Query 037826
Match_columns 105
No_of_seqs 20 out of 22
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 07:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdr_X NS4B, P27, non-structur 49.2 19 0.00064 20.1 3.0 24 66-89 2-25 (28)
2 3rko_K NADH-quinone oxidoreduc 22.5 99 0.0034 19.9 3.6 32 67-99 63-94 (100)
3 3ixz_A Potassium-transporting 15.1 6E+02 0.021 22.4 10.0 74 16-89 941-1021(1034)
4 2l34_A TYRO protein tyrosine k 14.4 91 0.0031 17.3 1.7 18 68-85 14-31 (33)
5 2e2z_A TIM15; protein import, 13.0 43 0.0015 23.1 0.0 20 50-69 50-69 (100)
6 3t12_B Gliding protein MGLB; G 11.9 1.9E+02 0.0067 19.9 3.2 25 32-56 52-76 (136)
7 3qe7_A Uracil permease; uracil 10.9 5.2E+02 0.018 20.6 5.8 40 12-51 163-202 (429)
8 1mhs_A Proton pump, plasma mem 9.6 6E+02 0.02 22.6 6.1 67 17-86 807-876 (920)
9 2qts_A Acid-sensing ION channe 9.4 3.6E+02 0.012 20.6 4.2 27 60-86 398-427 (438)
10 2knp_A Mcocc-1; disulfide-rich 9.3 68 0.0023 18.2 0.0 12 52-63 5-16 (33)
No 1
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=49.17 E-value=19 Score=20.08 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 037826 66 DAIADVIGVLIASSALSLWRICSS 89 (105)
Q Consensus 66 D~~AD~~Gvl~aa~~l~l~~~~~~ 89 (105)
|+.+++..++-.-.+.++++++..
T Consensus 2 Das~~VtaiLssLTvTsLlr~lh~ 25 (28)
T 2kdr_X 2 DAAARVTAILSSLTVTQLLRRLHQ 25 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999998753
No 2
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=22.51 E-value=99 Score=19.91 Aligned_cols=32 Identities=19% Similarity=0.040 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 037826 67 AIADVIGVLIASSALSLWRICSSSRHGSDSGRT 99 (105)
Q Consensus 67 ~~AD~~Gvl~aa~~l~l~~~~~~~~~g~~~~~~ 99 (105)
...=+.++.-+|..+++..+..| .||+|.-++
T Consensus 63 l~~l~~aa~E~alGLallv~~~R-~~Gs~~~~~ 94 (100)
T 3rko_K 63 ILAISLAAAEASIGLALLLQLHR-RRQNLNIDS 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-TCSSCBGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCCCcHHH
Confidence 34556788889999999999998 688876443
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=15.05 E-value=6e+02 Score=22.41 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=37.7
Q ss_pred HHHHHhhhccc------chhhhhhHHHHHHHHHHHHHHHHHHHhh-CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 037826 16 FFSAWASVSRY------SFIRTHSIRVGSILSLLAGAAKEAADQL-GLFPSAGASFKDAIADVIGVLIASSALSLWRICS 88 (105)
Q Consensus 16 l~~~La~~t~~------p~lrr~~~~~G~~~~L~~GaaKE~aD~~-g~~rs~G~S~kD~~AD~~Gvl~aa~~l~l~~~~~ 88 (105)
++..+..++.+ ++.+++-++++.+++++.-.+.=-...+ ..|.....++.||+.=+.-.++.-..--+.|.+.
T Consensus 941 ~~~~~~~r~~~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~ 1020 (1034)
T 3ixz_A 941 IADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGV 1020 (1034)
T ss_pred HHHHHhhccCCCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666542 2235666777766666555443322222 3466777889999753332222222223444444
Q ss_pred c
Q 037826 89 S 89 (105)
Q Consensus 89 ~ 89 (105)
|
T Consensus 1021 r 1021 (1034)
T 3ixz_A 1021 R 1021 (1034)
T ss_pred H
Confidence 4
No 4
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=14.41 E-value=91 Score=17.29 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037826 68 IADVIGVLIASSALSLWR 85 (105)
Q Consensus 68 ~AD~~Gvl~aa~~l~l~~ 85 (105)
++|+++.++-+.+.++|.
