BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037822
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 255/525 (48%), Gaps = 82/525 (15%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L+ L + N+++GD+ S NL +L++ N+F IP +G+ + L+ L +S N+++
Sbjct: 180 LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
G F + +++L++S NQ+ G I ++L L LA NK + I + +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAENKFTGEIPDFLSGACD- 294
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP-DWFWQLDLTLDELD 197
LT +++ P + + + L +L L++ S +P D ++ L LD
Sbjct: 295 ----TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLD 349
Query: 198 VAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGP-LPLWSFN----VTKLYLRDNSFSGP 250
+++NE SG +P SL + T+DLSSN+F GP LP N + +LYL++N F+G
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
IP ++ N +L++L +S N LSG IP ++S L
Sbjct: 410 IP-------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
L + N L GEIP+ + + ++ LIL N ++GE+P L NC+ ++ + L +N+L+G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV----- 425
IP WIG + +L+IL+L +N F+G IP EL +L LDL+ N +G IP +
Sbjct: 505 EIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 426 ---GNF-----------SGMKVEPPDS---VKYEGSLQVVL-----------KGSEYVFY 457
NF GMK E + ++++G L Y +
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 458 TTLYLVN-----LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
T+ N +D+S N LSG +P E+ + +L LNL N +
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 233/545 (42%), Gaps = 91/545 (16%)
Query: 5 DFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNL 64
+F G+ + S L+ L++ N+L+GD ++ L+ L + N FVG IPP L
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--L 268
Query: 65 TFLKELYLSSNQMNGKFPENF-GQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
L+ L L+ N+ G+ P+ G + LDLS N + G +
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF----------FGSCS 318
Query: 124 QSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP 183
E+++L N S +P T + +R L L L+ S +P
Sbjct: 319 LLESLALSSNNFSGELP--MDTLLKMRG----------------LKVLDLSFNEFSGELP 360
Query: 184 DWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD---LSSNSFEGPLPLWSFNVTK- 239
+ L +L LD++ N SG I +L T+ L +N F G +P N ++
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 240 --LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
L+L N SG IP G + L DL + N L G + + + ++ L TL++ N+L+
Sbjct: 421 VSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
GEIP SN ++L + +SNN L+GEIP+ IG L ++ L L NN SG +P L +C
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 358 MDSLDLGDNQLSGNIPAWI----------------------------------------- 376
+ LDL N +G IPA +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 377 -GESMPSLSI---LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK 432
E + LS + S + G P ++ LD+S+N LSG IP +G+ +
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659
Query: 433 VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNL 492
+ GS+ + L +N++DLSSN L G +P ++ L L ++L
Sbjct: 660 ILNLGHNDISGSIPDEVG--------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 493 SRNHL 497
S N+L
Sbjct: 712 SNNNL 716
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 181/408 (44%), Gaps = 84/408 (20%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLK---------------------------NLRYLELWHN 51
L+ L+L FN+ +G+LP SL L L+ L L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 52 SFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFR 111
F G IPP++ N + L L+LS N ++G P + G LS + L L N EG I +
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ---- 460
Query: 112 NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTL 171
EL K E + L FN L + P+ L N T L +
Sbjct: 461 ------ELMYVKTLETLILDFN-------------------DLTGEIPSGLSNCTNLNWI 495
Query: 172 VLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPL 230
L+N R++ IP W +L+ L L ++ N SG+IP LG R +DL++N F G +
Sbjct: 496 SLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 231 PLWSFNVTK------------LYLRDNS-------------FSGPIPRDFGQKIPFLTDL 265
P F + +Y++++ F G I + ++
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPC 613
Query: 266 DISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP 325
+I+ G S + N ++ L +S N LSG IP+ ++ L+IL++ +N +SG IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373
+ +G L + L L +N + G +P ++ +M+ +DL +N LSG IP
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 206/485 (42%), Gaps = 103/485 (21%)
Query: 71 YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITE-THFRNLSNLKELALNKQSENIS 129
+LS++ +NG F +++ LDLS N G +T T + S LK LN S +
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK--FLNVSSNTLD 139
Query: 130 LIFNISSHWIPPFKLTFINIRSCQL----GPKFPTWLRNQ--TELTTLVLNNVRISDTIP 183
+S KL + + G W+ + EL L ++ +IS
Sbjct: 140 FPGKVSGG----LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG--- 192
Query: 184 DWFWQLDLTLDELDVAYNELSGSIP---------------NSLGFRFPATV--------- 219
D + L+ LDV+ N S IP N L F +
Sbjct: 193 DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 220 DLSSNSFEGPL-PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278
++SSN F GP+ PL ++ L L +N F+G IP LT LD+S N G+V
Sbjct: 253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 279 SICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESI----GSLLS 333
+ L +L +S+NN SGE+P + L +LD+S N SGE+PES+ SLL+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 334 VRF-----------------------LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
+ L L NN +G++PP+L NCS + SL L N LSG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSG 430
IP+ +G S+ L L+L N G IP EL + L L L N+L+G IP + N +
Sbjct: 433 TIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 490
+ N + LS+N L+GE+P + RL +L L
Sbjct: 492 L--------------------------------NWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 491 NLSRN 495
LS N
Sbjct: 520 KLSNN 524
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 13/317 (4%)
Query: 14 TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
+N S L L L FN L+G +PSSLG L LR L+LW N G IP + + L+ L L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 74 SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN 133
N + G+ P + + + LS N+ G I + R L+ LA+ K S N S N
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR----LENLAILKLSNN-SFSGN 529
Query: 134 ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT-ELTTLVLNNVRISDTIPDWFWQLDLT 192
I + L ++++ + P + Q+ ++ + R D +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 193 LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPL-PLWSFNVTKLYL--RDNSFSG 249
L + + + N L R P + +S + G P + N + ++L N SG
Sbjct: 590 AGNL-LEFQGIRSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
IP++ G +P+L L++ N ++GS+ + +L+ L L +S+N L G IP+ S ++
Sbjct: 647 YIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705
Query: 310 LYILDMSNNSLSGEIPE 326
L +D+SNN+LSG IPE
Sbjct: 706 LTEIDLSNNNLSGPIPE 722
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 126/298 (42%), Gaps = 55/298 (18%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE L L FN L G++PS L NL ++ L +N G IP IG L L L LS+N +
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
G P G ++ LDL+ N + G I F KQS I+ F +
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF------------KQSGKIAANFIAGKRY 575
Query: 139 I-------------PPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
+ L F IRS QL + T RN +T+ V T P +
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLST--RNPCNITSRVYG----GHTSPTF 628
Query: 186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN 245
+ LD++YN LSG IP +G +P L L N
Sbjct: 629 DNNGSMMF--LDMSYNMLSGYIPKEIG----------------SMPYLFI----LNLGHN 666
Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRL 303
SG IP + G + L LD+S N L+G + +++ L L + +SNNNLSG IP +
Sbjct: 667 DISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 230 LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN---GSVSKSICNLQQL 286
LP WS N +F G RD K+ T +D+S LN +VS S+ +L L
Sbjct: 30 LPDWSSNKNPC-----TFDGVTCRD--DKV---TSIDLSSKPLNVGFSAVSSSLLSLTGL 79
Query: 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHI 344
+L +SN++++G + + +SL LD+S NSLSG + S+GS ++FL + +N +
Sbjct: 80 ESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 345 S--GEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWI-GESMPSLSILRLRSNYFNGTIPPE 400
G+V LK + ++ LDL N +SG N+ W+ + L L + N +G +
Sbjct: 139 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197
Query: 401 LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460
C L LD+S NN S I P +G+ S ++ K G + +T
Sbjct: 198 RCV--NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI--------STC 246
Query: 461 YLVNLMDLSSNNLSGEMP 478
+ L+++SSN G +P
Sbjct: 247 TELKLLNISSNQFVGPIP 264
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 21/179 (11%)
Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY--FN 394
L N+HI+G V K + + SLDL N LSG + S L L + SN F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 395 GTIPPELCKLPALHILDLSHNNLSG------IIPPCVGNF-----SGMKVEPPDSVKYEG 443
G + L KL +L +LDLS N++SG ++ G SG K+ V
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 444 SLQVVLKGSEYV-----FYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
+L+ + S F + +D+S N LSG+ ++ L LN+S N
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 153/525 (29%), Positives = 255/525 (48%), Gaps = 82/525 (15%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L+ L + N+++GD+ S NL +L++ N+F IP +G+ + L+ L +S N+++
Sbjct: 177 LKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
G F + +++L++S NQ+ G I ++L L LA NK + I + +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL-SLAENKFTGEIPDFLSGACD- 291
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP-DWFWQLDLTLDELD 197
LT +++ P + + + L +L L++ S +P D ++ L LD
Sbjct: 292 ----TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLD 346
Query: 198 VAYNELSGSIPNSLGFRFPA--TVDLSSNSFEGP-LPLWSFN----VTKLYLRDNSFSGP 250
+++NE SG +P SL + T+DLSSN+F GP LP N + +LYL++N F+G
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
IP ++ N +L++L +S N LSG IP ++S L
Sbjct: 407 IP-------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
L + N L GEIP+ + + ++ LIL N ++GE+P L NC+ ++ + L +N+L+G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV----- 425
IP WIG + +L+IL+L +N F+G IP EL +L LDL+ N +G IP +
Sbjct: 502 EIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 426 ---GNF-----------SGMKVEPPDS---VKYEGSLQVVL-----------KGSEYVFY 457
NF GMK E + ++++G L Y +
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 458 TTLYLVN-----LMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
T+ N +D+S N LSG +P E+ + +L LNL N +
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 148/545 (27%), Positives = 233/545 (42%), Gaps = 91/545 (16%)
Query: 5 DFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNL 64
+F G+ + S L+ L++ N+L+GD ++ L+ L + N FVG IPP L
Sbjct: 208 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--L 265
Query: 65 TFLKELYLSSNQMNGKFPENF-GQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
L+ L L+ N+ G+ P+ G + LDLS N + G +
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF----------FGSCS 315
