BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037821
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T R GWG+R+LQD+P G+FVCEYVGE+++++E R E +Y LD
Sbjct: 149 LQLYRT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------EEDSYLFDLDN 200
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA F GNV+RFINH C + NL+ + V + D + +AFF+TR
Sbjct: 201 --------KDGEVYCIDARFYGNVSRFINHHC-EPNLVPVRVFMAHQDLRFPRIAFFSTR 251
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
+ A E+L +DYG F D K F C CGS CR
Sbjct: 252 LIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPKCR 285
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T R GWG+R+LQD+P G+FVCEYVGE+++++E R E +Y LD
Sbjct: 147 LQLYRT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------EEDSYLFDLDN 198
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA F GNV+RFINH C + NL+ + V + D + +AFF+TR
Sbjct: 199 --------KDGEVYCIDARFYGNVSRFINHHC-EPNLVPVRVFMAHQDLRFPRIAFFSTR 249
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
+ A E+L +DYG F D K F C CGS CR
Sbjct: 250 LIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPKCR 283
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T R GWG+R+LQD+P G+FVCEYVGE+++++E R E +Y LD
Sbjct: 123 LQLYRT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------EEDSYLFDLDN 174
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA F GNV+RFINH C + NL+ + V + D + +AFF+TR
Sbjct: 175 --------KDGEVYCIDARFYGNVSRFINHHC-EPNLVPVRVFMAHQDLRFPRIAFFSTR 225
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
+ A E+L +DYG F D K F C CGS CR
Sbjct: 226 LIEAGEQLGFDYGERFWDIKG--KLFSCRCGSPKCR 259
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T R GWG+R+LQD+P G+FVCEYVGE+++++E R E +Y LD
Sbjct: 148 LQLYRT-RDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVR-------EEDSYLFDLDN 199
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA F GNV+RFINH C + NL+ + V + D + +AFF+TR
Sbjct: 200 --------KDGEVYCIDARFYGNVSRFINHHC-EPNLVPVRVFMAHQDLRFPRIAFFSTR 250
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
+ A E+L +D G F D K F C CGS CR
Sbjct: 251 LIEAGEQLGFDAGERFWDIKG--KLFSCRCGSPKCR 284
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T + GWG+R LQ +P+G+F+CEYVGE++++ E R E +Y LD
Sbjct: 130 LQLYRTAKM-GWGVRALQTIPQGTFICEYVGELISDAEADVR-------EDDSYLFDLDN 181
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA + GN++RFINH C D N+I + V + D + +AFF++R
Sbjct: 182 --------KDGEVYCIDARYYGNISRFINHLC-DPNIIPVRVFMLHQDLRFPRIAFFSSR 232
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
D+ EEL +DYG F D K F C CGSE C+
Sbjct: 233 DIRTGEELGFDYGDRFWDIKS--KYFTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
LQ++ T + GWG+R LQ +P+G+F+CEYVGE++++ E R E +Y LD
Sbjct: 128 LQLYRTAKM-GWGVRALQTIPQGTFICEYVGELISDAEADVR-------EDDSYLFDLDN 179
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+D E C+DA + GN++RFINH C D N+I + V + D + +AFF++R
Sbjct: 180 --------KDGEVYCIDARYYGNISRFINHLC-DPNIIPVRVFMLHQDLRFPRIAFFSSR 230
Query: 122 DVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
D+ EEL +DYG F D K F C CGSE C+
Sbjct: 231 DIRTGEELGFDYGDRFWDIKS--KYFTCQCGSEKCK 264
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
QVF T + KGWGLRTL+ +PKG FVCEY GE+L +E+ R + S+ + Y + +
Sbjct: 128 FQVFKTHK-KGWGLRTLEFIPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSN-YIIAIRE 185
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+ +++ +D T+ GN+ RF+NH C + NL+ IPV I D LA F +
Sbjct: 186 HVYNGQVMETF----VDPTYIGNIGRFLNHSC-EPNLLMIPVRI---DSMVPKLALFAAK 237
Query: 122 DVSASEELTWDY 133
D+ EEL++DY
Sbjct: 238 DIVPEEELSYDY 249
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 21/166 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
L +F T +GWG++TL + + SFV EYVGE++T+ E ER Q ++ TY LD
Sbjct: 142 LCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEA-ERRGQFYDNKGITYLFDLDY 200
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+ + +DA GNV+ F+NH C D NL V I+ D +A F+TR
Sbjct: 201 ---------ESDEFTVDAARYGNVSHFVNHSC-DPNLQVFNVFIDNLDTRLPRIALFSTR 250
Query: 122 DVSASEELTWDYGIDFS--------DHDHPIKAFH--CCCGSEFCR 157
++A EELT+DY + S DH K C CG+ CR
Sbjct: 251 TINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCR 296
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERH-TYPVTLD 60
LQ+F T + +GWG++ ++ +G FV Y+GEI+T+ E R +S+ + R Y LD
Sbjct: 135 LQIFRT-KDRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFALD 193
Query: 61 --ADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFF 118
+D S L + L +D + RFINH C D N+ + D+H + LA F
