BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037832
(711 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 158/348 (45%), Gaps = 35/348 (10%)
Query: 29 VTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTR 88
+ Y R + +GQ SGSIHY R W D L K K GL+ + TYV WN HEP
Sbjct: 11 IDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWP 70
Query: 89 GKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQP 148
G++ F +D+ F++LA + GL V LR GPY CAEW G PAWL + R +
Sbjct: 71 GQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPD 130
Query: 149 FELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEF---------------ELVEWNL 193
+ + KW+ ++ +K L GGP+I Q+ENE+ + +L
Sbjct: 131 YLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHL 188
Query: 194 GDRARVYGQWAAHMAIGLNITVPWIMCKQANAPDPIID-TCNDFYCDWFSPNKDYKPK-- 250
GD ++ AH ++ C +D D F + +PK
Sbjct: 189 GDDVVLFTTDGAHKT--------FLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGP 240
Query: 251 -MWTENWTAWVQQFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGA-- 307
+ +E +T W+ +G P E +A S+ + G S+ N YM+ GGTNF NGA
Sbjct: 241 LINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NLYMFIGGTNFAYWNGANS 299
Query: 308 -FVA--TSYDYDGVIDEYGLPSEPKWGHLSELHKVIKTCEPTILNSEP 352
+ A TSYDYD + E G +E + + + K K E I S P
Sbjct: 300 PYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTP 347
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 621 TWYKTTFDAPEGNDPLALDMRTM----SKGLIWVNGHGVGRYWSA 661
+Y F P G L D +KG +W+NG +GRYW A
Sbjct: 527 AFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPA 571
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 151/320 (47%), Gaps = 36/320 (11%)
Query: 33 RKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPTRGKFY 92
R ++G+ + SG+IHY R PE W L K G + V+TYV WN HEP G+F+
Sbjct: 7 RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFH 66
Query: 93 FEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQPFELE 152
FEG DL +F+++AQ GLY +R P+ CAEW FG PAWL M R + +
Sbjct: 67 FEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWL-LTKNMRIRSSDPAYIEA 125
Query: 153 MQKWVTKIVDMLKAEKLFETQGGPIILSQIENEF--------------ELVEWNLGDRAR 198
+ ++ +++ L L GG I++ Q+ENE+ +L+E G
Sbjct: 126 VGRYYDQLLPRLVPRLL--DNGGNILMMQVENEYGSYGEDKAYLRAIRQLME-ECGVTCP 182
Query: 199 VY---GQWAAHMAIGLNITVPWIMCKQANAPDPI-IDTCNDFYCDWFSPNKDYKPKMWTE 254
++ G W A + G I + + P +F F + P M E
Sbjct: 183 LFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEF----FDEHGKKWPLMCME 238
Query: 255 NWTAWVQQFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAFV----- 309
W W ++ P + R ++LA +V + ++ G N YM+HGGTNF NG
Sbjct: 239 FWDGWFNRWKEPIITRDPKELADAVREVLEQGSI--NLYMFHGGTNFGFMNGCSARGTLD 296
Query: 310 ---ATSYDYDGVIDEYGLPS 326
TSYDYD ++DE G P+
Sbjct: 297 LPQVTSYDYDALLDEEGNPT 316
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 471 YLWYTTEVFIDPSEGFLYNGQDPLLNIMSAGHGLNVYVNDQLQGLHHGSLETPQVTFSKK 530
YL Y TE D E L I+ +YV+ Q + + + + K
Sbjct: 385 YLLYRTETNWDAEE--------ERLRIIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGK 436
Query: 531 VKLRGGVNKISLQSVAVGLPNIGTQFEKWNLGVLGPVTLSGLNEGT-RDLA-KQNWT-YK 587
K G++++ + +G N G +F L G+ G +DL NW Y
Sbjct: 437 KK---GLSRLDILIENMGRVNYGHKF-------LADTQRKGIRTGVCKDLHFLLNWKHYP 486
Query: 588 IGLEGEDLGLPFTGGNSSVQWVQGPTLAKNWPGTWYKTTFDAPEGNDPLALDMRTMSKGL 647
+ L+ + + F+ G W QG +Y F E D LD+ KG+
Sbjct: 487 LPLDNPE-KIDFSKG-----WTQGQP-------AFYAYDFTVEEPKDTY-LDLSEFGKGV 532
Query: 648 IWVNGHGVGRYWSASIAYGNCSPH 671
+VNG +GR+W+ PH
Sbjct: 533 AFVNGQNLGRFWNVGPTLSLYIPH 556
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 142/313 (45%), Gaps = 19/313 (6%)
Query: 26 KSTVTYDRKGLIINGQRRILFSGSIHYPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHE 85
+ T + ++NG+ ++ + IHYPR E W +K K G + + YVFWN HE
Sbjct: 5 EGTFEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHE 64
Query: 86 PTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRID 145
P G++ F G+ D+ F +LAQ+ G YV +R GPY CAEW G P WL ++ R +
Sbjct: 65 PEEGRYDFAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLR-E 123
