Query 037821
Match_columns 160
No_of_seqs 126 out of 1102
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4442 Clathrin coat binding 100.0 2.8E-39 6.1E-44 260.5 11.1 135 2-158 122-257 (729)
2 KOG1080 Histone H3 (Lys4) meth 100.0 2.8E-34 6.1E-39 243.4 11.6 134 4-159 869-1003(1005)
3 KOG1082 Histone H3 (Lys9) meth 100.0 4.7E-31 1E-35 207.2 10.6 156 2-159 178-352 (364)
4 smart00317 SET SET (Su(var)3-9 100.0 7.1E-28 1.5E-32 160.1 14.2 114 2-133 2-116 (116)
5 KOG1079 Transcriptional repres 99.9 2.8E-25 6.1E-30 179.1 9.0 115 6-138 599-713 (739)
6 KOG1083 Putative transcription 99.9 6.9E-24 1.5E-28 177.4 1.2 119 2-138 1180-1298(1306)
7 KOG1085 Predicted methyltransf 99.9 4.6E-22 1E-26 147.2 9.9 122 1-138 258-381 (392)
8 KOG1141 Predicted histone meth 99.8 4.2E-21 9E-26 158.0 5.3 84 73-159 1177-1260(1262)
9 COG2940 Proteins containing SE 99.8 2.6E-20 5.7E-25 151.3 1.8 140 4-159 335-478 (480)
10 PF00856 SET: SET domain; Int 99.8 9.1E-19 2E-23 121.6 5.1 55 75-134 108-162 (162)
11 KOG2589 Histone tail methylase 99.6 2.9E-16 6.3E-21 119.9 4.8 122 10-158 136-257 (453)
12 KOG1081 Transcription factor N 99.1 2E-11 4.4E-16 98.6 0.6 117 16-160 319-436 (463)
13 KOG2461 Transcription factor B 98.9 3.1E-09 6.6E-14 84.3 4.7 108 7-138 36-147 (396)
14 smart00508 PostSET Cysteine-ri 96.8 0.00063 1.4E-08 32.7 1.2 14 146-159 2-15 (26)
15 KOG2084 Predicted histone tail 96.0 0.014 3E-07 47.4 5.1 58 88-154 208-272 (482)
16 KOG1141 Predicted histone meth 94.9 0.015 3.3E-07 50.1 1.8 41 2-43 801-841 (1262)
17 KOG1337 N-methyltransferase [G 94.5 0.033 7.2E-07 45.8 2.9 40 88-135 239-278 (472)
18 KOG2155 Tubulin-tyrosine ligas 88.9 0.23 5E-06 40.3 1.5 52 84-138 203-254 (631)
19 PF08666 SAF: SAF domain; Int 88.4 0.33 7.2E-06 28.0 1.6 17 116-132 3-19 (63)
20 KOG1338 Uncharacterized conser 81.0 1.3 2.9E-05 35.5 2.4 25 10-34 39-63 (466)
21 smart00858 SAF This domain fam 76.3 2 4.3E-05 24.6 1.7 16 116-131 3-18 (64)
22 TIGR02059 swm_rep_I cyanobacte 70.2 17 0.00036 23.5 4.8 23 114-136 76-98 (101)
23 KOG1338 Uncharacterized conser 64.6 4.6 0.0001 32.6 1.8 42 85-134 218-259 (466)
24 TIGR03170 flgA_cterm flagella 45.5 11 0.00025 24.7 1.1 16 117-132 2-17 (122)
25 TIGR03569 NeuB_NnaB N-acetylne 43.4 13 0.00029 29.3 1.3 20 114-133 277-296 (329)
26 PF07177 Neuralized: Neuralize 36.8 34 0.00075 20.3 2.1 20 114-133 30-49 (69)
27 PHA03094 dUTPase; Provisional 36.6 69 0.0015 22.0 3.9 30 7-36 22-53 (144)
28 TIGR03586 PseI pseudaminic aci 35.1 27 0.0006 27.5 1.9 20 114-133 275-294 (327)
29 PF11720 Inhibitor_I78: Peptid 34.7 15 0.00033 21.1 0.3 19 119-137 25-43 (60)
30 TIGR00049 Iron-sulfur cluster 34.0 24 0.00052 22.5 1.2 38 117-154 61-102 (105)
31 PRK06005 flgA flagellar basal 33.0 29 0.00062 24.4 1.5 19 114-132 33-51 (160)
32 PF14100 PmoA: Methane oxygena 32.4 1.4E+02 0.0031 22.8 5.3 48 86-135 203-252 (271)
33 PF06718 DUF1203: Protein of u 32.2 39 0.00085 22.5 2.0 18 118-135 6-24 (117)
34 PRK12618 flgA flagellar basal 32.0 31 0.00068 23.6 1.6 19 114-132 19-37 (141)
35 PF03991 Prion_octapep: Copper 31.0 20 0.00042 12.1 0.2 6 9-14 2-7 (8)
36 PLN02547 dUTP pyrophosphatase 29.9 1.2E+02 0.0026 21.1 4.2 28 9-36 35-64 (157)
37 PRK13623 iron-sulfur cluster i 29.8 34 0.00073 22.4 1.4 37 118-154 72-112 (115)
38 PF01847 VHL: von Hippel-Linda 29.7 99 0.0021 21.7 3.7 39 84-132 15-53 (156)
39 KOG2084 Predicted histone tail 29.6 43 0.00093 27.1 2.2 26 10-35 23-48 (482)
40 COG2914 Uncharacterized protei 28.3 1.1E+02 0.0024 19.6 3.4 34 12-45 51-89 (99)
41 TIGR03586 PseI pseudaminic aci 28.2 50 0.0011 26.1 2.3 17 12-28 275-291 (327)
42 PF02440 Adeno_E3_CR1: Adenovi 28.1 42 0.00091 19.7 1.4 17 87-103 41-57 (63)
43 TIGR02011 IscA iron-sulfur clu 27.5 43 0.00093 21.5 1.5 38 117-154 61-102 (105)
44 COG1188 Ribosome-associated he 26.2 51 0.0011 21.3 1.6 21 117-137 43-63 (100)
45 KOG4078 Putative mitochondrial 26.0 63 0.0014 22.3 2.1 21 125-155 94-114 (173)
46 TIGR03177 pilus_cpaB Flp pilus 24.8 47 0.001 25.1 1.5 19 114-132 36-54 (261)
47 PRK09504 sufA iron-sulfur clus 23.9 50 0.0011 22.0 1.4 36 119-154 80-119 (122)
48 PF10246 MRP-S35: Mitochondria 23.9 69 0.0015 20.8 1.9 19 126-154 36-54 (104)
49 COG2089 SpsE Sialic acid synth 23.4 37 0.0008 26.9 0.7 19 12-30 289-307 (347)
50 PF01835 A2M_N: MG2 domain; I 21.5 1.1E+02 0.0023 19.0 2.6 16 117-132 4-20 (99)
51 PF08402 TOBE_2: TOBE domain; 21.5 1.5E+02 0.0033 16.7 3.1 14 122-135 56-69 (75)
52 COG4118 Phd Antitoxin of toxin 21.5 47 0.001 20.6 0.8 14 120-133 18-31 (84)
53 PF04014 Antitoxin-MazE: Antid 21.0 68 0.0015 17.1 1.3 15 122-136 20-34 (47)
54 PF08156 NOP5NT: NOP5NT (NUC12 21.0 92 0.002 18.3 2.0 17 1-19 1-17 (67)
55 PRK07018 flgA flagellar basal 20.7 63 0.0014 24.1 1.5 18 114-131 110-127 (235)
56 PF06716 DUF1201: Protein of u 20.2 41 0.00088 18.4 0.3 13 80-93 40-52 (54)
No 1
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-39 Score=260.55 Aligned_cols=135 Identities=37% Similarity=0.661 Sum_probs=123.1
Q ss_pred eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCC-CCccceeeecCcccccccccCCccEEEecc
Q 037821 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGS-ERHTYPVTLDADWGSERILRDEEALCLDAT 80 (160)
Q Consensus 2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 80 (160)