Sbjct: 194 KFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSC-DPNMAIFARVGDHADKHIHDLALF 252
Query: 119 TTRDVSASEELTWDY-----GIDFSDHDHPIK---AFHCCCGSEFCR 157
+D+ ELT+DY G++ HD P K C CG+ CR
Sbjct: 253 AIKDIPKGTELTFDYVNGLTGLESDAHD-PSKISEMTKCLCGTAKCR 298
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 20/166 (12%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDA 61
L++F T + KGWG+R+L+ P G+F+ Y+GE++T+ E +R+ ++ + TY LD
Sbjct: 139 LEIFKT-KEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRD-KNYDDDGITYLFDLD- 195
Query: 62 DWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTR 121
+ D +DA G+V+RF NH C N+ R Y LAFF +
Sbjct: 196 ------MFDDASEYTVDAQNYGDVSRFFNHSC-SPNIAIYSAVRNHGFRTIYDLAFFAIK 248
Query: 122 DVSASEELTWDY--GIDFS------DHDHPIKAF--HCCCGSEFCR 157
D+ EELT+DY DFS + I C CGS CR
Sbjct: 249 DIQPLEELTFDYAGAKDFSPVQSQKSQQNRISKLRRQCKCGSANCR 294
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 23/157 (14%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSER-HTYPVTLD 60
++V LT++ KGWGLR +DLP +FV EY GE+L + E R + + ++ H Y + L
Sbjct: 119 VEVILTEK-KGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALK 177
Query: 61 ADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTT 120
D +DAT GN +RF+NH C + N + R + FFTT
Sbjct: 178 NDE------------IIDATQKGNCSRFMNHSC-EPNCETQKWTVNGQLR----VGFFTT 220
Query: 121 RDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCR 157
+ V + ELT+DY + +A C CGS CR
Sbjct: 221 KLVPSGSELTFDYQF----QRYGKEAQKCFCGSANCR 253
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILR 70
KGWG+RT + L G F+ EY+GE+++ E R ++ + Y + LD+
Sbjct: 84 KGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRNRMIEQYHNHSDHYCLNLDS--------- 134
Query: 71 DEEALCLDATFCGNVARFINHRCFDANLIDIPVEIET-PDRHYYHLAFFTTRDVSASEEL 129
+ +D+ GN ARFINH C D E++ Y + + +D+ A EL
Sbjct: 135 ---GMVIDSYRMGNEARFINHSC------DPNCEMQKWSVNGVYRIGLYALKDMPAGTEL 185
Query: 130 TWDYGIDFSDHDHPIKAFHCC-CGSEFCRDV 159
T+DY H ++ C CG E CR +
Sbjct: 186 TYDYNF----HSFNVEKQQLCKCGFEKCRGI 212
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 12 GWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRD 71
G GL +++ G V EY G ++ R++Q+ E++ D+ + R
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVI-------RSIQTDKREKY-----YDSKGIGCYMFRI 110
Query: 72 EEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTW 131
+++ +DAT GN ARFINH C + N + I+ H+ F R + EELT+
Sbjct: 111 DDSEVVDATMHGNAARFINHSC-EPNCYSRVINIDGQK----HIVIFAMRKIYRGEELTY 165
Query: 132 DYGIDFSDHDHPIKAFHCCCGSEFCR 157
DY D + + C CG++ CR
Sbjct: 166 DYKFPIEDASNKLP---CNCGAKKCR 188
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 23/156 (14%)
Query: 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSE-RHTYPVTLD 60
+++F T +GWGLRT D+ KG FV EYVGE++ E R + + + Y +TLD
Sbjct: 94 VEIFRT-LQRGWGLRTKTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLD 152
Query: 61 ADWGSERILRDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTT 120
D RI +DA GN ARF+NH C N + R + F
Sbjct: 153 KD----RI--------IDAGPKGNYARFMNH-CCQPNCETQKWSVNGDTR----VGLFAL 195
Query: 121 RDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFC 156
D+ A ELT++Y ++ + + C CG+ C
Sbjct: 196 SDIKAGTELTFNYNLECLGNGKTV----CKCGAPNC 227
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNM-----QSSGSERHTYPVTLDADWGS 65
KG G+ + +G FV EY G+++ T+ +R S+G + +
Sbjct: 35 KGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL------- 87
Query: 66 ERILRDEEALCLDATFCGN-VARFINH-RCFD--ANLIDIPVEIETPDRHYYHLAFFTTR 121
+ C+DAT N + R INH +C + L DI P HL +R
Sbjct: 88 ------SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDID---GVP-----HLILIASR 133
Query: 122 DVSASEELTWDYG 134
D++A EEL +DYG
Sbjct: 134 DIAAGEELLYDYG 146
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNM-----QSSGSERHTYPVTLDADWGS 65
KG G+ + +G FV EY G+++ T+ +R S+G + +
Sbjct: 41 KGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL------- 93
Query: 66 ERILRDEEALCLDATFCGN-VARFINH-RCFD--ANLIDIPVEIETPDRHYYHLAFFTTR 121
+ C+DAT N + R INH +C + L DI P HL +R
Sbjct: 94 ------SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDID---GVP-----HLILIASR 139
Query: 122 DVSASEELTWDYG 134
D++A EEL +DYG
Sbjct: 140 DIAAGEELLYDYG 152
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNM-----QSSGSERHTYPVTLDADWGS 65
KG G+ + +G FV EY G+++ T+ +R S+G + +
Sbjct: 40 KGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL------- 92
Query: 66 ERILRDEEALCLDATFCGN-VARFINH-RCFD--ANLIDIPVEIETPDRHYYHLAFFTTR 121
+ C+DAT N + R INH +C + L DI P HL +R
