHHhhCC----C-------------------
Q 037818 4 NECREGGKKVRLAN-T-P---LSASQILTRILP---SGDGDAENLQRILRLLTSYG----G------------------- 52 (199)
Q Consensus 4 ~~A~~lglf~~L~~-g-~---~t~~eLA~~~~~---~~~~~~~~l~rlL~~l~~~g----~------------------- 52 (199)
++|+++|||+.|.+ | | +|++|||+++|+ +. .++..++|+||+|++.| .
T Consensus 42 ~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~-~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s 120 (372)
T 1fp1_D 42 NAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS-DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG 120 (372)
T ss_dssp HHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCT-THHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTG
T ss_pred HHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCC-cChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHH
Confidence 46899999999986 5 7 999999999998 21 12348999999999887 3
Q ss_pred ---------CChHHHHHHhcChhhHhhhhhHHHHhhCC-CCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHH
Q 037818 53 ---------LSYAPYMLQHHQDALMSAWPLVHEAVLDP-TIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITS 122 (199)
Q Consensus 53 ---------~~~~~~~~~~~~~~~~~~~~~L~~~lr~g-~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~ 122 (199)
.++++++.+..++.+++.|.+|++++|+| + ++|+..+|.++|+++.++|+..+.|+++|...+....+.
T Consensus 121 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 199 (372)
T 1fp1_D 121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKR 199 (372)
T ss_dssp GGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHH
Confidence 12445666555667788999999999998 6 889888898999999999999999999999888877788
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~ 199 (199)
+++.++.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|++++
T Consensus 200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~ 275 (372)
T 1fp1_D 200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA 275 (372)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEES
T ss_pred HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEec
Confidence 888885588889999999999999999999999999 9999999999999988899999999999888889999864
No 11
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.96 E-value=1.6e-29 Score=211.96 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=164.2
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC------CC-------------------ChHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------GL-------------------SYAPY 58 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g------~~-------------------~~~~~ 58 (199)
++|+++|||+.|.++|.|++|||+++|+ +++ .+.|+||+|++.| +. +++++
T Consensus 34 ~~~~~l~i~~~l~~~~~t~~eLA~~~g~--~~~--~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~ 109 (374)
T 1qzz_A 34 RVAATLRLVDHLLAGADTLAGLADRTDT--HPQ--ALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAW 109 (374)
T ss_dssp HHHHHTTHHHHHHTTCCSHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHH
T ss_pred HHHHHcChHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHH
Confidence 4688999999998899999999999999 776 9999999999999 12 23344
Q ss_pred HHHhcChhhH-hhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEE
Q 037818 59 MLQHHQDALM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLV 137 (199)
Q Consensus 59 ~~~~~~~~~~-~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vv 137 (199)
+.+..++..+ ..|.+|.+++++|+ ++|...+|.++|+++..+|+..+.|+++|........+.+++.++ +.+..+||
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vl 187 (374)
T 1qzz_A 110 LDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVL 187 (374)
T ss_dssp HCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEE
T ss_pred HHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEE
Confidence 4333333456 88999999999998 889888999999999999999999999999888777788999998 88889999
Q ss_pred EecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818 138 DVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW 199 (199)
Q Consensus 138 DvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~ 199 (199)
|||||+|.++..+++++|+++ ++++|+|.+++.+++. +||+++.+|+++++|. .|+|++++
T Consensus 188 DvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 256 (374)
T 1qzz_A 188 DVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256 (374)
T ss_dssp EETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred EECCCcCHHHHHHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEec
Confidence 999999999999999999999 9999999999988752 5899999999998888 59999864
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.96 E-value=8.1e-30 Score=213.66 Aligned_cols=186 Identities=20% Similarity=0.182 Sum_probs=150.2
Q ss_pred cchhccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----CCCh--------------HHHHHHh
Q 037818 4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----GLSY--------------APYMLQH 62 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----~~~~--------------~~~~~~~ 62 (199)
++|+++|||+.|.+ +|+|++|||+++|+ +++ .++||||+|++.| +..+ ......+
T Consensus 33 ~~a~~lgifd~L~~~~~~~t~~eLA~~~g~--~~~--~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~~~~~~~~~~~ 108 (363)
T 3dp7_A 33 RLMLKFGIFQLLSGKREGYTLQEISGRTGL--TRY--AAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEF 108 (363)
T ss_dssp HHHHHTTHHHHHHTCTTCBCHHHHHHHHTC--CHH--HHHHHHHHHHHHTSEEEETTEEEECHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHhCHHHHHHhcCCCCCHHHHHHHhCc--CHH--HHHHHHHHHhhCCCeEecCCEEecccchHHhhCCCcccchhee
Confidence 46899999999987 89999999999999 777 9999999999999 1111 0111222
Q ss_pred cChhhHhhhhhHHHHhhCCCCChhhhhhC--CCcccccccCchhHH----HHHHHHhccchhhHHHHhhhCCCCCCcceE
Q 037818 63 HQDALMSAWPLVHEAVLDPTIEPFVKVHG--EPAYSYYGKMPEMNG----LMRKAMSGVSVPFITSVLDGYNGFKGVKQL 136 (199)
Q Consensus 63 ~~~~~~~~~~~L~~~lr~g~~~~~~~~~g--~~~~e~~~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v 136 (199)
..+..+++|.+|++++|+|+ +++...+| .++|+++.++|+..+ .|+.+|..... ..++..+. ..+..+|
T Consensus 109 ~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~v 183 (363)
T 3dp7_A 109 NHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRL 183 (363)
T ss_dssp HHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEE
T ss_pred ecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEE
Confidence 34557889999999999998 77877888 689999999998776 37777765432 23444443 4677899
Q ss_pred EEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEecC
Q 037818 137 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMKW 199 (199)
Q Consensus 137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~~ 199 (199)
||||||+|.++..+++++|+++ ++++|+|.+++.+++. +||+++.+|++++ +|. .|+|++++
T Consensus 184 lDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 184 LDIGGNTGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp EEESCTTCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred EEeCCCcCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 9999999999999999999999 9999999999988752 6899999999984 675 59999864
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.96 E-value=3.9e-29 Score=208.72 Aligned_cols=189 Identities=17% Similarity=0.271 Sum_probs=164.5
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML 60 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~ 60 (199)
+.++++|||+.|.++|.|++|||+++|+ ++. .+.|+|++|++.| +.++++++.
T Consensus 37 ~~~~~l~i~~~l~~~~~t~~ela~~~~~--~~~--~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~ 112 (360)
T 1tw3_A 37 RTAATLRLVDHILAGARTVKALAARTDT--RPE--ALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHD 112 (360)
T ss_dssp HHHHHTTHHHHHHTTCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTC
T ss_pred HHHHHhCHHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHH
Confidence 4688999999998899999999999999 776 9999999999999 123445544
Q ss_pred HhcChh-hHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818 61 QHHQDA-LMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV 139 (199)
Q Consensus 61 ~~~~~~-~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv 139 (199)
+...+. .+..|.+|.+.+++|+ ++|...+|.++|+++..+|+....|..+|...+....+.+++.++ +.+..+||||
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDv 190 (360)
T 1tw3_A 113 LTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDV 190 (360)
T ss_dssp TTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEE
T ss_pred HhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEe
Confidence 433333 5789999999999998 788888899999999999999999999999888877788899998 8888999999
Q ss_pred cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818 140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW 199 (199)
Q Consensus 140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~ 199 (199)
|||+|.++..+++++|+++ ++.+|+|.+++.++++ +||+++.+|+++++|. .|+|++++
T Consensus 191 G~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 257 (360)
T 1tw3_A 191 GGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 257 (360)
T ss_dssp TCTTSHHHHHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred CCcCcHHHHHHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcc
Confidence 9999999999999999999 9999999999888752 4899999999998888 59998753
No 14
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.96 E-value=1.8e-28 Score=204.97 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=155.3
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------C---CChHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------G---LSYAP 57 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~---~~~~~ 57 (199)
++|+++|||+.|.++|.|++|||+++|+ +++ .++|+||+|++.| + .++++
T Consensus 49 ~~a~~lgif~~L~~~~~t~~eLA~~~g~--~~~--~l~rlLr~L~~~gll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~ 124 (359)
T 1x19_A 49 KAAIELDLFSHMAEGPKDLATLAADTGS--VPP--RLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTP 124 (359)
T ss_dssp HHHHHHTHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHSSSSCSBTTBCCHH
T ss_pred HHHHHcCcHHHHcCCCCCHHHHHHHhCc--ChH--HHHHHHHHHHhCCCeEeeCCeEecCHHHHHHhcCCCCCccccHHH
Confidence 4689999999999999999999999999 776 9999999999999 1 23555
Q ss_pred HHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCch---hHHHHHHHHhccch-hhHHHHhhhCCCCCCc
Q 037818 58 YMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE---MNGLMRKAMSGVSV-PFITSVLDGYNGFKGV 133 (199)
Q Consensus 58 ~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~ 133 (199)
++.+. .+.+++.|.+|++++++|+ + |+++.++|+ ..+.|..+|...+. ...+.+++.++ +.+.
T Consensus 125 ~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~ 191 (359)
T 1x19_A 125 VAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGV 191 (359)
T ss_dssp HHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTC
T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCC
Confidence 55543 3567889999999999877 3 778888999 99999999999888 77888999998 9888
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCcccEEEecC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPAADAIFMKW 199 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~aD~~~l~~ 199 (199)
.+|||||||+|.++..+++++|+++ ++++|+|.+++.+++ .+||+++.+|+++ ++|.+|+|++++
T Consensus 192 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~ 264 (359)
T 1x19_A 192 KKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 264 (359)
T ss_dssp CEEEEESCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEES
T ss_pred CEEEEECCcccHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEec
Confidence 9999999999999999999999999 999999999998874 2679999999997 577679999863
No 15
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.95 E-value=1.5e-27 Score=197.00 Aligned_cols=183 Identities=13% Similarity=0.034 Sum_probs=157.3
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML 60 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~ 60 (199)
++|+++|||+.|.++|.|++|||+++|+ +++ .++|+||+|++.| +.++++++.
T Consensus 24 ~~~~~l~i~~~l~~~~~t~~ela~~~~~--~~~--~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~ 99 (335)
T 2r3s_A 24 KAAVELNVFTAISQGIESSQSLAQKCQT--SER--GMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIE 99 (335)
T ss_dssp HHHHHTTHHHHHTTSEECHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHTCTTSTTCCGGGHH
T ss_pred HHHHHcChHHHHhcCCCCHHHHHHHhCC--Cch--HHHHHHHHHHhcCCeEecCCEEecCHHHHHHhccCCcHHHHHHHH
Confidence 4689999999999999999999999999 776 9999999999999 122445555
Q ss_pred HhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCC--CCcceEEE
Q 037818 61 QHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGF--KGVKQLVD 138 (199)
Q Consensus 61 ~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vvD 138 (199)
+..++..++.|.+|++++++|+ ++|. + |+++.++++....|.+.|..........+++.++ + .+..+|||
T Consensus 100 ~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlD 171 (335)
T 2r3s_A 100 FLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLD 171 (335)
T ss_dssp HHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEE
T ss_pred HhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEE
Confidence 5445467889999999999988 6553 3 8888889999999999999888877788888888 7 88899999
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEecC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMKW 199 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~~ 199 (199)
||||+|.++..+++++|+.+ ++++|++.+++.+++. +||+++.+|+++ ++|. .|+|++++
T Consensus 172 vG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~ 240 (335)
T 2r3s_A 172 ISASHGLFGIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPN 240 (335)
T ss_dssp ETCTTCHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEES
T ss_pred ECCCcCHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcc
Confidence 99999999999999999999 9999999888888753 589999999997 6777 49999864
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.94 E-value=4.1e-27 Score=195.96 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=146.8
Q ss_pred cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818 4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML 60 (199)
Q Consensus 4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~ 60 (199)
++|+++|||+.|.+ |.|++|||+++|+ +++ .++||||+|++.| +.++.+++.
T Consensus 42 ~~a~~lgif~~l~~-~~t~~elA~~~~~--~~~--~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~ 116 (352)
T 3mcz_A 42 HYAVADKLFDLTQT-GRTPAEVAASFGM--VEG--KAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVE 116 (352)
T ss_dssp HHHHHTTHHHHTTS-CBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHHSTTCTTCCHHHHH
T ss_pred HHHHHCChHHHhCC-CCCHHHHHHHhCc--ChH--HHHHHHHHHHHCCCeEecCCeeecCHHHHhhccCCChhhHHHHHH
Confidence 47899999999987 9999999999999 777 9999999999999 123444443
Q ss_pred HhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCC-cceEEEe
Q 037818 61 QHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKG-VKQLVDV 139 (199)
Q Consensus 61 ~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vvDv 139 (199)
+. ...++.|.+|++++|+|++.+|... .++..+|+..+.|..+|...... ...+++.++ +.+ ..+||||
T Consensus 117 ~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDv 186 (352)
T 3mcz_A 117 HQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDL 186 (352)
T ss_dssp HH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEE
T ss_pred Hh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEe
Confidence 32 3467899999999999984444332 12357899999999999873322 237888898 877 8999999
Q ss_pred cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEecC
Q 037818 140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMKW 199 (199)
Q Consensus 140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~~ 199 (199)
|||+|.++..+++++|+++ ++++|+|.+++.+++. +||+++.+|+++. .|. .|+|++++
T Consensus 187 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 256 (352)
T 3mcz_A 187 AGGHGTYLAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256 (352)
T ss_dssp TCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred CCCcCHHHHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence 9999999999999999999 9999999998887742 6899999999984 565 49999864
No 17
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.00 E-value=3.9e-11 Score=100.47 Aligned_cols=162 Identities=12% Similarity=0.024 Sum_probs=99.6
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----CCChH--H----HHHHhcC--------hh-----
Q 037818 10 GKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----GLSYA--P----YMLQHHQ--------DA----- 66 (199)
Q Consensus 10 glf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----~~~~~--~----~~~~~~~--------~~----- 66 (199)
|+|..| ++|.|+.|||..+|+ ++. .++++|+.|++.| ...++ + ++..... ..
T Consensus 47 ~ll~~L-~~~~t~~eLa~~~g~--~~~--~v~~~L~~l~~~gll~~~~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g 121 (373)
T 2qm3_A 47 NVLSAV-LASDDIWRIVDLSEE--PLP--LVVAILESLNELGYVTFEDGVKLTEKGEELVAEYGIGKRYDFTCPHCQGKT 121 (373)
T ss_dssp HHHHHH-HHCSCHHHHHHHHTS--CHH--HHHHHHHHHHHTTSEECSSSSEECHHHHHHHHHHTCCCCCC----------
T ss_pred HHHHHh-cCCCCHHHHHHHhCC--ChH--HHHHHHHHHhhCCcEEECCCEEECHHHHHHHHhcCccccccccchhhcCCC
Confidence 788888 789999999999999 766 9999999999988 21111 1 1111000 00
Q ss_pred -hHh----hhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818 67 -LMS----AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG 141 (199)
Q Consensus 67 -~~~----~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG 141 (199)
.+. .|..+.+.++... .+. ..|+.....++.. ....+ ......+ . ...+|||||
T Consensus 122 ~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~~~~~~~~--~~~~l---------~~~~~~~-~-~~~~VLDlG- 180 (373)
T 2qm3_A 122 VDLQAFADLLEQFREIVKDRP-EPL------HEFDQAYVTPETT--VARVI---------LMHTRGD-L-ENKDIFVLG- 180 (373)
T ss_dssp --CGGGHHHHHHHHHHHTTCC-CCC------GGGTCCCBCHHHH--HHHHH---------HHHHTTC-S-TTCEEEEES-
T ss_pred cchhhhHHHHHHHHHHHhcCC-ccc------hhcCCeecCHHHH--HHHHH---------HHhhcCC-C-CCCEEEEEC-
Confidence 000 1223333333222 100 0011100111111 11000 0111112 2 347999999
Q ss_pred CccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-----ccEEEec
Q 037818 142 SAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-----ADAIFMK 198 (199)
Q Consensus 142 G~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-----aD~~~l~ 198 (199)
|+|.++..+++..|..+ ++.+|+ |..++.++++ +||+++.+|+++++|. .|+|+++
T Consensus 181 G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 181 DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 99999999999999899 999998 8999888763 4899999999986653 3999975
No 18
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.68 E-value=9.7e-09 Score=79.12 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=53.3
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..+++..| + ++.+|. |..++.+++. ++++++.+|+.+ ++|. .|++++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 110 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI 110 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEc
Confidence 57999999999999999999988 6 889998 7888877653 789999999997 5554 3988864
No 19
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=98.66 E-value=6.5e-08 Score=74.99 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=59.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc-ccE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA-ADA 194 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~-aD~ 194 (199)
.+.+.++......+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++ ..+++++.+|+.+ +.+. .|+
T Consensus 34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 3444443124558999999999999999999999999 999998 777777654 3589999999997 4544 399
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 113 v~~~ 116 (234)
T 3dtn_A 113 VVSA 116 (234)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
No 20
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=98.61 E-value=3.6e-08 Score=78.58 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHC--CCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCcccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPAADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~aD~~~l~ 198 (199)
+...+|||||||+|.++..+++++ |+++ ++.+|. |..++.|++ ..+|+++.+|+.+ +++..|++++.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~ 146 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 146 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceee
Confidence 456799999999999999999985 6788 999997 777887764 2689999999987 66667888764
No 21
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=98.56 E-value=2.3e-07 Score=73.43 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=60.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEE
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIF 196 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~ 196 (199)
..+.+.++ .....+|||||||+|.++..+++ |..+ ++.+|+ |..++.+++..+++++.+|+.+ ++|. .|+++
T Consensus 24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34555555 56678999999999999999998 7788 999998 7788888887899999999987 5664 39998
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 100 ~~ 101 (261)
T 3ege_A 100 SI 101 (261)
T ss_dssp EE
T ss_pred Ec
Confidence 75
No 22
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=98.55 E-value=8.2e-08 Score=76.75 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC----C---CCceEEeCCCCCCCCc-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS----I---LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~----~---~ri~~~~gd~f~~~P~- 191 (199)
.++..++ .....+|||+|||+|.++..+++. +|..+ ++.+|. |..++.+++ . ++++++.+|+.+++|.
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4555555 667789999999999999999998 89999 999998 777776653 2 5899999999987665
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|++++
T Consensus 179 ~fD~Vi~ 185 (275)
T 1yb2_A 179 MYDAVIA 185 (275)
T ss_dssp CEEEEEE
T ss_pred CccEEEE
Confidence 399886
No 23
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=98.54 E-value=4.9e-08 Score=76.82 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=64.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP 190 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P 190 (199)
...++..++ .....+|||+|||+|.++..+++. .|..+ ++.+|. |..++.++++ +|++++.+|+.+.+|
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 159 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence 345566666 667789999999999999999999 89999 999998 7888877753 569999999998777
Q ss_pred c--ccEEEec
Q 037818 191 A--ADAIFMK 198 (199)
Q Consensus 191 ~--aD~~~l~ 198 (199)
. .|++++.
T Consensus 160 ~~~~D~v~~~ 169 (255)
T 3mb5_A 160 EENVDHVILD 169 (255)
T ss_dssp CCSEEEEEEC
T ss_pred CCCcCEEEEC
Confidence 6 3998863
No 24
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=98.53 E-value=1.6e-07 Score=71.36 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=61.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC---c
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP---A 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P---~ 191 (199)
.++..++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++ ++++++.+|+.+.++ .
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 4455665 66678999999999999999999999999 999998 7888887753 789999999987543 3
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 109 ~D~i~~~ 115 (204)
T 3e05_A 109 PDRVFIG 115 (204)
T ss_dssp CSEEEES
T ss_pred CCEEEEC
Confidence 5998864
No 25
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=98.53 E-value=1.9e-07 Score=75.79 Aligned_cols=89 Identities=11% Similarity=0.040 Sum_probs=65.7
Q ss_pred HHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCc
Q 037818 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGV 178 (199)
Q Consensus 107 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri 178 (199)
.|.+ +..........+++.++......+|||||||+|.++..+++++ ..+ ++.+|. |..++.++++ +++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v 169 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHV 169 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCce
Confidence 3443 3333344445566665435566899999999999999999986 578 999998 7778777642 589
Q ss_pred eEEeCCCCC-CCCc--ccEEEec
Q 037818 179 THIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 179 ~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
+++.+|+.+ ++|. .|+|+..
T Consensus 170 ~~~~~d~~~~~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 170 RSRVCNMLDTPFDKGAVTASWNN 192 (312)
T ss_dssp EEEECCTTSCCCCTTCEEEEEEE
T ss_pred EEEECChhcCCCCCCCEeEEEEC
Confidence 999999997 5664 3999764
No 26
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=98.51 E-value=7.7e-08 Score=73.33 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=59.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~ 191 (199)
..+++.++ .... +|||||||+|.++..++++ |..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|.
T Consensus 34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 34445554 4444 9999999999999999999 8888 999998 7777777643 589999999997 6665
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 110 ~~~D~v~~~ 118 (219)
T 3dlc_A 110 NYADLIVSR 118 (219)
T ss_dssp TCEEEEEEE
T ss_pred ccccEEEEC
Confidence 3999875
No 27
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=98.49 E-value=1e-07 Score=74.30 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=60.2
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~- 191 (199)
...+++.++ .....+|||||||+|.++..+++..| .+ ++.+|. |..++.++++ +++++..+|+..++|.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 345556555 66678999999999999999999999 78 999995 7777777652 5799999998666654
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|++.
T Consensus 157 ~~fD~Ii~~ 165 (235)
T 1jg1_A 157 APYDVIIVT 165 (235)
T ss_dssp CCEEEEEEC
T ss_pred CCccEEEEC
Confidence 3998864
No 28
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=98.48 E-value=1.3e-07 Score=74.48 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=59.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~ 191 (199)
...+++.++ .....+|||||||+|.++..+++..+ + ++.+|+ |..++.+++. ++++++.+|+.+ ++|.
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 345566665 56678999999999999999999986 6 899997 7777776642 689999999987 6665
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|+..
T Consensus 102 ~~fD~V~~~ 110 (260)
T 1vl5_A 102 ERFHIVTCR 110 (260)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEEh
Confidence 3999865
No 29
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=98.47 E-value=8e-08 Score=74.96 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=55.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l 197 (199)
...+|+|||||+|.++..+++.+|..+ ++.+|. |..++.|+++ +||++..+|.++++|. .|++++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi 90 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI 90 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence 447999999999999999999999999 999997 6777777753 6899999999987763 588775
No 30
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=98.46 E-value=4.8e-07 Score=72.92 Aligned_cols=90 Identities=19% Similarity=0.086 Sum_probs=65.4
Q ss_pred HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC--------C
Q 037818 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS--------I 175 (199)
Q Consensus 106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~--------~ 175 (199)
..|.+....+.......+.... -....+|||||||+|.++..+++++ |..+ ++.+|. |..++.+++ .
T Consensus 12 ~~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~ 88 (299)
T 3g5t_A 12 ERYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDTY 88 (299)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-CC
T ss_pred HHHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCCC
Confidence 3455444444443333343332 2456899999999999999999997 8888 999998 777777764 4
Q ss_pred CCceEEeCCCCC-CCCc--------ccEEEec
Q 037818 176 LGVTHIGGDTFK-SIPA--------ADAIFMK 198 (199)
Q Consensus 176 ~ri~~~~gd~f~-~~P~--------aD~~~l~ 198 (199)
++++++.+|+.+ +++. .|+|++.
T Consensus 89 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~ 120 (299)
T 3g5t_A 89 KNVSFKISSSDDFKFLGADSVDKQKIDMITAV 120 (299)
T ss_dssp TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEE
T ss_pred CceEEEEcCHHhCCccccccccCCCeeEEeHh
Confidence 799999999987 4443 3998864
No 31
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=98.46 E-value=3e-07 Score=72.28 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=60.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCCc--c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P~--a 192 (199)
..+++.++ .....+|||||||+|.++..+++++ ..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|. .
T Consensus 45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 45566666 6677899999999999999999998 678 999998 6777766643 789999999997 5665 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 122 D~v~~~ 127 (266)
T 3ujc_A 122 DLIYSR 127 (266)
T ss_dssp EEEEEE
T ss_pred EEEeHH
Confidence 999875
No 32
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=98.45 E-value=1.4e-07 Score=72.24 Aligned_cols=76 Identities=26% Similarity=0.274 Sum_probs=62.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~ 191 (199)
..+++.++ .....+|||||||+|.++..+++.. |..+ ++.+|. |..++.+++. +++++..+|+.+ +++.
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 35566666 6677899999999999999999997 8889 999998 7778777653 689999999987 5665
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 105 ~~fD~v~~~ 113 (219)
T 3dh0_A 105 NTVDFIFMA 113 (219)
T ss_dssp SCEEEEEEE
T ss_pred CCeeEEEee
Confidence 3999864
No 33
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=98.44 E-value=2.6e-07 Score=73.37 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=57.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
+....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|. .|+|++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence 56678999999999999999999999999 999998 7777777642 689999999997 5554 3999875
No 34
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=98.43 E-value=4.4e-07 Score=71.18 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~- 191 (199)
.+++.+.......+|||||||+|.++..+++.+|. + ++.+|. |..++.+++. +|++++.+|+.+ ++|.
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 34444422555679999999999999999999996 7 999998 7777776642 679999999976 5554
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|+++..
T Consensus 114 ~fD~v~~~ 121 (257)
T 3f4k_A 114 ELDLIWSE 121 (257)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEec
Confidence 3999864
No 35
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=98.43 E-value=5.3e-07 Score=68.72 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=57.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCCCCCc--ccEEE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFKSIPA--ADAIF 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~~~P~--aD~~~ 196 (199)
.+.+.+.......+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. ++++++.+|+.+..|. .|+++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 34444432445579999999999999999999 557 899997 7777777653 7899999999876554 39998
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 113 ~~ 114 (218)
T 3ou2_A 113 FA 114 (218)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 36
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=98.42 E-value=3.4e-07 Score=73.83 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=36.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
....+|||||||+|.++..+++++|..+ ++.+|. |..++.|+
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~ 87 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSAR 87 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHH
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHH
Confidence 3568999999999999999999999999 999998 66666654
No 37
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=98.42 E-value=2.7e-07 Score=70.78 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=55.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++ ++++++.+|+.+ + +|. .|++++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 347899999999999999999999999 999997 7888777642 689999999986 3 444 3888764
No 38
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=98.42 E-value=3.6e-07 Score=71.66 Aligned_cols=74 Identities=14% Similarity=0.008 Sum_probs=58.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCc--ccE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPA--ADA 194 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~--aD~ 194 (199)
.+.+.++ .....+|||||||+|.++..+++..+. + ++.+|. |..++.+++ ..+++++.+|+.+ ++|. .|+
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 4555555 445689999999999999999999776 7 999998 777777765 3789999999986 5654 399
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
|++.
T Consensus 112 v~~~ 115 (253)
T 3g5l_A 112 VLSS 115 (253)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9875
No 39
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=98.42 E-value=4e-07 Score=72.09 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=60.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~ 191 (199)
..+++.++ .....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++ .+|++++.+|+.+ ++|.
T Consensus 51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45667776 6677899999999999999999987 578 999998 677776654 2589999999987 6665
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|+..
T Consensus 128 ~~fD~v~~~ 136 (273)
T 3bus_A 128 ASFDAVWAL 136 (273)
T ss_dssp TCEEEEEEE
T ss_pred CCccEEEEe
Confidence 3998864
No 40
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=98.42 E-value=4.2e-07 Score=71.30 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=61.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEe
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
.+++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++ .++++++.+|+.+..|. .|+++.
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4556665 56668999999999999999999999999 999998 677777765 47899999999862244 399887
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 102 ~ 102 (259)
T 2p35_A 102 N 102 (259)
T ss_dssp E
T ss_pred e
Confidence 5
No 41
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=98.42 E-value=2.9e-07 Score=73.73 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=56.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~ 198 (199)
.....+|||||||+|.++..+++.+|. .+ ++.+|+ |..++.+++. .+++++.+|+.+ +.+.. |++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 96 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH 96 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEEC
Confidence 556789999999999999999999995 78 999998 6777766542 389999999997 45543 998875
No 42
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=98.41 E-value=5e-07 Score=71.80 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=54.2
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCcc--cEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
..+|||||||+|.++..+++.+. + ++.+|. |..++.|++.++|+++.+|+-+ ++|.+ |+|+..
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~ 106 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAA 106 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred CCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEe
Confidence 46899999999999999998874 5 788997 6789999999999999999986 67763 998864
No 43
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=98.41 E-value=4.2e-07 Score=71.95 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
.....+|||||||+|.++..+++. |..+ ++.+|+ |..++.+++. ++++++.+|+.+ ++|. .|+|+..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEc
Confidence 456689999999999999999998 8889 999998 7777777642 679999999986 5554 3999864
No 44
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=98.41 E-value=3.3e-07 Score=79.12 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=59.5
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..+++ .|..+ ++.+|..+.++.|++. +||+++.+|+.+ ++|.
T Consensus 148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 45556555 44558999999999999998887 68888 9999998777666542 789999999998 6666
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+|+..
T Consensus 225 fD~Ivs~ 231 (480)
T 3b3j_A 225 VDIIISE 231 (480)
T ss_dssp EEEEECC
T ss_pred eEEEEEe
Confidence 4999864
No 45
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=98.40 E-value=5.5e-07 Score=70.56 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=58.7
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC-CCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS-IPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~-~P~ 191 (199)
..+++.++ .....+|||||||+|.++..+++.+ ..+ ++.+|. |..++.+++. ++++++.+|+.+. .+.
T Consensus 26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34555565 6666899999999999999999998 678 999998 7777777542 5899999999873 333
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|++++.
T Consensus 103 ~fD~V~~~ 110 (256)
T 1nkv_A 103 KCDVAACV 110 (256)
T ss_dssp CEEEEEEE
T ss_pred CCCEEEEC
Confidence 3998863
No 46
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=98.40 E-value=2.2e-07 Score=78.41 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=59.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC---------------CCCceEEeCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS---------------ILGVTHIGGD 184 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~---------------~~ri~~~~gd 184 (199)
..+++.++ .....+|+|||||+|.++..+++.++.-+ ++.+|+. ..++.|++ .++|+++.||
T Consensus 163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555555 66678999999999999999999998877 9999984 45554432 2689999999
Q ss_pred CCC-CCC----cccEEEec
Q 037818 185 TFK-SIP----AADAIFMK 198 (199)
Q Consensus 185 ~f~-~~P----~aD~~~l~ 198 (199)
+++ +++ .+|+|+++
T Consensus 241 ~~~lp~~d~~~~aDVVf~N 259 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVN 259 (438)
T ss_dssp TTSHHHHHHHHTCSEEEEC
T ss_pred ccCCccccccCCccEEEEc
Confidence 997 443 46999875
No 47
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=98.37 E-value=5.1e-07 Score=75.59 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=61.4
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCCCCCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFKSIPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~~~P~ 191 (199)
.+++.++ .....+|+|+|||+|.++..+++++|..+ ++.+|. |..++.++++ .++++..+|+++++|.
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4556665 44448999999999999999999999999 999998 7778877753 2588899999998775
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|+++
T Consensus 291 ~~fD~Ii~n 299 (375)
T 4dcm_A 291 FRFNAVLCN 299 (375)
T ss_dssp TCEEEEEEC
T ss_pred CCeeEEEEC
Confidence 3999864
No 48
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=98.37 E-value=2e-07 Score=72.86 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=55.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l 197 (199)
...+|+|||||+|.++..+++..|..+ ++.+|. |..++.|+++ +||++..||.++.++. .|++++
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi 96 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI 96 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence 447999999999999999999999999 999997 6777777753 6899999999986543 498875
No 49
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=98.36 E-value=4.2e-07 Score=72.99 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
.....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++. ++++++.+|+.+ ++|. .|+|++.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence 5666899999999999999999987 457 999998 6777776642 689999999997 6665 3998864
No 50
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=98.35 E-value=2.8e-07 Score=68.12 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=57.4
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--- 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--- 191 (199)
+++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++ +++ ++.+|..+.+|.
T Consensus 17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344455 55668999999999999999999999999 999998 6677776642 378 888998765443
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|++++.
T Consensus 94 ~~D~i~~~ 101 (178)
T 3hm2_A 94 NPDVIFIG 101 (178)
T ss_dssp CCSEEEEC
T ss_pred CCCEEEEC
Confidence 4998864
No 51
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=98.35 E-value=2.1e-07 Score=75.04 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=55.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-c---cEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-A---DAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-a---D~~~l~ 198 (199)
...+|||||||+|.++..+++. |+.+ ++.+|. |..++.++++ +|++++.+|++++++. . |+++.+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence 3468999999999999999999 9999 999998 7888887753 4799999999986543 5 988764
No 52
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=98.34 E-value=6e-07 Score=71.64 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=56.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
...+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++ ++++++.+|+++++|. .|+++.+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n 183 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN 183 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence 446999999999999999999999999 999998 7777777653 5899999999987644 3998864
No 53
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=98.34 E-value=9.5e-07 Score=67.71 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=51.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHh----cCCC------CCCceEEeCCCCC-CCCcc-cEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVG----EAPS------ILGVTHIGGDTFK-SIPAA-DAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~----~a~~------~~ri~~~~gd~f~-~~P~a-D~~~ 196 (199)
.....+|||||||+|.++..+++.+|..+ ++.+|.. ..++ .+++ .++++++.+|+.+ +++.. |.++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence 45568999999999999999999999999 9999984 4333 2332 2689999999987 45432 5554
No 54
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=98.33 E-value=2.8e-07 Score=70.68 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~ 195 (199)
....+|||||||+|.++..++++.|..+ ++.+|. |..++.+++. ++++++.+|+.. +.+. .|++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 3457999999999999999999999999 999998 7777777642 289999999965 3332 4999
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
++.