Query: 124 QSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIP 183
E+++L N S +P T + +R L L L+ S +P
Sbjct: 316 LLESLALSSNNFSGELP--MDTLLKMRG----------------LKVLDLSFNEFSGELP 357
Query: 184 DWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVD---LSSNSFEGPLPLWSFNVTK- 239
+ L +L LD++ N SG I +L T+ L +N F G +P N ++
Sbjct: 358 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 240 --LYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297
L+L N SG IP G + L DL + N L G + + + ++ L TL++ N+L+
Sbjct: 418 VSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357
GEIP SN ++L + +SNN L+GEIP+ IG L ++ L L NN SG +P L +C
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 358 MDSLDLGDNQLSGNIPAWI----------------------------------------- 376
+ LDL N +G IPA +
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 596
Query: 377 -GESMPSLSI---LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK 432
E + LS + S + G P ++ LD+S+N LSG IP +G+ +
Sbjct: 597 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 656
Query: 433 VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNL 492
+ GS+ + L +N++DLSSN L G +P ++ L L ++L
Sbjct: 657 ILNLGHNDISGSIPDEVG--------DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 493 SRNHL 497
S N+L
Sbjct: 709 SNNNL 713
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 181/408 (44%), Gaps = 84/408 (20%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLK---------------------------NLRYLELWHN 51
L+ L+L FN+ +G+LP SL L L+ L L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 52 SFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFR 111
F G IPP++ N + L L+LS N ++G P + G LS + L L N EG I +
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ---- 457
Query: 112 NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTL 171
EL K E + L FN L + P+ L N T L +
Sbjct: 458 ------ELMYVKTLETLILDFN-------------------DLTGEIPSGLSNCTNLNWI 492
Query: 172 VLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG-FRFPATVDLSSNSFEGPL 230
L+N R++ IP W +L+ L L ++ N SG+IP LG R +DL++N F G +
Sbjct: 493 SLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 231 PLWSFNVTK------------LYLRDNS-------------FSGPIPRDFGQKIPFLTDL 265
P F + +Y++++ F G I + ++
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPC 610
Query: 266 DISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP 325
+I+ G S + N ++ L +S N LSG IP+ ++ L+IL++ +N +SG IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373
+ +G L + L L +N + G +P ++ +M+ +DL +N LSG IP
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 141/482 (29%), Positives = 209/482 (43%), Gaps = 97/482 (20%)
Query: 71 YLSSNQMNGKFPENFGQLSAVEVLDLSENQWEG-IITETHFRNLSNLKELALNKQSENIS 129
+LS++ +NG F +++ LDLS N G + T T + S LK LN S +
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK--FLNVSSNTLD 136
Query: 130 LIFNISSHWIPPFKLTFINIRSCQL-GPKFPTWLRNQ--TELTTLVLNNVRISDTIPDWF 186
+S + L +++ + + G W+ + EL L ++ +IS D
Sbjct: 137 FPGKVSG-GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG---DVD 192
Query: 187 WQLDLTLDELDVAYNELSGSIP---------------NSLGFRFPATV---------DLS 222
+ L+ LDV+ N S IP N L F + ++S
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 223 SNSFEGPL-PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSIC 281
SN F GP+ PL ++ L L +N F+G IP LT LD+S N G+V
Sbjct: 253 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 282 NLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEIPESI----GSLLSVRF 336
+ L +L +S+NN SGE+P + L +LD+S N SGE+PES+ SLL++
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 337 -----------------------LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373
L L NN +G++PP+L NCS + SL L N LSG IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKV 433
+ +G S+ L L+L N G IP EL + L L L N+L+G IP + N + +
Sbjct: 433 SSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL-- 489
Query: 434 EPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLS 493
N + LS+N L+GE+P + RL +L L LS
Sbjct: 490 ------------------------------NWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 494 RN 495
N
Sbjct: 520 NN 521
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 13/317 (4%)
Query: 14 TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
+N S L L L FN L+G +PSSLG L LR L+LW N G IP + + L+ L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 74 SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFN 133
N + G+ P + + + LS N+ G I + R L+ LA+ K S N S N
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR----LENLAILKLSNN-SFSGN 526
Query: 134 ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT-ELTTLVLNNVRISDTIPDWFWQLDLT 192
I + L ++++ + P + Q+ ++ + R D +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 193 LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPL-PLWSFNVTKLYL--RDNSFSG 249
L + + + N L R P + +S + G P + N + ++L N SG
Sbjct: 587 AGNL-LEFQGIRSEQLNRLSTRNPCNI--TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
IP++ G +P+L L++ N ++GS+ + +L+ L L +S+N L G IP+ S ++
Sbjct: 644 YIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 702
Query: 310 LYILDMSNNSLSGEIPE 326
L +D+SNN+LSG IPE
Sbjct: 703 LTEIDLSNNNLSGPIPE 719
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 126/298 (42%), Gaps = 55/298 (18%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE L L FN L G++PS L NL ++ L +N G IP IG L L L LS+N +
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
G P G ++ LDL+ N + G I F KQS I+ F +
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF------------KQSGKIAANFIAGKRY 572
Query: 139 I-------------PPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185
+ L F IRS QL + T RN +T+ V T P +
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLST--RNPCNITSRVYG----GHTSPTF 625
Query: 186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN 245
+ LD++YN LSG IP +G +P L L N
Sbjct: 626 DNNGSMMF--LDMSYNMLSGYIPKEIG----------------SMPYLFI----LNLGHN 663
Query: 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRL 303
SG IP + G + L LD+S N L+G + +++ L L + +SNNNLSG IP +
Sbjct: 664 DISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 32/258 (12%)
Query: 230 LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN---GSVSKSICNLQQL 286
LP WS N +F G RD K+ T +D+S LN +VS S+ +L L
Sbjct: 27 LPDWSSNKNPC-----TFDGVTCRD--DKV---TSIDLSSKPLNVGFSAVSSSLLSLTGL 76
Query: 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHI 344
+L +SN++++G + + +SL LD+S NSLSG + S+GS ++FL + +N +
Sbjct: 77 ESLFLSNSHINGSVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 135
Query: 345 S--GEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWI-GESMPSLSILRLRSNYFNGTIPPE 400
G+V LK + ++ LDL N +SG N+ W+ + L L + N +G +
Sbjct: 136 DFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 194
Query: 401 LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460
C L LD+S NN S I P +G+ S ++ K G + +T
Sbjct: 195 RCV--NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI--------STC 243
Query: 461 YLVNLMDLSSNNLSGEMP 478
+ L+++SSN G +P
Sbjct: 244 TELKLLNISSNQFVGPIP 261
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 8/203 (3%)
Query: 224 NSFEGPLPLWSFNVTKL---YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280
N+ GP+P +T+L Y+ + SG IP DF +I L LD S+N+L+G++ SI
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYI-LDMSNNSLSGEIPESIGSLLSVRFLIL 339
+L L+ + N +SG IP + + S L+ + +S N L+G+IP + +L ++ F+ L
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 399
N + G+ + + L N L+ ++ +G S +L+ L LR+N GT+P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK-NLNGLDLRNNRIYGTLPQ 262
Query: 400 ELCKLPALHILDLSHNNLSGIIP 422
L +L LH L++S NNL G IP
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIP 285
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 110/277 (39%), Gaps = 65/277 (23%)
Query: 33 LPSSLGYLKNLRYLELWH-NSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAV 91
+PSSL L L +L + N+ VG IPP+I LT L LY++ ++G P+ Q+ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 92 EVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRS 151
LD S N G +
Sbjct: 128 VTLDFSYNALSGTL---------------------------------------------- 141
Query: 152 CQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL 211
P + + L + + RIS IPD + + ++ N L+G IP +
Sbjct: 142 -------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 212 GFRFPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPF---LTDL 265
A VDLS N EG + N K++L NS + D G K+ L L
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLG-KVGLSKNLNGL 249
Query: 266 DISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR 302
D+ N + G++ + + L+ L +L +S NNL GEIP+
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 110/251 (43%), Gaps = 40/251 (15%)
Query: 250 PIPRDFGQKIPFLTDLDIS-FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNIS 308
PIP +P+L L I N+L G + +I L QL L I++ N+SG IP S I
Sbjct: 67 PIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
+L LD S N+LSG +PPS+ + + + N++
Sbjct: 126 TLVTLDFSYNALSGT------------------------LPPSISSLPNLVGITFDGNRI 161
Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVG-N 427
SG IP G + + + N G IPP L L +DLS N L G G +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 428 FSGMKVE-PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486
+ K+ +S+ ++ + K +N +DL +N + G +P LT+L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKN-----------LNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 487 LGTLNLSRNHL 497
L +LN+S N+L
Sbjct: 270 LHSLNVSFNNL 280
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 97/234 (41%), Gaps = 41/234 (17%)
Query: 1 GEVSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS 60
G + DF+ + L L+ +N L+G LP S+ L NL + N G+IP S
Sbjct: 115 GAIPDFLSQIKT------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 61 IGNLTFL-KELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
G+ + L + +S N++ GK P F L+ + +DLS N EG F + N +++
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKI 226
Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179
L K SL F++ + L L L N RI
Sbjct: 227 HLAKN----SLAFDLGKVGL-------------------------SKNLNGLDLRNNRIY 257
Query: 180 DTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGF-RFPATVDLSSNSFEG-PLP 231
T+P QL L L+V++N L G IP RF + ++ G PLP
Sbjct: 258 GTLPQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 59/274 (21%)
Query: 57 IPPSIGNLTFLKELYLSS-NQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
IP S+ NL +L LY+ N + G P +L+ + L ++ G I + LS
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQ 123
Query: 116 LKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175
+K L + +N S +PP + N L + +
Sbjct: 124 IKTLV------TLDFSYNALSGTLPPSISSLPN-------------------LVGITFDG 158
Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW-- 233
RIS IPD + + ++ N L+G IP + A VDLS N EG +
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 234 -SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
N K++L NS + D G+ + +S N LNG L +
Sbjct: 219 SDKNTQKIHLAKNSLA----FDLGK-------VGLSKN-LNG--------------LDLR 252
Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPE 326
