Query 037822
Match_columns 497
No_of_seqs 236 out of 3899
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:27:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.7E-55 9.3E-60 461.0 40.0 465 18-497 152-716 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-55 1.1E-59 460.6 37.1 422 3-442 92-551 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5E-51 1.7E-55 419.6 39.8 464 18-497 34-559 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 1E-48 3.5E-53 407.7 43.6 474 18-497 26-596 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.1E-49 2.1E-53 404.1 41.3 460 18-497 13-535 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-49 5.9E-54 408.1 36.6 457 18-497 33-557 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-48 6.1E-53 405.9 42.5 464 18-497 50-621 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-47 4.7E-52 394.0 36.8 455 18-497 12-533 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 2.3E-46 8E-51 382.3 36.3 457 18-497 29-530 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-45 4.7E-50 391.3 35.0 463 17-496 24-537 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 2.4E-45 8.2E-50 374.8 33.5 441 15-478 50-535 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-45 4.1E-50 375.1 30.9 455 18-497 27-509 (549)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-45 4.6E-50 391.4 28.1 461 4-497 41-559 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-44 4.3E-49 364.9 24.9 448 21-497 4-480 (520)
15 4eco_A Uncharacterized protein 100.0 1.4E-43 4.9E-48 363.8 25.8 413 17-477 81-603 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 6.5E-43 2.2E-47 355.0 29.2 445 4-478 43-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-41 1.9E-45 347.1 36.9 458 18-497 53-579 (635)
18 4ecn_A Leucine-rich repeat pro 100.0 5.7E-42 1.9E-46 357.4 27.9 406 17-441 323-839 (876)
19 4eco_A Uncharacterized protein 100.0 1.7E-42 5.9E-47 355.7 22.3 356 50-442 192-600 (636)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-41 4.8E-46 345.4 26.6 452 17-497 31-509 (562)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-41 9.8E-46 340.4 26.7 422 44-497 3-456 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-41 4E-46 355.1 23.4 371 51-440 435-862 (876)
23 4g8a_A TOLL-like receptor 4; l 100.0 5.4E-38 1.8E-42 324.8 38.2 467 3-497 20-554 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 1.6E-37 5.4E-42 307.9 31.4 384 19-422 12-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-37 3.5E-42 317.0 28.2 428 38-497 28-485 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 3.1E-37 1.1E-41 305.8 29.1 366 17-398 30-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 7E-37 2.4E-41 300.6 26.1 356 18-428 12-382 (454)
28 1o6v_A Internalin A; bacterial 100.0 9.6E-35 3.3E-39 288.1 31.8 344 17-419 46-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 4.6E-36 1.6E-40 294.8 19.1 396 39-496 9-427 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 4.9E-34 1.7E-38 284.3 28.1 323 18-395 12-334 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 2.1E-34 7.1E-39 287.0 25.0 330 18-400 33-362 (477)
32 1o6v_A Internalin A; bacterial 100.0 9.3E-34 3.2E-38 281.0 29.3 329 10-395 61-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-33 5.9E-38 276.7 27.2 353 18-482 43-395 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 2.6E-33 9E-38 271.5 27.1 307 18-369 46-352 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-33 1.2E-37 274.5 24.6 357 29-497 30-386 (457)
36 4fmz_A Internalin; leucine ric 100.0 1.2E-31 4.3E-36 255.7 29.1 150 258-418 197-346 (347)
37 3oja_B Anopheles plasmodium-re 100.0 4E-32 1.4E-36 277.3 26.8 308 18-370 52-359 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 7.6E-32 2.6E-36 261.2 27.0 312 39-420 43-354 (390)
39 4fmz_A Internalin; leucine ric 100.0 2.8E-31 9.6E-36 253.2 26.5 171 257-440 174-344 (347)
40 3oja_B Anopheles plasmodium-re 100.0 6.7E-31 2.3E-35 268.2 27.3 312 39-420 49-360 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-35 1.4E-39 291.0 -4.8 362 17-420 3-413 (461)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.5E-39 287.4 -5.3 392 41-476 3-442 (461)
43 1ogq_A PGIP-2, polygalacturona 100.0 1E-30 3.4E-35 244.8 19.6 248 236-496 51-302 (313)
44 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-30 2.6E-34 241.5 23.5 127 42-179 34-160 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5E-29 1.7E-33 235.7 28.0 274 143-496 53-330 (330)
46 1xku_A Decorin; proteoglycan, 100.0 5.7E-29 2E-33 235.3 27.7 244 42-346 32-277 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-29 1.7E-33 235.9 24.4 205 260-496 123-331 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 3.1E-29 1E-33 234.7 20.3 248 143-440 51-302 (313)
49 3ogk_B Coronatine-insensitive 100.0 1.2E-30 4.2E-35 267.2 2.3 163 36-200 68-252 (592)
50 3ogk_B Coronatine-insensitive 100.0 6.9E-31 2.4E-35 269.1 -0.2 414 16-433 72-542 (592)
51 2z66_A Variable lymphocyte rec 100.0 1.8E-27 6.1E-32 222.6 21.3 247 218-475 11-262 (306)
52 3zyj_A Leucine-rich repeat-con 100.0 3.2E-27 1.1E-31 232.3 21.9 245 239-497 47-291 (440)
53 3zyi_A Leucine-rich repeat-con 100.0 3.5E-27 1.2E-31 232.8 22.0 246 238-497 57-302 (452)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-27 4.5E-32 221.0 16.8 269 217-496 14-285 (285)
55 2z80_A TOLL-like receptor 2, v 99.9 6.4E-28 2.2E-32 230.2 13.1 275 217-497 34-313 (353)
56 2p1m_B Transport inhibitor res 99.9 6.7E-30 2.3E-34 261.9 -1.0 417 20-441 46-518 (594)
57 4fcg_A Uncharacterized protein 99.9 7.4E-27 2.5E-31 219.8 19.3 222 260-495 81-311 (328)
58 2z80_A TOLL-like receptor 2, v 99.9 2E-26 6.8E-31 219.9 20.3 158 18-184 32-192 (353)
59 1ozn_A Reticulon 4 receptor; N 99.9 4.3E-26 1.5E-30 210.8 20.3 225 238-475 14-239 (285)
60 4fcg_A Uncharacterized protein 99.9 7.1E-26 2.4E-30 213.1 20.6 225 235-474 81-314 (328)
61 2z66_A Variable lymphocyte rec 99.9 7E-26 2.4E-30 211.7 20.0 145 258-402 148-295 (306)
62 3zyj_A Leucine-rich repeat-con 99.9 2.1E-25 7.1E-30 219.3 23.0 246 217-474 46-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 3.2E-25 1.1E-29 218.8 22.4 245 218-474 58-303 (452)
64 2p1m_B Transport inhibitor res 99.9 1.8E-29 6.3E-34 258.6 -8.8 417 16-438 65-540 (594)
65 1wwl_A Monocyte differentiatio 99.9 2.2E-26 7.4E-31 215.5 9.1 243 236-497 44-308 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-26 1.5E-30 214.0 8.2 261 18-342 11-272 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-23 6.4E-28 211.3 27.3 268 166-484 40-307 (622)
68 1wwl_A Monocyte differentiatio 99.9 1.3E-25 4.5E-30 210.1 7.5 226 236-475 64-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-25 1.9E-29 206.4 11.6 252 219-493 15-270 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-23 1.5E-27 208.6 25.7 258 115-443 41-298 (622)
71 2z62_A TOLL-like receptor 4, v 99.9 8.8E-24 3E-28 194.3 17.2 198 220-420 13-215 (276)
72 2o6q_A Variable lymphocyte rec 99.9 4.7E-23 1.6E-27 188.6 19.9 203 260-474 16-218 (270)
73 3oja_A Leucine-rich immune mol 99.9 2.4E-24 8.2E-29 213.6 11.5 236 234-492 33-269 (487)
74 3rfs_A Internalin B, repeat mo 99.9 6.9E-24 2.4E-28 194.3 12.7 229 236-487 20-248 (272)
75 2o6q_A Variable lymphocyte rec 99.9 9E-23 3.1E-27 186.7 19.8 200 237-441 18-217 (270)
76 3oja_A Leucine-rich immune mol 99.9 5.6E-24 1.9E-28 210.9 12.3 236 41-340 34-270 (487)
77 2z62_A TOLL-like receptor 4, v 99.9 8.8E-23 3E-27 187.6 18.8 201 215-418 29-237 (276)
78 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.9E-27 186.4 18.8 200 257-496 7-206 (290)
79 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.1E-27 189.2 13.6 201 259-497 90-306 (310)
80 1p9a_G Platelet glycoprotein I 99.9 1.6E-21 5.6E-26 179.8 19.9 201 213-419 9-209 (290)
81 3goz_A Leucine-rich repeat-con 99.9 1.2E-23 4.1E-28 201.1 1.8 259 219-478 3-301 (362)
82 2xwt_C Thyrotropin receptor; s 99.9 1.3E-21 4.5E-26 175.6 14.7 181 235-420 31-220 (239)
83 3goz_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 198.0 4.0 265 21-323 2-299 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.7E-26 174.5 15.3 199 259-496 30-237 (239)
85 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.4E-26 178.1 14.1 203 259-476 18-220 (272)
86 2ast_B S-phase kinase-associat 99.9 5.5E-23 1.9E-27 194.9 3.9 233 236-483 71-315 (336)
87 2ast_B S-phase kinase-associat 99.9 1E-22 3.5E-27 193.0 5.3 246 236-497 48-305 (336)
88 3m19_A Variable lymphocyte rec 99.9 9.1E-21 3.1E-25 171.4 17.7 165 261-429 15-179 (251)
89 2ca6_A RAN GTPase-activating p 99.9 3.8E-23 1.3E-27 199.7 1.9 236 258-497 30-315 (386)
90 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.5E-28 202.3 -2.5 131 258-388 185-337 (386)
91 3m19_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 168.2 17.7 180 236-420 15-194 (251)
92 1h6u_A Internalin H; cell adhe 99.8 5.9E-21 2E-25 177.9 13.5 194 257-475 38-231 (308)
93 4glp_A Monocyte differentiatio 99.8 3.6E-21 1.2E-25 179.8 10.1 228 18-249 65-308 (310)
94 1h6u_A Internalin H; cell adhe 99.8 9E-20 3.1E-24 169.9 14.9 192 234-443 40-231 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.3E-19 8E-24 170.4 16.9 238 218-471 13-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 2.5E-19 8.4E-24 170.3 15.8 242 236-495 10-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.6E-19 5.4E-24 158.3 13.0 162 309-486 29-190 (208)
98 2o6s_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 155.1 13.4 181 238-430 10-190 (208)
99 2xot_A Amphoterin-induced prot 99.8 2.9E-18 1E-22 163.5 14.1 128 288-419 22-150 (361)
100 3cvr_A Invasion plasmid antige 99.8 1.4E-17 4.7E-22 166.4 18.7 189 261-486 60-255 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 3.9E-22 147.4 14.8 152 263-418 14-165 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-17 3.6E-22 147.6 13.9 152 311-474 14-166 (220)
103 2v9t_B SLIT homolog 2 protein 99.7 2.6E-17 9E-22 145.1 16.1 145 287-435 14-158 (220)
104 3cvr_A Invasion plasmid antige 99.7 5.8E-18 2E-22 169.1 13.1 188 215-429 60-254 (571)
105 1h6t_A Internalin B; cell adhe 99.7 5.5E-18 1.9E-22 156.3 11.4 172 257-443 43-214 (291)
106 2xot_A Amphoterin-induced prot 99.7 8.9E-18 3.1E-22 160.1 13.1 176 217-394 21-202 (361)
107 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5E-22 153.5 13.6 171 235-421 46-216 (291)
108 4ezg_A Putative uncharacterize 99.7 7.4E-18 2.5E-22 146.1 10.7 152 305-497 41-193 (197)
109 3sb4_A Hypothetical leucine ri 99.7 3.5E-18 1.2E-22 160.9 9.0 285 18-362 26-327 (329)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-17 1.2E-21 144.2 14.7 133 261-394 33-166 (220)
111 3e6j_A Variable lymphocyte rec 99.7 6E-17 2.1E-21 143.8 16.0 141 286-431 21-161 (229)
112 4ezg_A Putative uncharacterize 99.7 1.5E-17 5.3E-22 144.1 11.8 152 258-418 42-194 (197)
113 1m9s_A Internalin B; cell inva 99.7 8.8E-18 3E-22 169.7 11.2 191 236-444 22-212 (605)
114 1m9s_A Internalin B; cell inva 99.7 6.2E-17 2.1E-21 163.5 16.6 178 235-428 43-220 (605)
115 3e6j_A Variable lymphocyte rec 99.7 1.1E-16 3.8E-21 142.1 15.9 135 284-420 40-174 (229)
116 3sb4_A Hypothetical leucine ri 99.7 5.1E-17 1.7E-21 152.9 10.1 290 165-492 24-328 (329)
117 1xeu_A Internalin C; cellular 99.7 1.7E-16 6E-21 143.9 10.0 168 236-420 20-187 (263)
118 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.9E-21 144.5 9.3 163 218-395 23-186 (263)
119 4fs7_A Uncharacterized protein 99.6 2.9E-14 1E-18 137.6 22.6 335 28-433 58-392 (394)
120 1dce_A Protein (RAB geranylger 99.6 5.4E-18 1.9E-22 170.2 -4.0 122 358-492 443-567 (567)
121 4fs7_A Uncharacterized protein 99.6 2.1E-14 7.3E-19 138.5 21.2 335 53-466 59-393 (394)
122 1w8a_A SLIT protein; signaling 99.6 3.3E-15 1.1E-19 128.6 12.5 115 311-429 11-126 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 127.6 10.3 131 285-418 25-160 (168)
124 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5.3E-21 164.8 3.2 120 301-425 217-336 (727)
125 1w8a_A SLIT protein; signaling 99.6 3E-15 1E-19 128.9 10.4 133 237-373 10-143 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 6.2E-15 2.1E-19 124.1 11.8 131 306-439 22-157 (168)
127 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6.2E-22 166.4 -4.6 120 286-411 443-566 (567)
128 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.6E-18 132.3 22.3 126 38-175 110-235 (401)
129 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.6E-20 123.8 7.9 104 18-123 18-122 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4E-19 125.1 12.0 102 335-441 13-114 (193)
131 2je0_A Acidic leucine-rich nuc 99.6 4.6E-15 1.6E-19 122.2 8.5 126 308-436 17-147 (149)
132 4fdw_A Leucine rich hypothetic 99.6 3.3E-13 1.1E-17 129.6 21.5 183 236-428 181-368 (401)
133 4b8c_D Glucose-repressible alc 99.5 1.5E-15 5.2E-20 157.3 4.6 154 252-415 216-369 (727)
134 2o6r_A Variable lymphocyte rec 99.5 6.6E-14 2.3E-18 118.9 13.0 130 334-475 9-138 (177)
135 4gt6_A Cell surface protein; l 99.5 1.8E-12 6.1E-17 125.0 24.3 134 275-416 256-389 (394)
136 2wfh_A SLIT homolog 2 protein 99.5 9.6E-14 3.3E-18 119.4 12.6 109 308-418 31-139 (193)
137 2o6r_A Variable lymphocyte rec 99.5 1.5E-13 5.2E-18 116.6 13.5 130 287-420 10-139 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 120.2 9.0 104 309-417 43-152 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 5.6E-14 1.9E-18 119.2 9.4 128 303-437 14-148 (176)
140 4gt6_A Cell surface protein; l 99.5 1.8E-11 6.1E-16 118.0 24.6 129 299-435 256-384 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 2.9E-15 1E-19 129.8 -4.8 86 279-369 43-128 (198)
142 3g39_A Variable lymphocyte rec 99.4 2.2E-12 7.4E-17 108.4 11.9 105 18-126 10-114 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.1E-20 130.1 -6.3 136 281-422 15-157 (198)
144 3g39_A Variable lymphocyte rec 99.4 2.9E-12 9.9E-17 107.6 11.4 82 335-420 12-93 (170)
145 2r9u_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 106.9 12.1 104 19-126 14-117 (174)
146 2r9u_A Variable lymphocyte rec 99.3 4.8E-12 1.6E-16 106.7 11.1 87 18-104 34-120 (174)
147 3un9_A NLR family member X1; l 99.3 3.2E-14 1.1E-18 135.3 -4.5 164 18-181 73-254 (372)
148 3un9_A NLR family member X1; l 99.3 6.6E-14 2.3E-18 133.1 -3.5 174 307-484 71-262 (372)
149 4h09_A Hypothetical leucine ri 99.3 2.6E-09 8.7E-14 102.4 25.5 146 280-431 213-358 (379)
150 4h09_A Hypothetical leucine ri 99.2 5E-09 1.7E-13 100.3 24.2 130 303-437 212-341 (379)
151 2ifg_A High affinity nerve gro 99.1 2.4E-10 8.1E-15 108.2 10.5 105 20-128 11-117 (347)
152 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.9E-15 107.9 10.5 93 3-103 24-117 (347)
153 2ra8_A Uncharacterized protein 99.0 1.1E-10 3.7E-15 109.9 1.3 12 258-269 137-148 (362)
154 2ra8_A Uncharacterized protein 98.9 1.2E-09 3.9E-14 102.9 6.6 64 355-418 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 5.4E-09 1.9E-13 88.8 -0.1 66 114-179 93-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 1.1E-08 3.8E-13 86.8 0.8 63 142-204 93-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 2.7E-08 9.2E-13 82.1 1.7 82 19-100 63-150 (176)
158 3e4g_A ATP synthase subunit S, 98.4 8.3E-08 2.9E-12 79.1 1.5 84 333-416 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.4 6.7E-08 2.3E-12 86.1 0.8 83 38-122 167-259 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.4E-06 4.8E-11 77.6 4.5 79 16-96 169-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.1E-05 3.7E-10 67.9 1.1 117 61-177 37-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 7.9E-06 2.7E-10 68.7 0.3 115 39-153 39-168 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0021 7.1E-08 50.3 6.7 38 460-497 30-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0039 1.3E-07 48.7 6.5 56 45-102 12-68 (130)
165 2lz0_A Uncharacterized protein 78.2 5.4 0.00018 28.9 5.9 49 26-75 5-53 (100)
166 2lz0_A Uncharacterized protein 72.3 5.1 0.00018 29.0 4.5 42 56-98 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-55 Score=461.05 Aligned_cols=465 Identities=31% Similarity=0.440 Sum_probs=350.3
Q ss_pred CccEEEcCCCCCcccCCcc---ccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822 18 LLEKLELGFNQLNGDLPSS---LGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL 94 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 94 (497)
+|++|++++|.+++..+.. +..+++|++|++++|.+.+..| +..+++|++|++++|.+++..|. +.++++|++|
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 228 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEE
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEE
Confidence 7777777777776555544 4555555555555555543332 24455555555555555543333 5555555555
Q ss_pred EcCCCccccccChhhhhcCCCCceEeccCccccc------------------eeeecccCCCCCC-ccccEEEccCCcCC
Q 037822 95 DLSENQWEGIITETHFRNLSNLKELALNKQSENI------------------SLIFNISSHWIPP-FKLTFINIRSCQLG 155 (497)
Q Consensus 95 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------~~~~~~~~~~~~~-~~L~~l~l~~~~~~ 155 (497)
++++|.+++.++. .+.++++|++|++++|.+.. .....++..+... ++|++|++++|++.
T Consensus 229 ~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 229 DISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp ECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred ECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 5555555443333 44455555555554443210 2233555555554 77888888888777
Q ss_pred CCCCccccCCCCccEEEeeccccccccCch-hhhcccCccEEEcccccccccCCccc-ccc-CCCEEEccCCccccCCCC
Q 037822 156 PKFPTWLRNQTELTTLVLNNVRISDTIPDW-FWQLDLTLDELDVAYNELSGSIPNSL-GFR-FPATVDLSSNSFEGPLPL 232 (497)
Q Consensus 156 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~l~~l~l~~~~~~~~~~~ 232 (497)
...|..++.+++|++|++++|.+.+..|.. +..+ ++|++|++++|.+.+..|..+ .++ .++.+++++|.+.+..+.
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 777777888888888888888877666665 4444 578888888888776666655 344 788888888887765554
Q ss_pred C-----ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccC
Q 037822 233 W-----SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNI 307 (497)
Q Consensus 233 ~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 307 (497)
. .++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 3 3468888888888887777666 478889999999999888888888889999999999999888888888889
Q ss_pred CCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR 387 (497)
Q Consensus 308 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 387 (497)
++|++|++++|++++..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|+
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~ 544 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLD 544 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEE
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEE
Confidence 99999999999998888888999999999999999998888889999999999999999998888887776 89999999
Q ss_pred ccCcccccCCCcc-------------------------------------------------------------------
Q 037822 388 LRSNYFNGTIPPE------------------------------------------------------------------- 400 (497)
Q Consensus 388 l~~n~~~~~~~~~------------------------------------------------------------------- 400 (497)
+++|++++.+|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 9999888666543
Q ss_pred ---cCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC
Q 037822 401 ---LCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM 477 (497)
Q Consensus 401 ---l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 477 (497)
+..+++|+.|++++|++++.+|.++++++.|+.|++++|.+.. ..+..++.+++|++|||++|.+++.+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--------~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG--------SIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS--------CCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC--------CCChHHhCCCCCCEEECCCCcccCcC
Confidence 3345778999999999999999999999999999999999854 44556788999999999999999999
Q ss_pred ChhhhccCCCCeEECCCCCC
Q 037822 478 PVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 478 ~~~l~~l~~L~~l~l~~n~i 497 (497)
|..+..+++|++|++++|++
T Consensus 697 p~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEE
T ss_pred ChHHhCCCCCCEEECcCCcc
Confidence 99999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-55 Score=460.58 Aligned_cols=422 Identities=30% Similarity=0.392 Sum_probs=260.9
Q ss_pred CCccccCCCCCCCCCCccEEEcCCCCCcccCCc--cccCCCCCCEEECCCCcccccCCccc-cCCCCCCEEECcCCcCcc
Q 037822 3 VSDFIDGLSECTNSSLLEKLELGFNQLNGDLPS--SLGYLKNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNG 79 (497)
Q Consensus 3 ~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~~~~ 79 (497)
+|+.+++++ +|++|++++|.+++.+|. .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.+++
T Consensus 92 l~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 165 (768)
T 3rgz_A 92 SVSGFKCSA------SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165 (768)
T ss_dssp CCCCCCCCT------TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEE
T ss_pred CchhhccCC------CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCC
Confidence 346666666 999999999999887777 89999999999999998887777665 788899999999998887
Q ss_pred cCCcc---CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC
Q 037822 80 KFPEN---FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP 156 (497)
Q Consensus 80 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 156 (497)
..+.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+. ..++. +..+++|++|++++|.+..
T Consensus 166 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~----~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS----TGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp ETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC----SCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred cCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC----CCCcc-cccCCCCCEEECcCCcCCC
Confidence 66655 6777788888888777765432 366777777777775332 22222 6666677777777776666
Q ss_pred CCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCcccc--ccCCCEEEccCCccccCCCCC-
Q 037822 157 KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG--FRFPATVDLSSNSFEGPLPLW- 233 (497)
Q Consensus 157 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~l~l~~~~~~~~~~~~- 233 (497)
..|..++.+++|+.|++++|.+.+..|.. . .++|++|++++|.+.+.+|..+. ++.++.+++++|.+.+..|..
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~-l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--P-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--C-CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--c-cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 66666666666666666666665444432 1 13455555555554444443331 244444444444444433332
Q ss_pred --ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecc-------------------------cccccC--cC
Q 037822 234 --SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV-------------------------SKSICN--LQ 284 (497)
Q Consensus 234 --~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-------------------------~~~l~~--l~ 284 (497)
+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.. +..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 1244444444444443444332233444444444444333333 333322 34
Q ss_pred CccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecC
Q 037822 285 QLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 364 (497)
Q Consensus 285 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 364 (497)
+|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 45555555555555555556666666666666666665566666666666666666666665566666666666666666
Q ss_pred CCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccc
Q 037822 365 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYE 442 (497)
Q Consensus 365 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 442 (497)
+|.+.+.+|..+.. +++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|..+.++++|+.|++++|++.
T Consensus 475 ~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 475 FNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp SSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 66666556655544 666666666666666666666666666666666666666666666666666666666666654
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-51 Score=419.59 Aligned_cols=464 Identities=21% Similarity=0.186 Sum_probs=375.8
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...|..|.++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 79999999999998889999999999999999999998889999999999999999999998889999999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc--EEEeec
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT--TLVLNN 175 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~--~L~l~~ 175 (497)
+|.+++..+. .+.++++|++|++++|.+. ......+..+++|++|++++|.+....+..++.+++|+ .|++++
T Consensus 114 ~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 114 QTGISSIDFI-PLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp TSCCSCGGGS-CCTTCTTCCEEECCSSCCC----CCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred ccCcccCCcc-hhccCCcccEEECCCCccc----ccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 9999874333 6899999999999996543 21223344588999999999999887788899999999 899999
Q ss_pred cccccccCchhhhc--------------------------------------------------ccCccEEEcccccccc
Q 037822 176 VRISDTIPDWFWQL--------------------------------------------------DLTLDELDVAYNELSG 205 (497)
Q Consensus 176 ~~~~~~~~~~~~~~--------------------------------------------------~~~L~~L~l~~~~~~~ 205 (497)
|.+.+..+..+... ..+++++++++|.+.+
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 99887665544321 0156677777777776
Q ss_pred cCCccc-cccCCCEEEccCCccccCCCC--CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecc-ccccc
Q 037822 206 SIPNSL-GFRFPATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV-SKSIC 281 (497)
Q Consensus 206 ~~~~~~-~~~~l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~l~ 281 (497)
..+..+ .++.++.+++++|.+....+. ..++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.. +..+.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhhh
Confidence 555544 467888888888888744332 24588888888888874444343 57888889999888876443 34578
Q ss_pred CcCCccEEEeecceeeccc--CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCc-ccccCCCC
Q 037822 282 NLQQLLTLVISNNNLSGEI--PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMM 358 (497)
Q Consensus 282 ~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L 358 (497)
.+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8888999999988887544 66788888999999999988877788888889999999999988765543 47888999
Q ss_pred CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC---CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT---IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP 435 (497)
Q Consensus 359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 435 (497)
++|++++|.+.+..+..+.. +++|+.|++++|++++. .+..+..+++|++|++++|++++..|..+.++++|+.|+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTT-CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCcCHHHHhC-CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 99999999888555555544 88999999999988752 235678889999999999999888888899999999999
Q ss_pred CCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 436 PDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
+++|++... .+..+..++.| .|++++|.+++.+|..+..+++|++|++++|++
T Consensus 507 Ls~N~l~~~--------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 507 LSHNRLTSS--------SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCSSCCCGG--------GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CCCCccCcC--------ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 999987543 34456778888 999999999988888899999999999999984
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-48 Score=407.71 Aligned_cols=474 Identities=20% Similarity=0.201 Sum_probs=271.5
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 67778888887776666677777888888888777776677777777788888887777775544567777788888887
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCcccc--CCCCccEEEeec
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLR--NQTELTTLVLNN 175 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~--~l~~L~~L~l~~ 175 (497)
+|.+++..+ ..+.++++|++|++++|.+. ...+..+..+++|++|++++|.+....+..+. .+++|+.|++++
T Consensus 106 ~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 106 SNSIQKIKN-NPFVKQKNLITLDLSHNGLS----STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp SSCCCCCCS-CTTTTCTTCCEEECCSSCCS----CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCccCccCh-hHccccCCCCEEECCCCccc----ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 777765333 36777777777777775432 23444556667777777777776655554443 346677777777
Q ss_pred cccccccCchhhhcc--------------------------cCccEEEcccccccccCCcccc-c--cCCCEEEccCCcc
Q 037822 176 VRISDTIPDWFWQLD--------------------------LTLDELDVAYNELSGSIPNSLG-F--RFPATVDLSSNSF 226 (497)
Q Consensus 176 ~~~~~~~~~~~~~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~-~--~~l~~l~l~~~~~ 226 (497)
|.+.+..+..+.... ++++.|++++|.+.+..+..+. + +.++.+++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 766655554433221 2455555555555544444332 2 2366666666655
Q ss_pred ccCCCCC---ccccceEecccCcccccCChhh--------------------------------hcCCCCccEEEcccCc
Q 037822 227 EGPLPLW---SFNVTKLYLRDNSFSGPIPRDF--------------------------------GQKIPFLTDLDISFNS 271 (497)
Q Consensus 227 ~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~--------------------------------~~~~~~L~~L~l~~~~ 271 (497)
.+..+.. .++|+.|++++|.+.+..+..+ +..+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 5444332 3355566666655543333222 2234555555555555
Q ss_pred ceecccccccCcCCccEEEeecceeec--ccCccccc--CCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee
Q 037822 272 LNGSVSKSICNLQQLLTLVISNNNLSG--EIPRLWSN--ISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE 347 (497)
Q Consensus 272 i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~ 347 (497)
+.+..+..+..+++|++|++++|.+.. .....+.. .++|+.|++++|++.+..+.++..+++|++|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 555555555555555555555543210 01111111 12444444455555544455555666666666666666544
Q ss_pred CC-cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc--cCCCcccCCCCCCCEEEccCCcCcCCCCcc
Q 037822 348 VP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN--GTIPPELCKLPALHILDLSHNNLSGIIPPC 424 (497)
Q Consensus 348 ~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 424 (497)
.+ ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..+..
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhh-hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 33 455556666666666666553222222 23555555555555544 234555666666666666666666555556
Q ss_pred ccCCCCCcccCCCCCcccccceeeee------------------------CccccccccccccCEEEccCCcccccCChh
Q 037822 425 VGNFSGMKVEPPDSVKYEGSLQVVLK------------------------GSEYVFYTTLYLVNLMDLSSNNLSGEMPVE 480 (497)
Q Consensus 425 l~~l~~L~~L~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 480 (497)
+.++++|+.|++++|++......... ......+..+++|+.|++++|.+++..+..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 66666666666666665432211111 111223455666666666666666555555
Q ss_pred hhccCCCCeEECCCCCC
Q 037822 481 LTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 481 l~~l~~L~~l~l~~n~i 497 (497)
|..+++|++|++++|+|
T Consensus 580 ~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp TTTCTTCCEEECTTSCC
T ss_pred hCCCCCCCEEECCCCcC
Confidence 56666666666666653
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-49 Score=404.05 Aligned_cols=460 Identities=19% Similarity=0.170 Sum_probs=319.8
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
.-+.++.++..++ .+|..+. .++++|++++|.+++..|.+|.++++|++|++++|.++...|.+|.++++|++|+++
T Consensus 13 ~~~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 13 VNKTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 4567999999888 5666665 489999999999998889999999999999999999998889999999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+.+..+. .+.++++|++|++++|.+. ...+..+..+++|++|++++|++.......+..+++|+.|++++|.
T Consensus 90 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 90 ANPLIFMAET-ALSGPKALKHLFFIQTGIS----SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp TCCCSEECTT-TTSSCTTCCEEECTTSCCS----CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC
T ss_pred CCcccccChh-hhcccccccEeeccccCcc----cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc
Confidence 9999875555 8999999999999997543 2224567888999999999999987554455569999999999999
Q ss_pred cccccCchhhhcccCcc--EEEcccccccccCCccccccCCCE-------------------------------------
Q 037822 178 ISDTIPDWFWQLDLTLD--ELDVAYNELSGSIPNSLGFRFPAT------------------------------------- 218 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~l~~------------------------------------- 218 (497)
+.+..+..+..+ ++++ .+++++|.+.+..+..+....++.
T Consensus 165 l~~~~~~~~~~l-~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 165 IHYLSKEDMSSL-QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp CCEECHHHHHTT-TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred ccccChhhhhhh-cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 987777777766 5888 899999999887776665544444
Q ss_pred ---------------EEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccc
Q 037822 219 ---------------VDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280 (497)
Q Consensus 219 ---------------l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 280 (497)
+++++|.+.+..+.. +++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+..+..+
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCG
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhh
Confidence 444444444443322 235666666666655 444443 345666666666666655555556
Q ss_pred cCcCCccEEEeecceeecccC-cccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcccccCCC
Q 037822 281 CNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPSLKNCSM 357 (497)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 357 (497)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 666666666666665543333 23556666666666666665443 445566666666666666666555666666666
Q ss_pred CCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC---CCccccCCCCCccc
Q 037822 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI---IPPCVGNFSGMKVE 434 (497)
Q Consensus 358 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L 434 (497)
|+.|++++|.+.+..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|+.|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 666666666665444443333466666666666666655555666666666666666666542 22446666666666
Q ss_pred CCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 435 PPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 435 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
++++|.+.. ..+..+..+++|+.|++++|.+++..|..+..++.| +|++++|+|
T Consensus 482 ~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 482 VLSFCDLSS--------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp ECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred ECCCCccCc--------cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence 666666532 223345666777777777777776677777777777 777777764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-49 Score=408.14 Aligned_cols=457 Identities=19% Similarity=0.164 Sum_probs=373.5
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|.+++..+.+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.++...|..|.++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 79999999999988888889999999999999999987788889999999999999999987778889999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc----EEEe
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT----TLVL 173 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~----~L~l 173 (497)
+|.+++..+. .+.++++|++|++++|.+. ...++..+..+++|++|++++|++....+..++.+++|+ .+++
T Consensus 113 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~---~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 113 ETKLASLESF-PIGQLITLKKLNVAHNFIH---SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp TSCCCCSSSS-CCTTCTTCCEEECCSSCCC---CCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred CCcccccccc-ccCCCCCCCEEeCCCCccc---ceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9998764434 6888999999999886432 124677788888999999999988877676666655544 7888
Q ss_pred eccccccccCchhhhcccCccEEEccccccc-------------------------------------------------
Q 037822 174 NNVRISDTIPDWFWQLDLTLDELDVAYNELS------------------------------------------------- 204 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------------------------- 204 (497)
++|.+.+..+..+.. . +|+++++++|.+.
T Consensus 189 ~~n~l~~~~~~~~~~-~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQG-I-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp TTCCCCEECTTTTTT-C-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred cCCCcceeCcccccC-c-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 888877554444432 2 6777777776543
Q ss_pred ---------ccCCccccccCCCEEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee
Q 037822 205 ---------GSIPNSLGFRFPATVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 274 (497)
Q Consensus 205 ---------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 274 (497)
+..+....++.++.++++++.+..... ...++|+.+++++|.+ +.+| .+ .++.|++|++++|...+
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~--~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL--DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC--CCSSCCEEEEESCSSCE
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC--CCCccceeeccCCcCcc
Confidence 222333346788888888888765441 1244899999999998 4777 33 78999999999996543
Q ss_pred cccccccCcCCccEEEeecceeecc--cCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cc
Q 037822 275 SVSKSICNLQQLLTLVISNNNLSGE--IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PS 351 (497)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~ 351 (497)
.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 33 567899999999999998854 37788899999999999999984 55788999999999999999987666 67
Q ss_pred cccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc-CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCC
Q 037822 352 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSG 430 (497)
Q Consensus 352 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 430 (497)
+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++ ..|..+..+++|++|++++|++++..|..+.++++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 889999999999999999767766554 9999999999999987 36888999999999999999999888999999999
Q ss_pred CcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccC-CCCeEECCCCCC
Q 037822 431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLI-HLGTLNLSRNHL 497 (497)
Q Consensus 431 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~l~l~~n~i 497 (497)
|+.|++++|++... .+..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++
T Consensus 499 L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 499 LQLLNMSHNNLLFL--------DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSSCCSCE--------EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred CCEEECCCCcCCCc--------CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 99999999998543 3455788999999999999998 5666688987 699999999985
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-48 Score=405.87 Aligned_cols=464 Identities=21% Similarity=0.218 Sum_probs=317.1
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+|++|++++|.+++..|..|+.+++|++|++++|.+....+.+|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 129 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECC
Confidence 88899999888888888888888889999998888885555578888888888888888886666778888888888888
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCC--CCCCccccEEEccCCcCCCCCCccc-------------
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSH--WIPPFKLTFINIRSCQLGPKFPTWL------------- 162 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~l------------- 162 (497)
+|.+++..+. .+.++++|++|++++|.+.. ..+.. ...+++|++|++++|++....+..+
T Consensus 130 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 130 HNGLSSTKLG-TQVQLENLQELLLSNNKIQA----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp SSCCSCCCCC-SSSCCTTCCEEECCSSCCCC----BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTT
T ss_pred CCcccccCch-hhcccccCCEEEccCCcccc----cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccc
Confidence 8888765444 67788888888888764331 11111 1233456666666665554444433
Q ss_pred --------------------------------------cCCC--CccEEEeeccccccccCchhhhcccCccEEEccccc
Q 037822 163 --------------------------------------RNQT--ELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNE 202 (497)
Q Consensus 163 --------------------------------------~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 202 (497)
..++ +|+.|++++|.+.+..+..+..+ ++|++|++++|.