++||.+. +|||||+|.++|++|+||+||.||+++..+...|...|... ..+.|++.+.++ .+|||+
T Consensus 122 vevF~Te-~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~------------e~IDAT 188 (729)
T KOG4442|consen 122 VEVFLTE-KKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGG------------EYIDAT 188 (729)
T ss_pred eeEEEec-CcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCC------------ceeccc
Confidence 5899996 89999999999999999999999999999999999988754 467777777775 799999
Q ss_pred ccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCccc
Q 037821 81 FCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRD 158 (160)
Q Consensus 81 ~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~ 158 (160)
..||.+|||||||. |||....|.+.+. ++|.|||.++|.+||||||||+.+..+.+ .-.|.||+++|||
T Consensus 189 ~KGnlaRFiNHSC~-PNa~~~KWtV~~~----lRvGiFakk~I~~GEEITFDYqf~rYGr~----AQ~CyCgeanC~G 257 (729)
T KOG4442|consen 189 KKGNLARFINHSCD-PNAEVQKWTVPDE----LRVGIFAKKVIKPGEEITFDYQFDRYGRD----AQPCYCGEANCRG 257 (729)
T ss_pred ccCcHHHhhcCCCC-CCceeeeeeeCCe----eEEEEeEecccCCCceeeEeccccccccc----ccccccCCccccc
Confidence 99999999999996 9999999999874 59999999999999999999999987766 6799999999998
No 2
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.8e-34 Score=243.44 Aligned_cols=134 Identities=32% Similarity=0.615 Sum_probs=123.5
Q ss_pred EEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCC-CccceeeecCcccccccccCCccEEEecccc
Q 037821 4 VFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSE-RHTYPVTLDADWGSERILRDEEALCLDATFC 82 (160)
Q Consensus 4 vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 82 (160)
-|..+..|||||||.+.|.+|++|+||+|+++...-++.|+..|.... ...|.|.++.+ .+|||+..
T Consensus 869 ~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~------------~ViDAtk~ 936 (1005)
T KOG1080|consen 869 KFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDE------------VVVDATKK 936 (1005)
T ss_pred ccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccc------------eEEecccc
Confidence 467778999999999999999999999999999999999998887776 89999998875 89999999
Q ss_pred CCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCcccC
Q 037821 83 GNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDV 159 (160)
Q Consensus 83 gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~~ 159 (160)
||+||||||||+ |||..+.+.+++.. +++++|.|+|.+|||||+||..+..+. +.-|+||+++|||.
T Consensus 937 gniAr~InHsC~-PNCyakvi~V~g~~----~IvIyakr~I~~~EElTYDYkF~~e~~-----kipClCgap~Crg~ 1003 (1005)
T KOG1080|consen 937 GNIARFINHSCN-PNCYAKVITVEGDK----RIVIYSKRDIAAGEELTYDYKFPTEDD-----KIPCLCGAPNCRGF 1003 (1005)
T ss_pred CchhheeecccC-CCceeeEEEecCee----EEEEEEecccccCceeeeecccccccc-----ccccccCCCccccc
Confidence 999999999997 99999999998875 999999999999999999999777665 58999999999995
No 3
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=4.7e-31 Score=207.21 Aligned_cols=156 Identities=40% Similarity=0.664 Sum_probs=122.0
Q ss_pred eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCC-ccceeeecCcccc-----------cccc
Q 037821 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSER-HTYPVTLDADWGS-----------ERIL 69 (160)
Q Consensus 2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~ 69 (160)
||||++.+ +||||++.+.|++|++|+||.|++++.++++++...+..... .........+|.. ....
T Consensus 178 leIfrt~~-kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (364)
T KOG1082|consen 178 LEVFRTPE-KGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHLREYLDDDCDAYSIADREWVDESPVGNTFVAPSLPG 256 (364)
T ss_pred eEEEecCC-ceeeecccccccCCCeeEEEeeEecChHHhhhccccccccccccccchhhhcccccccccccccccccccc
Confidence 79999987 999999999999999999999999999999877543321111 1001111111211 1123
Q ss_pred cCCccEEEeccccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC----CCC---C
Q 037821 70 RDEEALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS----DHD---H 142 (160)
Q Consensus 70 ~~~~~~~id~~~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~----~~~---~ 142 (160)
.....+.|||...||++|||||||. ||+.+..+..+..+...++++|+|+++|.|+||||+||+..+. ... .
T Consensus 257 ~~~~~~~ida~~~GNv~RfinHSC~-PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~ 335 (364)
T KOG1082|consen 257 GPGRELLIDAKPHGNVARFINHSCS-PNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAYKLLVQDGANIYT 335 (364)
T ss_pred CCCcceEEchhhcccccccccCCCC-ccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccccccccccccccc
Confidence 3456799999999999999999996 9999999999988889999999999999999999999997754 111 1
Q ss_pred CCCCeeeecCCCCcccC
Q 037821 143 PIKAFHCCCGSEFCRDV 159 (160)
Q Consensus 143 ~~~~~~C~C~~~~Cr~~ 159 (160)
......|.|++.+||+.
T Consensus 336 ~~~~~~c~c~~~~cr~~ 352 (364)
T KOG1082|consen 336 PVMKKNCNCGLEKCRGL 352 (364)
T ss_pred cccchhhcCCCHHhCcc
Confidence 34578999999999985
No 4
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.96 E-value=7.1e-28 Score=160.11 Aligned_cols=114 Identities=44% Similarity=0.756 Sum_probs=92.2
Q ss_pred eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhcc-CCCCccceeeecCcccccccccCCccEEEecc
Q 037821 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSS-GSERHTYPVTLDADWGSERILRDEEALCLDAT 80 (160)
Q Consensus 2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 80 (160)
++++..+ ++|+||||+++|++|++|++|.|.++...+......... ......|.+.... .++||+.