NN + G +P+ + + L+ L++S N+L GEIP+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 105/457 (22%), Positives = 195/457 (42%), Gaps = 70/457 (15%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
+ NL L+ LYL SN ++ KFP++F + ++VLD N H+ + +++ L
Sbjct: 122 VHNLENLESLYLGSNHISSIKFPKDFPARN-LKVLDFQNN-------AIHYISREDMRSL 173
Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRN----QTELTTLVLNN 175
+Q+ N+SL FN + N++ +LG T ++ T +++ N
Sbjct: 174 ---EQAINLSLNFNGN------------NVKGIELGAFDSTIFQSLNFGGTPNLSVIFNG 218
Query: 176 VRISDTIPDWFWQLDLTLDELDVAYNELSGSIP---NSLGFRFPATVDLSSNSFEGPLPL 232
++ S T W + +D+ D++ L G SL + D+SS +F+ L
Sbjct: 219 LQNSTTQSLWLGTFE-DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQL 277
Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
++T +L+ +P + + L L +S N + S N L L I
Sbjct: 278 QELDLTATHLKG------LPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 293 NNNLSGEIPRLW------SNISSLYILDMSNNSLSGEIPESI--GSLLSVRFLILCNNHI 344
G + +L + +L LD+S+N + S+ +L ++ L L +N
Sbjct: 331 -----GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL 404
G + K C ++ LDL +L N P +++ L +L L + + + L L
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 405 PALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS------EYVFYT 458
P L L+L N +F + + ++ GSL+V++ S + +
Sbjct: 446 PVLRHLNLKGN-----------HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFH 494
Query: 459 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRN 495
+L ++ +DLS N+L+ + L+ L + LNL+ N
Sbjct: 495 SLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAAN 530
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 156/363 (42%), Gaps = 46/363 (12%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNEL 203
LTF+++ CQ+ ++ +L+TLVL P F +A L
Sbjct: 56 LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN------PLIF-----------MAETSL 98
Query: 204 SGSIPNSLGFRFPATVDLSSNSFEGPLPLWSF-NVTKLYLRDNSFSG-PIPRDFGQKIPF 261
+G P SL F +S+ F +P+ + N+ LYL N S P+DF +
Sbjct: 99 NG--PKSLKHLFLIQTGISNLEF---IPVHNLENLESLYLGSNHISSIKFPKDFPAR--N 151
Query: 262 LTDLDISFNSLNGSVSKSICNLQQL--LTLVISNNNLSG-EIPRLWSNI-SSLYILDMSN 317
L LD N+++ + + +L+Q L+L + NN+ G E+ S I SL N
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPN 211
Query: 318 NSL--SGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSM-MDSLDLGDNQLSGNIPA 374
S+ +G + SL F + + IS + L C M ++SL+L +++ S +I +
Sbjct: 212 LSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGL--CEMSVESLNLQEHRFS-DISS 268
Query: 375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVE 434
+ L L L + + G +P + L L L LS N+ + NF +
Sbjct: 269 TTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLT-- 325
Query: 435 PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE--MPVELTRLIHLGTLNL 492
+ G+++ + G + L + +DLS N++ ++L L HL TLNL
Sbjct: 326 ---HLYIRGNVKKLHLGVGCL--EKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 493 SRN 495
S N
Sbjct: 381 SHN 383
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 194/478 (40%), Gaps = 84/478 (17%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSF-VGSIPPSIGNLTFLKELYLSSNQM 77
LE L++ N+L S + +LR+L+L N F V + GNLT L L LS+ +
Sbjct: 102 LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Query: 78 N--GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENI-SLIFNI 134
P LS + +LDL +G ET + N L L ++ S+ N+
Sbjct: 159 RQLDLLPVAHLHLSCI-LLDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 135 SSHWIPPFKLTFI--NIRSCQLGPKFPTWLRNQTELTTLVLNNV----RISDTIPDWFW- 187
S + + +L+ I N +CQ F + L L + L ++ + S + +FW
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 188 ---------QLDLT--LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWS-F 235
L +T +D + Y+E ++ + + V L S E +++
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSE--TALKSLMIEHVKNQVFLFSK--EALYSVFAEM 331
Query: 236 NVTKLYLRDNSF----SGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI 291
N+ L + D F P P F T L+ + N SV + L++L TL++
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSF-------TFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 292 SNNNLSG--EIPRLWSNISSLYILDMSNNSLSGEI-------PESI-----------GSL 331
N L ++ + N+SSL LD+S NSL+ ESI GS+
Sbjct: 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 332 L-----SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL 386
V+ L L NN I +P + + + L++ NQL +P + + + SL +
Sbjct: 445 FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502
Query: 387 RLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS 444
L N P C P + L N SG++ G+ + PDS K GS
Sbjct: 503 WLHDN-------PWDCTCPGIRYLSEWINKHSGVVRNSAGSVA------PDSAKCSGS 547
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295
+VT+LYL N F+ +P++ LT +D+S N ++ ++S N+ QLLTL++S N
Sbjct: 32 DVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPE 326
L PR + + SL +L + N +S +PE
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
IPRD +T+L + N V K + N + L + +SNN +S + +SN++ L
Sbjct: 29 IPRD-------VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
L +S N L P + L S+R L L N IS + + S + L +G N L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 178/421 (42%), Gaps = 64/421 (15%)
Query: 37 LGYLKNLRYLELWHN---SFVGSIPPSIGNLTFLKELYLSSNQMNGKF------------ 81
+G+LK L+ L + HN SF +P NLT L+ L LSSN++ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 82 ----------PENFGQLSAVEVLDLSE----NQWEGI-ITETHFRNLSNLKELAL----- 121
P NF Q A + + L + N ++ + + +T + L+ L+ L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 122 ----NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177
N + + S + + + I F+L +++ + F L N + + + + R
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER 296
Query: 178 ISDTIPDWFWQ-LDL--------------TLDELDVAYNELSGSIPNSLGFRFPATVDLS 222
+ D ++ WQ L+L +L L N+ G+ + + +DLS
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLS 355
Query: 223 SN--SFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVSKS 279
N SF+G F T L D SF+G I + L LD ++L S
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 280 I-CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGE-IPESIGSLLSVRFL 337
+ +L+ L+ L IS+ + +++ +SSL +L M+ NS +P+ L ++ FL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
L + P + + S + L++ NQL ++P I + + SL + L +N ++ +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 534
Query: 398 P 398
P
Sbjct: 535 P 535
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 17 SLLEKLELGFNQLNGD-LPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSN 75
S LE L++ N + LP L+NL +L+L P + +L+ L+ L ++SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 76 QMNGKFPENFGQLSAVEVLDLSENQWE 102
Q+ F +L++++ + L N W+
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 32/200 (16%)
Query: 32 DLPSSLGYLKNLRYLELWHN--SFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLS 89
DLPS L +L+L N SF G S T LK L LS N + NF L
Sbjct: 345 DLPS-------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLE 396
Query: 90 AVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL--IFN-------------- 133
+E LD + + + + F +L NL L ++ ++ IFN
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 134 ISSHWIPPF-----KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188
+++P LTF+++ CQL PT + + L L + + ++ ++PD +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
Query: 189 LDLTLDELDVAYNELSGSIP 208
+L ++ + N S P
Sbjct: 516 RLTSLQKIWLHTNPWDCSCP 535
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 259 IPFLT-DLDISFNSLN--GSVS-----------KSICNLQ-----------QLLTLVISN 293
+PF T +LD+SFN L GS S S C +Q L TL+++
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI-SGEVPPSL 352
N + +S +SSL L +L+ IG L +++ L + +N I S ++P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 353 KNCSMMDSLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
N + ++ LDL N++ + MP L++ S I P K LH L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 411 DLSHNNLS-GIIPPCVGNFSGMKVE 434
L +N S ++ C+ +G++V
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVH 230
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98
YL NL LEL N P + NLT + EL LS N + K L +++ LDL+
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 116
Query: 99 NQWEGIITETHFRNLSNLKELALN-KQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK 157
Q + T LSNL+ L L+ Q NIS + +++ L +++I + Q+
Sbjct: 117 TQITDV---TPLAGLSNLQVLYLDLNQITNISPLAGLTN-------LQYLSIGNAQVSDL 166
Query: 158 FPTWLRNQTELTTLVLNNVRISDTIP 183
P L N ++LTTL ++ +ISD P
Sbjct: 167 TP--LANLSKLTTLKADDNKISDISP 190
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98
YL NL LEL N P + NLT + EL LS N + K L +++ LDL+
Sbjct: 67 YLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTS 122
Query: 99 NQWEGIITETHFRNLSNLKELALN-KQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK 157
Q + T LSNL+ L L+ Q NIS + +++ L +++I + Q+
Sbjct: 123 TQITDV---TPLAGLSNLQVLYLDLNQITNISPLAGLTN-------LQYLSIGNNQVNDL 172
Query: 158 FPTWLRNQTELTTLVLNNVRISDTIP 183
P L N ++LTTL ++ +ISD P
Sbjct: 173 TP--LANLSKLTTLRADDNKISDISP 196
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L +L L NQL P L L YL L +N + S+P + LT LKEL L +NQ+
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 78 NGKFPEN-FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123
+ PE F +L+ ++ L L NQ + + E F +L LK L L +
Sbjct: 170 K-RVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQE 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 219 VDLSSNSFEGPLPLWSFN-VTKL---YLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 274
+DL SN LP +F+ +TKL YL DN +P +++ L L ++ N L
Sbjct: 42 LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESI-GSLLS 333
L L L + N L PR++ +++ L L + N L +P+ + L S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTS 158
Query: 334 VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 393
++ L L NN + + + + +L L +NQL +P +S+ L +L+L+ N +
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217
Query: 394 NGTI 397
+ T
Sbjct: 218 DCTC 221
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF 81
L LG+N+L L +L+ L L++N + LT LK L L +NQ+ +
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RV 196
Query: 82 PEN-FGQLSAVEVLDLSENQWE----GII 105
PE F L +++L L EN W+ GII
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWDCTCNGII 225
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 38 GYLKNLRYLE-LW-HNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL 94
G K L+ LE LW ++ + ++P + L L EL L NQ+ P F L+ + L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 95 DLSENQWEGIITETHFRNLSNLKELAL 121
L N+ + + + F L++LKEL L
Sbjct: 139 SLGYNELQS-LPKGVFDKLTSLKELRL 164
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 37/287 (12%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNE 202
LT IN + QL P L+N T+L +++NN +I+D P +LT L L + N+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 118
Query: 203 LSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG--QKIP 260
++ P ++LSSN+ L L+ SFS D +
Sbjct: 119 ITDIDPLK-NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLANLT 173
Query: 261 FLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNN 318
L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL-------- 222
Query: 319 SLSGEIPESIGSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375
SL+G + IG+L S+ L L NN IS P L + + L LG NQ+S NI
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPL 279