Sbjct: 93 ------SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDID---GVP-----HLILIASR 138
Query: 122 DVSASEELTWDYG 134
D++A EEL +DYG
Sbjct: 139 DIAAGEELLFDYG 151
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNM-----QSSGSERHTYPVTLDADWGS 65
KG G+ + +G FV EY G+++ T+ +R S+G + +
Sbjct: 39 KGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL------- 91
Query: 66 ERILRDEEALCLDATFCGN-VARFINHRCF---DANLIDIPVEIETPDRHYYHLAFFTTR 121
+ C+DAT N + R INH L DI P HL +R
Sbjct: 92 ------SKTYCVDATRETNRLGRLINHSKSGNCQTKLHDID---GVP-----HLILIASR 137
Query: 122 DVSASEELTWDYG 134
D++A EEL +DYG
Sbjct: 138 DIAAGEELLYDYG 150
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 30/133 (22%)
Query: 11 KGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNM-----QSSGSERHTYPVTLDADWGS 65
KG G+ + +G FV E+ G+++ T+ +R S+G + +
Sbjct: 40 KGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYL------- 92
Query: 66 ERILRDEEALCLDATFCGN-VARFINH-RCFD--ANLIDIPVEIETPDRHYYHLAFFTTR 121
+ C+DAT N + R INH +C + L DI P HL +R
Sbjct: 93 ------SKTYCVDATRETNRLGRLINHSKCGNCQTKLHDID---GVP-----HLILIASR 138
Query: 122 DVSASEELTWDYG 134
D++A EEL +DYG
Sbjct: 139 DIAAGEELLYDYG 151
>pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|B Chain B, Crystal Structure Of Hslv From Thermotoga Maritima
pdb|1M4Y|C Chain C, Crystal Structure Of Hslv From Thermotoga Maritima
Length = 171
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 16 RTLQDLPKGSFVCEYVGEILTNTELYER---NMQSSGSERHTYPVTLDADWGSERILRDE 72
R ++ L +G + + G + L++R ++ G V L DW ++R+LR
Sbjct: 32 RKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRL 91
Query: 73 EALCLDA 79
EAL L A
Sbjct: 92 EALLLVA 98
>pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|H Chain H, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|I Chain I, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|J Chain J, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|K Chain K, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|L Chain L, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|M Chain M, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|N Chain N, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|O Chain O, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|P Chain P, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|Q Chain Q, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|R Chain R, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3K|A Chain A, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|B Chain B, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1G3K|C Chain C, Crystal Structure Of The H. Influenzae Protease Hslv At
1.9 A Resolution
pdb|1JJW|A Chain A, Structure Of Haemophilus Influenzae Hslv Protein At 1.9
A Resolution
pdb|1JJW|B Chain B, Structure Of Haemophilus Influenzae Hslv Protein At 1.9
A Resolution
pdb|1JJW|C Chain C, Structure Of Haemophilus Influenzae Hslv Protein At 1.9
A Resolution
pdb|1KYI|G Chain G, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|H Chain H, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|I Chain I, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|J Chain J, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|K Chain K, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|L Chain L, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|M Chain M, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|N Chain N, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|O Chain O, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|P Chain P, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|Q Chain Q, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|R Chain R, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1OFH|G Chain G, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|H Chain H, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|I Chain I, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|L Chain L, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|M Chain M, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFH|N Chain N, Asymmetric Complex Between Hslv And I-domain Deleted
Hslu (h. Influenzae)
pdb|1OFI|G Chain G, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|H Chain H, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|I Chain I, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|L Chain L, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|M Chain M, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