T Consensus 2 ~~~~~~~-~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~id~~ 68 (116)
T smart00317 2 LEVFKSP-GKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDS------------DLCIDAR 68 (116)
T ss_pred cEEEecC-CCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCC------------CEEEeCC
Confidence 5677774 899999999999999999999999999888776643111 1111345444432 3799999
Q ss_pred ccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeC
Q 037821 81 FCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDY 133 (160)
Q Consensus 81 ~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y 133 (160)
..+|++|||||||. ||+.+......+.. ++.++|+|||++|||||++|
T Consensus 69 ~~~~~~~~iNHsc~-pN~~~~~~~~~~~~----~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCE-PNCELLFVEVNGDS----RIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCC-CCEEEEEEEECCCc----EEEEEECCCcCCCCEEeecC
Confidence 99999999999996 99999887765432 79999999999999999998
No 5
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=99.92 E-value=2.8e-25 Score=179.15 Aligned_cols=115 Identities=28% Similarity=0.444 Sum_probs=103.0
Q ss_pred EeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccccCCe
Q 037821 6 LTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNV 85 (160)
Q Consensus 6 ~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~gn~ 85 (160)
-.++..|||+|+++.+.|+++|.||+|++|+..|+++|...++.. ..+|.|.+..+ ++||++..||.
T Consensus 599 apSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~-~cSflFnln~d------------yviDs~rkGnk 665 (739)
T KOG1079|consen 599 APSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRY-MCSFLFNLNND------------YVIDSTRKGNK 665 (739)
T ss_pred chhhccccceeeccccCCCceeeeecceeccchhhhhcccccccc-cceeeeecccc------------ceEeeeeecch
Confidence 356789999999999999999999999999999999998877655 46788877765 79999999999
Q ss_pred eeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC
Q 037821 86 ARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS 138 (160)
Q Consensus 86 ~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~ 138 (160)
+||+|||-+ |||....+.+.+.. ++.|+|.|.|++|||||+||.++-.
T Consensus 666 ~rFANHS~n-PNCYAkvm~V~Gdh----RIGifAkRaIeagEELffDYrYs~~ 713 (739)
T KOG1079|consen 666 IRFANHSFN-PNCYAKVMMVAGDH----RIGIFAKRAIEAGEELFFDYRYSPE 713 (739)
T ss_pred hhhccCCCC-CCcEEEEEEecCCc----ceeeeehhhcccCceeeeeeccCcc
Confidence 999999997 99999998888776 8999999999999999999986543
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.88 E-value=6.9e-24 Score=177.44 Aligned_cols=119 Identities=37% Similarity=0.636 Sum_probs=102.4
Q ss_pred eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccc
Q 037821 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATF 81 (160)
Q Consensus 2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 81 (160)
|++|+.. .+||||.|++.|++||+|+||.|++++.++.+.+..-..-...+.|...++.+ .++|+..
T Consensus 1180 L~v~~gp-~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~------------l~id~~R 1246 (1306)
T KOG1083|consen 1180 LEVFRGP-KKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPG------------LFIDIPR 1246 (1306)
T ss_pred cceeccC-CCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCcc------------ccCChhh
Confidence 7889885 59999999999999999999999999999887774433445556666666664 8999999
Q ss_pred cCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC
Q 037821 82 CGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS 138 (160)
Q Consensus 82 ~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~ 138 (160)
++|.+||+||+|. |||+++.|.+.+. +|+.++|+|||.+|||||+||+....
T Consensus 1247 ~~n~~RfinhscK-PNc~~qkwSVNG~----~Rv~L~A~rDi~kGEELtYDYN~ks~ 1298 (1306)
T KOG1083|consen 1247 MGNGARFINHSCK-PNCEMQKWSVNGE----YRVGLFALRDLPKGEELTYDYNFKSF 1298 (1306)
T ss_pred ccccccccccccC-CCCccccccccce----eeeeeeecCCCCCCceEEEecccccc
Confidence 9999999999997 9999999998765 59999999999999999999985443
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.87 E-value=4.6e-22 Score=147.20 Aligned_cols=122 Identities=33% Similarity=0.527 Sum_probs=99.2
Q ss_pred CeEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCC-CCccceeeecCcccccccccCCccEEEec
Q 037821 1 MLQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGS-ERHTYPVTLDADWGSERILRDEEALCLDA 79 (160)
Q Consensus 1 ~l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 79 (160)
|++++.. +||.||+|+..+.+|+||.||.|.++.-.++..++..|... ....|.+-+. +....++||+
T Consensus 258 l~~~~~d--gKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~---------h~sk~yCiDA 326 (392)
T KOG1085|consen 258 LLEVYKD--GKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFE---------HNSKKYCIDA 326 (392)
T ss_pred eeEEeec--cccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeee---------ccCeeeeeec
Confidence 3555555 69999999999999999999999999999999988877533 3334433332 2334689999
Q ss_pred cccCC-eeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC
Q 037821 80 TFCGN-VARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS 138 (160)
Q Consensus 80 ~~~gn-~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~ 138 (160)
+.-.+ .+|.||||-. +|+....+.+++. |+++++|.|||.+||||++|||+-..
T Consensus 327 T~et~~lGRLINHS~~-gNl~TKvv~Idg~----pHLiLvA~rdIa~GEELlYDYGDRSk 381 (392)
T KOG1085|consen 327 TKETPWLGRLINHSVR-GNLKTKVVEIDGS----PHLILVARRDIAQGEELLYDYGDRSK 381 (392)
T ss_pred ccccccchhhhccccc-CcceeeEEEecCC----ceEEEEeccccccchhhhhhccccch
Confidence 98555 7999999997 9999999888876 59999999999999999999997543
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.83 E-value=4.2e-21 Score=157.97 Aligned_cols=84 Identities=39% Similarity=0.665 Sum_probs=75.8
Q ss_pred ccEEEeccccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecC
Q 037821 73 EALCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCG 152 (160)
Q Consensus 73 ~~~~id~~~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~ 152 (160)
.-++|||...||++||+||||. ||+.+++|.++.++.+.|.+.|||.+-|++|.|||+||++... ....+...|.||
T Consensus 1177 ~~yvIDAk~eGNlGRfLNHSC~-PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g--~v~~keL~C~CG 1253 (1262)
T KOG1141|consen 1177 PLYVIDAKQEGNLGRFLNHSCD-PNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQG--QVATKELTCHCG 1253 (1262)
T ss_pred ceEEEecccccchhhhhccCCC-ccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccc--ccccceEEEecC
Confidence 3589999999999999999995 9999999999999999999999999999999999999986543 233457999999
Q ss_pred CCCcccC
Q 037821 153 SEFCRDV 159 (160)
Q Consensus 153 ~~~Cr~~ 159 (160)
+.+|||+
T Consensus 1254 a~~Crgr 1260 (1262)
T KOG1141|consen 1254 AENCRGR 1260 (1262)
T ss_pred hhhhhcc
Confidence 9999996
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.78 E-value=2.6e-20 Score=151.33 Aligned_cols=140 Identities=33% Similarity=0.582 Sum_probs=110.0
Q ss_pred EEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccccC
Q 037821 4 VFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCG 83 (160)
Q Consensus 4 vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~g 83 (160)