T Consensus 107 ~~~ 109 (219)
T 3jwg_A 107 TVI 109 (219)
T ss_dssp EEE
T ss_pred EEH
Confidence 864
No 55
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=98.33 E-value=5.3e-07 Score=71.13 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=53.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC-CCCcc-cEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK-SIPAA-DAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~-~~P~a-D~~~l~ 198 (199)
....+|||||||+|.++..+++..+ + ++.+|+ |..++.+++ ..+++++.+|+.+ +.+.. |++++.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEc
Confidence 3457999999999999999999865 6 888998 788888876 3799999999987 45443 999864
No 56
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=98.33 E-value=9.6e-07 Score=68.46 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=57.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--cc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--AD 193 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD 193 (199)
+.+.+.++ .....+|||||||+|.++..+++..+ .+ ++.+|. |..++.+++. .+++++.+|+.+ ++|. .|
T Consensus 33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 34555555 44568999999999999999998843 26 889998 6777777643 579999999986 5554 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 110 ~v~~~ 114 (243)
T 3bkw_A 110 LAYSS 114 (243)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98864
No 57
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.33 E-value=2.8e-07 Score=72.67 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=55.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l 197 (199)
...+|+|||||+|.++..+++..|..+ ++.+|. |..++.|+++ +||++..+|.++.++. .|++++
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi 96 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI 96 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence 447999999999999999999999999 999997 6777777653 6899999999986543 588775
No 58
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=98.32 E-value=1e-06 Score=69.12 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=70.2
Q ss_pred CchhHHHHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC
Q 037818 101 MPEMNGLMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 101 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
+|... .|...|....... +..++..++ .....+|||+|||+|.++..+++. .|..+ ++.+|. |..++.+++
T Consensus 63 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~ 139 (258)
T 2pwy_A 63 RPTLE-EYLLHMKRSATPTYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAER 139 (258)
T ss_dssp CCCHH-HHHHHSCCSSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHH
T ss_pred CCCHH-HHhhcCccccccccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHH
Confidence 34433 3445554443332 235666666 777789999999999999999999 78899 999997 777777664
Q ss_pred C-------CCceEEeCCCCCC-CCc--ccEEEec
Q 037818 175 I-------LGVTHIGGDTFKS-IPA--ADAIFMK 198 (199)
Q Consensus 175 ~-------~ri~~~~gd~f~~-~P~--aD~~~l~ 198 (199)
+ +++++..+|+.+. +|. .|++++.
T Consensus 140 ~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~ 173 (258)
T 2pwy_A 140 NVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD 173 (258)
T ss_dssp HHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred HHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence 2 6899999999974 765 4998863
No 59
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=98.32 E-value=4e-07 Score=69.79 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~ 195 (199)
....+|||||||+|.++..+++++|..+ ++.+|. |..++.+++. ++++++.+|+.. +.+. .|++
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 3457999999999999999999999999 999997 6777776542 289999999864 3332 4999
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
++.
T Consensus 107 ~~~ 109 (217)
T 3jwh_A 107 TVI 109 (217)
T ss_dssp EEE
T ss_pred eeH
Confidence 864
No 60
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=98.31 E-value=6.2e-07 Score=71.85 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCcceEEEecCCc---cHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSA---GDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~---G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~ 187 (199)
.+..+|||||||+ |.++..+.+.+|+.+ ++.+|+ |.+++.+++ .++++++.+|+++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD 139 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence 3457999999999 999888889999999 999999 889988875 3789999999986
No 61
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=98.31 E-value=6.9e-07 Score=69.65 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=59.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~ 191 (199)
...+++..+ .....+|||||||+|.++..+++..+ + ++.+|. |..++.+++. ++++++.+|+.+ +++.
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 445667676 77778999999999999999999986 6 889997 6777776642 689999999976 5554
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+++..
T Consensus 86 ~~fD~v~~~ 94 (239)
T 1xxl_A 86 DSFDIITCR 94 (239)
T ss_dssp TCEEEEEEE
T ss_pred CcEEEEEEC
Confidence 3998865
No 62
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=98.29 E-value=1e-06 Score=65.33 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=50.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..++++. + ++.+|. |..++. .++++++.+|++++++. .|+++.+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n 85 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFN 85 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEEC
T ss_pred CCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEEC
Confidence 3699999999999999999988 7 999998 566665 67899999999987764 3998864
No 63
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=3.5e-07 Score=67.64 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--cc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--AD 193 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD 193 (199)
+.+.++ .....+|||||||+|.++..+++ +..+ ++.+|. |..++.++++ ++++++.+|+.+++|. .|
T Consensus 27 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 55567999999999999999998 8888 999997 6777777653 6899999999886664 49
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 103 ~i~~~ 107 (183)
T 2yxd_A 103 KAFIG 107 (183)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 98875
No 64
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=98.28 E-value=4.9e-07 Score=68.67 Aligned_cols=65 Identities=11% Similarity=-0.021 Sum_probs=54.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
..+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++ ++++++.+|+.+..|. .|+++.+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~ 139 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEe
Confidence 47999999999999999999999999 999997 7777777642 4599999999975443 3998864
No 65
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=98.28 E-value=1.8e-06 Score=67.15 Aligned_cols=72 Identities=19% Similarity=0.382 Sum_probs=55.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc--ccEE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA--ADAI 195 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~--aD~~ 195 (199)
.+...++.+....+|||||||+|.++..+++. ..+ ++.+|+ |..++.+++. ++++.+|+.+ ++|. .|+|
T Consensus 31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE
T ss_pred HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE
Confidence 34444442355689999999999999999998 557 889997 6778877755 9999999876 5665 3998
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
+..
T Consensus 106 ~~~ 108 (240)
T 3dli_A 106 MIS 108 (240)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
No 66
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=98.27 E-value=1.1e-05 Score=64.57 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=87.6
Q ss_pred HHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCch
Q 037818 26 LTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 103 (199)
Q Consensus 26 A~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~ 103 (199)
.+++|+..++.+ -.-+|+.+-+...|-.++..++.....+....-|..+-+.+-.|. +.| | ++|.
T Consensus 25 ~~~~Gi~~~~~k~~~~~~Rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lt~~~-t~F--------f----Rd~~ 91 (274)
T 1af7_A 25 YQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNL-TAF--------F----REAH 91 (274)
T ss_dssp HHHHCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHHHCTTCTHHHHHHHHHCCCC-CCT--------T----TTTT
T ss_pred HHHHCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHccCCCHHHHHHHHHHHhhcC-ccc--------c----CChH
Confidence 357787323222 123466666666665566666554432222345888888887776 422 1 2332
Q ss_pred hHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC----CCCeeeeccc-hHHHhcCCC
Q 037818 104 MNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 104 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~~v~Dl-p~v~~~a~~ 174 (199)
.-..+.+. ++.. . +..+|+|+|||+|. +++.+++..| +.+ ++..|+ |.+++.|++
T Consensus 92 ~f~~l~~~-----------llp~-~---~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~ 155 (274)
T 1af7_A 92 HFPILAEH-----------ARRR-H---GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARS 155 (274)
T ss_dssp HHHHHHHH-----------HHHS-C---SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHH
T ss_pred HHHHHHHH-----------ccCC-C---CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHh
Confidence 22222211 1111 1 23689999999998 6667777766 467 999998 667766643
Q ss_pred C-------------------------------------CCceEEeCCCCC-CCC--c-ccEEEecC
Q 037818 175 I-------------------------------------LGVTHIGGDTFK-SIP--A-ADAIFMKW 199 (199)
Q Consensus 175 ~-------------------------------------~ri~~~~gd~f~-~~P--~-aD~~~l~~ 199 (199)
. ++|+|..+|+++ ++| . -|+|+.++
T Consensus 156 ~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn 221 (274)
T 1af7_A 156 GIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN 221 (274)
T ss_dssp TEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS
T ss_pred cCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC
Confidence 1 369999999998 466 2 39998764
No 67
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=98.26 E-value=1e-06 Score=71.01 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..++++++ .+ ++.+|+ |..++.+++. ++|+++.+|+.+- +.
T Consensus 62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 35666666 67778999999999999999999988 78 999998 7777777642 4899999999764 44
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+|+..
T Consensus 138 fD~v~~~ 144 (302)
T 3hem_A 138 VDRIVSL 144 (302)
T ss_dssp CSEEEEE
T ss_pred ccEEEEc
Confidence 4988764
No 68
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=98.26 E-value=9.9e-07 Score=70.38 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=62.6
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~ 191 (199)
..++..++ .....+|||+|||+|.++..++++ .|..+ ++.+|. |..++.++++ +++++..+|+.+.+|.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 35666666 666789999999999999999999 78999 999997 7788777653 5899999999987665
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 180 ~~~D~V~~~ 188 (277)
T 1o54_A 180 KDVDALFLD 188 (277)
T ss_dssp CSEEEEEEC
T ss_pred CccCEEEEC
Confidence 4998863
No 69
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=98.25 E-value=1.2e-07 Score=72.01 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=45.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCC------c-ccEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIP------A-ADAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P------~-aD~~~l 197 (199)
....+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++ .+++++.+|++++++ . .|+++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 5668999999999999999999999999 999998 7888888764 178999999987544 2 398886
No 70
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=98.25 E-value=6.5e-07 Score=68.89 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=52.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-C--CCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-S--IPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~--~P~--aD~~~l 197 (199)
...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.|++ .++|+++.+|..+ + +|. -|.+++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence 347899999999999999999999999 999997 667776654 2689999999876 2 454 277765
No 71
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=98.24 E-value=1.2e-06 Score=72.25 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcc-c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAA-D 193 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~a-D 193 (199)
..+++.++ .....+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++ .+++++.+|+++..+.. |
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 45666664 34457999999999999999999999999 999998 5667777652 34778999998754443 9
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+|+++
T Consensus 264 ~Iv~~ 268 (343)
T 2pjd_A 264 MIISN 268 (343)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99874
No 72
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=98.23 E-value=2e-06 Score=67.49 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
.....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++ .++++++.+|+.+ ++|. .|++++.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 111 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVV 111 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEEC
Confidence 556689999999999999999987 457 889997 666666543 3789999999976 5555 3998864
No 73
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.23 E-value=8.8e-07 Score=70.58 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=58.6
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCcc-cEEE
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPAA-DAIF 196 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~a-D~~~ 196 (199)
..+++.++ .....+|||||||+|.++..+++ |..+ ++.+|. |..++.+++. ++++++.+|+.+ +.+.. |+++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 34555555 55668999999999999999998 7888 999998 6777777653 789999999987 44443 9988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
..
T Consensus 123 ~~ 124 (279)
T 3ccf_A 123 SN 124 (279)
T ss_dssp EE
T ss_pred Ec
Confidence 65
No 74
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=98.23 E-value=1.5e-06 Score=66.40 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=56.8
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C-CceEEeCCCCCC---CCc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L-GVTHIGGDTFKS---IPA 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~-ri~~~~gd~f~~---~P~ 191 (199)
+++.++ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.++++ + +++++.+|+.+. .+.
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344455 566689999999999999999998 777 999998 7778777642 4 899999999873 333
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 123 ~D~v~~~ 129 (204)
T 3njr_A 123 PEAVFIG 129 (204)
T ss_dssp CSEEEEC
T ss_pred CCEEEEC
Confidence 5998864
No 75
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=98.22 E-value=1e-06 Score=68.78 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=58.6
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCCc--c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P~--a 192 (199)
..+++.++ .....+|||||||+|.++..++++. ..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|. .
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34556665 5566899999999999999999987 556 889997 7777777643 689999999986 5554 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 160 D~v~~~ 165 (254)
T 1xtp_A 160 DLIVIQ 165 (254)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999875
No 76
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=98.22 E-value=3.3e-07 Score=74.14 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=56.0
Q ss_pred CCCcceEEEecCCccHHHHHHH-HHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcc-cEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAA-DAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~a-D~~~l~ 198 (199)
.....+|||||||+|.++..++ ..+|..+ ++.+|. |..++.++++ +|++++.+|+.+ +++.. |++++.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN 194 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence 4556899999999999999996 7899999 999998 7788777642 569999999997 45543 999864
No 77
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=98.22 E-value=3.4e-06 Score=63.60 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=49.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC--CCCeeeeccchHHHhcCCCCCCceEEeCCCCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR--FICEGINFDLPEVVGEAPSILGVTHIGGDTFKS 188 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~ 188 (199)
.+.+.+..+....+|||||||+|.++..+++++| ..+ ++.+|+.+. ...++++++.+|+.+.
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~----~~~~~v~~~~~d~~~~ 75 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIM----DPIPNVYFIQGEIGKD 75 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCcc----CCCCCceEEEccccch
Confidence 4455555245568999999999999999999998 688 999998662 1246899999999863
No 78
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.21 E-value=7.2e-07 Score=72.92 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=53.9
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCc--ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPA--ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~--aD~~~l 197 (199)
.+|||||||.|.+++.+++.+|+.+ .+++|+ |.+++.+++ .+|++++.+|.++ ..+. -|+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence 4999999999999999999999999 999998 788888874 2799999999875 3443 399886
No 79
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=98.21 E-value=1.2e-06 Score=70.63 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=58.0
Q ss_pred HHHHHHhcc-chhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------
Q 037818 107 LMRKAMSGV-SVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------- 175 (199)
Q Consensus 107 ~f~~~m~~~-~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------- 175 (199)
.|...+... .......+++.++ .. ..+|||||||+|.++..++++ ..+ ++.+|+ |..++.+++.
T Consensus 58 ~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~ 132 (299)
T 3g2m_A 58 TYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADVR 132 (299)
T ss_dssp --------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhcccccc
Confidence 344444422 2333445666654 33 349999999999999999998 567 999998 7778877642
Q ss_pred CCceEEeCCCCC-CCCcc-cEEEe
Q 037818 176 LGVTHIGGDTFK-SIPAA-DAIFM 197 (199)
Q Consensus 176 ~ri~~~~gd~f~-~~P~a-D~~~l 197 (199)
.+|+++.+|+.+ +.+.. |++++
T Consensus 133 ~~v~~~~~d~~~~~~~~~fD~v~~ 156 (299)
T 3g2m_A 133 DRCTLVQGDMSAFALDKRFGTVVI 156 (299)
T ss_dssp TTEEEEECBTTBCCCSCCEEEEEE
T ss_pred cceEEEeCchhcCCcCCCcCEEEE
Confidence 689999999997 45554 98775
No 80
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=98.21 E-value=1.6e-06 Score=72.60 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=55.6
Q ss_pred CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC--------------CCceEEeCCCCC-------C
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI--------------LGVTHIGGDTFK-------S 188 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gd~f~-------~ 188 (199)
...+|||||||+|.++..+++.+ |..+ ++.+|+ |..++.++++ ++++++.+|+.+ +
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 45799999999999999999997 8889 999998 7777777643 699999999986 5
Q ss_pred CCc--ccEEEec
Q 037818 189 IPA--ADAIFMK 198 (199)
Q Consensus 189 ~P~--aD~~~l~ 198 (199)
+|. .|+|+..
T Consensus 162 ~~~~~fD~V~~~ 173 (383)
T 4fsd_A 162 VPDSSVDIVISN 173 (383)
T ss_dssp CCTTCEEEEEEE
T ss_pred CCCCCEEEEEEc
Confidence 665 3999864
No 81
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=98.20 E-value=9.6e-07 Score=69.41 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=53.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCC----CCCCC----c-ccE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDT----FKSIP----A-ADA 194 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~----f~~~P----~-aD~ 194 (199)
...+|||||||+|.++..+++++|..+ ++.+|. |..++.|+++ +|++++.+|. +++++ . .|+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 143 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence 456999999999999999999999999 999997 7888777642 5799999994 44555 2 499
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
++.+
T Consensus 144 i~~n 147 (254)
T 2h00_A 144 CMCN 147 (254)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8864
No 82
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=98.20 E-value=2.1e-06 Score=70.79 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=56.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-- 191 (199)
.+.+... .....+|||||||+|.++..++++ +..+ ++.+|..+.++.+++. ++|+++.+|+.+ ++|.
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 3444444 455679999999999999999987 4557 9999987677776642 789999999987 5663
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+++..
T Consensus 132 ~D~Ivs~ 138 (340)
T 2fyt_A 132 VDVIISE 138 (340)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 4999853
No 83
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=98.20 E-value=6e-07 Score=69.52 Aligned_cols=66 Identities=12% Similarity=0.159 Sum_probs=53.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCC----CCcc--cEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKS----IPAA--DAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~----~P~a--D~~~l~ 198 (199)
...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.+++ .++|+++.+|..+- +|.+ |.+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence 457999999999999999999999999 999997 666666553 26799999997652 5553 777653
No 84
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=98.20 E-value=6.9e-07 Score=69.55 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=56.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC----c-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP----A-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P----~-aD~~~ 196 (199)
..+..+|||||||+|..+..+++.+|..+ ++.+|. |..++.++++ ++|+++.+|..+.+| . .|+++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~ 147 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF 147 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence 34568999999999999999999999999 999998 7778777652 589999999987555 2 39988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 148 ~~ 149 (232)
T 3ntv_A 148 ID 149 (232)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 85
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=98.19 E-value=1.2e-06 Score=67.05 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc-ccEEE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA-ADAIF 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~-aD~~~ 196 (199)
.+++.+. .....+|||||||+|.++..++++ ..+ ++.+|. |..++.+++. ++++++.+|+.+ +.+. .|+++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 3444443 345579999999999999999998 567 899997 6777777653 489999999997 5554 49988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 112 ~~ 113 (220)
T 3hnr_A 112 ST 113 (220)
T ss_dssp EE
T ss_pred EC
Confidence 75
No 86
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=98.19 E-value=1e-06 Score=67.22 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=53.3
Q ss_pred hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------------------CCCceEEeCC
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------------------ILGVTHIGGD 184 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------------------~~ri~~~~gd 184 (199)
++.+. .....+|||||||+|..+..++++ ..+ ++.+|+ |..++.|++ ..+|+++.+|
T Consensus 15 ~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 15 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCe-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 34444 556689999999999999999997 457 999997 566766653 2589999999
Q ss_pred CCC-CCC--c-ccEEEe
Q 037818 185 TFK-SIP--A-ADAIFM 197 (199)
Q Consensus 185 ~f~-~~P--~-aD~~~l 197 (199)
+++ +.+ . -|+++.
T Consensus 91 ~~~l~~~~~~~fD~v~~ 107 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYD 107 (203)
T ss_dssp CSSSTHHHHHSEEEEEE
T ss_pred cccCCcccCCCEEEEEE
Confidence 997 443 2 398874
No 87
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=98.18 E-value=2e-06 Score=68.71 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=58.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..++++++. + ++.+|+ |..++.+++. ++++++.+|+.+ +|.
T Consensus 54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-N-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-E-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 35566666 666689999999999999999988765 7 999998 6777766542 589999999964 444
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+|+..
T Consensus 130 fD~v~~~ 136 (287)
T 1kpg_A 130 VDRIVSI 136 (287)
T ss_dssp CSEEEEE
T ss_pred eeEEEEe
Confidence 4998864
No 88
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=98.18 E-value=2.3e-06 Score=64.15 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=56.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA- 192 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a- 192 (199)
.+.+.++ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. ++++++.+|+.+ +.+..
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 4555555 555679999999999999999988 567 999998 7777777642 479999999986 44443
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 99 D~v~~~ 104 (199)
T 2xvm_A 99 DFILST 104 (199)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 998864
No 89
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=98.18 E-value=2.7e-06 Score=63.25 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C--CceEEeCCCCCCCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L--GVTHIGGDTFKSIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~--ri~~~~gd~f~~~P~ 191 (199)
..+++.++ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.++++ + |++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34556665 566689999999999999999988 667 999997 7777776642 3 599999999986554
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|++++.
T Consensus 118 ~~~D~v~~~ 126 (194)
T 1dus_A 118 RKYNKIITN 126 (194)
T ss_dssp SCEEEEEEC
T ss_pred CCceEEEEC
Confidence 3998864
No 90
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=98.17 E-value=9.8e-07 Score=69.90 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=57.6
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchH-------HHhcCCCC-------CCceEEeCC-C
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPE-------VVGEAPSI-------LGVTHIGGD-T 185 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~-------v~~~a~~~-------~ri~~~~gd-~ 185 (199)
.+++.++ .....+|||||||+|.++..+++++ |+.+ ++.+|+.+ .++.+++. ++|+++.+| +
T Consensus 34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 4556665 6667899999999999999999996 8889 99999854 56666532 689999998 6
Q ss_pred CC-C--CCc--ccEEEec
Q 037818 186 FK-S--IPA--ADAIFMK 198 (199)
Q Consensus 186 f~-~--~P~--aD~~~l~ 198 (199)
+. . +|. .|++++.
T Consensus 112 ~~~~~~~~~~~fD~v~~~ 129 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLA 129 (275)
T ss_dssp TTCCGGGTTCCCSEEEEE
T ss_pred hhccCCCCCCCEEEEEEc
Confidence 53 2 343 3998864
No 91
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.16 E-value=1.7e-06 Score=64.48 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=56.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEE
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIF 196 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~ 196 (199)
.++..+ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|. .|+++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEE
Confidence 344544 245679999999999999999988 457 889997 7777777653 789999999997 5654 39988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 113 ~~ 114 (195)
T 3cgg_A 113 SA 114 (195)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 92
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=98.16 E-value=2.1e-06 Score=68.10 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------C---CCceEEeCCCCCC--------CC
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------I---LGVTHIGGDTFKS--------IP 190 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~---~ri~~~~gd~f~~--------~P 190 (199)
.....+|||||||+|.++..+++++|..+ ++.+|+ |..++.+++ + +|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 112 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP 112 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence 44557999999999999999999999999 999998 666666543 2 3799999999875 33
Q ss_pred c--ccEEEec
Q 037818 191 A--ADAIFMK 198 (199)
Q Consensus 191 ~--aD~~~l~ 198 (199)
. .|+|+++
T Consensus 113 ~~~fD~Vv~n 122 (260)
T 2ozv_A 113 DEHFHHVIMN 122 (260)
T ss_dssp TTCEEEEEEC
T ss_pred CCCcCEEEEC
Confidence 3 3999874
No 93
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=98.15 E-value=1.3e-06 Score=69.65 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=55.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-C-CCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-S-IPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~-~P~ 191 (199)
.+++.++ .. ..+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. ++++++.+|+.+ + ++.
T Consensus 60 ~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC-SS-CCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC-CC-CCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 4455554 33 479999999999999999998 667 999998 7777777642 689999999987 3 344
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|++.
T Consensus 135 ~~fD~v~~~ 143 (285)
T 4htf_A 135 TPVDLILFH 143 (285)
T ss_dssp SCEEEEEEE
T ss_pred CCceEEEEC
Confidence 3999875
No 94
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=98.15 E-value=9.4e-06 Score=62.85 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=54.3
Q ss_pred hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc----CCCCCCceEEeCCCCCC-----CCc-c
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE----APSILGVTHIGGDTFKS-----IPA-A 192 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~----a~~~~ri~~~~gd~f~~-----~P~-a 192 (199)
++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++. ++..++++++.+|+.++ ++. .
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence 34444 56668999999999999999999999777 999997 555544 34458899999999862 233 3
Q ss_pred cEEE
Q 037818 193 DAIF 196 (199)
Q Consensus 193 D~~~ 196 (199)
|+++
T Consensus 145 D~v~ 148 (230)
T 1fbn_A 145 DVIY 148 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 95
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=98.15 E-value=2.6e-06 Score=66.61 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=52.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------------CCCCceEEeCCCCCC----CCcc-
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------------SILGVTHIGGDTFKS----IPAA- 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------------~~~ri~~~~gd~f~~----~P~a- 192 (199)
.+..+|||||||+|.++..+++.+|+.. ++.+|. +..++.|+ ..++|+++.+|..+. +|.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3457999999999999999999999999 999998 55655442 237899999999863 4443
Q ss_pred -cEEEe
Q 037818 193 -DAIFM 197 (199)
Q Consensus 193 -D~~~l 197 (199)
|.+++
T Consensus 124 ~D~v~~ 129 (235)
T 3ckk_A 124 LTKMFF 129 (235)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 87765
No 96
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.14 E-value=1.5e-06 Score=65.65 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=52.5
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..++++ ..+ ++.+|. |..++.+++ .++++++.+|+.+ ++|. .|++++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEeh
Confidence 479999999999999999998 557 899997 777887776 4799999999987 5554 3998874
No 97
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=98.14 E-value=1.8e-06 Score=69.86 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=53.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCCC--c--ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSIP--A--ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~P--~--aD~ 194 (199)
.+.++|||||||+|..++.+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|.++.++ . -|+
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDv 160 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCE-EEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccE
Confidence 3568999999999999999999877788 999997 778877753 2699999999987432 2 399
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|+.
T Consensus 161 Ii~ 163 (294)
T 3adn_A 161 IIS 163 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 98
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=98.13 E-value=4.5e-06 Score=64.63 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. .+++++.+|+.+ ++|. .|++++.
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 123 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAI 123 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEc
Confidence 34579999999999999999998 557 899997 7777777654 789999999997 5655 3998864
No 99
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.13 E-value=2.7e-06 Score=70.35 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=62.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIP 190 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P 190 (199)
+..++.... |....+|+|+|||+|.++.+++... |+.+ ++.+|. |..++.|+++ ++|+++.+|+.+ +.|
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 345556666 8888899999999999999999998 9999 999998 7888877753 489999999997 333
Q ss_pred c--ccEEEe
Q 037818 191 A--ADAIFM 197 (199)
Q Consensus 191 ~--aD~~~l 197 (199)
. .|+++.
T Consensus 270 ~~~~D~Ii~ 278 (354)
T 3tma_A 270 FPEVDRILA 278 (354)
T ss_dssp CCCCSEEEE
T ss_pred cCCCCEEEE
Confidence 3 388886
No 100
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=98.12 E-value=4.1e-06 Score=66.55 Aligned_cols=94 Identities=11% Similarity=0.057 Sum_probs=67.9
Q ss_pred CchhHHHHHHHHhccchh----hHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC
Q 037818 101 MPEMNGLMRKAMSGVSVP----FITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 101 ~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
.|... .|...|...... ....++..++ .....+|||||||+|.++..+++. .|..+ ++.+|. |..++.+++
T Consensus 66 ~p~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~ 142 (280)
T 1i9g_A 66 RPLLV-DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARR 142 (280)
T ss_dssp CCCHH-HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHH
T ss_pred CCCHH-HHHhhccccceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHH
Confidence 44443 344555443332 2335666666 667789999999999999999996 68889 999998 777776653
Q ss_pred ---------CCCceEEeCCCCC-CCCc--ccEEEe
Q 037818 175 ---------ILGVTHIGGDTFK-SIPA--ADAIFM 197 (199)
Q Consensus 175 ---------~~ri~~~~gd~f~-~~P~--aD~~~l 197 (199)
.++++++.+|+.+ +++. .|++++
T Consensus 143 ~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~ 177 (280)
T 1i9g_A 143 NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177 (280)
T ss_dssp HHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred HHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence 2589999999987 4544 399886
No 101
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=98.12 E-value=3.2e-06 Score=64.52 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-c-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP-A- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P-~- 191 (199)
.+++.+. .....+|||||||+|.++..+++.. |+.+ ++.+|. |..++.+++. +++++..+|+..++| .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 4445555 5566899999999999999999998 7788 999997 6777777642 679999999977655 2
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|+++..
T Consensus 146 ~fD~v~~~ 153 (215)
T 2yxe_A 146 PYDRIYTT 153 (215)
T ss_dssp CEEEEEES
T ss_pred CeeEEEEC
Confidence 3998864
No 102
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=98.11 E-value=3.1e-06 Score=64.16 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=53.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
....+|||||||+|.++..+++..+. + ++.+|. |..++.+++ .+++++..+|+.+ +++. .|+++.+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~ 114 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEK 114 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEEC
Confidence 44579999999999999999999776 7 999997 667766654 2689999999987 5654 3999853
No 103
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=98.11 E-value=2.9e-06 Score=65.84 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=55.3
Q ss_pred hCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccch-H----HHhcCCCCCCceEEeCCCCCC--CC--c--cc
Q 037818 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLP-E----VVGEAPSILGVTHIGGDTFKS--IP--A--AD 193 (199)
Q Consensus 126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp-~----v~~~a~~~~ri~~~~gd~f~~--~P--~--aD 193 (199)
.++ .....+|||||||+|.++..+++.+ |..+ ++.+|.. . .++.++.+++++++.+|+.++ +| . .|
T Consensus 72 ~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 72 QIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred eec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEE
Confidence 344 5566899999999999999999997 7888 9999984 2 455555568999999999873 32 2 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 150 ~V~~~ 154 (233)
T 2ipx_A 150 VIFAD 154 (233)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98863
No 104
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=98.11 E-value=2e-06 Score=66.64 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=51.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+++.++ + ++.+|. |..++.+++. .+++++.+|+.+..|. .|+|++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 110 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLT 110 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEh
Confidence 446899999999999999999987 6 778897 6667766643 2899999999875444 3999875
No 105
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=98.11 E-value=4e-06 Score=63.54 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCcc-cEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPAA-DAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~a-D~~~l~ 198 (199)
....+|||||||+|.++..+++ .|..+ ++.+|. |..++.++++ +++++..+|+++..+.. |+++..
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~ 132 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVAN 132 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEEC
Confidence 3457999999999999999776 57778 999998 7777777652 34999999998865554 998864
No 106
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=98.10 E-value=4.2e-06 Score=65.33 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=55.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-c
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-D 193 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D 193 (199)
.++.... .....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. .+++++.+|+.+ +.+.. |
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 3444443 345579999999999999999987 567 999998 7777777642 479999999987 45543 9
Q ss_pred EEEe
Q 037818 194 AIFM 197 (199)
Q Consensus 194 ~~~l 197 (199)
++++
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 107
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=98.10 E-value=2.8e-06 Score=70.29 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=53.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..++++ +..+ ++.+|..+.++.|++. ++|+++.+|+.+ ++|. .|+++..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~ 140 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE 140 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred CCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence 4479999999999999999988 6667 9999998777776642 679999999997 6774 3999863
No 108
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=98.10 E-value=6.9e-07 Score=65.68 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=55.1
Q ss_pred hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEec
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
++.++ .....+|||||||+|.++..+++++. + ++.+|. |..++.+++ .+++++..+| .++|. .|++++.
T Consensus 10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 34444 56668999999999999999999984 7 899997 777777766 4899999999 44554 3998865
No 109
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=98.10 E-value=3.3e-06 Score=65.38 Aligned_cols=62 Identities=23% Similarity=0.260 Sum_probs=51.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~ 198 (199)
..+|||||||+|.++..+++. .+ ++.+|. |..++.+++. .+++++.+|+.+ +.|.. |++++.
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 103 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITIL 103 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEEC
T ss_pred CCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEe
Confidence 479999999999999999987 67 999998 7777777653 689999999986 45553 998863
No 110
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=98.10 E-value=5.2e-06 Score=65.03 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC--------------CCCCceEEeCCCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP--------------SILGVTHIGGDTFKSI 189 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~--------------~~~ri~~~~gd~f~~~ 189 (199)
....+|||||||+|.++..+++.+|+.+ ++.+|. +..++.++ ..++++++.+|.++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l 120 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL 120 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHH
Confidence 3557999999999999999999999999 999996 66665543 2368999999998743
No 111
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=98.09 E-value=2.7e-06 Score=65.68 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=52.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCcc-cEEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPAA-DAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~a-D~~~ 196 (199)
....+|||||||+|.++..+++.++ + ++.+|. |..++.+++. ++++++.+|+.+ +.+.. |+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~ 105 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV 105 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence 4457999999999999999999988 6 889998 7888887764 789999999987 44444 9988
No 112
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=98.08 E-value=5.4e-06 Score=62.99 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=57.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc---
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--- 191 (199)
.+++.++ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.++++ ++++++.+|.++..+.
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 4455565 666789999999999999999998 566 889998 7777777642 6899999999975433
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 144 ~D~i~~~ 150 (210)
T 3lbf_A 144 FDAIIVT 150 (210)
T ss_dssp EEEEEES
T ss_pred ccEEEEc
Confidence 3998874
No 113
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=98.08 E-value=1.7e-06 Score=67.55 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=54.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CC----Cc-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SI----PA-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~----P~-aD~~~ 196 (199)
+....+|||||||+|.++..+++..|+.+ ++.+|. |..++.++++ ++|+++.+|+.+ +. +. .|+++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence 45668999999999999999999999999 999998 6677776642 579999999875 33 23 39988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
..