Query: 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
G + +L+ L L N P + L L L L NN+S I P
Sbjct: 280 AG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 219 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 308
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 37/287 (12%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNE 202
LT IN + QL P L+N T+L +++NN +I+D P +LT L L + N+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 118
Query: 203 LSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG--QKIP 260
++ P ++LSSN+ L L+ SFS D +
Sbjct: 119 ITDIDPLK-NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLANLT 173
Query: 261 FLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNN 318
L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL-------- 222
Query: 319 SLSGEIPESIGSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375
SL+G + IG+L S+ L L NN IS P L + + L LG NQ+S NI
Sbjct: 223 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISPL 279
Query: 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
G + +L+ L L N P + L L L L NN+S I P
Sbjct: 280 AG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 219 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 308
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 222 LDELSLNGNQLK-DI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 277
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 278 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 311
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 129/294 (43%), Gaps = 52/294 (17%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNE 202
LT IN + QL P L+N T+L +++NN +I+D P +LT L L + N+
Sbjct: 69 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 122
Query: 203 LSGSIP-------NSLGFRFPATVDLSSNSFEGPLPLWSF--NVTKLYLRDNSFSGPIPR 253
++ P N L D+S+ S L SF VT L P+
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK--------PLAN 174
Query: 254 DFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLY 311
+ L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 175 -----LTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL- 225
Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
SL+G + IG+L S+ L L NN IS P L + + L LG NQ+
Sbjct: 226 -------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 276
Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
S NI G + +L+ L L N P + L L L L NN+S I P
Sbjct: 277 S-NISPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 218 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 273
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 274 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 307
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 219 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 275 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 308
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 126/294 (42%), Gaps = 51/294 (17%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNE 202
LT IN + QL P L+N T+L +++NN +I+D P +LT L L + N+
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 118
Query: 203 LSGSIP-------NSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDF 255
++ P N L D+S + G L N FS D
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLN----------FSSNQVTDL 166
Query: 256 G--QKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLY 311
+ L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 167 KPLANLTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL- 222
Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
SL+G + IG+L S+ L L NN IS P L + + L LG NQ+
Sbjct: 223 -------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 273
Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
S NI G + +L+ L L N P + L L L L NN+S I P
Sbjct: 274 S-NISPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 218 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 273
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 274 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 307
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L++L L NQL D+ +L L NL L+L +N P + LT L EL L +NQ++
Sbjct: 223 LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS 114
P L+A+ L+L+ENQ E I ++ +NL+
Sbjct: 279 NISP--LAGLTALTNLELNENQLEDISPISNLKNLT 312
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 129/294 (43%), Gaps = 52/294 (17%)
Query: 144 LTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNE 202
LT IN + QL P L+N T+L +++NN +I+D P +LT L L + N+
Sbjct: 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQ 123
Query: 203 LSGSIP-------NSLGFRFPATVDLSSNSFEGPLPLWSF--NVTKLYLRDNSFSGPIPR 253
++ P N L D+S+ S L SF VT L P+
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK--------PLAN 175
Query: 254 DFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLY 311
+ L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 176 -----LTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL- 226
Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQL 368
SL+G + IG+L S+ L L NN IS P L + + L LG NQ+
Sbjct: 227 -------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 369 SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIP 422
S NI G + +L+ L L N P + L L L L NN+S I P
Sbjct: 278 S-NISPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 257 QKIPFLTDL-DISFNSLNGSVSK-SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314
Q +P T L D+S N+L+ ++ + L L +L++S+N+L+ + + +L LD
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94
Query: 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA 374
+S+N L L ++ L+L NNHI + ++ + + L L NQ+S P
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153
Query: 375 WI---GESMPSLSILRLRSNYFNGTIPPELCKLPA 406
+ G +P L +L L SN +L KLPA
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)
Query: 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
++ C+ VP SL + + + LDL N LS W + +L L L N+ N
Sbjct: 22 ILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI 79
Query: 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF 456
+P L LDLS N+L + + ++V + Y + VV + +
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV----LLLYNNHIVVVDRNA---- 131
Query: 457 YTTLYLVNLMDLSSNNLSGEMPVEL----TRLIHLGTLNLSRNHL 497
+ + + + LS N +S PVEL +L L L+LS N L
Sbjct: 132 FEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE L+L N + + L NL LEL+ N + L+ LKEL+L +N +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
F ++ ++ LDL E + I+E F LSNL+ LN N+ I N++
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR--YLNLAMCNLREIPNLT--- 204
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
P KL +++ L P + L L + +I + F L +L E+++
Sbjct: 205 -PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINL 262
Query: 199 AYNELS 204
A+N L+
Sbjct: 263 AHNNLT 268
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338
S+C+ + VI E+P S ++ +L++ N + S L + L
Sbjct: 37 SVCSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94
Query: 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398
L NHI + + +++L+L DN+L+ IP + L L LR+N
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPS 153
Query: 399 PELCKLPALHILDLSH-NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFY 457
++P+L LDL LS I G F G+ +++Y L+ E
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISE---GAFEGL-----SNLRYLNLAMCNLR--EIPNL 203
Query: 458 TTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 490
T L ++ +DLS N+LS P L+HL L
Sbjct: 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 38 GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPEN-FGQLSAVEVLDL 96
G N + L L N P +L LKELYL SNQ+ G P F L+ + VLDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 97 SENQWEGIITETHFRNLSNLKEL--ALNKQSE 126
NQ ++ F L +LKEL NK +E
Sbjct: 96 GTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE 126
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 243 RDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPR 302
R S IP + +I +L D I+ L V S+ NL++L + +N L
Sbjct: 30 RHASVPAGIPTN--AQILYLHDNQIT--KLEPGVFDSLINLKELY---LGSNQLGALPVG 82
Query: 303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD 362
++ +++ L +LD+ N L+ L+ ++ L +C N ++ E+P ++ + + L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 363 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILD---LSHNNLSG 419
L NQL +IP + + SL+ L N P C+ + L H +++
Sbjct: 142 LDQNQLK-SIPHGAFDRLSSLTHAYLFGN-------PWDCECRDIMYLRNWVADHTSIA- 192
Query: 420 IIPPCVGNFSGMKVEPPDSVKYEGS 444
+ G V PDS K G+
Sbjct: 193 ------MRWDGKAVNDPDSAKCAGT 211
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 19 LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM 77
L L+LG NQL LPS++ L +L+ L + N +P I LT L L L NQ+
Sbjct: 90 LTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Query: 78 NGKFPENFGQLSAVEVLDLSENQWE 102
F +LS++ L N W+
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGNPWD 172
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 7 IDGLSECTNSSLLEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNL 64
I L E TN L L L NQL LP+ + L NL+ L L N S+P + L
Sbjct: 78 ISALKELTN---LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKL 132
Query: 65 TFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
T L LYL NQ+ F +L+ + LDL NQ + + E F L+ LK+L+LN
Sbjct: 133 TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLN 189
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L++L L NQL L NL YL L+HN + S+P + LT L L L +NQ+
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 78 NGKFPEN-FGQLSAVEVLDLSENQWEGI 104
PE F +L+ ++ L L++NQ + +
Sbjct: 170 QS-LPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 5/102 (4%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGK 80
L LG N+L+ D+ S+L L NL YL L N S+P + LT LKEL L NQ+
Sbjct: 68 LALGGNKLH-DI-SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 81 FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
F +L+ + L L NQ + + + F L+NL L L+
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLD 165
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 59 QLNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL----------------- 94
Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
GQ +P LT LD+SFN L ++ L +L L + N L P L +
Sbjct: 95 -----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 310 LYILDMSNNSLSGEIPESI 328
L L ++NN L+ E+P +
Sbjct: 150 LEKLSLANNQLT-ELPAGL 167
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM 77
L +L L N L +LP+ + L NLR L+L HN S+P +G+ LK Y N M
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-M 304
Query: 78 NGKFPENFGQLSAVEVLDLS----ENQWEGIITE 107
P FG L ++ L + E Q+ I+TE
Sbjct: 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 276 VSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVR 335
+S +I L L ++ N+L+ E+P N+S+L +LD+S+N L+ +P +GS ++
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 336 FLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395
+ +N ++ +P N + L + N L + E + I LR N
Sbjct: 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355
Query: 396 TIPPE 400
+P E
Sbjct: 356 PLPHE 360
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 30/139 (21%)