++.....+|+|+||...|++|++|.+|.|+++...++..+.............+.+... ...+|+...|
T Consensus 335 ~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~d~~~~g 403 (480)
T COG2940 335 VVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDK-----------DKVRDSQKAG 403 (480)
T ss_pred hhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhcccc-----------chhhhhhhcc
Confidence 34455679999999999999999999999999998887776655333222222222221 4689999999
Q ss_pred CeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCC----CCCCCeeeecCCCCcccC
Q 037821 84 NVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHD----HPIKAFHCCCGSEFCRDV 159 (160)
Q Consensus 84 n~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~----~~~~~~~C~C~~~~Cr~~ 159 (160)
+.+||+||||. ||+........+ ..++.++|++||.+||||+++|+...+... .....+.|.|++..|+++
T Consensus 404 ~~~r~~nHS~~-pN~~~~~~~~~g----~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 404 DVARFINHSCT-PNCEASPIEVNG----IFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred cccceeecCCC-CCcceecccccc----cceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 99999999997 999987655443 348889999999999999999998887754 223479999999999874
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.75 E-value=9.1e-19 Score=121.58 Aligned_cols=55 Identities=25% Similarity=0.150 Sum_probs=42.7
Q ss_pred EEEeccccCCeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCC
Q 037821 75 LCLDATFCGNVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYG 134 (160)
Q Consensus 75 ~~id~~~~gn~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~ 134 (160)
...++....+.+.++||||. |||.+......... .+.++|.|||++|||||++||
T Consensus 108 ~~~~~~~l~p~~d~~NHsc~-pn~~~~~~~~~~~~----~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 108 DDRDGIALYPFADMLNHSCD-PNCEVSFDFDGDGG----CLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEEEETGGGGSEEESS-TSEEEEEEEETTTT----EEEEEESS-B-TTSBEEEEST
T ss_pred ccccccccCcHhHheccccc-cccceeeEeecccc----eEEEEECCccCCCCEEEEEEC
Confidence 34455666678999999996 99998766543333 899999999999999999997
No 11
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=99.63 E-value=2.9e-16 Score=119.91 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=90.8
Q ss_pred CceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccccCCeeeee
Q 037821 10 HKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATFCGNVARFI 89 (160)
Q Consensus 10 ~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~gn~~rfi 89 (160)
..|--|+|++.+.+|+-|--.+|.|..-.+++++..+.....+.+..+..... .+..+-..++||
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---------------caqLwLGPaafI 200 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---------------CAQLWLGPAAFI 200 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---------------hhhheeccHHhh
Confidence 56888999999999999999999997777777665554444433333322211 133445678999
Q ss_pred ecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCccc
Q 037821 90 NHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRD 158 (160)
Q Consensus 90 NHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~ 158 (160)
||.|. |||+|+. .+.+ .+.+.++|||+||||||.-|+.+|+..+ +..|.|-+..=+|
T Consensus 201 NHDCr-pnCkFvs---~g~~----tacvkvlRDIePGeEITcFYgs~fFG~~----N~~CeC~TCER~g 257 (453)
T KOG2589|consen 201 NHDCR-PNCKFVS---TGRD----TACVKVLRDIEPGEEITCFYGSGFFGEN----NEECECVTCERRG 257 (453)
T ss_pred cCCCC-CCceeec---CCCc----eeeeehhhcCCCCceeEEeecccccCCC----CceeEEeeccccc
Confidence 99998 9999863 2222 7889999999999999999999999987 6788886554333
No 12
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=99.09 E-value=2e-11 Score=98.59 Aligned_cols=117 Identities=32% Similarity=0.568 Sum_probs=85.4
Q ss_pred EeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCC-ccceeeecCcccccccccCCccEEEeccccCCeeeeeecCCC
Q 037821 16 RTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSER-HTYPVTLDADWGSERILRDEEALCLDATFCGNVARFINHRCF 94 (160)
Q Consensus 16 ~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~id~~~~gn~~rfiNHSC~ 94 (160)
+|..++.++ .|+++...+...+......... ..|...+..+ ..||+...+|.+||+||||+
T Consensus 319 ~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~------------~~id~~~~~n~sr~~nh~~~ 380 (463)
T KOG1081|consen 319 TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKD------------RIIDAGPKGNYSRFLNHSCQ 380 (463)
T ss_pred hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhcc------------cccccccccchhhhhcccCC
Confidence 556666666 6777777766555443333332 2232323332 38999999999999999997
Q ss_pred CCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCCCCCCCCCCeeeecCCCCcccCC
Q 037821 95 DANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFSDHDHPIKAFHCCCGSEFCRDVK 160 (160)
Q Consensus 95 ~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~Cr~~~ 160 (160)
||+.-..+..... .++.++|.++|++|+|+|++|...-... ...|.|++.+|.+++
T Consensus 381 -~~v~~~k~~~~~~----t~~~~~a~~~i~~g~e~t~~~n~~~~~~-----~~~~~~~~e~~~~~~ 436 (463)
T KOG1081|consen 381 -PNVETEKWQVIGD----TRVGLFAPRQIEAGEELTFNYNGNCEGN-----EKRCCCGSENCTETK 436 (463)
T ss_pred -Cceeechhheecc----cccccccccccccchhhhheeeccccCC-----cceEeecccccccCC
Confidence 9998877766544 3888999999999999999998765443 479999999998864
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.85 E-value=3.1e-09 Score=84.29 Aligned_cols=108 Identities=23% Similarity=0.320 Sum_probs=76.5
Q ss_pred eCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHhhhhccCCCCccceeeecCcccccccccCCccEEEeccc--cCC
Q 037821 7 TDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYERNMQSSGSERHTYPVTLDADWGSERILRDEEALCLDATF--CGN 84 (160)
Q Consensus 7 ~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~gn 84 (160)
..+..|.||++...|++|+--+.|.|+++... . .+.....|.|.+... +..-.+||+.. ..|
T Consensus 36 sv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~-~-------~~~~n~~y~W~I~~~--------d~~~~~iDg~d~~~sN 99 (396)
T KOG2461|consen 36 SVPVTGLGVWSNASILPGTSFGPFEGEIIASI-D-------SKSANNRYMWEIFSS--------DNGYEYIDGTDEEHSN 99 (396)
T ss_pred ccCCccccccccccccCcccccCccCcccccc-c-------cccccCcceEEEEeC--------CCceEEeccCChhhcc
Confidence 44556799999999999999999999981111 1 122345566665432 01237899877 779
Q ss_pred eeeeeecCCCC--CceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC
Q 037821 85 VARFINHRCFD--ANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS 138 (160)
Q Consensus 85 ~~rfiNHSC~~--PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~ 138 (160)
|+||+|-++.+ -|.... .. .. .+.++|+|+|++||||.++|+.++-
T Consensus 100 WmRYV~~Ar~~eeQNL~A~---Q~-~~----~Ifyrt~r~I~p~eELlVWY~~e~~ 147 (396)
T KOG2461|consen 100 WMRYVNSARSEEEQNLLAF---QI-GE----NIFYRTIRDIRPNEELLVWYGSEYA 147 (396)
T ss_pred eeeeecccCChhhhhHHHH---hc-cC----ceEEEecccCCCCCeEEEEeccchH
Confidence 99999988852 354321 11 11 7889999999999999999998874
No 14
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=96.82 E-value=0.00063 Score=32.72 Aligned_cols=14 Identities=36% Similarity=0.902 Sum_probs=12.5
Q ss_pred CeeeecCCCCcccC
Q 037821 146 AFHCCCGSEFCRDV 159 (160)
Q Consensus 146 ~~~C~C~~~~Cr~~ 159 (160)
.+.|.||+.+|||.