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~ 283 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNN 283 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCC
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCc
Confidence 3332 25555555554444444434333 345555555555
Q ss_pred ccccCCccc-cccCCCEEEccCCccccC------------CCCCccccceEecccCcccccCChhhhcCCCCccEEE---
Q 037822 203 LSGSIPNSL-GFRFPATVDLSSNSFEGP------------LPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLD--- 266 (497)
Q Consensus 203 ~~~~~~~~~-~~~~l~~l~l~~~~~~~~------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~--- 266 (497)
+.+..+..+ .++.++.++++++...+. ....+++|+.+++++|.+.+..+. .+..+++|++|+
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSN 362 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTT
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCC
Confidence 444333222 233333333333221110 001234666666666666643332 223445555555
Q ss_pred -------------------------cccCcceecccccccCcCCccEEEeecceeecccC-cccccCCCCCEEECccCcc
Q 037822 267 -------------------------ISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYILDMSNNSL 320 (497)
Q Consensus 267 -------------------------l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~i 320 (497)
+++|.+.+..+.++..+++|++|++++|.+.+..+ ..+..+++|++|++++|++
T Consensus 363 n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp CBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred CchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 45555555556667777777777777777764444 5667777777777777777
Q ss_pred cccCCcccccccCCcEEEeecceee--eeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC-
Q 037822 321 SGEIPESIGSLLSVRFLILCNNHIS--GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI- 397 (497)
Q Consensus 321 ~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~- 397 (497)
.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.+. .++...+.++++|+.|++++|++++..
T Consensus 443 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccch
Confidence 7666667777777888888777765 346777888999999999999988 555554555899999999999887531
Q ss_pred -------CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccC
Q 037822 398 -------PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS 470 (497)
Q Consensus 398 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 470 (497)
+..+..+++|++|++++|++....+..|.++++|+.|++++|++.. ..+..+..+++|+.|++++
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--------l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT--------LPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECTT
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc--------CCHhHhCCCCCCCEEECCC
Confidence 1237888999999999999996666679999999999999998853 3344567899999999999
Q ss_pred CcccccCChhhh-ccCCCCeEECCCCCC
Q 037822 471 NNLSGEMPVELT-RLIHLGTLNLSRNHL 497 (497)
Q Consensus 471 n~~~~~~~~~l~-~l~~L~~l~l~~n~i 497 (497)
|.+++..+..+. .+++|+++++++||+
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCc
Confidence 999988888787 799999999999985
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-47 Score=393.96 Aligned_cols=455 Identities=19% Similarity=0.115 Sum_probs=378.6
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
.-++++.+++.++ .+|..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4578999999998 5565554 899999999999998888899999999999999999998888899999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeecc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNV 176 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 176 (497)
+|.+++..+. .|.++++|++|++++|.+. ...+..+..+++|++|++++|.+.. .+|..++.+++|++|++++|
T Consensus 89 ~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 89 GNPIQSFSPG-SFSGLTSLENLVAVETKLA----SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TCCCCCCCTT-SSTTCTTCCEEECTTSCCC----CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCcccccChh-hcCCcccCCEEEccCCccc----cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 9999885555 8999999999999996432 2233568889999999999999976 56899999999999999999
Q ss_pred ccccccCchhhhcc---cCccEEEcccccccccCCccccccCCCEEEccCCcccc-------------------------
Q 037822 177 RISDTIPDWFWQLD---LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEG------------------------- 228 (497)
Q Consensus 177 ~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------------- 228 (497)
.+.+..+..+..+. ..+.++++++|.+.+..+..+....++.+++++|.+.+
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 99887777666542 12458999999999887777777788999998886531
Q ss_pred ---------------------------------CCC--CCccccceEecccCcccccCChhhhcCCCCccEEEcccCcce
Q 037822 229 ---------------------------------PLP--LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN 273 (497)
Q Consensus 229 ---------------------------------~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 273 (497)
..+ ...++++.++++++.+. .++ ....+++|++|++++|.+.
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc
Confidence 011 12347778888888775 455 2356788888888888884
Q ss_pred ecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcc
Q 037822 274 GSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPS 351 (497)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~ 351 (497)
..| .+ .+++|++|++++|...... .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+. ..+..
T Consensus 321 -~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~ 394 (606)
T 3vq2_A 321 -QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN 394 (606)
T ss_dssp -SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC
T ss_pred -ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh
Confidence 555 44 7888999999888544333 5678899999999999988653 677888999999999999988 45678
Q ss_pred cccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC-CCCccccCCCC
Q 037822 352 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG-IIPPCVGNFSG 430 (497)
Q Consensus 352 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~ 430 (497)
+..+++|+.|++++|.+.+..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+ ..|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 89999999999999999866663444559999999999999998888889999999999999999987 47889999999
Q ss_pred CcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 431 MKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 431 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
|+.|++++|++.. ..+..+..+++|++|++++|.+++.+|..|..+++|++|+|++|+|
T Consensus 475 L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 475 LTFLDLSKCQLEQ--------ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCc--------cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 9999999998853 3344568899999999999999988899999999999999999986
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=382.26 Aligned_cols=457 Identities=18% Similarity=0.178 Sum_probs=363.9
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|.+++..+.+|..+++|++|++++|.+.+..+.+|.++++|++|++++|.++...+.+|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 78999999999988888889999999999999999887778889999999999999999987777889999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc----cEEEe
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL----TTLVL 173 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L----~~L~l 173 (497)
+|.+++. +...+.++++|++|++++|.+. ...++..+..+++|++|++++|++....+..++.+++| +.+++
T Consensus 109 ~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~---~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 109 ETNLASL-ENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp TSCCCCS-TTCSCTTCTTCCEEECCSSCCC---CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccC-CCccccccccccEEecCCCccc---eecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9998764 3335888999999999886432 12356778888899999999998887777778877777 78999
Q ss_pred eccccccccCchhhhcccCccEEEcccccccccC-Cc------------------------------cc-ccc--CCCEE
Q 037822 174 NNVRISDTIPDWFWQLDLTLDELDVAYNELSGSI-PN------------------------------SL-GFR--FPATV 219 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~------------------------------~~-~~~--~l~~l 219 (497)
++|.+.+..+..+... +|+++++++|...... +. .+ .+. .++.+
T Consensus 185 ~~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TTCCCCEECTTTTTTC--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CCCCceecCHHHhccC--cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 9998887777666543 6888888877322100 00 00 011 12344
Q ss_pred EccCC-ccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822 220 DLSSN-SFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295 (497)
Q Consensus 220 ~l~~~-~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~ 295 (497)
++.++ .+.+..+.. +++++.+++++|.+. .+|..+. .+ .|++|++++|.+. ..|. ..+++|++|++++|.
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~-~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSY-NF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCS-CC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhc-cC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 44444 344444433 458899999999887 5666553 45 8999999999987 3333 467899999999998
Q ss_pred eecccCcccccCCCCCEEECccCcccccC--CcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCC
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEI--PESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 373 (497)
+....+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTT
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccc
Confidence 7754443 67899999999999988554 5678889999999999999985444 48899999999999999986656
Q ss_pred hhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc-CCCCccccCCCCCcccCCCCCcccccceeeeeCc
Q 037822 374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS-GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS 452 (497)
Q Consensus 374 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 452 (497)
...+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++.. .
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~--------~ 485 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--------L 485 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE--------E
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc--------C
Confidence 445556999999999999999888888999999999999999997 5688899999999999999998743 3
Q ss_pred cccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 453 EYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 453 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
.+..+..+++|++|++++|.+++.++..|..+++|++|++++|++
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 344567899999999999999988888899999999999999985
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=391.27 Aligned_cols=463 Identities=21% Similarity=0.175 Sum_probs=295.3
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVG-SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD 95 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 95 (497)
+++++|++++|.+++..+.+|..+++|++|++++|.... +.|.+|.++++|++|++++|.++...|.+|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 489999999999998889999999999999999995443 4488899999999999999999988899999999999999
Q ss_pred cCCCccccccCh-hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCC--CCccEEE
Q 037822 96 LSENQWEGIITE-THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQ--TELTTLV 172 (497)
Q Consensus 96 l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l--~~L~~L~ 172 (497)
+++|.+.+..+. ..+.++++|+.|++++|.+. ....+..+..+++|++|++++|.+....+..+..+ ++|+.|+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~---~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR---SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC---CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCccc---ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 999999874443 35899999999999997543 11223567889999999999999988888888877 8999999
Q ss_pred eeccccccccCchhhhcc-----cCccEEEcccccccccCCcccc----ccCCCEEEccCCccccC---------C----
Q 037822 173 LNNVRISDTIPDWFWQLD-----LTLDELDVAYNELSGSIPNSLG----FRFPATVDLSSNSFEGP---------L---- 230 (497)
Q Consensus 173 l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~---------~---- 230 (497)
+++|.+.+..+..+.... ..|+.|++++|.+.+..+..+. ...+..+.+..+..... .
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 999998877666544331 1489999999987765554332 23445555542221110 0
Q ss_pred -CCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCC
Q 037822 231 -PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISS 309 (497)
Q Consensus 231 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 309 (497)
....++++.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 001235666777776666333332 345666777777777766666666666677777777777666555666666677
Q ss_pred CCEEECccCcccccCCcccccccCCcEEEeecceeeee------------------CCcccccCCCCCEEecCCCcCccc
Q 037822 310 LYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE------------------VPPSLKNCSMMDSLDLGDNQLSGN 371 (497)
Q Consensus 310 L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~~~L~~L~l~~~~i~~~ 371 (497)
|+.|++++|.+....+..+..+++|++|++++|.+++. +|.. ..+++.|++++|.+.+.
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL 416 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccC
Confidence 77777777766655555666666677776666665421 1110 12333333444433321
Q ss_pred CChhHhhhCCCCCEEEccCcccccCCCc-ccCCCCCCCEEEccCCcCc-----CCCCccccCCCCCcccCCCCCcccccc
Q 037822 372 IPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLPALHILDLSHNNLS-----GIIPPCVGNFSGMKVEPPDSVKYEGSL 445 (497)
Q Consensus 372 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~ 445 (497)
-.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+. +..+..+.++++|+.|++++|.+...
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 495 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL- 495 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC-
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc-
Confidence 1111122355666666666665532211 2334455555555555554 22233455555555555555554322
Q ss_pred eeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822 446 QVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH 496 (497)
Q Consensus 446 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 496 (497)
.+..+..+++|++|+|++|.+++..+..+. ++|+.|++++|+
T Consensus 496 -------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 496 -------PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537 (844)
T ss_dssp -------CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred -------ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence 222234455555555555555544433333 444444444443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=374.78 Aligned_cols=441 Identities=20% Similarity=0.188 Sum_probs=342.0
Q ss_pred CCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEE
Q 037822 15 NSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVL 94 (497)
Q Consensus 15 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 94 (497)
.+++|++|++++|++++..+.+|+.+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..++++++|++|
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 34499999999999998888899999999999999999998888999999999999999999996666679999999999
Q ss_pred EcCCCccccc-cChhhhhcCCCCceEeccCccccceeeecccCCCCCCccc----cEEEccCCcCCCCCCccccCCCCcc
Q 037822 95 DLSENQWEGI-ITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKL----TFINIRSCQLGPKFPTWLRNQTELT 169 (497)
Q Consensus 95 ~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L----~~l~l~~~~~~~~~~~~l~~l~~L~ 169 (497)
++++|.+++. +|. .+.++++|+.|++++|.+. ...+..+..+.+| +++++++|.+....+..+... +|+
T Consensus 130 ~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~ 203 (570)
T 2z63_A 130 NVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203 (570)
T ss_dssp ECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred ecCCCccceecChh-hhcccCCCCEEeCcCCccc----eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence 9999999863 455 7999999999999997543 2334556666677 899999999987777777665 899
Q ss_pred EEEeeccccccc-cC------------------------------chhhhcc-cCccEEEcccc-cccccCCccc-cccC
Q 037822 170 TLVLNNVRISDT-IP------------------------------DWFWQLD-LTLDELDVAYN-ELSGSIPNSL-GFRF 215 (497)
Q Consensus 170 ~L~l~~~~~~~~-~~------------------------------~~~~~~~-~~L~~L~l~~~-~~~~~~~~~~-~~~~ 215 (497)
.|++++|..... .+ ..+.... ..++.+++.++ .+.+..+..+ .++.
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 999988742210 00 0111110 13455556555 4444555544 4678
Q ss_pred CCEEEccCCccccCCCC--CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeec
Q 037822 216 PATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISN 293 (497)
Q Consensus 216 l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 293 (497)
++.++++++.+...... .. +|+.+++++|.+. .+|. ..+++|++|++++|.+....+. ..+++|++|++++
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~ 356 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSR 356 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCS
T ss_pred ccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcC
Confidence 89999988887753322 12 8888999998887 5555 3678899999999887654443 6788899999998
Q ss_pred ceeeccc--CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cccccCCCCCEEecCCCcCcc
Q 037822 294 NNLSGEI--PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSG 370 (497)
Q Consensus 294 n~~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~ 370 (497)
|.+.... +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 8877433 56677888999999999988754444 8888899999999998876544 467888999999999998886
Q ss_pred cCChhHhhhCCCCCEEEccCcccc-cCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeee
Q 037822 371 NIPAWIGESMPSLSILRLRSNYFN-GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVL 449 (497)
Q Consensus 371 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 449 (497)
..+..+. .+++|+.|++++|.++ +.+|..+..+++|++|++++|++++..|..+.++++|+.|++++|++...
T Consensus 436 ~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 509 (570)
T 2z63_A 436 AFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV----- 509 (570)
T ss_dssp CCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred cchhhhh-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC-----
Confidence 5555444 4889999999999887 46778888899999999999999888888889999999999999887433
Q ss_pred eCccccccccccccCEEEccCCcccccCC
Q 037822 450 KGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478 (497)
Q Consensus 450 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 478 (497)
.+..+..+++|+.|++++|.++...|
T Consensus 510 ---~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 510 ---PDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ---CHHHhhcccCCcEEEecCCcccCCCc
Confidence 33456778899999999999886655
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-45 Score=375.08 Aligned_cols=455 Identities=19% Similarity=0.206 Sum_probs=361.1
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+|++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 89999999999998888899999999999999999998888899999999999999999997776779999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecc-cCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNI-SSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV 176 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 176 (497)
+|.+++......+.++++|++|++++|. ....+ +..+..+++|++|++++|.+....|..++.+++|+.|++++|
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVE----TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESS----SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCcccccchhhhhhccCCccEEECCCCc----cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 9998763222368899999999998863 12233 356788899999999999998888899999999999999998
Q ss_pred ccccccCchhhhcccCccEEEcccccccccC----CccccccCCCEEEccCCccccCCC-------CCccccceEecccC
Q 037822 177 RISDTIPDWFWQLDLTLDELDVAYNELSGSI----PNSLGFRFPATVDLSSNSFEGPLP-------LWSFNVTKLYLRDN 245 (497)
Q Consensus 177 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~-------~~~~~L~~L~l~~~ 245 (497)
.+. ..+..+....++|++|++++|.+.+.. +.....+.++.+++.++.+.+..+ ....+++.+++++|
T Consensus 183 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 183 ESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp BST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 875 445555444568999999999988642 112236688999999988765332 22457888999998
Q ss_pred cccccCC-----hhhhcCCCCccEEEcccCcceec-----ccccccCcCCccEEEeecceeecccCccc-ccCCCCCEEE
Q 037822 246 SFSGPIP-----RDFGQKIPFLTDLDISFNSLNGS-----VSKSICNLQQLLTLVISNNNLSGEIPRLW-SNISSLYILD 314 (497)
Q Consensus 246 ~~~~~~~-----~~~~~~~~~L~~L~l~~~~i~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~ 314 (497)
.+.+... ......+++++.+++.++.+... .+..+...++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence 7764211 11224678899999988876532 1122334578999999999987 666655 5799999999
Q ss_pred CccCcccccCC---cccccccCCcEEEeecceeeeeCC--cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822 315 MSNNSLSGEIP---ESIGSLLSVRFLILCNNHISGEVP--PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389 (497)
Q Consensus 315 l~~n~i~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 389 (497)
+++|.+.+..+ ..++.+++|++|++++|.+++..+ ..+..+++|++|++++|++. .+|..+.. +++|+.|+++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-~~~L~~L~Ls 418 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW-PEKMRFLNLS 418 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-CTTCCEEECT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc-cccccEEECC
Confidence 99999986553 346788999999999999874322 45788999999999999998 77776554 8899999999
Q ss_pred CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822 390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS 469 (497)
Q Consensus 390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 469 (497)
+|+++ .++..+ .++|++|++++|++++.. ..+++|+.|++++|++.. ++. ...+++|++|+++
T Consensus 419 ~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~---------~~~l~~L~~L~Ls 481 (549)
T 2z81_A 419 STGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD---------ASLFPVLLVMKIS 481 (549)
T ss_dssp TSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC---------GGGCTTCCEEECC
T ss_pred CCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC---------cccCccCCEEecC
Confidence 99987 444433 368999999999998642 578899999999998862 222 2458899999999
Q ss_pred CCcccccCChhhhccCCCCeEECCCCCC
Q 037822 470 SNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 470 ~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
+|.+++.+|+.|..+++|++|++++|++
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 9999988888899999999999999985
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=391.39 Aligned_cols=461 Identities=21% Similarity=0.195 Sum_probs=332.4
Q ss_pred CccccCCCCCCCCCCccEEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 037822 4 SDFIDGLSECTNSSLLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFP 82 (497)
Q Consensus 4 ~~~l~~l~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 82 (497)
|..+.+++ +|++|++++|... ...|.+|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+
T Consensus 41 ~~~~~~l~------~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 114 (844)
T 3j0a_A 41 ASSFPFLE------QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114 (844)
T ss_dssp SSSCSSCC------SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCS
T ss_pred hhHCcccc------cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccc
Confidence 45555565 9999999999544 4448899999999999999999998889999999999999999999987556
Q ss_pred cc--CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCC--ccccEEEccCCcCCCCC
Q 037822 83 EN--FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPP--FKLTFINIRSCQLGPKF 158 (497)
Q Consensus 83 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~ 158 (497)
.. +.++++|++|++++|.+++..+...+.++++|++|++++|.+. ...+..+..+ ++|+.|++++|.+....
T Consensus 115 ~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~----~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF----LVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp TTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC----CCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC----eeCHHHcccccCCccceEECCCCcccccc
Confidence 54 8999999999999999987655557999999999999997543 2234444444 68999999999988877
Q ss_pred CccccCCCC------ccEEEeeccccccccCchhhhcc-------------------------------------cCccE
Q 037822 159 PTWLRNQTE------LTTLVLNNVRISDTIPDWFWQLD-------------------------------------LTLDE 195 (497)
Q Consensus 159 ~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~~-------------------------------------~~L~~ 195 (497)
+..++.+++ |+.|++++|.+.+..+..+.... ++++.
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~ 270 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence 777776665 99999999987766655544321 34555
Q ss_pred EEcccccccccCCccc-cccCCCEEEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCc
Q 037822 196 LDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNS 271 (497)
Q Consensus 196 L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 271 (497)
|++++|.+.+..+..+ .++.++.+++++|.+.+..+.. .++|+.|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~ 349 (844)
T 3j0a_A 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF-YGLPKVAYIDLQKNH 349 (844)
T ss_dssp EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-SSCTTCCEEECCSCC
T ss_pred EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-cCCCCCCEEECCCCC
Confidence 5555555554444433 3455555555555555444332 2355555555555553323222 345555666666555
Q ss_pred ceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC-Cc
Q 037822 272 LNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV-PP 350 (497)
Q Consensus 272 i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~ 350 (497)
+....+..+..+++|++|++++|.+.. + ..+++|+.|++++|++. ..+.. ..+++.|++++|.+.+.. +.
T Consensus 350 i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 350 IAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHH
T ss_pred CCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhh
Confidence 554444555555556666665555541 1 12455566666666555 22221 356788888888886432 12
Q ss_pred ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc-----CCCcccCCCCCCCEEEccCCcCcCCCCccc
Q 037822 351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG-----TIPPELCKLPALHILDLSHNNLSGIIPPCV 425 (497)
Q Consensus 351 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l 425 (497)
.+..+++|+.|++++|.+.+..+......+++|+.|++++|.++. ..+..|..+++|++|++++|.+++..|..+
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc
Confidence 345899999999999999854444344448999999999999873 334568889999999999999999999999
Q ss_pred cCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 426 GNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 426 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
..+++|+.|++++|++....+.. +. ++|+.|++++|.+++..|..| ++|+.+++++|++
T Consensus 501 ~~l~~L~~L~Ls~N~l~~l~~~~--------~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 501 SHLTALRGLSLNSNRLTVLSHND--------LP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKF 559 (844)
T ss_dssp SSCCSCSEEEEESCCCSSCCCCC--------CC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECC
T ss_pred cchhhhheeECCCCCCCccChhh--------hh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCc
Confidence 99999999999999986543332 22 789999999999998888764 5899999999984
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=364.93 Aligned_cols=448 Identities=19% Similarity=0.129 Sum_probs=224.4
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCc
Q 037822 21 KLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQ 100 (497)
Q Consensus 21 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 100 (497)
+|++++|.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|++++..|.+|.++++|++|++++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 3455555544 2333333 455555555555444333445555555555555555544444445555555555555555
Q ss_pred cccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc--cEEEeecccc
Q 037822 101 WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL--TTLVLNNVRI 178 (497)
Q Consensus 101 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 178 (497)
+++ ++.. .+++|++|++++|.+. ...++..+..+++|++|++++|++.. ..+..+++| +.|++++|.+
T Consensus 81 l~~-lp~~---~l~~L~~L~L~~N~l~---~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVK-ISCH---PTVNLKHLDLSFNAFD---ALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCE-EECC---CCCCCSEEECCSSCCS---SCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eee-cCcc---ccCCccEEeccCCccc---cccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 443 2221 4455555555543221 01223344444455555555554432 233444444 5555555554
Q ss_pred --ccccCchhhhcccCccEEEcccccccccCCccc--cccCCCEEEccCCc-------cccCCC--CCccccceEecccC
Q 037822 179 --SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL--GFRFPATVDLSSNS-------FEGPLP--LWSFNVTKLYLRDN 245 (497)
Q Consensus 179 --~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~~~-------~~~~~~--~~~~~L~~L~l~~~ 245 (497)
.+..|..+..+..+...+++++|.+.+..+... .++.++.+++++|. +.+..+ ...++++.++++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc
Confidence 334444443322222233444444433222211 23344444444443 211111 11235555555555
Q ss_pred cccccCChhhhc--CCCCccEEEcccCcceecccccc-----cCcCCccEEEeecceeecccC-cccccC---CCCCEEE
Q 037822 246 SFSGPIPRDFGQ--KIPFLTDLDISFNSLNGSVSKSI-----CNLQQLLTLVISNNNLSGEIP-RLWSNI---SSLYILD 314 (497)
Q Consensus 246 ~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~~~---~~L~~L~ 314 (497)
.+.+.....+.. ..+.|++|++++|.+.+..|..+ ..+++|+.+++++|.+ ..| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 444322211110 13466666666666665555555 5566666666666665 233 222222 4566666
Q ss_pred CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcc--cCChhHhhhCCCCCEEEccCcc
Q 037822 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG--NIPAWIGESMPSLSILRLRSNY 392 (497)
Q Consensus 315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~L~l~~n~ 392 (497)
+++|.+.... ....+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+. .+++|+.|++++|.
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNS 385 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCCc
Confidence 6666654221 12455666666666666665556666666666666666666653 2223233 36666666666666
Q ss_pred cccCCCc-ccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCC
Q 037822 393 FNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN 471 (497)
Q Consensus 393 ~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 471 (497)
+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|++.. .+..+..+++|++|++++|
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~---------ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS---------IPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC---------CCGGGGGCTTCCEEECCSS
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc---------cchhhhcCCCCCEEECCCC
Confidence 6643443 355666666666666666655554443 566666666666531 1222335677777777777
Q ss_pred cccccCChhhhccCCCCeEECCCCCC
Q 037822 472 NLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 472 ~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
.+++..+..|..+++|++|++++|++
T Consensus 455 ~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHHHhccCCcccEEECcCCCC
Confidence 77743333377777777777777764
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-43 Score=363.79 Aligned_cols=413 Identities=19% Similarity=0.249 Sum_probs=288.1
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCccc------c---------------------------cCCcccc-
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFV------G---------------------------SIPPSIG- 62 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~------~---------------------------~~~~~l~- 62 (497)
.+++.|+++++.+.+.+|.+++.+++|++|++++|.+. + ..|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 48999999999999999999999999999999999651 0 0000010
Q ss_pred ------------------CCCCCCEEECc--CCcCcccCCccCCCCCCCCEEEcCCCccccc-----------------c
Q 037822 63 ------------------NLTFLKELYLS--SNQMNGKFPENFGQLSAVEVLDLSENQWEGI-----------------I 105 (497)
Q Consensus 63 ------------------~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~ 105 (497)
....++.+.+. +|.+++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11122222232 567776 788899999999999999998873 4
Q ss_pred Chhhhh--cCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc-ccc-c
Q 037822 106 TETHFR--NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR-ISD-T 181 (497)
Q Consensus 106 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~ 181 (497)
|. .+. ++++|++|++++ |.+...+|..++++++|+.|++++|. +++ .
T Consensus 240 p~-~l~~~~l~~L~~L~L~~----------------------------n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 240 TE-DLKWDNLKDLTDVEVYN----------------------------CPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp TS-CCCGGGCTTCCEEEEEC----------------------------CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred ch-hhhhcccCCCCEEEecC----------------------------CcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence 44 455 677666666655 44444555566666666666666665 555 4
Q ss_pred cCchhhhc-----ccCccEEEcccccccccCCc---cccccCCCEEEccCCccccCCCC--CccccceEecccCcccccC
Q 037822 182 IPDWFWQL-----DLTLDELDVAYNELSGSIPN---SLGFRFPATVDLSSNSFEGPLPL--WSFNVTKLYLRDNSFSGPI 251 (497)
Q Consensus 182 ~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~---~~~~~~l~~l~l~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 251 (497)
.|..+..+ .++|++|++++|.++ .+|. ...++.|+.+++++|.+.+..|. ..++|+.|++++|.+. .+
T Consensus 291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~l 368 (636)
T 4eco_A 291 LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EI 368 (636)
T ss_dssp HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-EC
T ss_pred chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cc
Confidence 55555443 135666666666666 4443 23455566666666666544441 1237777788888777 66
Q ss_pred ChhhhcCCCC-ccEEEcccCcceecccccccCcC--CccEEEeecceeecccCcccc-------cCCCCCEEECccCccc
Q 037822 252 PRDFGQKIPF-LTDLDISFNSLNGSVSKSICNLQ--QLLTLVISNNNLSGEIPRLWS-------NISSLYILDMSNNSLS 321 (497)
Q Consensus 252 ~~~~~~~~~~-L~~L~l~~~~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~i~ 321 (497)
|..+ ..++. |++|++++|.+. ..|..+..++ +|++|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 369 p~~l-~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 369 PANF-CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CTTS-EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred cHhh-hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 6665 45777 888888888887 5666666544 788888888888877777776 6778888888888888
Q ss_pred ccCCcccccccCCcEEEeecceeeeeCCcc-cccC-------CCCCEEecCCCcCcccCChhHh-hhCCCCCEEEccCcc
Q 037822 322 GEIPESIGSLLSVRFLILCNNHISGEVPPS-LKNC-------SMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY 392 (497)
Q Consensus 322 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~-------~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~n~ 392 (497)
...+..+..+++|++|++++|.++ .+|.. +... ++|+.|++++|.+. .+|..++ ..+++|+.|++++|+
T Consensus 447 ~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 447 KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 444445566888888888888887 44443 3322 28888888888888 7777665 348888888888888
Q ss_pred cccCCCcccCCCCCCCEEEc------cCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEE
Q 037822 393 FNGTIPPELCKLPALHILDL------SHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLM 466 (497)
Q Consensus 393 ~~~~~~~~l~~l~~L~~L~l------~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 466 (497)
+++ +|..+..+++|++|++ ++|++.+.+|..+.++++|+.|++++|++ ..++.. + .++|+.|
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~--------~--~~~L~~L 592 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK--------I--TPNISVL 592 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC--------C--CTTCCEE
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh--------H--hCcCCEE
Confidence 885 7778888888888888 45677778888888888888888888887 333321 1 2678888
Q ss_pred EccCCcccccC
Q 037822 467 DLSSNNLSGEM 477 (497)
Q Consensus 467 ~l~~n~~~~~~ 477 (497)
++++|++....
T Consensus 593 ~Ls~N~l~~~~ 603 (636)
T 4eco_A 593 DIKDNPNISID 603 (636)
T ss_dssp ECCSCTTCEEE
T ss_pred ECcCCCCcccc
Confidence 88888776443
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.5e-43 Score=355.01 Aligned_cols=445 Identities=18% Similarity=0.130 Sum_probs=355.7
Q ss_pred CccccCCCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcc-cCC
Q 037822 4 SDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG-KFP 82 (497)
Q Consensus 4 ~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~ 82 (497)
|..+.+++ +|++|++++|++++..+.+|+.+++|++|++++|.+.+..|..|.++++|++|++++|.++. ..+
T Consensus 43 ~~~~~~l~------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 43 HGDLRACA------NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp SSTTSSCT------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred hhhhhcCC------cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence 34455555 99999999999998888999999999999999999997777779999999999999999986 346
Q ss_pred ccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccc
Q 037822 83 ENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWL 162 (497)
Q Consensus 83 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l 162 (497)
..+.++++|++|++++|.+.+.++...+.++++|++|++++|.+ ....+..+..+++|++|+++++.+.......+
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 192 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL----RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC----CEECTTTTTTCSEEEEEEEECSBSTTHHHHHH
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc----cccChhhhhccccCceEecccCcccccchhhH
Confidence 78999999999999999844446655899999999999998643 34567888899999999999998754333334
Q ss_pred cCCCCccEEEeecccccccc--CchhhhcccCccEEEcccccccccCCccc-----cccCCCEEEccCCccccCC-----
Q 037822 163 RNQTELTTLVLNNVRISDTI--PDWFWQLDLTLDELDVAYNELSGSIPNSL-----GFRFPATVDLSSNSFEGPL----- 230 (497)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~----- 230 (497)
..+++|+.|++++|.+.+.. +..+....++++.+++++|.+.+..+..+ .++.++.+++++|.+.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 67899999999999987642 33333444689999999998876544332 3568999999999877642
Q ss_pred ----CCCccccceEecccCcccccCC----hhhhcCCCCccEEEcccCcceecccccc-cCcCCccEEEeecceeecccC
Q 037822 231 ----PLWSFNVTKLYLRDNSFSGPIP----RDFGQKIPFLTDLDISFNSLNGSVSKSI-CNLQQLLTLVISNNNLSGEIP 301 (497)
Q Consensus 231 ----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~ 301 (497)
.....+++.+++.++.+..... .......+.|++|++++|.+. ..|..+ ..+++|++|++++|.+.+..+
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccc
Confidence 2345688999998887652210 111234678999999999987 445444 579999999999999886553
Q ss_pred ---cccccCCCCCEEECccCcccccCC--cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822 302 ---RLWSNISSLYILDMSNNSLSGEIP--ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 376 (497)
Q Consensus 302 ---~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 376 (497)
..++.+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++..+
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~ 429 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI 429 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh
Confidence 346788999999999999985432 45888999999999999998 67888889999999999999987 666543
Q ss_pred hhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccc
Q 037822 377 GESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF 456 (497)
Q Consensus 377 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 456 (497)
+++|+.|++++|++++. +..+++|++|++++|+++ .+|. ...+++|+.|++++|++.. ..+..
T Consensus 430 ---~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~--------~~~~~ 492 (549)
T 2z81_A 430 ---PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS--------VPDGI 492 (549)
T ss_dssp ---CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC--------CCTTG
T ss_pred ---cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC--------cCHHH
Confidence 46899999999999853 357899999999999998 5665 5689999999999998853 34445
Q ss_pred cccccccCEEEccCCcccccCC
Q 037822 457 YTTLYLVNLMDLSSNNLSGEMP 478 (497)
Q Consensus 457 ~~~~~~L~~L~l~~n~~~~~~~ 478 (497)
+..+++|+.|++++|.++...|
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHH
T ss_pred HhcCcccCEEEecCCCccCCCc
Confidence 6789999999999999976554
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.6e-41 Score=347.14 Aligned_cols=458 Identities=22% Similarity=0.232 Sum_probs=349.0
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|+|++..+.+|..+++|++|++++|.++++.+.+|.++++|++|++++|+++...+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 78999999999998888889999999999999999987778889999999999999999987767788999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc----cEEEe
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL----TTLVL 173 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L----~~L~l 173 (497)
+|++++ ++...|+++++|++|++++|.+. ....+..+..+++|++|++++|++....+..++.+.++ ..+++
T Consensus 133 ~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 133 ETNLAS-LENFPIGHLKTLKELNVAHNLIQ---SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp TSCCCC-STTCCCTTCTTCCEEECCSSCCC---CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCcCCC-CChhhhhcCcccCeeccccCccc---cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999987 44447899999999999986532 22355667778899999999998887777666554433 35667
Q ss_pred eccccccccCchhhhcccCccEEEccccccc-------------------------------------------------
Q 037822 174 NNVRISDTIPDWFWQLDLTLDELDVAYNELS------------------------------------------------- 204 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------------------------------------------------- 204 (497)
+.|.+....+..+... .++.+++.++...
T Consensus 209 s~n~l~~i~~~~~~~~--~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp TTCCCCEECTTTTTTC--EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred ccCcccccCcccccch--hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 7766654333322211 2333333332110
Q ss_pred ----------ccCCccccccCCCEEEccCCccccCCCC-CccccceEecccCcccccCChhhhcCCCCccEEEcccCcce
Q 037822 205 ----------GSIPNSLGFRFPATVDLSSNSFEGPLPL-WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLN 273 (497)
Q Consensus 205 ----------~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 273 (497)
+..........+..+.+..+.+....+. ....++.+++.++.+.+ ++. ..++.++.+++..+.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~---~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT---LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS-CCC---CBCTTCCEEEEESCCSC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC-cCc---ccchhhhhcccccccCC
Confidence 0000111233556666666665544332 23488999999998763 322 25788999999998875
Q ss_pred ecccccccCcCCccEEEeecceee--cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC-Cc
Q 037822 274 GSVSKSICNLQQLLTLVISNNNLS--GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV-PP 350 (497)
Q Consensus 274 ~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~ 350 (497)
. +.....+++|+.+++++|.+. +..+..+..+.+|+.+++..+.+. ..+..+..+++|+.+++.++...... ..