T Consensus 147 ~~ 148 (240)
T 1xdz_A 147 AR 148 (240)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 114
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=98.07 E-value=3.3e-06 Score=65.23 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=52.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCC--CC-c--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKS--IP-A--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~--~P-~--aD~~~l~ 198 (199)
....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++ .++++++.+|+.+. ++ . .|+|+.+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence 34479999999999999999998 567 999998 777887776 47899999999864 44 3 3988763
No 115
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=98.07 E-value=3.5e-06 Score=65.63 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=51.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCc-------ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPA-------ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~-------aD~~~l~ 198 (199)
....+|||||||+|.++..+++..+ + ++.+|. |..++.+++ ..+++++.+|+.+ +.+. .|++++.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 4557999999999999999999999 7 889997 677777764 3589999999997 2222 3787764
No 116
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=98.06 E-value=3.8e-06 Score=64.07 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCCCCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.....+|||||||+|.++..+++... + ++.+|. |..++.+++ .++++++.+|+.+..|. .|++++.
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 121 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHCK--R-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVA 121 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGEE--E-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEE
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEc
Confidence 45668999999999999999999863 6 889998 666766654 36899999999974344 3999875
No 117
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=98.06 E-value=9.8e-07 Score=69.46 Aligned_cols=68 Identities=16% Similarity=0.165 Sum_probs=55.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc---ccE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA---ADA 194 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~---aD~ 194 (199)
..+..+|||||||+|..+..+++.+| ..+ ++.+|. |..++.++++ +||+++.+|..+. ++. .|+
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence 34568999999999999999999999 788 999998 7778777642 5899999998752 322 499
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 140 V~~d 143 (248)
T 3tfw_A 140 IFID 143 (248)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8863
No 118
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.06 E-value=3.1e-06 Score=66.87 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred CC-CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc--ccEE
Q 037818 130 FK-GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA--ADAI 195 (199)
Q Consensus 130 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~--aD~~ 195 (199)
.. ...+|||||||+|.++..++++.+. + ++.+|+ |..++.++++ +|++++.+|+.+. ++. .|++
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I 123 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV 123 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence 55 6689999999999999999999887 7 999998 6777777652 5899999999873 333 3999
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
+.+
T Consensus 124 i~n 126 (259)
T 3lpm_A 124 TCN 126 (259)
T ss_dssp EEC
T ss_pred EEC
Confidence 873
No 119
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=98.05 E-value=3.6e-06 Score=68.13 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
.....+|||||||+|.++..++.+.|..+ ++.+|. |+.++.|+++ +||+++.+|..+ +|. .|++++.
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~ 195 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVA 195 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEEC
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEEC
Confidence 56678999999999988877777889999 999998 8888888753 799999999987 343 4999864
No 120
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.05 E-value=4.6e-06 Score=67.09 Aligned_cols=73 Identities=22% Similarity=0.376 Sum_probs=56.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~ 191 (199)
..+++.++ .....+|||||||+|.++..++++.. + ++.+|. |..++.+++. ++++++.+|+.+ ++|.
T Consensus 18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 45566666 66668999999999999999999864 6 788887 5666655431 589999999997 6776
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|+++.
T Consensus 94 fD~vv~ 99 (285)
T 1zq9_A 94 FDTCVA 99 (285)
T ss_dssp CSEEEE
T ss_pred hcEEEE
Confidence 688775
No 121
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.04 E-value=3.8e-06 Score=63.49 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=53.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc-ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
....+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++ .+++++.+|+.+ +|. .|++++.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~ 117 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN 117 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEEC
Confidence 44579999999999999999987 5556 999998 7888877754 489999999987 454 4998874
No 122
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=98.04 E-value=6e-06 Score=66.93 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=58.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA- 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~- 191 (199)
..+++.++ .....+|||||||+|.++..+++.+ ..+ ++.+|+ |..++.+++. ++++++.+|+.+ +|.
T Consensus 80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 45666666 6667899999999999999999987 568 999998 7777776642 679999999865 344
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|+++..
T Consensus 156 fD~v~~~ 162 (318)
T 2fk8_A 156 VDRIVSI 162 (318)
T ss_dssp CSEEEEE
T ss_pred cCEEEEe
Confidence 4988864
No 123
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=98.03 E-value=1e-05 Score=61.77 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=55.3
Q ss_pred hhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc-
Q 037818 117 VPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA- 191 (199)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~- 191 (199)
......+++.++ ....+|||||||+|.++..+++. + .+ ++.+|. |..++.+++.- .++..+|+.+ +++.
T Consensus 19 ~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~ 92 (230)
T 3cc8_A 19 NAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEE 92 (230)
T ss_dssp -CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTT
T ss_pred HHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCC
Confidence 333345666554 45579999999999999999998 5 77 999998 67777776542 3788899875 3443
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|++++.
T Consensus 93 ~fD~v~~~ 100 (230)
T 3cc8_A 93 QFDCVIFG 100 (230)
T ss_dssp CEEEEEEE
T ss_pred ccCEEEEC
Confidence 3998864
No 124
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.03 E-value=5.4e-06 Score=65.16 Aligned_cols=67 Identities=7% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~ 191 (199)
..+++..+ .....+|||||||+|.++..++++. .+ ++.+|. |..++.+++ .++++++.+|+.+ ++|.
T Consensus 20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence 45666666 6666899999999999999999997 56 889997 566665543 3789999999987 5664
No 125
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=98.03 E-value=3e-06 Score=65.62 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=53.3
Q ss_pred hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--cc
Q 037818 124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--AD 193 (199)
Q Consensus 124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD 193 (199)
+.... +.. .+|||||||+|.++..+++ +..+ ++.+|. |..++.+++. ++++++.+|+.+..|. .|
T Consensus 60 ~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 134 (235)
T 3lcc_A 60 VDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD 134 (235)
T ss_dssp HHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred HHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence 33343 444 5999999999999999976 6677 899998 7777776642 5699999999984444 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+++..
T Consensus 135 ~v~~~ 139 (235)
T 3lcc_A 135 LIFDY 139 (235)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 98864
No 126
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=98.03 E-value=8.8e-06 Score=62.45 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=52.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-----HHhcCCCCCCceEEeCCCCCC-----CCc-ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-----VVGEAPSILGVTHIGGDTFKS-----IPA-ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-----v~~~a~~~~ri~~~~gd~f~~-----~P~-aD~~~l~ 198 (199)
.....+|||||||+|.++..+++..|.-+ ++.+|..+ .++.++...++.++.+|..++ ++. .|+++..
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence 45567999999999999999999998667 99999853 344555457899999998763 233 3988753
No 127
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=98.03 E-value=1.1e-06 Score=67.68 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=54.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC-------c-cc
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP-------A-AD 193 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P-------~-aD 193 (199)
.+..+|||||||+|..+..+++++| +.+ ++.+|. |..++.++++ +||+++.+|..+.+| . .|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 4457999999999999999999999 788 999997 7777777642 579999999976322 2 48
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 136 ~v~~d 140 (223)
T 3duw_A 136 FIFID 140 (223)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88863
No 128
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=98.02 E-value=6e-06 Score=68.24 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=56.4
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-c
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-A 192 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-a 192 (199)
.+.+.+. .....+|||||||+|.++..++++ +..+ ++.+|..+.++.+++. ++|+++.+|+.+ +.|. .
T Consensus 41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 4455554 445579999999999999998885 6667 9999987666665531 789999999987 5665 4
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 118 D~Ivs~ 123 (348)
T 2y1w_A 118 DIIISE 123 (348)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 998864
No 129
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=98.02 E-value=1.4e-05 Score=61.57 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=53.7
Q ss_pred hhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHH----hcCCCCCCceEEeCCCCCC-----CCc-c
Q 037818 125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVV----GEAPSILGVTHIGGDTFKS-----IPA-A 192 (199)
Q Consensus 125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~----~~a~~~~ri~~~~gd~f~~-----~P~-a 192 (199)
+.++ .....+|||+|||+|.++..+++.. |..+ ++.+|. |..+ +.++..++++++.+|+.+. ++. .
T Consensus 67 ~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 67 KNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCc
Confidence 3343 5566799999999999999999985 6678 999997 4333 3444458999999999872 233 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 145 D~v~~~ 150 (227)
T 1g8a_A 145 DVIFED 150 (227)
T ss_dssp EEEEEC
T ss_pred eEEEEC
Confidence 988863
No 130
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=98.01 E-value=1.5e-06 Score=64.41 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=52.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~ 198 (199)
....+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++ ++++++.+|+.+. .+. .|++++.
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~ 107 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 107 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence 34579999999999999999987 6678 999998 7777777642 5799999999863 223 4988864
No 131
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=98.01 E-value=1.2e-06 Score=68.55 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=50.0
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC---CCCcc--cEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK---SIPAA--DAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~---~~P~a--D~~~l 197 (199)
....+|||||||.|..+..+++..|. + .|++|+ |.+++.|++. .+++++.+|..+ ++|.. |.+++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~ 134 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence 34579999999999999999998885 6 888997 8888888752 568888888643 45552 76653
No 132
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=98.00 E-value=2.7e-06 Score=67.17 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CC----Cc-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SI----PA-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~----P~-aD~~~ 196 (199)
.....+|+|||||+|..+..++..+|+.+ ++.+|. +..++.++++ ++|+++.+|..+ +. +. .|+++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 45568999999999999999999999999 999996 6777776642 569999999875 22 13 39887
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
.+
T Consensus 157 s~ 158 (249)
T 3g89_A 157 AR 158 (249)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 133
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=98.00 E-value=4.4e-06 Score=63.55 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc-ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
.....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++.-++++..+|+.+ +.+. .|++++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 109 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAH 109 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEEC
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEec
Confidence 344579999999999999999988 557 899998 7778877765578899999886 4222 3998875
No 134
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=98.00 E-value=3.4e-06 Score=65.33 Aligned_cols=67 Identities=13% Similarity=0.134 Sum_probs=54.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC-----Cc-ccEEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI-----PA-ADAIF 196 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~-----P~-aD~~~ 196 (199)
....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++ ++|+++.+|+.+.+ +. .|+++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 3457999999999999999999999888 999998 7777777642 58999999998732 23 39888
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 132 ~~ 133 (233)
T 2gpy_A 132 ID 133 (233)
T ss_dssp EE
T ss_pred EC
Confidence 64
No 135
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=98.00 E-value=4.9e-06 Score=61.97 Aligned_cols=66 Identities=12% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC--CCC-c-ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK--SIP-A-ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~--~~P-~-aD~~~l~ 198 (199)
.....+|||||||+|.++..++++ ..+ ++.+|. |..++.++++ ++++++.+|+.+ +++ . .|++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~ 96 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN 96 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence 355689999999999999999988 677 999997 7777777652 789999977654 233 3 3888754
No 136
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=97.98 E-value=8.9e-06 Score=61.54 Aligned_cols=61 Identities=28% Similarity=0.389 Sum_probs=48.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS 188 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~ 188 (199)
..+.+.|..+....+|||+|||+|.++..++++ ..+ ++.+|+-+. ...++++++.+|+.+.
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~ 74 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCH
Confidence 355566654566789999999999999999988 667 899998542 2347899999999873
No 137
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.98 E-value=3.9e-06 Score=63.12 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=53.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-C-CC-c-ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-S-IP-A-ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~-~P-~-aD~~~ 196 (199)
.....+|||+|||+|.++..+++++ |..+ ++.+|. |..++.++++ ++++++.+|+.+ + .+ . .|+++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM 98 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence 3445799999999999999999986 7778 999998 6777777653 689999999865 2 33 3 38887
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 99 ~~ 100 (197)
T 3eey_A 99 FN 100 (197)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 138
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=97.97 E-value=4.7e-06 Score=66.72 Aligned_cols=66 Identities=23% Similarity=0.284 Sum_probs=53.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Ccc-cEEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PAA-DAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~a-D~~~ 196 (199)
+.++|||||||+|.+++++++..|..+ ++.+|+ |.+++.+++ .+|++++.+|.++.+ +.. |+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 458999999999999999998877788 999998 788877653 379999999988632 233 9988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 154 ~d 155 (275)
T 1iy9_A 154 VD 155 (275)
T ss_dssp ES
T ss_pred EC
Confidence 63
No 139
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.97 E-value=3e-06 Score=62.94 Aligned_cols=67 Identities=7% Similarity=-0.018 Sum_probs=52.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADA 194 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~ 194 (199)
.....+|||+|||+|.++..+++ .+..+ ++.+|. |..++.++++ ++++++.+|+.+.. +. .|+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~ 119 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL 119 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence 34457999999999999999887 56677 999998 7788877752 57999999998732 23 398
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 120 i~~~ 123 (187)
T 2fhp_A 120 VLLD 123 (187)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8864
No 140
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.96 E-value=1.7e-06 Score=66.52 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=53.4
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--------c-c
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--------A-A 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--------~-a 192 (199)
....+|||||||+|..+..+++.+| ..+ .+.+|. |..++.++++ ++|+++.+|..+.+| . .
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 3457999999999999999999998 778 999998 6777776642 679999999975321 3 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 142 D~v~~~ 147 (225)
T 3tr6_A 142 DLIYID 147 (225)
T ss_dssp EEEEEC
T ss_pred cEEEEC
Confidence 888864
No 141
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=97.96 E-value=1.1e-05 Score=65.27 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--a 192 (199)
..+++..+ .....+|||||||+|.++..++++ ..+ ++.+|. |..++.+++ .++++++.+|+.+ ++|. .
T Consensus 40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 45666666 666689999999999999999998 355 888887 555666554 3799999999997 6766 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++.+
T Consensus 116 D~Iv~N 121 (295)
T 3gru_A 116 NKVVAN 121 (295)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 887753
No 142
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=97.96 E-value=2e-05 Score=61.23 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=58.0
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC-Cc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI-PA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~-P~ 191 (199)
..++...+ .....+|||+|||+|.++..++++ ..+ ++.+|. |..++.++++ +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 34555665 666689999999999999999999 667 999996 6777776642 68999999999865 54
Q ss_pred --ccEEEe
Q 037818 192 --ADAIFM 197 (199)
Q Consensus 192 --aD~~~l 197 (199)
.|++++
T Consensus 157 ~~~D~v~~ 164 (248)
T 2yvl_A 157 GIFHAAFV 164 (248)
T ss_dssp TCBSEEEE
T ss_pred CcccEEEE
Confidence 499886
No 143
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=97.96 E-value=1.1e-05 Score=63.11 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=52.4
Q ss_pred cceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCC--CC---c--ccEEEe
Q 037818 133 VKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKS--IP---A--ADAIFM 197 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~--~P---~--aD~~~l 197 (199)
..+|||||||+|..+..+++. +|..+ ++.+|. |..++.++. .++|+++.||..+. +| . -|++++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 469999999999999999998 78999 999998 666777764 37899999999873 22 2 388875
No 144
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=97.96 E-value=1e-05 Score=62.08 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=51.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~ 195 (199)
....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. +++++..+|+.+ +++. .|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 34579999999999999999998 567 999998 6666666531 368999999987 5555 3998
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
++.
T Consensus 106 ~~~ 108 (235)
T 3sm3_A 106 VMQ 108 (235)
T ss_dssp EEE
T ss_pred EEc
Confidence 864
No 145
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.96 E-value=5.9e-06 Score=66.14 Aligned_cols=66 Identities=18% Similarity=0.003 Sum_probs=54.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
....+|||+|||+|.++..+++..+. + ++.+|. |..++.++++ ++++++.+|.++..+. .|++++.
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~ 199 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence 34579999999999999999999988 7 999998 6777777642 5799999999985433 4998874
No 146
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=97.96 E-value=6.6e-06 Score=64.96 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l 197 (199)
....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++. +++.+..+|+.+ +++. .|+++.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~ 154 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR 154 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence 3457999999999999999999999888 999998 6777777653 789999999976 5554 398875
No 147
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=97.96 E-value=4.8e-06 Score=68.25 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=52.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..++++ +..+ ++.+|..+.++.+++. ++|+++.+|+.+ ++|. .|+++..
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~ 112 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE 112 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEe
Confidence 3479999999999999998886 5557 9999987677766542 689999999987 5663 4998854
No 148
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=97.95 E-value=8.7e-06 Score=67.99 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=56.0
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-c
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-A 192 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-a 192 (199)
.+.+... .....+|||||||+|.++..++++. ..+ ++.+|....++.+++. ++|+++.+|+.+ ++|. .
T Consensus 54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 130 (376)
T 3r0q_C 54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV 130 (376)
T ss_dssp HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence 3444444 4556899999999999999999883 336 9999988666666542 679999999987 5665 4
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|+++..
T Consensus 131 D~Iv~~ 136 (376)
T 3r0q_C 131 DVIISE 136 (376)
T ss_dssp EEEEEC
T ss_pred eEEEEc
Confidence 998863
No 149
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=97.94 E-value=7.6e-06 Score=63.28 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=51.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~ 198 (199)
...+|||||||+|.++..+++.. .+ ++.+|. |..++.+++. .+++++.+|+.+ +.+.. |++++.
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 108 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCC 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--Cc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEc
Confidence 45799999999999999999984 56 889998 7777777653 289999999986 45543 999875
No 150
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=97.94 E-value=1.1e-05 Score=66.15 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=57.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC-----------------CCCceEE
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS-----------------ILGVTHI 181 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~-----------------~~ri~~~ 181 (199)
..++..++ .....+|||||||+|.++..+++. .|+.+ ++.+|. |..++.|++ .+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34555555 666689999999999999999998 58889 999998 666666654 2589999
Q ss_pred eCCCCCC---CCc--ccEEEec
Q 037818 182 GGDTFKS---IPA--ADAIFMK 198 (199)
Q Consensus 182 ~gd~f~~---~P~--aD~~~l~ 198 (199)
.+|+.+. ++. .|++++.
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~ 194 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALD 194 (336)
T ss_dssp ESCTTCCC-------EEEEEEC
T ss_pred ECChHHcccccCCCCeeEEEEC
Confidence 9999873 444 3998863
No 151
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=97.94 E-value=1.3e-05 Score=63.36 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=53.4
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~ 191 (199)
..+++..+ .....+|+|||||+|.++..++++ +..+ ++.+|+ |..++.++++ ++++++.+|+.+ ++|.
T Consensus 21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 45566666 666689999999999999999987 5567 899997 5666666654 689999999997 5554
No 152
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=97.94 E-value=1.9e-06 Score=65.37 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
....+|+|||||+|-++..+....|+.+ .+.+|. +..++.++++ .++++ .|..+..|. .|++++-
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~ 122 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLL 122 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHh
Confidence 3467999999999999999999999998 999997 6777777653 25666 777764443 4998763
No 153
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=97.94 E-value=2.5e-06 Score=65.70 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC---CCC-----c-c
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK---SIP-----A-A 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~---~~P-----~-a 192 (199)
.+..+|||||||+|..+..++++.| +.+ ++.+|. |..++.++++ +||+++.+|..+ .++ . .
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3457999999999999999999875 778 999998 7778877752 589999999854 233 2 4
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 136 D~V~~d 141 (221)
T 3u81_A 136 DMVFLD 141 (221)
T ss_dssp SEEEEC
T ss_pred EEEEEc
Confidence 998864
No 154
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=97.93 E-value=6e-06 Score=64.72 Aligned_cols=50 Identities=20% Similarity=0.089 Sum_probs=40.0
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHH--CCCCCeeeeccc-hHHHhcCCC
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
+++.++ -....+|+|+|||+|.++..+++. +|..+ ++.+|. |..++.|++
T Consensus 43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~ 95 (250)
T 1o9g_A 43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAK 95 (250)
T ss_dssp HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHH
T ss_pred HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHH
Confidence 334433 234579999999999999999998 88888 999998 788877764
No 155
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=97.93 E-value=4.6e-06 Score=61.91 Aligned_cols=72 Identities=18% Similarity=0.123 Sum_probs=55.9
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---c
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---A 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---~ 191 (199)
+++.++ .....+|||+|||+|.++..+++.. .+ ++.+|. |..++.++++ +++++..+|+.+++| .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 334444 5566899999999999999999988 67 999998 7777777642 689999999876444 2
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
.|++++.
T Consensus 101 ~D~v~~~ 107 (192)
T 1l3i_A 101 IDIAVVG 107 (192)
T ss_dssp EEEEEES
T ss_pred CCEEEEC
Confidence 4988864
No 156
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=97.91 E-value=2.4e-05 Score=57.01 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=54.1
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-C--------CCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-S--------IPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~--------~P~ 191 (199)
.+.+.+.......+|||||||+|.++..+++.+ |+.+ ++.+|..+ .. +.+++++..+|+.+ + +|.
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~-~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLP-MD---PIVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSC-CC---CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECcc-cc---ccCcEEEEEcccccchhhhhhhccCCC
Confidence 344444323455799999999999999999995 7788 99999876 22 23789999999987 3 554
Q ss_pred --ccEEEe
Q 037818 192 --ADAIFM 197 (199)
Q Consensus 192 --aD~~~l 197 (199)
.|+++.
T Consensus 87 ~~~D~i~~ 94 (180)
T 1ej0_A 87 SKVQVVMS 94 (180)
T ss_dssp CCEEEEEE
T ss_pred CceeEEEE
Confidence 398886
No 157
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.91 E-value=1.9e-05 Score=67.13 Aligned_cols=76 Identities=14% Similarity=0.315 Sum_probs=56.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcC-------CC--------CCCceEEeCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEA-------PS--------ILGVTHIGGD 184 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a-------~~--------~~ri~~~~gd 184 (199)
..+++.++ .....+|||||||+|.++..+++.+|..+ ++.+|+ |..++.| ++ .++|+++.+|
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 34556665 66778999999999999999999999888 999998 4445555 32 2689999875
Q ss_pred CC-CC--C----CcccEEEec
Q 037818 185 TF-KS--I----PAADAIFMK 198 (199)
Q Consensus 185 ~f-~~--~----P~aD~~~l~ 198 (199)
-+ .+ + ...|+|++.
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn 330 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVN 330 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEEC
T ss_pred ccccccccccccCCCCEEEEe
Confidence 44 32 2 225999874
No 158
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.91 E-value=6.7e-06 Score=68.62 Aligned_cols=68 Identities=15% Similarity=-0.025 Sum_probs=56.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
|....+|+|+|||+|.++..+++..+..+ ++.+|. |..++.|+++ ++|+++.+|+.+ +.|. .|+++.+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence 55668999999999999999999999878 999997 7778877753 589999999997 5543 3998873
No 159
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=97.90 E-value=7.4e-06 Score=65.37 Aligned_cols=68 Identities=15% Similarity=0.019 Sum_probs=56.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-CCc-ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-IPA-ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-~P~-aD~~~l~ 198 (199)
+....+|+|+|||+|.++..++++.+..+ ++.+|. |..++.++++ ++++++.+|.++. .+. .|++++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d 193 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMG 193 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEEC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEEC
Confidence 45568999999999999999999999888 999998 7888877752 5789999999875 222 4998874
No 160
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=97.90 E-value=9.7e-06 Score=62.93 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=45.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHH-hc---CCCC------CCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVV-GE---APSI------LGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~-~~---a~~~------~ri~~~~gd~f~ 187 (199)
....+|||||||+|.++..+++++|..+ ++.+|+- +.+ +. |++. ++++++.+|..+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~ 89 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES 89 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence 3457999999999999999999999999 9999985 444 33 3542 679999999865
No 161
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=97.90 E-value=2.2e-05 Score=66.02 Aligned_cols=72 Identities=14% Similarity=0.092 Sum_probs=55.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEe
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
.+++.++ .....+|+|+|||+|.++..+++++ +..+ ++.+|+ |..++.| .+++++.+|+++..+. .|+++.
T Consensus 30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3444444 3344699999999999999999988 6778 999998 5666666 7899999999985443 399987
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
+
T Consensus 105 N 105 (421)
T 2ih2_A 105 N 105 (421)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.90 E-value=1.4e-05 Score=67.17 Aligned_cols=77 Identities=8% Similarity=-0.082 Sum_probs=60.0
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI 161 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~ 161 (199)
+..++.... |.....|+|.+||+|.++++.+....+ .+ ++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 267 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-II 267 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-EE
Confidence 345566666 888889999999999999988876554 56 89
Q ss_pred eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818 162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
.+|. |..++.|+++ ++|+++.+|+++ +.|. .|+++++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN 314 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence 9997 7788877753 579999999997 3444 4998875
No 163
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=97.90 E-value=1.6e-05 Score=63.26 Aligned_cols=65 Identities=17% Similarity=0.057 Sum_probs=53.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------CCceEEeCCCCCCCCcccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------LGVTHIGGDTFKSIPAADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------~ri~~~~gd~f~~~P~aD~~~l~ 198 (199)
.+.++|||||||+|..++++++. + .+ ++.+|+ |.+++.|+++ +|++++.+|.++.+..-|+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC
Confidence 34579999999999999999998 7 77 999997 7888888753 58999999998744123988763
No 164
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=97.90 E-value=1.5e-05 Score=61.38 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCCCCCc---c
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFKSIPA---A 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~~~P~---a 192 (199)
..+++.+. .....+|||||||+|.++..+++.. .+ ++.+|. |..++.+++. .+++++.+|+.+..|. .
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34555555 5666899999999999999999987 56 889997 6777776643 3899999999875442 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 136 D~v~~~ 141 (231)
T 1vbf_A 136 DRVVVW 141 (231)
T ss_dssp EEEEES
T ss_pred cEEEEC
Confidence 988864
No 165
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=97.89 E-value=1.3e-05 Score=65.17 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=58.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-c-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP-A- 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P-~- 191 (199)
.+++.++ .....+|||||||+|.++..+++..+. .+ ++.+|+ |+.++.++++ ++++++.+|+.+..| .
T Consensus 66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4555555 566689999999999999999999984 77 999997 7777777642 569999999987433 2
Q ss_pred -ccEEEec
Q 037818 192 -ADAIFMK 198 (199)
Q Consensus 192 -aD~~~l~ 198 (199)
.|+++..
T Consensus 144 ~fD~Iv~~ 151 (317)
T 1dl5_A 144 PYDVIFVT 151 (317)
T ss_dssp CEEEEEEC
T ss_pred CeEEEEEc
Confidence 3988864
No 166
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=97.88 E-value=9.1e-06 Score=64.24 Aligned_cols=64 Identities=6% Similarity=-0.065 Sum_probs=49.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------------------CCCceEEeCCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------------------ILGVTHIGGDTFK 187 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~f~ 187 (199)
...+|||||||+|..+..|++. ..+ ++.+|+ |..++.|++ ..+|+++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4579999999999999999987 457 999997 566665531 2579999999997
Q ss_pred -CCC--c-ccEEEec
Q 037818 188 -SIP--A-ADAIFMK 198 (199)
Q Consensus 188 -~~P--~-aD~~~l~ 198 (199)
+.+ . -|+|+.+
T Consensus 145 l~~~~~~~FD~V~~~ 159 (252)
T 2gb4_A 145 LPRANIGKFDRIWDR 159 (252)
T ss_dssp GGGGCCCCEEEEEES
T ss_pred CCcccCCCEEEEEEh
Confidence 433 2 3998753
No 167
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=97.88 E-value=9.4e-06 Score=64.71 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=55.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-cc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-AD 193 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-aD 193 (199)
.+++.++ .....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. -+++++.+|+.+ +.+. .|
T Consensus 111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD 186 (286)
T 3m70_A 111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186 (286)
T ss_dssp HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence 4445444 345689999999999999999998 557 999997 6777776642 289999999997 3444 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 187 ~i~~~ 191 (286)
T 3m70_A 187 FIVST 191 (286)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99874
No 168
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=97.87 E-value=9.8e-06 Score=67.76 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=49.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l 197 (199)
++|||||||+|.++...+++.. -+ ++.+|..+.++.|++ .++|+++.+|+.+ ++|+ .|+++-
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA-~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs 155 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGA-RR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 155 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred CEEEEeCCCccHHHHHHHHhCC-CE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence 7999999999999887777643 35 888998766666654 2789999999987 6887 599874
No 169
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=97.87 E-value=4.1e-06 Score=66.18 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---C--CceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---L--GVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~--ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
....+|+|||||+|.++..+++..+ + ++.+|. |..++.++++ . .+++..+|+.+.+|. .|+++.+
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n 191 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN 191 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEEC
Confidence 3457999999999999999999877 7 999998 7777777653 1 189999999875544 3988864
No 170
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.86 E-value=1.4e-05 Score=67.13 Aligned_cols=77 Identities=16% Similarity=0.030 Sum_probs=59.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI 161 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~ 161 (199)
+..++.... |.....|+|++||+|.++++++..-.+ .+ ++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-IY 261 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-EE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-EE
Confidence 345556566 887899999999999999998876433 57 89
Q ss_pred eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818 162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
.+|. |.+++.|+++ ++|++..+|+++ +.|. .|+++++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N 308 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN 308 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence 9997 7888888763 479999999997 3444 4998874
No 171
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=97.86 E-value=5.8e-06 Score=64.29 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=52.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..++++. ..+ ++.+|. |..++.+++. .+++++.+|+.+ +.+. .|+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEc
Confidence 46899999999999999999887 557 899997 7777777642 368999999876 4444 3999875
No 172
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=97.86 E-value=5.9e-06 Score=68.05 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=54.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCc--ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPA--ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~--aD~ 194 (199)
.+..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.|++ .+|++++.+|.++ ..+. -|+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4568999999999999999999888888 999998 777777764 2689999999875 2343 399
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
|++.
T Consensus 198 Ii~d 201 (334)
T 1xj5_A 198 VIVD 201 (334)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9863
No 173
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.85 E-value=6.7e-06 Score=66.59 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA 192 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a 192 (199)
..+++..+ .....+|||||||+|.++..++++. .+ ++.+|. |..++.+++ .++++++.+|+.+ +.+..
T Consensus 32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 34555555 5666899999999999999999873 46 889998 666666553 2689999999987 45555
Q ss_pred cEEEe
Q 037818 193 DAIFM 197 (199)
Q Consensus 193 D~~~l 197 (199)
|+++.
T Consensus 108 D~Vv~ 112 (299)
T 2h1r_A 108 DVCTA 112 (299)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88876
No 174
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.85 E-value=1.9e-05 Score=60.77 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCCcceEEEecCC-ccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCC--CCCCCc--ccEEEec
Q 037818 130 FKGVKQLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDT--FKSIPA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG-~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~--f~~~P~--aD~~~l~ 198 (199)
.....+||||||| +|.++..+++.. ..+ ++.+|. |..++.++++ .+++++.+|. +.++|. .|++++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence 3556899999999 999999999987 677 999998 7777777643 3799999996 456664 3998864
No 175
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=97.85 E-value=5.5e-06 Score=66.56 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA 191 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~ 191 (199)
.+++..+ .....+|||||||+|.++..++++.+. .+ ++.+|+ |..++.+++. ++++++.+|+++ +++.
T Consensus 33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 4555555 566689999999999999999998876 66 888897 5666666553 789999999987 4543
No 176
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=97.84 E-value=3.1e-06 Score=66.46 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C-----Cc-c
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I-----PA-A 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~-----P~-a 192 (199)
.+..+|||||||+|..+..+++..| +.+ ++.+|. |..++.|+++ +||+++.||..+. + +. .
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 3457999999999999999999997 778 999997 6667666642 6999999999763 2 23 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 138 D~V~~d 143 (242)
T 3r3h_A 138 DFIFID 143 (242)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 988863
No 177
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=97.84 E-value=5.3e-06 Score=67.92 Aligned_cols=66 Identities=18% Similarity=0.143 Sum_probs=53.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~ 196 (199)
+..+|||||||+|.+++.+++..|..+ ++.+|. |.+++.+++ .+|++++.+|.++.+ +. -|+|+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 457999999999999999999888888 999998 777777653 268999999987632 33 39988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 195 ~d 196 (321)
T 2pt6_A 195 VD 196 (321)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 178
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=97.84 E-value=4.1e-06 Score=64.55 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=53.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC-----c-c
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP-----A-A 192 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P-----~-a 192 (199)
.+..+|||||||+|..+..+++..| ..+ ++.+|. |..++.++++ ++|+++.+|.++. ++ . .
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 4557999999999999999999988 677 999998 7777777642 6899999998753 21 3 3
Q ss_pred cEEEec
Q 037818 193 DAIFMK 198 (199)
Q Consensus 193 D~~~l~ 198 (199)
|++++.
T Consensus 147 D~v~~d 152 (229)
T 2avd_A 147 DVAVVD 152 (229)
T ss_dssp EEEEEC
T ss_pred cEEEEC
Confidence 888764
No 179
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=97.84 E-value=4.4e-06 Score=64.91 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=50.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC---CCCc--ccEEEe
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK---SIPA--ADAIFM 197 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~---~~P~--aD~~~l 197 (199)
....+|||||||+|.++..+++..+. + ++.+|. |..++.+++. .+++++.+|+.+ ++|. .|+|+.