T Consensus 2 ~~~C~CGs~~CRG~ 15 (26)
T smart00508 2 KQPCLCGAPNCRGF 15 (26)
T ss_pred CeeeeCCCccccce
Confidence 57999999999985
No 15
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=95.97 E-value=0.014 Score=47.43 Aligned_cols=58 Identities=31% Similarity=0.520 Sum_probs=39.4
Q ss_pred eeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCC-eeeeeCCCCCCCCCC------CCCCeeeecCCC
Q 037821 88 FINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASE-ELTWDYGIDFSDHDH------PIKAFHCCCGSE 154 (160)
Q Consensus 88 fiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~Ge-Elt~~Y~~~~~~~~~------~~~~~~C~C~~~ 154 (160)
++||||. ||+. +..++. ...+.+...+.+++ ||++.|-...+.... ..+.|.|.|...
T Consensus 208 ~~~hsC~-pn~~---~~~~~~-----~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc 272 (482)
T KOG2084|consen 208 LFNHSCF-PNIS---VIFDGR-----GLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRC 272 (482)
T ss_pred hcccCCC-CCeE---EEECCc-----eeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCC
Confidence 7899997 9998 223332 45577778888876 999999877765421 112377777653
No 16
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=94.86 E-value=0.015 Score=50.11 Aligned_cols=41 Identities=46% Similarity=0.759 Sum_probs=35.6
Q ss_pred eEEEEeCCCceeEEEeCCCCCCCCeeEEEEeEEEChHHHHHh
Q 037821 2 LQVFLTDRHKGWGLRTLQDLPKGSFVCEYVGEILTNTELYER 43 (160)
Q Consensus 2 l~vf~~~~~~G~Gv~A~~~i~~g~~I~ey~G~i~~~~~~~~~ 43 (160)
|++|++. .+|||++...+|.+|.||+.|.|.+++....+..
T Consensus 801 lq~fkt~-~kGWg~rclddi~~g~fVciy~g~~l~~~~sdks 841 (1262)
T KOG1141|consen 801 LQRFKTI-HKGWGRRCLDDITGGNFVCIYPGGALLHQISDKS 841 (1262)
T ss_pred eeecccc-ccccceEeeeecCCceEEEEecchhhhhhhchhh
Confidence 7888886 5899999999999999999999999887765443
No 17
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=94.47 E-value=0.033 Score=45.79 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=30.0
Q ss_pred eeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCC
Q 037821 88 FINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGI 135 (160)
Q Consensus 88 fiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~ 135 (160)
+.||++. + ........++ .+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~-~----~~~~~~~~d~---~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPE-V----IKAGYNQEDE---AVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCch-h----ccccccCCCC---cEEEEEeeeecCCCeEEEecCC
Confidence 5799996 6 1122333332 7889999999999999999986
No 18
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.23 Score=40.31 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=39.3
Q ss_pred CeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCCCCCC
Q 037821 84 NVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYGIDFS 138 (160)
Q Consensus 84 n~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~ 138 (160)
.++..++||-. ||.++.+...-.++- ..-+++-+++...|||+|-|+.....
T Consensus 203 efGsrvrHsde-Pnf~~aPf~fmPq~v--aYsimwp~k~~~tgeE~trDfasg~~ 254 (631)
T KOG2155|consen 203 EFGSRVRHSDE-PNFRIAPFMFMPQNV--AYSIMWPTKPVNTGEEITRDFASGVI 254 (631)
T ss_pred hhhhhhccCCC-Ccceeeeheecchhc--ceeEEeeccCCCCchHHHHHHhhcCC
Confidence 35567899997 999998876655432 24457899999999999999865443
No 19
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=88.37 E-value=0.33 Score=28.00 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=12.3
Q ss_pred EEEECCCCCCCCeeeee
Q 037821 116 AFFTTRDVSASEELTWD 132 (160)
Q Consensus 116 ~~~A~rdI~~GeElt~~ 132 (160)
+++|.+||++|+.|+-+
T Consensus 3 vvVA~~di~~G~~i~~~ 19 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAE 19 (63)
T ss_dssp EEEESSTB-TT-BECTT
T ss_pred EEEEeCccCCCCEEccC
Confidence 47899999999999643
No 20
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.03 E-value=1.3 Score=35.51 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.0
Q ss_pred CceeEEEeCCCCCCCCeeEEEEeEE
Q 037821 10 HKGWGLRTLQDLPKGSFVCEYVGEI 34 (160)
Q Consensus 10 ~~G~Gv~A~~~i~~g~~I~ey~G~i 34 (160)
..|.|++|+++|++|+.++.|.+.-
T Consensus 39 ~~G~g~vAtesIkkgE~Lf~~prds 63 (466)
T KOG1338|consen 39 IAGAGIVATESIKKGESLFAYPRDS 63 (466)
T ss_pred hcccceeeehhhcCCceEEEecCcc
Confidence 4589999999999999999987763
No 21
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=76.27 E-value=2 Score=24.59 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.0
Q ss_pred EEEECCCCCCCCeeee
Q 037821 116 AFFTTRDVSASEELTW 131 (160)
Q Consensus 116 ~~~A~rdI~~GeElt~ 131 (160)
+++|.++|.+|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 3779999999999985
No 22
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=70.25 E-value=17 Score=23.49 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCCCeeeeeCCCC
Q 037821 114 HLAFFTTRDVSASEELTWDYGID 136 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~Y~~~ 136 (160)
.+.+.-.+.|..||++++.|..+
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~p 98 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTKN 98 (101)
T ss_pred EEEEEecccccCCCEEEEEeeCC
Confidence 67788899999999999999765
No 23
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=4.6 Score=32.56 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=29.3
Q ss_pred eeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeeeCC
Q 037821 85 VARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWDYG 134 (160)
Q Consensus 85 ~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~ 134 (160)
.+-|+||.-...|+... ++. + .+-++|.|+|++|+|+.-.||
T Consensus 218 ~ad~lNhd~~k~nanl~---y~~-N----cL~mva~r~iekgdev~n~dg 259 (466)
T KOG1338|consen 218 IADFLNHDGLKANANLR---YED-N----CLEMVADRNIEKGDEVDNSDG 259 (466)
T ss_pred hhhhhccchhhccccee---ccC-c----ceeeeecCCCCCccccccccc
Confidence 56788996432333221 332 2 667999999999999999997
No 24
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by Pfam model pfam08666.
