BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037827
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
A G+L+ + TL+ ++AD+ N+ D E LP+H AAK+G VV +L++ T
Sbjct: 77 AARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
A G L+ + TL+ ++AD+ N+ D E LP+H AAK+G VV +L++ T
Sbjct: 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
A G L+ + TL+ ++AD+ N+ D E LP+H AAK+G VV +L++ T
Sbjct: 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
A G L+ + TL+ ++AD+ N+ D E LP+H AAK+G VV +L++ T
Sbjct: 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65 IIVDQSSIFEF----IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVV 120
++VD ++ + + + G ++L+ L++++AD+ N + + P+H+AA+QG ++V
Sbjct: 302 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIV 360
Query: 121 CYLLEKTRAPLDGSDD 136
LL+ +P + S D
Sbjct: 361 TLLLKNGASPNEVSSD 376
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 20/112 (17%)
Query: 20 TPNTKDEKI-----IKDIANYKQVTRYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFE 74
+PN + K+ + A + +V +YLL++ K +TP L C
Sbjct: 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP--LHC---------- 86
Query: 75 FIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEK 126
A G ++ L+ A+ PN+ P+H AA++G V LLEK
Sbjct: 87 --AARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE-KTRAPLDGS 134
+ + G L ++ L++ A PNV + + P+H AA+ G V YLL+ K +
Sbjct: 20 VASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78
Query: 135 DD 136
DD
Sbjct: 79 DD 80
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+ A G E+ L++ +A + N + +++ P+H AA+ G N+V LLE P
Sbjct: 53 MAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 106
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+ A GK+ + L+ +A PN + L P+H A ++V LL + +P
Sbjct: 152 VAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
A G L+ + TL+ +AD+ N+ D E LP+H AAK+G VV +L++ T
Sbjct: 77 AARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 67 VDQSSIFEF----IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCY 122
VD + ++ F + A TG LE++ L++Y AD+ N D P+H AA +G +V
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV-NAFDMTGSTPLHLAADEGHLEIVEV 131
Query: 123 LLE 125
LL+
Sbjct: 132 LLK 134
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADLPN 98
+ LLE G +D + N VD + + + A +G LE++ L+++ AD+ +
Sbjct: 16 KKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-D 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIAGTGK 158
D P+H AA G +V LL+ G+D A+ + P L A G +
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKY------GADVNAFDMTGSTP-LHLAADEGHLE 127
Query: 159 ILELLSK 165
I+E+L K
Sbjct: 128 IVEVLLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 36 KQVTRYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEA 94
+ + + LLE G +D + N D + + + A+ G+LE++ L++ A
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 95 DLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIA 154
D+ N D + P+H AA G +V LL+ G+D AY P L A ++
Sbjct: 64 DV-NASDSAGITPLHLAAYDGHLEIVEVLLKH------GADVNAYDRAGWTP-LHLAALS 115
Query: 155 GTGKILELLSKR 166
G +I+E+L K
Sbjct: 116 GQLEIVEVLLKH 127
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 68 DQSSIFEFIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKT 127
DQ S + A G E++ L+++ AD+ N RD + P+H AA G +V LL K
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLL-KY 102
Query: 128 RAPLDGSDDVAYGLLRKH 145
A ++ D AYGL H
Sbjct: 103 GADVNAQD--AYGLTPLH 118
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 37 QVTRYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEAD 95
++ + L+E G +D + N D + A G E++ L+ AD
Sbjct: 3 ELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD 62
Query: 96 LPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
PN +D + P+H AA+ G + VV LL + P
Sbjct: 63 -PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 96
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 75 FIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+ A G E++ L+ AD PN +D + P+H AA+ G + VV LL + P
Sbjct: 75 HLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A+TG LE++ L+++ AD+ N D + P+H AAK G +V LL+
Sbjct: 86 LAAATGHLEIVEVLLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ AS G LE++ L++ AD+ N D + P+H AA G +V LL+
Sbjct: 53 LAASNGHLEIVEVLLKNGADV-NASDLTGITPLHLAAATGHLEIVEVLLK 101
>pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 158 KILELLSKRPKAFASGIRLGY------WKGLLYQWIPVQEEYNPHAHAHSENVDGDLEKQ 211
KIL LL+ PK++A+ IRLG +G + Q +P + A E + G++ +
Sbjct: 58 KILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQV 117
Query: 212 LSETSHSAFGFELAYLLLHWFVSFRVSTTPLTL 244
S S G AY L S ++ P+ +
Sbjct: 118 PSSVSAIKVGGRRAYRLARQGRSVQLEARPIRI 150
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 25/154 (16%)
Query: 17 NNKTPNTKDEKIIKDIANYKQVTRYLLEDDWKGLEDYIMSKT--PNALACIIVDQSSIFE 74
N PN D ++ + Y E+ K + ++SK PNA D +
Sbjct: 26 NGADPNASD-------SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS---DGRTPLH 75
Query: 75 FIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP--LD 132
+ A G E++ L+ AD PN +D + P+H AA+ G + +V LL K P D
Sbjct: 76 Y-AAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 133 GSDDVAYGLLRKHPKLAWAEIAGTGKILELLSKR 166
L R+H G +I++LL K+