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 134 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY 134 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCCC-e-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence 34579999999999999999765553 7 899997 6777766542 679999999875 4665 399876
No 180
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.84 E-value=1.3e-05 Score=65.09 Aligned_cols=65 Identities=20% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK 187 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~ 187 (199)
..+++.++ .....+|||+|||+|.++..+++++|..+ ++.+|. |..++.|+++ +|++++.+||.+
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~ 86 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE 86 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence 34455555 55567999999999999999999999888 999997 7777777642 689999999764
No 181
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=97.84 E-value=6.1e-06 Score=62.96 Aligned_cols=73 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCC-----CCc--cc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKS-----IPA--AD 193 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~-----~P~--aD 193 (199)
.+++.+. .....+|||||||+|.++..+++. ..+ ++.+|. |..++.+++..++++..+|+.+- .+. .|
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444443 334489999999999999999988 557 899998 77888888778899999888742 222 39
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 119 ~v~~~ 123 (227)
T 3e8s_A 119 LICAN 123 (227)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88864
No 182
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=97.84 E-value=5.1e-06 Score=67.42 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=53.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCc-c-cE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPA-A-DA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~-a-D~ 194 (199)
.+..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|.++. .+. . |+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 4558999999999999999999878888 999998 777777653 27899999999862 133 3 99
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|++
T Consensus 173 Ii~ 175 (304)
T 3bwc_A 173 VII 175 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 183
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=97.83 E-value=6.6e-06 Score=64.08 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=47.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~ 187 (199)
....+|||||||+|..+..+++..| ..+ ++.+|. |..++.++++ ++|+++.+|..+
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE 123 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence 3457999999999999999999998 677 999998 7777777642 569999999875
No 184
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=97.83 E-value=7.5e-06 Score=66.53 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=54.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC--C-Cc-ccE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS--I-PA-ADA 194 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~--~-P~-aD~ 194 (199)
..+.++|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|.++. . +. -|+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence 34568999999999999999999988888 999998 777777653 37899999998752 2 23 399
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|++
T Consensus 172 Ii~ 174 (304)
T 2o07_A 172 IIT 174 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 185
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=97.83 E-value=4e-06 Score=63.92 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=52.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--c-ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--A-ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--~-aD~~~l 197 (199)
+..+|||||||+|..+..+++..| +.+ ++.+|. |..++.++++ +||+++.+|..+.+| . .|++++
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 132 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM 132 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence 457999999999999999999998 777 999998 7777777642 589999999975322 2 488775
No 186
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=97.82 E-value=2.2e-05 Score=65.78 Aligned_cols=77 Identities=13% Similarity=-0.057 Sum_probs=59.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI 161 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~ 161 (199)
+..++.... |.....|+|.+||+|.++++.+....+ .+ ++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-v~ 260 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD-IS 260 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-EE
Confidence 345566665 888899999999999999988876554 56 89
Q ss_pred eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818 162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK 198 (199)
Q Consensus 162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~ 198 (199)
.+|. |..++.|+++ ++|+++.+|+++ +.|. .|+++++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN 307 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence 9997 7778877753 579999999997 3444 4998874
No 187
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.82 E-value=1.9e-05 Score=59.81 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----C-CceEEeCCCCCCCCc-ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----L-GVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~-ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
....+|||+|||+|.++..+++..+ .+ ++.+|. |..++.++++ . +++++.+|+.+ +|. .|++++.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~ 119 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMN 119 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEEC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEc
Confidence 3457999999999999999998843 36 899998 7777777643 2 79999999987 344 4988864
No 188
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=97.81 E-value=8.9e-06 Score=64.98 Aligned_cols=73 Identities=14% Similarity=0.067 Sum_probs=54.5
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC-C-
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK-S- 188 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~-~- 188 (199)
.+.+.++ .....+|||||||+|.++..+++..+ + ++.+|+ |..++.+++ ..++.+..+|+.+ +
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (293)
T 3thr_A 48 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--S-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK 123 (293)
T ss_dssp HHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred HHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--e-EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence 3444443 34557999999999999999999855 7 899997 667776643 1688999999986 4
Q ss_pred --CCc--ccEEEec
Q 037818 189 --IPA--ADAIFMK 198 (199)
Q Consensus 189 --~P~--aD~~~l~ 198 (199)
++. .|+|++.
T Consensus 124 ~~~~~~~fD~V~~~ 137 (293)
T 3thr_A 124 DVPAGDGFDAVICL 137 (293)
T ss_dssp HSCCTTCEEEEEEC
T ss_pred ccccCCCeEEEEEc
Confidence 444 3999864
No 189
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.81 E-value=6.9e-06 Score=62.45 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC-----c-ccEEEe
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP-----A-ADAIFM 197 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P-----~-aD~~~l 197 (199)
..+|||+|||+|.++..++++.. .+ ++.+|. |..++.++++ ++++++.+|+++..+ . .|++++
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 36999999999999999887754 46 899997 6777777642 589999999875221 3 488886
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 132 ~ 132 (201)
T 2ift_A 132 D 132 (201)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=97.79 E-value=1.9e-05 Score=61.93 Aligned_cols=66 Identities=15% Similarity=0.254 Sum_probs=53.6
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIP 190 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P 190 (199)
..+++..+ .....+|||||||+|.++..++++. .+ ++.+|. |..++.++++ ++++++.+|+.+ ++|
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~ 90 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence 45566666 6666899999999999999999986 66 899998 6777777764 689999999987 555
No 191
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=97.78 E-value=7.8e-06 Score=66.13 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=52.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~ 196 (199)
+..+|||||||+|.++..+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|.++.+ +. .|+|+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 347999999999999999999888888 999998 777776653 368999999987532 23 39988
Q ss_pred e
Q 037818 197 M 197 (199)
Q Consensus 197 l 197 (199)
+
T Consensus 169 ~ 169 (296)
T 1inl_A 169 I 169 (296)
T ss_dssp E
T ss_pred E
Confidence 6
No 192
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=97.78 E-value=9.7e-06 Score=65.04 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=51.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----------------CCCCceEEeCCCCCCC--Cc-
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----------------SILGVTHIGGDTFKSI--PA- 191 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----------------~~~ri~~~~gd~f~~~--P~- 191 (199)
+..+|||||||+|.++..+++. |..+ ++.+|+ |.+++.++ ..+|++++.+|.++.+ +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4579999999999999999998 8888 999998 77776654 2368999999986522 33
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
-|+|++.
T Consensus 153 fD~Ii~d 159 (281)
T 1mjf_A 153 FDVIIAD 159 (281)
T ss_dssp EEEEEEE
T ss_pred eeEEEEC
Confidence 3888763
No 193
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=97.78 E-value=1.1e-05 Score=63.08 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=53.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C------Cc-
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I------PA- 191 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~------P~- 191 (199)
.+.++|||||||+|..+..++++.| +.+ .+.+|. |..++.++++ +||+++.+|.++. + +.
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 4567999999999999999999998 777 999998 7777777642 5899999998752 2 23
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
-|++++.
T Consensus 148 fD~I~~d 154 (237)
T 3c3y_A 148 YDFGFVD 154 (237)
T ss_dssp EEEEEEC
T ss_pred cCEEEEC
Confidence 3988863
No 194
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.78 E-value=5.9e-06 Score=64.20 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+++.. .+ ++.+|. |..++.++++ ++++++.+|+.+..+. .|++++.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~ 151 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS 151 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence 45799999999999999999975 67 899997 6777777642 5899999999873333 4998864
No 195
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.78 E-value=9.6e-06 Score=60.73 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=51.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~--aD~~~l~ 198 (199)
...+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++ ++++++.+|+.+. ++. .|++++.
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~ 120 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD 120 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence 3479999999999999988774 5567 999998 7888887753 6899999999862 322 4998874
No 196
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=97.78 E-value=6.1e-06 Score=66.32 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI 195 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~ 195 (199)
.+.++|||||||+|..++.+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|..+. .+.. |+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4558999999999999999999888888 999998 777777653 26899999998763 2333 998
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
++
T Consensus 156 i~ 157 (283)
T 2i7c_A 156 IV 157 (283)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 197
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=97.78 E-value=1.9e-05 Score=59.52 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=49.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
+|||||||+|.++..+++. ..+ ++.+|. |..++.+++. .+++++.+|+.+ ++|. .|++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 101 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI 101 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence 9999999999999999987 457 999998 6777777653 389999999987 5554 3998753
No 198
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=97.78 E-value=5.2e-06 Score=65.36 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C------Cc-
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I------PA- 191 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~------P~- 191 (199)
.+.++|||||||+|..+..+++..| +.+ ++.+|. |..++.++++ +||+++.+|..+. + +.
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 3457999999999999999999998 778 999998 6777777642 5899999998752 2 23
Q ss_pred ccEEEec
Q 037818 192 ADAIFMK 198 (199)
Q Consensus 192 aD~~~l~ 198 (199)
-|++++.
T Consensus 157 fD~V~~d 163 (247)
T 1sui_A 157 YDFIFVD 163 (247)
T ss_dssp BSEEEEC
T ss_pred EEEEEEc
Confidence 3998863
No 199
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=97.77 E-value=2.4e-05 Score=62.53 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIP 190 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P 190 (199)
.+++..+ .... +|||||||+|.++..++++. .+ ++.+|+ |..++.+++ .++++++.+|+++ +++
T Consensus 38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 38 RIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred HHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence 4555555 5555 99999999999999999986 56 888887 455555543 2689999999997 555
No 200
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=97.75 E-value=9.6e-06 Score=66.14 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=53.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---Ccc-cEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI---PAA-DAI 195 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~---P~a-D~~ 195 (199)
+..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++ .+|++++.+|..+.+ +.. |+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 457999999999999999999888888 999998 677776653 368999999997632 333 998
Q ss_pred Eec
Q 037818 196 FMK 198 (199)
Q Consensus 196 ~l~ 198 (199)
++.
T Consensus 156 i~d 158 (314)
T 1uir_A 156 IID 158 (314)
T ss_dssp EEE
T ss_pred EEC
Confidence 863
No 201
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=97.74 E-value=2.3e-05 Score=62.47 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CC-Cc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SI-PA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~-P~--aD~~~l~ 198 (199)
....+|||||||+|.++..+++. +..+ ++.+|. |..++.+++. .+++++.+|+.+ ++ +. .|++++.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 45579999999999999998776 5667 999998 6777766642 479999999997 55 33 3998864
No 202
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.74 E-value=1.3e-05 Score=60.92 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=50.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC--CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK--SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~--~~P~--aD~~~l~ 198 (199)
..+|||+|||+|.++..++++.. .+ ++.+|. |..++.++++ ++++++.+|+.+ +.+. .|++++.
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~ 129 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD 129 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence 36999999999999999888754 26 899998 6777777642 589999999876 3332 3988864
No 203
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=97.74 E-value=2.1e-05 Score=60.84 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=51.3
Q ss_pred ceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCC---CCc--ccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKS---IPA--ADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~---~P~--aD~~~l~ 198 (199)
.+|||||||+|..+..++++.| +.+ ++.+|. |+.++.|+++ +||+++.||..+. ++. .|++++.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 4999999999999999999986 777 999997 6667776642 5899999998762 422 3999874
No 204
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=97.74 E-value=1.9e-05 Score=71.78 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=53.4
Q ss_pred CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------------CCCceEEeCCCCC-CCCc--ccE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------------ILGVTHIGGDTFK-SIPA--ADA 194 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------------~~ri~~~~gd~f~-~~P~--aD~ 194 (199)
...+|||||||+|.++..+++.. |..+ ++.+|+ |..++.|++ .++|+++.+|+.+ +.+. .|+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 55799999999999999999999 5567 999998 666776643 2679999999987 4443 399
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
|++.
T Consensus 800 VV~~ 803 (950)
T 3htx_A 800 GTCL 803 (950)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8864
No 205
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=97.73 E-value=2.5e-05 Score=60.18 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=53.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC------CCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCCCc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSIPA 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~------l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~P~ 191 (199)
.....+|||||||+|.++..+++..+. .+ ++.+|. |..++.+++ .++++++.+|..+++|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 345579999999999999999997763 67 899996 677777664 25899999999886664
Q ss_pred ---ccEEEec
Q 037818 192 ---ADAIFMK 198 (199)
Q Consensus 192 ---aD~~~l~ 198 (199)
.|+++..
T Consensus 161 ~~~fD~I~~~ 170 (227)
T 1r18_A 161 NAPYNAIHVG 170 (227)
T ss_dssp GCSEEEEEEC
T ss_pred CCCccEEEEC
Confidence 3988764
No 206
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=97.72 E-value=1e-05 Score=66.06 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=53.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~ 196 (199)
+.++|||||||+|..++.+++..|..+ ++.+|+ |.+++.|++ .+|++++.+|.++.+ +. -|+|+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 457999999999999999999888888 999998 777777653 268999999987632 23 39988
Q ss_pred ec
Q 037818 197 MK 198 (199)
Q Consensus 197 l~ 198 (199)
+.
T Consensus 187 ~d 188 (314)
T 2b2c_A 187 TD 188 (314)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 207
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=97.72 E-value=7.2e-05 Score=55.90 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=52.4
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC---------CCeeeeccchHHHhcCCCCCCceEE-eCCCCCC----
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF---------ICEGINFDLPEVVGEAPSILGVTHI-GGDTFKS---- 188 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~---------l~~~~v~Dlp~v~~~a~~~~ri~~~-~gd~f~~---- 188 (199)
+...++.+....+|||||||+|.++..+++++|. .+ ++.+|+.+. ...++++++ .+|+.+.
T Consensus 13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 3344442455689999999999999999999875 77 999998662 124689999 9998762
Q ss_pred -----CCc--ccEEEe
Q 037818 189 -----IPA--ADAIFM 197 (199)
Q Consensus 189 -----~P~--aD~~~l 197 (199)
+|. .|+++.
T Consensus 88 ~~~~~~~~~~fD~V~~ 103 (196)
T 2nyu_A 88 RILEVLPGRRADVILS 103 (196)
T ss_dssp HHHHHSGGGCEEEEEE
T ss_pred HHHHhcCCCCCcEEEe
Confidence 232 498875
No 208
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.70 E-value=8.6e-06 Score=59.48 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=50.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----C-CceEEeCCCCCCCC-------cccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----L-GVTHIGGDTFKSIP-------AADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~-ri~~~~gd~f~~~P-------~aD~~~l~ 198 (199)
...+|+|+|||+|.++..+++..++ ++.+|. |..++.++++ . +++++.+|+.+..| ..|++++.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 4579999999999999999998764 778998 7778777753 2 89999999986322 24888864
No 209
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=97.69 E-value=1.7e-05 Score=62.88 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=51.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIP 190 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P 190 (199)
..+++..+ .....+|||||||+|.++..++++. .+ ++.+|. |..++.+++ .++++++.+|+++ +++
T Consensus 19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 34556665 6666899999999999999999986 46 888997 556665553 3799999999997 444
No 210
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=97.68 E-value=2.9e-05 Score=58.62 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=50.2
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
....+|||||||+|.+...++.. +..+ ++.+|. |..++.+++. .+++++.+|+.+ ++|. .|++++.
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 96 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSY 96 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEc
Confidence 34579999999999986555543 5678 999998 6777776642 689999999987 5654 3998864
No 211
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=97.68 E-value=6.4e-05 Score=57.14 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=46.2
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
.+++.+.......+|||||||+|.++..+. .+ ++.+|..+. ++++..+|+.+ ++|. .|++++.
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 344443213455799999999999998883 57 889998654 78899999987 5554 3998864
No 212
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=97.67 E-value=3.1e-05 Score=58.66 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=49.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCC-Ceeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+ .. + ++.+|. |..++.+++. ++++++.+|+.+ ++|. .|++++.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 102 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLF 102 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEc
Confidence 5579999999999999888 45 6 899997 6777777654 789999999986 5655 3998864
No 213
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=97.65 E-value=4.5e-05 Score=58.57 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-----CCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-----RFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI--- 189 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~--- 189 (199)
.....+|||||||+|.++..+++.. |+.+ ++.+|. |..++.+++ .++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE 156 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence 4455799999999999999999987 6788 999997 666776654 258999999998744
Q ss_pred -Cc---ccEEEec
Q 037818 190 -PA---ADAIFMK 198 (199)
Q Consensus 190 -P~---aD~~~l~ 198 (199)
+. .|++++.
T Consensus 157 ~~~~~~fD~I~~~ 169 (227)
T 2pbf_A 157 KKELGLFDAIHVG 169 (227)
T ss_dssp HHHHCCEEEEEEC
T ss_pred CccCCCcCEEEEC
Confidence 22 3888764
No 214
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=97.65 E-value=4.9e-05 Score=59.71 Aligned_cols=64 Identities=8% Similarity=0.013 Sum_probs=52.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-aD~~~l 197 (199)
+....+|+|||||.|-++..+. |..+ .+.+|+ +..++.++++ .+.++..+|+.. +.|. +|++++
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl 174 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI 174 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence 4456899999999999999888 8999 999998 6777777653 678999999997 4555 499865
No 215
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=97.64 E-value=1e-05 Score=62.85 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=52.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC-----c-cc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP-----A-AD 193 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P-----~-aD 193 (199)
+..+|||||||+|..+..+++..| +.+ .+.+|. |..++.++++ ++|+++.+|..+. +| . .|
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 457999999999999999999998 678 999998 6777777642 5899999998642 21 3 38
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 151 ~V~~d 155 (232)
T 3cbg_A 151 LIFID 155 (232)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88863
No 216
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.63 E-value=5e-05 Score=59.69 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
...+|||||||+|.++..+++. ..+ ++.+|. |..++.+++...-.++.+|+.+ ++|. .|++++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 121 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL 121 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEc
Confidence 5579999999999999999987 457 899998 6777777653212388899986 5655 3988764
No 217
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.62 E-value=4.2e-05 Score=65.00 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=55.0
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-----
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP----- 190 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P----- 190 (199)
+++.++ .....+|+|+|||+|.++..+++. ..+ ++.+|. |..++.|+++ ++++|+.+|.++.++
T Consensus 278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 334444 455579999999999999999988 566 899997 7778777642 589999999987432
Q ss_pred c--ccEEEec
Q 037818 191 A--ADAIFMK 198 (199)
Q Consensus 191 ~--aD~~~l~ 198 (199)
. .|++++.
T Consensus 354 ~~~fD~Vv~d 363 (433)
T 1uwv_A 354 KNGFDKVLLD 363 (433)
T ss_dssp TTCCSEEEEC
T ss_pred cCCCCEEEEC
Confidence 1 3988863
No 218
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=97.58 E-value=3.8e-05 Score=61.07 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=39.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
..+++.++ .....+|||||||+|.++..++++. .+ ++.+|. |..++.+++
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~-V~gvD~S~~ml~~Ar~ 85 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--AS-VTVFDFSQRMCDDLAE 85 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CE-EEEEECCHHHHHHHHH
Confidence 45566666 6667899999999999999999874 46 889997 667777765
No 219
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=97.57 E-value=5.5e-05 Score=67.12 Aligned_cols=95 Identities=21% Similarity=0.173 Sum_probs=63.2
Q ss_pred ccccccCchhHHHHHHHHhccchhhHHHHhhhCC---CCCCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccchH
Q 037818 95 YSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYN---GFKGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDLPE 167 (199)
Q Consensus 95 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dlp~ 167 (199)
||.+++|+-.-..|.+|+.. ++.+..+ .-.+...|+|||+|+|-+....+++ .-+++ +..++--+
T Consensus 324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp 395 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNP 395 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCH
T ss_pred hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCH
Confidence 67788888888888887741 2222111 0234468999999999985444443 33345 66677644
Q ss_pred HHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818 168 VVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM 197 (199)
Q Consensus 168 v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l 197 (199)
....+++ .++|+.+.||+-+ .+|+ +|+++-
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS 434 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS 434 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence 5545543 2899999999998 7888 599873
No 220
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=97.57 E-value=1.7e-05 Score=63.00 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=54.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l 197 (199)
...+|+|||||.|-++..+....|..+ .+.+|. +..++.++++ .+.++...|+..+.|. +|++++
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~ 204 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL 204 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence 468999999999999999999999999 999998 5667766653 5689999999975444 499865
No 221
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=97.57 E-value=5.5e-05 Score=59.77 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIP 190 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P 190 (199)
..+++..+ .....+|||||||+|.++. + ++.++.+ ++.+|+ |..++.+++. ++++++.+|+.+ ++|
T Consensus 11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 45556655 5666799999999999999 5 4567766 889997 6777766653 589999999987 443
No 222
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.54 E-value=5.1e-05 Score=60.87 Aligned_cols=66 Identities=18% Similarity=-0.018 Sum_probs=53.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
....+|||+|||+|.++..++++ ...+ ++.+|+ |..++.++++ ++|+++.+|.++-.+. +|.++|.
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~ 199 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG 199 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence 45589999999999999999876 4567 999998 7777777653 7899999999874333 5988875
No 223
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=97.53 E-value=0.00018 Score=57.23 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=48.1
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--C------CceEE--eCCCCCCCC-c-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--L------GVTHI--GGDTFKSIP-A-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~------ri~~~--~gd~f~~~P-~-aD~~~l 197 (199)
+....+|||||||+|.++..++++ -+ ++.+|+-+.+..+++. . +|+++ .+|+.+ +| . .|+++.
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~s 146 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMC 146 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEE
Confidence 456689999999999999999887 57 9999986544333322 2 68999 999986 33 3 499886
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 147 d 147 (265)
T 2oxt_A 147 D 147 (265)
T ss_dssp C
T ss_pred e
Confidence 3
No 224
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=97.52 E-value=0.00014 Score=58.69 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------------CCceEEeCCCCC-C----C--
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------------LGVTHIGGDTFK-S----I-- 189 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------------~ri~~~~gd~f~-~----~-- 189 (199)
....+|||||||+|.++..+++ .+..+ .+.+|+ |..++.+++. .+++++.+|+.+ + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 110 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD 110 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence 3557999999999999999988 46677 999998 5666666532 379999999986 3 3
Q ss_pred Cc--ccEEEec
Q 037818 190 PA--ADAIFMK 198 (199)
Q Consensus 190 P~--aD~~~l~ 198 (199)
+. .|+++..
T Consensus 111 ~~~~fD~V~~~ 121 (313)
T 3bgv_A 111 PQMCFDICSCQ 121 (313)
T ss_dssp TTCCEEEEEEE
T ss_pred CCCCEEEEEEe
Confidence 22 3998864
No 225
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=97.50 E-value=0.0001 Score=56.44 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=52.8
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCCC-c--cc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSIP-A--AD 193 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~P-~--aD 193 (199)
.....+|||||||+|.++..+++.. |..+ ++.+|. |..++.+++ .++++++.+|..+..+ . .|
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence 3455799999999999999999985 7778 999997 677776653 2489999999986432 2 38
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
++++.
T Consensus 154 ~i~~~ 158 (226)
T 1i1n_A 154 AIHVG 158 (226)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88764
No 226
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=97.50 E-value=0.00015 Score=58.06 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=48.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--C------CceEE--eCCCCCCCC-c-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--L------GVTHI--GGDTFKSIP-A-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~------ri~~~--~gd~f~~~P-~-aD~~~l 197 (199)
+....+|||||||+|.++..++++ -+ ++.+|+-+.+..+++. . +|+++ .+|+.+ +| . .|+++.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvs 154 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLC 154 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEE
Confidence 456689999999999999999988 57 9999986543333322 2 78999 999976 33 3 499886
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 155 d 155 (276)
T 2wa2_A 155 D 155 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 227
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.46 E-value=0.0001 Score=59.99 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=63.0
Q ss_pred hHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------
Q 037818 104 MNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------ 175 (199)
Q Consensus 104 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------ 175 (199)
....|....-.........+...++ .....+|||+|||+|..+..+++..+. .+ ++.+|. |..++.++++
T Consensus 91 ~~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~ 168 (315)
T 1ixk_A 91 STPEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGV 168 (315)
T ss_dssp GSHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTC
T ss_pred cChhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCC
Confidence 3344555443332222223334455 566689999999999999999999764 77 999997 5667666542
Q ss_pred CCceEEeCCCCC-C-CCc-ccEEEe
Q 037818 176 LGVTHIGGDTFK-S-IPA-ADAIFM 197 (199)
Q Consensus 176 ~ri~~~~gd~f~-~-~P~-aD~~~l 197 (199)
++++++.+|..+ + .+. .|+|++
T Consensus 169 ~~v~~~~~D~~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 169 LNVILFHSSSLHIGELNVEFDKILL 193 (315)
T ss_dssp CSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred CeEEEEECChhhcccccccCCEEEE
Confidence 579999999986 2 233 498886
No 228
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=97.43 E-value=0.00019 Score=58.25 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-----hHHHhcCC--CC--CCceEEeC-CCCCCCCc-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-----PEVVGEAP--SI--LGVTHIGG-DTFKSIPA-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-----p~v~~~a~--~~--~ri~~~~g-d~f~~~P~-aD~~~l 197 (199)
+....+|||||||+|.++..++++ -+ ++.+|. +..++..+ .. ++|+++.+ |+++.-+. .|+|+.
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s 154 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC 154 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence 455689999999999999999988 36 888898 54333322 12 67999999 99863233 599875
No 229
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=97.43 E-value=0.00014 Score=58.61 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---Ccc-cE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI---PAA-DA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~---P~a-D~ 194 (199)
.+.++||=||||.|..++++++..|--+ ++++|+ |.|++.+++ .+|++.+.+|-++-+ +.. |+
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4668999999999999999998777667 999997 788887763 389999999998732 223 98
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
|++
T Consensus 161 Ii~ 163 (294)
T 3o4f_A 161 IIS 163 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 230
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.43 E-value=0.00011 Score=61.56 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=51.5
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CC-c-ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IP-A-ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P-~-aD~~~l~ 198 (199)
...+|+|+|||+|.++..+++. ..+ ++.+|. |..++.++++ -+++++.+|+++. .+ . .|+|+++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~n 305 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTN 305 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEEC
Confidence 3469999999999999999998 457 999997 7778877753 3599999999984 33 2 3999874
No 231
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.41 E-value=5.8e-05 Score=59.83 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=50.7
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-h-------HHHhcCCCC-------CCceEEeCCCCCC---CC-
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-P-------EVVGEAPSI-------LGVTHIGGDTFKS---IP- 190 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p-------~v~~~a~~~-------~ri~~~~gd~f~~---~P- 190 (199)
.....+|||+|||+|.++..+++. ..+ ++.+|. | ..++.++++ +||+++.+|..+- ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence 444579999999999999999986 467 999998 5 455666543 5799999999862 43
Q ss_pred --c-ccEEEec
Q 037818 191 --A-ADAIFMK 198 (199)
Q Consensus 191 --~-aD~~~l~ 198 (199)
. .|++++.
T Consensus 158 ~~~~fD~V~~d 168 (258)
T 2r6z_A 158 TQGKPDIVYLD 168 (258)
T ss_dssp HHCCCSEEEEC
T ss_pred cCCCccEEEEC
Confidence 3 4988873
No 232
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=97.39 E-value=0.00013 Score=55.83 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=46.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~ 198 (199)
..+|||||||+|.++..+++. +.+|. |..++.+++. +++++.+|+.+ +++. .|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEc
Confidence 579999999999999988765 67786 6777777655 89999999876 5554 3998864
No 233
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=97.36 E-value=0.00048 Score=53.71 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=51.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccchH-H----HhcCCCCCCceEEeCCCCCC-----CCc-ccEEEe
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDLPE-V----VGEAPSILGVTHIGGDTFKS-----IPA-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dlp~-v----~~~a~~~~ri~~~~gd~f~~-----~P~-aD~~~l 197 (199)
+....+|||+|||+|.++..+++. .|+-+ ++.+|.-+ . ++.+++..+|+++.+|...+ ++. .|+++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~ 152 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV 152 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence 566689999999999999999986 46777 99999843 2 34455557899999998753 122 488875
No 234
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=97.30 E-value=0.00013 Score=59.83 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=51.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCcccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPAADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~aD~~~l~ 198 (199)
....+|+|+|||+|.++.. ++ ...+ ++.+|. |..++.++++ ++++++.+|.++.....|++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 3457999999999999999 76 4667 999998 7888877653 58999999999755334998874
No 235
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=97.29 E-value=7.9e-05 Score=61.82 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=51.7
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------------CCceEEeCCCCCCC------
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------------LGVTHIGGDTFKSI------ 189 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gd~f~~~------ 189 (199)
.+.++|||||||.|..++++++..| .+ ++.+|+ |.+++.++++ +|++++.+|-++-+
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~-Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~ 264 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE 264 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CE-EEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc
Confidence 3568999999999999999998765 66 999997 7888877642 27999999998732
Q ss_pred Cc-ccEEEe
Q 037818 190 PA-ADAIFM 197 (199)
Q Consensus 190 P~-aD~~~l 197 (199)
+. -|+|++
T Consensus 265 ~~~fDvII~ 273 (364)
T 2qfm_A 265 GREFDYVIN 273 (364)
T ss_dssp TCCEEEEEE
T ss_pred CCCceEEEE
Confidence 22 388876
No 236
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=97.27 E-value=0.00029 Score=56.25 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=46.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcCCCC----------------CCceEEeCCCCC---CC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEAPSI----------------LGVTHIGGDTFK---SI 189 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a~~~----------------~ri~~~~gd~f~---~~ 189 (199)
....+|||||||+|.++..+++.. ..+ ++.+|. |..++.++++ ++|++...|.-+ .+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 345799999999999999888763 346 999999 6777665431 378888655443 22
Q ss_pred -----Cc-ccEEEe
Q 037818 190 -----PA-ADAIFM 197 (199)
Q Consensus 190 -----P~-aD~~~l 197 (199)
+. .|+|++
T Consensus 156 ~~~~~~~~fD~Ii~ 169 (281)
T 3bzb_A 156 QRCTGLQRFQVVLL 169 (281)
T ss_dssp HHHHSCSSBSEEEE
T ss_pred HhhccCCCCCEEEE
Confidence 22 388876
No 237
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=97.26 E-value=5.6e-05 Score=59.11 Aligned_cols=41 Identities=15% Similarity=-0.026 Sum_probs=33.3
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
....+|||||||+|.++..+++..+ .+ ++.+|. |..++.++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~ 96 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQ 96 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHH
Confidence 4457999999999999999998877 56 889998 56666664
No 238
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.26 E-value=0.0001 Score=58.65 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=53.7
Q ss_pred hCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-C-----Cc
Q 037818 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-I-----PA 191 (199)
Q Consensus 126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-~-----P~ 191 (199)
.++ .....+|+|+|||+|..+..+++..++ .+ ++.+|. |..++.++++ ++++++.+|..+. . +.
T Consensus 78 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~ 155 (274)
T 3ajd_A 78 VLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEI 155 (274)
T ss_dssp HHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTC
T ss_pred HhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccc
Confidence 344 455679999999999999999999887 67 999997 5556665542 5899999998752 1 33
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|+|++
T Consensus 156 ~fD~Vl~ 162 (274)
T 3ajd_A 156 FFDKILL 162 (274)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 388876
No 239
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=97.26 E-value=0.00015 Score=59.60 Aligned_cols=66 Identities=11% Similarity=0.159 Sum_probs=53.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC-----CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEec
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRF-----ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFMK 198 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~-----l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l~ 198 (199)
...+|+|+|||+|.++..+++..|. .+ ++.+|+ |..++.|+.+ .++.+..+|.+++.+. .|+++.+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 4579999999999999999999876 56 899998 6777777642 3689999999986543 4988764
No 240
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=97.23 E-value=0.00022 Score=57.01 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCcceEEEecCCc--cHHHHH-HHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSA--GDCLRM-ILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~--G~~~~~-l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
.+..+|||||||. +....+ +.+.+|+.+ ++.+|. |.+++.+++. .+++++.+|+.+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD 142 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence 3568999999997 333444 445789999 999998 8999998752 479999999986
No 241
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=97.23 E-value=7.2e-05 Score=61.46 Aligned_cols=63 Identities=17% Similarity=0.121 Sum_probs=50.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------C-CceEEeCCCCCCC------Cc-ccEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------L-GVTHIGGDTFKSI------PA-ADAI 195 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gd~f~~~------P~-aD~~ 195 (199)
...+|||+|||+|.++..+++... + ++.+|. |..++.++++ + +++++.+|.++.. .. .|+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 346999999999999999999754 7 999998 7778777653 2 5999999998732 22 4999
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
++
T Consensus 230 i~ 231 (332)
T 2igt_A 230 LT 231 (332)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 242
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=97.20 E-value=0.00036 Score=59.21 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=50.9
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-ccEEEec
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-ADAIFMK 198 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-aD~~~l~ 198 (199)
....+|+|+|||+|.++..+++.. .+ ++.+|. |..++.|+++ + ++++.+|.++..+. .|++++.