Probab=45.54 E-value=11 Score=24.71 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.8
Q ss_pred EEECCCCCCCCeeeee
Q 037821 117 FFTTRDVSASEELTWD 132 (160)
Q Consensus 117 ~~A~rdI~~GeElt~~ 132 (160)
++|.++|++||-|+-+
T Consensus 2 ~Va~r~I~~G~~i~~~ 17 (122)
T TIGR03170 2 VVAKRPLKRGEVISPE 17 (122)
T ss_pred EEECcccCCCCCcCHH
Confidence 6799999999988764
No 25
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=43.39 E-value=13 Score=29.31 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.2
Q ss_pred EEEEEECCCCCCCCeeeeeC
Q 037821 114 HLAFFTTRDVSASEELTWDY 133 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~Y 133 (160)
+-.++|.+||++||.||.+=
T Consensus 277 rrsl~a~~di~~G~~lt~~~ 296 (329)
T TIGR03569 277 RKSLVAAKDIKKGEIFTEDN 296 (329)
T ss_pred ceEEEEccCcCCCCEecHHh
Confidence 55689999999999999864
No 26
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=36.82 E-value=34 Score=20.31 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCCCeeeeeC
Q 037821 114 HLAFFTTRDVSASEELTWDY 133 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~Y 133 (160)
.-++++.|+|+.||.+.+--
T Consensus 30 ~giVFS~rPl~~~E~~~v~I 49 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRI 49 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEE
T ss_pred ceEEEecCCccCCCEEEEEE
Confidence 45688999999999988753
No 27
>PHA03094 dUTPase; Provisional
Probab=36.58 E-value=69 Score=21.96 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=22.2
Q ss_pred eCCCceeEEEeCCC--CCCCCeeEEEEeEEEC
Q 037821 7 TDRHKGWGLRTLQD--LPKGSFVCEYVGEILT 36 (160)
Q Consensus 7 ~~~~~G~Gv~A~~~--i~~g~~I~ey~G~i~~ 36 (160)
+....|+=|+|.++ |++|+...-.+|+.+.
T Consensus 22 ~~~~aG~Dl~a~~~~~i~P~~~~lv~Tg~~i~ 53 (144)
T PHA03094 22 SPKSAGYDLYSAYDYTVPPKERILVKTDISLS 53 (144)
T ss_pred CCCcccEEEecCCCeEECCCCEEEEEcCeEEE
Confidence 33457999999766 7899988777776654
No 28
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.12 E-value=27 Score=27.53 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=17.3
Q ss_pred EEEEEECCCCCCCCeeeeeC
Q 037821 114 HLAFFTTRDVSASEELTWDY 133 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~Y 133 (160)
+-.++|.+||++||-||.+-
T Consensus 275 rrsl~a~~di~~G~~it~~~ 294 (327)
T TIGR03586 275 RRSLYVVKDIKKGETFTEEN 294 (327)
T ss_pred eEEEEEccCcCCCCEecHHh
Confidence 55689999999999999764
No 29
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=34.66 E-value=15 Score=21.13 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.8
Q ss_pred ECCCCCCCCeeeeeCCCCC
Q 037821 119 TTRDVSASEELTWDYGIDF 137 (160)
Q Consensus 119 A~rdI~~GeElt~~Y~~~~ 137 (160)
..|-|.||+.+|.||..+-
T Consensus 25 ~~Rvi~Pg~~vTmDyr~dR 43 (60)
T PF11720_consen 25 TVRVIRPGDAVTMDYRPDR 43 (60)
T ss_pred ceEEeCCCCcCcccCCCCc
Confidence 5677889999999998763
No 30
>TIGR00049 Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.
Probab=34.01 E-value=24 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=23.5
Q ss_pred EEECCCCCCCCeeeeeCCCCCCCCC----CCCCCeeeecCCC
Q 037821 117 FFTTRDVSASEELTWDYGIDFSDHD----HPIKAFHCCCGSE 154 (160)
Q Consensus 117 ~~A~rdI~~GeElt~~Y~~~~~~~~----~~~~~~~C~C~~~ 154 (160)
++...++.-=+.+++||..+..... .+.....|-||++
T Consensus 61 ~id~~~~~~l~~~~IDy~~~~~~~~f~i~nPn~~~~c~cg~s 102 (105)
T TIGR00049 61 VVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKS 102 (105)
T ss_pred EEeHHHHhhhCCCEEEEeecCCcceEEEECCCCCccCCCCcC
Confidence 3444455544569999987643321 2445678999975
No 31
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=33.02 E-value=29 Score=24.36 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCCCeeeee
Q 037821 114 HLAFFTTRDVSASEELTWD 132 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~ 132 (160)
.-+++|.++|.+||-|+-+
T Consensus 33 v~vvVa~r~I~rGevIt~~ 51 (160)
T PRK06005 33 IAFVVPSTTIYPGETISDS 51 (160)
T ss_pred EEEEEEccCcCCCCCcCHH
Confidence 4468899999999999865
No 32
>PF14100 PmoA: Methane oxygenase PmoA
Probab=32.37 E-value=1.4e+02 Score=22.76 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=26.9
Q ss_pred eeeeecCCCCCceeEEEEEecCCCCcc--eEEEEEECCCCCCCCeeeeeCCC
Q 037821 86 ARFINHRCFDANLIDIPVEIETPDRHY--YHLAFFTTRDVSASEELTWDYGI 135 (160)
Q Consensus 86 ~rfiNHSC~~PN~~~~~~~~~~~~~~~--~~~~~~A~rdI~~GeElt~~Y~~ 135 (160)
.-+++|.-+ ||--. .|.+.+..-.. +-.....-..|++||.|++.|..
T Consensus 203 i~~~dhP~N-~~~P~-~W~vR~~g~~~~~p~~~~~~~~~l~~G~~l~~rYr~ 252 (271)
T PF14100_consen 203 IAILDHPSN-PNYPT-PWHVRGYGLFGANPAPAFDGPLTLPPGETLTLRYRV 252 (271)
T ss_pred EEEEeCCCC-CCCCc-ceEEeccCcceecccccccCceecCCCCeEEEEEEE
Confidence 347788765 55442 24443322100 11112456778999999999954
No 33
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=32.16 E-value=39 Score=22.46 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=13.9
Q ss_pred EECCCCCCCCeee-eeCCC
Q 037821 118 FTTRDVSASEELT-WDYGI 135 (160)
Q Consensus 118 ~A~rdI~~GeElt-~~Y~~ 135 (160)
..++|+++||++. ++|..
T Consensus 6 ~cL~~~~~Ge~~lLlsy~p 24 (117)
T PF06718_consen 6 HCLRDAEPGEELLLLSYRP 24 (117)
T ss_pred EecccCCCCCeEEEEecCC
Confidence 4789999999965 56754
No 34
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=32.01 E-value=31 Score=23.63 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCCCeeeee
Q 037821 114 HLAFFTTRDVSASEELTWD 132 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~ 132 (160)
.-+++|.++|.+||-|+-+
T Consensus 19 ~~VvVA~r~L~rGevIt~~ 37 (141)
T PRK12618 19 AETVVAARTIRALTVIGAE 37 (141)
T ss_pred eEEEEEccCcCCCCCcCHH
Confidence 3357899999999988754
No 35
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=31.01 E-value=20 Score=12.09 Aligned_cols=6 Identities=50% Similarity=1.415 Sum_probs=3.4
Q ss_pred CCceeE
Q 037821 9 RHKGWG 14 (160)
Q Consensus 9 ~~~G~G 14 (160)
.+.|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 355665
No 36
>PLN02547 dUTP pyrophosphatase
Probab=29.90 E-value=1.2e+02 Score=21.14 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=21.1
Q ss_pred CCceeEEEeCCC--CCCCCeeEEEEeEEEC
Q 037821 9 RHKGWGLRTLQD--LPKGSFVCEYVGEILT 36 (160)
Q Consensus 9 ~~~G~Gv~A~~~--i~~g~~I~ey~G~i~~ 36 (160)
...|+=|++.++ |++++.+.--+|+.+.