T Consensus 363 ~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 363 N--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp C--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred C--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccc
Confidence 3 234557899999999998875 234555667889999999999887 45556788999999999988876443 34
Q ss_pred ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc-cCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822 351 SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN-GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS 429 (497)
Q Consensus 351 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 429 (497)
.+..+++++.++++.|.+.+..+ ..+..+++++.|++++|.+. ...|..|..+++|++|++++|++.+..|..|.+++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccccccccccccccccccccc-cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 67789999999999999984444 44455899999999999754 34677899999999999999999988899999999
Q ss_pred CCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhcc-CCCCeEECCCCCC
Q 037822 430 GMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL-IHLGTLNLSRNHL 497 (497)
Q Consensus 430 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~n~i 497 (497)
+|+.|++++|++.. ..+..+..+++|++||+++|.+++..|..|..+ ++|++|+|++||+
T Consensus 519 ~L~~L~Ls~N~l~~--------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 519 SLQVLNMSHNNFFS--------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCCEEECTTSCCCB--------CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCEEECCCCcCCC--------CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 99999999998844 334456789999999999999999999999988 6899999999985
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-42 Score=357.44 Aligned_cols=406 Identities=16% Similarity=0.199 Sum_probs=235.3
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEEC-CCCcccccCCccc----------------------------------
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLEL-WHNSFVGSIPPSI---------------------------------- 61 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~l~~~~~~~l---------------------------------- 61 (497)
.+++.|+++++.+.+.+|.+|+.+++|++|++ ++|.+.+..|..-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 48999999999999999999999999999999 7776544311100
Q ss_pred -----------------cCCCCCCEEECcC--CcCcccCCccCCCCCCCCEEEcCCCcccc-----------------cc
Q 037822 62 -----------------GNLTFLKELYLSS--NQMNGKFPENFGQLSAVEVLDLSENQWEG-----------------II 105 (497)
Q Consensus 62 -----------------~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~ 105 (497)
.....++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111122222221 33443 44445555555555555555544 12
Q ss_pred Chhhhh--cCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc-CCC-CCCccccCC-------CCccEEEee
Q 037822 106 TETHFR--NLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ-LGP-KFPTWLRNQ-------TELTTLVLN 174 (497)
Q Consensus 106 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~l-------~~L~~L~l~ 174 (497)
|. .+. ++++|+.|++++|. ....++..+..+++|+.|++++|+ +.. .+|..++.+ ++|+.|+++
T Consensus 482 P~-~l~f~~L~~L~~L~Ls~N~----l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NE-ELSWSNLKDLTDVELYNCP----NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TS-CCCGGGCTTCCEEEEESCT----TCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred Ch-hhhhccCCCCCEEECcCCC----CCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 32 222 45555555554431 223344444455555555555554 433 344333332 255555555
Q ss_pred ccccccccCc--hhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC---ccc-cceEecccCccc
Q 037822 175 NVRISDTIPD--WFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW---SFN-VTKLYLRDNSFS 248 (497)
Q Consensus 175 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~---~~~-L~~L~l~~~~~~ 248 (497)
+|.+. .+|. .+..+ ++|+.|++++|.+. .+|....++.|+.|++++|.+. ..|.. .++ |+.|++++|.+.
T Consensus 557 ~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 55554 4444 44433 35555555555555 4443333445555555555555 22222 224 666666666665
Q ss_pred ccCChhhhcCC--CCccEEEcccCcceeccccc---cc--CcCCccEEEeecceeecccCccc-ccCCCCCEEECccCcc
Q 037822 249 GPIPRDFGQKI--PFLTDLDISFNSLNGSVSKS---IC--NLQQLLTLVISNNNLSGEIPRLW-SNISSLYILDMSNNSL 320 (497)
Q Consensus 249 ~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~---l~--~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~i 320 (497)
.+|..+. .. ++|+.|++++|.+.+..|.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus 633 -~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 633 -YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp -SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred -cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 5554332 22 34777777777776543321 12 2347888888888877 455443 4677888888888887
Q ss_pred cccCCcccc-------cccCCcEEEeecceeeeeCCcccc--cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC-
Q 037822 321 SGEIPESIG-------SLLSVRFLILCNNHISGEVPPSLK--NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS- 390 (497)
Q Consensus 321 ~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~- 390 (497)
.......+. .+++|++|++++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+.. +++|+.|++++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~-L~~L~~L~Ls~N 786 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN-SSQLKAFGIRHQ 786 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CTTCCEEECCCC
T ss_pred CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc-CCCCCEEECCCC
Confidence 733222222 2348888888888887 6677665 78888888888888874 6766664 88888888866
Q ss_pred -----cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcc
Q 037822 391 -----NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY 441 (497)
Q Consensus 391 -----n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 441 (497)
|.+.+.+|..+..+++|+.|++++|++ +.+|..+. ++|+.|++++|++
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 666666777777777777777777777 35565543 3444444444443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-42 Score=355.72 Aligned_cols=356 Identities=18% Similarity=0.263 Sum_probs=219.4
Q ss_pred CCcccccCCccccCCCCCCEEECcCCcCccc-----------------CCccCC--CCCCCCEEEcCCCccccccChhhh
Q 037822 50 HNSFVGSIPPSIGNLTFLKELYLSSNQMNGK-----------------FPENFG--QLSAVEVLDLSENQWEGIITETHF 110 (497)
Q Consensus 50 ~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~ 110 (497)
+|.+++ +|.++.++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|. .+
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HH
Confidence 456665 677778888888888888887753 777777 788888888888877766665 67
Q ss_pred hcCCCCceEeccCccccceeee-cccCCCCCC------ccccEEEccCCcCCCCCCc--cccCCCCccEEEeeccccccc
Q 037822 111 RNLSNLKELALNKQSENISLIF-NISSHWIPP------FKLTFINIRSCQLGPKFPT--WLRNQTELTTLVLNNVRISDT 181 (497)
Q Consensus 111 ~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~ 181 (497)
.++++|+.|++++|. .... .++..+..+ ++|++|++++|++. .+|. .++.+++|+.|++++|.+.+.
T Consensus 270 ~~l~~L~~L~Ls~n~---~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 270 KALPEMQLINVACNR---GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTCSSCCEEECTTCT---TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hcCCCCCEEECcCCC---CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 778888888887753 0222 344444443 78888888888887 7777 889999999999999998877
Q ss_pred cCchhhhcccCccEEEcccccccccCCc-cccccC-CCEEEccCCccccCCCCCccccceEecccCcccccCChhhh-cC
Q 037822 182 IPDWFWQLDLTLDELDVAYNELSGSIPN-SLGFRF-PATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG-QK 258 (497)
Q Consensus 182 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 258 (497)
.| .+..+ ++|++|++++|.+. .+|. ...++. |+.+++++|.+. .+|..+. ..
T Consensus 346 ip-~~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~----------------------~lp~~~~~~~ 400 (636)
T 4eco_A 346 LP-AFGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK----------------------YIPNIFDAKS 400 (636)
T ss_dssp CC-CCEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS----------------------SCCSCCCTTC
T ss_pred hh-hhCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc----------------------ccchhhhhcc
Confidence 77 66555 58899999988887 4433 334555 666666666555 2222211 01
Q ss_pred CCCccEEEcccCcceeccccccc-------CcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCccccc-
Q 037822 259 IPFLTDLDISFNSLNGSVSKSIC-------NLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGS- 330 (497)
Q Consensus 259 ~~~L~~L~l~~~~i~~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~- 330 (497)
+++|++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.++......+..
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 23455555555555444444444 4455555555555555222222334555666666666555222222222
Q ss_pred ------ccCCcEEEeecceeeeeCCcccc--cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEc------cCcccccC
Q 037822 331 ------LLSVRFLILCNNHISGEVPPSLK--NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL------RSNYFNGT 396 (497)
Q Consensus 331 ------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l------~~n~~~~~ 396 (497)
+++|++|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+.. +++|+.|++ ++|++.+.
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~-l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN-SSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG-CSSCCEEECCSCBCTTCCBCCCC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc-CCCCCEEECCCCcccccCccccc
Confidence 125666666666665 4555554 56666666666666653 5555554 666666666 34555555
Q ss_pred CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccc
Q 037822 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYE 442 (497)
Q Consensus 397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~ 442 (497)
+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++.
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 6666666666666666666663 4555444 56666666666653
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-41 Score=345.40 Aligned_cols=452 Identities=19% Similarity=0.151 Sum_probs=319.9
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL 96 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 96 (497)
...++++++++.+++ +|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 355899999999985 565554 89999999999999777789999999999999999999888889999999999999
Q ss_pred CCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCc--cEEEee
Q 037822 97 SENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTEL--TTLVLN 174 (497)
Q Consensus 97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L--~~L~l~ 174 (497)
++|++++ ++.. .+++|++|++++|.+. ...++..+..+++|++|++++|++.... +..+++| +.|+++
T Consensus 108 s~N~l~~-lp~~---~l~~L~~L~Ls~N~l~---~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 108 SHNRLQN-ISCC---PMASLRHLDLSFNDFD---VLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLD 177 (562)
T ss_dssp TTSCCCE-ECSC---CCTTCSEEECCSSCCS---BCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEE
T ss_pred CCCcCCc-cCcc---ccccCCEEECCCCCcc---ccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEee
Confidence 9999986 5543 7999999999996543 1134467888899999999999887633 4444555 999999
Q ss_pred cccc--ccccCchhhhcccCccEEEcccccccccCCccc--cccCCCEEEccCCcc-----ccCCC--CCccccceEecc
Q 037822 175 NVRI--SDTIPDWFWQLDLTLDELDVAYNELSGSIPNSL--GFRFPATVDLSSNSF-----EGPLP--LWSFNVTKLYLR 243 (497)
Q Consensus 175 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~~~~-----~~~~~--~~~~~L~~L~l~ 243 (497)
+|.+ ++..|..+..+....-.++++.|.+.+..+... .++.++.+++++|.. .+..+ ...+.++.+++.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 9998 777777766543223356777777766554432 456788888888741 11000 112356666666
Q ss_pred cCcccccCChhhh--cCCCCccEEEcccCcceecccccc-----cCcCCccEEEeecceeecccC-cccc---cCCCCCE
Q 037822 244 DNSFSGPIPRDFG--QKIPFLTDLDISFNSLNGSVSKSI-----CNLQQLLTLVISNNNLSGEIP-RLWS---NISSLYI 312 (497)
Q Consensus 244 ~~~~~~~~~~~~~--~~~~~L~~L~l~~~~i~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~---~~~~L~~ 312 (497)
++.+.+....... ...++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..| ..+. ...+|+.
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence 6554422111111 124588889998888876666665 4455555555555544 223 1111 1256888
Q ss_pred EECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh--hHhhhCCCCCEEEccC
Q 037822 313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA--WIGESMPSLSILRLRS 390 (497)
Q Consensus 313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~~~~~L~~L~l~~ 390 (497)
|++++|.+.... ....+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++. ..+..+++|+.|++++
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTT
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCC
Confidence 888888775222 1256788888888888888767778888888888888888887 3332 2233478888888888
Q ss_pred cccccCCCc-ccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822 391 NYFNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS 469 (497)
Q Consensus 391 n~~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 469 (497)
|++++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|++.. .+..+..+++|+.|+++
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~---------ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS---------IPKDVTHLQALQELNVA 481 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC---------CCTTTTSSCCCSEEECC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc---------cChhhcCCCCCCEEECC
Confidence 888864554 477788888888888888766665554 688888888887742 22223478889999999
Q ss_pred CCcccccCChhhhccCCCCeEECCCCCC
Q 037822 470 SNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 470 ~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
+|.+++..+..+..+++|++|++++|++
T Consensus 482 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 9999843333488899999999999875
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-41 Score=340.39 Aligned_cols=422 Identities=17% Similarity=0.171 Sum_probs=338.9
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccC
Q 037822 44 RYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNK 123 (497)
Q Consensus 44 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 123 (497)
++|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+. .|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCC
Confidence 58999999998 6777665 8999999999999977778899999999999999999885555 899999999999999
Q ss_pred ccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeeccccccccCchhhhcccCc--cEEEccc
Q 037822 124 QSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTL--DELDVAY 200 (497)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~ 200 (497)
|.+. .++.. .+++|++|++++|++.. ..|..++.+++|+.|++++|.+.+. .+..+ +++ +++++++
T Consensus 79 N~l~-----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L~L~~L~l~~ 147 (520)
T 2z7x_B 79 NKLV-----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-AHLNISKVLLVL 147 (520)
T ss_dssp SCCC-----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-TTSCEEEEEEEE
T ss_pred Ccee-----ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hcccc-ccceeeEEEeec
Confidence 7654 34444 78899999999999987 5788999999999999999998763 33333 466 9999999
Q ss_pred ccc--cccCCcccccc--CCCEEEccCCccccCCCC----CccccceEecccCc-------ccccCChhhhcCCCCccEE
Q 037822 201 NEL--SGSIPNSLGFR--FPATVDLSSNSFEGPLPL----WSFNVTKLYLRDNS-------FSGPIPRDFGQKIPFLTDL 265 (497)
Q Consensus 201 ~~~--~~~~~~~~~~~--~l~~l~l~~~~~~~~~~~----~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L 265 (497)
|.+ .+..+..+..- ....+++++|.+.+..+. .+++|+.+++++|. +.+.++ . +..+++|+.|
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~-l~~l~~L~~L 225 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-K-LQTNPKLSNL 225 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-G-GGGCTTCCEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-h-hccccchhhc
Confidence 998 55555544321 233567888877765544 25689999999986 554444 2 3578999999
Q ss_pred EcccCcceeccccccc---CcCCccEEEeecceeecccCccc-----ccCCCCCEEECccCcccccCCcccccc---cCC
Q 037822 266 DISFNSLNGSVSKSIC---NLQQLLTLVISNNNLSGEIPRLW-----SNISSLYILDMSNNSLSGEIPESIGSL---LSV 334 (497)
Q Consensus 266 ~l~~~~i~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~~---~~L 334 (497)
+++++.+.+..+..+. ..++|++|++++|.+.+..|..+ ..+++|+.+++++|.+ ......+..+ .+|
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L 304 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNI 304 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCC
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCce
Confidence 9999988753322221 24699999999999998888887 8899999999999998 2332444444 679
Q ss_pred cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc--CCCcccCCCCCCCEEEc
Q 037822 335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG--TIPPELCKLPALHILDL 412 (497)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l 412 (497)
++|++++|.+... + ....+++|++|++++|.+.+.+|..+.. +++|+.|++++|++++ .+|..+..+++|++|++
T Consensus 305 ~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 305 KNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp SEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred eEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 9999999998632 2 2368899999999999999777776654 9999999999999986 45567899999999999
Q ss_pred cCCcCcCCCCc-cccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEE
Q 037822 413 SHNNLSGIIPP-CVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLN 491 (497)
Q Consensus 413 ~~n~i~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~ 491 (497)
++|++.+.+|. .+..+++|+.|++++|++....+. .+ .++|+.|++++|.++ .+|..+..+++|++|+
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~l--~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~ 450 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--------CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG--------SC--CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhh--------hh--cccCCEEECCCCccc-ccchhhhcCCCCCEEE
Confidence 99999985665 488999999999999998643322 11 279999999999998 7888888999999999
Q ss_pred CCCCCC
Q 037822 492 LSRNHL 497 (497)
Q Consensus 492 l~~n~i 497 (497)
+++|+|
T Consensus 451 L~~N~l 456 (520)
T 2z7x_B 451 VASNQL 456 (520)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 999986
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-41 Score=355.10 Aligned_cols=371 Identities=19% Similarity=0.215 Sum_probs=259.9
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCcc-----------------cCCccCC--CCCCCCEEEcCCCccccccChhhhh
Q 037822 51 NSFVGSIPPSIGNLTFLKELYLSSNQMNG-----------------KFPENFG--QLSAVEVLDLSENQWEGIITETHFR 111 (497)
Q Consensus 51 ~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~ 111 (497)
|.+++ +|..|.++++|++|++++|.+++ .+|..++ ++++|++|++++|.+.+.+|. .+.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHh
Confidence 55554 66777777777777777777775 2666666 777777777777776666664 677
Q ss_pred cCCCCceEeccCcc-ccceeee-cccCC-------CCCCccccEEEccCCcCCCCCCc--cccCCCCccEEEeecccccc
Q 037822 112 NLSNLKELALNKQS-ENISLIF-NISSH-------WIPPFKLTFINIRSCQLGPKFPT--WLRNQTELTTLVLNNVRISD 180 (497)
Q Consensus 112 ~l~~L~~L~l~~~~-~~~~~~~-~~~~~-------~~~~~~L~~l~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~ 180 (497)
++++|+.|++++|. +. . .++.. +..+++|+.|++++|.+. .+|. .++.+++|+.|++++|.+.
T Consensus 513 ~L~~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 513 DLPELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GCSSCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCCCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 77777777777753 22 1 23332 233447777777777776 6666 7777777777777777776
Q ss_pred ccCchhhhcccCccEEEcccccccccCCc-cccccC-CCEEEccCCccccCCCCCc-----cccceEecccCcccccCCh
Q 037822 181 TIPDWFWQLDLTLDELDVAYNELSGSIPN-SLGFRF-PATVDLSSNSFEGPLPLWS-----FNVTKLYLRDNSFSGPIPR 253 (497)
Q Consensus 181 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~-l~~l~l~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~ 253 (497)
.+| .+..+ ++|+.|++++|.+. .+|. ...++. |+.|++++|.+. ..|..+ ++|+.|++++|.+.+.+|.
T Consensus 587 ~lp-~~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 587 HLE-AFGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp BCC-CCCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred cch-hhcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 555 45444 47777777777777 4443 335666 777888877777 333332 2388888888888765442
Q ss_pred hhh----cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCccccc--------CCCCCEEECccCccc
Q 037822 254 DFG----QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSN--------ISSLYILDMSNNSLS 321 (497)
Q Consensus 254 ~~~----~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~--------~~~L~~L~l~~n~i~ 321 (497)
... -..++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|+++
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc
Confidence 110 13457889999999888444444457888999999998887 55544322 238999999999988
Q ss_pred ccCCcccc--cccCCcEEEeecceeeeeCCcccccCCCCCEEecCC------CcCcccCChhHhhhCCCCCEEEccCccc
Q 037822 322 GEIPESIG--SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD------NQLSGNIPAWIGESMPSLSILRLRSNYF 393 (497)
Q Consensus 322 ~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~i~~~~~~~~~~~~~~L~~L~l~~n~~ 393 (497)
.+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|..+.. +++|+.|++++|++
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~-L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT-CPSLIQLQIGSNDI 818 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG-CSSCCEEECCSSCC
T ss_pred -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc-CCCCCEEECCCCCC
Confidence 6676666 88999999999999885 788888899999999976 7777788887776 99999999999999
Q ss_pred ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCc
Q 037822 394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVK 440 (497)
Q Consensus 394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 440 (497)
+.+|..+. ++|+.|++++|++....+..+.....+..+.+..++
T Consensus 819 -~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 819 -RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp -CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred -CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 47887655 699999999999986666665544444444443333
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.4e-38 Score=324.79 Aligned_cols=467 Identities=18% Similarity=0.120 Sum_probs=339.4
Q ss_pred CCccccCCCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCC
Q 037822 3 VSDFIDGLSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFP 82 (497)
Q Consensus 3 ~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 82 (497)
+|++...+.+. ..-+..+.++-.++ .+|..+. +++++||+++|.++.+.+.+|.++++|++|++++|.++...+
T Consensus 20 ~p~~~~~c~~~---~~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~ 93 (635)
T 4g8a_A 20 IPESWEPCVEV---VPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 93 (635)
T ss_dssp -----CCSEEE---ETTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCcccc---CCCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh
Confidence 45555444311 13456788887887 5565554 589999999999998788899999999999999999998878
Q ss_pred ccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCcc
Q 037822 83 ENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTW 161 (497)
Q Consensus 83 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~ 161 (497)
.+|.++++|++|++++|++++ ++...|.++++|++|++++|.+. ...+..+..+++|++|++++|.+.. ..|..
T Consensus 94 ~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~Ls~N~l~----~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 168 (635)
T 4g8a_A 94 GAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA----SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEECTTSCCC----CSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred hHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEECCCCcCC----CCChhhhhcCcccCeeccccCccccCCCchh
Confidence 889999999999999999987 55558999999999999996443 2233457889999999999999875 46788
Q ss_pred ccCCCCccEEEeeccccccccCchhhhc---ccCccEEEcccccccccCCccccccCCCEEEccCCccccC---------
Q 037822 162 LRNQTELTTLVLNNVRISDTIPDWFWQL---DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGP--------- 229 (497)
Q Consensus 162 l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--------- 229 (497)
++.+++|+.|++++|.+.+..+..+..+ ......++++.|.+....+..+....+..+++.++.....
T Consensus 169 ~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l 248 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 248 (635)
T ss_dssp GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTT
T ss_pred hccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCC
Confidence 8999999999999999987777766543 2234578888998876665555444455555555422100
Q ss_pred ----------------------CCCC------------------------------ccccceEecccCcccccCChhhhc
Q 037822 230 ----------------------LPLW------------------------------SFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 230 ----------------------~~~~------------------------------~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
.... ..+++.+.+.++.+....+ ..
T Consensus 249 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~ 325 (635)
T 4g8a_A 249 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FS 325 (635)
T ss_dssp TTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GG
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cc
Confidence 0000 0022222222222221100 11
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCccccc--CCcccccccCCc
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGE--IPESIGSLLSVR 335 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~L~ 335 (497)
....++.|++.++.+....+ ..++.|+.+.+..|.... +.....+++|+.+++++|.+... .+..+..+.+|+
T Consensus 326 ~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 326 YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp SCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred cchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC--Ccccccccccccchhhccccccccccccchhhhhhhh
Confidence 23344455555544432211 123445555555554432 12234578899999998887532 344556678899
Q ss_pred EEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCC
Q 037822 336 FLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHN 415 (497)
Q Consensus 336 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 415 (497)
++++..+... ..+..+..+++|+.+++..+......+...+..+++++.++++.|.+....+..+..++.|+.|++++|
T Consensus 401 ~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 401 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 9999988876 445667889999999999998776666666666899999999999999888888999999999999999
Q ss_pred cC-cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCC
Q 037822 416 NL-SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSR 494 (497)
Q Consensus 416 ~i-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~ 494 (497)
.+ ....|..+..+++|+.|++++|++.. ..+..+.++++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~--------l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred ccccccCchhhhhccccCEEECCCCccCC--------cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 75 44578899999999999999999854 3345578899999999999999988899999999999999999
Q ss_pred CCC
Q 037822 495 NHL 497 (497)
Q Consensus 495 n~i 497 (497)
|+|
T Consensus 552 N~l 554 (635)
T 4g8a_A 552 NHI 554 (635)
T ss_dssp SCC
T ss_pred CcC
Confidence 986
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-37 Score=307.90 Aligned_cols=384 Identities=19% Similarity=0.173 Sum_probs=227.7
Q ss_pred ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcc-cCCccCCCCCCCCEEEcC
Q 037822 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNG-KFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~ 97 (497)
-+.++.+++.++ .+|. + .++|++|++++|.+.+..|..|.++++|++|++++|.+.. ..+..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 445777777776 3444 2 2678888888888877777778888888888888887753 445667888888888888
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCcc-ccCCCCccEEEeecc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTW-LRNQTELTTLVLNNV 176 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 176 (497)
+|++++..+. .+.++++|++|++++|.+... ......+..+++|++|++++|++....|.. +..+++|+.|++++|
T Consensus 88 ~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 88 YNQFLQLETG-AFNGLANLEVLTLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TCTTCEECTT-TTTTCTTCCEEECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccCccChh-hccCcccCCEEeCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 8887765444 677788888888877543210 011123566677888888888877666655 788888888888888
Q ss_pred ccccccCchhhhcc-cCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhh
Q 037822 177 RISDTIPDWFWQLD-LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDF 255 (497)
Q Consensus 177 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (497)
.+.+..+..+.... .+++.+++++|.+.+..+..+... ........++|+.|++++|.+.+..+..+
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE------------KCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH------------HHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cccccChhhhhccccccccccccccCcccccchhhcccc------------ccccccccceeeeEecCCCcccccchhhh
Confidence 88777666655432 367777777776654332211100 00001112356666666666655444444
Q ss_pred hcC--CCCccEEEcccCcceec----------ccccccC--cCCccEEEeecceeecccCcccccCCCCCEEECccCccc
Q 037822 256 GQK--IPFLTDLDISFNSLNGS----------VSKSICN--LQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS 321 (497)
Q Consensus 256 ~~~--~~~L~~L~l~~~~i~~~----------~~~~l~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~ 321 (497)
... .++++.|++++|...+. .+..+.. .++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred hccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 321 25666666666643321 1111111 245566666666555555555555566666666666555
Q ss_pred ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCccc
Q 037822 322 GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL 401 (497)
Q Consensus 322 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 401 (497)
+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++..+..+
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG-LPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc-cccccEEECCCCccccCCHhHh
Confidence 555555555556666666666555444555555556666666666555333433332 5556666666655554333344
Q ss_pred CCCCCCCEEEccCCcCcCCCC
Q 037822 402 CKLPALHILDLSHNNLSGIIP 422 (497)
Q Consensus 402 ~~l~~L~~L~l~~n~i~~~~~ 422 (497)
..+++|++|++++|++.+..|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 555556666666665554433
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-37 Score=316.96 Aligned_cols=428 Identities=19% Similarity=0.145 Sum_probs=324.0
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCc
Q 037822 38 GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK 117 (497)
Q Consensus 38 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 117 (497)
..+...++++++++.++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+++..+. .|.++++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCC
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCC
Confidence 34455689999999998 4776654 8999999999999977778999999999999999999985554 899999999
Q ss_pred eEeccCccccceeeecccCCCCCCccccEEEccCCcCCC-CCCccccCCCCccEEEeeccccccccCchhhhcccCccEE
Q 037822 118 ELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP-KFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDEL 196 (497)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 196 (497)
+|++++|.+. .++.. .+++|++|++++|++.. ..|..++.+++|+.|++++|.+.+.....+..+ +|+++
T Consensus 104 ~L~Ls~N~l~-----~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L--~L~~L 174 (562)
T 3a79_B 104 YLDVSHNRLQ-----NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL--HLSCI 174 (562)
T ss_dssp EEECTTSCCC-----EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS--CEEEE
T ss_pred EEECCCCcCC-----ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc--eeeEE
Confidence 9999997544 34444 78899999999999986 456899999999999999999876433333222 34999
Q ss_pred Ecccccc--cccCCccccccC--CCEEEccCCccccCCCC----CccccceEecccCc-----ccccCChhhhcCCCCcc
Q 037822 197 DVAYNEL--SGSIPNSLGFRF--PATVDLSSNSFEGPLPL----WSFNVTKLYLRDNS-----FSGPIPRDFGQKIPFLT 263 (497)
Q Consensus 197 ~l~~~~~--~~~~~~~~~~~~--l~~l~l~~~~~~~~~~~----~~~~L~~L~l~~~~-----~~~~~~~~~~~~~~~L~ 263 (497)
++++|.+ .+..+..+..-. .-.++++.|.+.+..+. ...+|+.+++++|. +.+.. .. +...+.++
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~-l~~l~~L~ 252 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE-LTRGPTLL 252 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH-HHSCSSCE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HH-HhccCcce
Confidence 9999998 666665553222 22457777777664443 24588999999874 22111 12 25688999
Q ss_pred EEEcccCcceeccccc---ccCcCCccEEEeecceeecccCccc-----ccCCCCCEEECccCcccccCC-ccccc---c
Q 037822 264 DLDISFNSLNGSVSKS---ICNLQQLLTLVISNNNLSGEIPRLW-----SNISSLYILDMSNNSLSGEIP-ESIGS---L 331 (497)
Q Consensus 264 ~L~l~~~~i~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~-~~l~~---~ 331 (497)
.+++.++.+.+..... ....++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..| ..+.. .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~ 330 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE 330 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence 9999888765321111 1224599999999999987788766 5666666666666665 222 22222 2
Q ss_pred cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC--CCcccCCCCCCCE
Q 037822 332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT--IPPELCKLPALHI 409 (497)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~ 409 (497)
.+|++|++++|.+... + ....+++|++|++++|.+.+..+..+.. +++|+.|++++|++++. .|..+..+++|++
T Consensus 331 ~~L~~L~l~~n~~~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHM-V-CPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCcccc-c-CccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence 6799999999998532 1 2267899999999999999767766654 99999999999999852 2456899999999
Q ss_pred EEccCCcCcCCCC-ccccCCCCCcccCCCCCcccccceeeeeCccccccccc-cccCEEEccCCcccccCChhhhccCCC
Q 037822 410 LDLSHNNLSGIIP-PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL-YLVNLMDLSSNNLSGEMPVELTRLIHL 487 (497)
Q Consensus 410 L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L 487 (497)
|++++|++.+.+| ..+..+++|+.|++++|++....+. .+ ++|+.|++++|.++ .+|..+..+++|
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 9999999998455 4588999999999999998543222 22 68999999999998 677777799999
Q ss_pred CeEECCCCCC
Q 037822 488 GTLNLSRNHL 497 (497)
Q Consensus 488 ~~l~l~~n~i 497 (497)
++|++++|+|
T Consensus 476 ~~L~L~~N~l 485 (562)
T 3a79_B 476 QELNVASNQL 485 (562)
T ss_dssp SEEECCSSCC
T ss_pred CEEECCCCCC
Confidence 9999999986
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-37 Score=305.76 Aligned_cols=366 Identities=19% Similarity=0.216 Sum_probs=297.1
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEE
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVG-SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLD 95 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 95 (497)
++|++|++++|.+++..+..|+.+++|++|++++|.+.+ ..+.+|.++++|++|++++|.++...|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 489999999999998889999999999999999999863 4567899999999999999999988899999999999999
Q ss_pred cCCCccccccCh-hhhhcCCCCceEeccCccccceeeecccCC-CCCCccccEEEccCCcCCCCCCccccCC--CCccEE
Q 037822 96 LSENQWEGIITE-THFRNLSNLKELALNKQSENISLIFNISSH-WIPPFKLTFINIRSCQLGPKFPTWLRNQ--TELTTL 171 (497)
Q Consensus 96 l~~n~l~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~l~~l--~~L~~L 171 (497)
+++|.+++..+. ..+..+++|++|++++|.+. ...+.. +..+++|++|++++|++....+..+..+ ++|+.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK----KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC----SCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccC----ccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999999864332 34889999999999996543 223443 6788999999999999998888888776 789999
Q ss_pred EeeccccccccCchhhh-------cccCccEEEcccccccccCCcccc----ccCCCEEEccCCccccCCCCCccccceE
Q 037822 172 VLNNVRISDTIPDWFWQ-------LDLTLDELDVAYNELSGSIPNSLG----FRFPATVDLSSNSFEGPLPLWSFNVTKL 240 (497)
Q Consensus 172 ~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~----~~~l~~l~l~~~~~~~~~~~~~~~L~~L 240 (497)
++++|.+.+..+..+.. ..++|++|++++|.+.+..+..+. ...++.++++++...+....
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------- 257 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------- 257 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc--------
Confidence 99999987654433220 114799999999988876665442 36777778777765432111
Q ss_pred ecccCcccccCChhhh-cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCc
Q 037822 241 YLRDNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNS 319 (497)
Q Consensus 241 ~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 319 (497)
.+.+.+..+..+. ...+.|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 258 ---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 258 ---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp ---CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ---hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 1111111111111 134789999999999998888899999999999999999997778889999999999999999
Q ss_pred ccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC
Q 037822 320 LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398 (497)
Q Consensus 320 i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 398 (497)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..|
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence 98777888999999999999999999888889999999999999999998 5666565569999999999999986544
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7e-37 Score=300.59 Aligned_cols=356 Identities=24% Similarity=0.320 Sum_probs=270.0
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCC-------------CEEECcCCcCcccCCcc
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFL-------------KELYLSSNQMNGKFPEN 84 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~~~~ 84 (497)
+|++|++++|.+ +.+|.+++.+++|++|++++|.+.+.+|.+++++++| ++|++++|.+++ .|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 899999999999 5889999999999999999999998999999998875 999999999984 4442
Q ss_pred CCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccC
Q 037822 85 FGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRN 164 (497)
Q Consensus 85 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~ 164 (497)
.++|++|++++|.+++ ++. .+++|+.|++++|.+. .++.. .++|++|++++|++.. +| .++.
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~-----~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLK-----ALSDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-----CCCSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred ---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccC-----cccCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 4799999999999987 443 2489999999997543 12211 2689999999999876 66 5999
Q ss_pred CCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEeccc
Q 037822 165 QTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244 (497)
Q Consensus 165 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~ 244 (497)
+++|+.|++++|.+++ .|... .+|++|++++|.+.+ ++....++.++.+++++|.+.+ .|....+|+.|++++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGN 224 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCS
T ss_pred CCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcC
Confidence 9999999999999885 44432 489999999999986 5666678899999999999987 444557999999999
Q ss_pred CcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccC
Q 037822 245 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEI 324 (497)
Q Consensus 245 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 324 (497)
|.+. .+|. +..+++|++|++++|.+.+ .|. .+++|++|++++|.+.+ +|.. +++|++|++++|.+++..
T Consensus 225 n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 225 NILE-ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CcCC-cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 9988 6664 4589999999999999875 332 24799999999999884 5543 488999999999988532
Q ss_pred CcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCC
Q 037822 325 PESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKL 404 (497)
Q Consensus 325 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 404 (497)
. ..++|++|++++|.+.+. +. ..++|+.|++++|.+. .+|.. +++|+.|++++|+++ .+|. .+
T Consensus 294 -~---~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~l~-~lp~---~l 356 (454)
T 1jl5_A 294 -E---LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPE---LP 356 (454)
T ss_dssp -C---CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCC---CC
T ss_pred -C---cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc-ccccc----CCcCCEEECCCCccc-cccc---hh
Confidence 1 136899999999998742 21 1258999999999998 46653 689999999999998 5665 47
Q ss_pred CCCCEEEccCCcCcC--CCCccccCC
Q 037822 405 PALHILDLSHNNLSG--IIPPCVGNF 428 (497)
Q Consensus 405 ~~L~~L~l~~n~i~~--~~~~~l~~l 428 (497)
++|++|++++|++.+ .+|.++.++
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred hhccEEECCCCCCCcCCCChHHHHhh
Confidence 899999999999998 677777665
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.6e-35 Score=288.07 Aligned_cols=344 Identities=24% Similarity=0.340 Sum_probs=222.3
Q ss_pred CCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822 17 SLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL 96 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 96 (497)
+++++|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 488999999998874 44 488899999999999988854 33 8899999999999999885443 888999999999
Q ss_pred CCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecc
Q 037822 97 SENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNV 176 (497)
Q Consensus 97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 176 (497)
++|.+++. + .+.++++|++|++++|.+. .+ ..+..+++|++++++. .+.. . ..++.+++|+.|++++|
T Consensus 120 ~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~-----~~-~~~~~l~~L~~L~l~~-~~~~-~-~~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 120 FNNQITDI-D--PLKNLTNLNRLELSSNTIS-----DI-SALSGLTSLQQLSFGN-QVTD-L-KPLANLTTLERLDISSN 187 (466)
T ss_dssp CSSCCCCC-G--GGTTCTTCSEEEEEEEEEC-----CC-GGGTTCTTCSEEEEEE-SCCC-C-GGGTTCTTCCEEECCSS
T ss_pred CCCCCCCC-h--HHcCCCCCCEEECCCCccC-----CC-hhhccCCcccEeecCC-cccC-c-hhhccCCCCCEEECcCC
Confidence 99988764 2 3788888888888875322 22 2355666677777653 2221 1 23666667777777666
Q ss_pred ccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhh
Q 037822 177 RISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG 256 (497)
Q Consensus 177 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (497)
.+.+. ..+..+ ++|++|++++|.+.+..+ ... +++|+.|++++|.+.+ ++ ..