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~~--~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d 360 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKRG--FN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD 360 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred CCCCEEEEeeccchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence 344799999999999999999873 46 889997 6778777653 4 99999999985554 5988863
No 243
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.17 E-value=0.00037 Score=62.80 Aligned_cols=77 Identities=13% Similarity=0.016 Sum_probs=58.5
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK------------------------------------------HRFI 157 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~------------------------------------------~P~l 157 (199)
+..++.... |.....|+|.+||+|.++++.+.. .|+.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 345556565 887789999999999999988764 3446
Q ss_pred Ceeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCC----cccEEEec
Q 037818 158 CEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIP----AADAIFMK 198 (199)
Q Consensus 158 ~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P----~aD~~~l~ 198 (199)
+ ++.+|. |..++.|+.+ ++|++..+|+++ ..| ..|+++.+
T Consensus 258 ~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N 310 (703)
T 3v97_A 258 H-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN 310 (703)
T ss_dssp C-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred c-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence 7 899997 7888888753 569999999986 223 23888764
No 244
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.00047 Score=58.80 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=61.5
Q ss_pred HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CC
Q 037818 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LG 177 (199)
Q Consensus 106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~r 177 (199)
..|....-.........+...++ .....+|||+|||+|..+..+++..++ .+ ++.+|. |..++.++++ ++
T Consensus 234 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~ 311 (450)
T 2yxl_A 234 SAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKI 311 (450)
T ss_dssp HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCS
T ss_pred chhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 44554433222222223334444 555679999999999999999999988 67 999997 4556555432 57
Q ss_pred ceEEeCCCCCC---CC-c-ccEEEe
Q 037818 178 VTHIGGDTFKS---IP-A-ADAIFM 197 (199)
Q Consensus 178 i~~~~gd~f~~---~P-~-aD~~~l 197 (199)
++++.+|+.+. ++ . .|+|++
T Consensus 312 v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 312 VKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp EEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred EEEEEcChhhcchhhccCCCCEEEE
Confidence 99999999862 44 3 399886
No 245
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=97.10 E-value=0.00038 Score=58.56 Aligned_cols=63 Identities=13% Similarity=0.077 Sum_probs=47.4
Q ss_pred CcceEEEecCC------ccHHHHHHHHH-CCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCC-------c-ccEE
Q 037818 132 GVKQLVDVGGS------AGDCLRMILQK-HRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIP-------A-ADAI 195 (199)
Q Consensus 132 ~~~~vvDvGGG------~G~~~~~l~~~-~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P-------~-aD~~ 195 (199)
+..+||||||| +|..+..++++ +|+.+ ++.+|+-+... ...+||+++.+|+.+ +++ . .|+|
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSH--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGG--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHh--hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 34799999999 66767777765 69999 99999854432 235899999999987 444 2 3988
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
+.
T Consensus 293 is 294 (419)
T 3sso_A 293 ID 294 (419)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 246
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=97.09 E-value=0.0015 Score=50.87 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred hCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcC----CCCCCceEEeCCCCCC--CC--c--cc
Q 037818 126 GYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEA----PSILGVTHIGGDTFKS--IP--A--AD 193 (199)
Q Consensus 126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a----~~~~ri~~~~gd~f~~--~P--~--aD 193 (199)
.++ .+...+|+|||||+|.++..+++. -|+=+ ++.+|. |..++.+ ++.++++.+.+|.-++ .| . .|
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence 344 677799999999999999999997 48888 999997 5555444 4457899998888752 22 2 38
Q ss_pred EEEe
Q 037818 194 AIFM 197 (199)
Q Consensus 194 ~~~l 197 (199)
++++
T Consensus 150 vVf~ 153 (233)
T 4df3_A 150 GLYA 153 (233)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 247
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.02 E-value=0.00014 Score=60.85 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=50.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C--CceEEeCCCCCCCC-------cccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L--GVTHIGGDTFKSIP-------AADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~--ri~~~~gd~f~~~P-------~aD~ 194 (199)
....+|||+|||+|.++..+++.. .-+ ++.+|. |..++.|+++ + +++++.+|.++.+| ..|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~ 288 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 288 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence 455799999999999999999863 235 899997 7777777652 3 89999999987332 2399
Q ss_pred EEe
Q 037818 195 IFM 197 (199)
Q Consensus 195 ~~l 197 (199)
+++
T Consensus 289 Ii~ 291 (385)
T 2b78_A 289 III 291 (385)
T ss_dssp EEE
T ss_pred EEE
Confidence 887
No 248
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=96.93 E-value=0.00027 Score=62.06 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=48.2
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----C--CCceEEeCCCCC---CCCc--ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----I--LGVTHIGGDTFK---SIPA--ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~--~ri~~~~gd~f~---~~P~--aD~~~l 197 (199)
+.-+|||||||.|.++..+++. ..+ +|.+|. |..++.|+. . -.|+|..+|..+ +.+. -|+|+.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence 4468999999999999999997 567 899997 677777763 2 358999998754 3333 398864
No 249
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.88 E-value=0.00031 Score=59.27 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=49.5
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC-----cccEEEec
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP-----AADAIFMK 198 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P-----~aD~~~l~ 198 (199)
..+|+|+|||+|..+..+++.. .+ ++.+|. |..++.++.+ ++|+++.+|+++.++ ..|+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g--~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKA--SQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTC--SE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 4799999999999999998874 56 899997 6667666542 579999999997422 24998873
No 250
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=96.79 E-value=0.00082 Score=54.32 Aligned_cols=51 Identities=8% Similarity=0.048 Sum_probs=38.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----C-------CceEEeCCC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----L-------GVTHIGGDT 185 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~-------ri~~~~gd~ 185 (199)
..+|||||||+|..+..+++.. ..+ ++.+|+ |..++.|++. . +++|..+|+
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~ 112 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI 112 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred CCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence 4799999999998777666543 456 899998 6778877752 1 267888887
No 251
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.79 E-value=0.00025 Score=59.42 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=50.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccEEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~~~ 196 (199)
...+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++ ++++++.+|.++.. +. .|+++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 5579999999999999999987 4446 899998 7777777653 28999999998632 22 39988
Q ss_pred e
Q 037818 197 M 197 (199)
Q Consensus 197 l 197 (199)
+
T Consensus 295 ~ 295 (396)
T 2as0_A 295 L 295 (396)
T ss_dssp E
T ss_pred E
Confidence 7
No 252
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=96.79 E-value=0.00085 Score=53.13 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHHhhhCCCCCCc--ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH--------HhcCCC-------C-CCceEEe
Q 037818 121 TSVLDGYNGFKGV--KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV--------VGEAPS-------I-LGVTHIG 182 (199)
Q Consensus 121 ~~~~~~~~~~~~~--~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v--------~~~a~~-------~-~ri~~~~ 182 (199)
..+.+... .... .+|||++||.|..+..++++ ..+ ++.+|.-+. ++.++. . +||+++.
T Consensus 76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~ 151 (258)
T 2oyr_A 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (258)
T ss_dssp SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence 34555554 4444 79999999999999999998 568 999998543 333321 1 5799999
Q ss_pred CCCCC---CCCc-ccEEEec
Q 037818 183 GDTFK---SIPA-ADAIFMK 198 (199)
Q Consensus 183 gd~f~---~~P~-aD~~~l~ 198 (199)
+|..+ .++. .|++++.
T Consensus 152 ~D~~~~L~~~~~~fDvV~lD 171 (258)
T 2oyr_A 152 ASSLTALTDITPRPQVVYLD 171 (258)
T ss_dssp SCHHHHSTTCSSCCSEEEEC
T ss_pred CCHHHHHHhCcccCCEEEEc
Confidence 99875 2343 4998873
No 253
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=96.77 E-value=0.00022 Score=59.46 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=51.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC------Cc-ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI------PA-ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~------P~-aD~~~l 197 (199)
...+|||+|||+|.++..+++. ..+ ++.+|. |..++.++++ ++++++.+|.++.. +. .|++++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence 5679999999999999999998 556 899998 7888877753 45999999998632 22 398887
No 254
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=96.74 E-value=0.00015 Score=57.16 Aligned_cols=41 Identities=12% Similarity=-0.074 Sum_probs=28.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
....+|||||||+|.++..+++..- -+ ++.+|. |..++.++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~ 95 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELE 95 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHH
Confidence 3457999999999988766554432 25 888997 55555443
No 255
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=96.73 E-value=0.0006 Score=56.60 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=42.0
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK 187 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~ 187 (199)
.+|+|+|||+|.++..+++.. -+ ++.+|. |..++.|+++ ++++++.+|.++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~ 272 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 272 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred CEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 689999999999999988754 35 889997 6777777642 689999999875
No 256
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.71 E-value=0.0011 Score=56.35 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=54.8
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-------------CCCCeeeeccc-hHHHhcCCCC------C--Cce
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-------------RFICEGINFDL-PEVVGEAPSI------L--GVT 179 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------------P~l~~~~v~Dl-p~v~~~a~~~------~--ri~ 179 (199)
.+++..+ .....+|+|+|||+|.++..+.+.. +..+ .+.+|+ |..++.|+.+ + ++.
T Consensus 162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 4444444 4445799999999999999988764 5677 899997 7777776532 2 788
Q ss_pred EEeCCCCCC-CCc-ccEEEec
Q 037818 180 HIGGDTFKS-IPA-ADAIFMK 198 (199)
Q Consensus 180 ~~~gd~f~~-~P~-aD~~~l~ 198 (199)
+..+|.+.. ... .|+++.+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~N 260 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILAN 260 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEEC
T ss_pred EeeCCCCCCcccCCcCEEEEC
Confidence 999999973 332 4988764
No 257
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=96.67 E-value=0.0025 Score=49.42 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=34.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
.+++.++.-....+|||||||+|.++..++++ ...+ ++.+|+ |..++.++
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~-V~gvDis~~ml~~a~ 77 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKL-VYALDVGTNQLAWKI 77 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSCCCCCHHH
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCE-EEEEcCCHHHHHHHH
Confidence 34445541123469999999999999999988 3347 999997 45555443
No 258
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=96.65 E-value=0.00094 Score=56.00 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=41.3
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI 175 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~ 175 (199)
+..+++.++ .....+|||||||+|.++..++++.. + ++.+|. +..++.+++.
T Consensus 96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~--~-v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGV--R-HLGFEPSSGVAAKAREK 148 (416)
T ss_dssp HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTC--E-EEEECCCHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCC--c-EEEECCCHHHHHHHHHc
Confidence 445667766 66678999999999999999998744 7 899998 5677777654
No 259
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.63 E-value=0.00036 Score=58.46 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=51.1
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------C-CceEEeCCCCCCCC------c-ccE
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------L-GVTHIGGDTFKSIP------A-ADA 194 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gd~f~~~P------~-aD~ 194 (199)
....+|||+|||+|.++..+++.. ..+ ++.+|. |..++.++++ + +++++.+|.++..+ . .|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 345799999999999999999875 446 899998 6777777642 2 78999999987322 2 498
Q ss_pred EEec
Q 037818 195 IFMK 198 (199)
Q Consensus 195 ~~l~ 198 (199)
+++.
T Consensus 297 Ii~d 300 (396)
T 3c0k_A 297 IVMD 300 (396)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8873
No 260
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.61 E-value=0.0011 Score=56.21 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc--cc
Q 037818 125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA--AD 193 (199)
Q Consensus 125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~--aD 193 (199)
..++ .....+|+|+|||+|..+..+++..|+.+ ++.+|. |..++.++++ -+++++.+|+.+. ++. .|
T Consensus 240 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD 317 (429)
T 1sqg_A 240 TWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 317 (429)
T ss_dssp HHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred HHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence 3344 44557999999999999999999999988 999997 5555555432 3589999999863 343 49
Q ss_pred EEEe
Q 037818 194 AIFM 197 (199)
Q Consensus 194 ~~~l 197 (199)
+|++
T Consensus 318 ~Vl~ 321 (429)
T 1sqg_A 318 RILL 321 (429)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 261
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.61 E-value=0.002 Score=51.57 Aligned_cols=64 Identities=25% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK 187 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~ 187 (199)
...+++.+. ......+||+++|.|.++..++++ +.+ .+.+|. |..++.+++. +|++++.+||-+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 666789999999999999999998 678 999997 6666555322 699999999964
No 262
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.59 E-value=0.002 Score=46.48 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=39.9
Q ss_pred CcceEEEecCCccH-HHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCC----cccEEE
Q 037818 132 GVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIP----AADAIF 196 (199)
Q Consensus 132 ~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P----~aD~~~ 196 (199)
...++||||||+|. .+..|++. -+.. ++..|+ |..++ ++..|+|++.+ .+|+++
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEE
Confidence 34699999999995 66666653 5677 888885 54444 88999999766 358773
No 263
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=96.57 E-value=0.0005 Score=54.73 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=28.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
...+|||||||+|.+ ..++...+..+ ++.+|+ |..++.++
T Consensus 71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~-v~gvD~s~~~l~~a~ 111 (289)
T 2g72_A 71 SGRTLIDIGSGPTVY-QLLSACSHFED-ITMTDFLEVNRQELG 111 (289)
T ss_dssp CCSEEEEETCTTCCG-GGTTGGGGCSE-EEEECSCHHHHHHHH
T ss_pred CCCeEEEECCCcChH-HHHhhccCCCe-EEEeCCCHHHHHHHH
Confidence 447999999999994 34444455567 999998 56665544
No 264
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=96.55 E-value=0.0012 Score=59.16 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=59.4
Q ss_pred cccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH----C---------CCCCee
Q 037818 94 AYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK----H---------RFICEG 160 (199)
Q Consensus 94 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~----~---------P~l~~~ 160 (199)
.||.+.+|+-+-..|.+|+.. .+.+.++.-.+...|+|||||+|.+....+++ . ...+ +
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-V 449 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-L 449 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-E
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-E
Confidence 367777888777778877642 12222110124578999999999996543332 2 2335 7
Q ss_pred eeccch-HHHhcCC-----C-CCCceEEeCCCCC-CC------Cc-ccEEE
Q 037818 161 INFDLP-EVVGEAP-----S-ILGVTHIGGDTFK-SI------PA-ADAIF 196 (199)
Q Consensus 161 ~v~Dlp-~v~~~a~-----~-~~ri~~~~gd~f~-~~------P~-aD~~~ 196 (199)
+.+|-- ..+...+ . .++|+++.||+-+ .+ |+ +|+++
T Consensus 450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence 777763 2222211 1 2789999999987 56 55 69986
No 265
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=96.51 E-value=0.0025 Score=50.78 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.2
Q ss_pred CcceEEEecCCccHHHH----HHHHHCCCCCee--eeccc-hHHHhcCC
Q 037818 132 GVKQLVDVGGSAGDCLR----MILQKHRFICEG--INFDL-PEVVGEAP 173 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~----~l~~~~P~l~~~--~v~Dl-p~v~~~a~ 173 (199)
...+|||||||+|.++. .++.++|+.+ + +.+|. ++.++.++
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~ 99 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYK 99 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHH
Confidence 34699999999997544 5566788885 5 99996 55565554
No 266
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=96.34 E-value=0.0037 Score=51.88 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCc---ccEEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPA---ADAIF 196 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~---aD~~~ 196 (199)
+....++||+|+++|.++..++++ ..+ ++.+|.-+.-......++|+++.+|.|+-.|. .|+++
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vv 275 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMV 275 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEE
Confidence 345689999999999999999988 567 99999643333334568999999999985443 37765
No 267
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.27 E-value=0.0014 Score=56.18 Aligned_cols=72 Identities=7% Similarity=-0.057 Sum_probs=54.0
Q ss_pred HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc
Q 037818 123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA 191 (199)
Q Consensus 123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~ 191 (199)
+...++ .....+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++ . |+++.+|..+ + .+.
T Consensus 93 ~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~ 169 (464)
T 3m6w_A 93 VGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGT 169 (464)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCS
T ss_pred HHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccc
Confidence 334444 455689999999999999999999876 56 899997 5666666543 4 8999999875 2 334
Q ss_pred -ccEEEe
Q 037818 192 -ADAIFM 197 (199)
Q Consensus 192 -aD~~~l 197 (199)
.|+|++
T Consensus 170 ~FD~Il~ 176 (464)
T 3m6w_A 170 YFHRVLL 176 (464)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 498885
No 268
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.26 E-value=0.001 Score=59.87 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=49.8
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC---Cc-ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI---PA-ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~---P~-aD~~~l 197 (199)
..++|||+|||+|.++..+++... -+ ++.+|+ |..++.++++ ++++++.+|.++.+ .. .|+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 347999999999999999998543 35 899998 6777777652 48999999999732 22 399887
No 269
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.15 E-value=0.0055 Score=52.67 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=51.1
Q ss_pred CcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc-ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA-ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~-aD~~~l 197 (199)
...+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++ ++|+++.+|..+ + .+. .|+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence 5679999999999999999999764 66 899997 5556665542 579999999976 2 344 499886
No 270
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.14 E-value=0.0048 Score=50.04 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CC---cccEE
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IP---AADAI 195 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P---~aD~~ 195 (199)
.....+|||+|+|+|..+..+++.. +.-+ ++.+|. |..++.++++ ++|+++.+|+.+- .+ ..|.|
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V 178 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 178 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence 4555799999999999999999985 5567 999997 5556655542 6799999998762 11 24888
Q ss_pred Ee
Q 037818 196 FM 197 (199)
Q Consensus 196 ~l 197 (199)
++
T Consensus 179 l~ 180 (309)
T 2b9e_A 179 LL 180 (309)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 271
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=96.04 E-value=0.0092 Score=47.99 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=40.2
Q ss_pred HHHhhhCCCCC-CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc-CCCCCCceEE
Q 037818 121 TSVLDGYNGFK-GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE-APSILGVTHI 181 (199)
Q Consensus 121 ~~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~-a~~~~ri~~~ 181 (199)
..+++.+. .. ...++||||||+|.++..+++. +.-+ ++.+|. |..++. .+..+|+...
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~ 134 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSM 134 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEE
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCccccee
Confidence 34556665 43 4479999999999999988886 5556 899998 455554 3334565443
No 272
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.93 E-value=0.0021 Score=54.92 Aligned_cols=90 Identities=10% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CC
Q 037818 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LG 177 (199)
Q Consensus 106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~r 177 (199)
..|....-........-+...++ .....+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++ .+
T Consensus 80 ~~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~n 157 (456)
T 3m4x_A 80 FLHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSN 157 (456)
T ss_dssp HHHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSS
T ss_pred hHHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 34544433332222233334444 455689999999999999999998775 56 899997 5566666542 57
Q ss_pred ceEEeCCCCC--C-CCc-ccEEEe
Q 037818 178 VTHIGGDTFK--S-IPA-ADAIFM 197 (199)
Q Consensus 178 i~~~~gd~f~--~-~P~-aD~~~l 197 (199)
|+++.+|..+ + .+. .|+|++
T Consensus 158 v~v~~~Da~~l~~~~~~~FD~Il~ 181 (456)
T 3m4x_A 158 AIVTNHAPAELVPHFSGFFDRIVV 181 (456)
T ss_dssp EEEECCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEeCCHHHhhhhccccCCEEEE
Confidence 9999999875 1 344 498876
No 273
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=95.92 E-value=0.0028 Score=53.14 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=47.0
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc-ccEEEe
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA-ADAIFM 197 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~-aD~~~l 197 (199)
..+|||+|||+|.++..+++. ..+ ++.+|+ |..++.++++ -..++..+|.++. .+. .|+|++
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~--ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~ 286 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK--GAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL 286 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred CCeEEEcccchhHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence 589999999999999999987 456 889997 6777777653 1235669999863 233 488886
No 274
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=95.82 E-value=0.011 Score=47.56 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=44.1
Q ss_pred CCCcceEEEecC------CccHHHHHHHHHCC-CCCeeeeccchHHHhcCCCCCCceE-EeCCCCC-CCCc-ccEEEe
Q 037818 130 FKGVKQLVDVGG------SAGDCLRMILQKHR-FICEGINFDLPEVVGEAPSILGVTH-IGGDTFK-SIPA-ADAIFM 197 (199)
Q Consensus 130 ~~~~~~vvDvGG------G~G~~~~~l~~~~P-~l~~~~v~Dlp~v~~~a~~~~ri~~-~~gd~f~-~~P~-aD~~~l 197 (199)
.....+|||||| |+|. ..+++..| +.+ ++.+|+-+. .+++++ +.+|+.+ +++. .|+|+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvs 129 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIIS 129 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC------CCCCEEEEECccccCCccCcccEEEE
Confidence 556679999999 4477 44566777 678 999998554 257999 9999987 4444 499875
No 275
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=95.59 E-value=0.0023 Score=53.63 Aligned_cols=67 Identities=9% Similarity=-0.064 Sum_probs=51.9
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CC-ceEEeCCCCCC----CCc-ccEEEe
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LG-VTHIGGDTFKS----IPA-ADAIFM 197 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~r-i~~~~gd~f~~----~P~-aD~~~l 197 (199)
...+|||+++|+|.++..++++.+...+++.+|. |..++.++++ ++ ++++.+|.++- .+. .|+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 3479999999999999999998776433899998 7777777753 45 99999998752 233 498886
Q ss_pred c
Q 037818 198 K 198 (199)
Q Consensus 198 ~ 198 (199)
.
T Consensus 132 D 132 (392)
T 3axs_A 132 D 132 (392)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=95.48 E-value=0.0088 Score=49.80 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=43.4
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------------CCceEEeCCCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------------LGVTHIGGDTFK 187 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gd~f~ 187 (199)
..++||=||||.|..++++++ ||.-+ ++++|+ |.|++.+++. +|++.+.+|-++
T Consensus 205 ~pkrVLIIGgGdG~~~revlk-h~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~ 273 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK-LKPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP 273 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT-TCCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred CCCeEEEECCCcHHHHHHHHh-cCCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence 358999999999999999997 56566 999997 7888876531 578888888764
No 277
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=95.47 E-value=0.01 Score=46.75 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=46.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH--CCCCC-eeeeccchHHHhcCCCCCCc---eEEeC-CCCCCCCc-
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK--HRFIC-EGINFDLPEVVGEAPSILGV---THIGG-DTFKSIPA- 191 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~-~~~v~Dlp~v~~~a~~~~ri---~~~~g-d~f~~~P~- 191 (199)
...|-+.+ .+....+|||+||+.|.++.-+++. -..++ +.+..|+| ..+.....+.+ .++.| ||++.-|.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH-EEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS-CCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc-cCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 34555665 5777899999999999999988885 32323 12455542 11111111454 55557 99974443
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|+++-
T Consensus 140 ~DvVLS 145 (269)
T 2px2_A 140 SDTLLC 145 (269)
T ss_dssp CSEEEE
T ss_pred CCEEEe
Confidence 598873
No 278
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.42 E-value=0.031 Score=45.81 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC--CCCceEEeCCCCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS--ILGVTHIGGDTFK 187 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~--~~ri~~~~gd~f~ 187 (199)
...+++.+. ......+||...|.|..+.+++++. |+.+ .+.+|. |..++.++. .+|++++.++|-+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777776 5666899999999999999999985 8889 999997 677777753 2799999999865
No 279
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=95.05 E-value=0.047 Score=42.57 Aligned_cols=75 Identities=12% Similarity=0.082 Sum_probs=51.8
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhc----CCC--CCCceEEeC-CCCC--CCC
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE----APS--ILGVTHIGG-DTFK--SIP 190 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~----a~~--~~ri~~~~g-d~f~--~~P 190 (199)
...+.+.+- +.....|||+||++|.++.-++....--+ +..+|+-..--. .+. .+-|+|..+ |+|. +.|
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 345566664 66667999999999999997777665557 888887322111 111 278999999 9874 333
Q ss_pred cccEEEe
Q 037818 191 AADAIFM 197 (199)
Q Consensus 191 ~aD~~~l 197 (199)
.|+++.
T Consensus 145 -~Dtllc 150 (267)
T 3p8z_A 145 -CDTLLC 150 (267)
T ss_dssp -CSEEEE
T ss_pred -ccEEEE
Confidence 488764
No 280
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=94.55 E-value=0.025 Score=49.28 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=51.8
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC------------------CCCeeeeccc-hHHHhcCCCC------
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR------------------FICEGINFDL-PEVVGEAPSI------ 175 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P------------------~l~~~~v~Dl-p~v~~~a~~~------ 175 (199)
..+++..+ -....+|+|.+||+|.++..+.+... ..+ .+.+|+ |..++.|+.+
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHhCC
Confidence 33444444 34457999999999999998877532 236 889997 6666666531
Q ss_pred C-----CceEEeCCCCCC--C--CcccEEEec
Q 037818 176 L-----GVTHIGGDTFKS--I--PAADAIFMK 198 (199)
Q Consensus 176 ~-----ri~~~~gd~f~~--~--P~aD~~~l~ 198 (199)
+ ++.+..+|.+.. . +..|+|+.+
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N 268 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATN 268 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEEC
Confidence 3 278999999962 2 235988864
No 281
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=94.40 E-value=0.015 Score=48.38 Aligned_cols=64 Identities=9% Similarity=-0.164 Sum_probs=49.9
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------------------CCceEEeCCCCCC--
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------------------LGVTHIGGDTFKS-- 188 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------------------~ri~~~~gd~f~~-- 188 (199)
..+|||+|+|+|.++..++++.|..+ ++.+|. |..++.++++ ++++++.+|..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 46999999999999999999999888 999998 6666665532 2388999998752
Q ss_pred -CCc-ccEEEe
Q 037818 189 -IPA-ADAIFM 197 (199)
Q Consensus 189 -~P~-aD~~~l 197 (199)
.+. .|+|++
T Consensus 127 ~~~~~fD~I~l 137 (378)
T 2dul_A 127 ERHRYFHFIDL 137 (378)
T ss_dssp HSTTCEEEEEE
T ss_pred hccCCCCEEEe
Confidence 233 488875
No 282
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=94.08 E-value=0.1 Score=42.95 Aligned_cols=54 Identities=7% Similarity=-0.062 Sum_probs=39.7
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccch----HHHhcCCCCCCceEEeCCCCC
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP----EVVGEAPSILGVTHIGGDTFK 187 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp----~v~~~a~~~~ri~~~~gd~f~ 187 (199)
...||+||.|.|.+...|+++...-+ .++++.. ..++.....+|++.+.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999999754445 6677752 222211135899999999975
No 283
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=94.07 E-value=0.13 Score=42.75 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=44.2
Q ss_pred cceEEEecCCccHHHHHH--------HHHC-------CCCCeeeeccchHH--------HhcCCC----------C-CC-
Q 037818 133 VKQLVDVGGSAGDCLRMI--------LQKH-------RFICEGINFDLPEV--------VGEAPS----------I-LG- 177 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l--------~~~~-------P~l~~~~v~Dlp~v--------~~~a~~----------~-~r- 177 (199)
.-+|+|+|||+|..+..+ .+++ |.++ ++.-|||.. ++..++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 578999999999866655 3344 8888 999999842 233221 0 11
Q ss_pred --ceEEeCCCCC-CCCcc--cEEEec
Q 037818 178 --VTHIGGDTFK-SIPAA--DAIFMK 198 (199)
Q Consensus 178 --i~~~~gd~f~-~~P~a--D~~~l~ 198 (199)
+.-++|.|+. -+|.. |+++-+
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss 157 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSA 157 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred eEEEecChhhhcccCCCcceEEEEec
Confidence 4567899997 58874 877643
No 284
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=94.06 E-value=0.058 Score=49.20 Aligned_cols=68 Identities=12% Similarity=0.000 Sum_probs=47.2
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCC---CCeeeeccc-hHHHhcC--C----C------CCCceEEeCCCCCC--CCc
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRF---ICEGINFDL-PEVVGEA--P----S------ILGVTHIGGDTFKS--IPA 191 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~---l~~~~v~Dl-p~v~~~a--~----~------~~ri~~~~gd~f~~--~P~ 191 (199)
+....+|+|.|||+|.++.+++++.+. .+ .+.+|. |..++.| + . .+...+...|++++ .+.
T Consensus 319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence 344579999999999999999998874 46 789997 5566555 2 1 12345667777762 222
Q ss_pred --ccEEEec
Q 037818 192 --ADAIFMK 198 (199)
Q Consensus 192 --aD~~~l~ 198 (199)
.|+|+.+
T Consensus 398 ~kFDVVIgN 406 (878)
T 3s1s_A 398 ANVSVVVMN 406 (878)
T ss_dssp TTEEEEEEC
T ss_pred CCCCEEEEC
Confidence 4988764
No 285
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=93.71 E-value=0.049 Score=43.36 Aligned_cols=44 Identities=16% Similarity=0.100 Sum_probs=33.9
Q ss_pred HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
...+.+.+- +....+|||||||.|.++.-+++..+-.+ ++.+|+
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~Gvdv 122 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTL 122 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEe
Confidence 345666664 67777999999999999999888777656 666665
No 286
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=93.43 E-value=0.037 Score=45.27 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=47.0
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC---------------------------CCCceEEeCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS---------------------------ILGVTHIGGD 184 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~---------------------------~~ri~~~~gd 184 (199)
+...||.+|||.......+...+|+++ .+=+|+|+|++.-++ .++.+++++|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 458999999999999999999999998 999999998764321 1689999999
Q ss_pred CCC
Q 037818 185 TFK 187 (199)
Q Consensus 185 ~f~ 187 (199)
+.+
T Consensus 176 L~d 178 (334)
T 1rjd_A 176 LND 178 (334)
T ss_dssp TTC
T ss_pred CCC
Confidence 987
No 287
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=93.43 E-value=0.039 Score=48.10 Aligned_cols=66 Identities=18% Similarity=0.101 Sum_probs=49.7
Q ss_pred CcceEEEecCCccHHHHHHHHHCC---CCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCC-CC---c--cc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHR---FICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKS-IP---A--AD 193 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~-~P---~--aD 193 (199)
...+|+|.+||+|.++.++.+... ..+ ...+|+ |.++..|+.+ +++.+..+|.+.. +| . .|
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 346999999999999999998853 556 889997 6666666531 4678999999963 33 2 49
Q ss_pred EEEec
Q 037818 194 AIFMK 198 (199)
Q Consensus 194 ~~~l~ 198 (199)
+|+.+
T Consensus 300 ~IvaN 304 (542)
T 3lkd_A 300 GVLMN 304 (542)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 98864
No 288
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=93.37 E-value=0.028 Score=49.08 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC---------------CCCeeeeccc-hHHHhcCCCC-------CC
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR---------------FICEGINFDL-PEVVGEAPSI-------LG 177 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P---------------~l~~~~v~Dl-p~v~~~a~~~-------~r 177 (199)
..+++..+ -.. .+|+|.+||+|.++.++.+..+ ..+ ...+|+ |.++..|+.+ .+
T Consensus 235 ~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 235 TLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 34444443 222 4999999999999998866443 456 788997 6667666532 34
Q ss_pred ceEEeCCCCC-C-CCc--ccEEEec
Q 037818 178 VTHIGGDTFK-S-IPA--ADAIFMK 198 (199)
Q Consensus 178 i~~~~gd~f~-~-~P~--aD~~~l~ 198 (199)
|.+..+|.+. + .+. .|+|+.+
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~N 336 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTN 336 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred cceeccchhcCcccccccccEEEEC
Confidence 5558899885 3 333 4988864
No 289
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=92.14 E-value=0.11 Score=41.18 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=26.9
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC 158 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~ 158 (199)
.+.+..- +....+|||+|||.|.++.-+++..+--+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~ 100 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSG 100 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEE
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCc
Confidence 4444443 66667999999999999998887765444
No 290
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.92 E-value=0.034 Score=35.55 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=31.1
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .|..|++|||+.+++ ++. -++|-|+.|...|
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~V--S~~--TIRrdL~~Le~~G 44 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNT--PQP--MINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345555 489999999999999 776 8999999998877
No 291
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.85 E-value=0.032 Score=36.46 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=31.7
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .|..|+.|||+.+++ ++. -++|.|+.|...|
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~V--S~~--TIRrDL~~Le~~G 44 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQT--PQP--LIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTC--CHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445555 489999999999999 776 8999999999988
No 292
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=91.55 E-value=0.11 Score=34.35 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=33.7
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.+++.|+.|||+.+|+ ++. .+.+-|+.|...|
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l~i--s~~--tvs~~L~~L~~~G 64 (102)
T 3pqk_A 25 RLMLVCTLVEGEFSVGELEQQIGI--GQP--TLSQQLGVLRESG 64 (102)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHTC--CTT--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 344666677799999999999999 666 8999999999888
No 293
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=91.43 E-value=0.32 Score=39.10 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHh----cCCCC--CCceEEeC-CCCC--CCCc
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVG----EAPSI--LGVTHIGG-DTFK--SIPA 191 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~----~a~~~--~ri~~~~g-d~f~--~~P~ 191 (199)
..+.+.+. +.....||||||++|.++.-++....--+ +..+|+-..-- ..++. .-|+++.+ |++. +.|
T Consensus 84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~- 160 (321)
T 3lkz_A 84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC- 160 (321)
T ss_dssp HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC-
T ss_pred HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC-
Confidence 45555554 66667999999999999997766665556 88888732211 11111 34888888 8764 333
Q ss_pred ccEEEe
Q 037818 192 ADAIFM 197 (199)
Q Consensus 192 aD~~~l 197 (199)
.|+++.