T Consensus 35 g~AG~DL~~~~d~~i~P~~~~li~tgi~v~ 64 (157)
T PLN02547 35 LAAGYDLSSAYDTVVPARGKALVPTDLSIA 64 (157)
T ss_pred CccCeeEecCCCeEECCCCEEEEEeceEEE
Confidence 356899999766 7889888777777654
No 37
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=29.76 E-value=34 Score=22.35 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=21.5
Q ss_pred EECCCCCCCCeeeeeCCCCCCCCC----CCCCCeeeecCCC
Q 037821 118 FTTRDVSASEELTWDYGIDFSDHD----HPIKAFHCCCGSE 154 (160)
Q Consensus 118 ~A~rdI~~GeElt~~Y~~~~~~~~----~~~~~~~C~C~~~ 154 (160)
+....+.-=+.+++||..+..... .|.....|-||++
T Consensus 72 id~~s~~~l~g~~IDy~~~~~~~~F~f~NPn~~~~CgCg~S 112 (115)
T PRK13623 72 VDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSS 112 (115)
T ss_pred EcHHHHHHhCCCEEEeecCCCcceEEEECCCCCcCCCCCcC
Confidence 343333333446899976654432 2445678999965
No 38
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=29.73 E-value=99 Score=21.72 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=19.5
Q ss_pred CeeeeeecCCCCCceeEEEEEecCCCCcceEEEEEECCCCCCCCeeeee
Q 037821 84 NVARFINHRCFDANLIDIPVEIETPDRHYYHLAFFTTRDVSASEELTWD 132 (160)
Q Consensus 84 n~~rfiNHSC~~PN~~~~~~~~~~~~~~~~~~~~~A~rdI~~GeElt~~ 132 (160)
...+|+|+|.. .+...++..++. -..+ ..++||++..++
T Consensus 15 s~V~F~N~s~r--~V~v~Wldy~G~------~~~Y--~~L~Pg~~~~~~ 53 (156)
T PF01847_consen 15 SFVRFVNRSPR--TVDVYWLDYDGK------PVPY--GTLKPGQGRRQN 53 (156)
T ss_dssp EEEEEEE-SSS---EEEEEE-TTS-------EEE-----B-TTEEEEEE
T ss_pred eEEEEEECCCC--EEEEEEEcCCCc------Eeec--cccCCCCeEEcc
Confidence 45689999875 455554444442 2222 458888887765
No 39
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=29.57 E-value=43 Score=27.06 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.3
Q ss_pred CceeEEEeCCCCCCCCeeEEEEeEEE
Q 037821 10 HKGWGLRTLQDLPKGSFVCEYVGEIL 35 (160)
Q Consensus 10 ~~G~Gv~A~~~i~~g~~I~ey~G~i~ 35 (160)
..|.|++|+++|++|++|.+-...+.
T Consensus 23 ~~Gr~~~a~~~i~~g~~i~~e~p~~~ 48 (482)
T KOG2084|consen 23 ELGRGLVATQAIEAGEVILEEEPLVV 48 (482)
T ss_pred ccCcceeeecccCCCceEEecCccee
Confidence 57999999999999998887555443
No 40
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.26 E-value=1.1e+02 Score=19.58 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.9
Q ss_pred eeEEEeC-----CCCCCCCeeEEEEeEEEChHHHHHhhh
Q 037821 12 GWGLRTL-----QDLPKGSFVCEYVGEILTNTELYERNM 45 (160)
Q Consensus 12 G~Gv~A~-----~~i~~g~~I~ey~G~i~~~~~~~~~~~ 45 (160)
-.|+|.+ ..++.|+-|--|...+.++.++.+.-.
T Consensus 51 ~~GI~~k~~kl~~~l~dgDRVEIyRPLlaDPKE~RR~Ra 89 (99)
T COG2914 51 KVGIYSKPVKLDDELHDGDRVEIYRPLLADPKEARRKRA 89 (99)
T ss_pred ceeEEccccCccccccCCCEEEEecccccChHHHHHHHH
Confidence 4677765 347889999999999999999866543
No 41
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.16 E-value=50 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.3
Q ss_pred eeEEEeCCCCCCCCeeE
Q 037821 12 GWGLRTLQDLPKGSFVC 28 (160)
Q Consensus 12 G~Gv~A~~~i~~g~~I~ 28 (160)
..+|+|+++|++|+.|.
T Consensus 275 rrsl~a~~di~~G~~it 291 (327)
T TIGR03586 275 RRSLYVVKDIKKGETFT 291 (327)
T ss_pred eEEEEEccCcCCCCEec
Confidence 67999999999999874
No 42
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=28.11 E-value=42 Score=19.71 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=11.5
Q ss_pred eeeecCCCCCceeEEEE
Q 037821 87 RFINHRCFDANLIDIPV 103 (160)
Q Consensus 87 rfiNHSC~~PN~~~~~~ 103 (160)
.-+||+|...|..+..+
T Consensus 41 ~~l~~tCn~qNLTLinV 57 (63)
T PF02440_consen 41 PELNHTCNGQNLTLINV 57 (63)
T ss_pred cceEeEecCCeEEEEEe
Confidence 45799996577665544
No 43
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=27.52 E-value=43 Score=21.48 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=22.5
Q ss_pred EEECCCCCCCCeeeeeCCCCCCCC----CCCCCCeeeecCCC
Q 037821 117 FFTTRDVSASEELTWDYGIDFSDH----DHPIKAFHCCCGSE 154 (160)
Q Consensus 117 ~~A~rdI~~GeElt~~Y~~~~~~~----~~~~~~~~C~C~~~ 154 (160)
++....+.-=+..++||..+.... +.+.....|-||++
T Consensus 61 ~id~~s~~~l~g~~IDy~~~~~~~~F~~~nPna~~~CgCg~S 102 (105)
T TIGR02011 61 VIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGES 102 (105)
T ss_pred EEcHHHhHHhCCCEEEEecCCCcceEEEECCCCCccCCCCCC
Confidence 344444444455689997664333 22444678999964
No 44
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=26.18 E-value=51 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.3
Q ss_pred EEECCCCCCCCeeeeeCCCCC
Q 037821 117 FFTTRDVSASEELTWDYGIDF 137 (160)
Q Consensus 117 ~~A~rdI~~GeElt~~Y~~~~ 137 (160)
..++.+++.|++|++.|+...
T Consensus 43 aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 43 AKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred cccccccCCCCEEEEEeCCcE
Confidence 479999999999999998654
No 45
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=26.01 E-value=63 Score=22.28 Aligned_cols=21 Identities=38% Similarity=0.798 Sum_probs=16.7
Q ss_pred CCCeeeeeCCCCCCCCCCCCCCeeeecCCCC
Q 037821 125 ASEELTWDYGIDFSDHDHPIKAFHCCCGSEF 155 (160)
Q Consensus 125 ~GeElt~~Y~~~~~~~~~~~~~~~C~C~~~~ 155 (160)
.++.|.||+|+ +|.|.|..+.