Query: 190 DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 59 QLNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL----------------- 94
Query: 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309
GQ +P LT LD+SFN L ++ L +L L + N L P L +
Sbjct: 95 -----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 310 LYILDMSNNSLSGEIPESI 328
L L ++NN L+ E+P +
Sbjct: 150 LEKLSLANNQLT-ELPAGL 167
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 61 LNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 95
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 96 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN+L+ E+P +
Sbjct: 152 EKLSLANNNLT-ELPAGL 168
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN+L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGK 80
L LG N+L+ D+ S+L L NL YL L N S+P + LT LKEL L NQ+
Sbjct: 68 LALGGNKLH-DI-SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 81 FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
F +L+ + L+L+ NQ + + + F L+NL EL L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L++L L NQL L NL YL L HN S+P + LT L EL LS NQ+
Sbjct: 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQL 169
Query: 78 NGKFPEN-FGQLSAVEVLDLSENQWEGI 104
PE F +L+ ++ L L +NQ + +
Sbjct: 170 QS-LPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 7 IDGLSECTNSSLLEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPPSI-GNL 64
I L E TN L L L NQL LP+ + L NL+ L L N S+P + L
Sbjct: 78 ISALKELTN---LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKL 132
Query: 65 TFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
T L L L+ NQ+ F +L+ + LDLS NQ + + E F L+ LK+L L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L L L NQL L NL L+L +N S+P + LT LK+L L NQ+
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 78 NGKFPENFGQLSAVEVLDLSENQWE 102
F +L++++ + L +N W+
Sbjct: 194 KSVPDGVFDRLTSLQYIWLHDNPWD 218
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 82/201 (40%), Gaps = 31/201 (15%)
Query: 266 DISFNSLNGSVSKSICNLQQLLTL---VISNNNLSGEIPRLWSNISSLYILDMSNNSLSG 322
++ + +L G+ I L++L L +++ N L ++ +++L L + N L
Sbjct: 64 NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123
Query: 323 EIPESI-GSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
+P+ + L ++ +L L +N + + + LDL NQL ++P + + +
Sbjct: 124 -LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLT 181
Query: 382 SLSILRLRSNYFNGTIP------------------PELCKLPALHILDLSHNNLSGIIPP 423
L LRL N ++P P C P + L N SG++
Sbjct: 182 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 240
Query: 424 CVGNFSGMKVEPPDSVKYEGS 444
G+ + PDS K GS
Sbjct: 241 SAGSVA------PDSAKCSGS 255
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNDLT-ELPAGL 167
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
++ + KLY+ N+ P F Q +P LT L + N L+ N +L TL +S
Sbjct: 91 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149
Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
NNNL + +SL L +S+N L+ I SL ++S + +L
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTL 201
Query: 353 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDL 412
++ LD N +I G L+IL+L+ N N T L P L +DL
Sbjct: 202 AIPIAVEELDASHN----SINVVRGPVNVELTILKLQHN--NLTDTAWLLNYPGLVEVDL 255
Query: 413 SHNNLSGII 421
S+N L I+
Sbjct: 256 SYNELEKIM 264
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
P L ++D+S+N L + +Q+L L ISNN L + I +L +LD+S+N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306
Query: 320 L 320
L
Sbjct: 307 L 307
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN+L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN+L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 191 LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGP 250
L LD ++ ++ G++P LG T+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP-VLG-----TLDLSHNQLQS-LPL------------------ 94
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 311 YILDMSNNSLSGEIPESI 328
L ++NN+L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 140/338 (41%), Gaps = 70/338 (20%)
Query: 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98
YL NL YL L N P + NL L LY+ +N+ + D+S
Sbjct: 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK----------------ITDISA 105
Query: 99 NQWEGIITETHFRNLSNLKELALNKQS-ENISLIFNISSHWIPPFKLTFINIRSCQLGPK 157
+NL+NL+EL LN+ + +IS + N++ + S LG
Sbjct: 106 -----------LQNLTNLRELYLNEDNISDISPLANLTKXY------------SLNLGAN 142
Query: 158 FP----TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIP---- 208
+ L N T L L + ++ D P +LT L L + YN++ P
Sbjct: 143 HNLSDLSPLSNXTGLNYLTVTESKVKDVTPIA----NLTDLYSLSLNYNQIEDISPLASL 198
Query: 209 NSLGFRFPATVDLSSNSFEGPLPLWSFN-VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDI 267
SL + F A V N P+ + + L + +N + P + LT L+I
Sbjct: 199 TSLHY-FTAYV----NQITDITPVANXTRLNSLKIGNNKITDLSPL---ANLSQLTWLEI 250
Query: 268 SFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPES 327
N + S ++ +L +L L + +N +S + +N+S L L ++NN L E E
Sbjct: 251 GTNQI--SDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEV 306
Query: 328 IGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365
IG L ++ L L NHI+ P L + S DS D +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADFAN 342
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 7 IDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS----IG 62
I LS N S L LE+G NQ+ S + +K+L L+ + VGS S +
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQI-----SDINAVKDLTKLKXLN---VGSNQISDISVLN 284
Query: 63 NLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGI 104
NL+ L L+L++NQ+ + E G L+ + L LS+N I
Sbjct: 285 NLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 50 HNSFVGSIPP----SIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGII 105
H + + +P S NLT L +L SN + G F L+ +E LDLS+N ++
Sbjct: 39 HGNRISYVPAASFQSCRNLTIL---WLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 106 TETHFRNLSNLKELALNK---QSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWL 162
T FR L +L L L++ Q L +++ L ++ ++ L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAA-------LQYLYLQDNNLQALPDNTF 148
Query: 163 RNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL 211
R+ LT L L+ RI ++P+ ++ +LD L + N ++ P++
Sbjct: 149 RDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 20 EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGS--IPPSIGNLTFLKELYLSSNQM 77
++LELG L L+NLR L+L H+ S + NL+ L+ L LS N+
Sbjct: 337 KRLELG--------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 78 NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
E F + +E+LDL+ + + ++ F+NL LK L L+ + +ISS
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS------LLDISSE 442
Query: 138 W----IPPFKLTFINIRSCQLGPKFPTW-------LRNQTELTTLVLNNVRISDTIPDWF 186
+P L +N++ G FP L+ L LVL+ +S F
Sbjct: 443 QLFDGLPA--LQHLNLQ----GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 187 WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLP 231
L + ++ +D+++N L+ S +L ++L+SN LP
Sbjct: 497 TSLKM-MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP 540
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 45 YLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEG 103
YL+L NS S+P + LT L +LYL N++ F +L+++ L+LS NQ +
Sbjct: 32 YLDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 104 IITETHFRNLSNLKELALN 122
+ F L+ LKELALN
Sbjct: 91 LPNGV-FDKLTQLKELALN 108
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 263 TDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSG 322
T LD+ NSL + L L L + N L +++ ++SL L++S N L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 323 EIPESI-GSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381
+P + L ++ L L N + + + L L NQL ++P + + +
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 148
Query: 382 SLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY 441
SL + L N P C P + L N SG++ G+ + PDS K
Sbjct: 149 SLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSGVVRNSAGSVA------PDSAKC 195
Query: 442 EGSLQVV 448
GS + V
Sbjct: 196 SGSGKPV 202
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L +L LG N+L L +L YL L N S+P + LT LKEL L++NQ+
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQL 112
Query: 78 NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
F +L+ ++ L L +NQ + + + F L++L+ + L+
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 156
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 172/463 (37%), Gaps = 100/463 (21%)
Query: 20 EKLELGFNQLNGDLPSSLGY-------------------------LKNLRYLELWHNSFV 54
E+L L FN + SS + L NLR L+L +
Sbjct: 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86
Query: 55 GSIPPSIGNLTFLKELYLSSNQMNGKFPEN--FGQLSAVEVLDLSENQWEGIITETHFRN 112
P + L L EL L ++ ++ F L A+ LDLS+NQ + F
Sbjct: 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146
Query: 113 LSNLKELALNKQSENISLIFNISSHWIPPFK---LTFINIRSCQLGPKFPT-WLRNQTEL 168
L++LK + + IF + H + P + L+F ++ + L + W +
Sbjct: 147 LNSLKSIDFSSNQ-----IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 169 TTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL---------GFRFPATV 219
+VL + +S W +D+T + N +S S SL GF F
Sbjct: 202 RNMVLEILDVSGNG----WTVDITGN----FSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279
D N+F G L +V L D F SLN V ++
Sbjct: 254 DPDQNTFAG---LARSSVRHL-------------DLSHGFVF---------SLNSRVFET 288
Query: 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339
L+ L L ++ N ++ + + +L +L++S N L + L V ++ L
Sbjct: 289 ---LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345
Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-----NIPAWI--GESMPSLSILRLRSNY 392
NHI+ + K + +LDL DN L+ +IP G + +L + L +N
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 393 F--------NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427
N I L ++P L IL L+ N S C G+
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSS----CSGD 444
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 15/189 (7%)
Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
++ + KLY+ N+ P F Q +P LT L + N L+ N +L TL +S
Sbjct: 97 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155
Query: 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
NNNL + +SL L +S+N L+ I SL ++S + +L
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA--------NVSYNLLSTL 207
Query: 353 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDL 412
++ LD N +I G L+IL+L+ N N T L P L +DL
Sbjct: 208 AIPIAVEELDASHN----SINVVRGPVNVELTILKLQHN--NLTDTAWLLNYPGLVEVDL 261
Query: 413 SHNNLSGII 421
S+N L I+
Sbjct: 262 SYNELEKIM 270
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
P L ++D+S+N L + +Q+L L ISNN L + I +L +LD+S+N
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312
Query: 320 L 320
L
Sbjct: 313 L 313
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 177/417 (42%), Gaps = 57/417 (13%)
Query: 9 GLSECTNSSL----LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPS---I 61
SE T S L L +L+L +N L+ S YL +LRYL L +N+ P S +
Sbjct: 236 ATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGL 295
Query: 62 GNLTF--LKELYLSSNQMNGKFPE----NFGQLSAVEVLDLSENQWEGIITETHFRNLSN 115
NL + LK + + P +F L +E L++ +N + T F L +
Sbjct: 296 SNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNT-FTGLVS 354
Query: 116 LKELALNKQSENISLIFN---ISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLV 172