T Consensus 161 ~D~ivc 166 (321)
T 3lkz_A 161 CDTLLC 166 (321)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 477764
No 294
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=91.00 E-value=0.075 Score=34.92 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=34.2
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.+++.|+.|||+.+|+ ++. .+.+-|+.|...|
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l~i--s~~--tvs~~L~~L~~~G 64 (98)
T 3jth_A 25 RLQILCMLHNQELSVGELCAKLQL--SQS--ALSQHLAWLRRDG 64 (98)
T ss_dssp HHHHHHHTTTSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 455777788899999999999999 655 8999999999888
No 295
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=91.00 E-value=0.071 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=33.0
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|+..| +++.|+.|||+.+++ ++. .+.+.|+.|...|
T Consensus 33 r~~Il~~L-~~~~~~~eLa~~l~i--s~~--tv~~~L~~L~~~G 71 (96)
T 1y0u_A 33 RRKILRML-DKGRSEEEIMQTLSL--SKK--QLDYHLKVLEAGF 71 (96)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 34577778 889999999999999 655 8999999999887
No 296
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=90.51 E-value=0.067 Score=36.09 Aligned_cols=40 Identities=20% Similarity=-0.042 Sum_probs=33.7
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.+++.|+.|||+.+|+ ++. .+.+.|+.|...|
T Consensus 27 r~~IL~~L~~~~~s~~eLa~~lgi--s~s--tvs~~L~~L~~~G 66 (108)
T 2kko_A 27 RLQILDLLAQGERAVEAIATATGM--NLT--TASANLQALKSGG 66 (108)
T ss_dssp THHHHHHHTTCCEEHHHHHHHHTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345667777889999999999999 665 8999999999888
No 297
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.07 E-value=0.78 Score=38.19 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=40.6
Q ss_pred CchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-------CCCCeeeeccchHHHh
Q 037818 101 MPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-------RFICEGINFDLPEVVG 170 (199)
Q Consensus 101 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------P~l~~~~v~Dlp~v~~ 170 (199)
.|+....|-+.++.+- +..| +... ....-.||++|.|+|.++..+++.. ..++ ..+++..+.+.
T Consensus 54 apeis~~FGe~la~~~---~~~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp~Lr 124 (387)
T 1zkd_A 54 SPEISQMFGELLGLWS---ASVW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLR 124 (387)
T ss_dssp HHHHCHHHHHHHHHHH---HHHH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHH
T ss_pred CCchHHHHHHHHHHHH---HHHH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCHHHH
Confidence 3667777877765332 2222 2232 3344579999999999999888752 3446 77888754433
No 298
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=89.83 E-value=0.18 Score=42.04 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=43.4
Q ss_pred cceEEEecCCccHHHHHHHHH-----------------CCCCCeeeeccch-----------HHH-hc-----CCCCCC-
Q 037818 133 VKQLVDVGGSAGDCLRMILQK-----------------HRFICEGINFDLP-----------EVV-GE-----APSILG- 177 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~-----------------~P~l~~~~v~Dlp-----------~v~-~~-----a~~~~r- 177 (199)
.-+|+|+||++|..+..++.. .|.++ ++.-||| +.. +. ....+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence 678999999999877766655 57888 9999998 111 11 111122
Q ss_pred -ceEEeCCCCC-CCCcc--cEEEe
Q 037818 178 -VTHIGGDTFK-SIPAA--DAIFM 197 (199)
Q Consensus 178 -i~~~~gd~f~-~~P~a--D~~~l 197 (199)
+.-++|.|++ -+|.. |+++-
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~S 155 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHS 155 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEE
T ss_pred EEEecchhhhhccCCCCceEEEEe
Confidence 3556899997 58884 87764
No 299
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.80 E-value=0.06 Score=33.16 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=32.2
Q ss_pred ccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|.+.|.+ .++|..|||+.+|+ +.. .+.+.+..|...|
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl--sr~--tv~~~l~~L~~~G 53 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV--PKK--TLNQVLYRLKKED 53 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3456677753 68999999999999 554 8999999998876
No 300
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=89.60 E-value=0.18 Score=40.20 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=31.6
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS 174 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~ 174 (199)
....|||++||+|..+.++++.. -+ ++.+|+ |..++.+++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g--~~-~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWG--RR-ALGVELVPRYAQLAKE 275 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence 34699999999999999988865 46 899998 455665553
No 301
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.52 E-value=0.076 Score=33.75 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=30.4
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .++.|..|||+.+|+ ++. .+.+.|+.|...|
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgv--s~~--tv~r~L~~L~~~G 42 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAV--TDY--QARYYLLLLEKAG 42 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 455554 478999999999999 655 8999999999877
No 302
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=89.47 E-value=0.16 Score=35.08 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=32.3
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.+++.++.+||+.+|+ ++. .+.+.|+.|...|
T Consensus 48 rl~IL~~L~~~~~s~~ela~~lgi--s~s--tvs~~L~~Le~~G 87 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAIGV--SES--AVSHQLRSLRNLR 87 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445677777788999999999999 555 7888888888888
No 303
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=89.25 E-value=0.32 Score=38.96 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
.+.+. ..+....+||||||++|.|+.-+++..+-.. ++.+|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdl 113 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTL 113 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECC
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEe
Confidence 44444 4456779999999999999999998776555 666666
No 304
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.19 E-value=0.092 Score=33.85 Aligned_cols=42 Identities=10% Similarity=-0.012 Sum_probs=32.8
Q ss_pred hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.....|.+.|...+.|+.|||+++|+ +.. .+++.|..|...|
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~Lgi--Sk~--aVr~~L~~Le~eG 58 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLNM--EKR--EVNKALYDLQRSA 58 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSSS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 34445667777644999999999999 554 8999999998777
No 305
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=89.19 E-value=0.092 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=33.2
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.+++.|+.|||+.+|+ ++. .+.+.|+.|...|
T Consensus 28 r~~IL~~L~~~~~~~~ela~~l~i--s~s--tvs~~L~~L~~~G 67 (106)
T 1r1u_A 28 RIRIMELLSVSEASVGHISHQLNL--SQS--NVSHQLKLLKSVH 67 (106)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445666676788999999999999 655 8999999999888
No 306
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.13 E-value=0.12 Score=33.63 Aligned_cols=40 Identities=13% Similarity=-0.045 Sum_probs=33.0
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.+ ++.|..|||+.+|+ ++. .+.+.|+.|...|
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l~i--s~~--tvs~~l~~L~~~g 66 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGL--SAS--ATSQHLARMRDEG 66 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4456667766 48999999999999 665 8999999999888
No 307
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=88.80 E-value=0.16 Score=32.16 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=33.1
Q ss_pred hccccccccCC---CCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN---TPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~---g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.-|.+.|.+ ++.|++||++.+ ++ +.. -++|.|+.|+..|
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i--s~~--TVyR~L~~L~~~G 66 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI--GLA--TVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC--CHh--hHHHHHHHHHHCC
Confidence 34557777764 689999999999 78 555 8999999999887
No 308
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=88.66 E-value=0.1 Score=35.06 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=33.7
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.+++.|+.+||+.+|+ ++. .+.+.|+.|...|
T Consensus 23 r~~IL~~L~~~~~~~~ela~~l~i--s~~--tv~~~l~~L~~~g 62 (114)
T 2oqg_A 23 RWEILTELGRADQSASSLATRLPV--SRQ--AIAKHLNALQACG 62 (114)
T ss_dssp HHHHHHHHHHSCBCHHHHHHHSSS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445666775689999999999999 665 8999999999998
No 309
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=88.62 E-value=0.088 Score=41.36 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=26.0
Q ss_pred CcceEEEecCCccHHHHHHHHH-------CCC-----CCeeeeccc
Q 037818 132 GVKQLVDVGGSAGDCLRMILQK-------HRF-----ICEGINFDL 165 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~-------~P~-----l~~~~v~Dl 165 (199)
+..+|++||.|+|.-+..+++. +|+ ++ .+.++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~ 104 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEK 104 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEEC
Confidence 4579999999999988776665 684 56 787875
No 310
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=87.59 E-value=0.1 Score=35.64 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=34.5
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.++|.|+.+||+.+|+ ++. .+.+-|+.|...|
T Consensus 20 R~~Il~~L~~~~~~~~eLa~~l~i--s~~--tvs~hL~~L~~~G 59 (118)
T 3f6o_A 20 RRAVLGRLSRGPATVSELAKPFDM--ALP--SFMKHIHFLEDSG 59 (118)
T ss_dssp HHHHHHHHHTCCEEHHHHHTTCCS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence 455677777899999999999999 655 8999999999999
No 311
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=86.34 E-value=0.32 Score=39.21 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=42.5
Q ss_pred CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccchHHHhcCCC---------CCCceEEeCCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVGEAPS---------ILGVTHIGGDTFK 187 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp~v~~~a~~---------~~ri~~~~gd~f~ 187 (199)
.+...||+||||-=..+..+. +| +++ .+-+|+|.|++..++ .++..++++|+.+
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 345789999999988876665 35 477 899999999876542 3789999999986
No 312
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=86.24 E-value=0.3 Score=38.89 Aligned_cols=65 Identities=18% Similarity=0.070 Sum_probs=44.4
Q ss_pred CcceEEEecCCccHHHHHHHHHC-----CCCCeeeeccc----hH-----------------------HHhcCCC-----
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKH-----RFICEGINFDL----PE-----------------------VVGEAPS----- 174 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~~v~Dl----p~-----------------------v~~~a~~----- 174 (199)
....||+||...|..+..+++.. |+-+ ++.+|. |+ .++.+++
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 34799999999999887776654 5777 888883 22 1122222
Q ss_pred ---CCCceEEeCCCCCCCCc-----ccEEEe
Q 037818 175 ---ILGVTHIGGDTFKSIPA-----ADAIFM 197 (199)
Q Consensus 175 ---~~ri~~~~gd~f~~~P~-----aD~~~l 197 (199)
.++|+++.||+.+.+|. -|++++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI 215 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM 215 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence 27899999999864432 277765
No 313
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=86.11 E-value=0.17 Score=34.85 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=33.4
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|. +++.|+.+||+.+|+ ++. .+.+.|+.|...|
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~i--s~s--tvs~~L~~L~~~G 84 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGV--TIA--NASHHLRTLYKQG 84 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445677776 689999999999999 665 8999999999888
No 314
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=86.06 E-value=0.35 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+|.|+.|||+.+|+ ++. .+++-|..|...|
T Consensus 23 ~~psv~EIa~~lgv--S~~--TVrr~L~~Le~kG 52 (77)
T 2jt1_A 23 APVKTRDIADAAGL--SIY--QVRLYLEQLHDVG 52 (77)
T ss_dssp SCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 78999999999999 665 7899999999888
No 315
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=85.84 E-value=0.13 Score=35.16 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=32.8
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.+++.++.|||+.+|+ ++. .+.+.|+.|...|
T Consensus 23 r~~IL~~L~~~~~~~~eLa~~lgi--s~s--tvs~~L~~L~~~G 62 (118)
T 2jsc_A 23 RCRILVALLDGVCYPGQLAAHLGL--TRS--NVSNHLSCLRGCG 62 (118)
T ss_dssp HHHHHHHHHTTCCSTTTHHHHHSS--CHH--HHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345666676788999999999999 655 8899999999888
No 316
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=85.70 E-value=0.53 Score=32.45 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|..+||+++++ ++. .++++|+.|...|
T Consensus 24 ~~~~s~~ela~~~~i--~~~--~v~~il~~L~~~G 54 (129)
T 2y75_A 24 EGPTSLKSIAQTNNL--SEH--YLEQLVSPLRNAG 54 (129)
T ss_dssp SCCBCHHHHHHHTTS--CHH--HHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 468999999999999 665 9999999999999
No 317
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.68 E-value=0.2 Score=33.56 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=31.7
Q ss_pred hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+.+.||+..|.+|..|..|||+.+|+ +.. .+.|+=++|-
T Consensus 45 ~~R~~l~~~L~~ge~TQREIA~~lGi--S~s--tISRi~r~L~ 83 (101)
T 1jhg_A 45 GTRVRIIEELLRGEMSQRELKNELGA--GIA--TITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHCC--CHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCC--Chh--hhhHHHHHHH
Confidence 45688988888889999999999999 555 7777766664
No 318
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=85.38 E-value=0.46 Score=31.71 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=32.0
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+++.+..|||+.+ ++ ++. .+.+.|+.|...|
T Consensus 19 IL~~L~~~~~~~~eLa~~l~~i--s~~--tls~~L~~Le~~G 56 (107)
T 2hzt_A 19 ILXHLTHGKKRTSELKRLMPNI--TQK--MLTQQLRELEADG 56 (107)
T ss_dssp HHHHHTTCCBCHHHHHHHCTTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHhcCC--CHH--HHHHHHHHHHHCC
Confidence 4455667899999999999 99 665 8999999999999
No 319
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=85.12 E-value=0.24 Score=38.81 Aligned_cols=39 Identities=10% Similarity=0.024 Sum_probs=33.3
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ +++|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl--~ks--T~~RlL~tL~~~G 49 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM--NKA--TVYRLMSELQEAG 49 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 346777764 68999999999999 555 8999999999999
No 320
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=85.02 E-value=0.24 Score=39.19 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=31.0
Q ss_pred ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|.+.|.+ +++|+.|||+++|+ +.. -+.|+|..|+..|
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl--~ks--Tv~RlL~tL~~~G 73 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDL--PKS--SAHGLLAVMTELD 73 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC--C----CHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 35666653 57999999999999 655 8999999999999
No 321
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.81 E-value=0.26 Score=32.27 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=32.1
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|...|. .++.|..+||+.+++ ++. .+.+.|+.|...|
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l~i--s~~--tv~~~l~~L~~~g 62 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIARELDL--SAR--FVRDRLKVLLKRG 62 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 344555665 378999999999999 665 8999999999988
No 322
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.78 E-value=0.21 Score=32.07 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=30.4
Q ss_pred ccccccccCC-C---CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-T---PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g---~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.-|.+.|.+ + ++|+.+||+++|+ +.. .+++.|.-|...|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv--sr~--tV~~~L~~Le~~G 55 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT--PKK--EINRVLYSLAKKG 55 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3345566643 5 7999999999999 543 7888888888777
No 323
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=83.69 E-value=0.24 Score=35.62 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=34.5
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.+++.|+.+||+.+|+ +.. .+.+-|+.|...|
T Consensus 60 R~~IL~~L~~~~~t~~eLa~~lgl--s~s--tvs~hL~~L~~aG 99 (151)
T 3f6v_A 60 RRRLVQLLTSGEQTVNNLAAHFPA--SRS--AISQHLRVLTEAG 99 (151)
T ss_dssp HHHHHHHGGGCCEEHHHHHTTSSS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 456777777899999999999999 655 8999999999999
No 324
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.50 E-value=0.15 Score=32.34 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=28.8
Q ss_pred ccccccCC-C---CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-T---PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g---~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|...|.+ + +.|+.|||+++|+ +.. .+.+.|.-|...|
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgv--s~~--tV~~~L~~L~~~G 59 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGT--PKK--EINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45555543 4 7999999999999 544 7888888887666
No 325
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.24 E-value=0.22 Score=33.76 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=32.9
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.++..|.+++.|+.+||+.+++ ++. .+.+.|+.|...|
T Consensus 34 ~~~il~~L~~~~~s~~ela~~l~i--s~s--tvsr~l~~Le~~G 73 (119)
T 2lkp_A 34 RLMILTQLRNGPLPVTDLAEAIGM--EQS--AVSHQLRVLRNLG 73 (119)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHSS--CHH--HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445666676678999999999999 665 8999999998888
No 326
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=82.70 E-value=0.39 Score=34.06 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=35.0
Q ss_pred chhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...+..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 51 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNT--TRQ--RIARRIDKLKKLG 51 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTS--CHH--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345566777775 588999999999999 665 8899999998888
No 327
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=82.57 E-value=0.57 Score=35.01 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=34.4
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|...|.+++.|..+||+.+|+ ++. .+.+-++.|...|
T Consensus 22 ~~~IL~~L~~~~~s~~eLA~~lgl--S~s--tv~~~l~~Le~~G 61 (192)
T 1uly_A 22 RRKILKLLRNKEMTISQLSEILGK--TPQ--TIYHHIEKLKEAG 61 (192)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445667777899999999999999 665 8999999999998
No 328
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=82.56 E-value=0.58 Score=33.02 Aligned_cols=41 Identities=20% Similarity=0.077 Sum_probs=34.1
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~lg~--s~~--tv~~~l~~L~~~G 45 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREIRI--PKA--TLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3455677776 478999999999999 665 8999999999888
No 329
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=82.21 E-value=0.87 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|+++||+++++ ++. .++++|..|...|
T Consensus 42 ~~~~s~~eIA~~~~i--~~~--~l~kil~~L~~aG 72 (159)
T 3lwf_A 42 DGPISLRSIAQDKNL--SEH--YLEQLIGPLRNAG 72 (159)
T ss_dssp SCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 368999999999999 766 9999999999999
No 330
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=82.21 E-value=0.62 Score=36.33 Aligned_cols=39 Identities=5% Similarity=-0.015 Sum_probs=32.8
Q ss_pred cccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|. +++.|+.|||+++|+ +.. .+.|+|..|...|
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl--~ks--tv~r~l~tL~~~G 66 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL--PKT--TVVRLVATMCARS 66 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 34667775 368999999999999 554 8999999999999
No 331
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.64 E-value=0.67 Score=32.06 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=33.0
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.++..|..++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 39 ~~~iL~~l~~~~~~~~ela~~l~~--s~~--tvs~~l~~Le~~g 78 (146)
T 2gxg_A 39 DFLVLRATSDGPKTMAYLANRYFV--TQS--AITASVDKLEEMG 78 (146)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCcCHHHHHHHhCC--Cch--hHHHHHHHHHHCC
Confidence 334455555778999999999999 665 8999999999999
No 332
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.59 E-value=0.31 Score=30.75 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=34.8
Q ss_pred CcchhccccccccC-CCCCCHHHHHHHcCCCC--CCCcchHHHHHHHHhhCC
Q 037818 3 DNECREGGKKVRLA-NTPLSASQILTRILPSG--DGDAENLQRILRLLTSYG 51 (199)
Q Consensus 3 ~~~A~~lglf~~L~-~g~~t~~eLA~~~~~~~--~~~~~~l~rlL~~l~~~g 51 (199)
+.+..+..|...|. .++.|+.||++.++.+. ++. .+.++|+-|...|
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~--Tv~~~l~rL~~kG 55 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPK--TIQTMLLRLIKKG 55 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHH--HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHH--HHHHHHHHHHHCC
Confidence 34555666777775 48899999999997300 333 7899999999888
No 333
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=81.35 E-value=0.39 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=29.5
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.+.|. .||.|+.+||+.+|+ ++. ..+++-|..|...|
T Consensus 16 IL~~Lk~~g~~ta~eiA~~Lgi--t~~-~aVr~hL~~Le~eG 54 (79)
T 1xmk_A 16 ICDYLFNVSDSSALNLAKNIGL--TKA-RDINAVLIDMERQG 54 (79)
T ss_dssp HHHHHHHTCCEEHHHHHHHHCG--GGH-HHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCcCHHHHHHHcCC--CcH-HHHHHHHHHHHHCC
Confidence 445565 489999999999999 432 16888898888777
No 334
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=81.20 E-value=1.4 Score=27.74 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=29.9
Q ss_pred ccccccCCCC-CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLANTP-LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~g~-~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++.|.++. .|+.+||+++|+ + +..+.|+|--|...|
T Consensus 19 ~~i~~L~~~~~~Ta~~IAkkLg~--s--K~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 19 KEVLSLNTNDYTTAISLSNRLKI--N--KKKINQQLYKLQKED 57 (75)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTC--C--HHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCcchHHHHHHHHHCC--C--HHHHHHHHHHHHHCC
Confidence 3466777755 999999999999 3 337889888888777
No 335
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=81.14 E-value=1.7 Score=36.23 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCcceEEEecCCccHHHHHHH-HHCCC-CCeeeeccc-hHHHhc
Q 037818 131 KGVKQLVDVGGSAGDCLRMIL-QKHRF-ICEGINFDL-PEVVGE 171 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~-~~~P~-l~~~~v~Dl-p~v~~~ 171 (199)
.....++|||++.|.++..++ +..+. .+ ++.|+- |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHHHH
Confidence 566899999999999999988 67876 56 888884 544433
No 336
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.99 E-value=0.73 Score=31.89 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=33.9
Q ss_pred hccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..+...|..++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 39 ~~~~iL~~l~~~~~t~~eLa~~l~~--s~~--tvs~~l~~L~~~G 79 (146)
T 3tgn_A 39 TQEHILMLLSEESLTNSELARRLNV--SQA--AVTKAIKSLVKEG 79 (146)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3455666777655999999999999 665 8999999999999
No 337
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=80.96 E-value=0.6 Score=33.02 Aligned_cols=42 Identities=24% Similarity=0.094 Sum_probs=34.9
Q ss_pred hhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 6 CREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 6 A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 7 ~~~~~iL~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 49 (150)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRAGL--SVS--AVQSRVRRLESRG 49 (150)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 34556667775 589999999999999 665 8999999999999
No 338
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=80.89 E-value=0.69 Score=35.98 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=33.0
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl--~~s--tv~r~l~~L~~~G 57 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL--SRP--AVRRILLTLQKLG 57 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 446777763 68999999999999 555 8999999999999
No 339
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=80.86 E-value=0.73 Score=30.07 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|..|||+.+|+ +.. .+.+.|+.|...|
T Consensus 34 ~~~~t~~ela~~l~i--s~~--tv~~~l~~L~~~g 64 (109)
T 2d1h_A 34 EKPITSEELADIFKL--SKT--TVENSLKKLIELG 64 (109)
T ss_dssp CSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 578999999999999 655 8999999999888
No 340
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=80.42 E-value=0.78 Score=33.03 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=33.8
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++..|...|. ++++|..+||+++|+ ++. .+.+-++-|...|
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~--s~~--tv~~rl~~L~~~g 45 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGL--STT--PCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3455677776 589999999999999 666 8888899888888
No 341
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=80.21 E-value=0.75 Score=30.96 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=31.6
Q ss_pred cccccCCCCCC--HHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLS--ASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t--~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+|+.+ +.||++.+ |+ ++. .+.+.|+.|...|
T Consensus 32 IL~~L~~g~~~~~~~eL~~~l~gi--s~~--~ls~~L~~Le~~G 71 (111)
T 3df8_A 32 IISVLGNGSTRQNFNDIRSSIPGI--SST--ILSRRIKDLIDSG 71 (111)
T ss_dssp HHHHHTSSSSCBCHHHHHHTSTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCCHHHHHHHccCC--CHH--HHHHHHHHHHHCC
Confidence 45566678888 99999999 99 665 8999999999999
No 342
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=79.67 E-value=0.79 Score=31.72 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 16 ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 16 ~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+++.|..+||+.+|+ ++. .+.++|+.|...|
T Consensus 38 ~~~~~t~~ela~~l~~--~~s--tvs~~l~~L~~~G 69 (152)
T 1ku9_A 38 SDKPLTISDIMEELKI--SKG--NVSMSLKKLEELG 69 (152)
T ss_dssp CSSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4689999999999999 665 8999999999999
No 343
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.62 E-value=0.64 Score=32.68 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=34.1
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. +++.|..|||+++|+ ++. .+.+.++.|...|
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 47 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKL--SPP--SVTERVRQLESFG 47 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3455666775 588999999999999 665 8999999999999
No 344
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=79.55 E-value=0.27 Score=31.94 Aligned_cols=40 Identities=25% Similarity=0.194 Sum_probs=33.0
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|. +++.|..+||+.+++ ++. .+.+.|+.|...|
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~l~i--s~~--tvs~~l~~L~~~g 58 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKVLDL--TPG--NLDSHIRVLERNG 58 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 455666664 478999999999999 665 8999999999888
No 345
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=79.46 E-value=0.41 Score=32.60 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=34.6
Q ss_pred hccccccccCC-CCCCHHHHHHHc--CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-TPLSASQILTRI--LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g~~t~~eLA~~~--~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+-.|...|.+ |+.|+.+||+.+ ++ ++. .+.+-|+.|...|
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi--S~~--aVs~rL~~Le~~G 57 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELEDRDEIRI--SKS--SVSRRLKKLADHD 57 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHTSTTCCS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcCC--CHH--HHHHHHHHHHHCC
Confidence 45567778865 999999999999 88 655 8999999999998
No 346
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=79.45 E-value=0.87 Score=32.20 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+++||+++++ ++. .++++|..|...|
T Consensus 27 ~~~s~~~IA~~~~i--~~~--~l~kil~~L~~aG 56 (143)
T 3t8r_A 27 GCISLKSIAEENNL--SDL--YLEQLVGPLRNAG 56 (143)
T ss_dssp CCEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 58999999999999 766 9999999999999
No 347
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=79.09 E-value=1.4 Score=31.94 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|.++||+++++ ++. .++++|..|...|
T Consensus 26 ~~~~s~~~IA~~~~i--s~~--~l~kil~~L~~aG 56 (162)
T 3k69_A 26 DSKVASRELAQSLHL--NPV--MIRNILSVLHKHG 56 (162)
T ss_dssp TSCBCHHHHHHHHTS--CGG--GTHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 468999999999999 776 9999999999999
No 348
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=78.93 E-value=0.78 Score=30.51 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=30.9
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+++.+..||++.+ |+ ++. .+.+.|+.|...|
T Consensus 30 IL~~L~~~~~~~~eL~~~l~gi--s~~--~ls~~L~~Le~~G 67 (107)
T 2fsw_A 30 IIFQINRRIIRYGELKRAIPGI--SEK--MLIDELKFLCGKG 67 (107)
T ss_dssp HHHHHTTSCEEHHHHHHHSTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHhCCcCHHHHHHHcccC--CHH--HHHHHHHHHHHCC
Confidence 4445567899999999999 49 655 8999999999999
No 349
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=78.91 E-value=0.55 Score=36.75 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=32.8
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|..|+..|
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl--~~s--tv~r~l~tL~~~G 64 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL--TRA--TARRFLLTLVELG 64 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 346777763 68999999999999 555 8999999999988
No 350
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=78.85 E-value=0.9 Score=32.28 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|+++||+++++ ++. .++++|..|...|
T Consensus 28 ~~~~~~~~iA~~~~i--~~~--~l~kil~~L~~~G 58 (149)
T 1ylf_A 28 SSLCTSDYMAESVNT--NPV--VIRKIMSYLKQAG 58 (149)
T ss_dssp GGGCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 468999999999999 766 9999999999998
No 351
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=78.57 E-value=0.88 Score=32.60 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=34.0
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. +++.|..|||+++|+ ++. .+.+.++.|...|
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 52 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVAL--SPS--PCLRRLKQLEDAG 52 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4455666775 588999999999999 665 8999999999998
No 352
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=78.53 E-value=0.25 Score=40.76 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=41.8
Q ss_pred CCcceEEEecCCccHHHH--------HHHHH--------CCCCCeeeeccchHH-----HhcCCC---CCC---ceEEeC
Q 037818 131 KGVKQLVDVGGSAGDCLR--------MILQK--------HRFICEGINFDLPEV-----VGEAPS---ILG---VTHIGG 183 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~--------~l~~~--------~P~l~~~~v~Dlp~v-----~~~a~~---~~r---i~~~~g 183 (199)
.+.-+|+|+||++|..+. .+.++ .|.++ ++.-|||.. -..... ..+ +.-++|
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~-v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg 128 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE-EEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence 455789999999996333 33332 57777 899999832 222111 112 455689
Q ss_pred CCCC-CCCcc--cEEEe
Q 037818 184 DTFK-SIPAA--DAIFM 197 (199)
Q Consensus 184 d~f~-~~P~a--D~~~l 197 (199)
.|++ -+|.. |+++-
T Consensus 129 SFy~rlfp~~S~d~v~S 145 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHS 145 (359)
T ss_dssp CSSSCCSCTTCBSCEEE
T ss_pred hhhhccCCCCceEEEEe
Confidence 9997 58874 77653
No 353
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.51 E-value=0.94 Score=31.76 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=33.1
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..++..|.. ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l~i--~~~--tvs~~l~~Le~~G 85 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLSLM--EQS--RMTRIVDQMDARG 85 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3445566654 78999999999999 655 8999999999999
No 354
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=78.17 E-value=0.5 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=30.7
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+++.+..+||+.+ ++ ++. .+.+.|+-|...|
T Consensus 27 IL~~L~~~~~~~~eLa~~l~~i--s~~--tvs~~L~~Le~~G 64 (112)
T 1z7u_A 27 LMDELFQGTKRNGELMRALDGI--TQR--VLTDRLREMEKDG 64 (112)
T ss_dssp HHHHHHHSCBCHHHHHHHSTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHhccC--CHH--HHHHHHHHHHHCC
Confidence 3344556899999999999 99 665 8999999999999
No 355
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=77.63 E-value=1.2 Score=31.05 Aligned_cols=37 Identities=14% Similarity=-0.032 Sum_probs=31.5
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.-.|.+|+.+..||++.+ |+ ++. .|.+.|+-|...|
T Consensus 31 IL~~L~~g~~rf~eL~~~l~gI--s~~--~Ls~~L~~Le~~G 68 (131)
T 4a5n_A 31 LFYHMIDGKKRFNEFRRICPSI--TQR--MLTLQLRELEADG 68 (131)
T ss_dssp HHHHHTTSCBCHHHHHHHCTTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHhcCCcCHHHHHHHhccc--CHH--HHHHHHHHHHHCC
Confidence 3345567999999999999 99 665 8999999999999
No 356
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=77.60 E-value=1.1 Score=30.76 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=30.3
Q ss_pred ccccccccC--CCC-CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA--NTP-LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~--~g~-~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|...|. .+| +|+.|||+.+++ +.. .+.|.|+.|...|
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~--s~s--TV~r~L~~L~~~G 70 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL--DVS--TVQRSVKKLHEKE 70 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 334555554 245 899999999999 555 8899999999888
No 357
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=77.29 E-value=0.85 Score=32.71 Aligned_cols=52 Identities=8% Similarity=-0.057 Sum_probs=34.3
Q ss_pred CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CC---Cc--ccEEEec
Q 037818 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SI---PA--ADAIFMK 198 (199)
Q Consensus 130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~---P~--aD~~~l~ 198 (199)
.....+|+|||||.. .+|. |..++.+++. .+++++.+|+.+ +. |. .|+++..
T Consensus 10 ~~~g~~vL~~~~g~v-----------------~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSS-----------------PVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEEEEEECTTS-----------------CHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEecCCce-----------------eeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 566689999999851 2564 4555555542 358888888875 33 44 2888764
No 358
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.72 E-value=0.89 Score=29.52 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=33.1
Q ss_pred ccccccccCC-CCCCHHHH----HHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQI----LTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eL----A~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..++..|.+ ++.|..+| |+.+++ ++. .+.++++.|...|
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~i--s~~--tvs~~l~~Le~~g 54 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPM--STA--TFYDAKKFLIQEG 54 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCC--CHH--HHHHHHHHHHHCC
Confidence 4456666764 78999999 899999 665 8999999999998
No 359
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=76.71 E-value=0.62 Score=35.91 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=31.7
Q ss_pred ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|..|...|
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl--~~s--tv~r~l~~L~~~G 49 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL--PRS--TVQRIINALEEEF 49 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS--CHH--HHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45666653 47999999999999 554 8999999999999
No 360
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=76.56 E-value=0.64 Score=31.86 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=32.8
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.++..|. .++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 40 ~~~iL~~l~~~~~~t~~ela~~l~~--~~~--tvs~~l~~L~~~g 80 (140)
T 2nnn_A 40 QWAALVRLGETGPCPQNQLGRLTAM--DAA--TIKGVVERLDKRG 80 (140)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 344555664 378999999999999 665 8999999999999
No 361
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=76.48 E-value=1 Score=31.88 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=29.7
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|.+|+.+..||++.+++ ++. .+.+.|+.|...|
T Consensus 31 ~~L~~g~~~~~eLa~~lgi--s~~--tls~~L~~Le~~G 65 (146)
T 2f2e_A 31 RDAFEGLTRFGEFQKSLGL--AKN--ILAARLRNLVEHG 65 (146)
T ss_dssp HHHHTTCCSHHHHHHHHCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 3445689999999999999 655 8999999999999
No 362
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.26 E-value=2.5 Score=29.00 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=30.7
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 39 ~~~vL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~L~~~G 79 (142)
T 3ech_A 39 DVHVLKLIDEQRGLNLQDLGRQMCR--DKA--LITRKIRELEGRN 79 (142)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHC-----C--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 334555555 478999999999999 776 9999999999999
No 363
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=76.18 E-value=0.9 Score=33.11 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=33.9
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~lgl--S~~--tv~~~l~~L~~~G 59 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQLKK--PES--TIHFRIKKLQERG 59 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4455666675 588999999999999 666 8999999999998
No 364
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=75.55 E-value=0.73 Score=35.64 Aligned_cols=39 Identities=15% Similarity=0.057 Sum_probs=32.0
Q ss_pred cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|.+.|.+ ++.|+.|||+++|+ +.. .+.|+|+.|...|
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl--~~s--tv~r~l~~L~~~G 51 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM--SVS--NAYKYMVVLEEKG 51 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345666653 47999999999999 555 8999999999999
No 365
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=75.50 E-value=0.76 Score=32.54 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=33.5
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 49 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGL--AES--TIHERIRKLRESG 49 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4455666775 588999999999999 665 8889999998888
No 366
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.25 E-value=1.2 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=32.9
Q ss_pred cccccccc-C-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRL-A-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L-~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+...| . .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~--s~~--~vs~~l~~L~~~g 80 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGV--EGP--TLARLLDGLESQG 80 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC--Chh--hHHHHHHHHHHCC
Confidence 34455566 3 588999999999999 665 8999999999999
No 367
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=75.23 E-value=4.3 Score=30.50 Aligned_cols=52 Identities=6% Similarity=-0.075 Sum_probs=34.6
Q ss_pred CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---------CCCceEEeCCCC
Q 037818 131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---------ILGVTHIGGDTF 186 (199)
Q Consensus 131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---------~~ri~~~~gd~f 186 (199)
.+.++||+||+| . +..++.+.++-+ .+-+|. |+-.+.+++ .+||+++.||..