T Consensus 94 V~~DlYIDFG~----------KFhcVC~rP~ 114 (173)
T KOG4078|consen 94 VEEDLYIDFGG----------KFHCVCKRPA 114 (173)
T ss_pred eccceEEecCC----------eEEEEEcCcC
Confidence 57889999986 6899997653
No 46
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=24.78 E-value=47 Score=25.09 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.2
Q ss_pred EEEEEECCCCCCCCeeeee
Q 037821 114 HLAFFTTRDVSASEELTWD 132 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~~ 132 (160)
.-+++|.+||.+|+.|+-+
T Consensus 36 ~~V~VA~~~I~~G~~I~~~ 54 (261)
T TIGR03177 36 VPVVVAARDLPAGTPITAE 54 (261)
T ss_pred eeEEEEcccCCCCCCCCHH
Confidence 5568899999999999855
No 47
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=23.90 E-value=50 Score=21.95 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=20.8
Q ss_pred ECCCCCCCCeeeeeCCCCCCCCC----CCCCCeeeecCCC
Q 037821 119 TTRDVSASEELTWDYGIDFSDHD----HPIKAFHCCCGSE 154 (160)
Q Consensus 119 A~rdI~~GeElt~~Y~~~~~~~~----~~~~~~~C~C~~~ 154 (160)
....+.-=+..++||..+..... .+.....|-||.+
T Consensus 80 d~~s~~~L~g~~IDy~~~~~~~gF~f~NPna~~~CgCG~S 119 (122)
T PRK09504 80 PLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGES 119 (122)
T ss_pred cHHHHHhhCCcEEEeecCCCcceEEEECCCCCCCcCCCCC
Confidence 33333333458899976643332 2334678999965
No 48
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=23.89 E-value=69 Score=20.80 Aligned_cols=19 Identities=37% Similarity=0.910 Sum_probs=14.6
Q ss_pred CCeeeeeCCCCCCCCCCCCCCeeeecCCC
Q 037821 126 SEELTWDYGIDFSDHDHPIKAFHCCCGSE 154 (160)
Q Consensus 126 GeElt~~Y~~~~~~~~~~~~~~~C~C~~~ 154 (160)
++-|.||+|+ +|.|-|..+
T Consensus 36 ~ddLYIDfG~----------KFhcVc~rp 54 (104)
T PF10246_consen 36 DDDLYIDFGG----------KFHCVCKRP 54 (104)
T ss_pred cCceEEEeCC----------ceeEEEecc
Confidence 3489999996 678888754
No 49
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.36 E-value=37 Score=26.88 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.5
Q ss_pred eeEEEeCCCCCCCCeeEEE
Q 037821 12 GWGLRTLQDLPKGSFVCEY 30 (160)
Q Consensus 12 G~Gv~A~~~i~~g~~I~ey 30 (160)
-.+|+++.+|+||+.+.+-
T Consensus 289 ~Rsl~~~kdikkGe~ls~~ 307 (347)
T COG2089 289 RRSLVATKDIKKGEILSED 307 (347)
T ss_pred hhheeeecccccCcccccc
Confidence 3589999999999987543
No 50
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=21.51 E-value=1.1e+02 Score=18.95 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.3
Q ss_pred EEECCCC-CCCCeeeee
Q 037821 117 FFTTRDV-SASEELTWD 132 (160)
Q Consensus 117 ~~A~rdI-~~GeElt~~ 132 (160)
+++-|+| +|||.|.+.
T Consensus 4 i~TDr~iYrPGetV~~~ 20 (99)
T PF01835_consen 4 IQTDRPIYRPGETVHFR 20 (99)
T ss_dssp EEESSSEE-TTSEEEEE
T ss_pred EECCccCcCCCCEEEEE
Confidence 4444444 455555443
No 51
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=21.50 E-value=1.5e+02 Score=16.67 Aligned_cols=14 Identities=7% Similarity=0.271 Sum_probs=10.4
Q ss_pred CCCCCCeeeeeCCC
Q 037821 122 DVSASEELTWDYGI 135 (160)
Q Consensus 122 dI~~GeElt~~Y~~ 135 (160)
.+++|+++++.+..
T Consensus 56 ~~~~G~~v~l~~~~ 69 (75)
T PF08402_consen 56 PLEPGDEVRLSWDP 69 (75)
T ss_dssp T--TTSEEEEEEEG
T ss_pred CCCCCCEEEEEECc
Confidence 79999999998864
No 52
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=21.47 E-value=47 Score=20.65 Aligned_cols=14 Identities=36% Similarity=0.325 Sum_probs=10.8
Q ss_pred CCCCCCCCeeeeeC
Q 037821 120 TRDVSASEELTWDY 133 (160)
Q Consensus 120 ~rdI~~GeElt~~Y 133 (160)
++-+++||||+|.=
T Consensus 18 L~rV~aGEev~IT~ 31 (84)
T COG4118 18 LRRVRAGEEVIITK 31 (84)
T ss_pred HHHHhCCCEEEEee
Confidence 34568999999874
No 53
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=20.96 E-value=68 Score=17.15 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=12.7
Q ss_pred CCCCCCeeeeeCCCC
Q 037821 122 DVSASEELTWDYGID 136 (160)
Q Consensus 122 dI~~GeElt~~Y~~~ 136 (160)
.|.+|+||.+.+..+
T Consensus 20 ~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 20 GLKPGDEVEIEVEGD 34 (47)
T ss_dssp TSSTTTEEEEEEETT
T ss_pred CCCCCCEEEEEEeCC
Confidence 789999999998654
No 54
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.95 E-value=92 Score=18.34 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=12.9
Q ss_pred CeEEEEeCCCceeEEEeCC
Q 037821 1 MLQVFLTDRHKGWGLRTLQ 19 (160)
Q Consensus 1 ~l~vf~~~~~~G~Gv~A~~ 19 (160)
|+.+|.++ .|++||-..
T Consensus 1 m~vLfEta--aGyaLF~v~ 17 (67)
T PF08156_consen 1 MLVLFETA--AGYALFKVK 17 (67)
T ss_pred CEEEEcCC--CeeeeeEEe
Confidence 67788884 699999554
No 55
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=20.67 E-value=63 Score=24.07 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.0
Q ss_pred EEEEEECCCCCCCCeeee
Q 037821 114 HLAFFTTRDVSASEELTW 131 (160)
Q Consensus 114 ~~~~~A~rdI~~GeElt~ 131 (160)
.-+++|.++|.+|+-|+-
T Consensus 110 ~~VvVA~r~I~rG~~I~~ 127 (235)
T PRK07018 110 GPYVVAARPLARGEKLSA 127 (235)
T ss_pred EEEEEEccccCCCCCcCH
Confidence 346789999999999884
No 56
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.23 E-value=41 Score=18.43 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=8.7
Q ss_pred cccCCeeeeeecCC
Q 037821 80 TFCGNVARFINHRC 93 (160)
Q Consensus 80 ~~~gn~~rfiNHSC 93 (160)
....|.+|+ |||-
T Consensus 40 ~~~snear~-n~st 52 (54)
T PF06716_consen 40 NPQSNEARF-NHST 52 (54)
T ss_pred CCCcchhhc-cccc
Confidence 344678887 8874
Done!