Query: 146 NQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFEL--VEWNLGDRARVYGQW 203
P+ E K V A+ L ++GG II Q+ENE+ ++ R +
Sbjct: 124 QDPYYXERVKLFLNEVGKQLAD-LQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQ 182
Query: 204 AAHMAIGLNITVPWIMCKQANAPDPIIDTCN----DFYCDWFSPNKDYKPKM---WTENW 256
A + L W + NA D ++ T N + F K+ +P +E W
Sbjct: 183 AGFTGVPL-FQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFW 241
Query: 257 TAWVQQFGTPPLYRPHEDLAYSVLKFIQTGGSMNNYYMYHGGTNFDRTNGAF------VA 310
+ W +G R E+L + + S + Y HGGT+F GA
Sbjct: 242 SGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTHGGTSFGHWGGANFPNFSPTC 300
Query: 311 TSYDYDGVIDEYG 323
TSYDYD I+E G
Sbjct: 301 TSYDYDAPINESG 313
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 615 AKNWPGTWYKTTFDAPEGNDPLALDMRTMSKGLIWVNGHGVGRYWS 660
A+N P +Y++TF+ E D L+ SKG +WVNGH +GRYW
Sbjct: 504 AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWE 547
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 99/195 (50%), Gaps = 4/195 (2%)
Query: 25 VKSTVTYDRKGLIINGQRRILFSGSIH-YPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNG 83
+++ VT+D L ++G+R ++FSG +H + P ++ D+ K K G + V YV W
Sbjct: 22 LQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWAL 81
Query: 84 HEPTRGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFR 143
E G+F +G + L F + A +AG+Y+ R GPY AE + G FP WL+ + G + R
Sbjct: 82 LEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLR 140
Query: 144 IDNQPFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFELVEWNLGDRARVYGQW 203
D + +V I ++ ++ T GGP+IL Q ENE+ + + Y Q+
Sbjct: 141 TDAPDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSGAAEGVLFPNKPYMQY 198
Query: 204 AAHMAIGLNITVPWI 218
A I VP I
Sbjct: 199 VIDQARNAGIIVPLI 213
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 149/372 (40%), Gaps = 64/372 (17%)
Query: 29 VTYDRKGLIINGQRRILFSGSIH-YPRSTPEMWPDLLKKAKDGGLDIVDTYVFWNGHEPT 87
VT+D + +NG+R ++FSG +H Y ++ D+ +K K G + V YV W E
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 88 RGKFYFEGRYDLVRFIKLAQQAGLYVTLRIGPYACAEWNFGAFPAWLKFIPGMEFRIDNQ 147
G + EG +DL F A++AG+Y+ R GPY AE + G FP WL+ + G+ R ++
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDE 124
Query: 148 PFELEMQKWVTKIVDMLKAEKLFETQGGPIILSQIENEFE--LVEWNLGDRARVYGQWAA 205
+ + + I + ++ T GGPIIL Q ENE+ +N G Y Q+
Sbjct: 125 AYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSGACCGYN-GFPDGSYMQYIE 181
Query: 206 HMAIGLNITVPWIM----CKQANAPDPIIDTCNDFYCDWFSPNKD-YKPKMWTENWTAWV 260
A I VP+I NAP + + D + D P W
Sbjct: 182 DHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPS------ 235
Query: 261 QQFGTPPLY--RPHEDLA----YSVLKFIQTGGSMN------------------------ 290
G P Y HE + YS+++F GG+ +
Sbjct: 236 ---GNLPTYFHTSHEQQSPSTPYSLVEF--QGGAFDPWGGVGFAKCAALLNHEFERVFYK 290
Query: 291 ----------NYYMYHGGTNFDRTNGAFVATSYDYDGVIDEYGLPSEPKWGHLSELHKVI 340
N YM GGTN+ TSYDY I E + K+ L L
Sbjct: 291 NDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFA 350
Query: 341 KTCEPTILNSEP 352
K P L + P
Sbjct: 351 K-VSPGYLVANP 361
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 158 TKIVDMLKAEKLFETQGGPIILSQIENEFELVEWN 192
T+I+ +A K FE QG ++ + ++E+ L+ W
Sbjct: 70 TEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWT 104
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 246 DYKPKMWTENWTAWVQQFGTPPLYRPHEDLAYSVLKFIQTG 286
D K +W+ ++ GTPP Y +E Y +LK ++TG
Sbjct: 200 DEKCDVWSAGVILYILLSGTPPFYGKNE---YDILKRVETG 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,156,138
Number of Sequences: 62578
Number of extensions: 1180752
Number of successful extensions: 2284
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2245
Number of HSP's gapped (non-prelim): 31
length of query: 711
length of database: 14,973,337
effective HSP length: 106
effective length of query: 605
effective length of database: 8,340,069
effective search space: 5045741745
effective search space used: 5045741745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)