T Consensus 29 ~~a~~VLEiGtG--y-STl~lA~~~~g~-VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 29 EEAEVILEYGSG--G-STVVAAELPGKH-VTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp HHCSEEEEESCS--H-HHHHHHTSTTCE-EEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred hCCCEEEEECch--H-HHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 456899999985 3 444444456666 877884 555555543 358999999954
No 368
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=75.11 E-value=1 Score=32.89 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=33.4
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. ++..|..|||+++|+ ++. .+.+-++.|...|
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~lgl--S~~--tv~~rl~~L~~~G 69 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKITGL--AES--TIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 4455666675 588999999999999 665 8889999999888
No 369
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=75.11 E-value=0.85 Score=31.52 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=32.7
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~L~~~G 78 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFL--DSG--TLTPLLKKLEKKD 78 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC--Chh--hHHHHHHHHHHCC
Confidence 34555665 488999999999999 665 8999999999999
No 370
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=74.82 E-value=3.1 Score=28.84 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=32.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|..++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 41 ~~iL~~l~~~~~t~~eLa~~l~~--~~~--~vs~~l~~Le~~G 79 (151)
T 3kp7_A 41 SHVLNMLSIEALTVGQITEKQGV--NKA--AVSRRVKKLLNAE 79 (151)
T ss_dssp HHHHHHHHHSCBCHHHHHHHHCS--CSS--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 33555563489999999999999 776 9999999999999
No 371
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=74.69 E-value=1.5 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+. |+++||+++++ ++. .++++|..|...|
T Consensus 23 ~~-s~~~IA~~~~i--~~~--~l~kIl~~L~~aG 51 (145)
T 1xd7_A 23 KT-SSEIIADSVNT--NPV--VVRRMISLLKKAD 51 (145)
T ss_dssp CC-CHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred CC-CHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45 99999999999 766 9999999999998
No 372
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.61 E-value=0.83 Score=32.35 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=33.7
Q ss_pred hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+..|...|. +++.|..+||+++|+ ++. .+.+.++.|...|
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G 50 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGV--SPE--TIHVRVEKMKQAG 50 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHcC
Confidence 4455666775 588999999999999 665 8999999999888
No 373
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=74.20 E-value=1.4 Score=30.94 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=33.4
Q ss_pred cccccccc--CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRL--ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L--~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.+...| ..++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i--~~~--tvs~~l~~Le~~G 90 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV--TNG--NVSGLVNRLIKDG 90 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS--CCS--CHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC--Chh--hHHHHHHHHHHCC
Confidence 34456666 3578999999999999 666 8999999999999
No 374
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=73.69 E-value=0.8 Score=31.82 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=32.1
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.++..|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~--~~~--tvs~~l~~Le~~G 82 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGL--DKA--AVSRTVKKLEEKK 82 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 33455554 478999999999999 665 8999999999999
No 375
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=73.40 E-value=0.66 Score=30.90 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred ccccccccC-CC-CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NT-PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g-~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|. .| +.|..+||+.+|+ +.. .+++.|..|...|
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv--s~~--tV~~~L~~L~~~G 61 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI--KVN--DVRKKLNLLEEQG 61 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 334555552 35 7999999999999 554 7899999998887
No 376
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.27 E-value=0.85 Score=31.28 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=32.9
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.++..|.+ ++.|..+||+.+++ ++. .+.+.++-|...|
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~l~i--s~~--~vs~~l~~L~~~g 73 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQERLQI--DRA--AVTRHLKLLEESG 73 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3445556654 78999999999999 665 8999999999999
No 377
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=73.27 E-value=2.6 Score=29.16 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 56 ~~~t~~eLa~~l~~--~~~--~vs~~l~~L~~~G 85 (148)
T 3jw4_A 56 SGIIQKDLAQFFGR--RGA--SITSMLQGLEKKG 85 (148)
T ss_dssp TCCCHHHHHHC----------CHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 78999999999999 666 8999999999999
No 378
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=72.64 E-value=1.4 Score=31.52 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=31.4
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+.|.+|+.|..+||+++|+ +-. .++-.|..|...|
T Consensus 16 ILE~Lk~G~~~t~~Iak~LGl--Shg--~aq~~Ly~LeREG 52 (165)
T 2vxz_A 16 ILALLADGCKTTSLIQQRLGL--SHG--RAKALIYVLEKEG 52 (165)
T ss_dssp HHHHHTTCCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHhCCccHHHHHHHhCC--cHH--HHHHHHHHHHhcC
Confidence 556777999999999999999 544 6777899999888
No 379
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=72.41 E-value=2.2 Score=33.00 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=30.3
Q ss_pred CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818 132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP 173 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~ 173 (199)
....|||..||+|..+.+..+.. -+ ++.+|+ |..++.++
T Consensus 212 ~~~~vlD~f~GsGtt~~~a~~~g--r~-~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIVAKKLG--RN-FIGCDMNAEYVNQAN 251 (260)
T ss_dssp TTCEEEESSCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHH
Confidence 34799999999999999998874 46 899998 44555443
No 380
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=72.28 E-value=0.98 Score=31.42 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=30.9
Q ss_pred cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|...|.+++.+..||++.+ |+ ++. .+.+.|+.|...|
T Consensus 40 IL~~L~~g~~~~~eLa~~l~gi--s~~--tls~~L~~Le~~G 77 (131)
T 1yyv_A 40 ILVALRDGTHRFSDLRRXMGGV--SEX--MLAQSLQALEQDG 77 (131)
T ss_dssp HHHHGGGCCEEHHHHHHHSTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHhccC--CHH--HHHHHHHHHHHCC
Confidence 3445557899999999999 79 655 8999999999999
No 381
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.94 E-value=3.1 Score=28.18 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=32.2
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-++..|. .++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~--~~~--tvs~~l~~L~~~g 75 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGC--VPS--NMTTMIQRMKRDG 75 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSS--CCT--THHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 33445554 478999999999999 666 8999999999999
No 382
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=71.71 E-value=2.8 Score=27.59 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.+..+||+.+++ +.. .+.|.|.-|...|
T Consensus 34 g~~~s~~eLa~~l~l--~~s--tLsR~l~rLe~~G 64 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL--PMS--VLRRVLTQLQAAG 64 (96)
T ss_dssp CCCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHhCC--chh--hHHHHHHHHHHCC
Confidence 478999999999999 655 8999999999888
No 383
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=71.30 E-value=2.3 Score=29.00 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=32.4
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-.|...+.+.|.++.+||+.+++ ++. .+..+|+.|+..|
T Consensus 9 ~~~i~~~~~~~p~~~~~la~~~~~--~~~--~~~~~l~~l~~~G 48 (121)
T 2pjp_A 9 WQKAEPLFGDEPWWVRDLAKETGT--DEQ--AMRLTLRQAAQQG 48 (121)
T ss_dssp HHHHGGGCSSSCEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 334556665567899999999999 665 8899999999999
No 384
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.07 E-value=3.6 Score=29.00 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=32.5
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 88 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFI--KPQ--SANKILQDLLANG 88 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTS--CGG--GHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCc
Confidence 34455554 478999999999999 666 8999999999999
No 385
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=70.68 E-value=2.5 Score=29.15 Aligned_cols=31 Identities=10% Similarity=0.101 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 20 ~~~~~~~ela~~l~v--s~~--tvs~~l~~Le~~G 50 (142)
T 1on2_A 20 KGYARVSDIAEALAV--HPS--SVTKMVQKLDKDE 50 (142)
T ss_dssp HSSCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 378999999999999 665 8999999999999
No 386
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=70.63 E-value=1.1 Score=31.19 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=32.0
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++..|.+ ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~--~~~--tvs~~l~~Le~~G 84 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYL--ACS--TTTDLVDRMERNG 84 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCC--Cch--hHHHHHHHHHHCC
Confidence 344555543 78999999999999 665 8999999999999
No 387
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=70.11 E-value=2.8 Score=28.73 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 29 ~~~~s~~ela~~l~i--s~~--tv~~~l~~Le~~G 59 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI--APS--SVFEEVSHLEEKG 59 (139)
T ss_dssp TSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHhCC--ChH--HHHHHHHHHHHCC
Confidence 478999999999999 665 8999999999999
No 388
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.95 E-value=1.2 Score=31.30 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=32.2
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.++..|.+ ++.|..+||+.+++ +.. .+.++++.|...|
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l~i--s~~--tvs~~l~~Le~~G 86 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLST--TKS--NVTNVVDSLEKRG 86 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 345555653 78999999999999 655 8999999999999
No 389
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=69.56 E-value=4.6 Score=34.05 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=37.5
Q ss_pred cCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-----CCeeeeccc
Q 037818 100 KMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-----ICEGINFDL 165 (199)
Q Consensus 100 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-----l~~~~v~Dl 165 (199)
..|+.+..|-+.++.+ ....|... +.-.||++|.|+|.++..+++.... .+ ..+++.
T Consensus 113 TAPeiS~~FGe~la~~---~~~~~~~~-----g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~-y~iVE~ 174 (432)
T 4f3n_A 113 TAPELSPLFAQTLARP---VAQALDAS-----GTRRVMEFGAGTGKLAAGLLTALAALGVELDE-YAIVDL 174 (432)
T ss_dssp SCGGGHHHHHHHHHHH---HHHHHHHH-----TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSE-EEEECT
T ss_pred CchhhhHHHHHHHHHH---HHHHHHhc-----CCCeEEEeCCCccHHHHHHHHHHHhcCCCCce-EEEEEc
Confidence 4678888888777533 22222221 1359999999999999988865422 24 677775
No 390
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=69.10 E-value=1.2 Score=31.33 Aligned_cols=39 Identities=26% Similarity=0.115 Sum_probs=32.1
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~i--s~~--tvs~~l~~Le~~g 91 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAM--DKV--AVSRAVARLLERG 91 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 33455554 478999999999999 665 8999999999999
No 391
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=69.10 E-value=2.1 Score=27.54 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=27.2
Q ss_pred CC-CCCHHHHHHHcCCCCCCCcch-HHHHHHHHhhCC
Q 037818 17 NT-PLSASQILTRILPSGDGDAEN-LQRILRLLTSYG 51 (199)
Q Consensus 17 ~g-~~t~~eLA~~~~~~~~~~~~~-l~rlL~~l~~~g 51 (199)
.+ +.|..+||+.+++ ++. . +.++++.|...|
T Consensus 27 ~~~~~t~~eLa~~l~i--s~~--t~vs~~l~~Le~~G 59 (95)
T 2pg4_A 27 KGYEPSLAEIVKASGV--SEK--TFFMGLKDRLIRAG 59 (95)
T ss_dssp TTCCCCHHHHHHHHCC--CHH--HHHTTHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHCC--Cch--HHHHHHHHHHHHCC
Confidence 35 7999999999999 665 8 899999999888
No 392
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.62 E-value=0.92 Score=31.11 Aligned_cols=40 Identities=13% Similarity=0.031 Sum_probs=32.4
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..++..|.. ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~l~~--s~~--~vs~~l~~Le~~g 78 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQACI--LRP--SMTGVLARLERDG 78 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCC--CHh--HHHHHHHHHHHCC
Confidence 3345555554 78999999999999 665 8999999999999
No 393
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=68.24 E-value=1.9 Score=28.90 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=21.8
Q ss_pred hccccccccCCCCCCHHHHHHHcCC
Q 037818 7 REGGKKVRLANTPLSASQILTRILP 31 (199)
Q Consensus 7 ~~lglf~~L~~g~~t~~eLA~~~~~ 31 (199)
++-.|++.|.+.|+|+.|||+.+|+
T Consensus 12 ~Re~Ii~lL~~~plta~ei~~~l~i 36 (105)
T 2gmg_A 12 RREKIIELLLEGDYSPSELARILDM 36 (105)
T ss_dssp HHHHHHHHTTTSCBCTTHHHHSSCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC
Confidence 4456788888999999999999999
No 394
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.18 E-value=3.4 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=31.6
Q ss_pred ccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++..|. .++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i--~~~--~vs~~l~~Le~~g 78 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERM--RSS--NLAALLRELERGG 78 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC--Chh--hHHHHHHHHHHCC
Confidence 3444554 578999999999999 665 8999999999999
No 395
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=67.97 E-value=3 Score=28.29 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=31.4
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~--s~~--tvs~~l~~L~~~g 71 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHV--DKG--TIARTLRRLEESG 71 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3444554 478999999999999 665 8999999999999
No 396
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=67.88 E-value=2.4 Score=28.89 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=30.9
Q ss_pred ccccccCC---CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN---TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~---g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+...|.. ++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~--~~~--tvs~~l~~Le~~G 75 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQR--TGP--TVSNLLRNLERKK 75 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCC--Ccc--cHHHHHHHHHHCC
Confidence 34444532 48999999999999 665 8999999999999
No 397
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=67.76 E-value=2.4 Score=27.26 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=25.7
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 20 LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|..+||+.+++ ++. .+.++++.|...|
T Consensus 31 ~t~~eLa~~l~i--~~~--tvs~~l~~Le~~G 58 (95)
T 2qvo_A 31 VYIQYIASKVNS--PHS--YVWLIIKKFEEAK 58 (95)
T ss_dssp EEHHHHHHHSSS--CHH--HHHHHHHHHHHTT
T ss_pred cCHHHHHHHHCc--CHH--HHHHHHHHHHHCc
Confidence 899999999999 665 8999999999988
No 398
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=67.67 E-value=3.2 Score=28.49 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=32.1
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 34 ~~iL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 73 (145)
T 3g3z_A 34 FAVLYTLATEGSRTQKHIGEKWSL--PKQ--TVSGVCKTLAGQG 73 (145)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 34455554 378999999999999 665 8999999999999
No 399
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=67.14 E-value=0.99 Score=33.98 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.8
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|.++|.|..+||+.+|+ ++. .+.+.|+.|...|
T Consensus 17 rl~IL~~L~~~~~s~~eLa~~l~i--s~s--tvs~hLk~Le~~G 56 (202)
T 2p4w_A 17 RRRILFLLTKRPYFVSELSRELGV--GQK--AVLEHLRILEEAG 56 (202)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 345566676799999999999999 665 8999999999999
No 400
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=67.14 E-value=3 Score=29.28 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++|..+||+.+++ ++. .+.++++-|...|
T Consensus 51 ~~~t~~eLa~~l~~--~~~--tvsr~v~~Le~~g 80 (148)
T 4fx0_A 51 IDLTMSELAARIGV--ERT--TLTRNLEVMRRDG 80 (148)
T ss_dssp ---CHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCC--Chh--hHHHHHHHHHHCC
Confidence 46899999999999 665 8999999999999
No 401
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=67.10 E-value=2.3 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.3
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|.. ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l~~--~~~--~vs~~l~~L~~~G 79 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKK--DTP--TVNRIVDVLLRKE 79 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC--CHh--hHHHHHHHHHHCC
Confidence 344555543 89999999999999 665 8999999999999
No 402
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=67.09 E-value=3.5 Score=26.76 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=25.9
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhC
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSY 50 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~ 50 (199)
+.+.+++.|+++||+.+|+ ++. .+.|++......
T Consensus 13 ~~~~~~~~~~~~lA~~~~~--S~~--~l~r~fk~~~g~ 46 (103)
T 3lsg_A 13 ESYTDSQFTLSVLSEKLDL--SSG--YLSIMFKKNFGI 46 (103)
T ss_dssp HHTTCTTCCHHHHHHHTTC--CHH--HHHHHHHHHHSS
T ss_pred HHccCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHCc
Confidence 3444568999999999999 665 788887776633
No 403
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=66.93 E-value=0.98 Score=32.36 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=32.8
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+...|.+ ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l~i--s~~--tvs~~l~~Le~~G 87 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLLGV--QPS--ATGRMVDRLVGAE 87 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 3445555654 78999999999999 665 8999999999999
No 404
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.65 E-value=3.6 Score=28.13 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=32.2
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.++..|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~--s~~--tvs~~l~~L~~~g 75 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGV--AKS--TVTGLVKRLEADG 75 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCC--Cch--hHHHHHHHHHHCC
Confidence 34455554 378999999999999 665 8999999999999
No 405
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=65.91 E-value=3.1 Score=28.69 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=32.2
Q ss_pred ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|...|. +++.|..+||+.+|+ ++. .+.+.++.|...|
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~--s~~--tv~~~l~~L~~~G 46 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI--SET--AVRKRVKALEEKG 46 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 445566664 578999999999999 665 8889999998887
No 406
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=65.55 E-value=1.2 Score=29.58 Aligned_cols=44 Identities=11% Similarity=-0.011 Sum_probs=32.4
Q ss_pred hhccccccccCC-CCCCHHHHHHHcCCCCCC--CcchHHHHHHHHhhCC
Q 037818 6 CREGGKKVRLAN-TPLSASQILTRILPSGDG--DAENLQRILRLLTSYG 51 (199)
Q Consensus 6 A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~--~~~~l~rlL~~l~~~g 51 (199)
..+..|...|.+ ++.|+.||++.++. ++ ....+.++|+-|...|
T Consensus 35 ~~e~~VL~~L~~~~~~t~~eL~~~l~~--~~~~s~sTVt~~L~rLe~KG 81 (99)
T 2k4b_A 35 NAELIVMRVIWSLGEARVDEIYAQIPQ--ELEWSLATVKTLLGRLVKKE 81 (99)
T ss_dssp CSCSHHHHHHHHHSCEEHHHHHHTCCG--GGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhc--ccCCCHhhHHHHHHHHHHCC
Confidence 345566666653 78999999999985 31 1237899999998887
No 407
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=65.36 E-value=3.5 Score=26.90 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=29.7
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|..+ .+..+||..+++ ++. .+.+.++.|...|
T Consensus 15 ~~i~~~-~~~t~La~~~~l--s~~--~~~~~l~~L~~~G 48 (95)
T 1r7j_A 15 EACKSG-SPKTRIMYGANL--SYA--LTGRYIKMLMDLE 48 (95)
T ss_dssp HHHTTC-BCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHcC-CCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence 344556 999999999999 776 9999999999999
No 408
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=65.22 E-value=4.5 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=28.7
Q ss_pred ccccccC---CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA---NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~---~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+...|. +++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 90 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLIS--RAP--DITRLIDRLDDRG 90 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC-----CT--HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCC--Chh--hHHHHHHHHHHCC
Confidence 3444444 358999999999999 776 9999999999999
No 409
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=65.17 E-value=1.1 Score=31.58 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=32.1
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.++..|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~i--s~~--tvs~~l~~Le~~G 94 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVV--EQS--TLSRALDGLQADG 94 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 34455554 478999999999999 655 8999999999999
No 410
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=65.13 E-value=4.8 Score=32.75 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred ceEEEecCCccHHHH--HHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGDCLR--MILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~--~l~~~~P~l~~~~v~Dl 165 (199)
++||=||||.+.+.. .|.+..|+++ ++++|-
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~-Vtlie~ 35 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIE-VTLIEP 35 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCe-EEEEeC
Confidence 689999999998654 4888899999 999984
No 411
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=64.54 E-value=4.4 Score=27.60 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=31.7
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+...|. .++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~--~~~--tvs~~l~~L~~~g 79 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELAL--DTG--TVSPLLKRMEQVD 79 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTC--CTT--THHHHHHHHHHTT
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--Chh--hHHHHHHHHHHCC
Confidence 3444554 478999999999999 666 8999999999999
No 412
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=64.06 E-value=1 Score=29.56 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
+++.|+.|||+.+|+ ++. .+.+-|+.|.
T Consensus 39 ~~~~~~~ela~~l~i--s~s--tvs~hL~~L~ 66 (99)
T 2zkz_A 39 HKALNVTQIIQILKL--PQS--TVSQHLCKMR 66 (99)
T ss_dssp HSCEEHHHHHHHHTC--CHH--HHHHHHHHHB
T ss_pred CCCcCHHHHHHHHCc--CHH--HHHHHHHHHH
Confidence 466666777777766 433 4555554443
No 413
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=63.93 E-value=1.6 Score=30.31 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=35.0
Q ss_pred cchhccccccccCC--CCCCHHHHHHHcC----CCCCCCcchHHHHHHHHhhCC
Q 037818 4 NECREGGKKVRLAN--TPLSASQILTRIL----PSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~----~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+..+..|...|.+ ++.|..+|++.++ + ++. .+.++|+-|...|
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~--~~~--Tvt~~l~rLe~kG 56 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDL--AYT--TVMAVLQRLAKKN 56 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC--CHH--HHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCC--CHH--HHHHHHHHHHHCC
Confidence 34456667777753 7999999999998 5 443 8999999999999
No 414
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=63.65 E-value=4.3 Score=27.50 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=31.9
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|.+ ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~--~~~--tvs~~l~~L~~~g 76 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSV--DLG--ALTRMLDRLVCKG 76 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCC--ChH--HHHHHHHHHHHCC
Confidence 344555553 78999999999999 665 8999999999999
No 415
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=62.87 E-value=9.1 Score=27.73 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=29.8
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl 165 (199)
.-|+|+|=|.|.-=..+.+.+|+-+ ..+||+
T Consensus 42 GpVlElGLGNGRTydHLRe~~P~R~-I~vfDR 72 (174)
T 3iht_A 42 GPVYELGLGNGRTYHHLRQHVQGRE-IYVFER 72 (174)
T ss_dssp SCEEEECCTTCHHHHHHHHHCCSSC-EEEEES
T ss_pred CceEEecCCCChhHHHHHHhCCCCc-EEEEEe
Confidence 6899999999999999999999999 999997
No 416
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.68 E-value=0.95 Score=30.53 Aligned_cols=42 Identities=17% Similarity=0.089 Sum_probs=33.0
Q ss_pred hhccccccccC-CCCCCHHHHHHHcC----CCCCCCcchHHHHHHHHhhCC
Q 037818 6 CREGGKKVRLA-NTPLSASQILTRIL----PSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 6 A~~lglf~~L~-~g~~t~~eLA~~~~----~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+..|...|. .++.|..+||+.++ + ++. .+.++|+-|...|
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~--s~~--tv~~~l~~L~~~G 56 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQKDW--SPK--TIRTLITRLYKKG 56 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHHCCC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhccCCC--cHh--hHHHHHHHHHHCC
Confidence 34455666665 48999999999999 5 344 8999999999999
No 417
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=61.80 E-value=4.3 Score=28.48 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=29.6
Q ss_pred hccccccccC--CCCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA--NTPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~--~g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.-|.+.|. +++.|++||.+.+ ++ +.. -++|.|+.|+..|
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i--s~a--TVYR~L~~L~e~G 70 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNM--SVA--TVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--Chh--hHHHHHHHHHHCC
Confidence 3444666664 4688999999888 45 333 7888899998888
No 418
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=61.65 E-value=5.1 Score=26.21 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=24.1
Q ss_pred cCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhh
Q 037818 15 LANTPLSASQILTRILPSGDGDAENLQRILRLLTS 49 (199)
Q Consensus 15 L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~ 49 (199)
+.+.+.|+++||+.+|+ ++. .+.|+.+....
T Consensus 16 ~~~~~~~~~~lA~~~~~--S~~--~l~r~fk~~~G 46 (107)
T 2k9s_A 16 LADSNFDIASVAQHVCL--SPS--RLSHLFRQQLG 46 (107)
T ss_dssp SSCSSCCHHHHHHHTTS--CHH--HHHHHHHHHHS
T ss_pred hccCCCCHHHHHHHHCC--CHH--HHHHHHHHHHC
Confidence 33468999999999999 665 78887776553
No 419
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=61.50 E-value=4.6 Score=27.38 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=30.2
Q ss_pred cccccCC-C--CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLAN-T--PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~-g--~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...|.. + +.|..+||+.+++ ++. .+.++++.|...|
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~--~~~--tvs~~l~~Le~~G 78 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSI--KSS--TATVLLQRMEIKK 78 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC--Ccc--hHHHHHHHHHHCC
Confidence 4444542 3 7999999999999 665 8999999999999
No 420
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=61.34 E-value=3.1 Score=33.03 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=48.1
Q ss_pred cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCCC----CCc---ccEEEe
Q 037818 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFKS----IPA---ADAIFM 197 (199)
Q Consensus 133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~~----~P~---aD~~~l 197 (199)
...++|+=.|||.+++++++ +.-+ ++.+|+ |..++..+++ +|++.+..|-++. .|. -|+|++
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~-~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDR-LYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSE-EEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCe-EEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 35689999999999999999 4455 999998 6777666654 7899999998752 232 499887
No 421
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=61.32 E-value=3.5 Score=28.89 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=31.9
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 92 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKI--DKG--TTARAIQKLVDEG 92 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 33444554 478999999999999 665 8999999999999
No 422
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=61.27 E-value=2.4 Score=28.85 Aligned_cols=30 Identities=7% Similarity=0.160 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 52 ~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 81 (127)
T 2frh_A 52 KEYYLKDIINHLNY--KQP--QVVKAVKILSQED 81 (127)
T ss_dssp SEEEHHHHHHHSSS--HHH--HHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 67899999999999 655 8899999999888
No 423
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=60.81 E-value=2.6 Score=28.39 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.9
Q ss_pred hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCCCCChHHH
Q 037818 6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPY 58 (199)
Q Consensus 6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g~~~~~~~ 58 (199)
|-++.|...|.+| .|..+|++.+|+ +.. -+.|+-+.|.. |.+.|+.+
T Consensus 46 aqR~~Ia~lL~~G-~SyreIa~~tG~--Sta--TIsRv~r~L~~-g~~gy~~v 92 (107)
T 3frw_A 46 SQRFEVAKMLTDK-RTYLDISEKTGA--STA--TISRVNRSLNY-GNDGYEMV 92 (107)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHCC--CHH--HHHHHHHHHHH-SCSHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCc--cHH--HHHHHHHHHHc-cChHHHHH
Confidence 3456778888877 999999999999 544 66777776654 43444433
No 424
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=60.58 E-value=3.7 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=30.7
Q ss_pred ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.+...|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~--~~~--tvs~~l~~Le~~G 83 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLII--TGS--SAAANVDGLISLG 83 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 3444554 478999999999999 665 8999999999888
No 425
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=60.50 E-value=1.8 Score=29.89 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=31.5
Q ss_pred ccccccccC--CCCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA--NTPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~--~g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.-|.+.|. +++.|++||.+.+ ++ +.. -++|.|+.|+..|
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i--s~~--TVYR~L~~L~e~G 59 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENI--GLT--TVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHh--hHHHHHHHHHHCC
Confidence 445666674 4789999999998 56 444 7999999999999
No 426
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.44 E-value=3.9 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=20.0
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
..|..+||+.+|+ +.. .+.+++....
T Consensus 21 g~s~~~IA~~lgi--s~~--Tv~~~~~~~~ 46 (51)
T 1tc3_C 21 NVSLHEMSRKISR--SRH--CIRVYLKDPV 46 (51)
T ss_dssp TCCHHHHHHHHTC--CHH--HHHHHHHCST
T ss_pred CCCHHHHHHHHCc--CHH--HHHHHHhhHH
Confidence 4899999999999 554 6777775443
No 427
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=60.40 E-value=5 Score=30.99 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=31.9
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+...|. +++.|..|||+.+|+ +.. .+.|.|+.|...|
T Consensus 155 ~~IL~~L~~~~~~s~~eLA~~lgl--sks--Tv~r~L~~Le~~G 194 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKMLDK--SEK--TLINKIAELKKFG 194 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 33445553 478999999999999 665 8999999999999
No 428
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=60.07 E-value=2.3 Score=31.22 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=33.2
Q ss_pred hccccccccCCCCCCHHHHHHHcC-CCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLANTPLSASQILTRIL-PSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~g~~t~~eLA~~~~-~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|...|.+++.|+.+||+.++ + +.. .+.+=|+.|...|
T Consensus 24 ~Rl~il~~L~~~~~~~~~l~~~l~~~--~~~--~~s~Hl~~L~~ag 65 (182)
T 4g6q_A 24 LRWRITQLLIGRSLTTRELAELLPDV--ATT--TLYRQVGILVKAG 65 (182)
T ss_dssp HHHHHHHHTTTSCEEHHHHHHHCTTB--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhcCC--CHH--HHHHHHHHHHHCC
Confidence 356677888889999999999996 7 433 6777888888888
No 429
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=60.05 E-value=3.8 Score=28.26 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=32.0
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~--~~~--~vs~~l~~Le~~G 82 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQM--KRQ--YISRILQEVQRAG 82 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 33445554 478999999999999 665 8999999999999
No 430
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=59.73 E-value=1.6 Score=30.06 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=31.1
Q ss_pred ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..++..|.+ ++ |..+||+.+++ ++. .+.++++.|...|
T Consensus 39 ~~~iL~~l~~~~~-~~~~la~~l~~--~~~--tvs~~l~~Le~~G 78 (144)
T 3f3x_A 39 DFSILKATSEEPR-SMVYLANRYFV--TQS--AITAAVDKLEAKG 78 (144)
T ss_dssp HHHHHHHHHHSCE-EHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 3445555654 44 99999999999 665 8999999999999
No 431
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=59.70 E-value=5.4 Score=28.89 Aligned_cols=47 Identities=17% Similarity=0.013 Sum_probs=36.8
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+.
T Consensus 67 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnaNVL~lG~rvi 115 (162)
T 2vvp_A 67 VLGGSGNGEQIAANKVPGAR-CALAWSVQTAALAREHNNAQLIGIGGRMH 115 (162)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSEEEEEGGGS
T ss_pred EEeCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEccccc
Confidence 66888888888999999999 9888889888888874 45555555443
No 432
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=59.69 E-value=5 Score=27.53 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|.++||+++++ ++. .+.+.++.|...|
T Consensus 51 ~ps~~~LA~~l~~--s~~--~V~~~l~~Le~kG 79 (128)
T 2vn2_A 51 FPTPAELAERMTV--SAA--ECMEMVRRLLQKG 79 (128)
T ss_dssp SCCHHHHHHTSSS--CHH--HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 3799999999999 666 8999999999999
No 433
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=59.36 E-value=4.4 Score=27.99 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=31.4
Q ss_pred cccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .+++|..+||+.+++ ++. .+.++++-|...|
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i--~~~--tvs~~l~~Le~~G 82 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGL--DPS--QIVGLVDELEERG 82 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTC--CHH--HHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCC--CHh--HHHHHHHHHHHCC
Confidence 34445553 357899999999999 665 8999999999999
No 434
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=59.24 E-value=5.3 Score=29.44 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|.|..|||+.+|+ +.. .+.+.|+.|...|
T Consensus 23 ~~~s~~eia~~lgl--~~~--tv~~~l~~Le~~G 52 (196)
T 3k2z_A 23 YPPSVREIARRFRI--TPR--GALLHLIALEKKG 52 (196)
T ss_dssp SCCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCC--CcH--HHHHHHHHHHHCC
Confidence 48999999999999 544 7999999999999
No 435
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=59.12 E-value=2.9 Score=29.22 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 49 ~~~~t~~eLa~~l~~--~~~--tvs~~v~~Le~~G 79 (147)
T 4b8x_A 49 SGELPMSKIGERLMV--HPT--SVTNTVDRLVRSG 79 (147)
T ss_dssp GGEEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCC--CHH--HHHHHHHHHHhCC
Confidence 378999999999999 665 8999999999999
No 436
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.32 E-value=4.6 Score=29.46 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=32.5
Q ss_pred ccccccccC---CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA---NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~---~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+...|. +++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~i--s~~--tvs~~l~~Le~~G 85 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGT--SKQ--NINRLVANLEKNG 85 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 334445554 478999999999999 665 8999999999999
No 437
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=58.14 E-value=6.1 Score=28.22 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=36.3
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+
T Consensus 63 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnaNVl~lG~rv 110 (149)
T 3he8_A 63 VICGTGLGISIAANKVPGIR-AAVCTNSYMARMSREHNDANILALGERV 110 (149)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHTTCCSEEEEETTT
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEcccc
Confidence 56888888888899999999 9888889988888874 4555555544
No 438
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=57.87 E-value=4.4 Score=27.63 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=31.9
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++..|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~l~~--s~~--~vs~~l~~Le~~g 71 (144)
T 1lj9_A 32 YLYLVRVCENPGIIQEKIAELIKV--DRT--TAARAIKRLEEQG 71 (144)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHCcCcCHHHHHHHHCC--CHh--HHHHHHHHHHHCC
Confidence 33455554 478999999999999 665 8999999999999
No 439
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=57.51 E-value=4.5 Score=28.02 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=31.8
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l~~--s~~--tvs~~l~~Le~~g 89 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERLYL--DSA--TLTPLLKRLQAAG 89 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCC--Ccc--cHHHHHHHHHHCC
Confidence 33445554 478999999999999 655 8999999999999
No 440
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=57.02 E-value=5.6 Score=28.58 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=37.5
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+.