Sbjct: 134 SDGRTPLDLAREH---------GNEEIVKLLEKQ 158
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
A G + + L+ AD PN D + P+H AA+ G + +V LL K P
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP 63
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 38 VTRYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADL 96
+ + LLE G +D + N +D+ + + A G LE++ L++Y AD+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 97 PNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
N D + P+H AA +G +V LL+
Sbjct: 74 -NAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 78 ASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDV 137
A G+ + + L+ AD+ N DE+ L P+H AA+ G +V LL K A ++ D+
Sbjct: 22 ARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN- 78
Query: 138 AYGLLRKHPKLAWAEIAGTGKILELLSK 165
+G+ H A I G +I+E+L K
Sbjct: 79 -FGITPLH----LAAIRGHLEIVEVLLK 101
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 67 VDQSSIFEF----IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCY 122
VD S +F + + A G LE++ L++ AD+ N D + + P+H AAK G +V
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 123 LLE 125
LL+
Sbjct: 132 LLK 134
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 38 VTRYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADL 96
+ R LLE G +D + N D + + A +G LE++ L+++ AD+
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV 73
Query: 97 PNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIAGT 156
+ D P+H AA G +V LL K A ++ D + G+ H W +
Sbjct: 74 -DASDVFGYTPLHLAAYWGHLEIVEVLL-KNGADVNAMD--SDGMTPLHLAAKWGYL--- 126
Query: 157 GKILELLSKR 166
+I+E+L K
Sbjct: 127 -EIVEVLLKH 135
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+V + G LE+I L++Y AD+ N D+ P+H AA +G +V LL+
Sbjct: 53 LVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L++Y AD+ N D + P+H AA+ G +V LL+
Sbjct: 86 LAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+++ AD+ N +D E P+H AA G +V LL+
Sbjct: 86 LAADNGHLEIVEVLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A TG LE++ L++Y AD+ N D P+H AA G +V LL+
Sbjct: 53 LAAKTGHLEIVEVLLKYGADV-NAWDNYGATPLHLAADNGHLEIVEVLLK 101
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADLPN 98
+ LLE G +D + N +D + + + A G LE++ L+++ AD+ N
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-N 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLE 125
RD P+H AA G +V LLE
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 28/100 (28%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEK---------- 126
A G E++ LI AD+ N +D + P+H AAK+G + +V L+ K
Sbjct: 77 AAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 127 TRAPLDGSDDVAYGLLRKHPKLAWAEIAGTGKILELLSKR 166
R PLD L R+H G +I++LL K+
Sbjct: 136 GRTPLD--------LAREH---------GNEEIVKLLEKQ 158
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEK 126
A G E++ LI AD+ N +D + P+H AAK+G + +V L+ K
Sbjct: 44 AAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEK 126
A G + + LI AD+ N D + P+H AAK+G + +V L+ K
Sbjct: 11 AAENGNKDRVKDLIENGADV-NASDSDGRTPLHYAAKEGHKEIVKLLISK 59
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSD 135
+ A G LE++ L++ AD+ N D P+H AAK+G +V LL K A ++ D
Sbjct: 86 LAARRGHLEIVEVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQD 143
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+ AD+ N +D+ P+H AA+ G VV LLE
Sbjct: 8 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+ AD+ N +D+ P+H AA+ G VV LLE
Sbjct: 41 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+ AD+ N +D+ P+H AA+ G VV LLE
Sbjct: 74 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+ AD+ N +D+ P+H AA+ G VV LLE
Sbjct: 8 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L+ AD+ N +D+ P+H AA+ G VV LLE
Sbjct: 41 LAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADLPN 98
+ LLE G +D + N +D + + + A G LE++ L+++ AD+ N
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-N 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLE 125
D P+H AA G +V LLE
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 80 TGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSD 135
G+ + + L+ AD+ N D+ + P+H AAK+G +V LL K A ++ SD
Sbjct: 24 AGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASD 77
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ AS G LE++ L++Y AD+ N +D + P++ AA G +V LL+
Sbjct: 74 LAASLGHLEIVEVLLKYGADV-NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A+ G LE++ L+R AD+ N D P+H AA G +V LL+
Sbjct: 41 MAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLK 89
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 34/156 (21%)
Query: 26 EKIIKDIANYK-QVTRYLLE---DDWKGLEDYIMSKTP---------------------- 59
EK+++ +A+ ++ RYLLE +D + ED + + P
Sbjct: 13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKV 72
Query: 60 --NALACIIVDQSSIFEFIVAST-GKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQ 116
+ L + Q VA+ G+ +LI L+++ A+ R+ + +P+H A +QG
Sbjct: 73 PASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGH 131
Query: 117 RNVVCYLLEKTRAP----LDGSDDVAYGLLRKHPKL 148
VV LL+ P L G+ + Y H +L
Sbjct: 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHEL 167
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEF-IVASTGKLELISTLIRYEADLPN 98