T Consensus 188 ~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~~-~~~---------------------l~~L~~L~l~~n~l~~-~~--~l 239 (466)
T 1o6v_A 188 KVSDI--SVLAKL-TNLESLIATNNQISDITP-LGI---------------------LTNLDELSLNGNQLKD-IG--TL 239 (466)
T ss_dssp CCCCC--GGGGGC-TTCSEEECCSSCCCCCGG-GGG---------------------CTTCCEEECCSSCCCC-CG--GG
T ss_pred cCCCC--hhhccC-CCCCEEEecCCccccccc-ccc---------------------cCCCCEEECCCCCccc-ch--hh
Confidence 65532 123222 355555555555443221 111 2345555555555442 21 12
Q ss_pred cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|++.+..+ +..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 456777777777777764433 66677777777777776632 22 6667777777777777764332 566777777
Q ss_pred EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|++++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+. .+++|+.|++++|++++..| +..+++|+.|++++|+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCC-ch-hhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 7777777664333 5667777777777777663 22 232 36777777777777765443 6667777777777777
Q ss_pred CcC
Q 037822 417 LSG 419 (497)
Q Consensus 417 i~~ 419 (497)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 664
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.6e-36 Score=294.77 Aligned_cols=396 Identities=20% Similarity=0.207 Sum_probs=231.8
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCC-------------CEEEcCCCcccccc
Q 037822 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAV-------------EVLDLSENQWEGII 105 (497)
Q Consensus 39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~ 105 (497)
..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++.+.+| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 458999999999999 5899999999999999999999998999999998865 999999998876 3
Q ss_pred ChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCch
Q 037822 106 TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDW 185 (497)
Q Consensus 106 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 185 (497)
+. ..++|+.|++++|.+. .++.. .++|++|++++|++.. ++.. .++|++|++++|.+++ .| .
T Consensus 87 p~----~~~~L~~L~l~~n~l~-----~lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~ 148 (454)
T 1jl5_A 87 PE----LPPHLESLVASCNSLT-----ELPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-E 148 (454)
T ss_dssp CS----CCTTCSEEECCSSCCS-----SCCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-C
T ss_pred CC----CcCCCCEEEccCCcCC-----ccccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-c
Confidence 33 2478889999886443 23332 3678888888887764 2211 1688888888888875 55 4
Q ss_pred hhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccE
Q 037822 186 FWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTD 264 (497)
Q Consensus 186 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 264 (497)
+..+ ++|++|++++|.+++ +|.. ...++.+++++|.+.+... ...++|+.+++++|.+.+ +|. ..++|++
T Consensus 149 ~~~l-~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~ 219 (454)
T 1jl5_A 149 LQNS-SFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPD----LPLSLES 219 (454)
T ss_dssp CTTC-TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCC----CCTTCCE
T ss_pred cCCC-CCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCC----CcCcccE
Confidence 5554 588888888888875 3332 2478888888888776432 124578888888888763 332 2357888
Q ss_pred EEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeeccee
Q 037822 265 LDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHI 344 (497)
Q Consensus 265 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~ 344 (497)
|++++|.+. ..| .+..+++|++|++++|.+. .+|.. +++|+.|++++|.+.+ .+.. +++|++|++++|.+
T Consensus 220 L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 888888877 444 4777888888888888877 34432 4778888888888774 3332 36788888888887
Q ss_pred eeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCcc
Q 037822 345 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPC 424 (497)
Q Consensus 345 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~ 424 (497)
.+. +. ..++|+.|++++|.+.+ ++. .+++|+.|++++|++++ +|.. +++|++|++++|+++ .+|.
T Consensus 290 ~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 290 SGL-SE---LPPNLYYLNASSNEIRS-LCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp SEE-SC---CCTTCCEEECCSSCCSE-ECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred Ccc-cC---cCCcCCEEECcCCcCCc-ccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence 642 21 12678888888888773 332 13578888888888874 5543 578888888888887 4554
Q ss_pred ccCCCCCcccCCCCCcccc--cceeeeeCcc-----ccccccccccCEEEccCCcccc--cCChhhhccCCCCeEECCCC
Q 037822 425 VGNFSGMKVEPPDSVKYEG--SLQVVLKGSE-----YVFYTTLYLVNLMDLSSNNLSG--EMPVELTRLIHLGTLNLSRN 495 (497)
Q Consensus 425 l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n 495 (497)
.+++|+.|++++|++.. .++..+.... ......+++|+.|++++|.+++ .+|. +++.|.+++|
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~ 426 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSE 426 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCc
Confidence 46788888888887765 2222111000 0000112678888888888876 3443 3445555554
Q ss_pred C
Q 037822 496 H 496 (497)
Q Consensus 496 ~ 496 (497)
.
T Consensus 427 ~ 427 (454)
T 1jl5_A 427 R 427 (454)
T ss_dssp -
T ss_pred c
Confidence 3
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-34 Score=284.28 Aligned_cols=323 Identities=19% Similarity=0.177 Sum_probs=239.4
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
.-+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++...|.+|.++++|++|+++
T Consensus 12 ~~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 12 QDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 4567888888888 4555553 689999999999988778889999999999999999998888899999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+++ ++...|.++++|++|++++|.+. ...+..+..+++|++|++++|.+....+..|..+++|+.|++++|.
T Consensus 89 ~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 89 SNRLKL-IPLGVFTGLSNLTKLDISENKIV----ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp SSCCCS-CCTTSSTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred CCcCCc-cCcccccCCCCCCEEECCCCccc----cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 999886 44447788888888888875332 2334455556666666666666655555566666666666666666
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+++..+..+..+ ++|+.|++++|. +.+ ++...+.
T Consensus 164 l~~~~~~~l~~l-~~L~~L~l~~n~--------------------------------------------i~~-~~~~~~~ 197 (477)
T 2id5_A 164 LTSIPTEALSHL-HGLIVLRLRHLN--------------------------------------------INA-IRDYSFK 197 (477)
T ss_dssp CSSCCHHHHTTC-TTCCEEEEESCC--------------------------------------------CCE-ECTTCSC
T ss_pred CcccChhHhccc-CCCcEEeCCCCc--------------------------------------------CcE-eChhhcc
Confidence 654333333322 244444444333 332 2222335
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.+++|++|++++|...+..+.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 198 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (477)
T 2id5_A 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEI 277 (477)
T ss_dssp SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEE
T ss_pred cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEE
Confidence 67889999999888766666666666789999999998884333567888899999999998887777788888999999
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
++++|.+.+..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++.+
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ECCSSCCSEECTTTBTTCTTCCEEECCSSCCS-CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ECCCCccceECHHHhcCcccCCEEECCCCcCc-eeCHhHcCCCcccCEEEccCCCccC
Confidence 99999988777888888999999999999888 5666555558889999999988874
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=287.02 Aligned_cols=330 Identities=20% Similarity=0.171 Sum_probs=269.8
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|++++|.+++..+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 89999999999998888999999999999999999998889999999999999999999997666778999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+.+..+. .+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.
T Consensus 113 ~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 113 ENKIVILLDY-MFQDLYNLKSLEVGDNDLV----YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TSCCCEECTT-TTTTCTTCCEEEECCTTCC----EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCccccCChh-HccccccCCEEECCCCccc----eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 9999875554 8999999999999997443 3445678889999999999999987777789999999999999999
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+.+..+..+..+ ++|++|++++|.. .+.++...+
T Consensus 188 i~~~~~~~~~~l-~~L~~L~l~~~~~--------------------------------------------~~~~~~~~~- 221 (477)
T 2id5_A 188 INAIRDYSFKRL-YRLKVLEISHWPY--------------------------------------------LDTMTPNCL- 221 (477)
T ss_dssp CCEECTTCSCSC-TTCCEEEEECCTT--------------------------------------------CCEECTTTT-
T ss_pred CcEeChhhcccC-cccceeeCCCCcc--------------------------------------------ccccCcccc-
Confidence 886555444433 3555555554432 223333332
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
...+|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEE
T ss_pred cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEE
Confidence 34589999999999987666788999999999999999997777889999999999999999998888999999999999
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcc
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 400 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 400 (497)
++++|.+++..+..|..+++|+.|++++|++......... ......+.+.++...+..|..
T Consensus 302 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 302 NVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp ECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--HTTTTSSCCTTCCCBEEESGG
T ss_pred ECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--HhhhhccccCccCceeCCchH
Confidence 9999999866666788999999999999998744332221 123334445555444434433
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.3e-34 Score=280.97 Aligned_cols=329 Identities=26% Similarity=0.348 Sum_probs=266.5
Q ss_pred CCCCCCCCCccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCC
Q 037822 10 LSECTNSSLLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLS 89 (497)
Q Consensus 10 l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 89 (497)
+.++..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++|++++|.+++.. .+..++
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~ 134 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLT 134 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCC
Confidence 3344556699999999999996644 9999999999999999985543 999999999999999998543 389999
Q ss_pred CCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCcc
Q 037822 90 AVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELT 169 (497)
Q Consensus 90 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~ 169 (497)
+|++|++++|.+.+. + .+..+++|+.|.+.++. . .. ..+..+++|++|++++|.+... ..+..+++|+
T Consensus 135 ~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~~~-----~-~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 202 (466)
T 1o6v_A 135 NLNRLELSSNTISDI-S--ALSGLTSLQQLSFGNQV-----T-DL-KPLANLTTLERLDISSNKVSDI--SVLAKLTNLE 202 (466)
T ss_dssp TCSEEEEEEEEECCC-G--GGTTCTTCSEEEEEESC-----C-CC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCCEEECCCCccCCC-h--hhccCCcccEeecCCcc-----c-Cc-hhhccCCCCCEEECcCCcCCCC--hhhccCCCCC
Confidence 999999999999863 2 58999999999996421 1 11 2377889999999999998653 4588999999
Q ss_pred EEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccc
Q 037822 170 TLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSG 249 (497)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 249 (497)
.|++++|.+.+..+ +.. .++|++|++++|.+.+. +....++ +|+.|++++|.+.+
T Consensus 203 ~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~-~~l~~l~---------------------~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 203 SLIATNNQISDITP--LGI-LTNLDELSLNGNQLKDI-GTLASLT---------------------NLTDLDLANNQISN 257 (466)
T ss_dssp EEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCC-GGGGGCT---------------------TCSEEECCSSCCCC
T ss_pred EEEecCCccccccc--ccc-cCCCCEEECCCCCcccc-hhhhcCC---------------------CCCEEECCCCcccc
Confidence 99999999986655 333 36899999999988742 2222333 56666666666553
Q ss_pred cCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccc
Q 037822 250 PIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG 329 (497)
Q Consensus 250 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 329 (497)
..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +.
T Consensus 258 ~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 258 LAP---LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred chh---hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 332 3578999999999999986544 8889999999999999984333 7889999999999999986654 78
Q ss_pred cccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 330 SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 330 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
.+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..| +. .+++|+.|++++|++++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh-cCCCCCEEeccCCcccC
Confidence 899999999999999754 578899999999999999996666 33 49999999999999985
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-33 Score=276.73 Aligned_cols=353 Identities=19% Similarity=0.151 Sum_probs=205.3
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+|++|++++|.+++. | .+..+++|++|++++|.+.+. | +..+++|++|++++|.+++. + +..+++|++|+++
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD 114 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence 777778877777754 4 577777778888877777643 3 67777777777777777743 2 6777777777777
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|++++. + +..+++|+.|++++|.+.. + .+..+++|++|++++|+....+ .++.+++|+.|++++|.
T Consensus 115 ~N~l~~l-~---~~~l~~L~~L~l~~N~l~~-----l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 115 TNKLTKL-D---VSQNPLLTYLNCARNTLTE-----I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp SSCCSCC-C---CTTCTTCCEEECTTSCCSC-----C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred CCcCCee-c---CCCCCcCCEEECCCCccce-----e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 7777653 2 6667777777777654331 1 1444555555555555332222 24445555555555555
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+++. | +..+ ++|++|++++|.++ +......++|+.|++++|++.+ +| ..
T Consensus 182 l~~l-~--l~~l-~~L~~L~l~~N~l~-----------------------~~~l~~l~~L~~L~Ls~N~l~~-ip---~~ 230 (457)
T 3bz5_A 182 ITEL-D--VSQN-KLLNRLNCDTNNIT-----------------------KLDLNQNIQLTFLDCSSNKLTE-ID---VT 230 (457)
T ss_dssp CCCC-C--CTTC-TTCCEEECCSSCCS-----------------------CCCCTTCTTCSEEECCSSCCSC-CC---CT
T ss_pred ccee-c--cccC-CCCCEEECcCCcCC-----------------------eeccccCCCCCEEECcCCcccc-cC---cc
Confidence 5431 1 2111 24444444444433 2211122344455555554442 33 13
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.+++|+.|++++|.+.+.. +..+++|+.|+++.| +|+.|++++|.+.+..+ ++.+++|++|
T Consensus 231 ~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L 291 (457)
T 3bz5_A 231 PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKEL 291 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEE
Confidence 4555555555555554322 233445555554332 34455555555443333 3456667777
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i 417 (497)
++++|...+.+|. ..++|+.|++++ +++|+.|++++|++++ ++ +..+++|+.|++++|++
T Consensus 292 ~Ls~n~~l~~l~~---~~~~L~~L~l~~--------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 292 DVTHNTQLYLLDC---QAAGITELDLSQ--------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCTTCTTCCEEEC---TTCCCSCCCCTT--------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred ECCCCcccceecc---CCCcceEechhh--------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCC
Confidence 7776665444432 234444444433 3678888888888885 33 78888888888888888
Q ss_pred cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhh
Q 037822 418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELT 482 (497)
Q Consensus 418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 482 (497)
++ ++.|..|+++.+.+... +.+..++.+++++|.+++.+|..+.
T Consensus 352 ~~--------l~~L~~L~l~~n~l~g~-------------~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 352 QD--------FSSVGKIPALNNNFEAE-------------GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CB--------CTTGGGSSGGGTSEEEE-------------EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CC--------ccccccccccCCcEEec-------------ceeeecCccccccCcEEEEcChhHh
Confidence 85 23455566666655322 2356677889999999888876543
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=271.50 Aligned_cols=307 Identities=21% Similarity=0.228 Sum_probs=150.6
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
++++|+++++.++...+..|..+++|++|++++|.+.+..+.+|.++++|++|++++|.++...+..+.++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 55566666665554444445555666666666665554444555566666666666666555545555556666666666
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+++ ++...+.++++|++|+++ +|++....+..++.+++|+.|++++|.
T Consensus 126 ~n~l~~-l~~~~~~~l~~L~~L~L~----------------------------~n~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 126 RNDLSS-LPRGIFHNTPKLTTLSMS----------------------------NNNLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECC----------------------------SSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccCc-CCHHHhcCCCCCcEEECC----------------------------CCccCccChhhccCCCCCCEEECCCCc
Confidence 665553 333244555555555544 455544445556666666666666666
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+++.... .+ ++|+.+++++|.+.+.. ....++.+++++|.+........++|+.|++++|.+.+. ....
T Consensus 177 l~~~~~~---~l-~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~---~~l~ 245 (390)
T 3o6n_A 177 LTHVDLS---LI-PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLL 245 (390)
T ss_dssp CSBCCGG---GC-TTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC---GGGG
T ss_pred CCccccc---cc-cccceeecccccccccC----CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc---HHHc
Confidence 6543211 11 35666666666554211 112344444444444333222333455555555544421 1123
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|++. ..+..+..+++|++|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 4445555555555554444444444555555555555444 22333334444555555544444 233334444444444
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCc
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS 369 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 369 (497)
++++|.+.. .+ +..+++|+.|++++|++.
T Consensus 324 ~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 324 YLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCccce-eC--chhhccCCEEEcCCCCcc
Confidence 444444432 11 333444444444444443
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-33 Score=274.51 Aligned_cols=357 Identities=20% Similarity=0.170 Sum_probs=219.4
Q ss_pred CcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChh
Q 037822 29 LNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITET 108 (497)
Q Consensus 29 i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 108 (497)
.....+..++.+++|++|++++|.+.+ +| .+..+++|++|++++|.+++. + +..+++|++|++++|.+++.
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---- 100 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---- 100 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----
T ss_pred cCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----
Confidence 333445578889999999999999985 45 689999999999999999853 3 88899999999999998874
Q ss_pred hhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhh
Q 037822 109 HFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQ 188 (497)
Q Consensus 109 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 188 (497)
.+.++++|++|++++|.+. .++ +..+++|++|++++|++... .++.+++|+.|++++|...+..+ +..
T Consensus 101 ~~~~l~~L~~L~L~~N~l~-----~l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~~~ 168 (457)
T 3bz5_A 101 DVTPLTKLTYLNCDTNKLT-----KLD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTP 168 (457)
T ss_dssp CCTTCTTCCEEECCSSCCS-----CCC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--CTT
T ss_pred ecCCCCcCCEEECCCCcCC-----eec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--ccc
Confidence 2777888888888876433 111 44555566666665555432 14455555555555553222211 111
Q ss_pred cccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcc
Q 037822 189 LDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDIS 268 (497)
Q Consensus 189 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 268 (497)
+ ++|++|++++| .+++......++|+.|++++|.+.+. + +..+++|++|+++
T Consensus 169 l-~~L~~L~ls~n-----------------------~l~~l~l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 169 Q-TQLTTLDCSFN-----------------------KITELDVSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCS 220 (457)
T ss_dssp C-TTCCEEECCSS-----------------------CCCCCCCTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECC
T ss_pred C-CcCCEEECCCC-----------------------ccceeccccCCCCCEEECcCCcCCee-c---cccCCCCCEEECc
Confidence 1 23333333333 33322212233455555555554422 1 1244555555555
Q ss_pred cCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeC
Q 037822 269 FNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEV 348 (497)
Q Consensus 269 ~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 348 (497)
+|.+.+ .| +..+++|++|++++|.+++. + ++.+++|+.|++++| +|++|++++|.+.+.+
T Consensus 221 ~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 221 SNKLTE-ID--VTPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF 280 (457)
T ss_dssp SSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred CCcccc-cC--ccccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence 555543 22 44445555555555554422 1 233444555544433 3344555555544333
Q ss_pred CcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822 349 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF 428 (497)
Q Consensus 349 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 428 (497)
| +..+++|+.|++++|...+.+|. ..++|+.|++ ..+++|++|++++|++++. .+.++
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l 338 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHN 338 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTC
T ss_pred c--ccccccCCEEECCCCcccceecc----CCCcceEech-------------hhcccCCEEECCCCccccc---ccccC
Confidence 3 35567777777777765555543 1344554444 4457999999999999974 38999
Q ss_pred CCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 429 SGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 429 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
++|+.|++++|++. .++.|+.|++++|.+++. ..+..|..+++++|++
T Consensus 339 ~~L~~L~l~~N~l~----------------~l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQ----------------DFSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL 386 (457)
T ss_dssp TTCSEEECCSSCCC----------------BCTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred CcCcEEECCCCCCC----------------CccccccccccCCcEEec-----ceeeecCccccccCcE
Confidence 99999999999984 346778889999999865 3567788889988863
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-31 Score=255.66 Aligned_cols=150 Identities=25% Similarity=0.373 Sum_probs=88.2
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.++.|+.+++++|.+.+..+ +..+++|++|++++|.+.. .+. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L 270 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKML 270 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEE
Confidence 45566666666666553322 5556666666666666652 222 56666666666666666532 345666666666
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i 417 (497)
++++|.+.+. ..+..+++|+.|++++|.+.+..+..+.. +++|+.|++++|++++..+ +..+++|++|++++|++
T Consensus 271 ~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 271 NVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 6666666532 34566667777777777666444443333 6667777777776664322 56666677777776665
Q ss_pred c
Q 037822 418 S 418 (497)
Q Consensus 418 ~ 418 (497)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-32 Score=277.27 Aligned_cols=308 Identities=21% Similarity=0.220 Sum_probs=165.5
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+++.++++++.+....+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 44455555554444443444445555555555555444444444555555555555555444444444455555555555
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+++ ++...|.+ +++|++|++++|.+....+..++.+++|+.|++++|.
T Consensus 132 ~n~l~~-l~~~~~~~----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 132 RNDLSS-LPRGIFHN----------------------------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp SSCCCC-CCTTTTTT----------------------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCC-CCHHHhcc----------------------------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 554443 22223344 4455555555555555556667777777777777777
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+.+..+.. + ++|+.+++++|.+.+.. ....++.+++++|.+....+..+++|+.|++++|.+.+. ..+.
T Consensus 183 l~~~~~~~---l-~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~---~~l~ 251 (597)
T 3oja_B 183 LTHVDLSL---I-PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---AWLL 251 (597)
T ss_dssp CSBCCGGG---C-TTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC---GGGG
T ss_pred CCCcChhh---h-hhhhhhhcccCcccccc----CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC---hhhc
Confidence 66442221 2 46777777776655321 123455566666555544444445666666666665531 2224
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.++.|+.|++++|.+.+..|..+..+++|++|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 56666666666666665555666666666666666666552 3444455566666666666665 344445556666666
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcc
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG 370 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 370 (497)
++++|.+.+. .+..+++|+.|++++|++.+
T Consensus 330 ~L~~N~l~~~---~~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 330 YLDHNSIVTL---KLSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECCSSCCCCC---CCCTTCCCSEEECCSSCEEH
T ss_pred ECCCCCCCCc---ChhhcCCCCEEEeeCCCCCC
Confidence 6666665422 14445566666666665543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-32 Score=261.22 Aligned_cols=312 Identities=21% Similarity=0.175 Sum_probs=234.4
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCce
Q 037822 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE 118 (497)
Q Consensus 39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 118 (497)
.+.++++|+++++.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+. .+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-VFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-HhcCCCCCCE
Confidence 457889999999888755555578888999999999988877777888899999999999888764333 5666776666
Q ss_pred EeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEc
Q 037822 119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198 (497)
Q Consensus 119 L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 198 (497)
|++++ |++....+..++.+++|+.|++++|.+.+..+..+..+ ++|++|++
T Consensus 122 L~L~~----------------------------n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l 172 (390)
T 3o6n_A 122 LVLER----------------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQL 172 (390)
T ss_dssp EECCS----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSC-TTCCEEEC
T ss_pred EECCC----------------------------CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCC-CCCCEEEC
Confidence 66655 44444444456888999999999999887666666555 57888888
Q ss_pred ccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc
Q 037822 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 278 (497)
++|.+++.. ...+++++.+++++|.+.+. ...+.|++|++++|.+.....
T Consensus 173 ~~n~l~~~~-----------------------~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 173 SSNRLTHVD-----------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp CSSCCSBCC-----------------------GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEEEC-
T ss_pred CCCcCCccc-----------------------cccccccceeeccccccccc------CCCCcceEEECCCCeeeeccc-
Confidence 888776431 12233555666666555421 234578888888888764422
Q ss_pred cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM 358 (497)
Q Consensus 279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 358 (497)
...++|++|++++|.+.+ ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ++..+..+++|
T Consensus 223 --~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 223 --PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp --CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred --cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 224788888888888873 2567888899999999999887778888889999999999998874 45556778999
Q ss_pred CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
++|++++|.+. .+|..+.. +++|+.|++++|+++. ++ +..+++|+.|++++|++...
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred CEEECCCCcce-ecCccccc-cCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccch
Confidence 99999999988 67766655 8899999999999884 33 67788999999999998754
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-31 Score=253.22 Aligned_cols=171 Identities=23% Similarity=0.351 Sum_probs=121.4
Q ss_pred cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
..+++|++|++++|.+.+..+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 247 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred ccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence 356777788888777764332 7778888888888888774332 7778888888888888874433 777888888
Q ss_pred EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|++++|.+++ . ..+..+++|+.|++++|.+. .++. +..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus 248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CChh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 8888888763 2 45777888888888888877 3432 3347888888888888876666677778888888888888
Q ss_pred CcCCCCccccCCCCCcccCCCCCc
Q 037822 417 LSGIIPPCVGNFSGMKVEPPDSVK 440 (497)
Q Consensus 417 i~~~~~~~l~~l~~L~~L~l~~~~ 440 (497)
+++..| +..+++|+.|++++|+
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC-
T ss_pred cccccC--hhhhhccceeehhhhc
Confidence 875544 5555555444444333
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=6.7e-31 Score=268.24 Aligned_cols=312 Identities=21% Similarity=0.173 Sum_probs=231.9
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCce
Q 037822 39 YLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKE 118 (497)
Q Consensus 39 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 118 (497)
.+.+++++++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..|.++++|+.
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCE
Confidence 35788888888888876666667888888888888888887777788888888888888888876433 35666666666
Q ss_pred EeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEc
Q 037822 119 LALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDV 198 (497)
Q Consensus 119 L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 198 (497)
|++++ |.+....+..|+.+++|+.|++++|.+.+..|..+..+ ++|+.|++
T Consensus 128 L~L~~----------------------------n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L 178 (597)
T 3oja_B 128 LVLER----------------------------NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQL 178 (597)
T ss_dssp EECCS----------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEEC
T ss_pred EEeeC----------------------------CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEEC
Confidence 66655 45554445557889999999999999987777767665 58888888
Q ss_pred ccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc
Q 037822 199 AYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK 278 (497)
Q Consensus 199 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 278 (497)
++|.+.+.. ...+++|+.+++++|.+.+. ...+.|+.|++++|.+....+.
T Consensus 179 ~~N~l~~~~-----------------------~~~l~~L~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 179 SSNRLTHVD-----------------------LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp TTSCCSBCC-----------------------GGGCTTCSEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEECS
T ss_pred cCCCCCCcC-----------------------hhhhhhhhhhhcccCccccc------cCCchhheeeccCCcccccccc
Confidence 888776432 12233555555555555421 2345677888888777643322
Q ss_pred cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM 358 (497)
Q Consensus 279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 358 (497)
. .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 230 ~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 230 V---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp C---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred c---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 2 3678888888888773 4667888888888888888887778888888888888888888874 45566778899
Q ss_pred CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
+.|++++|.+. .+|..+.. +++|+.|++++|.+++. + +..+++|+.|++++|++.+.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~-l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cEEECCCCCCC-ccCccccc-CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 99999999888 77776654 88999999999988743 3 67788899999999988644
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4.2e-35 Score=291.04 Aligned_cols=362 Identities=18% Similarity=0.188 Sum_probs=215.1
Q ss_pred CCccEEEcCCCCCcccCCcc-ccCCCCCCEEECCCCcccc----cCCccccCCCCCCEEECcCCcCcccCCccC-CCCC-
Q 037822 17 SLLEKLELGFNQLNGDLPSS-LGYLKNLRYLELWHNSFVG----SIPPSIGNLTFLKELYLSSNQMNGKFPENF-GQLS- 89 (497)
Q Consensus 17 ~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~- 89 (497)
++|++|+++++++++..... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 48999999999998654443 7889999999999999874 356778889999999999999876444333 2233
Q ss_pred ---CCCEEEcCCCccccc----cChhhhhcCCCCceEeccCccccceeeecccCCCC-CCccccEEEccCCcCCCCC---
Q 037822 90 ---AVEVLDLSENQWEGI----ITETHFRNLSNLKELALNKQSENISLIFNISSHWI-PPFKLTFINIRSCQLGPKF--- 158 (497)
Q Consensus 90 ---~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~--- 158 (497)
+|++|++++|.+++. ++ ..+..+++|++|++++|.+.......+...+. ..++|++|++++|++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 799999999998742 23 36788889999999886544222222222211 2345666666666655422
Q ss_pred -CccccCCCCccEEEeeccccccccCchhhhc----ccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCC
Q 037822 159 -PTWLRNQTELTTLVLNNVRISDTIPDWFWQL----DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLW 233 (497)
Q Consensus 159 -~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 233 (497)
+..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+++....
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------------------------ 217 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR------------------------ 217 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH------------------------
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH------------------------
Confidence 3444555666666666666554333333221 12344444444433211000
Q ss_pred ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc-----cccCcCCccEEEeecceeecc----cCccc
Q 037822 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK-----SICNLQQLLTLVISNNNLSGE----IPRLW 304 (497)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-----~l~~l~~L~~L~l~~n~~~~~----~~~~~ 304 (497)
.++..+ ..+++|++|++++|.+.+.... .+..+++|++|++++|.++.. ++..+
T Consensus 218 ----------------~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 218 ----------------DLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp ----------------HHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 011111 2456666666666665533211 122356666666666666532 34445
Q ss_pred ccCCCCCEEECccCcccccCCccccc-----ccCCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCChh
Q 037822 305 SNISSLYILDMSNNSLSGEIPESIGS-----LLSVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPAW 375 (497)
Q Consensus 305 ~~~~~L~~L~l~~n~i~~~~~~~l~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 375 (497)
..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 55666777777777665433332222 24667777776666533 2344556677777777777766544443
Q ss_pred Hhhh----CCCCCEEEccCccccc----CCCcccCCCCCCCEEEccCCcCcCC
Q 037822 376 IGES----MPSLSILRLRSNYFNG----TIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 376 ~~~~----~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
+... .++|+.|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3332 3467777777776664 4455566667777777777766543
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-34 Score=287.44 Aligned_cols=392 Identities=15% Similarity=0.117 Sum_probs=233.6
Q ss_pred CCCCEEECCCCcccccCCc-cccCCCCCCEEECcCCcCcc----cCCccCCCCCCCCEEEcCCCccccccChhhhhcCC-
Q 037822 41 KNLRYLELWHNSFVGSIPP-SIGNLTFLKELYLSSNQMNG----KFPENFGQLSAVEVLDLSENQWEGIITETHFRNLS- 114 (497)
Q Consensus 41 ~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~- 114 (497)
++|++|+++++.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+......+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678889988887654333 36778889999999888774 23556777888888888888876543332333344
Q ss_pred ---CCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhc--
Q 037822 115 ---NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQL-- 189 (497)
Q Consensus 115 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-- 189 (497)
+|++|++++|.+...... .++..+..+++|++|++++|.+.+..+..+...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~------------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCG------------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH------------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CCCceeEEEccCCCCCHHHHH------------------------HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 455555555432211111 235556677777777777777665444433321
Q ss_pred --ccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhh----cCCCCcc
Q 037822 190 --DLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFG----QKIPFLT 263 (497)
Q Consensus 190 --~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~ 263 (497)
.++|++|++++|.+++.....+.. .....++|+.|++++|.+.+..+..+. ...+.|+
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~----------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLAS----------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHH----------------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHH----------------HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 124666666666655422111100 000012444444444444332222222 2356888
Q ss_pred EEEcccCcceec----ccccccCcCCccEEEeecceeeccc-----CcccccCCCCCEEECccCccccc----CCccccc
Q 037822 264 DLDISFNSLNGS----VSKSICNLQQLLTLVISNNNLSGEI-----PRLWSNISSLYILDMSNNSLSGE----IPESIGS 330 (497)
Q Consensus 264 ~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~ 330 (497)
+|++++|.+++. .+..+..+++|++|++++|.+.... +..+..+++|++|++++|.++.. .+..+..
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 888888888753 3556667788888888888876432 22223577888888888888753 3455666
Q ss_pred ccCCcEEEeecceeeeeCCcccc-----cCCCCCEEecCCCcCcccC----ChhHhhhCCCCCEEEccCcccccCCCccc
Q 037822 331 LLSVRFLILCNNHISGEVPPSLK-----NCSMMDSLDLGDNQLSGNI----PAWIGESMPSLSILRLRSNYFNGTIPPEL 401 (497)
Q Consensus 331 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~i~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 401 (497)
+++|++|++++|.+.+..+..+. ..++|+.|++++|.+++.. +..+. .+++|+.|++++|.+++..+..+
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh-hCCCccEEEccCCccccccHHHH
Confidence 78888888888887543332222 2368888888888877542 23333 36888888888888775433322
Q ss_pred C----C-CCCCCEEEccCCcCcC----CCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCc
Q 037822 402 C----K-LPALHILDLSHNNLSG----IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNN 472 (497)
Q Consensus 402 ~----~-l~~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 472 (497)
. . .++|++|++++|++++ .+|..+..+++|+.|++++|++.......+.. ........|+.|++..+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~---~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE---SVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH---HHTSTTCCCCEEECTTCC
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH---HhccCCcchhheeecccc
Confidence 2 1 5688888888888875 55666777777777777777664321111000 001122356666666665
Q ss_pred cccc
Q 037822 473 LSGE 476 (497)
Q Consensus 473 ~~~~ 476 (497)
+...
T Consensus 439 ~~~~ 442 (461)
T 1z7x_W 439 WSEE 442 (461)
T ss_dssp CCHH
T ss_pred cCHH
Confidence 5433
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1e-30 Score=244.81 Aligned_cols=248 Identities=29% Similarity=0.418 Sum_probs=215.6
Q ss_pred ccceEecccCcccc--cCChhhhcCCCCccEEEccc-CcceecccccccCcCCccEEEeecceeecccCcccccCCCCCE
Q 037822 236 NVTKLYLRDNSFSG--PIPRDFGQKIPFLTDLDISF-NSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYI 312 (497)
Q Consensus 236 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 312 (497)
+++.|+++++.+.+ .+|..+ ..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68888888888887 677665 5789999999995 8888888888999999999999999998888888999999999
Q ss_pred EECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCC-CCCEEecCCCcCcccCChhHhhhCCCCCEEEccCc
Q 037822 313 LDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 391 (497)
Q Consensus 313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n 391 (497)
|++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+.+|..+.. ++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCC
Confidence 99999999888888899999999999999999888888888888 8999999999998888877765 65 999999999
Q ss_pred ccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCC
Q 037822 392 YFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSN 471 (497)
Q Consensus 392 ~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 471 (497)
.+++..+..+..+++|+.|++++|++++..|. +..+++|+.|++++|++.. ..+..+..+++|+.|++++|
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~--------~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG--------TLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE--------CCCGGGGGCTTCCEEECCSS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC--------cCChHHhcCcCCCEEECcCC
Confidence 99888888889999999999999999866554 8888999999999998843 34455678899999999999
Q ss_pred cccccCChhhhccCCCCeEECCCCC
Q 037822 472 NLSGEMPVELTRLIHLGTLNLSRNH 496 (497)
Q Consensus 472 ~~~~~~~~~l~~l~~L~~l~l~~n~ 496 (497)
.+++.+|.. ..+++|+.+++++|+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cccccCCCC-ccccccChHHhcCCC
Confidence 999888876 889999999999997
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.5e-30 Score=241.49 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEec
Q 037822 42 NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121 (497)
Q Consensus 42 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 121 (497)
++++++++++.+. .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.+++..+. .+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEEC
Confidence 4555555555554 3443332 4555555555555544444555555555555555555543222 4555555555555
Q ss_pred cCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccc
Q 037822 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRIS 179 (497)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 179 (497)
++|.+. .++..+. ++|++|++++|++....+..+..+++|+.|++++|.+.
T Consensus 110 ~~n~l~-----~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKNHLV-----EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCC-----SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCcCC-----ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 553221 2222222 36666666667766555566777777777777777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5e-29 Score=235.69 Aligned_cols=274 Identities=20% Similarity=0.241 Sum_probs=181.0
Q ss_pred cccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEcc
Q 037822 143 KLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLS 222 (497)
Q Consensus 143 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~ 222 (497)
.+++|++++|.+....+..++.+++|+.|++++|.+.+..|..+..+ ++|++|++++|.+.
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~------------------ 113 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL-VKLERLYLSKNQLK------------------ 113 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCS------------------
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC-CCCCEEECCCCcCC------------------
Confidence 34444444555554444456666666666666666654445444433 24444444444333
Q ss_pred CCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeec--cc
Q 037822 223 SNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--EI 300 (497)
Q Consensus 223 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~ 300 (497)
.+|..+ .+.|++|++++|.+.+..+..+..+++|++|++++|.+.. ..
T Consensus 114 ---------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 114 ---------------------------ELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp ---------------------------BCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred ---------------------------ccChhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 222222 2456666666666665555566667777777777776642 45
Q ss_pred CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhC
Q 037822 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM 380 (497)
Q Consensus 301 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 380 (497)
+..+..+++|++|++++|.++. .+..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l 239 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NT 239 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GS
T ss_pred hhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CC
Confidence 5667777788888888887763 343332 6888888888888777777888888888888888888754444444 48
Q ss_pred CCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccc
Q 037822 381 PSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL 460 (497)
Q Consensus 381 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 460 (497)
++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|...... ...