LK L+L+K ++ + N +S P L ++ +WL Q + L
Sbjct: 355 LKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWL-GQLRILDLG 413
Query: 173 LNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPL 232
LN I + W+ + E+ ++YN+ + LS++SF L
Sbjct: 414 LN--EIEQKLSGQEWRGLRNIFEIYLSYNKY---------------LQLSTSSFALVPSL 456
Query: 233 WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292
+ ++ L++ S P F + + LT LD+S N++ + L+ L L
Sbjct: 457 QRLMLRRVALKNVDIS---PSPF-RPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQ 512
Query: 293 NNNLSGEIPRLWSN------------ISSLYILDMSNNSLSGEIPESI-GSLLSVRFLIL 339
+NNL+ RLW +S L+IL++ +N L EIP + +L ++ + L
Sbjct: 513 HNNLA----RLWKRANPGGPVNFLKGLSHLHILNLESNGLD-EIPVGVFKNLFELKSINL 567
Query: 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396
N+++ P + + + SL+L N ++ G +L+ L +R N F+ T
Sbjct: 568 GLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQNLNSLDMRFNPFDCT 624
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 116/273 (42%), Gaps = 49/273 (17%)
Query: 262 LTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--------------------EIP 301
LT+LD+ NS++ S N + L+ L +S+N LS +I
Sbjct: 99 LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKIL 158
Query: 302 RLWSNI------SSLYILDMSNNSLSGEIP---ESIGSLLSVRFLILCNN-----HISGE 347
L S SSL LD+S+N L P ++IG L F +L NN H++ +
Sbjct: 159 ALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKL----FALLLNNAQLNPHLTEK 214
Query: 348 VPPSLKNCSMMDSLDLGDNQL-SGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPA 406
+ L N S+ + L L +NQL + + + G +L+ L L N + LP+
Sbjct: 215 LCWELSNTSIQN-LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPS 273
Query: 407 LHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS-----EYVFYTTLY 461
L L L +NN+ + P S ++ S+K + Q V S ++ F Y
Sbjct: 274 LRYLSLEYNNIQRLSPRSFYGLSNLRYL---SLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 462 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSR 494
L +++ NN+ T L+ L L+LS+
Sbjct: 331 L-EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSK 362
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHIS-----GEVPPSLKNCSMMD 359
S IS LD SNN L+ + E+ G L + LIL N + E+ +K+ +D
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 360 ----------------------SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397
SL++ N L+ I + P + +L L SN +I
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSNKIK-SI 436
Query: 398 PPELCKLPALHILDLSHNNLSGI 420
P ++ KL AL L+++ N L +
Sbjct: 437 PKQVVKLEALQELNVASNQLKSV 459
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 43 LRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWE 102
++ L+L H++ + SIP + L L+EL ++SNQ+ F +L++++ + L N W+
Sbjct: 423 IKVLDL-HSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 241 YLRDNSFSG--PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG 298
+L D S +G +P+D QK T L+IS N ++ + I +L +L L+IS+N +
Sbjct: 3 FLVDRSKNGLIHVPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59
Query: 299 EIPRLWSNISSLYILDMSNNSL 320
++ L LD+S+N L
Sbjct: 60 LDISVFKFNQELEYLDLSHNKL 81
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 45 YLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN--GKFPENFGQLSAVEVLDLSEN 99
+L+ +N ++ + G+LT L+ L L NQ+ K E Q+ +++ LD+S+N
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384
>pdb|3MD0|A Chain A, Crystal Structure Of ArginineORNITHINE TRANSPORT SYSTEM
ATPASE FROM Mycobacterium Tuberculosis Bound To Gdp (A
Ras-Like Gtpase Superfamily Protein)
pdb|3P32|A Chain A, Hydrolysis Of Gtp To Gdp By An Mcm-Associated And Meab-
And Mmaa-Like G-Protein From Mycobacterium Tuberculosis
pdb|4GT1|A Chain A, Crystal Structure Of A Meab- And Mmaa-Like Gtpase From
Mycobacterium Tuberculosis Bound To 2'-Deoxyguanosine
Diphosphate
Length = 355
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 118 ELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177
LA + S I LI+ + W PP LT + L + T R++ LT + R
Sbjct: 236 RLAARELSAAIRLIYPREALWRPPV-LTMSAVEGRGLAELWDTVERHRQVLTGAGEFDAR 294
Query: 178 ISDTIPDWFWQL--DLTLDEL 196
D DW WQL D LD +
Sbjct: 295 RRDQQVDWTWQLVRDAVLDRV 315
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE+LEL N+L+ P S L +LR L L H + +L L+EL LS N +
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 79 GKFPENFGQLSAVEVLDLSENQWE 102
+ F L +E + L+ N W
Sbjct: 240 SLPHDLFTPLHRLERVHLNHNPWH 263
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 18/194 (9%)
Query: 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQM 77
L+ K+E+G NG LPS L LEL+ N + L+ L+EL+L +N +
Sbjct: 70 LVRKIEVG--AFNG-LPS-------LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 78 NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH 137
F ++ ++ LDL E + I+E F L NL+ L L N+ I N+++
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC--NLKDIPNLTA- 176
Query: 138 WIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELD 197
+L + + +L P + T L L L + +++ + F L +L+EL+
Sbjct: 177 ---LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELN 232
Query: 198 VAYNELSGSIPNSL 211
+++N L S+P+ L
Sbjct: 233 LSHNNLM-SLPHDL 245
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 33 LPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVE 92
L S + +L L L N + LT L +L LS N + F L +E
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 93 VLDLSENQWEGIITETHFRNLSNLKELALN 122
VLDLS N + ++ F L NLKELAL+
Sbjct: 351 VLDLSYNHIRALGDQS-FLGLPNLKELALD 379
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 32/148 (21%)
Query: 284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
QQ LVI NN G +SSL IL + N + L ++ L L +
Sbjct: 63 QQTPGLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114
Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-C 402
+ G V LSGN + + SL +L LR N P
Sbjct: 115 LDGAV-------------------LSGNF----FKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 403 KLPALHILDLSHNNLSGIIPPCVGNFSG 430
+ H+LDL+ N + I + NF G
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQG 179
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE+LEL N+L+ P S L +LR L L H + +L L+EL LS N +
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 79 GKFPENFGQLSAVEVLDLSENQWE 102
+ F L +E + L+ N W
Sbjct: 240 SLPHDLFTPLHRLERVHLNHNPWH 263
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 8/193 (4%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE L+L N + + L +L LEL+ N + L+ L+EL+L +N +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHW 138
F ++ ++ LDL E + I+E F L NL+ L L N+ I N+++
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMC--NLKDIPNLTA-- 176
Query: 139 IPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198
+L + + +L P + T L L L + +++ + F L +L+EL++
Sbjct: 177 --LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK-SLEELNL 233
Query: 199 AYNELSGSIPNSL 211
++N L S+P+ L
Sbjct: 234 SHNNLM-SLPHDL 245
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 152/379 (40%), Gaps = 47/379 (12%)
Query: 14 TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
T S L L++GFN ++ P L L+ L L HN + T L EL+L
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105
Query: 74 SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHF-------RNLSNLKELALNKQSE 126
SN + F + + LDLS N T LSN K AL +SE
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--KSE 163
Query: 127 NISLIFN-------ISSHWIPPF---------KLTFINIRSCQLGPKFPTWL---RNQTE 167
+ + N +SS+ I F +L + + + QLGP L T
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 223
Query: 168 LTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGF---------RFPA 217
+ L L+N ++S T F L T L LD++YN L+ +S + +
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPR--DFG-QKIPFLTDLDISFNSLNG 274
L S+S G + N+ + + + + +P+ DF Q + L L++ N + G
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 275 SVSKSICNLQQLLTLVISNN-----NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG 329
S L L L +SN+ L+ E ++ S L+IL+++ N +S ++
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFS 402
Query: 330 SLLSVRFLILCNNHISGEV 348
L + L L N I E+
Sbjct: 403 WLGHLEVLDLGLNEIGQEL 421
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
+P+D P LD+ N + NL+ L TL++ NN +S P ++ + L
Sbjct: 46 VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL-S 369
L +S N L E+PE + L + L + N I+ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
I + M LS +R+ TIP L P+L L L N ++ +
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKV 207
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN 371
+LD+ NN ++ +L ++ LIL NN IS P + ++ L L NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 372 IPAWIGESMPSL-----SILRLRSNYFNGTIPPELCKLPALHILDLSHNNL--SGIIPPC 424
+P + +++ L I ++R + FNG L + +++L N L SGI
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIE--- 163
Query: 425 VGNFSGMK 432
G F GMK
Sbjct: 164 NGAFQGMK 171
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 251 IPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSL 310
+P+D P LD+ N + NL+ L TL++ NN +S P ++ + L
Sbjct: 46 VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL-S 369
L +S N L E+PE + L + L + N I+ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 370 GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
I + M LS +R+ TIP L P+L L L N ++ +
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKV 207
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 312 ILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN 371
+LD+ NN ++ +L ++ LIL NN IS P + ++ L L NQL
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E 114
Query: 372 IPAWIGESMPSL-----SILRLRSNYFNGTIPPELCKLPALHILDLSHNNL--SGIIPPC 424
+P + +++ L I ++R + FNG L + +++L N L SGI
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIE--- 163
Query: 425 VGNFSGMK 432
G F GMK
Sbjct: 164 NGAFQGMK 171
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 152/379 (40%), Gaps = 47/379 (12%)
Query: 14 TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
T S L L++GFN ++ P L L+ L L HN + T L EL+L
Sbjct: 56 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 115
Query: 74 SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHF-------RNLSNLKELALNKQSE 126
SN + F + + LDLS N T LSN K AL +SE
Sbjct: 116 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--KSE 173
Query: 127 NISLIFN-------ISSHWIPPF---------KLTFINIRSCQLGPKFPTWL---RNQTE 167
+ + N +SS+ I F +L + + + QLGP L T
Sbjct: 174 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 233
Query: 168 LTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGF---------RFPA 217
+ L L+N ++S T F L T L LD++YN L+ +S + +
Sbjct: 234 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 293
Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPR--DFG-QKIPFLTDLDISFNSLNG 274
L S+S G + N+ + + + + +P+ DF Q + L L++ N + G
Sbjct: 294 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Query: 275 SVSKSICNLQQLLTLVISNN-----NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG 329
S L L L +SN+ L+ E ++ S L+IL+++ N +S ++
Sbjct: 354 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFS 412
Query: 330 SLLSVRFLILCNNHISGEV 348
L + L L N I E+
Sbjct: 413 WLGHLEVLDLGLNEIGQEL 431
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
LE L+LG N + + L +L LEL+ N + L+ L+EL+L +N +