+ LLE G +D + N +D + + + A G LE++ L+++ AD+ N
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-N 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLE 125
D P+H AA G +V LLE
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 80 TGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSD 135
G+ + + L+ AD+ N D+ + P+H AAK+G +V LL K A ++ SD
Sbjct: 24 AGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASD 77
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEFIVAST-GKLELISTLIRYEADLPN 98
+ LLE G +D + N D S + +A+T G LE++ L+++ AD+ N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-N 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIAGTGK 158
D P+H AA G +V LL+ G+D A P L A I G +
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKH------GADVNAVDTWGDTP-LHLAAIMGHLE 127
Query: 159 ILELLSKR 166
I+E+L K
Sbjct: 128 IVEVLLKH 135
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSD 135
+ A G LE++ L+++ AD+ N D+ P+H AA G +V LL K A ++ +D
Sbjct: 53 LAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLL-KNGADVNATD 110
Query: 136 DVAYGLLRKHPKLAWAEIAGTGKILELLSK 165
YG H A AG +I+E+L K
Sbjct: 111 --TYGFTPLH----LAADAGHLEIVEVLLK 134
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 40 RYLLEDDWKGLEDYIMSKTPNALACIIVDQSSIFEFIVAST-GKLELISTLIRYEADLPN 98
+ LLE G +D + N D S + +A+T G LE++ L+++ AD+ N
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-N 74
Query: 99 VRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDDVAYGLLRKHPKLAWAEIAGTGK 158
D P+H AA G +V LL+ G+D A P L A I G +
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKH------GADVNAVDTWGDTP-LHLAAIMGHLE 127
Query: 159 ILELLSKR 166
I+E+L K
Sbjct: 128 IVEVLLKH 135
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A G LE++ L++ AD+ N D P+H AAK+G +V LL+
Sbjct: 53 LAARVGHLEIVEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEK 126
A G E + L+ AD+ N R ++ P+H AAK G +V LL K
Sbjct: 16 AAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 75 FIVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYL 123
+ A G E++ L+ AD+ N R ++ P H A K G +V L
Sbjct: 47 HLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSDD 136
A LE + LI+ A L + +D E +H AAK+G VV YLL + ++ DD
Sbjct: 51 AAENNHLEAVKYLIKAGA-LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 42 LLEDDWKGLEDYIMSK-TPNALACIIVD-QSSIFEFIVASTGKLELISTLIRYEADLPNV 99
LLE G E+ +M+ TP + C D + S + A ++ ++ L+++ AD+ +
Sbjct: 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HA 86
Query: 100 RDEENLLPIHRAAKQGQRNVVCYLLE 125
+D+ L+P+H A G V LL+
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLK 112
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+A+ G++ ++T I E ++ N DEE P+ AA GQ VV +LL+ P
Sbjct: 8 LAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+A+ G++ ++T I E ++ N DEE P+ AA GQ VV +LL+ P
Sbjct: 10 LAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 77 VASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
+A+ G++ ++T I E ++ N DEE P+ AA GQ VV +LL+ P
Sbjct: 26 LAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
I AS G+ E++ L+ A + N ++ P+H AA + + + LLE P
Sbjct: 80 IAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 81 GKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
G+ +L+ +I YE D P++ ++E + +H A G +V +L++
Sbjct: 48 GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
I + G + + L++ +D PNV+D P+H A G VV LL+
Sbjct: 16 IASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 81 GKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLL 124
G L+++ L++++A L N +N P+H AAK G ++V LL
Sbjct: 54 GHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
I AS G+ E++ L+ A + N ++ P+H AA + + + LLE P
Sbjct: 79 IAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 81 GKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
G+ +L+ +I YE D P++ ++E + +H A G +V +L++
Sbjct: 48 GEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ 91
>pdb|3P1U|A Chain A, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
pdb|3P1U|B Chain B, Crystal Structure Of A Susd Homolog (Bdi_0600) From
Parabacteroides Distasonis Atcc 8503 At 2.05 A
Resolution
Length = 529
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 165 KRPKAFASGIRLGYWKGLLYQWIPVQEEYN 194
+ PK F GI G WKGL+Y P EE N
Sbjct: 296 RAPKIFQPGIENGDWKGLVYG--PKAEEAN 323
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAP 130
I AS G+ E++ L+ A + N ++ P+H AA + + + LLE P
Sbjct: 79 IAASAGRDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLEKTRAPLDGSD 135
+ A G L+R + R + + P+H AA +G N+V LL+ G+D
Sbjct: 40 LAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKH------GAD 92
Query: 136 DVAYGLLRKHPKLAWAEIAGTGKILELLSK 165
A +L K L WA +++ELL K
Sbjct: 93 VNAKDML-KMTALHWATEHNHQEVVELLIK 121
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 76 IVASTGKLELISTLIRYEADLPNVRDEENLLPIHRAAKQGQRNVVCYLLE 125
+ A+ G E++ LI+ D+ N++D + P+H AA G+ L+E
Sbjct: 205 VAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVE 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,257,574
Number of Sequences: 62578
Number of extensions: 347021
Number of successful extensions: 842
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 98
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)