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~--------------------------~~~ 292 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN--------------------------TKK 292 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC--------------------------TTS
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccc--------------------------ccc
Confidence 89999999999888 777788889999999999999987666655433211 224
Q ss_pred cccCEEEccCCcccc--cCChhhhccCCCCeEECCCCC
Q 037822 461 YLVNLMDLSSNNLSG--EMPVELTRLIHLGTLNLSRNH 496 (497)
Q Consensus 461 ~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~l~l~~n~ 496 (497)
+.++.|++++|.+.. ..|..|..++.++.+++++|+
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 567889999998853 556788899999999999885
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.7e-29 Score=235.28 Aligned_cols=244 Identities=20% Similarity=0.249 Sum_probs=118.5
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEec
Q 037822 42 NLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELAL 121 (497)
Q Consensus 42 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 121 (497)
++++++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+. .+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence 3444444444443 2333221 3444444444444433333444444444444444444432222 3444444444444
Q ss_pred cCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeecccccc--ccCchhhhcccCccEEEcc
Q 037822 122 NKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISD--TIPDWFWQLDLTLDELDVA 199 (497)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 199 (497)
++|.+. .++..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ ++|++|+++
T Consensus 108 s~n~l~-----~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~ 179 (330)
T 1xku_A 108 SKNQLK-----ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIA 179 (330)
T ss_dssp CSSCCS-----BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECC
T ss_pred CCCcCC-----ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECC
Confidence 443211 1111111 356666666666665555667777777777777776642 223333322 234444333
Q ss_pred cccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceeccccc
Q 037822 200 YNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS 279 (497)
Q Consensus 200 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 279 (497)
+|.+. .+|..+ .+.|++|++++|.+.+..+..
T Consensus 180 ~n~l~---------------------------------------------~l~~~~---~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 180 DTNIT---------------------------------------------TIPQGL---PPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp SSCCC---------------------------------------------SCCSSC---CTTCSEEECTTSCCCEECTGG
T ss_pred CCccc---------------------------------------------cCCccc---cccCCEEECCCCcCCccCHHH
Confidence 33322 122221 245555666665555555555
Q ss_pred ccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeee
Q 037822 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISG 346 (497)
Q Consensus 280 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~ 346 (497)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ ..|..+..+++|++|++++|.+++
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 555566666666666555444445555555666666665555 444445555555555555555543
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.9e-29 Score=235.86 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=152.3
Q ss_pred CCccEEEcccCcceecccccccCcCCccEEEeecceeec--ccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSG--EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ .+..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEE
Confidence 567777777777765555567777777888887777752 455666666 88888888888874 443332 688888
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcC
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNL 417 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i 417 (497)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|+++ .+|..+..+++|++|++++|++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 8998888866667888889999999999988844444444 4889999999999988 7787888899999999999999
Q ss_pred cCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc--ccCChhhhccCCCCeEECCCC
Q 037822 418 SGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS--GEMPVELTRLIHLGTLNLSRN 495 (497)
Q Consensus 418 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~l~l~~n 495 (497)
++..+..+...... ...++|+.|++++|++. +..|..|..++.|+.+++++|
T Consensus 277 ~~~~~~~~~~~~~~--------------------------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 277 TKVGVNDFCPVGFG--------------------------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBCCTTSSSCSSCC--------------------------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccChhHccccccc--------------------------cccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 87766666543211 12466788999999886 567788999999999999988
Q ss_pred C
Q 037822 496 H 496 (497)
Q Consensus 496 ~ 496 (497)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.1e-29 Score=234.70 Aligned_cols=248 Identities=29% Similarity=0.445 Sum_probs=148.8
Q ss_pred cccEEEccCCcCCC--CCCccccCCCCccEEEeec-cccccccCchhhhcccCccEEEcccccccccCCccccccCCCEE
Q 037822 143 KLTFINIRSCQLGP--KFPTWLRNQTELTTLVLNN-VRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATV 219 (497)
Q Consensus 143 ~L~~l~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l 219 (497)
++++|+++++.+.. .+|..++.+++|+.|++++ |.+.+..|..+..+ ++|++|++++|.+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEE--------------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCC--------------
Confidence 56666666666665 5666677777777777763 66665556555444 244444444444332
Q ss_pred EccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc
Q 037822 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299 (497)
Q Consensus 220 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 299 (497)
.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 116 ------------------------------~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 116 ------------------------------AIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164 (313)
T ss_dssp ------------------------------ECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred ------------------------------cCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence 233322 2455666666666666555556666666666666666666655
Q ss_pred cCcccccCC-CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822 300 IPRLWSNIS-SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE 378 (497)
Q Consensus 300 ~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 378 (497)
.|..+..++ +|++|++++|.+.+..+..+..++ |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. + .
T Consensus 165 ~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-~ 241 (313)
T 1ogq_A 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-G 241 (313)
T ss_dssp CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C-C
T ss_pred CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c-c
Confidence 666666665 666666666666655666565554 66666666666655566666666666666666666544333 2 2
Q ss_pred hCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCc
Q 037822 379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVK 440 (497)
Q Consensus 379 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~ 440 (497)
.+++|+.|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 3566666666666666666666666666666666666666655554 555555555555554
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-30 Score=267.19 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=80.0
Q ss_pred cccCCCCCCEEECCCCccc---ccCCcccc------------CCCCCCEEECcCCcCcccCCccCCC-CC-CCCEEEcCC
Q 037822 36 SLGYLKNLRYLELWHNSFV---GSIPPSIG------------NLTFLKELYLSSNQMNGKFPENFGQ-LS-AVEVLDLSE 98 (497)
Q Consensus 36 ~~~~l~~L~~L~l~~~~l~---~~~~~~l~------------~l~~L~~L~l~~n~~~~~~~~~~~~-l~-~L~~L~l~~ 98 (497)
.+..+++|++|+++++... +..|..+. .+++|++|++++|.+++..+..+.. ++ +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 4455666777776664321 11221111 5666777777766665544444433 23 377777766
Q ss_pred Cc-cccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCC----CCCccccCCCCccEEEe
Q 037822 99 NQ-WEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGP----KFPTWLRNQTELTTLVL 173 (497)
Q Consensus 99 n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----~~~~~l~~l~~L~~L~l 173 (497)
|. +..........++++|++|++++|.+.......+......+++|++|+++++.+.. .++..+..+++|+.|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 65 21111111334566666666666432211111122222344566666666665541 22333445666666666
Q ss_pred eccccccccCchhhhcccCccEEEccc
Q 037822 174 NNVRISDTIPDWFWQLDLTLDELDVAY 200 (497)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~L~~L~l~~ 200 (497)
++|.+.+ .+..+... ++|++++++.
T Consensus 228 ~~~~~~~-l~~~~~~~-~~L~~L~l~~ 252 (592)
T 3ogk_B 228 GDFEILE-LVGFFKAA-ANLEEFCGGS 252 (592)
T ss_dssp SSCBGGG-GHHHHHHC-TTCCEEEECB
T ss_pred cCccHHH-HHHHHhhh-hHHHhhcccc
Confidence 6666553 33334333 4666666654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.9e-31 Score=269.09 Aligned_cols=414 Identities=12% Similarity=0.032 Sum_probs=250.7
Q ss_pred CCCccEEEcCCCCCc---ccCCccc------------cCCCCCCEEECCCCcccccCCccccC-CCC-CCEEECcCCc-C
Q 037822 16 SSLLEKLELGFNQLN---GDLPSSL------------GYLKNLRYLELWHNSFVGSIPPSIGN-LTF-LKELYLSSNQ-M 77 (497)
Q Consensus 16 ~~~L~~L~l~~~~i~---~~~~~~~------------~~l~~L~~L~l~~~~l~~~~~~~l~~-l~~-L~~L~l~~n~-~ 77 (497)
+++|++|+++++... +..|..+ ..+++|++|++++|.+.+..+..+.. +++ |++|++++|. +
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 448999999886431 1222222 27899999999999887655555655 344 9999999987 2
Q ss_pred cc-cCCccCCCCCCCCEEEcCCCcccccc---ChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc
Q 037822 78 NG-KFPENFGQLSAVEVLDLSENQWEGII---TETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ 153 (497)
Q Consensus 78 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 153 (497)
+. ..+.....+++|++|++++|.+.+.- .......+++|++|+++++.+.......++..+..+++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 22 12222347899999999999876541 112567899999999998654311223444455677899999999988
Q ss_pred CCCCCCccccCCCCccEEEeeccccc---cccCchhhhcccCccEEEcccccccccCCccc-cccCCCEEEccCCccccC
Q 037822 154 LGPKFPTWLRNQTELTTLVLNNVRIS---DTIPDWFWQLDLTLDELDVAYNELSGSIPNSL-GFRFPATVDLSSNSFEGP 229 (497)
Q Consensus 154 ~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~~~~~ 229 (497)
+.. .+..+..+++|+.|+++.+... ...+..+... ++|+.++++++... ..+..+ .+++|+.+++++|.+.+.
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH
Confidence 764 6678889999999999864332 1122223222 57888888775433 333333 466777777777765432
Q ss_pred CC----CCccccceEecccCcccccCChhhhcCCCCccEEEccc-----------Ccceeccccc-ccCcCCccEEEeec
Q 037822 230 LP----LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISF-----------NSLNGSVSKS-ICNLQQLLTLVISN 293 (497)
Q Consensus 230 ~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~i~~~~~~~-l~~l~~L~~L~l~~ 293 (497)
.. ..+++|+.|+++ +.+.+.....+...+++|++|++++ +.+++..... ...+++|++|+++.
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 22 334577777776 3333333334445567777777773 3444322222 33467777777766
Q ss_pred ceeecccCccccc-CCCCCEEECc----cCccccc-----CCcccccccCCcEEEeecce--eeeeCCccc-ccCCCCCE
Q 037822 294 NNLSGEIPRLWSN-ISSLYILDMS----NNSLSGE-----IPESIGSLLSVRFLILCNNH--ISGEVPPSL-KNCSMMDS 360 (497)
Q Consensus 294 n~~~~~~~~~~~~-~~~L~~L~l~----~n~i~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~ 360 (497)
+.+++..+..+.. +++|+.|+++ .+.+++. .+..+..+++|++|++++|. +++..+..+ ..+++|+.
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 6665444444443 6677777775 4455432 11224556777777776543 332222222 23667777
Q ss_pred EecCCCcCcccCChhHhhhCCCCCEEEccCcccccC-CCcccCCCCCCCEEEccCCcCcCCCCccc-cCCCCCcc
Q 037822 361 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLPALHILDLSHNNLSGIIPPCV-GNFSGMKV 433 (497)
Q Consensus 361 L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~ 433 (497)
|++++|.+++.....+..++++|+.|++++|.+++. .+..+..+++|++|++++|++++.....+ ..++.++.
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 777777766544344444567777777777776532 22233456777777777777665433333 23444443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.8e-27 Score=222.58 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=172.2
Q ss_pred EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceec--ccccccCcCCccEEEeecce
Q 037822 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS--VSKSICNLQQLLTLVISNNN 295 (497)
Q Consensus 218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~n~ 295 (497)
.++++++.++..+...++++++|++++|.+. .++...+..+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 4555555555444444457888888888776 56666556788888888888887633 24556667888888888888
Q ss_pred eecccCcccccCCCCCEEECccCcccccCC-cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcc-cCC
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-NIP 373 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~ 373 (497)
+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 77 456667778888888888888875544 467777888888888888876677777778888888888887765 344
Q ss_pred hhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcc
Q 037822 374 AWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSE 453 (497)
Q Consensus 374 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 453 (497)
..+.. +++|+.|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++....+
T Consensus 169 ~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------- 240 (306)
T 2z66_A 169 DIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------- 240 (306)
T ss_dssp SCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS-------
T ss_pred hHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH-------
Confidence 44443 7788888888888876666777778888888888888876666667777777776666666543322
Q ss_pred ccccccc-cccCEEEccCCcccc
Q 037822 454 YVFYTTL-YLVNLMDLSSNNLSG 475 (497)
Q Consensus 454 ~~~~~~~-~~L~~L~l~~n~~~~ 475 (497)
..+..+ ++|+.|++++|.++.
T Consensus 241 -~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 241 -QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -SSCCCCCTTCCEEECTTCCEEC
T ss_pred -HHHHhhhccCCEEEccCCCeec
Confidence 223334 366777777776653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=232.28 Aligned_cols=245 Identities=22% Similarity=0.202 Sum_probs=147.1
Q ss_pred eEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccC
Q 037822 239 KLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNN 318 (497)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 318 (497)
.++..+..+. .+|..+ .+.++.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3444444443 444432 345566666666665555555666666666666666665444455666666666666666
Q ss_pred cccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC
Q 037822 319 SLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 398 (497)
Q Consensus 319 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 398 (497)
.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 6654444456666666666666666654445556666666666666643333454444444666666666666665 333
Q ss_pred cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCC
Q 037822 399 PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478 (497)
Q Consensus 399 ~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 478 (497)
.+..+++|++|++++|++++..|..|.++++|+.|++++|++... .+..+..+++|+.|+|++|.+++..+
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI--------ERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE--------ChhhhcCCCCCCEEECCCCCCCccCh
Confidence 355666666666666666665566666666666666666665322 22334556777778888888776666
Q ss_pred hhhhccCCCCeEECCCCCC
Q 037822 479 VELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 479 ~~l~~l~~L~~l~l~~n~i 497 (497)
..|..+++|++|+|++|++
T Consensus 273 ~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTSSCTTCCEEECCSSCE
T ss_pred hHhccccCCCEEEcCCCCc
Confidence 6777778888888887763
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.5e-27 Score=232.79 Aligned_cols=246 Identities=22% Similarity=0.194 Sum_probs=178.5
Q ss_pred ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317 (497)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 317 (497)
..++.++..++ .+|..+ .+.+++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 44555555554 455433 35677777777777776677777777777787777777766667777777788888888
Q ss_pred CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822 318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397 (497)
Q Consensus 318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 397 (497)
|.++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++...+..+++|+.|++++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 777766666677777888888888777765566777778888888877544446665555557788888888887773 3
Q ss_pred CcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccC
Q 037822 398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEM 477 (497)
Q Consensus 398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 477 (497)
+ .+..+++|++|++++|++.+..|..|.++++|+.|++++|.+... .+..+..+++|+.|+|++|.+++..
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI--------ERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE--------CTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE--------CHHHhcCCCCCCEEECCCCcCCccC
Confidence 3 467777888888888888777777788888888888888776432 2334567788888899988888777
Q ss_pred ChhhhccCCCCeEECCCCCC
Q 037822 478 PVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 478 ~~~l~~l~~L~~l~l~~n~i 497 (497)
+..|..+++|++|+|++|++
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 77788888899999988874
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=220.99 Aligned_cols=269 Identities=19% Similarity=0.191 Sum_probs=218.1
Q ss_pred CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce-
Q 037822 217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN- 295 (497)
Q Consensus 217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~- 295 (497)
..++.+++.+.......++++++|++++|.+.+ ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 345566666555544455689999999999884 444444689999999999999998888899999999999999997
Q ss_pred eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 375 (497)
+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHH
Confidence 77666788999999999999999999777888999999999999999998666667889999999999999998 55554
Q ss_pred HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV 455 (497)
Q Consensus 376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 455 (497)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.-.....
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~------- 244 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR------- 244 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-------
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-------
Confidence 4445899999999999999877889999999999999999999777777999999999999999985433221
Q ss_pred ccccccccCEEEccCCcccccCChhhhc--cCCCCeEECCCCC
Q 037822 456 FYTTLYLVNLMDLSSNNLSGEMPVELTR--LIHLGTLNLSRNH 496 (497)
Q Consensus 456 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~l~l~~n~ 496 (497)
.....++.+..+.+.+....|..+.+ +..++..++.+|+
T Consensus 245 --~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 245 --PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp --HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred --HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 11233455567778887778877765 6778888888874
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=230.24 Aligned_cols=275 Identities=18% Similarity=0.122 Sum_probs=171.6
Q ss_pred CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822 217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296 (497)
Q Consensus 217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~ 296 (497)
...+.+++.++..+....+++++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 34 ~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTCCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCcccccccccccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 33455555555444444456777777777766 34443335677777777777777766666677777777777777777
Q ss_pred ecccCcccccCCCCCEEECccCcccccCC-cccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822 297 SGEIPRLWSNISSLYILDMSNNSLSGEIP-ESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA 374 (497)
Q Consensus 297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 374 (497)
+...+..+..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 64333346677777777777777764333 35667777777777777 35545556667777777777777777655455
Q ss_pred hHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCcccc---CCCCCcccCCCCCcccccceeeeeC
Q 037822 375 WIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVG---NFSGMKVEPPDSVKYEGSLQVVLKG 451 (497)
Q Consensus 375 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~ 451 (497)
.+.. +++|+.|++++|.+.......+..+++|++|++++|.+++..+..+. ....++.++++.+.+......
T Consensus 193 ~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~---- 267 (353)
T 2z80_A 193 SLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF---- 267 (353)
T ss_dssp TTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH----
T ss_pred HHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh----
Confidence 4443 67777777777776532222234466777777777777655444332 344455555555544321110
Q ss_pred ccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 452 SEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 452 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
..+.++..+++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 1234456778888888888888844333457888888888888874
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=6.7e-30 Score=261.92 Aligned_cols=417 Identities=15% Similarity=0.082 Sum_probs=216.9
Q ss_pred cEEEcCCCCCcccCCccccCCCCCCEEECCCCccccc---CC------------ccccCCCCCCEEECcCCcCcccCCcc
Q 037822 20 EKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGS---IP------------PSIGNLTFLKELYLSSNQMNGKFPEN 84 (497)
Q Consensus 20 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~------------~~l~~l~~L~~L~l~~n~~~~~~~~~ 84 (497)
+.+++.++... .....+..+++|++|+++++..... .| .....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555554322 2223456677788888877642211 11 11235678888888888777655555
Q ss_pred CC-CCCCCCEEEcCCC-ccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc--CCC-CCC
Q 037822 85 FG-QLSAVEVLDLSEN-QWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ--LGP-KFP 159 (497)
Q Consensus 85 ~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~-~~~ 159 (497)
+. .+++|++|++++| .++.........++++|++|++++|.+.......+......+++|++|++++|. +.. .++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5778888888887 444321222455788888888887643322222233334466678888887775 111 111
Q ss_pred ccccCCCCccEEEeeccccccccCchhhhcccCccEEEccccc-------ccccCCccccccCCCEE-EccCCccccCCC
Q 037822 160 TWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNE-------LSGSIPNSLGFRFPATV-DLSSNSFEGPLP 231 (497)
Q Consensus 160 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~ 231 (497)
..+..+++|+.|++++|...+..+..+... ++|+++++..+. +.+..+....++.++.+ .+...... ..+
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hHH
Confidence 223446888888888773222244444433 578888765443 22222222345566666 23222211 111
Q ss_pred C---CccccceEecccCcccccCChhhhcCCCCccEEEcccCcceeccccc-ccCcCCccEEEeec---------ceeec
Q 037822 232 L---WSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKS-ICNLQQLLTLVISN---------NNLSG 298 (497)
Q Consensus 232 ~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-l~~l~~L~~L~l~~---------n~~~~ 298 (497)
. .+++|++|++++|.+.+.....+...+++|++|++++| +.+..... ...+++|++|++++ +.++.
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 1 23466777777666554333333446677777777766 33222222 22366677776643 22221
Q ss_pred ccCccc-ccCCCCCEEECccCcccccCCcccc-cccCCcEEEee--c----ceeeee-----CCcccccCCCCCEEecCC
Q 037822 299 EIPRLW-SNISSLYILDMSNNSLSGEIPESIG-SLLSVRFLILC--N----NHISGE-----VPPSLKNCSMMDSLDLGD 365 (497)
Q Consensus 299 ~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~ 365 (497)
.....+ ..+++|+.|.+..+.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 111111 2356666666666666544333333 35666666666 2 223210 111244566666666655
Q ss_pred CcCcccCChhHhhhCCCCCEEEccCcccccCCCccc-CCCCCCCEEEccCCcCcCCCCc-cccCCCCCcccCCCCCcc
Q 037822 366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLPALHILDLSHNNLSGIIPP-CVGNFSGMKVEPPDSVKY 441 (497)
Q Consensus 366 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~l~~~~~ 441 (497)
.+++..+..+...+++|+.|++++|.+++.....+ ..+++|++|++++|++++..+. .+..+++|+.|++++|+.
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 45544444444446666666666666654322222 4466666666666666433222 223345555555555544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=7.4e-27 Score=219.80 Aligned_cols=222 Identities=22% Similarity=0.272 Sum_probs=112.6
Q ss_pred CCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339 (497)
Q Consensus 260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 339 (497)
+.++.|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 33333444444444444444444 44444444444444444444444 33444444444444444
Q ss_pred ecceeeeeCCcccc---------cCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEE
Q 037822 340 CNNHISGEVPPSLK---------NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHIL 410 (497)
Q Consensus 340 ~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 410 (497)
++|.+.+.+|..+. .+++|++|++++|.+. .+|..+.. +++|+.|++++|+++ .+|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEE
Confidence 44444333333332 2555555555555554 44444332 555555555555554 234445555555555
Q ss_pred EccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeE
Q 037822 411 DLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 490 (497)
Q Consensus 411 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l 490 (497)
++++|.+.+.+|..+..+++|+.|++++|.....++ ..+..+++|+.|++++|.+.+.+|..+.++++|+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC--------TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc--------hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 555555554555555555555555555554432222 223455666777777777777777777777777777
Q ss_pred ECCCC
Q 037822 491 NLSRN 495 (497)
Q Consensus 491 ~l~~n 495 (497)
++..+
T Consensus 307 ~l~~~ 311 (328)
T 4fcg_A 307 LVPPH 311 (328)
T ss_dssp ECCGG
T ss_pred eCCHH
Confidence 77654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=219.91 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=107.5
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
.....+++++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 5556888888888 4555444 589999999999887666688999999999999999987777888999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccC--CCCCCccccEEEccCCc-CCCCCCccccCCCCccEEEee
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISS--HWIPPFKLTFINIRSCQ-LGPKFPTWLRNQTELTTLVLN 174 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~L~l~ 174 (497)
+|.+++ ++...+.++++|++|++++|.+. .++. .+..+++|++|++++|. +....+..++.+++|+.|+++
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-----TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp SSCCSS-CCHHHHTTCTTCSEEECTTCCCS-----SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CCcCCc-CCHhHhCCCccCCEEECCCCCCc-----ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 999886 55556888888888888875332 2222 34444455555555542 333333444444555555555
Q ss_pred ccccccccCc
Q 037822 175 NVRISDTIPD 184 (497)
Q Consensus 175 ~~~~~~~~~~ 184 (497)
+|.+.+..|.
T Consensus 183 ~n~l~~~~~~ 192 (353)
T 2z80_A 183 ASDLQSYEPK 192 (353)
T ss_dssp ETTCCEECTT
T ss_pred CCCcCccCHH
Confidence 5444433333
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.3e-26 Score=210.85 Aligned_cols=225 Identities=16% Similarity=0.140 Sum_probs=181.8
Q ss_pred ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317 (497)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 317 (497)
+.++.+++.+. .+|..+ .+.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56788888776 566543 57899999999999987778889999999999999998877788899999999999999
Q ss_pred Cc-ccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC
Q 037822 318 NS-LSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396 (497)
Q Consensus 318 n~-i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 396 (497)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence 97 77666788889999999999999998777788888999999999999988 55554444589999999999999865
Q ss_pred CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG 475 (497)
Q Consensus 397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 475 (497)
.+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--------LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--------CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc--------CCHHHcccCcccCEEeccCCCccC
Confidence 55668889999999999999988888888888888777777776643 222334566777777777776653
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.1e-26 Score=213.10 Aligned_cols=225 Identities=19% Similarity=0.210 Sum_probs=186.3
Q ss_pred cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314 (497)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 314 (497)
.+++.|++++|.+. .+|..+. .+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 36777888888777 6676664 4888999999998888 67778888899999999998888 7788888889999999
Q ss_pred CccCcccccCCccccc---------ccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCE
Q 037822 315 MSNNSLSGEIPESIGS---------LLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 385 (497)
Q Consensus 315 l~~n~i~~~~~~~l~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~ 385 (497)
+++|.+.+..|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.. +++|+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-l~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-CTTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-CCCCCE
Confidence 9988777677766544 889999999999887 77888888999999999999988 56666554 889999
Q ss_pred EEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCE
Q 037822 386 LRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNL 465 (497)
Q Consensus 386 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 465 (497)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|+.... .+..++.+++|+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--------iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR--------LPSLIAQLPANCI 305 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC--------CCGGGGGSCTTCE
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh--------ccHHHhhccCceE
Confidence 99999988888888888999999999999988888888899999999999999888544 4445678889999
Q ss_pred EEccCCccc
Q 037822 466 MDLSSNNLS 474 (497)
Q Consensus 466 L~l~~n~~~ 474 (497)
+++..+.+.
T Consensus 306 l~l~~~~~~ 314 (328)
T 4fcg_A 306 ILVPPHLQA 314 (328)
T ss_dssp EECCGGGSC
T ss_pred EeCCHHHHH
Confidence 998877665
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=7e-26 Score=211.73 Aligned_cols=145 Identities=20% Similarity=0.194 Sum_probs=78.8
Q ss_pred CCCCccEEEcccCccee-cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 258 KIPFLTDLDISFNSLNG-SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 34455555555555443 34445555566666666666665444555666666666666666666554555666666666
Q ss_pred EEeecceeeeeCCcccccCC-CCCEEecCCCcCcccCC-hhHhhhCCCCCEEEccCcccccCCCcccC
Q 037822 337 LILCNNHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIP-AWIGESMPSLSILRLRSNYFNGTIPPELC 402 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 402 (497)
|++++|.+.+..+..+..++ +|+.|++++|++..... ..+...+...+.+.+..+.+.+..|..+.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 66666666655555565553 66666666666653322 11222233344444444445444444443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=219.31 Aligned_cols=246 Identities=19% Similarity=0.118 Sum_probs=175.5
Q ss_pred CEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822 217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296 (497)
Q Consensus 217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~ 296 (497)
..++..+..+...+.....+++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 344455555544444444577777777777763333 3345778888888888888777777777888888888888887
Q ss_pred ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822 297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375 (497)
Q Consensus 297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 375 (497)
+...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+. .+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence 7555556777888888888888887666667777888888888874 444344456777888888888888777 5554
Q ss_pred HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV 455 (497)
Q Consensus 376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 455 (497)
+ ..+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+..|.++++|+.|++++|++.. ..+.
T Consensus 203 ~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~ 273 (440)
T 3zyj_A 203 L-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL--------LPHD 273 (440)
T ss_dssp C-TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC--------CCTT
T ss_pred c-CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc--------cChh
Confidence 2 237788888888888876667777888888888888888887777778888888888888887743 2333
Q ss_pred ccccccccCEEEccCCccc
Q 037822 456 FYTTLYLVNLMDLSSNNLS 474 (497)
Q Consensus 456 ~~~~~~~L~~L~l~~n~~~ 474 (497)
.+..+++|+.|+|++|++.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 4566778888888888763
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.2e-25 Score=218.80 Aligned_cols=245 Identities=17% Similarity=0.116 Sum_probs=154.7
Q ss_pred EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceee
Q 037822 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLS 297 (497)
Q Consensus 218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~ 297 (497)
.++..+..+...+...+++++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 58 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCCCCCCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 3444444444333333446667777777666433333 346677777777777776666666777777777777777766
Q ss_pred cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc-eeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822 298 GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 376 (497)
Q Consensus 298 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 376 (497)
...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+. .++. +
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~ 214 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-L 214 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-C
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-c
Confidence 555555666777777777777776555556667777777777763 343333445666777777777777766 4443 2
Q ss_pred hhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccc
Q 037822 377 GESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVF 456 (497)
Q Consensus 377 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 456 (497)
. .+++|+.|++++|++++..+..|..+++|+.|++++|++.+..+..|..+++|+.|++++|++... .+..
T Consensus 215 ~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~ 285 (452)
T 3zyi_A 215 T-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--------PHDL 285 (452)
T ss_dssp T-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--------CTTS
T ss_pred c-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--------ChHH
Confidence 2 366777777777777665566677777777777777777766666677777777777777766422 2233
Q ss_pred cccccccCEEEccCCccc
Q 037822 457 YTTLYLVNLMDLSSNNLS 474 (497)
Q Consensus 457 ~~~~~~L~~L~l~~n~~~ 474 (497)
+..+++|+.|++++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 455667777777777653
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.8e-29 Score=258.65 Aligned_cols=417 Identities=14% Similarity=0.050 Sum_probs=275.5
Q ss_pred CCCccEEEcCCCCCcc---cCC------------ccccCCCCCCEEECCCCcccccCCcccc-CCCCCCEEECcCC-cCc
Q 037822 16 SSLLEKLELGFNQLNG---DLP------------SSLGYLKNLRYLELWHNSFVGSIPPSIG-NLTFLKELYLSSN-QMN 78 (497)
Q Consensus 16 ~~~L~~L~l~~~~i~~---~~~------------~~~~~l~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~n-~~~ 78 (497)
+++|++|+++++.... ..| ..+..+++|++|++++|.+++..+..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4589999999875321 111 1134678999999999988766555564 6889999999999 455
Q ss_pred cc-CCccCCCCCCCCEEEcCCCccccccCh---hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcC
Q 037822 79 GK-FPENFGQLSAVEVLDLSENQWEGIITE---THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQL 154 (497)
Q Consensus 79 ~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 154 (497)
.. .+..+..+++|++|++++|.+++..+. .....+++|++|++++|. .......+......+++|++|++++|..
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 32 333445789999999999987653221 133467899999998864 1011111222223467899999998843
Q ss_pred CCCCCccccCCCCccEEEeecccc-------ccccCchhhhcccCccEE-EcccccccccCCccc-cccCCCEEEccCCc
Q 037822 155 GPKFPTWLRNQTELTTLVLNNVRI-------SDTIPDWFWQLDLTLDEL-DVAYNELSGSIPNSL-GFRFPATVDLSSNS 225 (497)
Q Consensus 155 ~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~-~~~~l~~l~l~~~~ 225 (497)
...++..+..+++|+.|++..+.. .+ .+..+.. +++|+.+ .+.+... +.++... .++.|+.+++++|.
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~-~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSG-CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHT-CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhc-CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC
Confidence 334667778889999999765532 11 2223333 3577777 3333322 2233222 46789999999988
Q ss_pred cccCC----CCCccccceEecccCcccccCChhhhcCCCCccEEEccc---------Ccceeccccccc-CcCCccEEEe
Q 037822 226 FEGPL----PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISF---------NSLNGSVSKSIC-NLQQLLTLVI 291 (497)
Q Consensus 226 ~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~i~~~~~~~l~-~l~~L~~L~l 291 (497)
+.+.. ...+++|+.|++++| +.+.....+...+++|++|++.+ +.+++.....+. .+++|++|.+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~ 379 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY 379 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH
Confidence 65432 124568999999988 54333444445689999999943 445543333343 4899999988
Q ss_pred ecceeecccCcccc-cCCCCCEEECc--c----CcccccC-----CcccccccCCcEEEeecceeeeeCCccccc-CCCC
Q 037822 292 SNNNLSGEIPRLWS-NISSLYILDMS--N----NSLSGEI-----PESIGSLLSVRFLILCNNHISGEVPPSLKN-CSMM 358 (497)
Q Consensus 292 ~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~i~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L 358 (497)
..+.++......+. .+++|+.|+++ + +.++... +..+..+++|++|++++ .+++..+..+.. +++|
T Consensus 380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 88887754444443 58999999999 3 4554211 12256788999999977 555444444444 8999
Q ss_pred CEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCc-ccCCCCCCCEEEccCCcCcCCCCccc-cCCCCCcccCC
Q 037822 359 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLPALHILDLSHNNLSGIIPPCV-GNFSGMKVEPP 436 (497)
Q Consensus 359 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~l 436 (497)
+.|++++|.+++..+..+..++++|+.|++++|.+++.... .+..+++|+.|++++|+++......+ ..++.++...+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999998776666656699999999999998643332 34568899999999999854433333 45566655444
Q ss_pred CC
Q 037822 437 DS 438 (497)
Q Consensus 437 ~~ 438 (497)
..
T Consensus 539 ~~ 540 (594)
T 2p1m_B 539 DE 540 (594)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.2e-26 Score=215.47 Aligned_cols=243 Identities=21% Similarity=0.239 Sum_probs=130.6
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCccee-ccccccc-------CcCCccEEEeecceeecccCccc--c
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSIC-------NLQQLLTLVISNNNLSGEIPRLW--S 305 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~~--~ 305 (497)
+++.+++++|.+ .+|..+... +++|++++|.+.. ..+..+. .+++|++|++++|.+.+..|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 445555555554 344433221 5555555555531 2222222 45555666666555554445443 5
Q ss_pred cCCCCCEEECccCcccccCCcccccc-----cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC--ChhH-h
Q 037822 306 NISSLYILDMSNNSLSGEIPESIGSL-----LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI--PAWI-G 377 (497)
Q Consensus 306 ~~~~L~~L~l~~n~i~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~-~ 377 (497)
.+++|++|++++|.+++. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+.+ +..+ +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 555566666666655543 4444444 55666666666555444455555566666666666544321 1111 1
Q ss_pred hhCCCCCEEEccCccccc--CCC-cccCCCCCCCEEEccCCcCcCCCC-ccccCCCCCcccCCCCCcccccceeeeeCcc
Q 037822 378 ESMPSLSILRLRSNYFNG--TIP-PELCKLPALHILDLSHNNLSGIIP-PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSE 453 (497)
Q Consensus 378 ~~~~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 453 (497)
..+++|+.|++++|++++ .++ ..+..+++|++|++++|++.+..| ..+..+++|+.|++++|.+.. ++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~------ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPK------ 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCS------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhh------
Confidence 235556666666665552 111 222345556666666666655443 334445566666666665541 111
Q ss_pred ccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 454 YVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 454 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
.+. ++|++|++++|.+++. |. +..+++|++|++++|+|
T Consensus 271 --~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 271 --GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp --SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred --hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 111 6778899999999865 55 88889999999999886
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=4.2e-26 Score=213.97 Aligned_cols=261 Identities=17% Similarity=0.092 Sum_probs=166.2
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+++..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56677788887776666667778899999999999987777889999999999999999885443 8889999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 177 (497)
+|.+++.. ..++|+.|++++|.+... .. ...++|++|++++|++....+..++.+++|+.|++++|.
T Consensus 89 ~n~l~~l~------~~~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 89 NNYVQELL------VGPSIETLHAANNNISRV-SC------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SSEEEEEE------ECTTCCEEECCSSCCSEE-EE------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CCcccccc------CCCCcCEEECCCCccCCc-Cc------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 99887532 347788888877654311 10 112345666666665555444455555555555555555
Q ss_pred cccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhc
Q 037822 178 ISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ 257 (497)
Q Consensus 178 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (497)
+.+..+..+....++|++|++++|.+++ . +.. .
