BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037827
MCSDEVTTAQEESDDGNNKTPNTKDEKIIKDIANYKQVTRYLLEDDWKGLEDYIMSKTPN
ALACIIVDQSSIFEFIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVV
CYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIAGTGKILELLSKRPKAFASGIRLGYWK
GLLYQWIPVQEEYNPHAHAHSENVDGDLEKQLSETSHSAFGFELAYLLLHWFVSFRVSTT
PLTLATNDVRLPHSKIQYLHQYL

High Scoring Gene Products

Symbol, full name Information P value
CDKN2C
Uncharacterized protein
protein from Gallus gallus 0.00069
CDKN2C
Cyclin-dependent kinase 4 inhibitor C
protein from Homo sapiens 0.00093

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037827
        (263 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|F1NLF9 - symbol:CDKN2C "Uncharacterized protein...   104  0.00069   1
UNIPROTKB|P42773 - symbol:CDKN2C "Cyclin-dependent kinase...   103  0.00093   1


>UNIPROTKB|F1NLF9 [details] [associations]
            symbol:CDKN2C "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000079 "regulation of cyclin-dependent protein
            serine/threonine kinase activity" evidence=IEA] [GO:0000082 "G1/S
            transition of mitotic cell cycle" evidence=IEA] [GO:0004861
            "cyclin-dependent protein serine/threonine kinase inhibitor
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
            apoptosis" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0019901 "protein kinase binding"
            evidence=IEA] [GO:0030308 "negative regulation of cell growth"
            evidence=IEA] InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008285 GO:GO:0000079
            GO:GO:0006917 GO:GO:0030308 GO:GO:0000082 Gene3D:1.25.40.20
            InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297
            GO:GO:0007050 GO:GO:0004861 GeneTree:ENSGT00390000004527
            EMBL:AADN02012587 IPI:IPI00603171 Ensembl:ENSGALT00000017152
            OMA:IDEPDGY Uniprot:F1NLF9
        Length = 168

 Score = 104 (41.7 bits), Expect = 0.00069, P = 0.00069
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query:    77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
             VA  G L+ + TL+ + AD+ N+ D E  LP+H AA++G   VV +LL +T
Sbjct:    78 VARAGFLDTLQTLLEFHADV-NIEDAEGNLPLHLAAQEGHVRVVEFLLRRT 127


>UNIPROTKB|P42773 [details] [associations]
            symbol:CDKN2C "Cyclin-dependent kinase 4 inhibitor C"
            species:9606 "Homo sapiens" [GO:0048709 "oligodendrocyte
            differentiation" evidence=IEA] [GO:0000080 "G1 phase of mitotic
            cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
            evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0004861
            "cyclin-dependent protein serine/threonine kinase inhibitor
            activity" evidence=IDA] [GO:0007050 "cell cycle arrest"
            evidence=IDA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IDA] [GO:0000082 "G1/S transition of
            mitotic cell cycle" evidence=IDA] [GO:0030308 "negative regulation
            of cell growth" evidence=IDA] [GO:0042326 "negative regulation of
            phosphorylation" evidence=IDA] [GO:0000079 "regulation of
            cyclin-dependent protein serine/threonine kinase activity"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006917 "induction of apoptosis"
            evidence=IDA] [GO:0019901 "protein kinase binding" evidence=IPI]
            InterPro:IPR002110 Pfam:PF00023 PROSITE:PS50088 SMART:SM00248
            GO:GO:0005829 GO:GO:0005634 Reactome:REACT_115566 GO:GO:0008285
            GO:GO:0000079 GO:GO:0006917 GO:GO:0030308 GO:GO:0000082
            eggNOG:COG0666 Gene3D:1.25.40.20 InterPro:IPR020683 SUPFAM:SSF48403
            PROSITE:PS50297 GO:GO:0007050 GO:GO:0048709 GO:GO:0000080
            GO:GO:0004861 HOGENOM:HOG000290191 HOVERGEN:HBG050870 PDB:1G3N
            PDBsum:1G3N Orphanet:652 EMBL:U17074 EMBL:AF041248 EMBL:AF041250
            EMBL:AF041249 EMBL:AY094608 EMBL:BC000598 EMBL:BC005041
            EMBL:BC016173 IPI:IPI00001564 PIR:A55479 RefSeq:NP_001253.1
            RefSeq:NP_523240.1 UniGene:Hs.525324 PDB:1BU9 PDB:1IHB PDB:1MX2
            PDB:1MX4 PDB:1MX6 PDBsum:1BU9 PDBsum:1IHB PDBsum:1MX2 PDBsum:1MX4
            PDBsum:1MX6 ProteinModelPortal:P42773 SMR:P42773 IntAct:P42773
            MINT:MINT-1372629 STRING:P42773 PhosphoSite:P42773 DMDM:1168870
            PaxDb:P42773 PRIDE:P42773 DNASU:1031 Ensembl:ENST00000262662
            Ensembl:ENST00000371761 Ensembl:ENST00000396148 GeneID:1031
            KEGG:hsa:1031 UCSC:uc001csf.3 CTD:1031 GeneCards:GC01P051427
            HGNC:HGNC:1789 HPA:CAB005303 HPA:CAB018398 HPA:HPA019057
            HPA:HPA019764 MIM:603369 neXtProt:NX_P42773 PharmGKB:PA26322
            InParanoid:P42773 KO:K06622 OMA:KDQTGFA OrthoDB:EOG4S4PHS
            PhylomeDB:P42773 EvolutionaryTrace:P42773 GenomeRNAi:1031
            NextBio:4337 ArrayExpress:P42773 Bgee:P42773 CleanEx:HS_CDKN2C
            Genevestigator:P42773 GermOnline:ENSG00000123080 Uniprot:P42773
        Length = 168

 Score = 103 (41.3 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query:    78 ASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
             A  G L+ + TL+ ++AD+ N+ D E  LP+H AAK+G   VV +L++ T
Sbjct:    78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      263       263   0.00091  114 3  11 22  0.50    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  207 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.24u 0.13s 25.37t   Elapsed:  00:00:01
  Total cpu time:  25.24u 0.13s 25.37t   Elapsed:  00:00:01
  Start:  Fri May 10 02:03:27 2013   End:  Fri May 10 02:03:28 2013

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