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
F ++ ++ LDL E + I+E F L NLK L L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 152/379 (40%), Gaps = 47/379 (12%)
Query: 14 TNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLS 73
T S L L++GFN ++ P L L+ L L HN + T L EL+L
Sbjct: 51 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 110
Query: 74 SNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHF-------RNLSNLKELALNKQSE 126
SN + F + + LDLS N T LSN K AL +SE
Sbjct: 111 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL--KSE 168
Query: 127 NISLIFN-------ISSHWIPPF---------KLTFINIRSCQLGPKFPTWL---RNQTE 167
+ + N +SS+ I F +L + + + QLGP L T
Sbjct: 169 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS 228
Query: 168 LTTLVLNNVRISDTIPDWFWQLDLT-LDELDVAYNELSGSIPNSLGF---------RFPA 217
+ L L+N ++S T F L T L LD++YN L+ +S + +
Sbjct: 229 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 288
Query: 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPR--DFG-QKIPFLTDLDISFNSLNG 274
L S+S G + N+ + + + + +P+ DF Q + L L++ N + G
Sbjct: 289 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Query: 275 SVSKSICNLQQLLTLVISNN-----NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG 329
S L L L +SN+ L+ E ++ S L+IL+++ N +S ++
Sbjct: 349 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFS 407
Query: 330 SLLSVRFLILCNNHISGEV 348
L + L L N I E+
Sbjct: 408 WLGHLEVLDLGLNEIGQEL 426
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 135/316 (42%), Gaps = 36/316 (11%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF 81
L+LG N++ +L LEL N P + NL L+ L L SN++
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 82 PENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPP 141
F LS + LD+SEN+ I+ + F++L NLK L + L++ +
Sbjct: 97 LGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN----DLVYISHRAFSGL 151
Query: 142 FKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYN 201
L + + C L L + L L L ++ I + I D+ ++ L L++++
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISH- 209
Query: 202 ELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPF 261
+P ++ N L+ N+T L + + + +P + + +
Sbjct: 210 -------------WPYLDTMTPNC------LYGLNLTSLSITHCNLTA-VPYLAVRHLVY 249
Query: 262 LTDLDISFN---SLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNN 318
L L++S+N ++ GS+ + LQ+ + + L+ P + ++ L +L++S N
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQE---IQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 319 SLSG---EIPESIGSL 331
L+ + S+G+L
Sbjct: 307 QLTTLEESVFHSVGNL 322
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 140/304 (46%), Gaps = 39/304 (12%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
LE+LEL N ++ P + L NLR L L N + IP + L+ L +L +S N++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 78 NGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK------QSENISLI 131
F L ++ L++ +N I+ F L++L++L L K +E +S +
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175
Query: 132 FNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTI-PDWFWQLD 190
H + +L +NI + + F R L L +++ DT+ P+ + L+
Sbjct: 176 -----HGLIVLRLRHLNINAIR-DYSFKRLYR----LKVLEISHWPYLDTMTPNCLYGLN 225
Query: 191 LTLDELDVAYNELSG----SIPNSLGFRFPATVDLSSN---SFEGPLPLWSFNVTKLYLR 243
LT L + + L+ ++ + + RF ++LS N + EG + + ++ L
Sbjct: 226 LT--SLSITHCNLTAVPYLAVRHLVYLRF---LNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 244 DNSFSGPIPRDFGQKIPFLTDLDISFN---SLNGSVSKSICNLQQLLTLVISNNNLSGEI 300
+ P F + + +L L++S N +L SV S+ NL+ TL++ +N L+ +
Sbjct: 281 GGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFHSVGNLE---TLILDSNPLACDC 336
Query: 301 PRLW 304
LW
Sbjct: 337 RLLW 340
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 19 LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQ 76
L+KL LG NQL LPS + L L+ L L N SIP + LT L+ L LS+NQ
Sbjct: 109 LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 77 MNGKFPENFGQLSAVEVLDLSENQWEGIITETHF 110
+ F +L ++ + L NQ++ ET +
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 304 WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 363
+ ++ L L++ N L L + L L NN ++ + + +D L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
G NQL ++P+ + + + L LRL +N KL L L LS N L +
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGK 80
L L +NQL L L L L +N S+P + +LT L +LYL NQ+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 81 FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
F +L+ ++ L L+ NQ + I F L+NL+ L+L+
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSLS 163
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 39 YLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97
+L L L L N + S+P + LT LKEL L++NQ+ F +L+ ++ L LS
Sbjct: 105 HLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 98 ENQWEGIITETHFRNLSNLKELAL 121
NQ + + F L L+ + L
Sbjct: 164 TNQLQS-VPHGAFDRLGKLQTITL 186
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 35/244 (14%)
Query: 21 KLELGFNQLNGDLPSSLGYLKNLRYLELWHN--SFVGSIPPSIGNLTFLKELYLSSNQMN 78
+LEL N+L L L L L N SF G S T LK L LS N +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90
Query: 79 GKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISL--IFN--- 133
NF L +E LD + + + + F +L NL L ++ ++ IFN
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 134 -----------ISSHWIPPF-----KLTFINIRSCQLGPKFPTWLRNQTELTTLVL--NN 175
+++P LTF+++ CQL PT + + L L + NN
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 176 VRISDTIP----DWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLP 231
DT P + LD +L+ + + + P+SL F ++L+ N F
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF-----LNLTQNDFACTCE 265
Query: 232 LWSF 235
SF
Sbjct: 266 HQSF 269
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 15 NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFV-GSIPPS--IGNLTFLKELY 71
N LL L L L+ L L++LR+L L NSF GSI + + + L+ L
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Query: 72 LSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLI 131
LSS + + F L V LDLS N G + LS+LK L LN S NI +I
Sbjct: 482 LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA----LSHLKGLYLNMASNNIRII 537
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 179/450 (39%), Gaps = 52/450 (11%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
+ NL L+ L+L SN ++ PENF ++VLD N H+ + + L
Sbjct: 124 VHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNN-------AIHYISRKDTNSL 175
Query: 120 ALNKQSENISLIFNISS-HWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRI 178
+Q+ N+SL FN + I P +S + G ++ + ++
Sbjct: 176 ---EQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFI---------IFKGLQN 223
Query: 179 SDTIPDWFWQLDLTLDEL--DVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFN 236
S W + T D+ + L S+ + DLSS++F + +
Sbjct: 224 STLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELD 283
Query: 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296
+T +L N I + + L L ++ NS + + + L L I N
Sbjct: 284 LTAAHL--NGLPSGI-----EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMR 336
Query: 297 SGEI-PRLWSNISSLYILDMSNNSLSGE--IPESIGSLLSVRFLILCNNHISGEVPPSLK 353
++ R + +L LD+S++ + + +L +++L L N G + K
Sbjct: 337 KLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK 396
Query: 354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
C ++ LD+ L P +++ L +L L + + L L DL
Sbjct: 397 ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ-----DLR 451
Query: 414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS------EYVFYTTLYLVNLMD 467
H NL G +F + + ++ GSL++++ S + + L VN +D
Sbjct: 452 HLNLQG------NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLD 505
Query: 468 LSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497
LS N+L+G+ L+ L L LN++ N++
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNI 534
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 149/333 (44%), Gaps = 32/333 (9%)
Query: 40 LKNLRYLELWHNSFVGSIPPSIGNLTF-------LKELYLSSNQMNGKFPENFGQLSAVE 92
L+N LW +F + + + TF ++ + L ++ + F + V+
Sbjct: 221 LQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQ 280
Query: 93 VLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFI--NIR 150
LDL+ G+ + +++LK+L LN S + I++ P + +I N+R
Sbjct: 281 ELDLTAAHLNGL--PSGIEGMNSLKKLVLNANS--FDQLCQINAASFPSLRDLYIKGNMR 336
Query: 151 SCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNS 210
LG + L N +L L +++ SD L L L+++YNE G
Sbjct: 337 KLDLGTRCLEKLENLQKLD-LSHSDIEASDCCNLQLKNLR-HLQYLNLSYNEPLG--LED 392
Query: 211 LGFRFPATVDLSSNSF-----EGPL-PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTD 264
F+ ++L +F + P P + ++ ++ + + + L
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH 452
Query: 265 LDISFNSL-NGSVSKSICNLQQLL----TLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
L++ NS +GS+SK+ NL Q++ L++S+ NL + + + ++ LD+S+NS
Sbjct: 453 LNLQGNSFQDGSISKT--NLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNS 510
Query: 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
L+G+ +++ L + +L + +N+I +PP L
Sbjct: 511 LTGDSMDALSHLKGL-YLNMASNNIRI-IPPHL 541
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGS--IPPSIGNLTFLKELYLSSNQ 76
+ KL+LG L L+NL+ L+L H+ S + NL L+ L LS N+
Sbjct: 335 MRKLDLG--------TRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNE 386
Query: 77 MNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS 136
G + F + +E+LD++ + F+NL L+ L L+ L+ +
Sbjct: 387 PLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH-----CLLDTSNQ 441
Query: 137 HWIPPFK-LTFINIR--SCQLGPKFPT-WLRNQTELTTLVLNNVRISDTIPDWFWQLDLT 192
H + + L +N++ S Q G T L+ L L+L++ + F L
Sbjct: 442 HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLR-N 500
Query: 193 LDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFE 227
++ LD+++N L+G ++L ++++SN+
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR 535
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGI 104
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGI 104
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGI 104
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGI 104
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGI 104
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 19 LEKLELGFNQLNGDLPSSL-GYLKNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQ 76
L+KL LG NQL LPS + L L+ L L N SIP + LT L+ L LS+NQ
Sbjct: 109 LDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 77 MNGKFPENFGQLSAVEVLDLSENQWE 102
+ F +L ++ + L NQ++
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 22 LELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGK 80
L L +NQL L L L L +N S+P + +LT L +LYL NQ+
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL 122
Query: 81 FPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALN 122
F +L+ ++ L L+ NQ + I F L+NL+ L+L+
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQSIPAGA-FDKLTNLQTLSLS 163
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 304 WSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 363
+ ++ L L++ N L L + L L NN ++ + + +D L L
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
G NQL ++P+ + + + L LRL +N KL L L LS N L +