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~--------------------------------------------~-~~~--~ 188 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYD--------------------------------------------V-KGQ--V 188 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCE--------------------------------------------E-ECC--C
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcc--------------------------------------------c-ccc--c
Confidence 5544333332222234444443333321 1 111 1
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCccc-ccCCcccccccCCcE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS-GEIPESIGSLLSVRF 336 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~ 336 (497)
.+++|++|++++|.+.+.. ..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+..+++|+.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred ccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 2566666777766666433 33666677777777777766 45666666777777777777776 445555666666777
Q ss_pred EEeecc
Q 037822 337 LILCNN 342 (497)
Q Consensus 337 L~l~~~ 342 (497)
+++.++
T Consensus 267 l~l~~~ 272 (317)
T 3o53_A 267 VAKQTV 272 (317)
T ss_dssp HHHHHH
T ss_pred EECCCc
Confidence 766644
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.9e-23 Score=211.28 Aligned_cols=268 Identities=22% Similarity=0.200 Sum_probs=151.2
Q ss_pred CCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccC
Q 037822 166 TELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDN 245 (497)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~ 245 (497)
.+++.|+++++.++ .+|..+. ++|+.|++++|.++. ++. .+++|+.|++++|.++.... .+++|+.|++++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCC
Confidence 35778888888776 5555443 477888888887763 333 45666777777776664333 5556666666666
Q ss_pred cccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCC
Q 037822 246 SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIP 325 (497)
Q Consensus 246 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 325 (497)
.+. .++. .+++|+.|++++|.++. .|. .+++|++|++++|.++ .++. .+++|+.|++++|.+++ ++
T Consensus 112 ~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 112 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC
T ss_pred cCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc
Confidence 665 2332 35566666666666653 222 1356666666666665 2332 23556666666666653 33
Q ss_pred cccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCC
Q 037822 326 ESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLP 405 (497)
Q Consensus 326 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 405 (497)
..+++|++|++++|.+++ +|.. .++|+.|++++|.+. .++. .+++|+.|++++|++++ +| ..++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred ---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCC
Confidence 334566666666666652 3322 356666666666665 4443 14566666666666653 33 3345
Q ss_pred CCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhcc
Q 037822 406 ALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL 484 (497)
Q Consensus 406 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 484 (497)
+|+.|++++|.++ .+|. .+++|+.|++++|++.. .+..+..+++|+.|+|++|.+++..|..+..+
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~---------lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR---------LPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS---------CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc---------CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 6666666666666 3333 44555555555555431 11223455555555555555555555444433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.3e-25 Score=210.12 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=181.8
Q ss_pred ccceEecccCccc-ccCChhhh------cCCCCccEEEcccCcceecccccc--cCcCCccEEEeecceeecccCccccc
Q 037822 236 NVTKLYLRDNSFS-GPIPRDFG------QKIPFLTDLDISFNSLNGSVSKSI--CNLQQLLTLVISNNNLSGEIPRLWSN 306 (497)
Q Consensus 236 ~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~ 306 (497)
.++.+++++|.+. ..++.... ..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 4777777777773 23444332 158899999999999987777766 8899999999999999855 777776
Q ss_pred C-----CCCCEEECccCcccccCCcccccccCCcEEEeecceeeee--CCccc--ccCCCCCEEecCCCcCcc--cCChh
Q 037822 307 I-----SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE--VPPSL--KNCSMMDSLDLGDNQLSG--NIPAW 375 (497)
Q Consensus 307 ~-----~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~i~~--~~~~~ 375 (497)
+ ++|++|++++|++.+..+..++.+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 8999999999999977778899999999999999987543 23333 788999999999999873 33445
Q ss_pred HhhhCCCCCEEEccCcccccCCC-cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822 376 IGESMPSLSILRLRSNYFNGTIP-PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY 454 (497)
Q Consensus 376 ~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 454 (497)
++..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+. ++|+.|++++|++... +
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~---------p 290 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN---------P 290 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC---------C
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC---------h
Confidence 55568999999999999997664 45667899999999999999 6777776 8999999999998543 1
Q ss_pred cccccccccCEEEccCCcccc
Q 037822 455 VFYTTLYLVNLMDLSSNNLSG 475 (497)
Q Consensus 455 ~~~~~~~~L~~L~l~~n~~~~ 475 (497)
. +..+++|++|++++|.+++
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTTC
T ss_pred h-HhhCCCCCEEeccCCCCCC
Confidence 2 5778999999999999985
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-25 Score=206.42 Aligned_cols=252 Identities=22% Similarity=0.157 Sum_probs=196.1
Q ss_pred EEccCCccccCC---CCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822 219 VDLSSNSFEGPL---PLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295 (497)
Q Consensus 219 l~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~ 295 (497)
.+++.+.+.... ....+++++|++++|.+.+ ++...+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 455555544322 1234589999999999984 444444689999999999999986544 8889999999999999
Q ss_pred eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChh
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAW 375 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 375 (497)
+.+ .+ ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 92 l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 873 22 348999999999999865443 3678999999999998766778888999999999999998666666
Q ss_pred HhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccc
Q 037822 376 IGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYV 455 (497)
Q Consensus 376 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 455 (497)
+...+++|+.|++++|.+++. + ....+++|++|++++|++++ +|..+..+++|+.|++++|++.. .+.
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~---------l~~ 231 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL---------IEK 231 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE---------ECT
T ss_pred HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc---------hhh
Confidence 665689999999999999854 2 34458899999999999985 45558889999999999998753 123
Q ss_pred ccccccccCEEEccCCccc-ccCChhhhccCCCCeEECC
Q 037822 456 FYTTLYLVNLMDLSSNNLS-GEMPVELTRLIHLGTLNLS 493 (497)
Q Consensus 456 ~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~l~l~ 493 (497)
.+..+++|+.|++++|.++ +..+..+..++.|+.++++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 3567889999999999887 6677778888888777665
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.3e-23 Score=208.62 Aligned_cols=258 Identities=22% Similarity=0.262 Sum_probs=127.3
Q ss_pred CCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCcc
Q 037822 115 NLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLD 194 (497)
Q Consensus 115 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 194 (497)
.++.|+++++.+ ..++..+. ++|++|++++|.+.. +|. .+++|+.|++++|.++. +|. ..++|+
T Consensus 41 ~l~~L~ls~n~L-----~~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~ 104 (622)
T 3g06_A 41 GNAVLNVGESGL-----TTLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV----LPPGLL 104 (622)
T ss_dssp CCCEEECCSSCC-----SCCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC----CCTTCC
T ss_pred CCcEEEecCCCc-----CccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC----CCCCCC
Confidence 455666655322 23333332 355555555555542 222 34555555555555542 222 113555
Q ss_pred EEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee
Q 037822 195 ELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 274 (497)
Q Consensus 195 ~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 274 (497)
+|++++|.+. +... .+.+|+.|++++|.++ .+|. .+++|++|++++|.+.+
T Consensus 105 ~L~Ls~N~l~-----------------------~l~~-~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 105 ELSIFSNPLT-----------------------HLPA-LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp EEEECSCCCC-----------------------CCCC-CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred EEECcCCcCC-----------------------CCCC-CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC
Confidence 5555555544 3222 3345555555555554 2332 23555555555555542
Q ss_pred cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822 275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354 (497)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 354 (497)
. +. .+++|+.|++++|.++ .+| ..+++|+.|++++|.+++ .+. .+++|+.|++++|.++ .+|. .
T Consensus 156 l-~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~ 219 (622)
T 3g06_A 156 L-PA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---L 219 (622)
T ss_dssp C-CC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---C
T ss_pred c-CC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---C
Confidence 2 11 2345555555555555 233 234555666666665552 221 1245556666665554 2332 1
Q ss_pred CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCccc
Q 037822 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVE 434 (497)
Q Consensus 355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 434 (497)
+++|+.|++++|.++ .+| ..+++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|
T Consensus 220 ~~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 220 PSGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp CTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 355666666666555 344 12455666666666555 3333 3455666666666665 445556666666666
Q ss_pred CCCCCcccc
Q 037822 435 PPDSVKYEG 443 (497)
Q Consensus 435 ~l~~~~~~~ 443 (497)
++++|++..
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 666665543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.8e-24 Score=194.33 Aligned_cols=198 Identities=22% Similarity=0.192 Sum_probs=100.5
Q ss_pred EccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecc
Q 037822 220 DLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE 299 (497)
Q Consensus 220 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 299 (497)
+..+..+...+...++++++|++++|.+.+. +...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCCCCCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3334333333332333566666666655532 222224455666666666665555555555556666666666655544
Q ss_pred cCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee-CCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822 300 IPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE-VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE 378 (497)
Q Consensus 300 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 378 (497)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+.
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 170 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR- 170 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh-
Confidence 445555556666666666655544444455555666666666555432 355555555666666666555532222222
Q ss_pred hCCCCC----EEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 379 SMPSLS----ILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 379 ~~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
.+++|+ .|++++|.+++..+..+ ...+|++|++++|++++.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV 215 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC
T ss_pred hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec
Confidence 233333 55555555553222222 223555555555555543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.7e-23 Score=188.59 Aligned_cols=203 Identities=19% Similarity=0.219 Sum_probs=149.1
Q ss_pred CCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822 260 PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339 (497)
Q Consensus 260 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 339 (497)
...+.++++++.++. .|..+. +++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457788888888873 444332 67888899888888655567888888899999888888666666788888888888
Q ss_pred ecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419 (497)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 419 (497)
++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 888887655666788888888888888887 4444444458888888888888885555557888888888888888887
Q ss_pred CCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccc
Q 037822 420 IIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLS 474 (497)
Q Consensus 420 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 474 (497)
..+..+..+++|+.|++++|++... .+..+..+++|+.|++++|++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence 6666677777777766666665322 2223455666666666666654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-24 Score=213.57 Aligned_cols=236 Identities=22% Similarity=0.152 Sum_probs=165.8
Q ss_pred ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL 313 (497)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 313 (497)
+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + ..++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 346777777777776433333 3577888888888888775544 77788888888888887732 2 23778888
Q ss_pred ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccc
Q 037822 314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 393 (497)
Q Consensus 314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~ 393 (497)
++++|.+++..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..++..+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 8888887755443 3567888888888887666777777888888888888887666666664578888888888888
Q ss_pred ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcc
Q 037822 394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNL 473 (497)
Q Consensus 394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 473 (497)
++. ..+..+++|+.|++++|.+++. |..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+
T Consensus 182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~---------lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL---------IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE---------ECTTCCCCTTCCEEECTTCCB
T ss_pred ccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc---------cchhhccCCCCCEEEcCCCCC
Confidence 754 2344577888888888888754 4457777888888888877642 122355677788888888877
Q ss_pred c-ccCChhhhccCCCCeEEC
Q 037822 474 S-GEMPVELTRLIHLGTLNL 492 (497)
Q Consensus 474 ~-~~~~~~l~~l~~L~~l~l 492 (497)
+ +.+|..+..++.|+.+++
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEec
Confidence 6 455566666666655554
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.9e-24 Score=194.29 Aligned_cols=229 Identities=17% Similarity=0.197 Sum_probs=184.5
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
.+..+++..+.+.+.... ..++.|++|+++++.+.. ...+..+++|++|++++|.+.+ . ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccccc---ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 455556666655533222 367889999999988863 3457788999999999998874 2 46788899999999
Q ss_pred ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCc
Confidence 999998777777888999999999999998666667888999999999999988 5555544458999999999999986
Q ss_pred CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822 396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG 475 (497)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 475 (497)
..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++. +.+++++.++++.|.+++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC---------------CCTTTTHHHHHHHHHTGG
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc---------------ccCcHHHHHHHHHHhCCC
Confidence 66666788999999999999999888878899999999999999863 457788999999999999
Q ss_pred cCChhhhccCCC
Q 037822 476 EMPVELTRLIHL 487 (497)
Q Consensus 476 ~~~~~l~~l~~L 487 (497)
.+|..++.++..
T Consensus 237 ~ip~~~~~~~~~ 248 (272)
T 3rfs_A 237 VVRNSAGSVAPD 248 (272)
T ss_dssp GBBCTTSCBCGG
T ss_pred cccCcccccCCC
Confidence 999888776543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9e-23 Score=186.74 Aligned_cols=200 Identities=21% Similarity=0.271 Sum_probs=107.4
Q ss_pred cceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECc
Q 037822 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS 316 (497)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 316 (497)
.+.++++++.++ .+|..+ .+.+++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 344444444444 333322 2445555555555554444455555555555555555553333344555556666666
Q ss_pred cCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccC
Q 037822 317 NNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 396 (497)
Q Consensus 317 ~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 396 (497)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEe
Confidence 65555444444555556666666666555444444555566666666666555 34433333355666666666665544
Q ss_pred CCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcc
Q 037822 397 IPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKY 441 (497)
Q Consensus 397 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~ 441 (497)
.+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 334455556666666666666544444555566666666666654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.6e-24 Score=210.93 Aligned_cols=236 Identities=18% Similarity=0.113 Sum_probs=136.6
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEe
Q 037822 41 KNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELA 120 (497)
Q Consensus 41 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 120 (497)
++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcCEEE
Confidence 377888888887776666777778888888888887775443 777778888888888776532 226666666
Q ss_pred ccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEccc
Q 037822 121 LNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAY 200 (497)
Q Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 200 (497)
+++|.+..... ...++|+.|++++|.+....+..++.+++|+.|++++|.+++..|..+....++|+.|++++
T Consensus 106 L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 106 AANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 66654331110 01234555666666655555555566666666666666665544444432223444444444
Q ss_pred ccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccc
Q 037822 201 NELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSI 280 (497)
Q Consensus 201 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 280 (497)
|.+++ . +.. ..++.|+.|++++|.+++..+ .+
T Consensus 179 N~l~~--------------------------------------------~-~~~--~~l~~L~~L~Ls~N~l~~~~~-~~ 210 (487)
T 3oja_A 179 NFIYD--------------------------------------------V-KGQ--VVFAKLKTLDLSSNKLAFMGP-EF 210 (487)
T ss_dssp SCCCE--------------------------------------------E-ECC--CCCTTCCEEECCSSCCCEECG-GG
T ss_pred Ccccc--------------------------------------------c-ccc--ccCCCCCEEECCCCCCCCCCH-hH
Confidence 44331 1 111 125556666666666654333 35
Q ss_pred cCcCCccEEEeecceeecccCcccccCCCCCEEECccCccc-ccCCcccccccCCcEEEee
Q 037822 281 CNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLS-GEIPESIGSLLSVRFLILC 340 (497)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~ 340 (497)
..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+..++.|+.+++.
T Consensus 211 ~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 56666666666666666 35555666666666666666665 3344445555555555554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.8e-23 Score=187.61 Aligned_cols=201 Identities=21% Similarity=0.170 Sum_probs=107.9
Q ss_pred CCCEEEccCCccccCCCCC---ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEe
Q 037822 215 FPATVDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVI 291 (497)
Q Consensus 215 ~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l 291 (497)
.++.+++++|.+.+..+.. .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 4556666666555444322 335666666666555 223222345556666666666655555555555666666666
Q ss_pred ecceeecccCcccccCCCCCEEECccCccccc-CCcccccccCCcEEEeecceeeeeCCcccccCCCCC----EEecCCC
Q 037822 292 SNNNLSGEIPRLWSNISSLYILDMSNNSLSGE-IPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD----SLDLGDN 366 (497)
Q Consensus 292 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 366 (497)
++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 66655544443455556666666666655532 245555566666666666665544444444444444 5566666
Q ss_pred cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822 367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 418 (497)
.+. .++...+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 188 ~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccc-ccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 655 33333332 335666666666655433334455566666666666655
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.7e-22 Score=186.35 Aligned_cols=200 Identities=20% Similarity=0.205 Sum_probs=117.7
Q ss_pred cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
..++++++++++++.++. .|..+ .++++.|++++|.+....+..+..+++|++|++++|.+++..+ ...+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred cccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 356667777777766653 33332 2566677777776665555566666677777777766664322 255666666
Q ss_pred EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|++++|.+. .+|..+..+++|++|++++|+++ .++...+..+++|+.|++++|++++..+..|..+++|+.|++++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 666666665 45555666666666666666666 4433333336666666666666664444455666666666666666
Q ss_pred CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCeEECCCCC
Q 037822 417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNH 496 (497)
Q Consensus 417 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~ 496 (497)
++...+..+..+++| +.|++++|.++ .+|..+..++.|+++++++|+
T Consensus 160 l~~l~~~~~~~l~~L--------------------------------~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENL--------------------------------DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTC--------------------------------CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCC--------------------------------CEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 664444444555555 55555555555 444555555556666665555
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=189.24 Aligned_cols=201 Identities=19% Similarity=0.198 Sum_probs=130.0
Q ss_pred CCCccEEEcccCcceecccccc--cCcCCccEEEeecceeecccC----cccccCCCCCEEECccCcccccCCccccccc
Q 037822 259 IPFLTDLDISFNSLNGSVSKSI--CNLQQLLTLVISNNNLSGEIP----RLWSNISSLYILDMSNNSLSGEIPESIGSLL 332 (497)
Q Consensus 259 ~~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 332 (497)
.+.|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777777776666665 667777777777777664333 2234567777777777777666666677777
Q ss_pred CCcEEEeecceeeee----CCcccccCCCCCEEecCCCcCcccCCh---hHhhhCCCCCEEEccCcccccCCCcccCCC-
Q 037822 333 SVRFLILCNNHISGE----VPPSLKNCSMMDSLDLGDNQLSGNIPA---WIGESMPSLSILRLRSNYFNGTIPPELCKL- 404 (497)
Q Consensus 333 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l- 404 (497)
+|++|++++|.+.+. .+..+..+++|++|++++|.++ .++. .++..+++|+.|++++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765421 1223356677777777777775 3332 233446777777777777776556555554
Q ss_pred --CCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhh
Q 037822 405 --PALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELT 482 (497)
Q Consensus 405 --~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 482 (497)
++|++|++++|+++ .+|..+. ++|++|++++|.+++. |. +.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~----------------------------------~~L~~L~Ls~N~l~~~-~~-~~ 291 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP----------------------------------AKLRVLDLSSNRLNRA-PQ-PD 291 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC----------------------------------SCCSCEECCSCCCCSC-CC-TT
T ss_pred CcCcCCEEECCCCCCC-chhhhhc----------------------------------CCCCEEECCCCcCCCC-ch-hh
Confidence 57777777777777 4444331 4556677777777743 32 56
Q ss_pred ccCCCCeEECCCCCC
Q 037822 483 RLIHLGTLNLSRNHL 497 (497)
Q Consensus 483 ~l~~L~~l~l~~n~i 497 (497)
.+++|++|++++|+|
T Consensus 292 ~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 292 ELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSCEECSSTTT
T ss_pred hCCCccEEECcCCCC
Confidence 777888888888775
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.6e-21 Score=179.80 Aligned_cols=201 Identities=23% Similarity=0.212 Sum_probs=146.8
Q ss_pred ccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee
Q 037822 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292 (497)
Q Consensus 213 ~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 292 (497)
++.++.++++++.++...+..+++++.|++++|.+.+..+.. +..+++|++|++++|.+++..+. ..+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 344555555555555444444557778888888776443333 35678888888888888754332 677888888888
Q ss_pred cceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC
Q 037822 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 372 (497)
Q Consensus 293 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 372 (497)
+|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++. .+
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-cc
Confidence 88877 66777777888888888888888666677888888888888888887555566777888888888888887 66
Q ss_pred ChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822 373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419 (497)
Q Consensus 373 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 419 (497)
+...+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 6666556788888888888887 667777777788888888887763
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-23 Score=201.10 Aligned_cols=259 Identities=19% Similarity=0.149 Sum_probs=152.1
Q ss_pred EEccCCccccCCCCC---ccccceEecccCcccccCCh---hhhcCCC-CccEEEcccCcceecccccccCc-----CCc
Q 037822 219 VDLSSNSFEGPLPLW---SFNVTKLYLRDNSFSGPIPR---DFGQKIP-FLTDLDISFNSLNGSVSKSICNL-----QQL 286 (497)
Q Consensus 219 l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~i~~~~~~~l~~l-----~~L 286 (497)
..++.+.+++..|.. ..++++|++++|.+.+..+. ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 456666666554432 23577788888777643331 2224556 77788888877776656555554 777
Q ss_pred cEEEeecceeecccCcc----cccC-CCCCEEECccCcccccCCcccc----c-ccCCcEEEeecceeeeeC----Cccc
Q 037822 287 LTLVISNNNLSGEIPRL----WSNI-SSLYILDMSNNSLSGEIPESIG----S-LLSVRFLILCNNHISGEV----PPSL 352 (497)
Q Consensus 287 ~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~i~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~----~~~~ 352 (497)
++|++++|.++...+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 78888777776444432 3333 6777888887777655444332 2 257777777777776332 2233
Q ss_pred ccCC-CCCEEecCCCcCcccCChhHhh---hC-CCCCEEEccCcccccC----CCcccCC-CCCCCEEEccCCcCcCCCC
Q 037822 353 KNCS-MMDSLDLGDNQLSGNIPAWIGE---SM-PSLSILRLRSNYFNGT----IPPELCK-LPALHILDLSHNNLSGIIP 422 (497)
Q Consensus 353 ~~~~-~L~~L~l~~~~i~~~~~~~~~~---~~-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~i~~~~~ 422 (497)
..++ +|++|++++|.+++..+..+.. .+ ++|+.|++++|.+++. ++..+.. .++|++|++++|++++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 7777777777776554443332 13 4777777777777642 2333433 3477777777777775543
Q ss_pred ----ccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCC
Q 037822 423 ----PCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMP 478 (497)
Q Consensus 423 ----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 478 (497)
..+..+++|+.|++++|.+........ ......+..+++|+.||+++|.+....+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-KALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHH-HHHHHHhccCCceEEEecCCCcCCCcch
Confidence 234556667777766666322221111 1112233456666667777776665443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.3e-21 Score=175.61 Aligned_cols=181 Identities=18% Similarity=0.258 Sum_probs=124.3
Q ss_pred cccceEecccCcccccCChhhhcCCCCccEEEcccCc-ceecccccccCcCCccEEEeec-ceeecccCcccccCCCCCE
Q 037822 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNS-LNGSVSKSICNLQQLLTLVISN-NNLSGEIPRLWSNISSLYI 312 (497)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~ 312 (497)
.+++.|++++|++. .++...+..+++|++|++++|. ++...+..+..+++|++|++++ |.+....+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 36777777777776 3444334567777777777775 6666666777777777777777 7776555566777777777
Q ss_pred EECccCcccccCCcccccccCCc---EEEeecc-eeeeeCCcccccCCCCC-EEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822 313 LDMSNNSLSGEIPESIGSLLSVR---FLILCNN-HISGEVPPSLKNCSMMD-SLDLGDNQLSGNIPAWIGESMPSLSILR 387 (497)
Q Consensus 313 L~l~~n~i~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 387 (497)
|++++|.+++ .+. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.+. .++...+.. ++|+.|+
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEE
Confidence 7777777764 343 66666666 7777777 77655555677777777 7777777776 666655553 6777777
Q ss_pred ccCcc-cccCCCcccCCC-CCCCEEEccCCcCcCC
Q 037822 388 LRSNY-FNGTIPPELCKL-PALHILDLSHNNLSGI 420 (497)
Q Consensus 388 l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~i~~~ 420 (497)
+++|+ +++..+..|..+ ++|+.|++++|+++..
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 77774 664445566777 7777777777777743
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.4e-23 Score=198.02 Aligned_cols=265 Identities=16% Similarity=0.161 Sum_probs=148.4
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCC----ccccCCC-CCCEEECcCCcCcccCCccCCCC-----CC
Q 037822 21 KLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIP----PSIGNLT-FLKELYLSSNQMNGKFPENFGQL-----SA 90 (497)
Q Consensus 21 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~ 90 (497)
++.++.+.+++..|..+...++|++|++++|.+.+..+ .++..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 56788888888777766777779999999999886655 6778888 89999999999887666666654 88
Q ss_pred CCEEEcCCCccccccCh---hhhhcC-CCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCC
Q 037822 91 VEVLDLSENQWEGIITE---THFRNL-SNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQT 166 (497)
Q Consensus 91 L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~ 166 (497)
|++|++++|.+++..+. ..+..+ ++|++|++++|.+.......+...+... .+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-----------------------~~ 138 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL-----------------------PA 138 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS-----------------------CT
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC-----------------------CC
Confidence 99999999988764332 123344 6677777766544322111111222221 23
Q ss_pred CccEEEeeccccccccCchh----hhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEec
Q 037822 167 ELTTLVLNNVRISDTIPDWF----WQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYL 242 (497)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l 242 (497)
+|++|++++|.+.+..+..+ ....++|++|++++|.+++..+..+... .....++|+.|++
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------l~~~~~~L~~L~L 203 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF---------------LASIPASVTSLDL 203 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH---------------HHTSCTTCCEEEC
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH---------------HHhCCCCCCEEEC
Confidence 55555555555543332222 1221255555555555543322211000 0000012333333
Q ss_pred ccCccccc----CChhhhcCCCCccEEEcccCcceeccc----ccccCcCCccEEEeecceeec-------ccCcccccC
Q 037822 243 RDNSFSGP----IPRDFGQKIPFLTDLDISFNSLNGSVS----KSICNLQQLLTLVISNNNLSG-------EIPRLWSNI 307 (497)
Q Consensus 243 ~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~l~~n~~~~-------~~~~~~~~~ 307 (497)
++|.+.+. ++..+....+.|++|++++|.+++..+ ..+..+++|++|++++|.+.. ..+..+..+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 33333321 222332234567777777777765433 233456677777777776331 122344556
Q ss_pred CCCCEEECccCccccc
Q 037822 308 SSLYILDMSNNSLSGE 323 (497)
Q Consensus 308 ~~L~~L~l~~n~i~~~ 323 (497)
++|++|++++|.+...
T Consensus 284 ~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 284 QKIILVDKNGKEIHPS 299 (362)
T ss_dssp CEEEEECTTSCBCCGG
T ss_pred CceEEEecCCCcCCCc
Confidence 6666777777766543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2e-21 Score=174.48 Aligned_cols=199 Identities=22% Similarity=0.275 Sum_probs=146.0
Q ss_pred CCCccEEEcccCcceecccccccCcCCccEEEeecce-eecccCcccccCCCCCEEECcc-CcccccCCcccccccCCcE
Q 037822 259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN-LSGEIPRLWSNISSLYILDMSN-NSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~l~~~~~L~~ 336 (497)
.+.+++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3478888898888887777788888888888888886 7755556788888888888888 8888666677888888888
Q ss_pred EEeecceeeeeCCcccccCCCCC---EEecCCC-cCcccCChhHhhhCCCCC-EEEccCcccccCCCc-ccCCCCCCCEE
Q 037822 337 LILCNNHISGEVPPSLKNCSMMD---SLDLGDN-QLSGNIPAWIGESMPSLS-ILRLRSNYFNGTIPP-ELCKLPALHIL 410 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~-~l~~l~~L~~L 410 (497)
|++++|.+.+ +|. +..+++|+ .|++++| .+. .++...+..+++|+ .|++++|+++ .++. .+.. ++|++|
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence 8888888874 554 77777777 8888888 776 55554444578888 8888888877 4443 3444 778888
Q ss_pred EccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCCCCe
Q 037822 411 DLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIHLGT 489 (497)
Q Consensus 411 ~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 489 (497)
++++|+ +.+..+..+..+ .++|+.|++++|.+++. |.. .+++|+.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l-------------------------------~~~L~~L~l~~N~l~~l-~~~--~~~~L~~ 230 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGV-------------------------------YSGPSLLDVSQTSVTAL-PSK--GLEHLKE 230 (239)
T ss_dssp ECTTCTTCCEECTTTTTTC-------------------------------SBCCSEEECTTCCCCCC-CCT--TCTTCSE
T ss_pred EcCCCCCcccCCHHHhhcc-------------------------------ccCCcEEECCCCccccC-Chh--HhccCce
Confidence 888884 765545545444 04557788888888744 432 6778888
Q ss_pred EECCCCC
Q 037822 490 LNLSRNH 496 (497)
Q Consensus 490 l~l~~n~ 496 (497)
|+++++.
T Consensus 231 L~l~~~~ 237 (239)
T 2xwt_C 231 LIARNTW 237 (239)
T ss_dssp EECTTC-
T ss_pred eeccCcc
Confidence 8888764
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.9e-21 Score=178.08 Aligned_cols=203 Identities=17% Similarity=0.210 Sum_probs=160.9
Q ss_pred CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEE
Q 037822 259 IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLI 338 (497)
Q Consensus 259 ~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~ 338 (497)
+..+..+++..+.+.+. .....+++|+.|++++|.+. .. ..+..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34555666666666433 34667899999999999887 33 3578899999999999998743 4788899999999
Q ss_pred eecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822 339 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 339 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 418 (497)
+++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|++++|+++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 9999998767777889999999999999998 555544445899999999999998666666789999999999999999
Q ss_pred CCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCccccc
Q 037822 419 GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGE 476 (497)
Q Consensus 419 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 476 (497)
+..+..+..+++|+.|++++|++.. ..+..+..+++|+.|++++|.+...
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKS--------VPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhcCCccCCEEECCCCcCCc--------cCHHHHhCCcCCCEEEccCCCcccc
Confidence 7777778888888888888887743 2333456778888888888877643
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.5e-23 Score=194.88 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=150.9
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceec-ccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS-VSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 314 (497)
+++.+++++|.+.+..+. + ..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 555566666655544333 2 2567777777777776644 555667777777888777777656666677777788888
Q ss_pred CccC-ccccc-CCcccccccCCcEEEeecc-eeeee-CCcccccCC-CCCEEecCCC--cCcc-cCChhHhhhCCCCCEE
Q 037822 315 MSNN-SLSGE-IPESIGSLLSVRFLILCNN-HISGE-VPPSLKNCS-MMDSLDLGDN--QLSG-NIPAWIGESMPSLSIL 386 (497)
Q Consensus 315 l~~n-~i~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~--~i~~-~~~~~~~~~~~~L~~L 386 (497)
+++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .+++ .++..+ ..+++|+.|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-hhCCCCCEE
Confidence 8777 55532 3445666777888888877 66533 345566777 8888888887 4442 333333 347888888
Q ss_pred EccCcc-cccCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccc-ccc
Q 037822 387 RLRSNY-FNGTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTL-YLV 463 (497)
Q Consensus 387 ~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~L 463 (497)
++++|. +++..+..+..+++|++|++++|. +.......+.++++|+.|++++| +... .+..+ ..+
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~-----------~~~~l~~~l 295 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG-----------TLQLLKEAL 295 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT-----------CHHHHHHHS
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH-----------HHHHHHhhC
Confidence 888887 555556667777888888888874 32222235677788888888877 2110 11222 346
Q ss_pred CEEEccCCcccccCChhhhc
Q 037822 464 NLMDLSSNNLSGEMPVELTR 483 (497)
Q Consensus 464 ~~L~l~~n~~~~~~~~~l~~ 483 (497)
+.|++++|.+++..|..+..
T Consensus 296 ~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 296 PHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTSEESCCCSCCTTCSSCSS
T ss_pred cceEEecccCccccCCcccc
Confidence 66778888888777766553
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-22 Score=193.00 Aligned_cols=246 Identities=14% Similarity=0.109 Sum_probs=190.6
Q ss_pred ccceEecccCcccccCChhhhcCC--CCccEEEcccCcceecccccccCcCCccEEEeecceeecc-cCcccccCCCCCE
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKI--PFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGE-IPRLWSNISSLYI 312 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~ 312 (497)
..+.++++++.+.. .....+ +.++.+++++|.+.+..+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35667777766542 222344 8999999999999866554 56789999999999998754 7777889999999
Q ss_pred EECccCcccccCCcccccccCCcEEEeecc-eeeee-CCcccccCCCCCEEecCCC-cCcccCChhHhhhCC-CCCEEEc
Q 037822 313 LDMSNNSLSGEIPESIGSLLSVRFLILCNN-HISGE-VPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESMP-SLSILRL 388 (497)
Q Consensus 313 L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~-~L~~L~l 388 (497)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++.........++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998777888889999999999999 56642 5566788999999999999 888643233344589 9999999
Q ss_pred cCc--ccc-cCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccC
Q 037822 389 RSN--YFN-GTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVN 464 (497)
Q Consensus 389 ~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 464 (497)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|..... .....+..+++|+
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------~~~~~l~~~~~L~ 275 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-------ETLLELGEIPTLK 275 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------GGGGGGGGCTTCC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------HHHHHHhcCCCCC
Confidence 999 454 3455667789999999999999 7777788999999999999999962211 1113457799999
Q ss_pred EEEccCCcccccCChhhhcc-CCCCeEECCCCCC
Q 037822 465 LMDLSSNNLSGEMPVELTRL-IHLGTLNLSRNHL 497 (497)
Q Consensus 465 ~L~l~~n~~~~~~~~~l~~l-~~L~~l~l~~n~i 497 (497)
+|++++| ++.. .+..+ ..+..|++++|++
T Consensus 276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp EEECTTS-SCTT---CHHHHHHHSTTSEESCCCS
T ss_pred EEeccCc-cCHH---HHHHHHhhCcceEEecccC
Confidence 9999999 5433 34444 3466777888864
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=9.1e-21 Score=171.39 Aligned_cols=165 Identities=23% Similarity=0.269 Sum_probs=95.6
Q ss_pred CccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEee
Q 037822 261 FLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340 (497)
Q Consensus 261 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 340 (497)
..++++++++.+. ..|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 2333332 456666666666665555556666666666666666665555556666666666666
Q ss_pred cceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
+|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++..+..|..+++|++|++++|++.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 66666444455566666666666666665 44443333456666666666666544334555666666666666666644
Q ss_pred CCccccCCC
Q 037822 421 IPPCVGNFS 429 (497)
Q Consensus 421 ~~~~l~~l~ 429 (497)
.+..+..++
T Consensus 171 ~~~~~~~l~ 179 (251)
T 3m19_A 171 PHGAFDRLG 179 (251)
T ss_dssp CTTTTTTCT
T ss_pred CHHHHhCCC
Confidence 444444333
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.8e-23 Score=199.73 Aligned_cols=236 Identities=15% Similarity=0.173 Sum_probs=133.3
Q ss_pred CCCCccEEEcccCcceecccc----cccCcCCccEEEeeccee---ecccCccc-------ccCCCCCEEECccCcccc-
Q 037822 258 KIPFLTDLDISFNSLNGSVSK----SICNLQQLLTLVISNNNL---SGEIPRLW-------SNISSLYILDMSNNSLSG- 322 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~~n~~---~~~~~~~~-------~~~~~L~~L~l~~n~i~~- 322 (497)
.++.|++|++++|.+....+. .+..+++|++|++++|.+ .+..|..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 456666666666666544332 244566666666666432 22223222 456667777777766664
Q ss_pred ---cCCcccccccCCcEEEeecceeeeeCCcc----cccC---------CCCCEEecCCCcCccc-CCh--hHhhhCCCC
Q 037822 323 ---EIPESIGSLLSVRFLILCNNHISGEVPPS----LKNC---------SMMDSLDLGDNQLSGN-IPA--WIGESMPSL 383 (497)
Q Consensus 323 ---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~i~~~-~~~--~~~~~~~~L 383 (497)
..+..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.+.+. ++. .....+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 23445566666777777776664322222 2223 6777777777766522 221 122236677
Q ss_pred CEEEccCccccc-----CCCcccCCCCCCCEEEccCCcCc----CCCCccccCCCCCcccCCCCCcccccceeeeeCccc
Q 037822 384 SILRLRSNYFNG-----TIPPELCKLPALHILDLSHNNLS----GIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEY 454 (497)
Q Consensus 384 ~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 454 (497)
+.|++++|+++. ..+..+..+++|++|++++|.++ ..+|..+..+++|+.|++++|.+....... .+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~----l~ 265 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA----VV 265 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH----HH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH----HH
Confidence 777777776652 12225566667777777777764 345556666777777777777654321110 11
Q ss_pred ccc--ccccccCEEEccCCcccc----cCChhh-hccCCCCeEECCCCCC
Q 037822 455 VFY--TTLYLVNLMDLSSNNLSG----EMPVEL-TRLIHLGTLNLSRNHL 497 (497)
Q Consensus 455 ~~~--~~~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~l~l~~n~i 497 (497)
..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|+|
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 122 236677777777777765 355555 4567777777777764
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.6e-23 Score=202.32 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=69.3
Q ss_pred CCCCccEEEcccCcceec-----ccccccCcCCccEEEeecceee----cccCcccccCCCCCEEECccCccccc----C
Q 037822 258 KIPFLTDLDISFNSLNGS-----VSKSICNLQQLLTLVISNNNLS----GEIPRLWSNISSLYILDMSNNSLSGE----I 324 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~-----~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~i~~~----~ 324 (497)
.++.|++|++++|.+... .+..+..+++|++|++++|.++ ..++..+..+++|++|++++|.+++. .