T Consensus 14 vgdi~~t~~i~~~vy~~~ 31 (33)
T 2l34_A 14 VGDLVLTVLIALAVYFLG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 567777777666666653
No 5
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=13.01 E-value=43 Score=23.15 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHhhCCCCCCCCChHHHHH
Q 037826 50 AADQLGLFPSAGASFKDAIA 69 (105)
Q Consensus 50 ~aD~~g~~rs~G~S~kD~~A 69 (105)
++|++|+|.....++.|.++
T Consensus 50 IaDnLgwF~d~~~~IEdil~ 69 (100)
T 2e2z_A 50 IADHLKIFHDHHVTVEQLMK 69 (100)
T ss_dssp SCCSSCSGGGSCCCHHHHHH
T ss_pred eehhhhhhccCCCCHHHHHH
Confidence 47999999887778888765
No 6
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=11.85 E-value=1.9e+02 Score=19.95 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhCC
Q 037826 32 HSIRVGSILSLLAGAAKEAADQLGL 56 (105)
Q Consensus 32 ~~~~~G~~~~L~~GaaKE~aD~~g~ 56 (105)
..-.++.+.....|+.+|+++++|-
T Consensus 52 d~~~lAAl~A~~~~a~~~la~~Lge 76 (136)
T 3t12_B 52 PLDTLATLVASNAAATQALAKLLGE 76 (136)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3456888888999999999999874
No 7
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=10.87 E-value=5.2e+02 Score=20.64 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhcccchhhhhhHHHHHHHHHHHHHHHHHH
Q 037826 12 TLTFFFSAWASVSRYSFIRTHSIRVGSILSLLAGAAKEAA 51 (105)
Q Consensus 12 ~it~l~~~La~~t~~p~lrr~~~~~G~~~~L~~GaaKE~a 51 (105)
.++++...+.++....++|+.++.+|.+++.+....-...
T Consensus 163 ~~tl~iii~~~~~~kg~~~~~aiLigivvg~~~a~~~G~~ 202 (429)
T 3qe7_A 163 ITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIV 202 (429)
T ss_dssp HHHHHHHHHHHHSSSTTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3444444455666667788899999888887776664443
No 8
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=9.57 E-value=6e+02 Score=22.61 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHhhhcccchhhhh---hHHHHHHHHHHHHHHHHHHHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 037826 17 FSAWASVSRYSFIRTH---SIRVGSILSLLAGAAKEAADQLGLFPSAGASFKDAIADVIGVLIASSALSLWRI 86 (105)
Q Consensus 17 ~~~La~~t~~p~lrr~---~~~~G~~~~L~~GaaKE~aD~~g~~rs~G~S~kD~~AD~~Gvl~aa~~l~l~~~ 86 (105)
+..+..|+.+|+.+.. .+..+++++.+..... -++++|.....++.||+.-.+-.++...+.-+.|.
T Consensus 807 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~e~~k~ 876 (920)
T 1mhs_A 807 WLIFITRANGPFWSSIPSWQLSGAIFLVDILATCF---TIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVYY 876 (920)
T ss_dssp HHTTSSSCSSSCSCCSCTHHHHHHHHHHHHHHHHH---HSSSSTTSCSHHHHTHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHhccchhhhcCchHHHHHHHHHHHHHHHHHH---HHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666654322 2233333333333332 24678888888999998766555555555555554
No 9
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=9.37 E-value=3.6e+02 Score=20.58 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHH---HHHHHHHHHHHHH
Q 037826 60 AGASFKDAIADVIG---VLIASSALSLWRI 86 (105)
Q Consensus 60 ~G~S~kD~~AD~~G---vl~aa~~l~l~~~ 86 (105)
--.++-|+++|+.| ..+|+.++++.+.
T Consensus 398 ~~~~~~~lls~~GG~~GLflG~S~ls~~Ei 427 (438)
T 2qts_A 398 KAYEVAGLLGDIGGQMGLFIGASILTVLEL 427 (438)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhHHHHHhcchHHHHHHH
Confidence 34688899999655 5688888887764
No 10
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=9.35 E-value=68 Score=18.22 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=9.0
Q ss_pred HhhCCCCCCCCC
Q 037826 52 DQLGLFPSAGAS 63 (105)
Q Consensus 52 D~~g~~rs~G~S 63 (105)
.|-|+|||+|.-
T Consensus 5 kqcglfrscggg 16 (33)
T 2knp_A 5 KQCGLFRSCGGG 16 (33)
T ss_dssp EEEETTCCCCSS
T ss_pred cccceeeccCCc
Confidence 356889999864
Done!