T Consensus 75 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnANVL~lG~rvi 123 (155)
T 1o1x_A 75 LLCGTGLGMSIAANRYRGIR-AALCLFPDMARLARSHNNANILVLPGRLI 123 (155)
T ss_dssp EEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHTTCCSEEEEETTTS
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHcCCCcEEEECCccc
Confidence 66888888888999999999 9898889988888874 45555555554
No 441
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=56.84 E-value=6.9 Score=28.45 Aligned_cols=46 Identities=15% Similarity=0.016 Sum_probs=36.1
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+
T Consensus 84 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~hNnANVL~lG~Rv 131 (166)
T 3s5p_A 84 LVCGTGIGISIAANKMKGIR-CALCSTEYDAEMARKHNNANALALGGRT 131 (166)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHTTCCCEEEEETTT
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEcccc
Confidence 56888888888899999999 9888889888888874 4555545544
No 442
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=56.71 E-value=3.6 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.0
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..+...|. .++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~--~~~--~vs~~l~~L~~~G 83 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDL--SSN--TLTPMLKRLEQSG 83 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 34444554 488999999999999 665 8999999999999
No 443
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=56.67 E-value=3.6 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=29.4
Q ss_pred ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-|++.|.+ .|.+..|||+.+|+ + ..-+.+.|..|-.-|
T Consensus 23 kVLe~LkeaG~PlkageIae~~Gv--d--KKeVdKaik~LKkEg 62 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQA--P--KRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTS--C--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCC--C--HHHHHHHHHHHHHcC
Confidence 45666653 79999999999999 4 347888888887666
No 444
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=56.67 E-value=4 Score=28.72 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=32.0
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.+...|.. ++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 56 ~~vL~~l~~~~~~t~~eLa~~l~~--~~~--~vs~~l~~Le~~G 95 (161)
T 3e6m_A 56 LRLLSSLSAYGELTVGQLATLGVM--EQS--TTSRTVDQLVDEG 95 (161)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 334455543 78999999999999 665 8999999999999
No 445
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=56.50 E-value=6.9 Score=31.17 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.++.|..|||+++|+ ++. -++|.|..|...|
T Consensus 19 ~~~~~~~ela~~l~v--S~~--tIrRdL~~l~~~G 49 (315)
T 2w48_A 19 EQDMTQAQIARELGI--YRT--TISRLLKRGREQG 49 (315)
T ss_dssp TSCCCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 477999999999999 666 8999999999998
No 446
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=56.50 E-value=1.1 Score=34.48 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=34.2
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|+..|.++|.|+.+||+.+|+ ++. .+.+-|+.|...|
T Consensus 14 R~~IL~~L~~g~~s~~ELa~~lgl--S~s--tVs~hL~~Le~aG 53 (232)
T 2qlz_A 14 RRDLLSHLTCMECYFSLLSSKVSV--SST--AVAKHLKIMEREG 53 (232)
T ss_dssp HHHHHHHHTTTTTCSSSSCTTCCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 344777788899999999999999 655 8999999999888
No 447
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=56.36 E-value=4.9 Score=28.59 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=32.2
Q ss_pred ccccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|...|. .++.|..+||+.+++ ++. .+.++++-|...|
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i--~~~--tvs~~l~~Le~~G 96 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI--EQP--SLVRTLDQLEDKG 96 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC--CHh--hHHHHHHHHHHCC
Confidence 334455554 467999999999999 665 8999999999999
No 448
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=56.31 E-value=5.2 Score=24.11 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=15.9
Q ss_pred CCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 20 LSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 20 ~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
.|..|||+.+|+ ++. .+.|+|+
T Consensus 1 ~T~~diA~~aGV--S~s--TVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGV--SRT--TASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTS--CHH--HHHHHHH
T ss_pred CCHHHHHHHHCc--CHH--HHHHHHc
Confidence 478899999999 544 5566554
No 449
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=56.04 E-value=7.6 Score=25.21 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.5
Q ss_pred CHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 21 SASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 21 t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|..+||+.+|+ +.. .+++-|..|...|
T Consensus 37 s~~eLa~~~~v--Sr~--tvr~al~~L~~~G 63 (102)
T 1v4r_A 37 SVADIRAQFGV--AAK--TVSRALAVLKSEG 63 (102)
T ss_dssp CHHHHHHHSSS--CTT--HHHHHTTTTTTSS
T ss_pred CHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 99999999999 666 8999999999888
No 450
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=55.40 E-value=1.9 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=18.7
Q ss_pred cCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 15 LANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 15 L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
+.+| .|..+||+.+|+ +.. -+.+++.
T Consensus 18 ~~~g-~s~~~ia~~lgv--s~~--Tv~r~l~ 43 (52)
T 1jko_C 18 LEKG-HPRQQLAIIFGI--GVS--TLYRYFP 43 (52)
T ss_dssp HHTT-CCHHHHHHTTSC--CHH--HHHHHSC
T ss_pred HHcC-CCHHHHHHHHCC--CHH--HHHHHHH
Confidence 3345 899999999999 544 5666653
No 451
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.11 E-value=3.8 Score=28.44 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=29.5
Q ss_pred hccccccccC--C-CCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLA--N-TPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~--~-g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.-|.+.|. + ++.|++||.+.+ ++ +.. -++|.|+.|+..|
T Consensus 19 qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i--s~a--TVYR~L~~L~e~G 67 (136)
T 1mzb_A 19 PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV--GLA--TVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC--CHH--HHHHHHHHHHHCC
Confidence 3444666664 3 689999999888 45 333 7889999999888
No 452
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=54.83 E-value=6.9 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=20.1
Q ss_pred ceEEEecCCccH--HHHHHHHHCCCCC
Q 037818 134 KQLVDVGGSAGD--CLRMILQKHRFIC 158 (199)
Q Consensus 134 ~~vvDvGGG~G~--~~~~l~~~~P~l~ 158 (199)
.+||=+|||+|. +++.|.+...+++
T Consensus 5 ~~IV~igGGtGl~~ll~gLk~~~~~iT 31 (326)
T 2q7x_A 5 PXITVIGGGTGSPVILXSLREXDVEIA 31 (326)
T ss_dssp CEEEEECCCTTHHHHHHHHHHSSCEEE
T ss_pred CeEEEEcCcccHHHHHHHhccCCCCeE
Confidence 589999999997 6777776666777
No 453
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=54.81 E-value=4.2 Score=28.18 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=31.6
Q ss_pred ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-++..|.+ ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~--s~~--tvs~~l~~Le~~g 79 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEV--KPS--AVTLMADRLEQKN 79 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 34555553 78999999999999 665 8999999999999
No 454
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=54.34 E-value=12 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-+|+..||+++++ +.. ..++.|+.|.+-|
T Consensus 58 KlITpsvlseRlkI--~gS--LAR~aLreL~~kG 87 (108)
T 3u5c_Z 58 RYVSVSVLVDRLKI--GGS--LARIALRHLEKEG 87 (108)
T ss_dssp SSBSHHHHHHTTCC--CTT--HHHHHHHHHSSSS
T ss_pred eEEeHHHhhhhhhh--hHH--HHHHHHHHHHHCC
Confidence 46999999999999 776 8899999999888
No 455
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=54.18 E-value=6.6 Score=28.63 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=36.4
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+.+-+
T Consensus 83 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~~aR~hNnANVL~lG~Rv 130 (169)
T 3ph3_A 83 VICGTGLGISIAANKVPGIR-AAVCTNSYMARMSREHNDANILALGERV 130 (169)
T ss_dssp EEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHTTCCSEEEEETTT
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEcccc
Confidence 66888888888899999999 9888889888888874 4555555544
No 456
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=53.50 E-value=8.4 Score=27.48 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=37.2
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+.
T Consensus 64 liCGTGiG~siaANKv~GIR-Aal~~d~~sA~~ar~hNnaNVl~lG~rvi 112 (149)
T 2vvr_A 64 LICGTGVGISIAANKFAGIR-AVVCSEPYSAQLSRQNNDTNVLAFGSRVV 112 (149)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHHHCCCEEEEETTTB
T ss_pred EEeCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEECcccc
Confidence 67889988888999999999 9888889888888873 45555555444
No 457
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=52.84 E-value=10 Score=31.32 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=25.9
Q ss_pred ceEEEecCCccHH--HHHHHHHCCCCCeeeeccc
Q 037818 134 KQLVDVGGSAGDC--LRMILQKHRFICEGINFDL 165 (199)
Q Consensus 134 ~~vvDvGGG~G~~--~~~l~~~~P~l~~~~v~Dl 165 (199)
++||=||||.|.+ +..|.+..|+.+ +|++|-
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~-VtlI~~ 35 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLK-ITLISD 35 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCE-EEEECS
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCe-EEEEcC
Confidence 4789999999874 556888899999 999984
No 458
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=52.71 E-value=5.2 Score=30.39 Aligned_cols=44 Identities=14% Similarity=-0.128 Sum_probs=35.7
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGG 183 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~g 183 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++
T Consensus 73 liCGTGiG~sIAANKv~GIR-AAlc~d~~sA~laR~HNnANVL~lG~ 118 (216)
T 2ppw_A 73 TGCGTGVGAMLALNSFPGVV-CGLAVDPTDAYLYSQINGGNALSIPY 118 (216)
T ss_dssp EEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHHTCCSEEEEES
T ss_pred EEcCCcHHHHHHhhcCCCeE-EEEeCCHHHHHHHHHhcCceEEEeCC
Confidence 67899998889999999999 9888889888888863 44544444
No 459
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=52.62 E-value=6 Score=30.01 Aligned_cols=44 Identities=14% Similarity=-0.102 Sum_probs=35.8
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGG 183 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~g 183 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++
T Consensus 72 liCGTGiG~siaANKv~GIR-AAlc~d~~sA~laR~hNnANVL~lG~ 117 (214)
T 3ono_A 72 TGCGTGQGALMSCNLHPGVV-CGYCLEPSDAFLFNQINNGNAISLAF 117 (214)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECSSHHHHHHHHHHTCCSEEEEES
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHHcCCcEEEecC
Confidence 67899998888999999999 9888889888888863 45555554
No 460
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=52.09 E-value=6.7 Score=31.95 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.4
Q ss_pred cceEEEecCCccH--HHHHHHHHCCCCCee--eecc
Q 037818 133 VKQLVDVGGSAGD--CLRMILQKHRFICEG--INFD 164 (199)
Q Consensus 133 ~~~vvDvGGG~G~--~~~~l~~~~P~l~~~--~v~D 164 (199)
..+||=+|||+|. +++.|.+...+++ + ++.|
T Consensus 10 ~~kIVvigGGtGl~~ll~gLk~~~~~iT-aIVtvaD 44 (341)
T 2p0y_A 10 RPKIVVIGGGTGLPVVLNGLRKQAVDIT-AVVTVAD 44 (341)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSSSEEE-EECC---
T ss_pred CCeEEEECCcccHHHHHHHHHhCCCCeE-EEEECCc
Confidence 3689999999997 6677776666777 5 4444
No 461
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=51.86 E-value=5.7 Score=27.69 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=31.2
Q ss_pred hccccccccCC--CCCCHHHHHHHcC-----CCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN--TPLSASQILTRIL-----PSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~--g~~t~~eLA~~~~-----~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.-|++.|.+ ++.|++||.+.+. + +.. -++|.|+.|+..|
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i--s~a--TVYR~L~~L~e~G 62 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAV--GLT--TVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHH--HHHHHHHHHHHCC
Confidence 34456777754 7899999998883 4 333 7899999999999
No 462
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=51.76 E-value=9 Score=26.69 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.|..+||+.+++ ++. .+.+.++.|...|
T Consensus 53 ~~~~~~~la~~l~v--s~~--tvs~~l~~Le~~G 82 (155)
T 2h09_A 53 GEARQVDMAARLGV--SQP--TVAKMLKRLATMG 82 (155)
T ss_dssp SCCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence 78999999999999 655 8999999999999
No 463
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=51.71 E-value=3.2 Score=28.47 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.3
Q ss_pred ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCCCCChHHHHH
Q 037818 8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYML 60 (199)
Q Consensus 8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g~~~~~~~~~ 60 (199)
++.|+..|.+| .|..|||+.+|+ ++. -+.|.-+.|- .|.+.|+.++.
T Consensus 65 R~eV~klL~~G-~syreIA~~~g~--S~a--TIsRv~r~L~-~g~~gy~~~L~ 111 (119)
T 3kor_A 65 RLQVAKMIKQG-YTYATIEQESGA--STA--TISRVKRSLQ-WGNDAYTMILD 111 (119)
T ss_dssp HHHHHHHHHHT-CCHHHHHHHHCC--CHH--HHHHHHHHHH-SSCSHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCC--CHH--HHHHHHHHHh-cCChHHHHHHH
Confidence 35667777777 999999999999 554 6777766663 34445544443
No 464
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=51.35 E-value=9 Score=28.18 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=36.5
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDTF 186 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~f 186 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+.
T Consensus 87 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~HNnANVL~lG~Rvi 135 (179)
T 3k7p_A 87 LAAGSGIGMSIAANKVPGVR-AALCHDHYTAAMSRIHNDANIVCVGERTT 135 (179)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSEEEEETTTS
T ss_pred EEccCcHHHhhHhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEccccc
Confidence 56788888888899999999 9888889888888874 45555555443
No 465
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=51.07 E-value=17 Score=29.31 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=43.7
Q ss_pred CcceEEEecCCccHHHHHHHHH-CCCCCeeeeccchHHHhcCC-----------------------------CCCCceEE
Q 037818 132 GVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDLPEVVGEAP-----------------------------SILGVTHI 181 (199)
Q Consensus 132 ~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dlp~v~~~a~-----------------------------~~~ri~~~ 181 (199)
+...||-+|||.=...-.+... .++++ .+=+|+|+|++.=+ ..++.+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~-~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSE-EEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCe-EEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 4579999999999998888875 36788 88899999876300 13789999
Q ss_pred eCCCCC
Q 037818 182 GGDTFK 187 (199)
Q Consensus 182 ~gd~f~ 187 (199)
+.|+.+
T Consensus 169 ~~DL~d 174 (334)
T 3iei_A 169 GADLRD 174 (334)
T ss_dssp ECCTTC
T ss_pred cccccc
Confidence 999976
No 466
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=50.87 E-value=6.6 Score=30.08 Aligned_cols=44 Identities=9% Similarity=-0.213 Sum_probs=35.4
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGG 183 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~g 183 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++
T Consensus 89 liCGTGiG~sIAANKv~GIR-AAlc~d~~sA~laR~HNnANVL~lGa 134 (231)
T 3c5y_A 89 TGCGTGMGSMLAANAMPGVF-CGLVIDPTDAFLFGQINDGNAISMPY 134 (231)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHHTCCSEEEEES
T ss_pred EEcCCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhcCccEEEECC
Confidence 67899988888999999999 9888889888888863 44544444
No 467
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=50.55 E-value=7.8 Score=25.81 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLL 47 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l 47 (199)
...|+.+||+++++ ++. -+.|+++.|
T Consensus 34 ~~~si~elA~~~~v--S~a--Tv~Rf~kkL 59 (107)
T 3iwf_A 34 VNMTSQEIANQLET--SST--SIIRLSKKV 59 (107)
T ss_dssp TTCCHHHHHHHHTS--CHH--HHHHHHHHH
T ss_pred HHCCHHHHHHHHCC--CHH--HHHHHHHHh
Confidence 46999999999999 554 455554443
No 468
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.47 E-value=5.8 Score=28.04 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred hccccccccCC---CCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN---TPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~---g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+.-|.+.|.+ ++.|++||.+.+ ++ +.. -++|.|+.|+..|
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i--s~a--TVYR~L~~L~e~G 66 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGEEI--GLA--TVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC--CHH--HHHHHHHHHHHCC
Confidence 34456777753 689999999888 44 333 7889999999888
No 469
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=50.36 E-value=12 Score=32.19 Aligned_cols=76 Identities=7% Similarity=-0.052 Sum_probs=46.9
Q ss_pred HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-------------CCCeeeeccc-hHHHhcCCC------CCCceE
Q 037818 121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-------------FICEGINFDL-PEVVGEAPS------ILGVTH 180 (199)
Q Consensus 121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-------------~l~~~~v~Dl-p~v~~~a~~------~~ri~~ 180 (199)
.-+++..+ -....+|+|-.||+|.++.+..+... ... ...+|. |.+...++- .+.-.+
T Consensus 207 ~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~-i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 207 RFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS-IFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC-EEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh-hhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 34445444 33446999999999999987765322 345 677776 555555542 144456
Q ss_pred EeCCCCC-CCC------cccEEEec
Q 037818 181 IGGDTFK-SIP------AADAIFMK 198 (199)
Q Consensus 181 ~~gd~f~-~~P------~aD~~~l~ 198 (199)
..+|.+. +.. ..|+|+.+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~N 309 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTN 309 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred cccccccCchhhhcccccceEEEec
Confidence 7788774 221 14888754
No 470
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=50.01 E-value=2.7 Score=25.52 Aligned_cols=28 Identities=7% Similarity=0.142 Sum_probs=19.6
Q ss_pred ccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 14 RLANTPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 14 ~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
...+...|..+||+.+|+ ++. .+.++.+
T Consensus 15 ~r~~~g~sq~~lA~~~gi--s~~--~i~~~e~ 42 (78)
T 3b7h_A 15 LITQQNLTINRVATLAGL--NQS--TVNAMFE 42 (78)
T ss_dssp HHHHTTCCHHHHHHHHTC--CHH--HHHHHHC
T ss_pred HHHHcCCCHHHHHHHHCc--CHH--HHHHHHc
Confidence 333456899999999999 554 5555543
No 471
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=49.85 E-value=7.5 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=21.6
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCCCCChHH
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAP 57 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g~~~~~~ 57 (199)
..|+.+||+++++ ++ .-+.|.+..+|-.++..
T Consensus 39 ~~si~elA~~~~v--S~-----aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 39 ESTVNEISALANS--SD-----AAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp TCCHHHHHHHTTC--CH-----HHHHHHHHHTTCSSHHH
T ss_pred hcCHHHHHHHHCC--CH-----HHHHHHHHHcCCCCHHH
Confidence 5899999999999 55 34455555566444433
No 472
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=49.19 E-value=5.3 Score=32.86 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=29.9
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|+..|. ++++|..|||+.+|+ ++. .+.++++-|...|
T Consensus 21 il~~l~~~~~~sr~~la~~~~l--s~~--tv~~~v~~L~~~g 58 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQL--APA--SITKIVHEMLEAH 58 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 556664 589999999999999 555 7888888887776
No 473
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=48.88 E-value=12 Score=26.20 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=29.7
Q ss_pred cccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+...|. +++.+..+||+.+++ ++. .+.++++-|...|
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~--~~~--tvs~~v~~Le~~G 74 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI--EQP--SLVRTLDQLEEKG 74 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc--CHH--HHHHHHHHHHhCC
Confidence 334453 345788999999999 665 8999999999999
No 474
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.54 E-value=4.6 Score=27.68 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=31.3
Q ss_pred cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..++..|.. ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 43 ~~iL~~l~~~~~~~~~~la~~l~~--~~~--tvs~~l~~L~~~g 82 (147)
T 1z91_A 43 YLALLLLWEHETLTVKKMGEQLYL--DSG--TLTPMLKRMEQQG 82 (147)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCC--CcC--cHHHHHHHHHHCC
Confidence 334445543 68999999999999 665 8999999999998
No 475
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=48.38 E-value=11 Score=27.92 Aligned_cols=46 Identities=15% Similarity=-0.054 Sum_probs=35.6
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+-||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+
T Consensus 95 liCGTGiG~sIaANKv~GIR-AAlc~d~~sA~laR~HNnANVL~lG~Rv 142 (184)
T 3sgw_A 95 MICGTGLGVAISANKVPGIR-AVTAHDTFSVERAILSNDAQVLCFGQRV 142 (184)
T ss_dssp EEESSSHHHHHHHHTSTTCC-EEECCSHHHHHHHHHTTCCSEEEEETTT
T ss_pred EEcCCcHHHhhhhhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEchhh
Confidence 56788888888899999999 9888888888888874 4454445444
No 476
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=48.31 E-value=11 Score=24.46 Aligned_cols=28 Identities=4% Similarity=0.090 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhh
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTS 49 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~ 49 (199)
.+.|+++||+.+|+ ++. .+.|+......
T Consensus 17 ~~~~~~~lA~~~~~--s~~--~l~r~fk~~~G 44 (108)
T 3mn2_A 17 RPITIEKLTALTGI--SSR--GIFKAFQRSRG 44 (108)
T ss_dssp SCCCHHHHHHHHTC--CHH--HHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCC--CHH--HHHHHHHHHhC
Confidence 57999999999999 665 78887776653
No 477
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.59 E-value=4.7 Score=28.50 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=27.5
Q ss_pred cccccccC--CCCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLA--NTPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~--~g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.-|.+.|. +++.|++||.+.+ ++ +.. -++|.|+.|+..|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i--s~a--TVYR~L~~L~e~G 75 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNT--SIS--SVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCC--CHh--hHHHHHHHHHHCC
Confidence 34556664 3688888888877 45 333 6888888888888
No 478
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=47.38 E-value=12 Score=27.99 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+++.+..+||+.+++ ++. .+.+.++-|...|
T Consensus 18 ~~~~~~~~lA~~l~v--s~~--tvs~~l~~Le~~G 48 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV--SPP--AVTEMMKKLLAEE 48 (214)
T ss_dssp CSCCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHCC--Chh--HHHHHHHHHHHCC
Confidence 478999999999999 665 8999999999999
No 479
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=47.21 E-value=9.5 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSY 50 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~ 50 (199)
.+.|+++||+.+|+ ++. .+.|+.+.....
T Consensus 22 ~~~~~~~lA~~~~~--S~~--~l~r~fk~~~G~ 50 (113)
T 3oio_A 22 EPLSTDDIAYYVGV--SRR--QLERLFKQYLGT 50 (113)
T ss_dssp SCCCHHHHHHHHTS--CHH--HHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHHHHCc
Confidence 57999999999999 665 788877766533
No 480
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=47.02 E-value=11 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=15.3
Q ss_pred HHhhhCCCCCCcceEEEecCCccH
Q 037818 122 SVLDGYNGFKGVKQLVDVGGSAGD 145 (199)
Q Consensus 122 ~~~~~~~~~~~~~~vvDvGGG~G~ 145 (199)
.+...++ ..+...|+|||||+=.
T Consensus 128 gv~~~~~-~~~~~lviDIGGGStE 150 (513)
T 1u6z_A 128 GVEHTQP-EKGRKLVIDIGGGSTE 150 (513)
T ss_dssp HHHHHSC-CCSCEEEEEECSSCEE
T ss_pred HHHhhcc-CCCCEEEEEECCCcEE
Confidence 3444555 4445799999999743
No 481
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=46.97 E-value=30 Score=23.49 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=37.2
Q ss_pred ceEEEecCCc-cHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCC-------CCcccEEEe
Q 037818 134 KQLVDVGGSA-GDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKS-------IPAADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~-G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~-------~P~aD~~~l 197 (199)
.+++=+|+|. |......+++ -+.+ ++++|. |+.++.+++ ..+..+.||..++ +..+|+++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-~g~~-v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-SDIP-LVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-TTCC-EEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHH-CCCC-EEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 4677778754 4433333333 3567 889997 666665553 5677888988753 223577664
No 482
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.93 E-value=7.2 Score=27.18 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
...|.++||+++|+ ++. .+.++++-|..-|
T Consensus 50 ~~ps~~~LA~~~~~--s~~--~v~~~L~~L~~KG 79 (135)
T 2v79_A 50 YFPTPNQLQEGMSI--SVE--ECTNRLRMFIQKG 79 (135)
T ss_dssp CSCCHHHHHTTSSS--CHH--HHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence 45899999999999 766 8999999999988
No 483
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=46.60 E-value=3.3 Score=27.86 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=33.7
Q ss_pred chhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 5 ECREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 5 ~A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..+..|...|. .++.|..|||+.++.+..-++..+.++|+-|...|
T Consensus 9 t~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kG 56 (126)
T 1sd4_A 9 SMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKE 56 (126)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCC
Confidence 344556666675 47899999999997410012238999999999999
No 484
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=46.53 E-value=12 Score=29.92 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.2
Q ss_pred HhhhCCCCC-CcceEEEecCCcc
Q 037818 123 VLDGYNGFK-GVKQLVDVGGSAG 144 (199)
Q Consensus 123 ~~~~~~~~~-~~~~vvDvGGG~G 144 (199)
+...++ ++ +...|+|||||+=
T Consensus 122 v~~~~~-~~~~~~lviDIGGGSt 143 (315)
T 3mdq_A 122 VQQAVP-MEDHISLAMDIGGGSV 143 (315)
T ss_dssp HHHHSC-CTTCCEEEEEECSSCE
T ss_pred HHhcCC-CCCCCEEEEEeCCCce
Confidence 344555 53 4579999999873
No 485
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=46.08 E-value=11 Score=24.37 Aligned_cols=40 Identities=15% Similarity=0.036 Sum_probs=31.2
Q ss_pred ccccccccC---CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 8 EGGKKVRLA---NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 8 ~lglf~~L~---~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+..|...|. +..++..+||+++++ +.. -+.++|..|...|
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l--~~~--tvt~iLk~LE~kg 64 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNL--PLT--EINKILKNLESKK 64 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 344555665 347999999999999 655 8999999998887
No 486
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=45.96 E-value=13 Score=24.14 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhC
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRLLTSY 50 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~ 50 (199)
.+.|+++||+.+|+ ++. .+.|+.+.....
T Consensus 20 ~~~~~~~lA~~~~~--S~~--~l~r~fk~~~G~ 48 (108)
T 3oou_A 20 EGMSLKTLGNDFHI--NAV--YLGQLFQKEMGE 48 (108)
T ss_dssp SCCCHHHHHHHHTS--CHH--HHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHHHHCc
Confidence 47999999999999 665 888888776643
No 487
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=45.45 E-value=6 Score=32.92 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=30.5
Q ss_pred cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|+..|. .+++|..|||+.+|+ ++. .+.++++-|...|
T Consensus 44 il~~l~~~~~~sr~ela~~~gl--s~~--tv~~~v~~L~~~g 81 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESEL--APA--SITKITRELIDAH 81 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 555665 489999999999999 655 7889998888887
No 488
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.20 E-value=4.8 Score=30.89 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=29.8
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
|.-.|..++.|.++||+.+|+ .+. -+..-|.-|...|
T Consensus 170 l~~~l~~~~~t~~~la~~~~l--~~~--~V~~~l~~L~~~~ 206 (232)
T 2qlz_A 170 LHYLLLNGRATVEELSDRLNL--KER--EVREKISEMARFV 206 (232)
T ss_dssp HHHHHHSSEEEHHHHHHHHTC--CHH--HHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhcC
Confidence 344566799999999999999 665 7777788888777
No 489
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=43.66 E-value=43 Score=22.44 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=35.8
Q ss_pred ceEEEecCCccHHHHHHHHHC--CCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCC-------CCcccEEEe
Q 037818 134 KQLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKS-------IPAADAIFM 197 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~--P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~-------~P~aD~~~l 197 (199)
.+++=+|+| .++..+++.. -+.+ ++++|. |+.++.+++ ..+.++.||..++ ...+|+++.
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~-V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKK-VLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCC-EEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 467778874 3444444322 2567 888886 555554433 3577888888763 223577664
No 490
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=43.55 E-value=11 Score=21.09 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILR 45 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~ 45 (199)
...|..+||+.+|+ ++. .+.+++.
T Consensus 30 ~g~s~~eIA~~lgi--s~~--TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGV--SER--KVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTS--CHH--HHHHHHT
T ss_pred cCCCHHHHHHHHCc--CHH--HHHHHHH
Confidence 45799999999999 554 6666653
No 491
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=43.31 E-value=8.1 Score=28.68 Aligned_cols=38 Identities=13% Similarity=-0.109 Sum_probs=31.4
Q ss_pred ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
.|...|.. ++.|..+||+.+++ ++. .+.++++.|...|
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~l~i--~~s--tvs~~l~~Le~~G 90 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVM--HVS--TAFNFSKKLEERG 90 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTC--CHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence 34445543 78999999999999 665 8999999999999
No 492
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=43.13 E-value=18 Score=29.17 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=43.4
Q ss_pred ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCC----CC--cccEEEec
Q 037818 134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKS----IP--AADAIFMK 198 (199)
Q Consensus 134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~----~P--~aD~~~l~ 198 (199)
.+++|+-+|.|.+..++.++.-..+.+..+|. |..++..+.+ +...++.+|+.+- +| ..|++++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 47999999999999999988643332455665 4555554443 5556778888752 33 24887753
No 493
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=43.03 E-value=13 Score=26.42 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=36.0
Q ss_pred ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--CCceEEeCCC
Q 037818 139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--LGVTHIGGDT 185 (199)
Q Consensus 139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~ri~~~~gd~ 185 (199)
+.||+|.=..-.+.++|.++ +.++--|.....+++. .+|-.+++-+
T Consensus 69 liCGTGiG~siaANKv~GIR-AAl~~d~~sA~~ar~hNnANVL~lG~rv 116 (148)
T 4em8_A 69 LICGTGIGMSIAANRHKNIR-AALCSSTMLAKLSREHNDANVLCFGSRY 116 (148)
T ss_dssp EEESSSHHHHHHHTTSTTCC-EEECSSHHHHHHHHHHHCCCEEEEETTT
T ss_pred EEccCcHHHHHHHhcCCCeE-EEEeCCHHHHHHHHHhCCCcEEEEchhh
Confidence 56888888888899999999 9888889888888873 4555555444
No 494
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=42.90 E-value=12 Score=29.98 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=33.5
Q ss_pred hccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 7 REGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 7 ~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
....|...|.+ ++.|.++||+++++ ++. .++|-+..|...|
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~v--S~~--ti~r~l~~L~~~G 47 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGM--SRA--AINKHIQTLRDWG 47 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHhCC
Confidence 34456677765 68999999999999 665 8999999998888
No 495
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=42.35 E-value=12 Score=26.45 Aligned_cols=29 Identities=14% Similarity=0.352 Sum_probs=26.2
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
-+|+..|++++++ +.. ..++.|+.|.+.|
T Consensus 63 lITpsvlseRlkI--~gS--LARkaLreL~~kG 91 (143)
T 2xzm_8 63 VLTVSTVVEKLKV--NGS--LARQLMRTMADRK 91 (143)
T ss_dssp EECHHHHHHHHCB--CHH--HHHHHHHHHHHTT
T ss_pred eecHHHHHHHhcc--hHH--HHHHHHHHHHHCC
Confidence 5899999999999 665 8889999999999
No 496
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=41.80 E-value=9.5 Score=27.33 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=30.6
Q ss_pred cccccccCC-CC---CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 9 GGKKVRLAN-TP---LSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 9 lglf~~L~~-g~---~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
..|...|.. ++ .|..+||+.+++ ++. .+.++++.|...|
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~i--s~~--tvs~~l~~Le~~G 114 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAI--SGP--STSNRIVRLLEKG 114 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSC--CSG--GGSSHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCc
Confidence 344555543 32 999999999999 666 8999999999988
No 497
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=40.93 E-value=17 Score=22.67 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
++.+++.++|+.+++ +. .++++.++.+|.++|
T Consensus 28 ~~~i~l~~aa~~L~v--~~-kRRiYDI~NVLe~ig 59 (76)
T 1cf7_A 28 DGVLDLKLAADTLAV--RQ-KRRIYDITNVLEGIG 59 (76)
T ss_dssp TTEEEHHHHHHHTTT--CC-THHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHhCC--cc-ceehhhHHHHHhHhc
Confidence 477999999999999 43 358999999999888
No 498
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.71 E-value=15 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHcCCCCCCCcchHHHHHHH
Q 037818 18 TPLSASQILTRILPSGDGDAENLQRILRL 46 (199)
Q Consensus 18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~ 46 (199)
.+.|+++||+.+|+ ++. .+.|+.+.
T Consensus 22 ~~~~~~~lA~~~~~--S~~--~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLM--SPS--LLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTC--CHH--HHHHHHHH
T ss_pred CCCCHHHHHHHHCc--CHH--HHHHHHHH
Confidence 58999999999999 665 77777665
No 499
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=39.34 E-value=16 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=22.7
Q ss_pred ccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818 14 RLA-NTPLSASQILTRILPSGDGDAENLQRILRLLT 48 (199)
Q Consensus 14 ~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~ 48 (199)
.|. +.+.|+++||+.+|+ ++. .+.|+.+...
T Consensus 87 ~i~~~~~~sl~~lA~~~g~--S~~--~f~r~Fk~~~ 118 (133)
T 1u8b_A 87 LLEQETPVTLEALADQVAM--SPF--HLHRLFKATT 118 (133)
T ss_dssp HTCSSSCCCHHHHHHHHTS--CHH--HHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHCc--CHH--HHHHHHHHHH
Confidence 444 567999999999999 654 7777665544
No 500
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=39.16 E-value=17 Score=26.29 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=26.3
Q ss_pred CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818 19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG 51 (199)
Q Consensus 19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g 51 (199)
+.|-++||..+|+ ++. .+.|+|.-|...|
T Consensus 169 ~~t~~~lA~~lg~--sr~--tvsR~l~~L~~~g 197 (220)
T 3dv8_A 169 KITHETIANHLGS--HRE--VITRMLRYFQVEG 197 (220)
T ss_dssp CCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred cCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence 7899999999999 766 8999999999888
Done!