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 455666666666665521 2224556666666666666663 34455556666666666666666543 2
Q ss_pred Ccccc--cccCCcEEEeecceeee----eCCccc-ccCCCCCEEecCCCcCcccCC--hhHhhhCCCCCEEEc
Q 037822 325 PESIG--SLLSVRFLILCNNHISG----EVPPSL-KNCSMMDSLDLGDNQLSGNIP--AWIGESMPSLSILRL 388 (497)
Q Consensus 325 ~~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~~L~~L~l 388 (497)
+..+. .+++|++|++++|.++. .++..+ ..+++|+.|++++|.+.+..+ ..+...++.++.+++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 23332 25556666666666553 244444 345666666666666554432 333333444443333
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.8e-20 Score=168.16 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=148.1
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
..+.++++++.+. .+|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777766 566543 367888899988888777778888899999999999988777777888999999999
Q ss_pred ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCc
Confidence 999998777777888999999999999998666666788999999999999998 5555444458999999999999987
Q ss_pred CCCcccCCCCCCCEEEccCCcCcCC
Q 037822 396 TIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666888999999999999999855
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.9e-21 Score=177.89 Aligned_cols=194 Identities=20% Similarity=0.307 Sum_probs=162.2
Q ss_pred cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
..+++|++|++++|.+... + .+..+++|++|++++|.+.. .+. +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3588999999999998753 3 68889999999999999984 444 88999999999999999843 36888999999
Q ss_pred EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|++++|.+.+ .+ .+..+++|++|++++|.+. .++. + ..+++|+.|++++|++++ ++. +..+++|++|++++|+
T Consensus 112 L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQITD-VT-PLAGLSNLQVLYLDLNQIT-NISP-L-AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG-G-GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-cCcc-c-cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 9999999974 33 4889999999999999998 4443 3 348999999999999984 443 8899999999999999
Q ss_pred CcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822 417 LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG 475 (497)
Q Consensus 417 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 475 (497)
+.+..+ +..+++|+.|++++|++....+ +..+++|+.|++++|.+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~----------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP----------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG----------GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc----------ccCCCCCCEEEccCCeeec
Confidence 986543 8899999999999998854331 4778999999999999975
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=179.81 Aligned_cols=228 Identities=18% Similarity=0.133 Sum_probs=161.5
Q ss_pred CccEEEcCCCCCcccCCc---cccCCCCCCEEECCCCcccccCCccc--cCCCCCCEEECcCCcCcccCC----ccCCCC
Q 037822 18 LLEKLELGFNQLNGDLPS---SLGYLKNLRYLELWHNSFVGSIPPSI--GNLTFLKELYLSSNQMNGKFP----ENFGQL 88 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~l 88 (497)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 477788887776532111 12345678888888888887777777 788888888888888875433 334578
Q ss_pred CCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCc----cccC
Q 037822 89 SAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPT----WLRN 164 (497)
Q Consensus 89 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~----~l~~ 164 (497)
++|++|++++|.+.+..+. .+..+++|++|++++|.+...........+..+++|++|++++|++.. .+. .++.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 8888888888888764443 778888888888888653211111112233567788888888888753 222 2467
Q ss_pred CCCccEEEeeccccccccCchhhhcc--cCccEEEcccccccccCCccccccCCCEEEccCCccccC-CCCCccccceEe
Q 037822 165 QTELTTLVLNNVRISDTIPDWFWQLD--LTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGP-LPLWSFNVTKLY 241 (497)
Q Consensus 165 l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~L~~L~ 241 (497)
+++|++|++++|.+.+..|..+.... ++|++|++++|.++ .+|..+. ++|+.+++++|.+++. .+..+++|+.|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 78899999999988877676665542 58899999999888 4555443 7889999999988873 455677999999
Q ss_pred cccCcccc
Q 037822 242 LRDNSFSG 249 (497)
Q Consensus 242 l~~~~~~~ 249 (497)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 99998863
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=9e-20 Score=169.88 Aligned_cols=192 Identities=20% Similarity=0.285 Sum_probs=163.3
Q ss_pred ccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEE
Q 037822 234 SFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYIL 313 (497)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 313 (497)
+++++.|++++|.+. .++ . ...+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~-~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCcc-Cch-h-hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 569999999999987 444 2 3579999999999999986544 8899999999999999874 3 468899999999
Q ss_pred ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccc
Q 037822 314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 393 (497)
Q Consensus 314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~ 393 (497)
++++|.+++. + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+. .++. ...+++|+.|++++|++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-c-cccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCcc
Confidence 9999999854 3 388999999999999999743 3 3889999999999999998 4544 34599999999999999
Q ss_pred ccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccc
Q 037822 394 NGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEG 443 (497)
Q Consensus 394 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~ 443 (497)
++. + .+..+++|++|++++|++.+.. .+..+++|+.|++++|++..
T Consensus 186 ~~~-~-~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcC-h-hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 853 3 3889999999999999999665 38999999999999999855
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.3e-19 Score=170.45 Aligned_cols=238 Identities=18% Similarity=0.100 Sum_probs=167.2
Q ss_pred EEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCccee-cccccccCcCCccE-EEeecce
Q 037822 218 TVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVSKSICNLQQLLT-LVISNNN 295 (497)
Q Consensus 218 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~l~~l~~L~~-L~l~~n~ 295 (497)
.++.+++.++..+...+.++++|++++|+++ .++...+..+++|++|++++|.+.+ ..+.+|.+++++++ +.+..|+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3455555555443333457888888888887 6666666788899999999988754 34456778888775 4555677
Q ss_pred eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeec-ceeeeeCCcccccCC-CCCEEecCCCcCcccCC
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCN-NHISGEVPPSLKNCS-MMDSLDLGDNQLSGNIP 373 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~ 373 (497)
+....+..|..+++|++|++++|++....+..+.....+..+++.+ +.+....+..|..++ .++.|++++|++. .++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCC
Confidence 8766678888889999999999988866666666677788888866 456544455566554 6888999999888 677
Q ss_pred hhHhhhCCCCCEEEccC-cccccCCC-cccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeC
Q 037822 374 AWIGESMPSLSILRLRS-NYFNGTIP-PELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKG 451 (497)
Q Consensus 374 ~~~~~~~~~L~~L~l~~-n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 451 (497)
...+. .++|+++++.+ |.++ .+| ..|..+++|++|++++|+++...+..+.++++|+.++....+ .++.
T Consensus 171 ~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~---~lP~---- 241 (350)
T 4ay9_X 171 NSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT---- 241 (350)
T ss_dssp TTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCC---CCCC----
T ss_pred hhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcC---cCCC----
Confidence 66665 67888888875 4555 554 467888999999999999886655556666666555543322 2221
Q ss_pred ccccccccccccCEEEccCC
Q 037822 452 SEYVFYTTLYLVNLMDLSSN 471 (497)
Q Consensus 452 ~~~~~~~~~~~L~~L~l~~n 471 (497)
+..+++|+.++++++
T Consensus 242 -----l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 -----LEKLVALMEASLTYP 256 (350)
T ss_dssp -----TTTCCSCCEEECSCH
T ss_pred -----chhCcChhhCcCCCC
Confidence 356778888888764
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.5e-19 Score=170.28 Aligned_cols=242 Identities=19% Similarity=0.168 Sum_probs=188.9
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccC-cccccCCCCCE-E
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIP-RLWSNISSLYI-L 313 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~-L 313 (497)
.-+.++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|++++|.+.+.++ .+|.+++++++ +
T Consensus 10 ~~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 10 SNRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp ETTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred eCCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4467888888888 778765 5689999999999997777889999999999999999764444 56888888876 5
Q ss_pred ECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC-cCcccCChhHhhhC-CCCCEEEccCc
Q 037822 314 DMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESM-PSLSILRLRSN 391 (497)
Q Consensus 314 ~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~-~~L~~L~l~~n 391 (497)
.+.+|+++...+..|..+++|++|++++|.+....+..+....++..+++.++ .+. .++...+..+ ..++.|++++|
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSS
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccc
Confidence 56678999888889999999999999999998655556667778889999764 565 6665444434 46899999999
Q ss_pred ccccCCCcccCCCCCCCEEEccC-CcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccC
Q 037822 392 YFNGTIPPELCKLPALHILDLSH-NNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSS 470 (497)
Q Consensus 392 ~~~~~~~~~l~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 470 (497)
+++ .++.......+|+++++++ |.+....++.|..+++|+.|++++|++..... ..+.+|+.|.+.+
T Consensus 165 ~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----------~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 165 GIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----------YGLENLKKLRARS 232 (350)
T ss_dssp CCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----------SSCTTCCEEECTT
T ss_pred ccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----------hhhccchHhhhcc
Confidence 998 4555555667899999986 56775555678999999999999999854322 2366777887766
Q ss_pred CcccccCChhhhccCCCCeEECCCC
Q 037822 471 NNLSGEMPVELTRLIHLGTLNLSRN 495 (497)
Q Consensus 471 n~~~~~~~~~l~~l~~L~~l~l~~n 495 (497)
+.--...| .+..+++|+.++++++
T Consensus 233 ~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 233 TYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCCcCcCC-CchhCcChhhCcCCCC
Confidence 64333555 3889999999999753
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.6e-19 Score=158.29 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=83.6
Q ss_pred CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEc
Q 037822 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL 388 (497)
Q Consensus 309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 388 (497)
++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 4444444444444333333444445555555555444333333444555555555555554 333332223555555555
Q ss_pred cCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEc
Q 037822 389 RSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDL 468 (497)
Q Consensus 389 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 468 (497)
++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++. +.+++|+.|++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~L~~ 172 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSE 172 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------------CCTTTTHHHHH
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------------cCCCCHHHHHH
Confidence 555555333333455555555555555555444444555555555555555432 33556677777
Q ss_pred cCCcccccCChhhhccCC
Q 037822 469 SSNNLSGEMPVELTRLIH 486 (497)
Q Consensus 469 ~~n~~~~~~~~~l~~l~~ 486 (497)
+.|.+++.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 888887777777766654
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5e-19 Score=155.13 Aligned_cols=181 Identities=22% Similarity=0.270 Sum_probs=130.1
Q ss_pred ceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECcc
Q 037822 238 TKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSN 317 (497)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 317 (497)
+.++.+++.++ .+|.. ..+++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34444444444 34433 245677777777777766666677778888888888877755555667788888888888
Q ss_pred CcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCC
Q 037822 318 NSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 397 (497)
Q Consensus 318 n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 397 (497)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec--
Confidence 8887666666777888888888888887555556777888888888888887 4555444457888888888887653
Q ss_pred CcccCCCCCCCEEEccCCcCcCCCCccccCCCC
Q 037822 398 PPELCKLPALHILDLSHNNLSGIIPPCVGNFSG 430 (497)
Q Consensus 398 ~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~ 430 (497)
.+++|+.|+++.|++++.+|.+++.++.
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 3567888888888888888887776654
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.9e-18 Score=163.51 Aligned_cols=128 Identities=25% Similarity=0.299 Sum_probs=63.0
Q ss_pred EEEeecceeecccCcccccCCCCCEEECccCcccccCCcccc-cccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822 288 TLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIG-SLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366 (497)
Q Consensus 288 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 366 (497)
.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4444444444 3333221 3345555555555544444444 4555555555555555444444555555555555555
Q ss_pred cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcC
Q 037822 367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSG 419 (497)
Q Consensus 367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~ 419 (497)
.+. .++...+..+++|+.|++++|++++..+..|..+++|++|+|++|++.+
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 554 3333333335555555555555554444455555555555555555553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.4e-17 Score=166.38 Aligned_cols=189 Identities=25% Similarity=0.308 Sum_probs=102.7
Q ss_pred CccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEee
Q 037822 261 FLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILC 340 (497)
Q Consensus 261 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~ 340 (497)
+++.|++++|.+++ .|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 23222 245555555555555 343 234555666666665553 333 332 56666666
Q ss_pred cceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 341 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 341 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
+|.+++ +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|++++ +|. |. ++|+.|++++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 665553 333 3556666666666665 3443 25566666666666653 444 33 56666666666666 3
Q ss_pred CCccccCCCCC-------cccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccccCChhhhccCC
Q 037822 421 IPPCVGNFSGM-------KVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRLIH 486 (497)
Q Consensus 421 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 486 (497)
+|. +.. +| +.|++++|++.. .+..+..+++|+.|+|++|.+++.+|..|..++.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~---------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH---------IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC---------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee---------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 343 332 44 555555555531 1122334677788999999998888888777643
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.2e-17 Score=147.41 Aligned_cols=152 Identities=19% Similarity=0.249 Sum_probs=74.4
Q ss_pred cEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecc
Q 037822 263 TDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNN 342 (497)
Q Consensus 263 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~ 342 (497)
+.++.+++.++. .|..+. +++++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555555542 222221 45555555555555444444555555555555555555444555555555555555555
Q ss_pred eeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822 343 HISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 343 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 418 (497)
.++...+..|..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5553333334455555555555555542222222 22455555555555555433334455555555555555544
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=147.63 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=103.7
Q ss_pred CEEECccCcccccCCcccccccCCcEEEeecceeeeeCC-cccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389 (497)
Q Consensus 311 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 389 (497)
+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|+.|++++|.+. .++...+..+++|+.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 57888888887 445433 3457888888888876544 45778888888888888887 4444333448888888888
Q ss_pred CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822 390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS 469 (497)
Q Consensus 390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 469 (497)
+|.+++..+..|..+++|++|++++|++.+..|..|..+++|+.|++++|.+... .+..+..+++|++|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEEec
Confidence 8888866666688888888888888888877777777776666655555554221 12233444555555555
Q ss_pred CCccc
Q 037822 470 SNNLS 474 (497)
Q Consensus 470 ~n~~~ 474 (497)
+|.++
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 55543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.6e-17 Score=145.11 Aligned_cols=145 Identities=22% Similarity=0.283 Sum_probs=115.8
Q ss_pred cEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366 (497)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 366 (497)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57788888877 5665543 68899999999988777778888899999999999988777888888899999999999
Q ss_pred cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822 367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP 435 (497)
Q Consensus 367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 435 (497)
.+. .++...+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 888 67776666688889999998888877677888888888888888888876666666555554433
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=5.8e-18 Score=169.07 Aligned_cols=188 Identities=24% Similarity=0.303 Sum_probs=122.1
Q ss_pred CCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecc
Q 037822 215 FPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNN 294 (497)
Q Consensus 215 ~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n 294 (497)
.++.+++++|.+.+..+..+++|+.|++++|.+. .+| ..+++|+.|++++|.+++ .|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 4444444444444432223446677777777666 455 246777777777777765 343 433 7777777777
Q ss_pred eeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh
Q 037822 295 NLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA 374 (497)
Q Consensus 295 ~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 374 (497)
.+++ +|. .+++|+.|++++|.+++ ++. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|.
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence 7764 444 46777777777777764 333 45677777887777764 554 44 77888888888777 6665
Q ss_pred hHhhhCCCC-------CEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822 375 WIGESMPSL-------SILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS 429 (497)
Q Consensus 375 ~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 429 (497)
+. .+| +.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 198 -~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 -VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 32 255 88888888877 5677677788888888888888777776665544
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=5.5e-18 Score=156.32 Aligned_cols=172 Identities=22% Similarity=0.305 Sum_probs=131.5
Q ss_pred cCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcE
Q 037822 257 QKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRF 336 (497)
Q Consensus 257 ~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~ 336 (497)
..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ . ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3578889999999888744 3477788999999999888743 33 7888899999999998874 2 34788888999
Q ss_pred EEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 337 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 337 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|++++|.+.+. ..+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|++++. +. +..+++|++|++++|+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhc-cCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCc
Confidence 99998888742 567788889999998888873 4 3333 488888888888888754 33 7888888888888888
Q ss_pred CcCCCCccccCCCCCcccCCCCCcccc
Q 037822 417 LSGIIPPCVGNFSGMKVEPPDSVKYEG 443 (497)
Q Consensus 417 i~~~~~~~l~~l~~L~~L~l~~~~~~~ 443 (497)
+++. + .+..+++|+.|++++|++..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8853 3 47777777777777776644
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.9e-18 Score=160.14 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=103.0
Q ss_pred CEEEccCCccccCCCCCccccceEecccCcccccCChhhhc-CCCCccEEEcccCcceecccccccCcCCccEEEeecce
Q 037822 217 ATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNN 295 (497)
Q Consensus 217 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~ 295 (497)
+.++++++.+.......+..++.|++++|.+.+ ++...+. .+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 456666666665444444456666666666663 3333223 56666666666666665555566666666666666666
Q ss_pred eecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccc---ccCCCCCEEecCCCcCcccC
Q 037822 296 LSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSL---KNCSMMDSLDLGDNQLSGNI 372 (497)
Q Consensus 296 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~ 372 (497)
+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+ ..+++|+.|++++|.+. .+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-cc
Confidence 665445556666666666666666665555666666666666666666653222223 34666666666666666 44
Q ss_pred ChhHhhhCCC--CCEEEccCcccc
Q 037822 373 PAWIGESMPS--LSILRLRSNYFN 394 (497)
Q Consensus 373 ~~~~~~~~~~--L~~L~l~~n~~~ 394 (497)
+...+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 4433333554 356666666655
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=153.50 Aligned_cols=171 Identities=23% Similarity=0.309 Sum_probs=135.0
Q ss_pred cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314 (497)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 314 (497)
++++.+++++|.+. .++. ...+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 36677777777665 3332 3568899999999999876544 8888999999999998873 3 3478889999999
Q ss_pred CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 394 (497)
Q Consensus 315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 394 (497)
+++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+ ++. + ..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l-~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-L-AGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-h-cCCCccCEEECCCCcCC
Confidence 999998743 4678889999999999998743 678889999999999999884 433 3 34899999999999998
Q ss_pred cCCCcccCCCCCCCEEEccCCcCcCCC
Q 037822 395 GTIPPELCKLPALHILDLSHNNLSGII 421 (497)
Q Consensus 395 ~~~~~~l~~l~~L~~L~l~~n~i~~~~ 421 (497)
+ ++ .+..+++|+.|++++|++....
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 4 44 4888999999999999988543
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=7.4e-18 Score=146.12 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=84.8
Q ss_pred ccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCC
Q 037822 305 SNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS 384 (497)
Q Consensus 305 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 384 (497)
..+++|+.|++++|.+. ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+.. +++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCC
Confidence 44555666666666655 223 3555556666666655442 2234455555555555555555433333332 55555
Q ss_pred EEEccCcccccCCCcccCCCCCCCEEEccCCc-CcCCCCccccCCCCCcccCCCCCcccccceeeeeCcccccccccccc
Q 037822 385 ILRLRSNYFNGTIPPELCKLPALHILDLSHNN-LSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLV 463 (497)
Q Consensus 385 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 463 (497)
.|++++|++++..+..+..+++|++|++++|+ +. .+| .+..+++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~---------------------------------~l~~l~~L 161 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM---------------------------------PLKTLPEL 161 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG---------------------------------GGGGCSSC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH---------------------------------hhcCCCCC
Confidence 55555555554344445555555555555554 33 221 23556777
Q ss_pred CEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 464 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 464 ~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
+.|++++|.+++. + .+..+++|++|++++|+|
T Consensus 162 ~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 162 KSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 8888888888753 3 578888888888888875
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=3.5e-18 Score=160.91 Aligned_cols=285 Identities=16% Similarity=0.124 Sum_probs=148.7
Q ss_pred CccEEEcCCCCCcccCCccccC-CCCCCEEECCCCccc--ccCCccccCCCCCCEEECcCCcCcccCCccCCC-------
Q 037822 18 LLEKLELGFNQLNGDLPSSLGY-LKNLRYLELWHNSFV--GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQ------- 87 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~-l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~------- 87 (497)
+++.|.++++ +.......+.. +++|++|||++|++. ...+. .++.++.+.+..+. ....+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccccc
Confidence 6888888775 22111123444 778999999988876 22221 22234555555553 33455666
Q ss_pred -CCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCc----CCCCCCccc
Q 037822 88 -LSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQ----LGPKFPTWL 162 (497)
Q Consensus 88 -l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~l 162 (497)
+++|++|++.+ .++. ++..+|.+|++|+.+.+..+.+. .-...++..+.++..+...... .......+|
T Consensus 99 g~~~L~~l~L~~-~i~~-I~~~aF~~~~~L~~l~l~~n~i~----~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKN-IEDAAFKGCDNLKICQIRKKTAP----NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp ECTTCCC-CBCT-TCCE-ECTTTTTTCTTCCEEEBCCSSCC----EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccCCCcEEECCc-cccc-hhHHHhhcCcccceEEcCCCCcc----ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 77888888877 6654 45557777777777777764322 1122333344444444433311 111112234
Q ss_pred cCCCCcc-EEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEe
Q 037822 163 RNQTELT-TLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLY 241 (497)
Q Consensus 163 ~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~ 241 (497)
..+..|+ .+.+.... ..+..+.... ....+++.+.
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~-----------------------------------------~~~~~~~~l~ 208 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAG-----------------------------------------LQPRDINFLT 208 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTT-----------------------------------------CCGGGCSEEE
T ss_pred ccccccceeEEecCCC---cHHHHHhhcc-----------------------------------------cCccccceEE
Confidence 4444444 23222111 1111111000 0011223333
Q ss_pred cccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCC-EEECccCcc
Q 037822 242 LRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLY-ILDMSNNSL 320 (497)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~i 320 (497)
+.+.-.. .....+...+++|+.+++++|.++.....+|.++++|+++++.+| +......+|.++++|+ .+++.+ .+
T Consensus 209 ~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 209 IEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 3222110 111111123667777777777676666666777777777777665 5545556666777776 777766 55
Q ss_pred cccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEe
Q 037822 321 SGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD 362 (497)
Q Consensus 321 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 362 (497)
+...+.+|..|++|+++++.++.+....+.+|.+|++|+.+.
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 545556666677777777666666655555666666666654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=144.21 Aligned_cols=133 Identities=25% Similarity=0.262 Sum_probs=69.4
Q ss_pred CccEEEcccCcceeccc-ccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEe
Q 037822 261 FLTDLDISFNSLNGSVS-KSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLIL 339 (497)
Q Consensus 261 ~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l 339 (497)
.+++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34455555555544322 23445555555555555555444445555555555555555555444444555555555555
Q ss_pred ecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822 340 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 394 (497)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 394 (497)
++|.+.+..+..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEEecCcCCc
Confidence 55555544455555555555555555555533233332 2555555555555554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6e-17 Score=143.80 Aligned_cols=141 Identities=22% Similarity=0.298 Sum_probs=94.7
Q ss_pred ccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCC
Q 037822 286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365 (497)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 365 (497)
.+.++++++.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777777766 5554433 6777777777777766666777777777777777777644445567777777777777
Q ss_pred CcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822 366 NQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM 431 (497)
Q Consensus 366 ~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 431 (497)
|.+. .++...+..+++|+.|++++|+++ .+|..+..+++|++|++++|++....+..+..+++|
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 7776 455444444777777777777776 566667777777777777777775544444444433
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=144.11 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=97.7
Q ss_pred CCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEE
Q 037822 258 KIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFL 337 (497)
Q Consensus 258 ~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L 337 (497)
.++.|++|++++|.+. ..+ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4566777777777666 223 4666677777777777554 23356667777777777777765556666777777777
Q ss_pred EeecceeeeeCCcccccCCCCCEEecCCCc-CcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 338 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
++++|.+.+..+..+..+++|++|++++|. +. .++ .+. .+++|+.|++++|++++ ++ .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 777777765555666677777777777776 54 444 233 36777777777777763 33 56667777777777777
Q ss_pred Cc
Q 037822 417 LS 418 (497)
Q Consensus 417 i~ 418 (497)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=8.8e-18 Score=169.69 Aligned_cols=191 Identities=22% Similarity=0.325 Sum_probs=146.5
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
.+..+.+..+.+.+..+. ..++.|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 555666766666543332 4678899999999988743 357888999999999998874333 788899999999
Q ss_pred ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
++|.+.+ + ..+..+++|++|++++|.+.+ ...+..+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+.+
T Consensus 95 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIKD-L-SSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCCC-C-TTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCC
T ss_pred cCCCCCC-C-hhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCC
Confidence 9998874 3 368888899999999998874 2467888999999999998874 4 3333 48899999999998885
Q ss_pred CCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCccccc
Q 037822 396 TIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGS 444 (497)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~ 444 (497)
..+ +..+++|+.|+|++|++.+. ..+..+++|+.|++++|++...
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 444 88888999999999988864 4688888888888888877543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=6.2e-17 Score=163.52 Aligned_cols=178 Identities=22% Similarity=0.307 Sum_probs=140.3
Q ss_pred cccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEE
Q 037822 235 FNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILD 314 (497)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 314 (497)
..|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.. .+ .+..+++|+.|+
T Consensus 43 ~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 36677777777765 3332 3578899999999999886544 8889999999999998873 33 688899999999
Q ss_pred CccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccc
Q 037822 315 MSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 394 (497)
Q Consensus 315 l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~ 394 (497)
+++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ + ..+++|+.|++++|.++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L-AGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G-TTCTTCCEEECCSSCCC
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h-ccCCCCCEEECcCCCCC
Confidence 999998743 4588899999999999998744 678889999999999999985444 3 34899999999999998
Q ss_pred cCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822 395 GTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF 428 (497)
Q Consensus 395 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 428 (497)
+ + ..+..+++|+.|+|++|++.+.....+..+
T Consensus 189 ~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 189 D-L-RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp B-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred C-C-hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 5 3 468899999999999999986544444433
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.1e-16 Score=142.11 Aligned_cols=135 Identities=19% Similarity=0.185 Sum_probs=86.1
Q ss_pred CCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEec
Q 037822 284 QQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 363 (497)
Q Consensus 284 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 363 (497)
++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55566666666655544555566666666666666665444445566666666666666666444455566677777777
Q ss_pred CCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 364 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 364 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
++|.+. .+|..+.. +++|+.|++++|++++..+..+..+++|+.|++++|++...
T Consensus 120 s~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 777766 66655543 77777777777777754445567777777777777777643
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=5.1e-17 Score=152.94 Aligned_cols=290 Identities=10% Similarity=-0.016 Sum_probs=172.9
Q ss_pred CCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEeccc
Q 037822 165 QTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRD 244 (497)
Q Consensus 165 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~ 244 (497)
+++++.|.++++- .......+....++|+.|++++|.+... ......++.+.......
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~---------------------~~~~~~~~~~~~~~~~~ 81 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMY---------------------SGKAGTYPNGKFYIYMA 81 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCE---------------------EESSSSSGGGCCEEECT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEe---------------------cCccccccccccccccc
Confidence 4567888887642 1122223333235677777777776510 00111111222233333
Q ss_pred CcccccCChhhhcC--------CCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECc
Q 037822 245 NSFSGPIPRDFGQK--------IPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMS 316 (497)
Q Consensus 245 ~~~~~~~~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 316 (497)
+ .++...+.. +++|+++++.+ .++.....+|.+|++|+++++++|.+....+.+|..+.++..+...
T Consensus 82 ~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 82 N----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp T----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred c----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 3 233344445 78888888887 7776777778888888888888887766666777777666666655
Q ss_pred cCcc----cccCCcccccccCCc-EEEeeccee-eeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC
Q 037822 317 NNSL----SGEIPESIGSLLSVR-FLILCNNHI-SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS 390 (497)
Q Consensus 317 ~n~i----~~~~~~~l~~~~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~ 390 (497)
.... ......+|..+.+|+ .+.+..... .......-....+++.+.+.++-.. .....+...+++|+.+++.+
T Consensus 157 ~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 157 SSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp CTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCC
Confidence 5321 112334455555665 333332211 0000000112344555555544221 22223333477888888888
Q ss_pred cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCc-ccCCCCCcccccceeeeeCccccccccccccCEEEcc
Q 037822 391 NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMK-VEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLS 469 (497)
Q Consensus 391 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 469 (497)
|+++.....+|..+++|+++++.+| +..+.+.+|.+|++|+ .+.++. .+. ......|.++++|++|+++
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~--------~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT--------AIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC--------EECTTTTTTCTTEEEEEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce--------EEchhhhhCCccCCEEEeC
Confidence 7777555567888888888888877 6656667788888887 777766 321 2233456778899999999
Q ss_pred CCcccccCChhhhccCCCCeEEC
Q 037822 470 SNNLSGEMPVELTRLIHLGTLNL 492 (497)
Q Consensus 470 ~n~~~~~~~~~l~~l~~L~~l~l 492 (497)
.|.++...+..|.++++|+++..
T Consensus 306 ~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCccCccchhhhcCCcchhhhcc
Confidence 99999888889999999999863
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.7e-16 Score=143.88 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=121.6
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
++..++++++.+.+ ++ ....+++|++|++++|.+... + .+..+++|++|++++|.+.+ .+. +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 67777788877763 22 124678888888888888743 3 57778888888888888874 333 778888888888
Q ss_pred ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCccccc
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~ 395 (497)
++|++++. +. +.. ++|++|++++|.+++ . ..+..+++|+.|++++|++. .++ .+. .+++|+.|++++|++++
T Consensus 93 ~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~-~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKNL-NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK-SIV-MLG-FLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSCC-TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC-BCG-GGG-GCTTCCEEECTTSCCCB
T ss_pred CCCccCCc-Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC-CCh-HHc-cCCCCCEEECCCCcCcc
Confidence 88888743 22 222 788888888888864 2 35777888888888888887 344 233 37888888888888875
Q ss_pred CCCcccCCCCCCCEEEccCCcCcCC
Q 037822 396 TIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 396 ~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
. ..+..+++|+.|++++|++...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5677788888888888888754
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.4e-16 Score=144.47 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=88.5
Q ss_pred EEEccCCccccCCC-CCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeeccee
Q 037822 218 TVDLSSNSFEGPLP-LWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNL 296 (497)
Q Consensus 218 ~l~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~ 296 (497)
.++++++.+.+... ..+++++.|++++|.+. .++ . ...+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc
Confidence 34444444443331 12346666666666655 333 2 2356666666666666654333 55666666666666666
Q ss_pred ecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhH
Q 037822 297 SGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 376 (497)
Q Consensus 297 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 376 (497)
.+ .+.. .. ++|+.|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+
T Consensus 98 ~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l 168 (263)
T 1xeu_A 98 KN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGL 168 (263)
T ss_dssp SC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTS
T ss_pred CC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHh
Confidence 52 3322 22 5666666666666532 2355666666666666666532 2455666666666666666533 222
Q ss_pred hhhCCCCCEEEccCccccc
Q 037822 377 GESMPSLSILRLRSNYFNG 395 (497)
Q Consensus 377 ~~~~~~L~~L~l~~n~~~~ 395 (497)
. .+++|+.|++++|++++
T Consensus 169 ~-~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 T-RLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp T-TCCCCCEEEEEEEEEEC
T ss_pred c-cCCCCCEEeCCCCcccC
Confidence 2 35666666666666653
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=2.9e-14 Score=137.55 Aligned_cols=335 Identities=11% Similarity=0.008 Sum_probs=182.0
Q ss_pred CCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccCh
Q 037822 28 QLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITE 107 (497)
Q Consensus 28 ~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 107 (497)
.++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ +.. +..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~-i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKS-IGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE-ECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eee-ecc
Confidence 466677778889999999998754 65566778889999999998765 55566778888888888877655 332 344
Q ss_pred hhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhh
Q 037822 108 THFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFW 187 (497)
Q Consensus 108 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 187 (497)
.+|.++..++...... .......++..+.+|+.+.+.+.. ......+|..+++|+.+++..+ +.......|.
T Consensus 134 ~aF~~~~~~~~~~~~~------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp TTTTTCCCSEEECCTT------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred eeeecccccccccCcc------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 4777776544433322 112234567778888888886542 3344567888899998888765 2222233333
Q ss_pred hcccCccEEEcccccccccCCccccccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEc
Q 037822 188 QLDLTLDELDVAYNELSGSIPNSLGFRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDI 267 (497)
Q Consensus 188 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 267 (497)
.. ..|+.+.+..+... ..... .....|+.+.+
T Consensus 206 ~~-~~L~~i~~~~~~~~-i~~~~----------------------------------------------~~~~~l~~i~i 237 (394)
T 4fs7_A 206 EC-ILLENMEFPNSLYY-LGDFA----------------------------------------------LSKTGVKNIII 237 (394)
T ss_dssp TC-TTCCBCCCCTTCCE-ECTTT----------------------------------------------TTTCCCCEEEE
T ss_pred cc-cccceeecCCCceE-eehhh----------------------------------------------cccCCCceEEE
Confidence 22 35555444332211 00000 11233334433
Q ss_pred ccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeee
Q 037822 268 SFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGE 347 (497)
Q Consensus 268 ~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~ 347 (497)
.... ......++..+..++.+.+..+... .....|..+..++.+......+ ...++..+.+|+.+.+..+ +...
T Consensus 238 p~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred CCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-ccee
Confidence 3221 1122334444455555555443222 3333444455555554443322 2234455555555555443 3323
Q ss_pred CCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccC
Q 037822 348 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGN 427 (497)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~ 427 (497)
...+|.+|++|+.+++..+ +. .+....+.+|++|+.+.+..+ ++.....+|.+|++|+.+++..+ +. ....+|.+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~ 386 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFED 386 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCT
T ss_pred chhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecC
Confidence 4445556666666666433 33 444444445666666666544 33333455666666666666543 22 12235666
Q ss_pred CCCCcc
Q 037822 428 FSGMKV 433 (497)
Q Consensus 428 l~~L~~ 433 (497)
|++|+.
T Consensus 387 c~~L~~ 392 (394)
T 4fs7_A 387 TTKFKW 392 (394)
T ss_dssp TCEEEE
T ss_pred CCCCcE
Confidence 665554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.4e-18 Score=170.23 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCC
Q 037822 358 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD 437 (497)
Q Consensus 358 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 437 (497)
|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 555555555555 3443 22 2555555555555555 445555555555555555555553 33 45555555555555
Q ss_pred CCcccccceeeeeCccccccccccccCEEEccCCcccccCCh---hhhccCCCCeEEC
Q 037822 438 SVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSGEMPV---ELTRLIHLGTLNL 492 (497)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~l~l 492 (497)
+|.+.... .+..++.+++|+.|++++|.+++.+|. .+..+|+|+.|++
T Consensus 517 ~N~l~~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSA-------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSS-------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCC-------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 55543221 023345567778889999988866542 2445889998875
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=2.1e-14 Score=138.51 Aligned_cols=335 Identities=12% Similarity=0.009 Sum_probs=226.9
Q ss_pred ccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCceEeccCccccceeee
Q 037822 53 FVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLKELALNKQSENISLIF 132 (497)
Q Consensus 53 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 132 (497)
++.+-..+|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++. +...+|.++..|+.+.+... ...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~-----l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLM-----LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTT-----CCE
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCc-----eee
Confidence 45566688999999999999754 77677889999999999999866 543 55668999999999887662 222
Q ss_pred cccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeeccccccccCchhhhcccCccEEEcccccccccCCcccc
Q 037822 133 NISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNNVRISDTIPDWFWQLDLTLDELDVAYNELSGSIPNSLG 212 (497)
Q Consensus 133 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 212 (497)
....++..+...+....... ......+|..+++|+.+.+.++... .....|.. +.+|+.+.+..+ +
T Consensus 131 i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~-c~~L~~i~l~~~-~--------- 196 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSG-CGKLKSIKLPRN-L--------- 196 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTT-CTTCCBCCCCTT-C---------
T ss_pred ecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccC-CCCceEEEcCCC-c---------
Confidence 22333444433332222222 2233467889999999999765421 22333332 235555544332 1
Q ss_pred ccCCCEEEccCCccccCCCCCccccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEee
Q 037822 213 FRFPATVDLSSNSFEGPLPLWSFNVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVIS 292 (497)
Q Consensus 213 ~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 292 (497)
. .+....+..++.|+.+.+..+... . ........+|+.+.+.
T Consensus 197 -----------------------------------~-~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip 238 (394)
T 4fs7_A 197 -----------------------------------K-IIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIP 238 (394)
T ss_dssp -----------------------------------C-EECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEEC
T ss_pred -----------------------------------e-EeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEEC
Confidence 1 222233345666776666655432 1 2233445789999886
Q ss_pred cceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccC
Q 037822 293 NNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 372 (497)
Q Consensus 293 ~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 372 (497)
..- .......+..+..++.+.+..+... .....+..+..++.+......+ ....+..+.+|+.+.+.++ +. .+
T Consensus 239 ~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I 311 (394)
T 4fs7_A 239 DSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FI 311 (394)
T ss_dssp TTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EE
T ss_pred CCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-ee
Confidence 543 3245567888999999999887554 6677888999999988876654 3457888999999999765 54 66
Q ss_pred ChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCc
Q 037822 373 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGS 452 (497)
Q Consensus 373 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 452 (497)
....+.++++|+.+++..+ ++.....+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+.++.+-- ..