Sbjct: 115 GGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 39 YLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97
+L L L L N + S+P + LT LKEL L++NQ+ F +L+ ++ L LS
Sbjct: 105 HLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 98 ENQWEGIITETHFRNLSNLKELAL 121
NQ + + F L L+ + L
Sbjct: 164 TNQLQS-VPHGAFDRLGKLQTITL 186
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 74/164 (45%), Gaps = 12/164 (7%)
Query: 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319
P T LD+ N ++ LQ L LV+ NN +S + +S + L L +S N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL--SGNIP-AWI 376
L EIP ++ S S+ L + +N I M+ +++G N L SG P A+
Sbjct: 114 LV-EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170
Query: 377 GESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
G L+ LR+ G IP +L + L+ L L HN + I
Sbjct: 171 GL---KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAI 208
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMN 78
L KLEL NQL G P++ +++ L+L N L LK L L NQ++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 79 GKFPENFGQLSAVEVLDLSEN 99
P +F L+++ L+L+ N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 61 IGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120
G L L +L L NQ+ G P F S ++ L L EN+ + I + F L LK
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM-FLGLHQLK--T 106
Query: 121 LNKQSENISLIFNISSHWIPPFKLTFINIRS------CQLGPKFPTWLRNQT 166
LN IS + S + LT +N+ S C L F WLR ++
Sbjct: 107 LNLYDNQISCVMPGSFEHLN--SLTSLNLASNPFNCNCHLA-WFAEWLRKKS 155
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 16 SSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWH---NSFVGSIPPSIGNLTFLKELYL 72
++ ++ L+L FN++ L NL+ L L N+ G S+G+L + L L
Sbjct: 51 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDL 107
Query: 73 SSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
S N ++ FG LS+++ L+L N ++ + + F NL+NL+ L +
Sbjct: 108 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 156
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 16 SSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWH---NSFVGSIPPSIGNLTFLKELYL 72
++ ++ L+L FN++ L NL+ L L N+ G S+G+L + L L
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDL 81
Query: 73 SSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121
S N ++ FG LS+++ L+L N ++ + + F NL+NL+ L +
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 356 SMMDSLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGTIPPELCKLPALHILD 411
+ M SLDL N+++ +IG + +L +L L+S+ N L +L LD
Sbjct: 26 AAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80
Query: 412 LSHNNLSGIIPPCVGNFSGMK 432
LS N+LS + G S +K
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLK 101
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 54 VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNL 113
+ S+P I T + LYL NQ+ P F +L+ + LDL NQ ++ F L
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 114 SNLKELALN 122
+ L +L+LN
Sbjct: 78 TQLTQLSLN 86
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 54 VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNL 113
+ S+P I T + LYL NQ+ P F +L+ + LDL NQ ++ F L
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 114 SNLKELALN 122
+ L +L+LN
Sbjct: 86 TQLTQLSLN 94
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 50/185 (27%)
Query: 278 KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSG--EIP---------- 325
K++ +L LL + +NN ++P L N S L I+D+ NNSL ++P
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 182
Query: 326 ---ESIGSLLSVRFL----------------------ILCNNHISGEVPPSLKNCSMMDS 360
E + L ++ FL I+ N+I E+ P L+N + +
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEEL-PELQNLPFLTT 241
Query: 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420
+ DN L +P PSL L +R NY PEL + +L LD+S N SG+
Sbjct: 242 I-YADNNLLKTLPDL----PPSLEALNVRDNYLTDL--PELPQ--SLTFLDVSENIFSGL 292
Query: 421 --IPP 423
+PP
Sbjct: 293 SELPP 297
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 167/424 (39%), Gaps = 80/424 (18%)
Query: 37 LGYLKNLRYLELWHN---SFVGSIPPSIGNLTFLKELYLSSNQMNGKF------------ 81
+G+LK L+ L + HN SF +P NLT L+ L LSSN++ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 82 ----------PENFGQLSAVEVLDLSE----NQWEGI-ITETHFRNLSNLKELAL----- 121
P NF Q A + + L + N ++ + + +T + L+ L+ L
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 122 ----NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177
N + + S + + + I F+L +++ + F L N + + + + R
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER 296
Query: 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSF-EGPLPLWSFN 236
+ D ++ WQ L+ ++ + + SL R T + N+F E LP F
Sbjct: 297 VKDFSYNFGWQ---HLELVNCKFGQFPTLKLKSLK-RLTFTSNKGGNAFSEVDLPSLEF- 351
Query: 237 VTKLYLRDN--SFSGPIPR-DFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293
L L N SF G + DFG L LD+SFN + ++S + L+QL L +
Sbjct: 352 ---LDLSRNGLSFKGCCSQSDFGTTS--LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH 405
Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLK 353
+NL MS S+ SL ++ +L + + H
Sbjct: 406 SNLK----------------QMSEFSV-------FLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 354 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413
S ++ L + N N I + +L+ L L P L +L +L++S
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 502
Query: 414 HNNL 417
HNN
Sbjct: 503 HNNF 506
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 259 IPFLT-DLDISFNSLN--GSVS-----------KSICNLQ-----------QLLTLVISN 293
+PF T +LD+SFN L GS S S C +Q L TL+++
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI-SGEVPPSL 352
N + +S +SSL L +L+ IG L +++ L + +N I S ++P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 353 KNCSMMDSLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
N + ++ LDL N++ + MP L++ S I P K LH L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205
Query: 411 DLSHNNLS-GIIPPCVGNFSGMKVE 434
L +N S ++ C+ +G++V
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVH 230
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 152/407 (37%), Gaps = 70/407 (17%)
Query: 61 IGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKEL 119
IG+L LKEL ++ N + K PE F L+ +E LDLS N+ + I T R L + L
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLL 202
Query: 120 ALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT--------ELTTL 171
L+ + F I P I + L F + +T E+ L
Sbjct: 203 NLSLDLSLNPMNF------IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 256
Query: 172 VLNNVRISDTIPDWFWQ-----LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSF 226
VL R + + +LT++E +AY L + +DL N
Sbjct: 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY----------LDYYLDGIIDLF-NCL 305
Query: 227 EGPLPLWSFNVTKLYLRDNSFSGP------IPRDFGQ----KIPFLTDLDISFNSLNGSV 276
+VT ++D S++ + FGQ K+ L L +F S G
Sbjct: 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL--TFTSNKGGN 363
Query: 277 SKSICNLQQLLTLVISNNNLS----------GEIPRLWSNISSLYILDMSNNSLSGEIPE 326
+ S +L L L +S N LS G I + ++S ++ MS+N L E E
Sbjct: 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423
Query: 327 SI-------------GSLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370
+ LS+R LI + + H S ++ L + N
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
Query: 371 NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417
N I + +L+ L L P L +L +L++SHNN
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 88/205 (42%), Gaps = 29/205 (14%)
Query: 259 IPFLT-DLDISFNSLN--GSVS-----------KSICNLQ-----------QLLTLVISN 293
+PF T +LD+SFN L GS S S C +Q L TL+++
Sbjct: 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109
Query: 294 NNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI-SGEVPPSL 352
N + +S +SSL L +L+ IG L +++ L + +N I S ++P
Sbjct: 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 353 KNCSMMDSLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410
N + ++ LDL N++ + MP L++ S I P K LH L
Sbjct: 170 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229
Query: 411 DLSHNNLS-GIIPPCVGNFSGMKVE 434
L +N S ++ C+ +G++V
Sbjct: 230 TLRNNFDSLNVMKTCIQGLAGLEVH 254
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 33 LPSSLGYLKNLRYLELWHNSFVGSIPPSIGN-LTFLKELYLSSNQMNGKFPENFGQLSAV 91
+P S G + ++ + I SIG + + +L +N +N PE+ Q
Sbjct: 114 MPRSAGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN---PEDLSQKEYS 170
Query: 92 EVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLT 145
++++ E + +I HF N N KEL L K I + + S +P L
Sbjct: 171 DIINTQEMYNDDLI---HFSNSENCKELQLEKHKGEILGVVVVESSILPTVILA 221
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 54 VGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNL 113
+ S+P I T + LYL N++ P F +L+ + LDL NQ ++ F L
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 114 SNLKELALN 122
+ L +L+LN
Sbjct: 78 TQLTQLSLN 86
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 32/148 (21%)
Query: 284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNH 343
QQ LVI NN G +SSL IL + N + L ++ L L +
Sbjct: 63 QQTPGLVIRNNTFRG--------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114
Query: 344 ISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-C 402
+ G V LSGN + + SL +L LR N P
Sbjct: 115 LDGAV-------------------LSGNF----FKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 403 KLPALHILDLSHNNLSGIIPPCVGNFSG 430
+ H+LDL+ N + I + NF G
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQG 179
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQM 77
L KL L NQ+ L L L L H + + S+P + LT LKEL L +NQ+
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYL-HENKLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 78 NGKFPENFGQLSAVEVLDLSENQWE 102
F +L++++ + L N W+
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTNPWD 137
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
P +S L +D+SNN +S P++ L S+ L+L N I+ E+P SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 373 PAWIGESMPSLSILRLRSN-------YFNGTIPPELCKLPALHILDLSHNNLS 418
P W G S +++LR N Y + T P L + LH D+S+NN +
Sbjct: 210 PQWFGRSWRRVAMLRYGENPHQQAALYGDPTAWPGLAQAEQLHGKDMSYNNFT 262
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL 352
P +S L +D+SNN +S P++ L S+ L+L N I+ E+P SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 40 LKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
L +L L L N P + +L L LYL +N ++ E L A++ L L++N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Query: 100 QW 101
W
Sbjct: 236 PW 237
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 40 LKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSEN 99
L +L L L N P + +L L LYL +N ++ E L A++ L L++N
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Query: 100 QW 101
W
Sbjct: 235 PW 236
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 47 ELW-HNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGI 104
LW +N+ + + P + +L L++LY +SN++ F +L+ + LDL++N +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS- 95
Query: 105 ITETHFRNLSNLKELAL 121
I F NL +L + L
Sbjct: 96 IPRGAFDNLKSLTHIYL 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,847,929
Number of Sequences: 62578
Number of extensions: 621935
Number of successful extensions: 1987
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 397
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)