pdb|1OFI|N Chain N, Asymmetric Complex Between Hslv And I-Domain Deleted
Hslu (H. Influenzae)
Length = 174
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 3 QVFLTDRHKGWGLRTLQDLPKGSFVCEYVG---EILTNTELYERNMQSSGSERHTYPVTL 59
QV L + R ++ L G + + G + T EL+ER ++ V L
Sbjct: 19 QVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVEL 78
Query: 60 DADWGSERILRDEEALCLDA 79
DW ++R LR EA+ + A
Sbjct: 79 AKDWRTDRALRKLEAMLIVA 98
>pdb|4GZV|A Chain A, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|B Chain B, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|C Chain C, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|D Chain D, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|E Chain E, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|F Chain F, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|G Chain G, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
pdb|4GZV|H Chain H, Crystal Structure Of A Hypothetical Protein (bacova_00364)
From Bacteroides Ovatus Atcc 8483 At 1.95 A Resolution
Length = 142
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 103 VEIETPDRHYYHLAFFTTRDVSASEELTWDY 133
+E E D Y HL +F D++ +E TW Y
Sbjct: 94 LEFEIKDNDYLHLKYFIKSDLNGNELNTWYY 124
>pdb|1Y1U|A Chain A, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|B Chain B, Structure Of Unphosphorylated Stat5a
pdb|1Y1U|C Chain C, Structure Of Unphosphorylated Stat5a
Length = 585
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 99 IDIPVEIETPDRHYYHLAFFTTRDVS 124
I I + ++PDR+ ++L FTTRD S
Sbjct: 500 ITIAWKFDSPDRNLWNLKPFTTRDFS 525
>pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|B Chain B, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|C Chain C, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
Length = 183
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 39 ELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALC 76
EL+ER ++ V L DW ++R+LR EAL
Sbjct: 58 ELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALL 95
>pdb|1E94|A Chain A, Hslv-Hslu From E.Coli
pdb|1E94|B Chain B, Hslv-Hslu From E.Coli
pdb|1E94|C Chain C, Hslv-Hslu From E.Coli
pdb|1E94|D Chain D, Hslv-Hslu From E.Coli
pdb|1G4A|B Chain B, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|A Chain A, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|D Chain D, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|C Chain C, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|M Chain M, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|N Chain N, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|O Chain O, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|P Chain P, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1HT2|A Chain A, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|B Chain B, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|C Chain C, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|D Chain D, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|I Chain I, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|J Chain J, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|K Chain K, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|L Chain L, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|C Chain C, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|D Chain D, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|V Chain V, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|X Chain X, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|A Chain A, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|B Chain B, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|Z Chain Z, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|Y Chain Y, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|A Chain A, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|B Chain B, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|C Chain C, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|D Chain D, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 175
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 39 ELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALC 76
EL+ER ++ V L DW ++R+LR EAL
Sbjct: 58 ELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALL 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,202,165
Number of Sequences: 62578
Number of extensions: 206301
Number of successful extensions: 671
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 25
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)