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~---------~~ 380 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE---------QY 380 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG---------GG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE---------Eh
Confidence 6777777999999999754 55445678999999999999877 6656778999999999988764421 11
Q ss_pred cccccccccccCEE
Q 037822 453 EYVFYTTLYLVNLM 466 (497)
Q Consensus 453 ~~~~~~~~~~L~~L 466 (497)
...+..+++|+++
T Consensus 381 -~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 -RYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGBCTTCEEEEE
T ss_pred -hheecCCCCCcEE
Confidence 1235677888765
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.3e-15 Score=128.65 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=57.9
Q ss_pred CEEECccCcccccCCcccccccCCcEEEeecceeeeeCCc-ccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEcc
Q 037822 311 YILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 389 (497)
Q Consensus 311 ~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 389 (497)
+.+++++++++ .+|..+. +++++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+.. +++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECC
Confidence 45666666654 3333222 2556666666655533332 2455555555555555555333333332 5555555555
Q ss_pred CcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCC
Q 037822 390 SNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFS 429 (497)
Q Consensus 390 ~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 429 (497)
+|++++..+..|..+++|++|++++|++++..|..+..++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 5555544444455555555555555555544444443333
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.7e-15 Score=127.57 Aligned_cols=131 Identities=22% Similarity=0.218 Sum_probs=53.3
Q ss_pred CccEEEeecceee-cccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEec
Q 037822 285 QLLTLVISNNNLS-GEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 363 (497)
Q Consensus 285 ~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 363 (497)
+|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3344444444333 22333333344444444444444322 33344444444444444443323333333444444444
Q ss_pred CCCcCcccCCh-hHhhhCCCCCEEEccCcccccCCC---cccCCCCCCCEEEccCCcCc
Q 037822 364 GDNQLSGNIPA-WIGESMPSLSILRLRSNYFNGTIP---PELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 364 ~~~~i~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~i~ 418 (497)
++|.+. .++. ..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 444444 2211 111124444444444444442222 13444555555555555444
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=1.5e-16 Score=164.75 Aligned_cols=120 Identities=27% Similarity=0.295 Sum_probs=57.2
Q ss_pred CcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhC
Q 037822 301 PRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM 380 (497)
Q Consensus 301 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 380 (497)
+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+. .+|..+.. +
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-C 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-G
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-C
Confidence 344444555555555555554 33333344555555555555554 44444555555555555555554 44444433 4
Q ss_pred CCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccc
Q 037822 381 PSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCV 425 (497)
Q Consensus 381 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l 425 (497)
++|+.|++++|.++ .+|..|..+++|++|+|++|++++..|..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 55555555555554 444445555555555555555554444443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=3e-15 Score=128.85 Aligned_cols=133 Identities=25% Similarity=0.305 Sum_probs=102.0
Q ss_pred cceEecccCcccccCChhhhcCCCCccEEEcccCcceecccc-cccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 237 VTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSK-SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
-+.++++++.+. .+|..+ .+.+++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 356677777665 566543 34788888888888755543 4777888888888888888766778888888888888
Q ss_pred ccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCC
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 373 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 373 (497)
++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888887777778888888888888888887777788888888888888888775544
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=6.2e-15 Score=124.14 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=103.8
Q ss_pred cCCCCCEEECccCccc-ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCC
Q 037822 306 NISSLYILDMSNNSLS-GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS 384 (497)
Q Consensus 306 ~~~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 384 (497)
.+++|++|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+. .+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCC
Confidence 3578999999999997 56677788999999999999999754 7788999999999999999855665544 499999
Q ss_pred EEEccCcccccCC-CcccCCCCCCCEEEccCCcCcCCCC---ccccCCCCCcccCCCCC
Q 037822 385 ILRLRSNYFNGTI-PPELCKLPALHILDLSHNNLSGIIP---PCVGNFSGMKVEPPDSV 439 (497)
Q Consensus 385 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~~ 439 (497)
.|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|+++.|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999998532 2678899999999999999985544 35555555544443333
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.8e-17 Score=166.43 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=59.9
Q ss_pred ccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCC
Q 037822 286 LLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 365 (497)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 365 (497)
|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 455555555554 2333 555555555555555555 444455555555555555555542 33 455555555555555
Q ss_pred CcCcccC-ChhHhhhCCCCCEEEccCcccccCCCc---ccCCCCCCCEEE
Q 037822 366 NQLSGNI-PAWIGESMPSLSILRLRSNYFNGTIPP---ELCKLPALHILD 411 (497)
Q Consensus 366 ~~i~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~ 411 (497)
|.+.+.. |..+.. +++|+.|++++|++++..+. .+..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5555332 444433 55555555555555532221 112355555554
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=1.3e-13 Score=132.29 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=64.8
Q ss_pred cCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccccccChhhhhcCCCCc
Q 037822 38 GYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWEGIITETHFRNLSNLK 117 (497)
Q Consensus 38 ~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 117 (497)
..+..++.+.+.++ ++.+...+|.+. +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++. +...+|.+|++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCC
Confidence 34456666666543 333445566654 5777776655 554555566663 577777765 3443 3444666677777
Q ss_pred eEeccCccccceeeecccCCCCCCccccEEEccCCcCCCCCCccccCCCCccEEEeec
Q 037822 118 ELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPKFPTWLRNQTELTTLVLNN 175 (497)
Q Consensus 118 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 175 (497)
.+.+..+.+. .++.....+.+|+.+.+..+ +......+|..+++|+.+++..
T Consensus 184 ~l~l~~n~l~-----~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 184 KADLSKTKIT-----KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EEECTTSCCS-----EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred eeecCCCcce-----EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 6666653211 12222222334444444322 2233334455555666555543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.5e-15 Score=123.79 Aligned_cols=104 Identities=25% Similarity=0.312 Sum_probs=61.3
Q ss_pred CccEEEcCCCCCc-ccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEc
Q 037822 18 LLEKLELGFNQLN-GDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDL 96 (497)
Q Consensus 18 ~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 96 (497)
+|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 6666777777665 45555666666666666666666543 45666666666666666666445555555666666666
Q ss_pred CCCccccccChhhhhcCCCCceEeccC
Q 037822 97 SENQWEGIITETHFRNLSNLKELALNK 123 (497)
Q Consensus 97 ~~n~l~~~~~~~~~~~l~~L~~L~l~~ 123 (497)
++|.+++......+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 666665421112344444444444444
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=125.09 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=74.0
Q ss_pred cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccC
Q 037822 335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH 414 (497)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 414 (497)
++++++++.++ .+|..+ .++|++|++++|.+. .+|..+. .+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 56778888776 555544 357888888888887 6775444 488888888888888866666788888888888888
Q ss_pred CcCcCCCCccccCCCCCcccCCCCCcc
Q 037822 415 NNLSGIIPPCVGNFSGMKVEPPDSVKY 441 (497)
Q Consensus 415 n~i~~~~~~~l~~l~~L~~L~l~~~~~ 441 (497)
|.+++..+..|..+++|+.|++++|.+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 888877776776666665555544444
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.6e-15 Score=122.22 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCCEEECccCccc-ccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEE
Q 037822 308 SSLYILDMSNNSLS-GEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL 386 (497)
Q Consensus 308 ~~L~~L~l~~n~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 386 (497)
++++.|++++|.+. +..+..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.+|..+. .+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEE
Confidence 45566666666555 34444555566666666666666533 4556666666677766666643444333 36677777
Q ss_pred EccCcccccC-CCcccCCCCCCCEEEccCCcCcCCCC---ccccCCCCCcccCC
Q 037822 387 RLRSNYFNGT-IPPELCKLPALHILDLSHNNLSGIIP---PCVGNFSGMKVEPP 436 (497)
Q Consensus 387 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l 436 (497)
++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 7777776642 22556667777777777777765444 34555555555443
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=3.3e-13 Score=129.59 Aligned_cols=183 Identities=11% Similarity=0.121 Sum_probs=116.0
Q ss_pred ccceEecccCcccccCChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEEC
Q 037822 236 NVTKLYLRDNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDM 315 (497)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 315 (497)
+|+.+++.+|.+. .++...+. ..+|+.+.+..+ +......+|.++++|+.+.+..+ +......+|.. .+|+.+.+
T Consensus 181 ~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 181 NLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred cCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 3444444444443 33333333 456677776643 55556666777777777777654 33344455555 56777777
Q ss_pred ccCcccccCCcccccccCCcEEEeecceee-----eeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccC
Q 037822 316 SNNSLSGEIPESIGSLLSVRFLILCNNHIS-----GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS 390 (497)
Q Consensus 316 ~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~ 390 (497)
. +.++.....+|..|++|+.+++.++.+. .....+|.+|++|+.+.+.+ .+. .+....+.+|++|+.+.+..
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECc
Confidence 3 4455455667777777777777776553 34556778888888888874 355 66666666688888888855
Q ss_pred cccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCC
Q 037822 391 NYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNF 428 (497)
Q Consensus 391 n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l 428 (497)
+ ++.....+|..+ +|+.+++++|.+....+..|.++
T Consensus 333 ~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 333 N-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp T-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred c-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 4 544455677888 88888888887765555556555
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.5e-15 Score=157.31 Aligned_cols=154 Identities=23% Similarity=0.382 Sum_probs=114.4
Q ss_pred ChhhhcCCCCccEEEcccCcceecccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccc
Q 037822 252 PRDFGQKIPFLTDLDISFNSLNGSVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSL 331 (497)
Q Consensus 252 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~ 331 (497)
+...+..++.|+.|++++|.+. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3344467888999999999987 55666668899999999999988 78888899999999999999998 678889999
Q ss_pred cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEE
Q 037822 332 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILD 411 (497)
Q Consensus 332 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 411 (497)
++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+.+|..+.........+++++|.+++.+|. .|+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 99999999999987 67888999999999999999998777766544222233477888888866654 455566
Q ss_pred ccCC
Q 037822 412 LSHN 415 (497)
Q Consensus 412 l~~n 415 (497)
++.|
T Consensus 366 l~~n 369 (727)
T 4b8c_D 366 INTD 369 (727)
T ss_dssp ----
T ss_pred eecc
Confidence 6665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=6.6e-14 Score=118.89 Aligned_cols=130 Identities=19% Similarity=0.209 Sum_probs=88.8
Q ss_pred CcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEcc
Q 037822 334 VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLS 413 (497)
Q Consensus 334 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 413 (497)
.+.++++++.+. .+|..+ .++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467788888776 444433 368888888888887 5555444457888888888888885555567788888888888
Q ss_pred CCcCcCCCCccccCCCCCcccCCCCCcccccceeeeeCccccccccccccCEEEccCCcccc
Q 037822 414 HNNLSGIIPPCVGNFSGMKVEPPDSVKYEGSLQVVLKGSEYVFYTTLYLVNLMDLSSNNLSG 475 (497)
Q Consensus 414 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 475 (497)
+|++++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--------VPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--------CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceE--------eCHHHhcCCcccCEEEecCCCeec
Confidence 888886666667777777776666666532 122233455666666666666654
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=1.8e-12 Score=125.01 Aligned_cols=134 Identities=10% Similarity=0.144 Sum_probs=67.3
Q ss_pred cccccccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822 275 SVSKSICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354 (497)
Q Consensus 275 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 354 (497)
....+|..+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|..|.+|+.+++..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 44455666666666666544332 344556666666666664 2333344455666666666666543 33344455666
Q ss_pred CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCc
Q 037822 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNN 416 (497)
Q Consensus 355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 416 (497)
|.+|+.+.+..+ ++ .+....+.+|++|+.+++.++.... .++..+..|+.+.+..+.
T Consensus 333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 666666666433 33 4555555556666666665554321 234455555555555443
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=9.6e-14 Score=119.37 Aligned_cols=109 Identities=25% Similarity=0.294 Sum_probs=55.5
Q ss_pred CCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEE
Q 037822 308 SSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR 387 (497)
Q Consensus 308 ~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 387 (497)
+++++|++++|.++ .++..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEE
Confidence 34555555555554 33344555555555555555555444444555555555555555555 23222222355555555
Q ss_pred ccCcccccCCCcccCCCCCCCEEEccCCcCc
Q 037822 388 LRSNYFNGTIPPELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 388 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~ 418 (497)
+++|.++...+..|..+++|+.|++++|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5555555333334555566666666666554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.5e-13 Score=116.64 Aligned_cols=130 Identities=19% Similarity=0.199 Sum_probs=77.7
Q ss_pred cEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCC
Q 037822 287 LTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 366 (497)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 366 (497)
+.++++++.+. .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555554 333322 256666666666666444455566666666666666666444445566666777777777
Q ss_pred cCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCC
Q 037822 367 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGI 420 (497)
Q Consensus 367 ~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~ 420 (497)
.++ .++...+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred Ccc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666 44443333366777777777776644334456667777777777776644
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.8e-14 Score=120.21 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCCh--hHhhhCCCCCEE
Q 037822 309 SLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA--WIGESMPSLSIL 386 (497)
Q Consensus 309 ~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~--~~~~~~~~L~~L 386 (497)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .++. .+. .+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLA-SLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGG-GCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhh-cCCCCCEE
Confidence 444444444444422 23344444444444444444222222244444444444444443 2332 122 24444444
Q ss_pred EccCcccccCCCcc----cCCCCCCCEEEccCCcC
Q 037822 387 RLRSNYFNGTIPPE----LCKLPALHILDLSHNNL 417 (497)
Q Consensus 387 ~l~~n~~~~~~~~~----l~~l~~L~~L~l~~n~i 417 (497)
++++|+++ ..+.. +..+++|+.|++++|.+
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 44444443 22221 34444444444444443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.6e-14 Score=119.18 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=97.4
Q ss_pred ccccCCCCCEEECccCcccccCCcccccc-cCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCC
Q 037822 303 LWSNISSLYILDMSNNSLSGEIPESIGSL-LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP 381 (497)
Q Consensus 303 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 381 (497)
.+..+++|++|++++|.+.. .+. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+. .++..++..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 35567889999999998874 443 4444 4999999999999865 67888999999999999998 56655655599
Q ss_pred CCCEEEccCcccccCCCc--ccCCCCCCCEEEccCCcCcCCCCcc----ccCCCCCcccCCC
Q 037822 382 SLSILRLRSNYFNGTIPP--ELCKLPALHILDLSHNNLSGIIPPC----VGNFSGMKVEPPD 437 (497)
Q Consensus 382 ~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~----l~~l~~L~~L~l~ 437 (497)
+|+.|++++|++. .++. .+..+++|+.|++++|++.. .|.. +..+++|+.|+++
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTE
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCC
Confidence 9999999999997 4554 78889999999999999984 3432 4444444443333
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=1.8e-11 Score=118.01 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=67.7
Q ss_pred ccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhh
Q 037822 299 EIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE 378 (497)
Q Consensus 299 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 378 (497)
....+|..+..|+.+.+..+... ....+|..+++|+.+.+.. .+......+|.+|.+|+.+.+..+ ++ .+....+.
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~ 331 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFA 331 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhh
Confidence 34455666677777766554332 4455666666666666643 333344456666666666666543 33 44444555
Q ss_pred hCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccC
Q 037822 379 SMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEP 435 (497)
Q Consensus 379 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 435 (497)
+|.+|+.+.+..+ ++.....+|.+|++|+.+++.++.... ..+..+..|+.+.
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 5666666666433 332333456666666666666554321 2344444444433
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.9e-15 Score=129.81 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=34.9
Q ss_pred cccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCC
Q 037822 279 SICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMM 358 (497)
Q Consensus 279 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 358 (497)
.+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.++ ..+..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444432 23 3444444444444444443 223333333444444444444432 11 23334444
Q ss_pred CEEecCCCcCc
Q 037822 359 DSLDLGDNQLS 369 (497)
Q Consensus 359 ~~L~l~~~~i~ 369 (497)
+.|++++|.+.
T Consensus 118 ~~L~l~~N~i~ 128 (198)
T 1ds9_A 118 RVLYMSNNKIT 128 (198)
T ss_dssp SEEEESEEECC
T ss_pred CEEECCCCcCC
Confidence 44444444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.2e-12 Score=108.44 Aligned_cols=105 Identities=24% Similarity=0.291 Sum_probs=90.3
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+.++++++++.++. +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46899999999984 565553 899999999999998888899999999999999999997777778999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSE 126 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 126 (497)
+|++++. +...|..+++|+.|++++|.+
T Consensus 87 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLKSI-PRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCCCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred CCccCEe-CHHHhcCCCCCCEEEeCCCCC
Confidence 9999874 444788889888888888644
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.7e-15 Score=130.05 Aligned_cols=136 Identities=21% Similarity=0.235 Sum_probs=104.6
Q ss_pred cCcCCccEEEeecceeecccCc------ccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCccccc
Q 037822 281 CNLQQLLTLVISNNNLSGEIPR------LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKN 354 (497)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 354 (497)
.....++.++++.+.+.+..+. .+..+++|++|++++|.+.+ .+ .+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555555555544444 78889999999999999985 55 7888999999999999998 67777777
Q ss_pred CCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCC-cccCCCCCCCEEEccCCcCcCCCC
Q 037822 355 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP-PELCKLPALHILDLSHNNLSGIIP 422 (497)
Q Consensus 355 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~ 422 (497)
+++|+.|++++|.+. .++ .+. .+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 889999999999988 455 343 48899999999999884221 367889999999999999875544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.9e-12 Score=107.65 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=36.2
Q ss_pred cEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccC
Q 037822 335 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSH 414 (497)
Q Consensus 335 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 414 (497)
++++++++.++ .+|..+ .++|+.|++++|.+.+..+..+. .+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555544 233322 24455555555555422222222 244555555555554433333344445555555555
Q ss_pred CcCcCC
Q 037822 415 NNLSGI 420 (497)
Q Consensus 415 n~i~~~ 420 (497)
|++.+.
T Consensus 88 N~l~~~ 93 (170)
T 3g39_A 88 NQLKSI 93 (170)
T ss_dssp SCCCCC
T ss_pred CccCEe
Confidence 554433
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4.4e-12 Score=106.89 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=87.8
Q ss_pred ccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC
Q 037822 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98 (497)
Q Consensus 19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 98 (497)
-+.+++++++++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 5565554 8999999999999988888999999999999999999976666688999999999999
Q ss_pred CccccccChhhhhcCCCCceEeccCccc
Q 037822 99 NQWEGIITETHFRNLSNLKELALNKQSE 126 (497)
Q Consensus 99 n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 126 (497)
|++++ ++...+..+++|+.|++++|.+
T Consensus 91 N~l~~-l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLKS-IPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCCC-CCTTTTTTCTTCSEEECCSSCB
T ss_pred Cccce-eCHHHhccccCCCEEEeCCCCc
Confidence 99987 4444688888888888888643
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=4.8e-12 Score=106.67 Aligned_cols=87 Identities=24% Similarity=0.262 Sum_probs=79.6
Q ss_pred CccEEEcCCCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
+|++|++++|++++..+..|..+++|++|++++|++.+..+..|.++++|++|++++|+++...+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 89999999999998889999999999999999999997666678999999999999999996666669999999999999
Q ss_pred CCccccc
Q 037822 98 ENQWEGI 104 (497)
Q Consensus 98 ~n~l~~~ 104 (497)
+|.+...
T Consensus 114 ~N~~~c~ 120 (174)
T 2r9u_A 114 NNPWDCE 120 (174)
T ss_dssp SSCBCTT
T ss_pred CCCcccc
Confidence 9998753
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3.2e-14 Score=135.27 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=85.8
Q ss_pred CccEEEcCCCCCcccCCccccCC-----CCCCEEECCCCcccccCCccc-cCCCCCCEEECcCCcCcccCCccC-----C
Q 037822 18 LLEKLELGFNQLNGDLPSSLGYL-----KNLRYLELWHNSFVGSIPPSI-GNLTFLKELYLSSNQMNGKFPENF-----G 86 (497)
Q Consensus 18 ~L~~L~l~~~~i~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~-----~ 86 (497)
+|++|++++|.++......+... ++|++|++++|.++......+ ..+++|++|++++|.+++.....+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 56677777777664433333322 567777777776653322222 234566777777777664333333 2
Q ss_pred CCCCCCEEEcCCCccccccC---hhhhhcCCCCceEeccCccccceeeecccCCCCCCccccEEEccCCcCCCC----CC
Q 037822 87 QLSAVEVLDLSENQWEGIIT---ETHFRNLSNLKELALNKQSENISLIFNISSHWIPPFKLTFINIRSCQLGPK----FP 159 (497)
Q Consensus 87 ~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~----~~ 159 (497)
..++|++|++++|.+++... ...+..++.|++|++++|.+.......+...+...++|++|+|++|.++.. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 35667777777776653211 113455666666666665544333333344444444555555555555421 22
Q ss_pred ccccCCCCccEEEeeccccccc
Q 037822 160 TWLRNQTELTTLVLNNVRISDT 181 (497)
Q Consensus 160 ~~l~~l~~L~~L~l~~~~~~~~ 181 (497)
..+...++|+.|++++|.+++.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHhCCCCCEEeccCCCCCHH
Confidence 2333445555555555555443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=6.6e-14 Score=133.11 Aligned_cols=174 Identities=16% Similarity=0.063 Sum_probs=125.3
Q ss_pred CCCCCEEECccCcccccCCccccc-----ccCCcEEEeecceeeeeCCccc-ccCCCCCEEecCCCcCcccCChhHhh--
Q 037822 307 ISSLYILDMSNNSLSGEIPESIGS-----LLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGE-- 378 (497)
Q Consensus 307 ~~~L~~L~l~~n~i~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~~-- 378 (497)
++.|+.|++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|++++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999988554444433 2699999999999864333222 34678999999999998655544433
Q ss_pred --hCCCCCEEEccCcccccC----CCcccCCCCCCCEEEccCCcCcCCC----CccccCCCCCcccCCCCCcccccceee
Q 037822 379 --SMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLSGII----PPCVGNFSGMKVEPPDSVKYEGSLQVV 448 (497)
Q Consensus 379 --~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~ 448 (497)
..++|+.|++++|.++.. ++..+..+++|++|+|++|.+++.. +..+...+.|+.|++++|.+.......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 257899999999998752 3344577889999999999997542 455677888999999999875432111
Q ss_pred eeCccccccccccccCEEEccCCcccccCChhhhcc
Q 037822 449 LKGSEYVFYTTLYLVNLMDLSSNNLSGEMPVELTRL 484 (497)
Q Consensus 449 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 484 (497)
....+...++|++|+|++|.+++.....+..+
T Consensus 231 ----l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 ----LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp ----HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred ----HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 11233456889999999999987766666554
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=2.6e-09 Score=102.38 Aligned_cols=146 Identities=10% Similarity=0.066 Sum_probs=70.8
Q ss_pred ccCcCCccEEEeecceeecccCcccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCC
Q 037822 280 ICNLQQLLTLVISNNNLSGEIPRLWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMD 359 (497)
Q Consensus 280 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 359 (497)
+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......|.+|++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 11123334444555555555443 33233444555555555555432 2223334555566666
Q ss_pred EEecCCCcCcccCChhHhhhCCCCCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCC
Q 037822 360 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGM 431 (497)
Q Consensus 360 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 431 (497)
.+.+.++.+. .+....+.+|++|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.+|..+
T Consensus 290 ~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 290 KVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 6666555554 455545555666666666433 33233345666666666666543 443444456555433
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=5e-09 Score=100.33 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=61.8
Q ss_pred ccccCCCCCEEECccCcccccCCcccccccCCcEEEeecceeeeeCCcccccCCCCCEEecCCCcCcccCChhHhhhCCC
Q 037822 303 LWSNISSLYILDMSNNSLSGEIPESIGSLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPS 382 (497)
Q Consensus 303 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~ 382 (497)
.+..+.+++.+.+..+ +......++..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +. .++...+.+|++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccc
Confidence 3444455555555433 22233344555555555555443 22233444555555555555432 22 334444444555
Q ss_pred CCEEEccCcccccCCCcccCCCCCCCEEEccCCcCcCCCCccccCCCCCcccCCC
Q 037822 383 LSILRLRSNYFNGTIPPELCKLPALHILDLSHNNLSGIIPPCVGNFSGMKVEPPD 437 (497)
Q Consensus 383 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 437 (497)
|+.+.+.++.++.....+|.+|.+|+.+.+..+ +..+...+|.+|++|+.+.+.
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 555555555444333345555555555555433 333334455555555555543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=2.4e-10 Score=108.21 Aligned_cols=105 Identities=22% Similarity=0.200 Sum_probs=89.0
Q ss_pred cEEEcCCC-CCcccCCccccCCCCCCEEECCC-CcccccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcC
Q 037822 20 EKLELGFN-QLNGDLPSSLGYLKNLRYLELWH-NSFVGSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLS 97 (497)
Q Consensus 20 ~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 97 (497)
..++++++ +++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789988 888 4666 99999999999996 99987777889999999999999999998888889999999999999
Q ss_pred CCccccccChhhhhcCCCCceEeccCccccc
Q 037822 98 ENQWEGIITETHFRNLSNLKELALNKQSENI 128 (497)
Q Consensus 98 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 128 (497)
+|++++ ++...+..++ |+.|++.+|.+.+
T Consensus 89 ~N~l~~-~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALES-LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccce-eCHHHcccCC-ceEEEeeCCCccC
Confidence 999987 4444677666 9999999976653
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.6e-10 Score=107.92 Aligned_cols=93 Identities=23% Similarity=0.150 Sum_probs=66.5
Q ss_pred CCccccCCCCCCCCCCccEEEcCC-CCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCCcCcccC
Q 037822 3 VSDFIDGLSECTNSSLLEKLELGF-NQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSNQMNGKF 81 (497)
Q Consensus 3 ~~~~l~~l~~~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 81 (497)
||. +..++ +|++|+|++ |.+++..+..|..+++|++|+|++|.+.+..|.+|.++++|++|+|++|+++...
T Consensus 24 ip~-l~~~~------~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 24 LHH-LPGAE------NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp TTT-SCSCS------CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred cCC-CCCCC------CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 455 55555 778888875 7777666677777888888888888777777777777888888888888777544
Q ss_pred CccCCCCCCCCEEEcCCCcccc
Q 037822 82 PENFGQLSAVEVLDLSENQWEG 103 (497)
Q Consensus 82 ~~~~~~l~~L~~L~l~~n~l~~ 103 (497)
+..+..++ |+.|++.+|.+..
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp STTTCSCC-CCEEECCSSCCCC
T ss_pred HHHcccCC-ceEEEeeCCCccC
Confidence 44454444 7888888777654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1.1e-10 Score=109.95 Aligned_cols=12 Identities=17% Similarity=0.002 Sum_probs=6.6
Q ss_pred CCCCccEEEccc
Q 037822 258 KIPFLTDLDISF 269 (497)
Q Consensus 258 ~~~~L~~L~l~~ 269 (497)
.+++|+.|.+..
T Consensus 137 ~l~~L~~L~l~~ 148 (362)
T 2ra8_A 137 KFAHFEGLFWGD 148 (362)
T ss_dssp HHTTCSEEEECC
T ss_pred hcchhhheeecC
Confidence 345666665543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.2e-09 Score=102.95 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCCCCEEecCCCcCcccCChhHhh--hCCCCCEEEccCcccccC----CCcccCCCCCCCEEEccCCcCc
Q 037822 355 CSMMDSLDLGDNQLSGNIPAWIGE--SMPSLSILRLRSNYFNGT----IPPELCKLPALHILDLSHNNLS 418 (497)
Q Consensus 355 ~~~L~~L~l~~~~i~~~~~~~~~~--~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~i~ 418 (497)
+|+|+.|++.+|.+.+..+..++. .+++|+.|+++.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 455555555555544333222221 234455555555544431 1112233445555555555444
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=5.4e-09 Score=88.75 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=35.4
Q ss_pred CCCceEeccCccccceeeecccCCCCCCccccEEEc--cCCcCCCC----CCccccCCCCccEEEeeccccc
Q 037822 114 SNLKELALNKQSENISLIFNISSHWIPPFKLTFINI--RSCQLGPK----FPTWLRNQTELTTLVLNNVRIS 179 (497)
Q Consensus 114 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 179 (497)
+.|++|++++|.+.......+...+...+.|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344444444443333333334444444445666666 55655532 3344556678888888888765
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.1e-08 Score=86.81 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=28.4
Q ss_pred ccccEEEccCCcCCCC----CCccccCCCCccEEEe--eccccccccCchhhhc---ccCccEEEccccccc
Q 037822 142 FKLTFINIRSCQLGPK----FPTWLRNQTELTTLVL--NNVRISDTIPDWFWQL---DLTLDELDVAYNELS 204 (497)
Q Consensus 142 ~~L~~l~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~ 204 (497)
+.|++|+|++|.+... +...+...++|++|++ ++|.+.+.....+... .+.|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455555555555431 2333444455555555 4455543322222111 134555555555543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=2.7e-08 Score=82.10 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=41.2
Q ss_pred ccEEEcCCCCCcccCCccccCCCCCCEEECCCCc-ccccCCccccCC----CCCCEEECcCCc-CcccCCccCCCCCCCC
Q 037822 19 LEKLELGFNQLNGDLPSSLGYLKNLRYLELWHNS-FVGSIPPSIGNL----TFLKELYLSSNQ-MNGKFPENFGQLSAVE 92 (497)
Q Consensus 19 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~~~~~~~l~~L~ 92 (497)
|++||+++|.|++.....+..+++|++|++++|. +++.--..+..+ ++|++|++++|. +++.....+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 5555555555554444445555555555555553 333222233332 245555555553 5544444445555555
Q ss_pred EEEcCCCc
Q 037822 93 VLDLSENQ 100 (497)
Q Consensus 93 ~L~l~~n~ 100 (497)
+|++++|.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 55555553
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=8.3e-08 Score=79.15 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=50.1
Q ss_pred CCcEEEeecceeeeeCCcccccCCCCCEEecCCCc-CcccCChhHhh---hCCCCCEEEccCcc-cccCCCcccCCCCCC
Q 037822 333 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGE---SMPSLSILRLRSNY-FNGTIPPELCKLPAL 407 (497)
Q Consensus 333 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~---~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L 407 (497)
.|++|++++|.++......+..|++|++|++++|. +++.....+.. .+++|+.|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666666554444455566667777776663 65554444443 12467777777764 654433445667777
Q ss_pred CEEEccCCc
Q 037822 408 HILDLSHNN 416 (497)
Q Consensus 408 ~~L~l~~n~ 416 (497)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=6.7e-08 Score=86.13 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=64.2
Q ss_pred cCCCCCCEEECCCCcccc--cCCccccCCCCCCEEECcCCcCcccCCccCCCCC--CCCEEEcCCCccccccC------h
Q 037822 38 GYLKNLRYLELWHNSFVG--SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLS--AVEVLDLSENQWEGIIT------E 107 (497)
Q Consensus 38 ~~l~~L~~L~l~~~~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------~ 107 (497)
..+++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|++++|.+.+.++ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 468899999999999986 3456677899999999999999854 2333333 99999999999876443 2
Q ss_pred hhhhcCCCCceEecc
Q 037822 108 THFRNLSNLKELALN 122 (497)
Q Consensus 108 ~~~~~l~~L~~L~l~ 122 (497)
..+..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 357888999988754
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.4e-06 Score=77.58 Aligned_cols=79 Identities=25% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCCccEEEcCCCCCcc--cCCccccCCCCCCEEECCCCcccccCCccccCCC--CCCEEECcCCcCcccCC-------cc
Q 037822 16 SSLLEKLELGFNQLNG--DLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLT--FLKELYLSSNQMNGKFP-------EN 84 (497)
Q Consensus 16 ~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~-------~~ 84 (497)
+++|++|++++|.+++ .++..+..+++|++|+|++|.+.+. ..+..+. +|++|++++|++.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4599999999999987 3456678999999999999999854 2344444 99999999999986544 23
Q ss_pred CCCCCCCCEEEc
Q 037822 85 FGQLSAVEVLDL 96 (497)
Q Consensus 85 ~~~l~~L~~L~l 96 (497)
+..+++|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 677899998874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=1.1e-05 Score=67.90 Aligned_cols=117 Identities=11% Similarity=0.064 Sum_probs=54.9
Q ss_pred ccCCCCCCEEECcCC-cCcc----cCCccCCCCCCCCEEEcCCCcccccc---ChhhhhcCCCCceEeccCccccceeee
Q 037822 61 IGNLTFLKELYLSSN-QMNG----KFPENFGQLSAVEVLDLSENQWEGII---TETHFRNLSNLKELALNKQSENISLIF 132 (497)
Q Consensus 61 l~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~ 132 (497)
+.+-+.|++|++++| .+.+ .+.+++...+.|++|+|++|.+.+.- ...++..-+.|+.|++++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334455555555553 4442 12233444555555555555554220 011333444555555555544444444
Q ss_pred cccCCCCCCccccEEEccCC---cCCC----CCCccccCCCCccEEEeeccc
Q 037822 133 NISSHWIPPFKLTFINIRSC---QLGP----KFPTWLRNQTELTTLVLNNVR 177 (497)
Q Consensus 133 ~~~~~~~~~~~L~~l~l~~~---~~~~----~~~~~l~~l~~L~~L~l~~~~ 177 (497)
.+.+++...+.|++|+|+++ .+.. .+.+.+..-+.|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 44555555555666666543 2221 123344445666666665443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=7.9e-06 Score=68.71 Aligned_cols=115 Identities=10% Similarity=0.047 Sum_probs=59.8
Q ss_pred CCCCCCEEECCCC-cccc----cCCccccCCCCCCEEECcCCcCcccCCcc----CCCCCCCCEEEcCCCccccccC---
Q 037822 39 YLKNLRYLELWHN-SFVG----SIPPSIGNLTFLKELYLSSNQMNGKFPEN----FGQLSAVEVLDLSENQWEGIIT--- 106 (497)
Q Consensus 39 ~l~~L~~L~l~~~-~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--- 106 (497)
.-+.|+.|+++++ .+.. .+.+++...+.|++|+|++|.+++....+ +...+.|++|+|++|.|.+.-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456666666654 4432 13445555666666666666666433322 3345666666666666653211
Q ss_pred hhhhhcCCCCceEeccCc---cccceeeecccCCCCCCccccEEEccCCc
Q 037822 107 ETHFRNLSNLKELALNKQ---SENISLIFNISSHWIPPFKLTFINIRSCQ 153 (497)
Q Consensus 107 ~~~~~~l~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 153 (497)
..++..-+.|++|+++++ .+.......+.+.+..-+.|+.++++.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 123444455666666543 12222223344555555667777766544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0021 Score=50.31 Aligned_cols=38 Identities=29% Similarity=0.189 Sum_probs=32.3
Q ss_pred ccccCEEEccCCcccccCChhhhccCCCCeEECCCCCC
Q 037822 460 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSRNHL 497 (497)
Q Consensus 460 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~l~l~~n~i 497 (497)
.++|+.|+|++|.|+...++.|..+++|++|+|++||+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34678899999999877777888999999999999985
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0039 Score=48.72 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=34.2
Q ss_pred EEECCCCccc-ccCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCCCccc
Q 037822 45 YLELWHNSFV-GSIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSENQWE 102 (497)
Q Consensus 45 ~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 102 (497)
+++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666554 13443221 25777777777777555556667777777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.20 E-value=5.4 Score=28.92 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=29.0
Q ss_pred CCCCcccCCccccCCCCCCEEECCCCcccccCCccccCCCCCCEEECcCC
Q 037822 26 FNQLNGDLPSSLGYLKNLRYLELWHNSFVGSIPPSIGNLTFLKELYLSSN 75 (497)
Q Consensus 26 ~~~i~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~n 75 (497)
|..++.+...+|.+|..|+.+.+-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33455555566677777776666554 23344456666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.33 E-value=5.1 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=22.3
Q ss_pred cCCccccCCCCCCEEECcCCcCcccCCccCCCCCCCCEEEcCC
Q 037822 56 SIPPSIGNLTFLKELYLSSNQMNGKFPENFGQLSAVEVLDLSE 98 (497)
Q Consensus 56 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 98 (497)
+-..+|.++..|+.+.+-.+ ++.....+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34455555666666655543 3334445555555555555544
Done!